<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-17 02:53:39"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688157" ref_strand="+" ref_description="SGN-E688157 [T3_tus_85_O10]">
      <seq>caatttggaaggacgtgttaaggaaggaagaatgactcacgagcattataaaaaagcgtgcacgcttttaaagggtgttttgagctatgataacttcaaagatgtggatctagtcatagaggacatgcctgacattgtgtccttgaagcagcaattttttgctgatcttgatgaatgttgccctcatcactgcatttttgcttcaactacatgtatagtcaacttaaatttgattggagaaaggatgaaaccatgtaaggagattgttgggatccacttttttagctcaccctctgtcactgatctcctggaaattgtccgaacaaagaggacatcccctcaaacgcttgttgatctgttaaactttggaaggaggattcaaaagactcctattgaagttcagaattgtacaggtattgcagtcagacatatgtgcttcccctacttgcaggcagcgatgcttcttgttgaacatggtgctgatgtgtatcagattgataaggcgcttaccagctttgggttgaaactgggtccatttagaatgcttgatcaagatggattcctgtctgcagctgtgcatgatgtgaaattccttgagacttttccagatagatcttacaaatcgaatttgattccaatcatgaggaaaaataacggtgaaggtaaatactcttgccagggcttctacacatactatgacaaggaagaggcaagcccagatcccgaaatatcaaaatatatagaaatggcgagaagtatgtctggtatcaccattagatcatagttggcaacgttgtccgatggagaaattgttgagatgattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10012" stop="6425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9712" g_stop="9592" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9591" i_stop="8657" i_length="935">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8656" g_stop="8493" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="285" r_length="164" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8492" i_stop="8418" i_length="75">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8417" g_stop="8163" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="540" r_length="255" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8162" i_stop="7789" i_length="374">
            <donor d_prob="0.776" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7788" g_stop="7667" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="662" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7666" i_stop="7578" i_length="89">
            <donor d_prob="0.765" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7577" g_stop="7456" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="784" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7455" i_stop="6767" i_length="689">
            <donor d_prob="0.960" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6766" g_stop="6725" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="785" r_stop="826" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E688157" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9712" e_stop="9592"/>
          <exon e_start="8656" e_stop="8493"/>
          <exon e_start="8417" e_stop="8163"/>
          <exon e_start="7788" e_stop="7667"/>
          <exon e_start="7577" e_stop="7456"/>
          <exon e_start="6766" e_stop="6725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTGGAAGGACGTGTTAAGGAAGGAAGAATGACTCAAGAGCATTATAAAAAAGCGTGCACGCTTTTAAAGGGTGTTTTGAGCTATGATAACTTCAAAGATGTGGATCTAGTCATAGAGGTAGGTTGTTGTAGGATTTTTGAAAAGCATTACACTGAATCACTTGATCAATTCAAAGATATTCTAGTCTATCCTTTCTTTCTAAGTTGAAGCTACAGTTTTTGCTAGTGTGCTGCTGCGTAACGAGCATATATGTTATTTTTTTGTATGGATTCGTATTCTTGGAGATAGTAATAATCATCAACCGATCAAAAATTTATCCATATCCATGTAAAAGTTTTAATGACCCAAATCCATGTAAAAGTTCAGGGGCTCTTTGATTTGAAAGAGAAGTTCAAAACTTCTCAAGATAGTTTTTGTTACTAACCAGTAACCGCTTCATAGACAAATTTCCAATGGTAAAATATTGAACTTTTATATGCTGGTATGTAATATAAATGTAAAACAGGAAGTTTCTCAGAAGTACTTTGCATAAATATAAATTAATAAATATTTTAAACTGTATTATTCTCATTGATATGGTAGAGAGTAAAAGGCATGCCAGAGAAGTCTCAGATGAGTAATCTATTGAAGTGTTTAACCATCTCATCTAAAAGCTTAAGCTGTTAGCGAGAAGAGCACACTTTTATTATTTAATTATATTCTCAACGCGCCCCCTCACGTGCGGGCTTGATTTTTTTATGGGCCAAGCACGTGGAAAATCGGGTGTTAACTTTGTATTGAGAAGCAGTCTTTTATCCAGTCCTTTCGGGTGTTAACTTTGTGTTAATCTTTATCTAGTAGTCATGTTAATGTTTTATCATGAAAATGGCCGTTCCAAGAGTATCTATCATGAGTCACGAAAGGCTGAAACAGAAGAGTTGTATAGATACACAAGACTGAGTAGAAAATGGAACCTACATGTTTGTTGCAGATTACTTGTAGAAATGACAATGATACTTATCAGATTGACTCAGATGCAGACTTCTCATTTGTTTCTTCTTCTTGATTAATAGGACATGCCTGACATTGTGTCCTTGAAGCAGCAATTTTTTGCTGATCTTGATGAATGTTGCCCTCATCACTGCATTTTTGCTTCAACTACTTGTATAGTCAACTTAGATTTGATTGGAGAAAGGATGAAACCATGTAGGGAGATTGTTGGGATCCACTTTTTTAGGTAAAGGTGAATCAAGCAAGCGTAGTATATCTGCTGATACATATGAGTTAAGGCTTGCTTGTTACTTGGCTGCAGCTCACCCTCTGTCACTGATCTCCTGGAAATTGTCCGAACAAAGAGGACATCCCCTCAAACGCTTGTTGATCTGTTAAACTTTGGAAGGAGGATTCAAAAGACTCCTATTGTAGTTCAGAATTGTACAGGTTTTGCAGTCAGACATATGTGCTTCCCCTACTTGCAGGCAGCGATGCTTCTTGTTGAACATGGTGCTGATGTGTATCAGATTGATAAGGCGCTTACCAGCTTTGGGTTGAAACTGGGTCCATTTAGGTGCATATTCCATTTAACATCCTATGAATGTGAAATCGATTTGATCGAGTTGTGCTCTTCAATAGAACCCTCAGTTTCTCCATACAGTCGAACTCATAATAAAAGAAATATGAGTTTCCTTATGGTTTAACATAAAGCTACCAAAATGTTCCAGCACTAATGGATGTTGATTCAAAATCTGATCATACAGAAGGAGAAGCTTATTCATTTAAATACTAAATAAAGGTTATATGACACACATTTCTCATGTGGATAATCCACCAATGATGAATGTGATCTTCAGCATTTTTTTTATATCGCTCCACTTGGAGTGCAAGACATCTTCTGTCGTTGCTTCCATTTCTTTTGGTTGATGTTGGCAATGTCAACTGCAGAATGCTTGATCAAGATGGATTCCTGTCTGCAGCTGTGCATGATGTGAAATTCCTTGAGACTTTTCCAGATAGATCTTACAAATCGAATTTGATTCCAATCATGAGGAAAAATAACGGTGAAGGTAATGTGCACTTCCTTCTTGTCATCAGGACCTGAATTGTTTTTGTCATCAGATTTTCTTGAATTTCTCACAAATGGAATGTGTACTAGGTAAATACTCTTGCCAGGGCTTCTACACATACAATGACAAGGAAGAGGCAAGCCCAGATCCCGAAATATCAAAATATATAGAAATGGCGAGAAGTATGTCTGGTATCACCATTAGATCAAAGGTCTTCTCTCTCTCTCTCTCTGTCTCTCAGTTAACTGTCTTTTGGTCCTTCTATTGAAAGTTCTCTAGTAATCTTCCGACTGCACTTATCTTGAAGAAAGTATGAGGCTTATTGCTATGTACTATTTGGCTTTGGGAAAAAATAGAAAACATAAATAATGTTCATGATATAACCATAAAGCGGAACACCAAGATATGGTAATCAACAAGAATATAAAAAGAACGATAATGACACTAAGACTATTTATCGTTCAGTTAATTCTCAAAATGGCATGACTTTTGAGAAGGGAAGTGTCTTTTGATGTTTGTTTTTGTAATCATATACAGGATTCTTAATTTGTACAAAGAAAACAAAAAGAAGAGTAACTAGATAAACTGATCATTCTAATGTAAGAGACGTGCACATCACCGGGCTTATGTCCCCTCTTTATATAGGCAAATAGATTCTTCCTCTAATTGGTCACTTGCAAACAGTTCAACCTGTGTTTATTTGTTGTCTATCCGTTCTTTCATGATTGTAGATTTTGATAAATGATTCAGATTGTTTGAATGCCAAATTGTAGTTGGAATGAATATAATGCATTTACCAATCATTTGAACAAAATAAATTTTTGGAAAGGTCTTTGAATGTTTCCTTTCTATCTATCAATTTATGACTTGGTGCACGTCTGAACAATCAACTTGGTACAGTTGGCAACGTTGTCCGATGGAGAAATTGTTGAGATGATTCTT</genome_strand>
        <mrna_strand>CAATTTGGAAGGACGTGTTAAGGAAGGAAGAATGACTCACGAGCATTATAAAAAAGCGTGCACGCTTTTAAAGGGTGTTTTGAGCTATGATAACTTCAAAGATGTGGATCTAGTCATAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATGCCTGACATTGTGTCCTTGAAGCAGCAATTTTTTGCTGATCTTGATGAATGTTGCCCTCATCACTGCATTTTTGCTTCAACTACATGTATAGTCAACTTAAATTTGATTGGAGAAAGGATGAAACCATGTAAGGAGATTGTTGGGATCCACTTTTTTAG...........................................................................CTCACCCTCTGTCACTGATCTCCTGGAAATTGTCCGAACAAAGAGGACATCCCCTCAAACGCTTGTTGATCTGTTAAACTTTGGAAGGAGGATTCAAAAGACTCCTATTGAAGTTCAGAATTGTACAGGTATTGCAGTCAGACATATGTGCTTCCCCTACTTGCAGGCAGCGATGCTTCTTGTTGAACATGGTGCTGATGTGTATCAGATTGATAAGGCGCTTACCAGCTTTGGGTTGAAACTGGGTCCATTTAG......................................................................................................................................................................................................................................................................................................................................................................................AATGCTTGATCAAGATGGATTCCTGTCTGCAGCTGTGCATGATGTGAAATTCCTTGAGACTTTTCCAGATAGATCTTACAAATCGAATTTGATTCCAATCATGAGGAAAAATAACGGTGAAG.........................................................................................GTAAATACTCTTGCCAGGGCTTCTACACATACTATGACAAGGAAGAGGCAAGCCCAGATCCCGAAATATCAAAATATATAGAAATGGCGAGAAGTATGTCTGGTATCACCATTAGATCATAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCAACGTTGTCCGATGGAGAAATTGTTGAGATGATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E465841" ref_strand="+" ref_description="SGN-E465841 [cPRO-22-M4]">
      <seq>attaaatcaaaggtcttctctctctctttcactcagttaactgtctttttgatccttctattgaaagttctctagtaatcttccgactgaacttatcttgaagaaagtatgcggcttattgctatgtattatttggctttggaaaaaatagaacacataaataatgttcatgatataaccataaagcagaacaccaagatatggtaatcaacaagaataaaaaaaagaatgataatgacactaagactatttatcattcagttaattctcgaaatggcatgacttttgagaagggaagtgtattttgatgtttgtttttgtaatcaaattcaggattcttaatttgtaaaatgcaaaaaaaaagaagaagagtaactagataaatgatcattttaatgtaagagacgtgccacatcaccgggcttatgtcccctctttatataaacaaatagattgttcctctaattggtcccttgcaaacagttcaacctgtgtttatttgttgtctatccgttctttgatgattgtagatttgataaatgattcaaattgtttgaatgccaaattgtagttggagcgcatataatgcatttaccatatatcatatgaacaaaatatatttttgggaaggtcgttgaatgcttcctttctatctatcaatttatgacttagtgcacgtctgaacaatcaacttggtacagttggcaacgttgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7749" stop="6453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7467" g_stop="6753" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="715" r_length="715" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E465841" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E465841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7467" e_stop="6753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGATCAAAGGTCTTCTCTCTCTCTCTCTCTGTCTCTCAGTTAACTGTC-TTTTGGTCCTTCTATTGAAAGTTCTCTAGTAATCTTCCGACTGCACTTATCTTGAAGAAAGTATGAGGCTTATTGCTATGTACTATTTGGCTTTGGGAAAAAATAGAAAACATAAATAATGTTCATGATATAACCATAAAGCGGAACACCAAGATATGGTAATCAACAAGAAT-ATAAAAAGAACGATAATGACACTAAGACTATTTATCGTTCAGTTAATTCTCAAAATGGCATGACTTTTGAGAAGGGAAGTGTCTTTTGATGTTTGTTTTTGTAATCATATACAGGATTCTTAATTTGTACAAAG--AAAACAAA-AAGAAGAGTAACTAGATAAACTGATCATTCTAATGTAAGAGACGTG-CACATCACCGGGCTTATGTCCCCTCTTTATATAGGCAAATAGATTCTTCCTCTAATTGGTCACTTGCAAACAGTTCAACCTGTGTTTATTTGTTGTCTATCCGTTCTTTCATGATTGTAGATTTTGATAAATGATTCAGATTGTTTGAATGCCAAATTGTAGTTGGAATGAATATAATGCATTTACC--A-ATCATTTGAACAAAATAAATTTTTGGAAAGGTCTTTGAATGTTTCCTTTCTATCTATCAATTTATGACTTGGTGCACGTCTGAACAATCAACTTGGTACAGTTGGCAACGTTGTC</genome_strand>
        <mrna_strand>ATTAAATCAAAGG---TCT-TCTCTCTCTCT-T-TCACTCAGTTAACTGTCTTTTTGATCCTTCTATTGAAAGTTCTCTAGTAATCTTCCGACTGAACTTATCTTGAAGAAAGTATGCGGCTTATTGCTATGTATTATTTGGCTTT-GGAAAAAATAGAACACATAAATAATGTTCATGATATAACCATAAAGCAGAACACCAAGATATGGTAATCAACAAGAATAAAAAAAAGAATGATAATGACACTAAGACTATTTATCATTCAGTTAATTCTCGAAATGGCATGACTTTTGAGAAGGGAAGTGTATTTTGATGTTTGTTTTTGTAATCAAATTCAGGATTCTTAATTTGTAAAATGCAAAAAAAAAGAAGAAGAGTAACTAGATAAA-TGATCATTTTAATGTAAGAGACGTGCCACATCACCGGGCTTATGTCCCCTCTTTATATAAACAAATAGATTGTTCCTCTAATTGGTCCCTTGCAAACAGTTCAACCTGTGTTTATTTGTTGTCTATCCGTTCTTTGATGATTGTAGA-TTTGATAAATGATTCAAATTGTTTGAATGCCAAATTGTAGTTGGAGCGCATATAATGCATTTACCATATATCATATGAACAAAATATATTTTTGGGAAGGTCGTTGAATGCTTCCTTTCTATCTATCAATTTATGACTTAGTGCACGTCTGAACAATCAACTTGGTACAGTTGGCAACGTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335990" ref_strand="+" ref_description="SGN-E335990 [cTOE-6-L3]">
      <seq>aatttggaaggacgtgttaaggaaggaagaatgactcaagagcattataaaaaagcgtgcacgcttttaaagggtgttttgagctatgataacttcaaagatgtggatctagtcatagaggacatgcctgacattgtgtccttgaagcagcaattttttgctgatcttgatgaatgttgccctcatcactgcatttttgcttcaactacttgtatagtcaacttagatttgattggagaaaggatgaaaccatgtagggagattgttgggatccacttttttagctcaccctctgtcactgatctcctggaaattgtccgaacaaagaggacatcccctcaaacgcttgttgatctgttaaactttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10011" stop="8035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9711" g_stop="9592" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9591" i_stop="8657" i_length="935">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8656" g_stop="8493" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="284" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8492" i_stop="8418" i_length="75">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8417" g_stop="8335" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="367" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E335990" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9711" e_stop="9592"/>
          <exon e_start="8656" e_stop="8493"/>
          <exon e_start="8417" e_stop="8335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTGGAAGGACGTGTTAAGGAAGGAAGAATGACTCAAGAGCATTATAAAAAAGCGTGCACGCTTTTAAAGGGTGTTTTGAGCTATGATAACTTCAAAGATGTGGATCTAGTCATAGAGGTAGGTTGTTGTAGGATTTTTGAAAAGCATTACACTGAATCACTTGATCAATTCAAAGATATTCTAGTCTATCCTTTCTTTCTAAGTTGAAGCTACAGTTTTTGCTAGTGTGCTGCTGCGTAACGAGCATATATGTTATTTTTTTGTATGGATTCGTATTCTTGGAGATAGTAATAATCATCAACCGATCAAAAATTTATCCATATCCATGTAAAAGTTTTAATGACCCAAATCCATGTAAAAGTTCAGGGGCTCTTTGATTTGAAAGAGAAGTTCAAAACTTCTCAAGATAGTTTTTGTTACTAACCAGTAACCGCTTCATAGACAAATTTCCAATGGTAAAATATTGAACTTTTATATGCTGGTATGTAATATAAATGTAAAACAGGAAGTTTCTCAGAAGTACTTTGCATAAATATAAATTAATAAATATTTTAAACTGTATTATTCTCATTGATATGGTAGAGAGTAAAAGGCATGCCAGAGAAGTCTCAGATGAGTAATCTATTGAAGTGTTTAACCATCTCATCTAAAAGCTTAAGCTGTTAGCGAGAAGAGCACACTTTTATTATTTAATTATATTCTCAACGCGCCCCCTCACGTGCGGGCTTGATTTTTTTATGGGCCAAGCACGTGGAAAATCGGGTGTTAACTTTGTATTGAGAAGCAGTCTTTTATCCAGTCCTTTCGGGTGTTAACTTTGTGTTAATCTTTATCTAGTAGTCATGTTAATGTTTTATCATGAAAATGGCCGTTCCAAGAGTATCTATCATGAGTCACGAAAGGCTGAAACAGAAGAGTTGTATAGATACACAAGACTGAGTAGAAAATGGAACCTACATGTTTGTTGCAGATTACTTGTAGAAATGACAATGATACTTATCAGATTGACTCAGATGCAGACTTCTCATTTGTTTCTTCTTCTTGATTAATAGGACATGCCTGACATTGTGTCCTTGAAGCAGCAATTTTTTGCTGATCTTGATGAATGTTGCCCTCATCACTGCATTTTTGCTTCAACTACTTGTATAGTCAACTTAGATTTGATTGGAGAAAGGATGAAACCATGTAGGGAGATTGTTGGGATCCACTTTTTTAGGTAAAGGTGAATCAAGCAAGCGTAGTATATCTGCTGATACATATGAGTTAAGGCTTGCTTGTTACTTGGCTGCAGCTCACCCTCTGTCACTGATCTCCTGGAAATTGTCCGAACAAAGAGGACATCCCCTCAAACGCTTGTTGATCTGTTAAACTTTG</genome_strand>
        <mrna_strand>AATTTGGAAGGACGTGTTAAGGAAGGAAGAATGACTCAAGAGCATTATAAAAAAGCGTGCACGCTTTTAAAGGGTGTTTTGAGCTATGATAACTTCAAAGATGTGGATCTAGTCATAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATGCCTGACATTGTGTCCTTGAAGCAGCAATTTTTTGCTGATCTTGATGAATGTTGCCCTCATCACTGCATTTTTGCTTCAACTACTTGTATAGTCAACTTAGATTTGATTGGAGAAAGGATGAAACCATGTAGGGAGATTGTTGGGATCCACTTTTTTAG...........................................................................CTCACCCTCTGTCACTGATCTCCTGGAAATTGTCCGAACAAAGAGGACATCCCCTCAAACGCTTGTTGATCTGTTAAACTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573431" ref_strand="+" ref_description="SGN-E573431 [32741]">
      <seq>tttttaaatatcaaaaagaatattgtcattttcttcgttgtttatttgcttattatgatggtagattatctattacttctgatatgggacgtagtcctaatggtaatgattattttacaattactgtccattggattgaccatgaatggaacatgcaaaaacgaatattaggatataaatatgttgaagaaactaaaaccggtgcttatatagcaacaaaaataggccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17655" stop="16826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17355" g_stop="17125" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E573431" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>231</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E573431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17355" e_stop="17125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTAAATATCAAAAAGAATATTCTCATTTTCTTTGTTGTTTATTTGCTTATTATGATGGTAGAGTATCTATTACTTCTGATATGGGACGTAGTCCTAATGGTAACGATTATTTAACACTTACTGTCCATTGGATTGACCATGAATGGAACATGCAAAAACGAATATTAGCGTATAAATATGTTGAAGAAACTAAAACCGGTTCTTATATAGCATCAAAAGTAGGCTCTA</genome_strand>
        <mrna_strand>TTTTTAAATATCAAAAAGAATATTGTCATTTTCTTCGTTGTTTATTTGCTTATTATGATGGTAGATTATCTATTACTTCTGATATGGGACGTAGTCCTAATGGTAATGATTATTTTACAATTACTGTCCATTGGATTGACCATGAATGGAACATGCAAAAACGAATATTAGGATATAAATATGTTGAAGAAACTAAAACCGGTGCTTATATAGCAACAAAAATAGGCCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441359" ref_strand="+" ref_description="SGN-E441359 [cSTA-30-K5]">
      <seq>gatctttagtatggaaatttttagtacaaaatgaggaaaaaactactgttacttgtacgaaatgtaaattgatcatgaaacatgtaactacgggtacacaagggggaacgggacgactaagaacacatttgagaaagtgtaataaagaatttgctcgcctagatgatatagaaagggctaatagaaatggaatacctcaacctgaaaattctatgggagctggaggttctaatatggttcaaagtgaattaaatatgactaacccggctagccgaagcacacaccgcacatatagtaaagaaaaagatcgtagagaattagctaaaatggttgctgtttgtggtttgcctttttcatttccttcacatcctggttttattcagtatattcgggaattgtataacccagattatgaaggtattccaagaagtacaattaaaagtgatctttttaaatatcaaaaagaatattgtcattttcttcgttgtttatttgcttattatgatggtagattatctattacttctgatatgggacgtagtcctaatggtaatgattattttacaattactgtccattggattgaccatgaatggaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18102" stop="16902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17802" g_stop="17202" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="601" r_length="601" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E441359" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E441359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17802" e_stop="17202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCATTAGTATGGAAATTTTTGATACAAAATGAGGAGAAAACTATTTTTAAGTGCACTAAATGTAAATTGATAATGAAACATGTAACTACGGGTACACAAGGGGGAACGGGACGACTAAGAACACATTTACGAAAGTGTAATAAAGAATTTACTCGCCTAGATGATATAGAAAGAGATAATAGAAATGGAACACCCATACCTGAAAGTTCTATAGATGTTGGAGGTTCTAATATGGTTCAAGGTGTATTAAATATGTTTAACCCGGCTAGTCGAAGCACACACTGCACGTGTAGTAAAGAAAAAGATCGTAGAGAATTAGCTAAAATGGTTGTTGTTTGTGGTTTACCTTTTTCATTTCCTTCTCATCCTGGTTTTGTTCATTATATTCGAGAATTATATAACCCAGATTATGAAGGTATTCCAAGAAATACAATTAAAAGTGATCTTTTTAAATATCAAAAAGAATATTCTCATTTTCTTTGTTGTTTATTTGCTTATTATGATGGTAGAGTATCTATTACTTCTGATATGGGACGTAGTCCTAATGGTAACGATTATTTAACACTTACTGTCCATTGGATTGACCATGAATGGAACAT</genome_strand>
        <mrna_strand>GATCTTTAGTATGGAAATTTTTAGTACAAAATGAGGAAAAAACTACTGTTACTTGTACGAAATGTAAATTGATCATGAAACATGTAACTACGGGTACACAAGGGGGAACGGGACGACTAAGAACACATTTGAGAAAGTGTAATAAAGAATTTGCTCGCCTAGATGATATAGAAAGGGCTAATAGAAATGGAATACCTCAACCTGAAAATTCTATGGGAGCTGGAGGTTCTAATATGGTTCAAAGTGAATTAAATATGACTAACCCGGCTAGCCGAAGCACACACCGCACATATAGTAAAGAAAAAGATCGTAGAGAATTAGCTAAAATGGTTGCTGTTTGTGGTTTGCCTTTTTCATTTCCTTCACATCCTGGTTTTATTCAGTATATTCGGGAATTGTATAACCCAGATTATGAAGGTATTCCAAGAAGTACAATTAAAAGTGATCTTTTTAAATATCAAAAAGAATATTGTCATTTTCTTCGTTGTTTATTTGCTTATTATGATGGTAGATTATCTATTACTTCTGATATGGGACGTAGTCCTAATGGTAATGATTATTTTACAATTACTGTCCATTGGATTGACCATGAATGGAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478659" ref_strand="+" ref_description="SGN-E478659 [cSTD-6-M4]">
      <seq>cacagaaccagccatggagaatatacagcacaaaaatctctctgtaaacggcataaatatgcacgtagctgaaattggtgaaggcccatcaacaatactattcctccatggtttccctgaactctggtatacatggcgtcaccaactgatttcactttcatccaaaggttaccgcgcaatagctccagatctacgtggctatggcgatacagattctcccccttctccttctagctataccgtttttcatattgttggtgaccttattgcccttctagatgctctgggtctcgatcaggtgttccttgttggacatgattggggtgctgttatagcttggcatgtatgccttttgcgacctgataggatcaaagcactggttaatatgagcgttgtcttccaccccaggaaccccaagagaaagcctattgaatctatgcgtgctgtcctcggggatgattactatatttgcagatttcaggaatatggagaggcagaagaggagttttctcgtgttgataccgcaagactaatcgcgaaatttttaacatcacgcaatccagctcctctttcgtgtgcctaaagagaaagggatttgggggttcacctcatactcccattacattgccatctttggttgtcagaagaaggatgtcactactatgccaacaagttcagacagtcaggtttcactggntgattaaactactatcgagctatggacctaaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25325" stop="29475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25625" g_stop="25922" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25923" i_stop="27186" i_length="1264">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27187" g_stop="27369" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="481" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27370" i_stop="28933" i_length="1564">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28934" g_stop="29175" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="726" r_length="245" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E478659" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25625" e_stop="25922"/>
          <exon e_start="27187" e_stop="27369"/>
          <exon e_start="28934" e_stop="29175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGAACCAGCCATGGAGAATATACAGCACAAAAATCTCACTGTAAACGGCATAAATATGCACATAGCTGAAATTGGTGAAGGCCCATCAACAATACTATTCCTTCATGGTTTCCCTGAACTCTGGTATTCATGGCGTCACCAACTGATTTCACTTTCATCCAAAGGTTACCGCGCAATAGCACCAGATCTACGTGGTTATGGCGATACAGATTCTCCCCCTTCTCCTTCTAGCTATACCGTTTTTCATATTGTTGGTGACCTTATTGCCCTTCTAGATGCTCTGGGTCTCGATCAGGTTTGAGGCGAATCTAGAGTTTAAATTTCTAATATATTTGATAGTGAGTTTACGAAGTTAGTGATATGTATATTTGAGTAATTACAGGGAAATATAGGATTTAGTGAAAGTTAGTGTACTACTTAGTTCTCGTTAAGCAATAGAAACTTGAAGTTTGAGTTTTTGATGTTGTGATTTTTTGAACATGTATTTAAATGTAGTACACTTCATTCTACATGACGTCCTACATGTATCCTGTCACATGGAACATAGAACATGTATATGTATGTGTGTTCGTTCAATTTTATACAAGTTTAAGTGTTTACTCCTGTGATTCCAAAGTTGGAGGACATAGACATCACTTGAGACCAAGTTAAATGTCATATTTATGTACCATGTCTAAAAATAAGGTTCCCCTTTAGTAGAGTTCTGTATATCTAAGTGTATAGTATAGTTCGAGTAATTACAGGACGATCTAGGATTTACATACTGTGGTGCACAAGTCAACTAATTATATATGGAGGACACATCAATTAATGGATGTACTGTATGGATGATTTTGTATTTTTTGTTTTAACTTTTTTATGTAATAGGAAGTTAACCTTTTATAGTAGGTTAGCCAGCATTTTTTCTAGGTTATTAATTGATGTTTATTATTGCTTATCACTCTGAAAAAAAATGCTTATTCCATTTCTTTGATGAACACAAACTTTTTCACAGATTCTGCTTTCACATTTGCTTGAGCGTCAAATACCCTGGATATAATTCATCTTCAAATATGATTCTGTCTATTTGCCACCTAAAGTGAGTGTTTTGTGGCGTTGTAGAAATGATTGTACAGGAAGGAACTAGATACATTAGAGAGAGAAAAAAGATGATAATGATAAATTATTAAAGTTAGGGTATAAGCAGGGGCTTCTAGCGGGGTGGCTTTTCTAGATGTTCCAGATTTAAGCCTCCAACTCTATGTTATAGCCTTCAGGAGTCACATAGGCGCTCCTACCAAGTAGAATAGTTATGATATTTCCATCAAGATCAAAGTCTAAGAAGACATTATGTTGAACGATTCGCACCGACTTGACTGGCATGATAGATGGATTGGTAGTTTCTGTTATTTTCAGTTAGGACCTTGTCTCCTTTTTTATCTTCCACTCTCTTTGTAATTTGCCCGTAATTATGTTAATACTTGACCTGATTGTATAATGATTAGTGCATAGTTGGAGTTCCAAACAGTGGTTGCACATGCATTTTTTATATAAATATTTTATTTGCCTCTTTGAATTAGGTGTTCCTTGTTGGACATGATTGGGGTGCTGTTATAGCTTGGCATGTATGCCTTTTGCGACCTGATAGGATCAAAGCACTGGTTAATATGAGCGTTGTCTTCCACCCCAGGAACCCCAAGAGAAAGCCTATTGAATCTATGCGTGCTGTCCTCGGGGATGATTACTATATTTGCAGATTTCAGGTTTCTTGCAGCATCCTTCTCTCCTTTGTTTTTCTTCTATCAACTGTTACATTATTTTCCGTTAGCTCCATTAATTTCAGCTTGGATAAAGGAGGGGATGTTAAGTTGACCGGAGACTCGAAATAGTCTAATGGAGGAAAATATATGTAGTTCATTCACATAGGGGACCTCAATTAAAAATTGTCTGAAAAAGTTTAAGCTAGTGTTTGACCAGAGATTTTGGGAGTAGCTATTAAAAAAATTATCTTTAAATATCTGACCGTGAAAATGTGATCTTCATATATTTTCTAGTTTTGGGACTTCCACTTATATACTTATAAAAATTCAAGTAATATGCATGTTCAAATATAACTTCAATTTTCAAAATCACAACTTCGAAAATTCAAATTTTCAAGTTTCAACTTCAAAAACAGGAGCTAAGGATTCATATAGCTGCCTGCAACTAATTACGGATTGAAGAGATTTTTTTATGATCTTCCTTACTGCATGCACTTACGGATAAAGTGAAGATTTTGGTGATATCATTGCTTCCAATTATTTTATGTCAAATAACTTTTGTGGAAATTCAATGTTCGAATTGTTTTGAGTGCTCATATAGGTTCTGCTATTCTGGGACTTCAAATATGTGATATCTGGCATAAGGTTTCTGAATTTGCTGTCTGCCTTTCGTAAGCTATGTTATTACTCCTTCGGTTTCAATTTGTTTGTATAGTATTGACTTGATATGAAGTTTAAGAAAGTATGGAAGACTTTTAAATTTTGTGGTCTTAAACTAAAGATATTAGAATGTACCAAAATGTTCTTTAATCTTGTGGTGTTAAATATGTCATTTGGAAAATTGGAATTAAAGAGTTGCCTAGAAGGAAGGAAGCATTGTTTTTTTAAACGAACTGAAAAAGGAAAGTAAGAGTCCATGCTTATGATTATTGTCCAGAAGTAGCTGTTGATGCAATTTTCCACTGCACTGCGCACAAAATTTAAGCATTGTTCTGGTCAAGACGTAAAAGACACTCATCTTACTCTGTTTCTTGAATTGTAACTTAGGATCCACACCATGATAAAATACTATCCTCATGATTAGACCGAGTCCCTTTAGATTTTATAAAGTACTCATTAGTGTCCCCATTCTCACCATTCAGCTTTGTTCTAAAAATTTGTTAAATATTTTTTCAATTACTATGCTATCGTGATTTTGATTGCTTAATCCAAGTAAAGTATTTTCTTTTTTTGTATGCTTATATAGGAAACTGAGGAGAACAGAAACTTTTTTCACTTGTATTTGTGTAAAAAGAACATGCTATTTGCATAGGTAGTTCGCAAATTTTTTGGGAAGCTCTGTGTTAAGAACTTATACTTCTTTAGCACCATCTTGTTATATAGAATTTTTATGACCTTTTGATTTATCATTTGAAGAAAAGGGTCTTATGTTAGAGTTAAATCATAAAAACAAAAGAAAAACCTAGCTGTTACAAATTTGATGAATTCCGGTGGTTCTCCCTCATCGCTGAAGACGTTATTTAATCATCGCTGCTGAAATCACCCTTTCAAATGTGTTGTTTCTTAGGAATATGGAGAGGCAGAAGAGGAGTTTGCTCGTGTTGATACCGCTAGACTAATCGCGAAATTTTTAACATCACGCAATCCAGCTCCTC-TTCGTGTGCCTAAAGAGAAA-GGATTTGGGGGTTCACCACATACTCCCATTACATTGCCATC-TTGGTTGTCAGAAG-AGGATGTCAACTACTATGCCAACAAGTTCAGACAGTCAGGTTTTACTGGTGGATTAAACTACTATCGAGCTATGGACCT</genome_strand>
        <mrna_strand>CACAGAACCAGCCATGGAGAATATACAGCACAAAAATCTCTCTGTAAACGGCATAAATATGCACGTAGCTGAAATTGGTGAAGGCCCATCAACAATACTATTCCTCCATGGTTTCCCTGAACTCTGGTATACATGGCGTCACCAACTGATTTCACTTTCATCCAAAGGTTACCGCGCAATAGCTCCAGATCTACGTGGCTATGGCGATACAGATTCTCCCCCTTCTCCTTCTAGCTATACCGTTTTTCATATTGTTGGTGACCTTATTGCCCTTCTAGATGCTCTGGGTCTCGATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCCTTGTTGGACATGATTGGGGTGCTGTTATAGCTTGGCATGTATGCCTTTTGCGACCTGATAGGATCAAAGCACTGGTTAATATGAGCGTTGTCTTCCACCCCAGGAACCCCAAGAGAAAGCCTATTGAATCTATGCGTGCTGTCCTCGGGGATGATTACTATATTTGCAGATTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATGGAGAGGCAGAAGAGGAGTTTTCTCGTGTTGATACCGCAAGACTAATCGCGAAATTTTTAACATCACGCAATCCAGCTCCTCTTTCGTGTGCCTAAAGAGAAAGGGATTTGGGGGTTCACCTCATACTCCCATTACATTGCCATCTTTGGTTGTCAGAAGAAGGATGTC-ACTACTATGCCAACAAGTTCAGACAGTCAGGTTTCACTGGNTGATTAAACTACTATCGAGCTATGGACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576305" ref_strand="+" ref_description="SGN-E576305 [59502]">
      <seq>caaagaaccagccatggagaatatacagcacaaaaatctctctgtaaacggcataaatatgcacgtagctgaaattggtgaaggcccatcaacaatactattcctccatggtttccctgaactctggtatacatggcgtcaccaactgatttcactttcatccaaaggttaccgcgcaatagctccagatctacgtggctatggcgatacagattctcccccttctccttctagctataccgtttttcatattgttggtgaccttattgcccttctagatgctctgggtctcgatcaggtgttccttgttggacatgattggggtgctgttatagcttggcatgtatgccttttgcgacctgataggatcaaagcactggttaatatgagcgttgtcttccagcgcaggaaccccaagagaaagcctattgaatctttgcgtgctgtcctcggggatgattactatatttgcagatttcaggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25325" stop="27670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25625" g_stop="25922" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25923" i_stop="27186" i_length="1264">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27187" g_stop="27369" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="481" r_length="183" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E576305" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E576305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25625" e_stop="25922"/>
          <exon e_start="27187" e_stop="27369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGAACCAGCCATGGAGAATATACAGCACAAAAATCTCACTGTAAACGGCATAAATATGCACATAGCTGAAATTGGTGAAGGCCCATCAACAATACTATTCCTTCATGGTTTCCCTGAACTCTGGTATTCATGGCGTCACCAACTGATTTCACTTTCATCCAAAGGTTACCGCGCAATAGCACCAGATCTACGTGGTTATGGCGATACAGATTCTCCCCCTTCTCCTTCTAGCTATACCGTTTTTCATATTGTTGGTGACCTTATTGCCCTTCTAGATGCTCTGGGTCTCGATCAGGTTTGAGGCGAATCTAGAGTTTAAATTTCTAATATATTTGATAGTGAGTTTACGAAGTTAGTGATATGTATATTTGAGTAATTACAGGGAAATATAGGATTTAGTGAAAGTTAGTGTACTACTTAGTTCTCGTTAAGCAATAGAAACTTGAAGTTTGAGTTTTTGATGTTGTGATTTTTTGAACATGTATTTAAATGTAGTACACTTCATTCTACATGACGTCCTACATGTATCCTGTCACATGGAACATAGAACATGTATATGTATGTGTGTTCGTTCAATTTTATACAAGTTTAAGTGTTTACTCCTGTGATTCCAAAGTTGGAGGACATAGACATCACTTGAGACCAAGTTAAATGTCATATTTATGTACCATGTCTAAAAATAAGGTTCCCCTTTAGTAGAGTTCTGTATATCTAAGTGTATAGTATAGTTCGAGTAATTACAGGACGATCTAGGATTTACATACTGTGGTGCACAAGTCAACTAATTATATATGGAGGACACATCAATTAATGGATGTACTGTATGGATGATTTTGTATTTTTTGTTTTAACTTTTTTATGTAATAGGAAGTTAACCTTTTATAGTAGGTTAGCCAGCATTTTTTCTAGGTTATTAATTGATGTTTATTATTGCTTATCACTCTGAAAAAAAATGCTTATTCCATTTCTTTGATGAACACAAACTTTTTCACAGATTCTGCTTTCACATTTGCTTGAGCGTCAAATACCCTGGATATAATTCATCTTCAAATATGATTCTGTCTATTTGCCACCTAAAGTGAGTGTTTTGTGGCGTTGTAGAAATGATTGTACAGGAAGGAACTAGATACATTAGAGAGAGAAAAAAGATGATAATGATAAATTATTAAAGTTAGGGTATAAGCAGGGGCTTCTAGCGGGGTGGCTTTTCTAGATGTTCCAGATTTAAGCCTCCAACTCTATGTTATAGCCTTCAGGAGTCACATAGGCGCTCCTACCAAGTAGAATAGTTATGATATTTCCATCAAGATCAAAGTCTAAGAAGACATTATGTTGAACGATTCGCACCGACTTGACTGGCATGATAGATGGATTGGTAGTTTCTGTTATTTTCAGTTAGGACCTTGTCTCCTTTTTTATCTTCCACTCTCTTTGTAATTTGCCCGTAATTATGTTAATACTTGACCTGATTGTATAATGATTAGTGCATAGTTGGAGTTCCAAACAGTGGTTGCACATGCATTTTTTATATAAATATTTTATTTGCCTCTTTGAATTAGGTGTTCCTTGTTGGACATGATTGGGGTGCTGTTATAGCTTGGCATGTATGCCTTTTGCGACCTGATAGGATCAAAGCACTGGTTAATATGAGCGTTGTCTTCCACCCCAGGAACCCCAAGAGAAAGCCTATTGAATCTATGCGTGCTGTCCTCGGGGATGATTACTATATTTGCAGATTTCAG</genome_strand>
        <mrna_strand>CAAAGAACCAGCCATGGAGAATATACAGCACAAAAATCTCTCTGTAAACGGCATAAATATGCACGTAGCTGAAATTGGTGAAGGCCCATCAACAATACTATTCCTCCATGGTTTCCCTGAACTCTGGTATACATGGCGTCACCAACTGATTTCACTTTCATCCAAAGGTTACCGCGCAATAGCTCCAGATCTACGTGGCTATGGCGATACAGATTCTCCCCCTTCTCCTTCTAGCTATACCGTTTTTCATATTGTTGGTGACCTTATTGCCCTTCTAGATGCTCTGGGTCTCGATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCCTTGTTGGACATGATTGGGGTGCTGTTATAGCTTGGCATGTATGCCTTTTGCGACCTGATAGGATCAAAGCACTGGTTAATATGAGCGTTGTCTTCCAGCGCAGGAACCCCAAGAGAAAGCCTATTGAATCTTTGCGTGCTGTCCTCGGGGATGATTACTATATTTGCAGATTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453589" ref_strand="+" ref_description="SGN-E453589 [cSTS-20-D5]">
      <seq>acagaaccagccatggagaatatacagcacaaaaatctctctgtaaacggcataaatatgcacgtagctgaaattggtgaaggcccatcaacaatactattcctccatggtttccctgaactctggtatacatggcgtcaccaactgatttcactttcatccaaaggttaccgcgcaatagctccagatctacgtggctatggcgatacagattctcccccttctccttctagctataccgtttttcatattgttggtgaccttattgcccttctagatgctctgggtctcgatcaggtgttccttgttggacatgattggggtgctgttatagcttggcatgtatgccttttgcgacctgataggatcaaagcactggttaatatgagcgttgtcttccaccccaggaaccccaagagaaagcctattgaatctatgcgtgctgtcctcggggatgattactatatttgcagatttcaggaatatggagaggcagaagaggagtttgctcgtgttgataccgcaagactaatcgcgaaatttttaacatcacgcaatccagctcctcttcgtgtgcctaaagagaaaggatttgggggttcacctcatactcccattacattgccatcttggttgtcagaagaggatgtcaactactatgccaacaagttcagacagtcaggttttactggtggnattaaactactatcgagctatggacctaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25326" stop="29475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25626" g_stop="25922" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25923" i_stop="27186" i_length="1264">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27187" g_stop="27369" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="480" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27370" i_stop="28933" i_length="1564">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28934" g_stop="29175" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="723" r_length="243" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E453589" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25626" e_stop="25922"/>
          <exon e_start="27187" e_stop="27369"/>
          <exon e_start="28934" e_stop="29175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGAACCAGCCATGGAGAATATACAGCACAAAAATCTCACTGTAAACGGCATAAATATGCACATAGCTGAAATTGGTGAAGGCCCATCAACAATACTATTCCTTCATGGTTTCCCTGAACTCTGGTATTCATGGCGTCACCAACTGATTTCACTTTCATCCAAAGGTTACCGCGCAATAGCACCAGATCTACGTGGTTATGGCGATACAGATTCTCCCCCTTCTCCTTCTAGCTATACCGTTTTTCATATTGTTGGTGACCTTATTGCCCTTCTAGATGCTCTGGGTCTCGATCAGGTTTGAGGCGAATCTAGAGTTTAAATTTCTAATATATTTGATAGTGAGTTTACGAAGTTAGTGATATGTATATTTGAGTAATTACAGGGAAATATAGGATTTAGTGAAAGTTAGTGTACTACTTAGTTCTCGTTAAGCAATAGAAACTTGAAGTTTGAGTTTTTGATGTTGTGATTTTTTGAACATGTATTTAAATGTAGTACACTTCATTCTACATGACGTCCTACATGTATCCTGTCACATGGAACATAGAACATGTATATGTATGTGTGTTCGTTCAATTTTATACAAGTTTAAGTGTTTACTCCTGTGATTCCAAAGTTGGAGGACATAGACATCACTTGAGACCAAGTTAAATGTCATATTTATGTACCATGTCTAAAAATAAGGTTCCCCTTTAGTAGAGTTCTGTATATCTAAGTGTATAGTATAGTTCGAGTAATTACAGGACGATCTAGGATTTACATACTGTGGTGCACAAGTCAACTAATTATATATGGAGGACACATCAATTAATGGATGTACTGTATGGATGATTTTGTATTTTTTGTTTTAACTTTTTTATGTAATAGGAAGTTAACCTTTTATAGTAGGTTAGCCAGCATTTTTTCTAGGTTATTAATTGATGTTTATTATTGCTTATCACTCTGAAAAAAAATGCTTATTCCATTTCTTTGATGAACACAAACTTTTTCACAGATTCTGCTTTCACATTTGCTTGAGCGTCAAATACCCTGGATATAATTCATCTTCAAATATGATTCTGTCTATTTGCCACCTAAAGTGAGTGTTTTGTGGCGTTGTAGAAATGATTGTACAGGAAGGAACTAGATACATTAGAGAGAGAAAAAAGATGATAATGATAAATTATTAAAGTTAGGGTATAAGCAGGGGCTTCTAGCGGGGTGGCTTTTCTAGATGTTCCAGATTTAAGCCTCCAACTCTATGTTATAGCCTTCAGGAGTCACATAGGCGCTCCTACCAAGTAGAATAGTTATGATATTTCCATCAAGATCAAAGTCTAAGAAGACATTATGTTGAACGATTCGCACCGACTTGACTGGCATGATAGATGGATTGGTAGTTTCTGTTATTTTCAGTTAGGACCTTGTCTCCTTTTTTATCTTCCACTCTCTTTGTAATTTGCCCGTAATTATGTTAATACTTGACCTGATTGTATAATGATTAGTGCATAGTTGGAGTTCCAAACAGTGGTTGCACATGCATTTTTTATATAAATATTTTATTTGCCTCTTTGAATTAGGTGTTCCTTGTTGGACATGATTGGGGTGCTGTTATAGCTTGGCATGTATGCCTTTTGCGACCTGATAGGATCAAAGCACTGGTTAATATGAGCGTTGTCTTCCACCCCAGGAACCCCAAGAGAAAGCCTATTGAATCTATGCGTGCTGTCCTCGGGGATGATTACTATATTTGCAGATTTCAGGTTTCTTGCAGCATCCTTCTCTCCTTTGTTTTTCTTCTATCAACTGTTACATTATTTTCCGTTAGCTCCATTAATTTCAGCTTGGATAAAGGAGGGGATGTTAAGTTGACCGGAGACTCGAAATAGTCTAATGGAGGAAAATATATGTAGTTCATTCACATAGGGGACCTCAATTAAAAATTGTCTGAAAAAGTTTAAGCTAGTGTTTGACCAGAGATTTTGGGAGTAGCTATTAAAAAAATTATCTTTAAATATCTGACCGTGAAAATGTGATCTTCATATATTTTCTAGTTTTGGGACTTCCACTTATATACTTATAAAAATTCAAGTAATATGCATGTTCAAATATAACTTCAATTTTCAAAATCACAACTTCGAAAATTCAAATTTTCAAGTTTCAACTTCAAAAACAGGAGCTAAGGATTCATATAGCTGCCTGCAACTAATTACGGATTGAAGAGATTTTTTTATGATCTTCCTTACTGCATGCACTTACGGATAAAGTGAAGATTTTGGTGATATCATTGCTTCCAATTATTTTATGTCAAATAACTTTTGTGGAAATTCAATGTTCGAATTGTTTTGAGTGCTCATATAGGTTCTGCTATTCTGGGACTTCAAATATGTGATATCTGGCATAAGGTTTCTGAATTTGCTGTCTGCCTTTCGTAAGCTATGTTATTACTCCTTCGGTTTCAATTTGTTTGTATAGTATTGACTTGATATGAAGTTTAAGAAAGTATGGAAGACTTTTAAATTTTGTGGTCTTAAACTAAAGATATTAGAATGTACCAAAATGTTCTTTAATCTTGTGGTGTTAAATATGTCATTTGGAAAATTGGAATTAAAGAGTTGCCTAGAAGGAAGGAAGCATTGTTTTTTTAAACGAACTGAAAAAGGAAAGTAAGAGTCCATGCTTATGATTATTGTCCAGAAGTAGCTGTTGATGCAATTTTCCACTGCACTGCGCACAAAATTTAAGCATTGTTCTGGTCAAGACGTAAAAGACACTCATCTTACTCTGTTTCTTGAATTGTAACTTAGGATCCACACCATGATAAAATACTATCCTCATGATTAGACCGAGTCCCTTTAGATTTTATAAAGTACTCATTAGTGTCCCCATTCTCACCATTCAGCTTTGTTCTAAAAATTTGTTAAATATTTTTTCAATTACTATGCTATCGTGATTTTGATTGCTTAATCCAAGTAAAGTATTTTCTTTTTTTGTATGCTTATATAGGAAACTGAGGAGAACAGAAACTTTTTTCACTTGTATTTGTGTAAAAAGAACATGCTATTTGCATAGGTAGTTCGCAAATTTTTTGGGAAGCTCTGTGTTAAGAACTTATACTTCTTTAGCACCATCTTGTTATATAGAATTTTTATGACCTTTTGATTTATCATTTGAAGAAAAGGGTCTTATGTTAGAGTTAAATCATAAAAACAAAAGAAAAACCTAGCTGTTACAAATTTGATGAATTCCGGTGGTTCTCCCTCATCGCTGAAGACGTTATTTAATCATCGCTGCTGAAATCACCCTTTCAAATGTGTTGTTTCTTAGGAATATGGAGAGGCAGAAGAGGAGTTTGCTCGTGTTGATACCGCTAGACTAATCGCGAAATTTTTAACATCACGCAATCCAGCTCCTCTTCGTGTGCCTAAAGAGAAAGGATTTGGGGGTTCACCACATACTCCCATTACATTGCCATCTTGGTTGTCAGAAGAGGATGTCAACTACTATGCCAACAAGTTCAGACAGTCAGGTTTTACTGGTGG-ATTAAACTACTATCGAGCTATGGACCT</genome_strand>
        <mrna_strand>ACAGAACCAGCCATGGAGAATATACAGCACAAAAATCTCTCTGTAAACGGCATAAATATGCACGTAGCTGAAATTGGTGAAGGCCCATCAACAATACTATTCCTCCATGGTTTCCCTGAACTCTGGTATACATGGCGTCACCAACTGATTTCACTTTCATCCAAAGGTTACCGCGCAATAGCTCCAGATCTACGTGGCTATGGCGATACAGATTCTCCCCCTTCTCCTTCTAGCTATACCGTTTTTCATATTGTTGGTGACCTTATTGCCCTTCTAGATGCTCTGGGTCTCGATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCCTTGTTGGACATGATTGGGGTGCTGTTATAGCTTGGCATGTATGCCTTTTGCGACCTGATAGGATCAAAGCACTGGTTAATATGAGCGTTGTCTTCCACCCCAGGAACCCCAAGAGAAAGCCTATTGAATCTATGCGTGCTGTCCTCGGGGATGATTACTATATTTGCAGATTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATGGAGAGGCAGAAGAGGAGTTTGCTCGTGTTGATACCGCAAGACTAATCGCGAAATTTTTAACATCACGCAATCCAGCTCCTCTTCGTGTGCCTAAAGAGAAAGGATTTGGGGGTTCACCTCATACTCCCATTACATTGCCATCTTGGTTGTCAGAAGAGGATGTCAACTACTATGCCAACAAGTTCAGACAGTCAGGTTTTACTGGTGGNATTAAACTACTATCGAGCTATGGACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E455283" ref_strand="+" ref_description="SGN-E455283 [cSTS-25-J8]">
      <seq>agaaccagccatggagaatatacagcacaaaaatctctctgtaaacggcataaatatgcacgtagctgaaattggtgaaggcccatcaacaatactattcctccatggtttccctgaactctggtatacatggcgtcaccaactgatttcactttcatccaaaggttaccgcgcaatagctccagatctacgtggctatggcgatacagattctcccccttctccttctagctataccgtttttcatattgttggtgaccttattgcccttctagatgctctgggtctcgatcaggtgttccttgttggacatgattggggtgctgttatagcttggcatgtatgccttttgcgacctgataggatcaaagcactggttaatatgagcgttgtcttccaccccaggaaccccaagagaaagcctattgaatctatgcgtgctgtcctcggggatgattactatatttgcagatttcaggaatatggagaggcagaagaggagtttgctcgtgttgataccgcaagactaatcgcgaaatttttaacatcacgcaatccagctccccttcgtgtgcctaaagagaaaggatttgggggttcacctcatactcccattacattgccatcttggttgtcagaagaggatgtcaactactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25328" stop="29413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25628" g_stop="25922" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25923" i_stop="27186" i_length="1264">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27187" g_stop="27369" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="478" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27370" i_stop="28933" i_length="1564">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28934" g_stop="29113" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="658" r_length="180" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E455283" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E455283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25628" e_stop="25922"/>
          <exon e_start="27187" e_stop="27369"/>
          <exon e_start="28934" e_stop="29113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACCAGCCATGGAGAATATACAGCACAAAAATCTCACTGTAAACGGCATAAATATGCACATAGCTGAAATTGGTGAAGGCCCATCAACAATACTATTCCTTCATGGTTTCCCTGAACTCTGGTATTCATGGCGTCACCAACTGATTTCACTTTCATCCAAAGGTTACCGCGCAATAGCACCAGATCTACGTGGTTATGGCGATACAGATTCTCCCCCTTCTCCTTCTAGCTATACCGTTTTTCATATTGTTGGTGACCTTATTGCCCTTCTAGATGCTCTGGGTCTCGATCAGGTTTGAGGCGAATCTAGAGTTTAAATTTCTAATATATTTGATAGTGAGTTTACGAAGTTAGTGATATGTATATTTGAGTAATTACAGGGAAATATAGGATTTAGTGAAAGTTAGTGTACTACTTAGTTCTCGTTAAGCAATAGAAACTTGAAGTTTGAGTTTTTGATGTTGTGATTTTTTGAACATGTATTTAAATGTAGTACACTTCATTCTACATGACGTCCTACATGTATCCTGTCACATGGAACATAGAACATGTATATGTATGTGTGTTCGTTCAATTTTATACAAGTTTAAGTGTTTACTCCTGTGATTCCAAAGTTGGAGGACATAGACATCACTTGAGACCAAGTTAAATGTCATATTTATGTACCATGTCTAAAAATAAGGTTCCCCTTTAGTAGAGTTCTGTATATCTAAGTGTATAGTATAGTTCGAGTAATTACAGGACGATCTAGGATTTACATACTGTGGTGCACAAGTCAACTAATTATATATGGAGGACACATCAATTAATGGATGTACTGTATGGATGATTTTGTATTTTTTGTTTTAACTTTTTTATGTAATAGGAAGTTAACCTTTTATAGTAGGTTAGCCAGCATTTTTTCTAGGTTATTAATTGATGTTTATTATTGCTTATCACTCTGAAAAAAAATGCTTATTCCATTTCTTTGATGAACACAAACTTTTTCACAGATTCTGCTTTCACATTTGCTTGAGCGTCAAATACCCTGGATATAATTCATCTTCAAATATGATTCTGTCTATTTGCCACCTAAAGTGAGTGTTTTGTGGCGTTGTAGAAATGATTGTACAGGAAGGAACTAGATACATTAGAGAGAGAAAAAAGATGATAATGATAAATTATTAAAGTTAGGGTATAAGCAGGGGCTTCTAGCGGGGTGGCTTTTCTAGATGTTCCAGATTTAAGCCTCCAACTCTATGTTATAGCCTTCAGGAGTCACATAGGCGCTCCTACCAAGTAGAATAGTTATGATATTTCCATCAAGATCAAAGTCTAAGAAGACATTATGTTGAACGATTCGCACCGACTTGACTGGCATGATAGATGGATTGGTAGTTTCTGTTATTTTCAGTTAGGACCTTGTCTCCTTTTTTATCTTCCACTCTCTTTGTAATTTGCCCGTAATTATGTTAATACTTGACCTGATTGTATAATGATTAGTGCATAGTTGGAGTTCCAAACAGTGGTTGCACATGCATTTTTTATATAAATATTTTATTTGCCTCTTTGAATTAGGTGTTCCTTGTTGGACATGATTGGGGTGCTGTTATAGCTTGGCATGTATGCCTTTTGCGACCTGATAGGATCAAAGCACTGGTTAATATGAGCGTTGTCTTCCACCCCAGGAACCCCAAGAGAAAGCCTATTGAATCTATGCGTGCTGTCCTCGGGGATGATTACTATATTTGCAGATTTCAGGTTTCTTGCAGCATCCTTCTCTCCTTTGTTTTTCTTCTATCAACTGTTACATTATTTTCCGTTAGCTCCATTAATTTCAGCTTGGATAAAGGAGGGGATGTTAAGTTGACCGGAGACTCGAAATAGTCTAATGGAGGAAAATATATGTAGTTCATTCACATAGGGGACCTCAATTAAAAATTGTCTGAAAAAGTTTAAGCTAGTGTTTGACCAGAGATTTTGGGAGTAGCTATTAAAAAAATTATCTTTAAATATCTGACCGTGAAAATGTGATCTTCATATATTTTCTAGTTTTGGGACTTCCACTTATATACTTATAAAAATTCAAGTAATATGCATGTTCAAATATAACTTCAATTTTCAAAATCACAACTTCGAAAATTCAAATTTTCAAGTTTCAACTTCAAAAACAGGAGCTAAGGATTCATATAGCTGCCTGCAACTAATTACGGATTGAAGAGATTTTTTTATGATCTTCCTTACTGCATGCACTTACGGATAAAGTGAAGATTTTGGTGATATCATTGCTTCCAATTATTTTATGTCAAATAACTTTTGTGGAAATTCAATGTTCGAATTGTTTTGAGTGCTCATATAGGTTCTGCTATTCTGGGACTTCAAATATGTGATATCTGGCATAAGGTTTCTGAATTTGCTGTCTGCCTTTCGTAAGCTATGTTATTACTCCTTCGGTTTCAATTTGTTTGTATAGTATTGACTTGATATGAAGTTTAAGAAAGTATGGAAGACTTTTAAATTTTGTGGTCTTAAACTAAAGATATTAGAATGTACCAAAATGTTCTTTAATCTTGTGGTGTTAAATATGTCATTTGGAAAATTGGAATTAAAGAGTTGCCTAGAAGGAAGGAAGCATTGTTTTTTTAAACGAACTGAAAAAGGAAAGTAAGAGTCCATGCTTATGATTATTGTCCAGAAGTAGCTGTTGATGCAATTTTCCACTGCACTGCGCACAAAATTTAAGCATTGTTCTGGTCAAGACGTAAAAGACACTCATCTTACTCTGTTTCTTGAATTGTAACTTAGGATCCACACCATGATAAAATACTATCCTCATGATTAGACCGAGTCCCTTTAGATTTTATAAAGTACTCATTAGTGTCCCCATTCTCACCATTCAGCTTTGTTCTAAAAATTTGTTAAATATTTTTTCAATTACTATGCTATCGTGATTTTGATTGCTTAATCCAAGTAAAGTATTTTCTTTTTTTGTATGCTTATATAGGAAACTGAGGAGAACAGAAACTTTTTTCACTTGTATTTGTGTAAAAAGAACATGCTATTTGCATAGGTAGTTCGCAAATTTTTTGGGAAGCTCTGTGTTAAGAACTTATACTTCTTTAGCACCATCTTGTTATATAGAATTTTTATGACCTTTTGATTTATCATTTGAAGAAAAGGGTCTTATGTTAGAGTTAAATCATAAAAACAAAAGAAAAACCTAGCTGTTACAAATTTGATGAATTCCGGTGGTTCTCCCTCATCGCTGAAGACGTTATTTAATCATCGCTGCTGAAATCACCCTTTCAAATGTGTTGTTTCTTAGGAATATGGAGAGGCAGAAGAGGAGTTTGCTCGTGTTGATACCGCTAGACTAATCGCGAAATTTTTAACATCACGCAATCCAGCTCCTCTTCGTGTGCCTAAAGAGAAAGGATTTGGGGGTTCACCACATACTCCCATTACATTGCCATCTTGGTTGTCAGAAGAGGATGTCAACTACTAT</genome_strand>
        <mrna_strand>AGAACCAGCCATGGAGAATATACAGCACAAAAATCTCTCTGTAAACGGCATAAATATGCACGTAGCTGAAATTGGTGAAGGCCCATCAACAATACTATTCCTCCATGGTTTCCCTGAACTCTGGTATACATGGCGTCACCAACTGATTTCACTTTCATCCAAAGGTTACCGCGCAATAGCTCCAGATCTACGTGGCTATGGCGATACAGATTCTCCCCCTTCTCCTTCTAGCTATACCGTTTTTCATATTGTTGGTGACCTTATTGCCCTTCTAGATGCTCTGGGTCTCGATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCCTTGTTGGACATGATTGGGGTGCTGTTATAGCTTGGCATGTATGCCTTTTGCGACCTGATAGGATCAAAGCACTGGTTAATATGAGCGTTGTCTTCCACCCCAGGAACCCCAAGAGAAAGCCTATTGAATCTATGCGTGCTGTCCTCGGGGATGATTACTATATTTGCAGATTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATGGAGAGGCAGAAGAGGAGTTTGCTCGTGTTGATACCGCAAGACTAATCGCGAAATTTTTAACATCACGCAATCCAGCTCCCCTTCGTGTGCCTAAAGAGAAAGGATTTGGGGGTTCACCTCATACTCCCATTACATTGCCATCTTGGTTGTCAGAAGAGGATGTCAACTACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E614530" ref_strand="+" ref_description="SGN-E614530 [64318]">
      <seq>cagcacaaaaatctctctgtaaacggcataaatatgcacgtagctgaaattggtgaaggcccatcaacaatactattcctccatggtttccctgaactctggtatacatggcgtcaccaactgatttcactttcatccaaaggttaccgcgcaatagctccagatctacgtggctatggcgatacagattctcccccttctccttctagctataccgtttttcatattgttggtgaccttattgcccttctagatgctctgggtctcgatcaggtgttccttgttggacatgattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25350" stop="27509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25650" g_stop="25922" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25923" i_stop="27186" i_length="1264">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27187" g_stop="27210" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="297" r_length="24" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E614530" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>297</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E614530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25650" e_stop="25922"/>
          <exon e_start="27187" e_stop="27210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCACAAAAATCTCACTGTAAACGGCATAAATATGCACATAGCTGAAATTGGTGAAGGCCCATCAACAATACTATTCCTTCATGGTTTCCCTGAACTCTGGTATTCATGGCGTCACCAACTGATTTCACTTTCATCCAAAGGTTACCGCGCAATAGCACCAGATCTACGTGGTTATGGCGATACAGATTCTCCCCCTTCTCCTTCTAGCTATACCGTTTTTCATATTGTTGGTGACCTTATTGCCCTTCTAGATGCTCTGGGTCTCGATCAGGTTTGAGGCGAATCTAGAGTTTAAATTTCTAATATATTTGATAGTGAGTTTACGAAGTTAGTGATATGTATATTTGAGTAATTACAGGGAAATATAGGATTTAGTGAAAGTTAGTGTACTACTTAGTTCTCGTTAAGCAATAGAAACTTGAAGTTTGAGTTTTTGATGTTGTGATTTTTTGAACATGTATTTAAATGTAGTACACTTCATTCTACATGACGTCCTACATGTATCCTGTCACATGGAACATAGAACATGTATATGTATGTGTGTTCGTTCAATTTTATACAAGTTTAAGTGTTTACTCCTGTGATTCCAAAGTTGGAGGACATAGACATCACTTGAGACCAAGTTAAATGTCATATTTATGTACCATGTCTAAAAATAAGGTTCCCCTTTAGTAGAGTTCTGTATATCTAAGTGTATAGTATAGTTCGAGTAATTACAGGACGATCTAGGATTTACATACTGTGGTGCACAAGTCAACTAATTATATATGGAGGACACATCAATTAATGGATGTACTGTATGGATGATTTTGTATTTTTTGTTTTAACTTTTTTATGTAATAGGAAGTTAACCTTTTATAGTAGGTTAGCCAGCATTTTTTCTAGGTTATTAATTGATGTTTATTATTGCTTATCACTCTGAAAAAAAATGCTTATTCCATTTCTTTGATGAACACAAACTTTTTCACAGATTCTGCTTTCACATTTGCTTGAGCGTCAAATACCCTGGATATAATTCATCTTCAAATATGATTCTGTCTATTTGCCACCTAAAGTGAGTGTTTTGTGGCGTTGTAGAAATGATTGTACAGGAAGGAACTAGATACATTAGAGAGAGAAAAAAGATGATAATGATAAATTATTAAAGTTAGGGTATAAGCAGGGGCTTCTAGCGGGGTGGCTTTTCTAGATGTTCCAGATTTAAGCCTCCAACTCTATGTTATAGCCTTCAGGAGTCACATAGGCGCTCCTACCAAGTAGAATAGTTATGATATTTCCATCAAGATCAAAGTCTAAGAAGACATTATGTTGAACGATTCGCACCGACTTGACTGGCATGATAGATGGATTGGTAGTTTCTGTTATTTTCAGTTAGGACCTTGTCTCCTTTTTTATCTTCCACTCTCTTTGTAATTTGCCCGTAATTATGTTAATACTTGACCTGATTGTATAATGATTAGTGCATAGTTGGAGTTCCAAACAGTGGTTGCACATGCATTTTTTATATAAATATTTTATTTGCCTCTTTGAATTAGGTGTTCCTTGTTGGACATGATTGG</genome_strand>
        <mrna_strand>CAGCACAAAAATCTCTCTGTAAACGGCATAAATATGCACGTAGCTGAAATTGGTGAAGGCCCATCAACAATACTATTCCTCCATGGTTTCCCTGAACTCTGGTATACATGGCGTCACCAACTGATTTCACTTTCATCCAAAGGTTACCGCGCAATAGCTCCAGATCTACGTGGCTATGGCGATACAGATTCTCCCCCTTCTCCTTCTAGCTATACCGTTTTTCATATTGTTGGTGACCTTATTGCCCTTCTAGATGCTCTGGGTCTCGATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCCTTGTTGGACATGATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E620740" ref_strand="+" ref_description="SGN-E620740 [71444]">
      <seq>tagcaaaatctctctgtaaacggcataaatatgcacgtagctgaaattggtgaaggcccatcaacaatactattcctccatggtttccctgaactctggtatacatggcgtcaccaactgatttcactttcatccaaaggttaccgcgcaatagctccagatctacgtggctatggcgatacagattctcccccttctccttctagctataccgtttttcatattgttggtgaccttattgcccttctagatgctctgggtctcgatcaggtgttccttgttggacatgattggggtgctgttatagcttggcatgtatgccttttgcgacctgataggatcaaagcactggttaatatgagcgttgtcttccaccccaggaaccccaagagaaagcctattgaatctatgcgtgctgtcctcggggatgattactatatttgcagatttcaggaatatggagaggcagaagaggagttttctcgtgttgataccgcaagactaatcgcgaaatttttaacatcacgcaatccagctcctcttcgtgtgcctaaagagaaaggattgggggttcacctcatactcccattacattgccatcttggttgtcagcaagaggatgtcaactactatgccaacaagttccagacaagtccggtttcactgggtgggattaaactactatcgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25357" stop="29464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25653" g_stop="25922" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25923" i_stop="27186" i_length="1264">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27187" g_stop="27369" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="453" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27370" i_stop="28933" i_length="1564">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28934" g_stop="29165" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="689" r_length="236" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E620740" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E620740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25653" e_stop="25922"/>
          <exon e_start="27187" e_stop="27369"/>
          <exon e_start="28934" e_stop="29165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAAAATCTCACTGTAAACGGCATAAATATGCACATAGCTGAAATTGGTGAAGGCCCATCAACAATACTATTCCTTCATGGTTTCCCTGAACTCTGGTATTCATGGCGTCACCAACTGATTTCACTTTCATCCAAAGGTTACCGCGCAATAGCACCAGATCTACGTGGTTATGGCGATACAGATTCTCCCCCTTCTCCTTCTAGCTATACCGTTTTTCATATTGTTGGTGACCTTATTGCCCTTCTAGATGCTCTGGGTCTCGATCAGGTTTGAGGCGAATCTAGAGTTTAAATTTCTAATATATTTGATAGTGAGTTTACGAAGTTAGTGATATGTATATTTGAGTAATTACAGGGAAATATAGGATTTAGTGAAAGTTAGTGTACTACTTAGTTCTCGTTAAGCAATAGAAACTTGAAGTTTGAGTTTTTGATGTTGTGATTTTTTGAACATGTATTTAAATGTAGTACACTTCATTCTACATGACGTCCTACATGTATCCTGTCACATGGAACATAGAACATGTATATGTATGTGTGTTCGTTCAATTTTATACAAGTTTAAGTGTTTACTCCTGTGATTCCAAAGTTGGAGGACATAGACATCACTTGAGACCAAGTTAAATGTCATATTTATGTACCATGTCTAAAAATAAGGTTCCCCTTTAGTAGAGTTCTGTATATCTAAGTGTATAGTATAGTTCGAGTAATTACAGGACGATCTAGGATTTACATACTGTGGTGCACAAGTCAACTAATTATATATGGAGGACACATCAATTAATGGATGTACTGTATGGATGATTTTGTATTTTTTGTTTTAACTTTTTTATGTAATAGGAAGTTAACCTTTTATAGTAGGTTAGCCAGCATTTTTTCTAGGTTATTAATTGATGTTTATTATTGCTTATCACTCTGAAAAAAAATGCTTATTCCATTTCTTTGATGAACACAAACTTTTTCACAGATTCTGCTTTCACATTTGCTTGAGCGTCAAATACCCTGGATATAATTCATCTTCAAATATGATTCTGTCTATTTGCCACCTAAAGTGAGTGTTTTGTGGCGTTGTAGAAATGATTGTACAGGAAGGAACTAGATACATTAGAGAGAGAAAAAAGATGATAATGATAAATTATTAAAGTTAGGGTATAAGCAGGGGCTTCTAGCGGGGTGGCTTTTCTAGATGTTCCAGATTTAAGCCTCCAACTCTATGTTATAGCCTTCAGGAGTCACATAGGCGCTCCTACCAAGTAGAATAGTTATGATATTTCCATCAAGATCAAAGTCTAAGAAGACATTATGTTGAACGATTCGCACCGACTTGACTGGCATGATAGATGGATTGGTAGTTTCTGTTATTTTCAGTTAGGACCTTGTCTCCTTTTTTATCTTCCACTCTCTTTGTAATTTGCCCGTAATTATGTTAATACTTGACCTGATTGTATAATGATTAGTGCATAGTTGGAGTTCCAAACAGTGGTTGCACATGCATTTTTTATATAAATATTTTATTTGCCTCTTTGAATTAGGTGTTCCTTGTTGGACATGATTGGGGTGCTGTTATAGCTTGGCATGTATGCCTTTTGCGACCTGATAGGATCAAAGCACTGGTTAATATGAGCGTTGTCTTCCACCCCAGGAACCCCAAGAGAAAGCCTATTGAATCTATGCGTGCTGTCCTCGGGGATGATTACTATATTTGCAGATTTCAGGTTTCTTGCAGCATCCTTCTCTCCTTTGTTTTTCTTCTATCAACTGTTACATTATTTTCCGTTAGCTCCATTAATTTCAGCTTGGATAAAGGAGGGGATGTTAAGTTGACCGGAGACTCGAAATAGTCTAATGGAGGAAAATATATGTAGTTCATTCACATAGGGGACCTCAATTAAAAATTGTCTGAAAAAGTTTAAGCTAGTGTTTGACCAGAGATTTTGGGAGTAGCTATTAAAAAAATTATCTTTAAATATCTGACCGTGAAAATGTGATCTTCATATATTTTCTAGTTTTGGGACTTCCACTTATATACTTATAAAAATTCAAGTAATATGCATGTTCAAATATAACTTCAATTTTCAAAATCACAACTTCGAAAATTCAAATTTTCAAGTTTCAACTTCAAAAACAGGAGCTAAGGATTCATATAGCTGCCTGCAACTAATTACGGATTGAAGAGATTTTTTTATGATCTTCCTTACTGCATGCACTTACGGATAAAGTGAAGATTTTGGTGATATCATTGCTTCCAATTATTTTATGTCAAATAACTTTTGTGGAAATTCAATGTTCGAATTGTTTTGAGTGCTCATATAGGTTCTGCTATTCTGGGACTTCAAATATGTGATATCTGGCATAAGGTTTCTGAATTTGCTGTCTGCCTTTCGTAAGCTATGTTATTACTCCTTCGGTTTCAATTTGTTTGTATAGTATTGACTTGATATGAAGTTTAAGAAAGTATGGAAGACTTTTAAATTTTGTGGTCTTAAACTAAAGATATTAGAATGTACCAAAATGTTCTTTAATCTTGTGGTGTTAAATATGTCATTTGGAAAATTGGAATTAAAGAGTTGCCTAGAAGGAAGGAAGCATTGTTTTTTTAAACGAACTGAAAAAGGAAAGTAAGAGTCCATGCTTATGATTATTGTCCAGAAGTAGCTGTTGATGCAATTTTCCACTGCACTGCGCACAAAATTTAAGCATTGTTCTGGTCAAGACGTAAAAGACACTCATCTTACTCTGTTTCTTGAATTGTAACTTAGGATCCACACCATGATAAAATACTATCCTCATGATTAGACCGAGTCCCTTTAGATTTTATAAAGTACTCATTAGTGTCCCCATTCTCACCATTCAGCTTTGTTCTAAAAATTTGTTAAATATTTTTTCAATTACTATGCTATCGTGATTTTGATTGCTTAATCCAAGTAAAGTATTTTCTTTTTTTGTATGCTTATATAGGAAACTGAGGAGAACAGAAACTTTTTTCACTTGTATTTGTGTAAAAAGAACATGCTATTTGCATAGGTAGTTCGCAAATTTTTTGGGAAGCTCTGTGTTAAGAACTTATACTTCTTTAGCACCATCTTGTTATATAGAATTTTTATGACCTTTTGATTTATCATTTGAAGAAAAGGGTCTTATGTTAGAGTTAAATCATAAAAACAAAAGAAAAACCTAGCTGTTACAAATTTGATGAATTCCGGTGGTTCTCCCTCATCGCTGAAGACGTTATTTAATCATCGCTGCTGAAATCACCCTTTCAAATGTGTTGTTTCTTAGGAATATGGAGAGGCAGAAGAGGAGTTTGCTCGTGTTGATACCGCTAGACTAATCGCGAAATTTTTAACATCACGCAATCCAGCTCCTCTTCGTGTGCCTAAAGAGAAAGGATTTGGGGGTTCACCACATACTCCCATTACATTGCCATCTTGGTTGTCAG-AAGAGGATGTCAACTACTATGCCAACAAGTT-CAGAC-AGTCAGGTTTTACT-GGT-GGATTAAACTACTATCGAG</genome_strand>
        <mrna_strand>TAGCAAAATCTCTCTGTAAACGGCATAAATATGCACGTAGCTGAAATTGGTGAAGGCCCATCAACAATACTATTCCTCCATGGTTTCCCTGAACTCTGGTATACATGGCGTCACCAACTGATTTCACTTTCATCCAAAGGTTACCGCGCAATAGCTCCAGATCTACGTGGCTATGGCGATACAGATTCTCCCCCTTCTCCTTCTAGCTATACCGTTTTTCATATTGTTGGTGACCTTATTGCCCTTCTAGATGCTCTGGGTCTCGATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCCTTGTTGGACATGATTGGGGTGCTGTTATAGCTTGGCATGTATGCCTTTTGCGACCTGATAGGATCAAAGCACTGGTTAATATGAGCGTTGTCTTCCACCCCAGGAACCCCAAGAGAAAGCCTATTGAATCTATGCGTGCTGTCCTCGGGGATGATTACTATATTTGCAGATTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATGGAGAGGCAGAAGAGGAGTTTTCTCGTGTTGATACCGCAAGACTAATCGCGAAATTTTTAACATCACGCAATCCAGCTCCTCTTCGTGTGCCTAAAGAGAAAGGA-TTGGGGGTTCACCTCATACTCCCATTACATTGCCATCTTGGTTGTCAGCAAGAGGATGTCAACTACTATGCCAACAAGTTCCAGACAAGTCCGGTTTCACTGGGTGGGATTAAACTACTATCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307450" ref_strand="+" ref_description="SGN-E307450 [cLEY-12-L19]">
      <seq>aaaaatctcactgtaaacggcataaatatgcacatagctgaaattggtgaaggcccatcaacaatactattccttcatggtttccctgaactctggtattcatggcgtcaccaactgatttcactttcatccaaaggttaccgcgcaatagcaccagatctacgtggttatggcgatacagattctcccccttctccttctagctataccgtttttcatattgttggtgaccttattgcccttctagatgctctgggtctcgatcaggtgttccttgttggacatgattggggtgctgttatagcttggcatgtatgccttttgcgacctgataggatcaaagcactggttaatatgagcgttgtcttccaccccaggaaccccaagagaaagcctattgaatctatgcgtgctgtcctcggggatgattactatatttgcagatttcaggaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25356" stop="27675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25656" g_stop="25922" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25923" i_stop="27186" i_length="1264">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27187" g_stop="27369" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="450" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E307450" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25656" e_stop="25922"/>
          <exon e_start="27187" e_stop="27369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATCTCACTGTAAACGGCATAAATATGCACATAGCTGAAATTGGTGAAGGCCCATCAACAATACTATTCCTTCATGGTTTCCCTGAACTCTGGTATTCATGGCGTCACCAACTGATTTCACTTTCATCCAAAGGTTACCGCGCAATAGCACCAGATCTACGTGGTTATGGCGATACAGATTCTCCCCCTTCTCCTTCTAGCTATACCGTTTTTCATATTGTTGGTGACCTTATTGCCCTTCTAGATGCTCTGGGTCTCGATCAGGTTTGAGGCGAATCTAGAGTTTAAATTTCTAATATATTTGATAGTGAGTTTACGAAGTTAGTGATATGTATATTTGAGTAATTACAGGGAAATATAGGATTTAGTGAAAGTTAGTGTACTACTTAGTTCTCGTTAAGCAATAGAAACTTGAAGTTTGAGTTTTTGATGTTGTGATTTTTTGAACATGTATTTAAATGTAGTACACTTCATTCTACATGACGTCCTACATGTATCCTGTCACATGGAACATAGAACATGTATATGTATGTGTGTTCGTTCAATTTTATACAAGTTTAAGTGTTTACTCCTGTGATTCCAAAGTTGGAGGACATAGACATCACTTGAGACCAAGTTAAATGTCATATTTATGTACCATGTCTAAAAATAAGGTTCCCCTTTAGTAGAGTTCTGTATATCTAAGTGTATAGTATAGTTCGAGTAATTACAGGACGATCTAGGATTTACATACTGTGGTGCACAAGTCAACTAATTATATATGGAGGACACATCAATTAATGGATGTACTGTATGGATGATTTTGTATTTTTTGTTTTAACTTTTTTATGTAATAGGAAGTTAACCTTTTATAGTAGGTTAGCCAGCATTTTTTCTAGGTTATTAATTGATGTTTATTATTGCTTATCACTCTGAAAAAAAATGCTTATTCCATTTCTTTGATGAACACAAACTTTTTCACAGATTCTGCTTTCACATTTGCTTGAGCGTCAAATACCCTGGATATAATTCATCTTCAAATATGATTCTGTCTATTTGCCACCTAAAGTGAGTGTTTTGTGGCGTTGTAGAAATGATTGTACAGGAAGGAACTAGATACATTAGAGAGAGAAAAAAGATGATAATGATAAATTATTAAAGTTAGGGTATAAGCAGGGGCTTCTAGCGGGGTGGCTTTTCTAGATGTTCCAGATTTAAGCCTCCAACTCTATGTTATAGCCTTCAGGAGTCACATAGGCGCTCCTACCAAGTAGAATAGTTATGATATTTCCATCAAGATCAAAGTCTAAGAAGACATTATGTTGAACGATTCGCACCGACTTGACTGGCATGATAGATGGATTGGTAGTTTCTGTTATTTTCAGTTAGGACCTTGTCTCCTTTTTTATCTTCCACTCTCTTTGTAATTTGCCCGTAATTATGTTAATACTTGACCTGATTGTATAATGATTAGTGCATAGTTGGAGTTCCAAACAGTGGTTGCACATGCATTTTTTATATAAATATTTTATTTGCCTCTTTGAATTAGGTGTTCCTTGTTGGACATGATTGGGGTGCTGTTATAGCTTGGCATGTATGCCTTTTGCGACCTGATAGGATCAAAGCACTGGTTAATATGAGCGTTGTCTTCCACCCCAGGAACCCCAAGAGAAAGCCTATTGAATCTATGCGTGCTGTCCTCGGGGATGATTACTATATTTGCAGATTTCAG</genome_strand>
        <mrna_strand>AAAAATCTCACTGTAAACGGCATAAATATGCACATAGCTGAAATTGGTGAAGGCCCATCAACAATACTATTCCTTCATGGTTTCCCTGAACTCTGGTATTCATGGCGTCACCAACTGATTTCACTTTCATCCAAAGGTTACCGCGCAATAGCACCAGATCTACGTGGTTATGGCGATACAGATTCTCCCCCTTCTCCTTCTAGCTATACCGTTTTTCATATTGTTGGTGACCTTATTGCCCTTCTAGATGCTCTGGGTCTCGATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCCTTGTTGGACATGATTGGGGTGCTGTTATAGCTTGGCATGTATGCCTTTTGCGACCTGATAGGATCAAAGCACTGGTTAATATGAGCGTTGTCTTCCACCCCAGGAACCCCAAGAGAAAGCCTATTGAATCTATGCGTGCTGTCCTCGGGGATGATTACTATATTTGCAGATTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E615752" ref_strand="+" ref_description="SGN-E615752 [65554]">
      <seq>gtatacatggcgtcacaactgatttcactttcatccaaaggttaccgcgcaatagctccagatctacgtggctatggcgatacagattctcccccttctccttctagctatactgtttttcatattgttggtgaccttattgcccttctagatgctctgggtctcgatcaggtgttccttgttggacatgattggggtgctgttatagcttggcatgtatgccttttgcgacctgataggatcaaagcactggttaatatgagtgttgtcttccaccccaggaaccccaagagaaagcctattgaatctatgcgtgctgtccttggggatgattactatatttgcagatttcaggaatatggagaggcagaagaggagtttgctcgtgttgataccgcaaaacttatcgcgaaattcttaacatcacgcaatccagctcctcttcgtgtgcctaaagagaaaggatttgggggttcacctcatactcccattacattgccatcttggttgtcagaagaggatatcaactactatgccaacaagttcagacagtcaggttttaccggtggattaaactactatcgagctatggacctaaactgggagctgaccgcaccatggaccggtgtacaaataaaggtccccgttaagttcatcataggggatgtggacctaacttacaatacacctggtgttaaaggaatatatccacaaaggtggggttccaaaaaaatggtgccattcttgcaagaagtagttatcatggaaggagttgcacacttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25451" stop="30292"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25751" g_stop="25922" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25923" i_stop="27186" i_length="1264">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27187" g_stop="27369" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="354" r_length="183" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27370" i_stop="28933" i_length="1564">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28934" g_stop="29175" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="596" r_length="242" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29176" i_stop="29806" i_length="631">
            <donor d_prob="0.924" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29807" g_stop="29992" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="785" r_length="189" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E615752" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E615752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25751" e_stop="25922"/>
          <exon e_start="27187" e_stop="27369"/>
          <exon e_start="28934" e_stop="29175"/>
          <exon e_start="29807" e_stop="29992"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTCATGGCGTCACCAACTGATTTCACTTTCATCCAAAGGTTACCGCGCAATAGCACCAGATCTACGTGGTTATGGCGATACAGATTCTCCCCCTTCTCCTTCTAGCTATACCGTTTTTCATATTGTTGGTGACCTTATTGCCCTTCTAGATGCTCTGGGTCTCGATCAGGTTTGAGGCGAATCTAGAGTTTAAATTTCTAATATATTTGATAGTGAGTTTACGAAGTTAGTGATATGTATATTTGAGTAATTACAGGGAAATATAGGATTTAGTGAAAGTTAGTGTACTACTTAGTTCTCGTTAAGCAATAGAAACTTGAAGTTTGAGTTTTTGATGTTGTGATTTTTTGAACATGTATTTAAATGTAGTACACTTCATTCTACATGACGTCCTACATGTATCCTGTCACATGGAACATAGAACATGTATATGTATGTGTGTTCGTTCAATTTTATACAAGTTTAAGTGTTTACTCCTGTGATTCCAAAGTTGGAGGACATAGACATCACTTGAGACCAAGTTAAATGTCATATTTATGTACCATGTCTAAAAATAAGGTTCCCCTTTAGTAGAGTTCTGTATATCTAAGTGTATAGTATAGTTCGAGTAATTACAGGACGATCTAGGATTTACATACTGTGGTGCACAAGTCAACTAATTATATATGGAGGACACATCAATTAATGGATGTACTGTATGGATGATTTTGTATTTTTTGTTTTAACTTTTTTATGTAATAGGAAGTTAACCTTTTATAGTAGGTTAGCCAGCATTTTTTCTAGGTTATTAATTGATGTTTATTATTGCTTATCACTCTGAAAAAAAATGCTTATTCCATTTCTTTGATGAACACAAACTTTTTCACAGATTCTGCTTTCACATTTGCTTGAGCGTCAAATACCCTGGATATAATTCATCTTCAAATATGATTCTGTCTATTTGCCACCTAAAGTGAGTGTTTTGTGGCGTTGTAGAAATGATTGTACAGGAAGGAACTAGATACATTAGAGAGAGAAAAAAGATGATAATGATAAATTATTAAAGTTAGGGTATAAGCAGGGGCTTCTAGCGGGGTGGCTTTTCTAGATGTTCCAGATTTAAGCCTCCAACTCTATGTTATAGCCTTCAGGAGTCACATAGGCGCTCCTACCAAGTAGAATAGTTATGATATTTCCATCAAGATCAAAGTCTAAGAAGACATTATGTTGAACGATTCGCACCGACTTGACTGGCATGATAGATGGATTGGTAGTTTCTGTTATTTTCAGTTAGGACCTTGTCTCCTTTTTTATCTTCCACTCTCTTTGTAATTTGCCCGTAATTATGTTAATACTTGACCTGATTGTATAATGATTAGTGCATAGTTGGAGTTCCAAACAGTGGTTGCACATGCATTTTTTATATAAATATTTTATTTGCCTCTTTGAATTAGGTGTTCCTTGTTGGACATGATTGGGGTGCTGTTATAGCTTGGCATGTATGCCTTTTGCGACCTGATAGGATCAAAGCACTGGTTAATATGAGCGTTGTCTTCCACCCCAGGAACCCCAAGAGAAAGCCTATTGAATCTATGCGTGCTGTCCTCGGGGATGATTACTATATTTGCAGATTTCAGGTTTCTTGCAGCATCCTTCTCTCCTTTGTTTTTCTTCTATCAACTGTTACATTATTTTCCGTTAGCTCCATTAATTTCAGCTTGGATAAAGGAGGGGATGTTAAGTTGACCGGAGACTCGAAATAGTCTAATGGAGGAAAATATATGTAGTTCATTCACATAGGGGACCTCAATTAAAAATTGTCTGAAAAAGTTTAAGCTAGTGTTTGACCAGAGATTTTGGGAGTAGCTATTAAAAAAATTATCTTTAAATATCTGACCGTGAAAATGTGATCTTCATATATTTTCTAGTTTTGGGACTTCCACTTATATACTTATAAAAATTCAAGTAATATGCATGTTCAAATATAACTTCAATTTTCAAAATCACAACTTCGAAAATTCAAATTTTCAAGTTTCAACTTCAAAAACAGGAGCTAAGGATTCATATAGCTGCCTGCAACTAATTACGGATTGAAGAGATTTTTTTATGATCTTCCTTACTGCATGCACTTACGGATAAAGTGAAGATTTTGGTGATATCATTGCTTCCAATTATTTTATGTCAAATAACTTTTGTGGAAATTCAATGTTCGAATTGTTTTGAGTGCTCATATAGGTTCTGCTATTCTGGGACTTCAAATATGTGATATCTGGCATAAGGTTTCTGAATTTGCTGTCTGCCTTTCGTAAGCTATGTTATTACTCCTTCGGTTTCAATTTGTTTGTATAGTATTGACTTGATATGAAGTTTAAGAAAGTATGGAAGACTTTTAAATTTTGTGGTCTTAAACTAAAGATATTAGAATGTACCAAAATGTTCTTTAATCTTGTGGTGTTAAATATGTCATTTGGAAAATTGGAATTAAAGAGTTGCCTAGAAGGAAGGAAGCATTGTTTTTTTAAACGAACTGAAAAAGGAAAGTAAGAGTCCATGCTTATGATTATTGTCCAGAAGTAGCTGTTGATGCAATTTTCCACTGCACTGCGCACAAAATTTAAGCATTGTTCTGGTCAAGACGTAAAAGACACTCATCTTACTCTGTTTCTTGAATTGTAACTTAGGATCCACACCATGATAAAATACTATCCTCATGATTAGACCGAGTCCCTTTAGATTTTATAAAGTACTCATTAGTGTCCCCATTCTCACCATTCAGCTTTGTTCTAAAAATTTGTTAAATATTTTTTCAATTACTATGCTATCGTGATTTTGATTGCTTAATCCAAGTAAAGTATTTTCTTTTTTTGTATGCTTATATAGGAAACTGAGGAGAACAGAAACTTTTTTCACTTGTATTTGTGTAAAAAGAACATGCTATTTGCATAGGTAGTTCGCAAATTTTTTGGGAAGCTCTGTGTTAAGAACTTATACTTCTTTAGCACCATCTTGTTATATAGAATTTTTATGACCTTTTGATTTATCATTTGAAGAAAAGGGTCTTATGTTAGAGTTAAATCATAAAAACAAAAGAAAAACCTAGCTGTTACAAATTTGATGAATTCCGGTGGTTCTCCCTCATCGCTGAAGACGTTATTTAATCATCGCTGCTGAAATCACCCTTTCAAATGTGTTGTTTCTTAGGAATATGGAGAGGCAGAAGAGGAGTTTGCTCGTGTTGATACCGCTAGACTAATCGCGAAATTTTTAACATCACGCAATCCAGCTCCTCTTCGTGTGCCTAAAGAGAAAGGATTTGGGGGTTCACCACATACTCCCATTACATTGCCATCTTGGTTGTCAGAAGAGGATGTCAACTACTATGCCAACAAGTTCAGACAGTCAGGTTTTACTGGTGGATTAAACTACTATCGAGCTATGGACCTGTGAGTTGCCTAATCATTTTTTTAACCAAATGACCTATTTGTTCAAGAACTCTTAATTTTATTTTTTGCTCAAATTTTTTGTGGTATTGTTTCTAAATGAGAACTATGAATGGTTCGGGGTAAAATTTATTAACTGAGAACTAATCCTCGTCGTCTTGGTAAATAACTCAACATTTAACCAAGTGCAACATTTAACCTTTTTGTAGCATGAGTGTTAACAAACAATAGCAGACAATATTATGCTGATTTTAGAATATATATACATTAAATACCTAGTTTTATGAAGAGATCACGGGTTCACAGGCCCCATATTTTCGCCTATAAATTCACCCGGGATATCATGGATCAACCTAATAGTTTTATGTTCTGATACCTGCTTATAAGCAAATGTTACTTTACGAAGCTGATGCAACCTAATATACTCACTTCAACTGAACCCGGTATCTTCAACATGCAACATAGAGATACATGTGTATAAGAGACTAACCAACCTCATATTTATCATAGGATTGTTATCTTTTATCCCATCAAACAAACAACCCCGTAAGTCTTTTATGTATACAATTATATACAATGCATGATAGCTGTTTGTGTGGCCATTTTATTATTGTTTTATTTTTAAATGTTTCAGAAACTGGGAGCTGACCGCGCCATGGACCGGTGTACAAATTAAGGTCCCTGTTAAGTTCATCGTAGGGGATGTGGACCTAACTTACAATACACCTGGTGTT-AAGGAATATATCCACAAAGGT-GGTTTCC-AAAAAGTGGTGCCATTCTTGCAAGAAGTAGTTATCATGGAAGGAGTTGCACACTTCAT</genome_strand>
        <mrna_strand>GTATACATGGCGTCA-CAACTGATTTCACTTTCATCCAAAGGTTACCGCGCAATAGCTCCAGATCTACGTGGCTATGGCGATACAGATTCTCCCCCTTCTCCTTCTAGCTATACTGTTTTTCATATTGTTGGTGACCTTATTGCCCTTCTAGATGCTCTGGGTCTCGATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCCTTGTTGGACATGATTGGGGTGCTGTTATAGCTTGGCATGTATGCCTTTTGCGACCTGATAGGATCAAAGCACTGGTTAATATGAGTGTTGTCTTCCACCCCAGGAACCCCAAGAGAAAGCCTATTGAATCTATGCGTGCTGTCCTTGGGGATGATTACTATATTTGCAGATTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATGGAGAGGCAGAAGAGGAGTTTGCTCGTGTTGATACCGCAAAACTTATCGCGAAATTCTTAACATCACGCAATCCAGCTCCTCTTCGTGTGCCTAAAGAGAAAGGATTTGGGGGTTCACCTCATACTCCCATTACATTGCCATCTTGGTTGTCAGAAGAGGATATCAACTACTATGCCAACAAGTTCAGACAGTCAGGTTTTACCGGTGGATTAAACTACTATCGAGCTATGGACCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTGGGAGCTGACCGCACCATGGACCGGTGTACAAATAAAGGTCCCCGTTAAGTTCATCATAGGGGATGTGGACCTAACTTACAATACACCTGGTGTTAAAGGAATATATCCACAAAGGTGGGGTTCCAAAAAAATGGTGCCATTCTTGCAAGAAGTAGTTATCATGGAAGGAGTTGCACACTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585544" ref_strand="+" ref_description="SGN-E585544 [68005]">
      <seq>cagattctcccccttctccttctagctataccgtttttcatattgttggtgaccttattgcccttctagatgctctgggtctcgatcaggtgttccttgttggacatgattggggtgctgttatagcttggcatgtatgccttttgcgacctgataggatcaaagcactggttaatatgagcgttgtcttccaccccaggaaccccaagagaaagcctattgaatctatgcgtgctgtcctcggggatgattactatatttgcagatttcaggaatatggagaggcagaagaggagttttctcgtgttgataccgcaagactaatcgcgaaatttttaacatcacgcaatccagctcctcttcgtgtgcctaaagagaaaggatttgggggttcacctcatactcccattacattgccatcttggttgtcagaagaggatgtcaactactatgccaacaagttcagacagtcaggtttcactggtggattaaactactatcgagctatggacctaaactgggagctgaccgcgccatggaccggtgtacaaataaaggtccccgttaagttcatcataggggatgtggacctaacttacaatacacctggtgttaaggaatatatccacaaaggtgggttccaaaaaatggtgccattcttgcaagaagtagttatcatggaaggagttgcacacttcatcaaccaagaaagaccagaagaacattaatgaccacatatatgacttttttcacaagttctaaggtgtgtctattttaatcatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25534" stop="30373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25834" g_stop="25922" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25923" i_stop="27186" i_length="1264">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27187" g_stop="27369" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="272" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27370" i_stop="28933" i_length="1564">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28934" g_stop="29175" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="514" r_length="242" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29176" i_stop="29806" i_length="631">
            <donor d_prob="0.924" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29807" g_stop="30077" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="785" r_length="271" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E585544" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E585544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25834" e_stop="25922"/>
          <exon e_start="27187" e_stop="27369"/>
          <exon e_start="28934" e_stop="29175"/>
          <exon e_start="29807" e_stop="30077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATTCTCCCCCTTCTCCTTCTAGCTATACCGTTTTTCATATTGTTGGTGACCTTATTGCCCTTCTAGATGCTCTGGGTCTCGATCAGGTTTGAGGCGAATCTAGAGTTTAAATTTCTAATATATTTGATAGTGAGTTTACGAAGTTAGTGATATGTATATTTGAGTAATTACAGGGAAATATAGGATTTAGTGAAAGTTAGTGTACTACTTAGTTCTCGTTAAGCAATAGAAACTTGAAGTTTGAGTTTTTGATGTTGTGATTTTTTGAACATGTATTTAAATGTAGTACACTTCATTCTACATGACGTCCTACATGTATCCTGTCACATGGAACATAGAACATGTATATGTATGTGTGTTCGTTCAATTTTATACAAGTTTAAGTGTTTACTCCTGTGATTCCAAAGTTGGAGGACATAGACATCACTTGAGACCAAGTTAAATGTCATATTTATGTACCATGTCTAAAAATAAGGTTCCCCTTTAGTAGAGTTCTGTATATCTAAGTGTATAGTATAGTTCGAGTAATTACAGGACGATCTAGGATTTACATACTGTGGTGCACAAGTCAACTAATTATATATGGAGGACACATCAATTAATGGATGTACTGTATGGATGATTTTGTATTTTTTGTTTTAACTTTTTTATGTAATAGGAAGTTAACCTTTTATAGTAGGTTAGCCAGCATTTTTTCTAGGTTATTAATTGATGTTTATTATTGCTTATCACTCTGAAAAAAAATGCTTATTCCATTTCTTTGATGAACACAAACTTTTTCACAGATTCTGCTTTCACATTTGCTTGAGCGTCAAATACCCTGGATATAATTCATCTTCAAATATGATTCTGTCTATTTGCCACCTAAAGTGAGTGTTTTGTGGCGTTGTAGAAATGATTGTACAGGAAGGAACTAGATACATTAGAGAGAGAAAAAAGATGATAATGATAAATTATTAAAGTTAGGGTATAAGCAGGGGCTTCTAGCGGGGTGGCTTTTCTAGATGTTCCAGATTTAAGCCTCCAACTCTATGTTATAGCCTTCAGGAGTCACATAGGCGCTCCTACCAAGTAGAATAGTTATGATATTTCCATCAAGATCAAAGTCTAAGAAGACATTATGTTGAACGATTCGCACCGACTTGACTGGCATGATAGATGGATTGGTAGTTTCTGTTATTTTCAGTTAGGACCTTGTCTCCTTTTTTATCTTCCACTCTCTTTGTAATTTGCCCGTAATTATGTTAATACTTGACCTGATTGTATAATGATTAGTGCATAGTTGGAGTTCCAAACAGTGGTTGCACATGCATTTTTTATATAAATATTTTATTTGCCTCTTTGAATTAGGTGTTCCTTGTTGGACATGATTGGGGTGCTGTTATAGCTTGGCATGTATGCCTTTTGCGACCTGATAGGATCAAAGCACTGGTTAATATGAGCGTTGTCTTCCACCCCAGGAACCCCAAGAGAAAGCCTATTGAATCTATGCGTGCTGTCCTCGGGGATGATTACTATATTTGCAGATTTCAGGTTTCTTGCAGCATCCTTCTCTCCTTTGTTTTTCTTCTATCAACTGTTACATTATTTTCCGTTAGCTCCATTAATTTCAGCTTGGATAAAGGAGGGGATGTTAAGTTGACCGGAGACTCGAAATAGTCTAATGGAGGAAAATATATGTAGTTCATTCACATAGGGGACCTCAATTAAAAATTGTCTGAAAAAGTTTAAGCTAGTGTTTGACCAGAGATTTTGGGAGTAGCTATTAAAAAAATTATCTTTAAATATCTGACCGTGAAAATGTGATCTTCATATATTTTCTAGTTTTGGGACTTCCACTTATATACTTATAAAAATTCAAGTAATATGCATGTTCAAATATAACTTCAATTTTCAAAATCACAACTTCGAAAATTCAAATTTTCAAGTTTCAACTTCAAAAACAGGAGCTAAGGATTCATATAGCTGCCTGCAACTAATTACGGATTGAAGAGATTTTTTTATGATCTTCCTTACTGCATGCACTTACGGATAAAGTGAAGATTTTGGTGATATCATTGCTTCCAATTATTTTATGTCAAATAACTTTTGTGGAAATTCAATGTTCGAATTGTTTTGAGTGCTCATATAGGTTCTGCTATTCTGGGACTTCAAATATGTGATATCTGGCATAAGGTTTCTGAATTTGCTGTCTGCCTTTCGTAAGCTATGTTATTACTCCTTCGGTTTCAATTTGTTTGTATAGTATTGACTTGATATGAAGTTTAAGAAAGTATGGAAGACTTTTAAATTTTGTGGTCTTAAACTAAAGATATTAGAATGTACCAAAATGTTCTTTAATCTTGTGGTGTTAAATATGTCATTTGGAAAATTGGAATTAAAGAGTTGCCTAGAAGGAAGGAAGCATTGTTTTTTTAAACGAACTGAAAAAGGAAAGTAAGAGTCCATGCTTATGATTATTGTCCAGAAGTAGCTGTTGATGCAATTTTCCACTGCACTGCGCACAAAATTTAAGCATTGTTCTGGTCAAGACGTAAAAGACACTCATCTTACTCTGTTTCTTGAATTGTAACTTAGGATCCACACCATGATAAAATACTATCCTCATGATTAGACCGAGTCCCTTTAGATTTTATAAAGTACTCATTAGTGTCCCCATTCTCACCATTCAGCTTTGTTCTAAAAATTTGTTAAATATTTTTTCAATTACTATGCTATCGTGATTTTGATTGCTTAATCCAAGTAAAGTATTTTCTTTTTTTGTATGCTTATATAGGAAACTGAGGAGAACAGAAACTTTTTTCACTTGTATTTGTGTAAAAAGAACATGCTATTTGCATAGGTAGTTCGCAAATTTTTTGGGAAGCTCTGTGTTAAGAACTTATACTTCTTTAGCACCATCTTGTTATATAGAATTTTTATGACCTTTTGATTTATCATTTGAAGAAAAGGGTCTTATGTTAGAGTTAAATCATAAAAACAAAAGAAAAACCTAGCTGTTACAAATTTGATGAATTCCGGTGGTTCTCCCTCATCGCTGAAGACGTTATTTAATCATCGCTGCTGAAATCACCCTTTCAAATGTGTTGTTTCTTAGGAATATGGAGAGGCAGAAGAGGAGTTTGCTCGTGTTGATACCGCTAGACTAATCGCGAAATTTTTAACATCACGCAATCCAGCTCCTCTTCGTGTGCCTAAAGAGAAAGGATTTGGGGGTTCACCACATACTCCCATTACATTGCCATCTTGGTTGTCAGAAGAGGATGTCAACTACTATGCCAACAAGTTCAGACAGTCAGGTTTTACTGGTGGATTAAACTACTATCGAGCTATGGACCTGTGAGTTGCCTAATCATTTTTTTAACCAAATGACCTATTTGTTCAAGAACTCTTAATTTTATTTTTTGCTCAAATTTTTTGTGGTATTGTTTCTAAATGAGAACTATGAATGGTTCGGGGTAAAATTTATTAACTGAGAACTAATCCTCGTCGTCTTGGTAAATAACTCAACATTTAACCAAGTGCAACATTTAACCTTTTTGTAGCATGAGTGTTAACAAACAATAGCAGACAATATTATGCTGATTTTAGAATATATATACATTAAATACCTAGTTTTATGAAGAGATCACGGGTTCACAGGCCCCATATTTTCGCCTATAAATTCACCCGGGATATCATGGATCAACCTAATAGTTTTATGTTCTGATACCTGCTTATAAGCAAATGTTACTTTACGAAGCTGATGCAACCTAATATACTCACTTCAACTGAACCCGGTATCTTCAACATGCAACATAGAGATACATGTGTATAAGAGACTAACCAACCTCATATTTATCATAGGATTGTTATCTTTTATCCCATCAAACAAACAACCCCGTAAGTCTTTTATGTATACAATTATATACAATGCATGATAGCTGTTTGTGTGGCCATTTTATTATTGTTTTATTTTTAAATGTTTCAGAAACTGGGAGCTGACCGCGCCATGGACCGGTGTACAAATTAAGGTCCCTGTTAAGTTCATCGTAGGGGATGTGGACCTAACTTACAATACACCTGGTGTTAAGGAATATATCCACAAAGGTGGTTTCCAAAAAGTGGTGCCATTCTTGCAAGAAGTAGTTATCATGGAAGGAGTTGCACACTTCATCAACCAAGAAAGACCAGAAGAA-ATTAATGACCACATATATGACTTTTTTCAAAAGTTCTAAGGTGTCTGTAATTTTAACTTTTTA</genome_strand>
        <mrna_strand>CAGATTCTCCCCCTTCTCCTTCTAGCTATACCGTTTTTCATATTGTTGGTGACCTTATTGCCCTTCTAGATGCTCTGGGTCTCGATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCCTTGTTGGACATGATTGGGGTGCTGTTATAGCTTGGCATGTATGCCTTTTGCGACCTGATAGGATCAAAGCACTGGTTAATATGAGCGTTGTCTTCCACCCCAGGAACCCCAAGAGAAAGCCTATTGAATCTATGCGTGCTGTCCTCGGGGATGATTACTATATTTGCAGATTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATGGAGAGGCAGAAGAGGAGTTTTCTCGTGTTGATACCGCAAGACTAATCGCGAAATTTTTAACATCACGCAATCCAGCTCCTCTTCGTGTGCCTAAAGAGAAAGGATTTGGGGGTTCACCTCATACTCCCATTACATTGCCATCTTGGTTGTCAGAAGAGGATGTCAACTACTATGCCAACAAGTTCAGACAGTCAGGTTTCACTGGTGGATTAAACTACTATCGAGCTATGGACCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTGGGAGCTGACCGCGCCATGGACCGGTGTACAAATAAAGGTCCCCGTTAAGTTCATCATAGGGGATGTGGACCTAACTTACAATACACCTGGTGTTAAGGAATATATCCACAAAGGTGGGTTCCAAAAAATGGTGCCATTCTTGCAAGAAGTAGTTATCATGGAAGGAGTTGCACACTTCATCAACCAAGAAAGACCAGAAGAACATTAATGACCACATATATGACTTTTTTCACAAGTTCTAAGGTGTGTCT-ATTTTAATCATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E407822" ref_strand="+" ref_description="SGN-E407822 [PPI-8-L19]">
      <seq>attgcccttctagatgctctgggtctcgatcaggtgttccttgttggacatgattggggtgctgttatagcttggcatgtatgccttttgcgacctgataggatcaaagcactggttaatatgagcgttgtcttccaccccaggaaccccaagagaaagcctattgaatctttgcgtgctgtcctcggggatgattactatatttgcagatttcaggaatatggagaggcagaagaggagtttgctcgtgttgatactgcaagactaatcgcgaaatttttaacatcacgcaatccagctcctcttcgtgtgcctaaagagaaaggatttgggggttcacctcatactcccattacattgccatcttggttgtcagaagaggatgtcaactactatgccaacaagttcagacagtcaggttttactggtggattaaactactatcgagctatggacctaaactgggagctgaccgcgccatggaccggtgtacaaataaaggtccccgttaagttcatcataggggatgtggacctaacttacaatacacctggtgttaaggaatatatccacaaaggtgggttccaaaaaatggtgccattcttngcagaagtagttatcatggaaagagttgcacacttcattcaccaagaaagaccagaagaaattaatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25590" stop="30323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25890" g_stop="25922" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25923" i_stop="27186" i_length="1264">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27187" g_stop="27369" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="216" r_length="183" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27370" i_stop="28933" i_length="1564">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28934" g_stop="29175" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="458" r_length="242" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29176" i_stop="29806" i_length="631">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29807" g_stop="30023" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="675" r_length="217" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E407822" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E407822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25890" e_stop="25922"/>
          <exon e_start="27187" e_stop="27369"/>
          <exon e_start="28934" e_stop="29175"/>
          <exon e_start="29807" e_stop="30023"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGCCCTTCTAGATGCTCTGGGTCTCGATCAGGTTTGAGGCGAATCTAGAGTTTAAATTTCTAATATATTTGATAGTGAGTTTACGAAGTTAGTGATATGTATATTTGAGTAATTACAGGGAAATATAGGATTTAGTGAAAGTTAGTGTACTACTTAGTTCTCGTTAAGCAATAGAAACTTGAAGTTTGAGTTTTTGATGTTGTGATTTTTTGAACATGTATTTAAATGTAGTACACTTCATTCTACATGACGTCCTACATGTATCCTGTCACATGGAACATAGAACATGTATATGTATGTGTGTTCGTTCAATTTTATACAAGTTTAAGTGTTTACTCCTGTGATTCCAAAGTTGGAGGACATAGACATCACTTGAGACCAAGTTAAATGTCATATTTATGTACCATGTCTAAAAATAAGGTTCCCCTTTAGTAGAGTTCTGTATATCTAAGTGTATAGTATAGTTCGAGTAATTACAGGACGATCTAGGATTTACATACTGTGGTGCACAAGTCAACTAATTATATATGGAGGACACATCAATTAATGGATGTACTGTATGGATGATTTTGTATTTTTTGTTTTAACTTTTTTATGTAATAGGAAGTTAACCTTTTATAGTAGGTTAGCCAGCATTTTTTCTAGGTTATTAATTGATGTTTATTATTGCTTATCACTCTGAAAAAAAATGCTTATTCCATTTCTTTGATGAACACAAACTTTTTCACAGATTCTGCTTTCACATTTGCTTGAGCGTCAAATACCCTGGATATAATTCATCTTCAAATATGATTCTGTCTATTTGCCACCTAAAGTGAGTGTTTTGTGGCGTTGTAGAAATGATTGTACAGGAAGGAACTAGATACATTAGAGAGAGAAAAAAGATGATAATGATAAATTATTAAAGTTAGGGTATAAGCAGGGGCTTCTAGCGGGGTGGCTTTTCTAGATGTTCCAGATTTAAGCCTCCAACTCTATGTTATAGCCTTCAGGAGTCACATAGGCGCTCCTACCAAGTAGAATAGTTATGATATTTCCATCAAGATCAAAGTCTAAGAAGACATTATGTTGAACGATTCGCACCGACTTGACTGGCATGATAGATGGATTGGTAGTTTCTGTTATTTTCAGTTAGGACCTTGTCTCCTTTTTTATCTTCCACTCTCTTTGTAATTTGCCCGTAATTATGTTAATACTTGACCTGATTGTATAATGATTAGTGCATAGTTGGAGTTCCAAACAGTGGTTGCACATGCATTTTTTATATAAATATTTTATTTGCCTCTTTGAATTAGGTGTTCCTTGTTGGACATGATTGGGGTGCTGTTATAGCTTGGCATGTATGCCTTTTGCGACCTGATAGGATCAAAGCACTGGTTAATATGAGCGTTGTCTTCCACCCCAGGAACCCCAAGAGAAAGCCTATTGAATCTATGCGTGCTGTCCTCGGGGATGATTACTATATTTGCAGATTTCAGGTTTCTTGCAGCATCCTTCTCTCCTTTGTTTTTCTTCTATCAACTGTTACATTATTTTCCGTTAGCTCCATTAATTTCAGCTTGGATAAAGGAGGGGATGTTAAGTTGACCGGAGACTCGAAATAGTCTAATGGAGGAAAATATATGTAGTTCATTCACATAGGGGACCTCAATTAAAAATTGTCTGAAAAAGTTTAAGCTAGTGTTTGACCAGAGATTTTGGGAGTAGCTATTAAAAAAATTATCTTTAAATATCTGACCGTGAAAATGTGATCTTCATATATTTTCTAGTTTTGGGACTTCCACTTATATACTTATAAAAATTCAAGTAATATGCATGTTCAAATATAACTTCAATTTTCAAAATCACAACTTCGAAAATTCAAATTTTCAAGTTTCAACTTCAAAAACAGGAGCTAAGGATTCATATAGCTGCCTGCAACTAATTACGGATTGAAGAGATTTTTTTATGATCTTCCTTACTGCATGCACTTACGGATAAAGTGAAGATTTTGGTGATATCATTGCTTCCAATTATTTTATGTCAAATAACTTTTGTGGAAATTCAATGTTCGAATTGTTTTGAGTGCTCATATAGGTTCTGCTATTCTGGGACTTCAAATATGTGATATCTGGCATAAGGTTTCTGAATTTGCTGTCTGCCTTTCGTAAGCTATGTTATTACTCCTTCGGTTTCAATTTGTTTGTATAGTATTGACTTGATATGAAGTTTAAGAAAGTATGGAAGACTTTTAAATTTTGTGGTCTTAAACTAAAGATATTAGAATGTACCAAAATGTTCTTTAATCTTGTGGTGTTAAATATGTCATTTGGAAAATTGGAATTAAAGAGTTGCCTAGAAGGAAGGAAGCATTGTTTTTTTAAACGAACTGAAAAAGGAAAGTAAGAGTCCATGCTTATGATTATTGTCCAGAAGTAGCTGTTGATGCAATTTTCCACTGCACTGCGCACAAAATTTAAGCATTGTTCTGGTCAAGACGTAAAAGACACTCATCTTACTCTGTTTCTTGAATTGTAACTTAGGATCCACACCATGATAAAATACTATCCTCATGATTAGACCGAGTCCCTTTAGATTTTATAAAGTACTCATTAGTGTCCCCATTCTCACCATTCAGCTTTGTTCTAAAAATTTGTTAAATATTTTTTCAATTACTATGCTATCGTGATTTTGATTGCTTAATCCAAGTAAAGTATTTTCTTTTTTTGTATGCTTATATAGGAAACTGAGGAGAACAGAAACTTTTTTCACTTGTATTTGTGTAAAAAGAACATGCTATTTGCATAGGTAGTTCGCAAATTTTTTGGGAAGCTCTGTGTTAAGAACTTATACTTCTTTAGCACCATCTTGTTATATAGAATTTTTATGACCTTTTGATTTATCATTTGAAGAAAAGGGTCTTATGTTAGAGTTAAATCATAAAAACAAAAGAAAAACCTAGCTGTTACAAATTTGATGAATTCCGGTGGTTCTCCCTCATCGCTGAAGACGTTATTTAATCATCGCTGCTGAAATCACCCTTTCAAATGTGTTGTTTCTTAGGAATATGGAGAGGCAGAAGAGGAGTTTGCTCGTGTTGATACCGCTAGACTAATCGCGAAATTTTTAACATCACGCAATCCAGCTCCTCTTCGTGTGCCTAAAGAGAAAGGATTTGGGGGTTCACCACATACTCCCATTACATTGCCATCTTGGTTGTCAGAAGAGGATGTCAACTACTATGCCAACAAGTTCAGACAGTCAGGTTTTACTGGTGGATTAAACTACTATCGAGCTATGGACCTGTGAGTTGCCTAATCATTTTTTTAACCAAATGACCTATTTGTTCAAGAACTCTTAATTTTATTTTTTGCTCAAATTTTTTGTGGTATTGTTTCTAAATGAGAACTATGAATGGTTCGGGGTAAAATTTATTAACTGAGAACTAATCCTCGTCGTCTTGGTAAATAACTCAACATTTAACCAAGTGCAACATTTAACCTTTTTGTAGCATGAGTGTTAACAAACAATAGCAGACAATATTATGCTGATTTTAGAATATATATACATTAAATACCTAGTTTTATGAAGAGATCACGGGTTCACAGGCCCCATATTTTCGCCTATAAATTCACCCGGGATATCATGGATCAACCTAATAGTTTTATGTTCTGATACCTGCTTATAAGCAAATGTTACTTTACGAAGCTGATGCAACCTAATATACTCACTTCAACTGAACCCGGTATCTTCAACATGCAACATAGAGATACATGTGTATAAGAGACTAACCAACCTCATATTTATCATAGGATTGTTATCTTTTATCCCATCAAACAAACAACCCCGTAAGTCTTTTATGTATACAATTATATACAATGCATGATAGCTGTTTGTGTGGCCATTTTATTATTGTTTTATTTTTAAATGTTTCAGAAACTGGGAGCTGACCGCGCCATGGACCGGTGTACAAATTAAGGTCCCTGTTAAGTTCATCGTAGGGGATGTGGACCTAACTTACAATACACCTGGTGTTAAGGAATATATCCACAAAGGTGGTTTCCAAAAAGTGGTGCCATTCTTGCAAGAAGTAGTTATCATGGAAGGAGTTGCACACTTCATCAACCAAGAAAGACCAGAAGAAATTAATGAC</genome_strand>
        <mrna_strand>ATTGCCCTTCTAGATGCTCTGGGTCTCGATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCCTTGTTGGACATGATTGGGGTGCTGTTATAGCTTGGCATGTATGCCTTTTGCGACCTGATAGGATCAAAGCACTGGTTAATATGAGCGTTGTCTTCCACCCCAGGAACCCCAAGAGAAAGCCTATTGAATCTTTGCGTGCTGTCCTCGGGGATGATTACTATATTTGCAGATTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATGGAGAGGCAGAAGAGGAGTTTGCTCGTGTTGATACTGCAAGACTAATCGCGAAATTTTTAACATCACGCAATCCAGCTCCTCTTCGTGTGCCTAAAGAGAAAGGATTTGGGGGTTCACCTCATACTCCCATTACATTGCCATCTTGGTTGTCAGAAGAGGATGTCAACTACTATGCCAACAAGTTCAGACAGTCAGGTTTTACTGGTGGATTAAACTACTATCGAGCTATGGACCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTGGGAGCTGACCGCGCCATGGACCGGTGTACAAATAAAGGTCCCCGTTAAGTTCATCATAGGGGATGTGGACCTAACTTACAATACACCTGGTGTTAAGGAATATATCCACAAAGGTGGGTTCCAAAAAATGGTGCCATTCTTNGCAGAAGTAGTTATCATGGAAAGAGTTGCACACTTCATTCACCAAGAAAGACCAGAAGAAATTAATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372234" ref_strand="+" ref_description="SGN-E372234 [TUS-30-F15]">
      <seq>ctcgatcaggtgttccttgttggacatgattggggtgctgttatagcttggcatgtatgccttttgcgacctgataggatcaaagcactggttaatatgagcgttgtcttccaccccaggaaccccaagagaaagcctattgaatctatgcgtgctgtcctcggggatgattactatatttgcagatttcaggaatatggagaggcagaagaggagtttgctcgtgttgataccgctagactaatcgcgaaatttttaacatcacgcaatccagctcctcttcgtgtgcctaaagagaaaggatttgggggttcaccacatactcccattacattgccatcttggttgtcagaagaggatgtcaactactatgccaacaagttcagacagtcaggttttactggtggattaaactactatcgagctatggacctaaactgggagctgaccgcgccatggaccggtgtacaaattaaggtccctgttaagttcatcgtaggggatgtggacctaacttacaatacacctggtgttaaggaatatatccacaaaggtggtttccaaaaagtggtgccattcttgcaagaagtagttatcatggaaggagttgcacacttcatcaaccaagaaagaccagaagaaattaatgaccacatatatgacttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26878" stop="30340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27187" g_stop="27369" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="192" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27370" i_stop="28933" i_length="1564">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28934" g_stop="29175" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="434" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29176" i_stop="29806" i_length="631">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29807" g_stop="30040" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="668" r_length="234" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E372234" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372234" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27187" e_stop="27369"/>
          <exon e_start="28934" e_stop="29175"/>
          <exon e_start="29807" e_stop="30040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTCCTTGTTGGACATGATTGGGGTGCTGTTATAGCTTGGCATGTATGCCTTTTGCGACCTGATAGGATCAAAGCACTGGTTAATATGAGCGTTGTCTTCCACCCCAGGAACCCCAAGAGAAAGCCTATTGAATCTATGCGTGCTGTCCTCGGGGATGATTACTATATTTGCAGATTTCAGGTTTCTTGCAGCATCCTTCTCTCCTTTGTTTTTCTTCTATCAACTGTTACATTATTTTCCGTTAGCTCCATTAATTTCAGCTTGGATAAAGGAGGGGATGTTAAGTTGACCGGAGACTCGAAATAGTCTAATGGAGGAAAATATATGTAGTTCATTCACATAGGGGACCTCAATTAAAAATTGTCTGAAAAAGTTTAAGCTAGTGTTTGACCAGAGATTTTGGGAGTAGCTATTAAAAAAATTATCTTTAAATATCTGACCGTGAAAATGTGATCTTCATATATTTTCTAGTTTTGGGACTTCCACTTATATACTTATAAAAATTCAAGTAATATGCATGTTCAAATATAACTTCAATTTTCAAAATCACAACTTCGAAAATTCAAATTTTCAAGTTTCAACTTCAAAAACAGGAGCTAAGGATTCATATAGCTGCCTGCAACTAATTACGGATTGAAGAGATTTTTTTATGATCTTCCTTACTGCATGCACTTACGGATAAAGTGAAGATTTTGGTGATATCATTGCTTCCAATTATTTTATGTCAAATAACTTTTGTGGAAATTCAATGTTCGAATTGTTTTGAGTGCTCATATAGGTTCTGCTATTCTGGGACTTCAAATATGTGATATCTGGCATAAGGTTTCTGAATTTGCTGTCTGCCTTTCGTAAGCTATGTTATTACTCCTTCGGTTTCAATTTGTTTGTATAGTATTGACTTGATATGAAGTTTAAGAAAGTATGGAAGACTTTTAAATTTTGTGGTCTTAAACTAAAGATATTAGAATGTACCAAAATGTTCTTTAATCTTGTGGTGTTAAATATGTCATTTGGAAAATTGGAATTAAAGAGTTGCCTAGAAGGAAGGAAGCATTGTTTTTTTAAACGAACTGAAAAAGGAAAGTAAGAGTCCATGCTTATGATTATTGTCCAGAAGTAGCTGTTGATGCAATTTTCCACTGCACTGCGCACAAAATTTAAGCATTGTTCTGGTCAAGACGTAAAAGACACTCATCTTACTCTGTTTCTTGAATTGTAACTTAGGATCCACACCATGATAAAATACTATCCTCATGATTAGACCGAGTCCCTTTAGATTTTATAAAGTACTCATTAGTGTCCCCATTCTCACCATTCAGCTTTGTTCTAAAAATTTGTTAAATATTTTTTCAATTACTATGCTATCGTGATTTTGATTGCTTAATCCAAGTAAAGTATTTTCTTTTTTTGTATGCTTATATAGGAAACTGAGGAGAACAGAAACTTTTTTCACTTGTATTTGTGTAAAAAGAACATGCTATTTGCATAGGTAGTTCGCAAATTTTTTGGGAAGCTCTGTGTTAAGAACTTATACTTCTTTAGCACCATCTTGTTATATAGAATTTTTATGACCTTTTGATTTATCATTTGAAGAAAAGGGTCTTATGTTAGAGTTAAATCATAAAAACAAAAGAAAAACCTAGCTGTTACAAATTTGATGAATTCCGGTGGTTCTCCCTCATCGCTGAAGACGTTATTTAATCATCGCTGCTGAAATCACCCTTTCAAATGTGTTGTTTCTTAGGAATATGGAGAGGCAGAAGAGGAGTTTGCTCGTGTTGATACCGCTAGACTAATCGCGAAATTTTTAACATCACGCAATCCAGCTCCTCTTCGTGTGCCTAAAGAGAAAGGATTTGGGGGTTCACCACATACTCCCATTACATTGCCATCTTGGTTGTCAGAAGAGGATGTCAACTACTATGCCAACAAGTTCAGACAGTCAGGTTTTACTGGTGGATTAAACTACTATCGAGCTATGGACCTGTGAGTTGCCTAATCATTTTTTTAACCAAATGACCTATTTGTTCAAGAACTCTTAATTTTATTTTTTGCTCAAATTTTTTGTGGTATTGTTTCTAAATGAGAACTATGAATGGTTCGGGGTAAAATTTATTAACTGAGAACTAATCCTCGTCGTCTTGGTAAATAACTCAACATTTAACCAAGTGCAACATTTAACCTTTTTGTAGCATGAGTGTTAACAAACAATAGCAGACAATATTATGCTGATTTTAGAATATATATACATTAAATACCTAGTTTTATGAAGAGATCACGGGTTCACAGGCCCCATATTTTCGCCTATAAATTCACCCGGGATATCATGGATCAACCTAATAGTTTTATGTTCTGATACCTGCTTATAAGCAAATGTTACTTTACGAAGCTGATGCAACCTAATATACTCACTTCAACTGAACCCGGTATCTTCAACATGCAACATAGAGATACATGTGTATAAGAGACTAACCAACCTCATATTTATCATAGGATTGTTATCTTTTATCCCATCAAACAAACAACCCCGTAAGTCTTTTATGTATACAATTATATACAATGCATGATAGCTGTTTGTGTGGCCATTTTATTATTGTTTTATTTTTAAATGTTTCAGAAACTGGGAGCTGACCGCGCCATGGACCGGTGTACAAATTAAGGTCCCTGTTAAGTTCATCGTAGGGGATGTGGACCTAACTTACAATACACCTGGTGTTAAGGAATATATCCACAAAGGTGGTTTCCAAAAAGTGGTGCCATTCTTGCAAGAAGTAGTTATCATGGAAGGAGTTGCACACTTCATCAACCAAGAAAGACCAGAAGAAATTAATGACCACATATATGACTTTTT</genome_strand>
        <mrna_strand>GTGTTCCTTGTTGGACATGATTGGGGTGCTGTTATAGCTTGGCATGTATGCCTTTTGCGACCTGATAGGATCAAAGCACTGGTTAATATGAGCGTTGTCTTCCACCCCAGGAACCCCAAGAGAAAGCCTATTGAATCTATGCGTGCTGTCCTCGGGGATGATTACTATATTTGCAGATTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATGGAGAGGCAGAAGAGGAGTTTGCTCGTGTTGATACCGCTAGACTAATCGCGAAATTTTTAACATCACGCAATCCAGCTCCTCTTCGTGTGCCTAAAGAGAAAGGATTTGGGGGTTCACCACATACTCCCATTACATTGCCATCTTGGTTGTCAGAAGAGGATGTCAACTACTATGCCAACAAGTTCAGACAGTCAGGTTTTACTGGTGGATTAAACTACTATCGAGCTATGGACCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTGGGAGCTGACCGCGCCATGGACCGGTGTACAAATTAAGGTCCCTGTTAAGTTCATCGTAGGGGATGTGGACCTAACTTACAATACACCTGGTGTTAAGGAATATATCCACAAAGGTGGTTTCCAAAAAGTGGTGCCATTCTTGCAAGAAGTAGTTATCATGGAAGGAGTTGCACACTTCATCAACCAAGAAAGACCAGAAGAAATTAATGACCACATATATGACTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283229" ref_strand="+" ref_description="SGN-E283229 [cLER-17-J20]">
      <seq>ctcgatcaggtgttccttgttggacatgattggggtgctgttatagcttggcatgtatgccttttgcgacctgataggatcaaagcactggttaatatgagcgttgtcttccaccccaggaaccccaagagaaagcctattgaatctatgcgtgctgtcctcggggatgattactatatttgcagatttcaggaatatggagaggcagaagaggagtttgctcgtgttgataccgctagactaatcgcgaaatttttaacatcacgcaatccagctcctcttcgtgtgcctaaagagaaaggatttgggggttcaccacatactcccattacattgccatcttggttgtcagaagaggatgtcaactactatgccaacaagttcagacagtcaggttttactggtggattaaactactatcgagctatggacctaaactgggagctgaccgcgccatggaccggtgtacaaattaaggtccctgttaagttcatcgtaggggatgtggacctaacttacaatacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26878" stop="30199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27187" g_stop="27369" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="192" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27370" i_stop="28933" i_length="1564">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28934" g_stop="29175" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="434" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29176" i_stop="29806" i_length="631">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29807" g_stop="29899" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="527" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E283229" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27187" e_stop="27369"/>
          <exon e_start="28934" e_stop="29175"/>
          <exon e_start="29807" e_stop="29899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTCCTTGTTGGACATGATTGGGGTGCTGTTATAGCTTGGCATGTATGCCTTTTGCGACCTGATAGGATCAAAGCACTGGTTAATATGAGCGTTGTCTTCCACCCCAGGAACCCCAAGAGAAAGCCTATTGAATCTATGCGTGCTGTCCTCGGGGATGATTACTATATTTGCAGATTTCAGGTTTCTTGCAGCATCCTTCTCTCCTTTGTTTTTCTTCTATCAACTGTTACATTATTTTCCGTTAGCTCCATTAATTTCAGCTTGGATAAAGGAGGGGATGTTAAGTTGACCGGAGACTCGAAATAGTCTAATGGAGGAAAATATATGTAGTTCATTCACATAGGGGACCTCAATTAAAAATTGTCTGAAAAAGTTTAAGCTAGTGTTTGACCAGAGATTTTGGGAGTAGCTATTAAAAAAATTATCTTTAAATATCTGACCGTGAAAATGTGATCTTCATATATTTTCTAGTTTTGGGACTTCCACTTATATACTTATAAAAATTCAAGTAATATGCATGTTCAAATATAACTTCAATTTTCAAAATCACAACTTCGAAAATTCAAATTTTCAAGTTTCAACTTCAAAAACAGGAGCTAAGGATTCATATAGCTGCCTGCAACTAATTACGGATTGAAGAGATTTTTTTATGATCTTCCTTACTGCATGCACTTACGGATAAAGTGAAGATTTTGGTGATATCATTGCTTCCAATTATTTTATGTCAAATAACTTTTGTGGAAATTCAATGTTCGAATTGTTTTGAGTGCTCATATAGGTTCTGCTATTCTGGGACTTCAAATATGTGATATCTGGCATAAGGTTTCTGAATTTGCTGTCTGCCTTTCGTAAGCTATGTTATTACTCCTTCGGTTTCAATTTGTTTGTATAGTATTGACTTGATATGAAGTTTAAGAAAGTATGGAAGACTTTTAAATTTTGTGGTCTTAAACTAAAGATATTAGAATGTACCAAAATGTTCTTTAATCTTGTGGTGTTAAATATGTCATTTGGAAAATTGGAATTAAAGAGTTGCCTAGAAGGAAGGAAGCATTGTTTTTTTAAACGAACTGAAAAAGGAAAGTAAGAGTCCATGCTTATGATTATTGTCCAGAAGTAGCTGTTGATGCAATTTTCCACTGCACTGCGCACAAAATTTAAGCATTGTTCTGGTCAAGACGTAAAAGACACTCATCTTACTCTGTTTCTTGAATTGTAACTTAGGATCCACACCATGATAAAATACTATCCTCATGATTAGACCGAGTCCCTTTAGATTTTATAAAGTACTCATTAGTGTCCCCATTCTCACCATTCAGCTTTGTTCTAAAAATTTGTTAAATATTTTTTCAATTACTATGCTATCGTGATTTTGATTGCTTAATCCAAGTAAAGTATTTTCTTTTTTTGTATGCTTATATAGGAAACTGAGGAGAACAGAAACTTTTTTCACTTGTATTTGTGTAAAAAGAACATGCTATTTGCATAGGTAGTTCGCAAATTTTTTGGGAAGCTCTGTGTTAAGAACTTATACTTCTTTAGCACCATCTTGTTATATAGAATTTTTATGACCTTTTGATTTATCATTTGAAGAAAAGGGTCTTATGTTAGAGTTAAATCATAAAAACAAAAGAAAAACCTAGCTGTTACAAATTTGATGAATTCCGGTGGTTCTCCCTCATCGCTGAAGACGTTATTTAATCATCGCTGCTGAAATCACCCTTTCAAATGTGTTGTTTCTTAGGAATATGGAGAGGCAGAAGAGGAGTTTGCTCGTGTTGATACCGCTAGACTAATCGCGAAATTTTTAACATCACGCAATCCAGCTCCTCTTCGTGTGCCTAAAGAGAAAGGATTTGGGGGTTCACCACATACTCCCATTACATTGCCATCTTGGTTGTCAGAAGAGGATGTCAACTACTATGCCAACAAGTTCAGACAGTCAGGTTTTACTGGTGGATTAAACTACTATCGAGCTATGGACCTGTGAGTTGCCTAATCATTTTTTTAACCAAATGACCTATTTGTTCAAGAACTCTTAATTTTATTTTTTGCTCAAATTTTTTGTGGTATTGTTTCTAAATGAGAACTATGAATGGTTCGGGGTAAAATTTATTAACTGAGAACTAATCCTCGTCGTCTTGGTAAATAACTCAACATTTAACCAAGTGCAACATTTAACCTTTTTGTAGCATGAGTGTTAACAAACAATAGCAGACAATATTATGCTGATTTTAGAATATATATACATTAAATACCTAGTTTTATGAAGAGATCACGGGTTCACAGGCCCCATATTTTCGCCTATAAATTCACCCGGGATATCATGGATCAACCTAATAGTTTTATGTTCTGATACCTGCTTATAAGCAAATGTTACTTTACGAAGCTGATGCAACCTAATATACTCACTTCAACTGAACCCGGTATCTTCAACATGCAACATAGAGATACATGTGTATAAGAGACTAACCAACCTCATATTTATCATAGGATTGTTATCTTTTATCCCATCAAACAAACAACCCCGTAAGTCTTTTATGTATACAATTATATACAATGCATGATAGCTGTTTGTGTGGCCATTTTATTATTGTTTTATTTTTAAATGTTTCAGAAACTGGGAGCTGACCGCGCCATGGACCGGTGTACAAATTAAGGTCCCTGTTAAGTTCATCGTAGGGGATGTGGACCTAACTTACAATACACC</genome_strand>
        <mrna_strand>GTGTTCCTTGTTGGACATGATTGGGGTGCTGTTATAGCTTGGCATGTATGCCTTTTGCGACCTGATAGGATCAAAGCACTGGTTAATATGAGCGTTGTCTTCCACCCCAGGAACCCCAAGAGAAAGCCTATTGAATCTATGCGTGCTGTCCTCGGGGATGATTACTATATTTGCAGATTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATGGAGAGGCAGAAGAGGAGTTTGCTCGTGTTGATACCGCTAGACTAATCGCGAAATTTTTAACATCACGCAATCCAGCTCCTCTTCGTGTGCCTAAAGAGAAAGGATTTGGGGGTTCACCACATACTCCCATTACATTGCCATCTTGGTTGTCAGAAGAGGATGTCAACTACTATGCCAACAAGTTCAGACAGTCAGGTTTTACTGGTGGATTAAACTACTATCGAGCTATGGACCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTGGGAGCTGACCGCGCCATGGACCGGTGTACAAATTAAGGTCCCTGTTAAGTTCATCGTAGGGGATGTGGACCTAACTTACAATACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372233" ref_strand="+" ref_description="SGN-E372233 [TUS-30-F15](-)">
      <seq>aatttttaacatcacgcaatccagctcctcttcgtgtgcctaaagagaaaggatttgggggttcaccacatactcccattacattgccatcttggttgtcagaagaggatgtcaactactatgccaacaagttcagacagtcaggttttactggtggattaaactactatcgagctatggacctaaactgggagctgaccgcgccatggaccggtgtacaaattaaggtccctgttaagttcatcgtaggggatgtggacctaacttacaatacacctggtgttaaggaatatatccacaaaggtggtttccaaaaagtggtgccattcttgcaagaagtagttatcatggaaggagttgcacacttcatcaaccaagaaagaccagaagaaattaatgaccacatatatgacttttttcaaaagttttaaggtgtctgtaattttaactttttatcatggattgctttgttgctttgaatcttttttcaagtctttttatgtgtgtgggataaagggcacatggtctatcggaaatagcctctctatcccaaaaggtagagataggtttgcattaccatcctcataccccacttgtgaattacactagatatgttgttattagaatataagaccagtttatgtatcttaaaacttcaaagcttttactaaagaattcagcttttctggactatttttaatttggtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28692" stop="30630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28992" g_stop="29175" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29176" i_stop="29806" i_length="631">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29807" g_stop="30344" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="722" r_length="538" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E372233" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28992" e_stop="29175"/>
          <exon e_start="29807" e_stop="30344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTAACATCACGCAATCCAGCTCCTCTTCGTGTGCCTAAAGAGAAAGGATTTGGGGGTTCACCACATACTCCCATTACATTGCCATCTTGGTTGTCAGAAGAGGATGTCAACTACTATGCCAACAAGTTCAGACAGTCAGGTTTTACTGGTGGATTAAACTACTATCGAGCTATGGACCTGTGAGTTGCCTAATCATTTTTTTAACCAAATGACCTATTTGTTCAAGAACTCTTAATTTTATTTTTTGCTCAAATTTTTTGTGGTATTGTTTCTAAATGAGAACTATGAATGGTTCGGGGTAAAATTTATTAACTGAGAACTAATCCTCGTCGTCTTGGTAAATAACTCAACATTTAACCAAGTGCAACATTTAACCTTTTTGTAGCATGAGTGTTAACAAACAATAGCAGACAATATTATGCTGATTTTAGAATATATATACATTAAATACCTAGTTTTATGAAGAGATCACGGGTTCACAGGCCCCATATTTTCGCCTATAAATTCACCCGGGATATCATGGATCAACCTAATAGTTTTATGTTCTGATACCTGCTTATAAGCAAATGTTACTTTACGAAGCTGATGCAACCTAATATACTCACTTCAACTGAACCCGGTATCTTCAACATGCAACATAGAGATACATGTGTATAAGAGACTAACCAACCTCATATTTATCATAGGATTGTTATCTTTTATCCCATCAAACAAACAACCCCGTAAGTCTTTTATGTATACAATTATATACAATGCATGATAGCTGTTTGTGTGGCCATTTTATTATTGTTTTATTTTTAAATGTTTCAGAAACTGGGAGCTGACCGCGCCATGGACCGGTGTACAAATTAAGGTCCCTGTTAAGTTCATCGTAGGGGATGTGGACCTAACTTACAATACACCTGGTGTTAAGGAATATATCCACAAAGGTGGTTTCCAAAAAGTGGTGCCATTCTTGCAAGAAGTAGTTATCATGGAAGGAGTTGCACACTTCATCAACCAAGAAAGACCAGAAGAAATTAATGACCACATATATGACTTTTTTCAAAAGTTCTAAGGTGTCTGTAATTTTAACTTTTTATCATGGATTGCTTTGTTGCTTTGAATCTTTTTTCAAGTCTTTTTATGTGTGTGGGATAAAGGGCACATGGTCTATCGGAAATAGCCTCTCTATCCCAAAAGGTAGAGATAGGTTTGCATTACCATCCTCATACCCCACTTGTGAATTACACTAGATATGTTGTTATTAGAATATAAGACCAGTTTATGTATCTTAAAACTTCAAAGCTTTTACTAAAGAATTCAGCTTTTCTGGACTATTTTTAATTTGGTAACTATGGACAGAATC</genome_strand>
        <mrna_strand>AATTTTTAACATCACGCAATCCAGCTCCTCTTCGTGTGCCTAAAGAGAAAGGATTTGGGGGTTCACCACATACTCCCATTACATTGCCATCTTGGTTGTCAGAAGAGGATGTCAACTACTATGCCAACAAGTTCAGACAGTCAGGTTTTACTGGTGGATTAAACTACTATCGAGCTATGGACCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTGGGAGCTGACCGCGCCATGGACCGGTGTACAAATTAAGGTCCCTGTTAAGTTCATCGTAGGGGATGTGGACCTAACTTACAATACACCTGGTGTTAAGGAATATATCCACAAAGGTGGTTTCCAAAAAGTGGTGCCATTCTTGCAAGAAGTAGTTATCATGGAAGGAGTTGCACACTTCATCAACCAAGAAAGACCAGAAGAAATTAATGACCACATATATGACTTTTTTCAAAAGTTTTAAGGTGTCTGTAATTTTAACTTTTTATCATGGATTGCTTTGTTGCTTTGAATCTTTTTTCAAGTCTTTTTATGTGTGTGGGATAAAGGGCACATGGTCTATCGGAAATAGCCTCTCTATCCCAAAAGGTAGAGATAGGTTTGCATTACCATCCTCATACCCCACTTGTGAATTACACTAGATATGTTGTTATTAGAATATAAGACCAGTTTATGTATCTTAAAACTTCAAAGCTTTTACTAAAGAATTCAGCTTTTCTGGACTATTTTTAATTTGGTAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551877" ref_strand="+" ref_description="SGN-E551877 [cTSB-2-C13]">
      <seq>aagagaaaggatttgggggttcaccacatactcccattacattgccatcttggttgtcagaagaggatgtcaactactatgccaacaagttcagacagtcaggttttactggtggattaaactactatcgagctatggacctaaactgggagctgaccgcgccatggaccggtgtacaaattaaggtccctgttaagttcatcgtaggggatgtggacctaacttacaatacacctggtgttaaggaatatatccacaaaggtggtttccataaagtggtgccattcttgcaagaagtagttatcatggaaggagttgcacacttcatcaaccaagaaagaccagaagaaattaatgaccacatatatgacttttttcaaaagttctaaggtgtctgtaattttaactttttatcatggattgctttgttgctttgaatcttttttcaagtctttttatgtgtgtgggataaagggcacatggtctatcggaaatagcctctctatcccaaaaggtagagataggtttgcattaccatcctcataccccacttgtgaattacactagatatgttgttattagaatataagaccagtttatgtnaaanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28734" stop="30566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29034" g_stop="29175" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29176" i_stop="29806" i_length="631">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29807" g_stop="30266" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="602" r_length="460" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="604" polyA_stop="639"/>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E551877" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29034" e_stop="29175"/>
          <exon e_start="29807" e_stop="30266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAAAGGATTTGGGGGTTCACCACATACTCCCATTACATTGCCATCTTGGTTGTCAGAAGAGGATGTCAACTACTATGCCAACAAGTTCAGACAGTCAGGTTTTACTGGTGGATTAAACTACTATCGAGCTATGGACCTGTGAGTTGCCTAATCATTTTTTTAACCAAATGACCTATTTGTTCAAGAACTCTTAATTTTATTTTTTGCTCAAATTTTTTGTGGTATTGTTTCTAAATGAGAACTATGAATGGTTCGGGGTAAAATTTATTAACTGAGAACTAATCCTCGTCGTCTTGGTAAATAACTCAACATTTAACCAAGTGCAACATTTAACCTTTTTGTAGCATGAGTGTTAACAAACAATAGCAGACAATATTATGCTGATTTTAGAATATATATACATTAAATACCTAGTTTTATGAAGAGATCACGGGTTCACAGGCCCCATATTTTCGCCTATAAATTCACCCGGGATATCATGGATCAACCTAATAGTTTTATGTTCTGATACCTGCTTATAAGCAAATGTTACTTTACGAAGCTGATGCAACCTAATATACTCACTTCAACTGAACCCGGTATCTTCAACATGCAACATAGAGATACATGTGTATAAGAGACTAACCAACCTCATATTTATCATAGGATTGTTATCTTTTATCCCATCAAACAAACAACCCCGTAAGTCTTTTATGTATACAATTATATACAATGCATGATAGCTGTTTGTGTGGCCATTTTATTATTGTTTTATTTTTAAATGTTTCAGAAACTGGGAGCTGACCGCGCCATGGACCGGTGTACAAATTAAGGTCCCTGTTAAGTTCATCGTAGGGGATGTGGACCTAACTTACAATACACCTGGTGTTAAGGAATATATCCACAAAGGTGGTTTCCAAAAAGTGGTGCCATTCTTGCAAGAAGTAGTTATCATGGAAGGAGTTGCACACTTCATCAACCAAGAAAGACCAGAAGAAATTAATGACCACATATATGACTTTTTTCAAAAGTTCTAAGGTGTCTGTAATTTTAACTTTTTATCATGGATTGCTTTGTTGCTTTGAATCTTTTTTCAAGTCTTTTTATGTGTGTGGGATAAAGGGCACATGGTCTATCGGAAATAGCCTCTCTATCCCAAAAGGTAGAGATAGGTTTGCATTACCATCCTCATACCCCACTTGTGAATTACACTAGATATGTTGTTATTAGAATATAAGACCAGTTTATGT</genome_strand>
        <mrna_strand>AAGAGAAAGGATTTGGGGGTTCACCACATACTCCCATTACATTGCCATCTTGGTTGTCAGAAGAGGATGTCAACTACTATGCCAACAAGTTCAGACAGTCAGGTTTTACTGGTGGATTAAACTACTATCGAGCTATGGACCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTGGGAGCTGACCGCGCCATGGACCGGTGTACAAATTAAGGTCCCTGTTAAGTTCATCGTAGGGGATGTGGACCTAACTTACAATACACCTGGTGTTAAGGAATATATCCACAAAGGTGGTTTCCATAAAGTGGTGCCATTCTTGCAAGAAGTAGTTATCATGGAAGGAGTTGCACACTTCATCAACCAAGAAAGACCAGAAGAAATTAATGACCACATATATGACTTTTTTCAAAAGTTCTAAGGTGTCTGTAATTTTAACTTTTTATCATGGATTGCTTTGTTGCTTTGAATCTTTTTTCAAGTCTTTTTATGTGTGTGGGATAAAGGGCACATGGTCTATCGGAAATAGCCTCTCTATCCCAAAAGGTAGAGATAGGTTTGCATTACCATCCTCATACCCCACTTGTGAATTACACTAGATATGTTGTTATTAGAATATAAGACCAGTTTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290677" ref_strand="+" ref_description="SGN-E290677 [cLET-10-K9]">
      <seq>tacaatacacctggtgttaaggaatatatccacaaaggtggtttccaaaaagtggtgccattcttgcaagaagtagttatcatggaaggagttgcacacttcatcaaccaagaaagaccagaagaaattaatgaccacatatatgacttttttcaaaagttctaaggtgtctgtaattttaactttttatcatggattgctttgttgctttgaatcttttttcaagtctttttatgtgtgtgggataaagggcacatggtctatcggaaatagcctctctatcccaaaaggtagagataggtttgcattaccatcctcataccccacttgtgaattacactagatatgttgttattagaatataagaccagtttatgtgtaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29589" stop="30568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29889" g_stop="30266" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="381" polyA_stop="405"/>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E290677" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29889" e_stop="30266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAATACACCTGGTGTTAAGGAATATATCCACAAAGGTGGTTTCCAAAAAGTGGTGCCATTCTTGCAAGAAGTAGTTATCATGGAAGGAGTTGCACACTTCATCAACCAAGAAAGACCAGAAGAAATTAATGACCACATATATGACTTTTTTCAAAAGTTCTAAGGTGTCTGTAATTTTAACTTTTTATCATGGATTGCTTTGTTGCTTTGAATCTTTTTTCAAGTCTTTTTATGTGTGTGGGATAAAGGGCACATGGTCTATCGGAAATAGCCTCTCTATCCCAAAAGGTAGAGATAGGTTTGCATTACCATCCTCATACCCCACTTGTGAATTACACTAGATATGTTGTTATTAGAATATAAGACCAGTTTATGT</genome_strand>
        <mrna_strand>TACAATACACCTGGTGTTAAGGAATATATCCACAAAGGTGGTTTCCAAAAAGTGGTGCCATTCTTGCAAGAAGTAGTTATCATGGAAGGAGTTGCACACTTCATCAACCAAGAAAGACCAGAAGAAATTAATGACCACATATATGACTTTTTTCAAAAGTTCTAAGGTGTCTGTAATTTTAACTTTTTATCATGGATTGCTTTGTTGCTTTGAATCTTTTTTCAAGTCTTTTTATGTGTGTGGGATAAAGGGCACATGGTCTATCGGAAATAGCCTCTCTATCCCAAAAGGTAGAGATAGGTTTGCATTACCATCCTCATACCCCACTTGTGAATTACACTAGATATGTTGTTATTAGAATATAAGACCAGTTTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E433553" ref_strand="+" ref_description="SGN-E433553 [STM-58-L21]">
      <seq>cagccgttcttactcgagaggaaagagtggtagccgtagccgcagttacagtcgtagccggagcagaaggtgtggattatgtagtttgcaggttttatagtttgttacttcacctttgaatgctactatgtatctcattgctgctctctttcctagcagcaaatctcctaaagctaaatcgtcaaagcgtacaaaatctcgttctagatctgtctcttctcagcctcgttctgggttaaaaggacgctctttgtcaaggtaatcttccttactggtcatgtgctatccattttgttgttggggcaggctatgtaaaagtagcatatagtacaaggttaatgtatatttttatgcaagtccttgtacttgtctttttttgagtcaaaagtccttgtaactatcagtttatttgaatcattttaatcttttcgttgtgaaagccacctgggaattaactgttgcatcttgcacctcattcatttagtgggcaagcagctgagcactttgtttccaacacttaatcttgactagactttgtattgttgttgacatgagatggctttgaagcaaaaagttgttttgcagtgtgaccaatttaacatttttcacacaagttgcttgtaaatttgacaaattcaaattgcaaatctcatctgcaaaatgattttaattgttccctcttctttattttcgagaagcattattttggttgtacattatttacgatagatgtggtaagttttggtcccacaacggcctttcttcccccgtatatatagagcaacagatcatgtgtattgcgtatgaacgttaagcttctaatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34389" stop="33020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34089" g_stop="33266" g_length="824"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="825" r_length="825" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E433553" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E433553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34089" e_stop="33266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCCGTTCTTACTCGAGAGGAAAGAGTGGTAGCCGTAGCCGCAGTCGAAGTTACAGTCGCAGCCGGAGCAGAAGGTATGTATTATGTAGTTTGCACGTTTTATAGCTTGTTACTTCACCTTTGAATGCTACTATGTATCTCATTGCTG--CTCTTTCCTAGCAGCAAATCTCCTAAAGCTAAGTCGTCAAAGCGTACAAGATCTCGTTCTAGATCTGTCTCTTCTCAGCCCCGTTCTGGGTTAAAAGGACGCTCTTTGTCAAGGTAATCTTTCTTACTGGTCATAT-CTACCCATTTTGTTGTTGGGGCAGGTTATGTAAAAGTAGCATATAGTACAAGGTTAATGTATATTTTTATGCAAGTCCTTGTACTGGTCTTTTTTTGAGTCAAAAGTCCTTGTGTCTATCAGTTTATCTTAATCATTTTAATCTTTTCTTTGTGAAAGCCACCTGGGAATTAACTGTTGCATCTTGCACCTCATTTATTTAGTGGGAAATCAGCTGAGCACTTTGTTTCCAACCCTTAATCTTGACTAGACTTTGTATAGTTGTGGACATGAGATGGCTTTGAAGCAAAAAGTTGTTTTGCAGTGTGACCAATTTAACA-TTTTCACACAAGTTGGTTGTAAATTTCACAAATTCAAATTGCAAATTGCATCTGCAAAATGATTTCAATTGTTCCTCCTTTTTGATTTTTCGAGAAGCATTATATTGGTTGTACATTATTTATGATTGATGTGGTAAGTCTTGGCCCGACAACGGCC-TTCTT-TCCC--ATATATAGAGTAACAGATCATGTGTACTGCGTATGAACATTAAGGTTCTGATCN</genome_strand>
        <mrna_strand>CAGCCGTTCTTACTCGAGAGGAAAGAGTGGTAGCCGTAG-C-C-G-C--AGTTACAGTCGTAGCCGGAGCAGAAGGTGTGGATTATGTAGTTTGCAGGTTTTATAGTTTGTTACTTCACCTTTGAATGCTACTATGTATCTCATTGCTGCTCTCTTTCCTAGCAGCAAATCTCCTAAAGCTAAATCGTCAAAGCGTACAAAATCTCGTTCTAGATCTGTCTCTTCTCAGCCTCGTTCTGGGTTAAAAGGACGCTCTTTGTCAAGGTAATCTTCCTTACTGGTCATGTGCTATCCATTTTGTTGTTGGGGCAGGCTATGTAAAAGTAGCATATAGTACAAGGTTAATGTATATTTTTATGCAAGTCCTTGTACTTGTCTTTTTTTGAGTCAAAAGTCCTTGTAACTATCAGTTTATTTGAATCATTTTAATCTTTTCGTTGTGAAAGCCACCTGGGAATTAACTGTTGCATCTTGCACCTCATTCATTTAGTGGGCAAGCAGCTGAGCACTTTGTTTCCAACACTTAATCTTGACTAGACTTTGTATTGTTGTTGACATGAGATGGCTTTGAAGCAAAAAGTTGTTTTGCAGTGTGACCAATTTAACATTTTTCACACAAGTTGCTTGTAAATTTGACAAATTCAAATTGCAAATCTCATCTGCAAAATGATTTTAATTGTTCCCTCTTCTTTA-TTTTCGAGAAGCATTATTTTGGTTGTACATTATTTACGATAGATGTGGTAAGTTTTGGTCCCACAACGGCCTTTCTTCCCCCGTATATATAGAGCAACAGATCATGTGTATTGCGTATGAACGTTAAGCTTCTAATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542931" ref_strand="+" ref_description="SGN-E542931 [TUS-64-H19]">
      <seq>accaactatgacgacatgaaatatgctataaaaaaacttgatgaatctgagtttcggaatgctttttctcgttcaacaattcgggtgaaggaacatgattctagaagccgcagccgcagccgttcttactcgagaggaaagagtggtagccgtagccgcagtcgaagttacagtcgcagccggagcagaagcaaatctcctaaagctaagtcgtcaaagcgtacaagatctcgttctagatctgtctcttctcagccccgttctgggttaaaaggacgctctttgtcaaggtaatctttcttactggtcatatctacccattttgttgttggggcaggttatgtaaaagtagcatatagtacaaggttaatgtatatttttatgcaagtccttgtactggtctttttttgagtcaaaagtccttgtgtctatcagtttatcttaatcattttaatcttttctttgtgaaagccacctgggaattaactgttgcatcttgcacctcatttatttagtgggaaatcagctgagcactttgtttccaacccttaatcttgactagactttgtatagttgtggacatgagatggctttgaagcaaaaagttgttttgcagtgtgaccaatttaacattttcacacaagttgggttgtaaatttcacaaattcaaattgcaaattgcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34731" stop="33134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34431" g_stop="34405" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34404" i_stop="34293" i_length="112">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34292" g_stop="34236" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="84" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34235" i_stop="34122" i_length="114">
            <donor d_prob="0.870" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34121" g_stop="34015" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="191" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34014" i_stop="33927" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.429" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33926" g_stop="33434" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="685" r_length="494" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E542931" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34431" e_stop="34405"/>
          <exon e_start="34292" e_stop="34236"/>
          <exon e_start="34121" e_stop="34015"/>
          <exon e_start="33926" e_stop="33434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAACTATGACGACATGAAATATGCTGTAAGCTATCTCCTGTTTCTTATTCTGTATAATTATCCTCAATTTTTGTTCAAGATATTTGAAATATGTTTATGCTCGACTAACGAGTGTAATTAATTTTCCTTGTATGTAGATAAAAAAACTTGATGAATCTGAGTTTCGGAATGCTTTTTCTCGTTCAACAATTCGGGTATGATGTGATTATAACTCAAATGATATGATTGCAGGATGCTTAGTGCCTTTTCTTTTGTTAGCCTATACCATTGTCTTATGCTTCATAAAAATATTGCTTTGTCTTATGTAGGTGAAGGAACATGATTCTAGAAGCCGCAGCCGCAGCCGTTCTTACTCGAGAGGAAAGAGTGGTAGCCGTAGCCGCAGTCGAAGTTACAGTCGCAGCCGGAGCAGAAGGTATGTATTATGTAGTTTGCACGTTTTATAGCTTGTTACTTCACCTTTGAATGCTACTATGTATCTCATTGCTGCTCTTTCCTAGCAGCAAATCTCCTAAAGCTAAGTCGTCAAAGCGTACAAGATCTCGTTCTAGATCTGTCTCTTCTCAGCCCCGTTCTGGGTTAAAAGGACGCTCTTTGTCAAGGTAATCTTTCTTACTGGTCATATCTACCCATTTTGTTGTTGGGGCAGGTTATGTAAAAGTAGCATATAGTACAAGGTTAATGTATATTTTTATGCAAGTCCTTGTACTGGTCTTTTTTTGAGTCAAAAGTCCTTGTGTCTATCAGTTTATCTTAATCATTTTAATCTTTTCTTTGTGAAAGCCACCTGGGAATTAACTGTTGCATCTTGCACCTCATTTATTTAGTGGGAAATCAGCTGAGCACTTTGTTTCCAACCCTTAATCTTGACTAGACTTTGTATAGTTGTGGACATGAGATGGCTTTGAAGCAAAAAGTTGTTTTGCAGTGTGACCAATTTAACATTTTCACACAAGTT-GGTTGTAAATTTCACAAATTCAAATTGCAAATTGCATC</genome_strand>
        <mrna_strand>ACCAACTATGACGACATGAAATATGCT................................................................................................................ATAAAAAAACTTGATGAATCTGAGTTTCGGAATGCTTTTTCTCGTTCAACAATTCGG..................................................................................................................GTGAAGGAACATGATTCTAGAAGCCGCAGCCGCAGCCGTTCTTACTCGAGAGGAAAGAGTGGTAGCCGTAGCCGCAGTCGAAGTTACAGTCGCAGCCGGAGCAGAAG........................................................................................CAAATCTCCTAAAGCTAAGTCGTCAAAGCGTACAAGATCTCGTTCTAGATCTGTCTCTTCTCAGCCCCGTTCTGGGTTAAAAGGACGCTCTTTGTCAAGGTAATCTTTCTTACTGGTCATATCTACCCATTTTGTTGTTGGGGCAGGTTATGTAAAAGTAGCATATAGTACAAGGTTAATGTATATTTTTATGCAAGTCCTTGTACTGGTCTTTTTTTGAGTCAAAAGTCCTTGTGTCTATCAGTTTATCTTAATCATTTTAATCTTTTCTTTGTGAAAGCCACCTGGGAATTAACTGTTGCATCTTGCACCTCATTTATTTAGTGGGAAATCAGCTGAGCACTTTGTTTCCAACCCTTAATCTTGACTAGACTTTGTATAGTTGTGGACATGAGATGGCTTTGAAGCAAAAAGTTGTTTTGCAGTGTGACCAATTTAACATTTTCACACAAGTTGGGTTGTAAATTTCACAAATTCAAATTGCAAATTGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E403584" ref_strand="+" ref_description="SGN-E403584 [PPC-11-G9]">
      <seq>cagccgttcttactcgagaggaaagagtggtagccgtagccgcagttacagtcgtagccggagcagaaggtgtggattatgtagtttgcaggttttatagtttgttacttcacctttgaatgctactatgtatctcattgctgctctctttcctagcagcaaatctcctaaagctaaatcgtcaaagcgtacaaaatctcgttctagatctgtctcttctcagcctcgttctgggttaaaaggacgctctttgtcaaggtaatcttccttactggtcatgtgctatccattttgttgttggggcaggctatgtaaaagtagcatatagtacaaggttaatgtatatttttatgcaagtccttgtacttgtctttttttgagtcaaaagtccttgtaactatcagtttatttgaatcattttaatcttttcgttgtgaaagccacctgggaattaactgttgcatcttgcacctcattcatttagtgggcaagcagctgagcactttgtttccaacacttaatcttgactagactttgtattgttggtgacatgagatggctttgaagcaaaaagttgttttgcagtgtgaccaatttaacatttttcacacaagttgcttgtaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34389" stop="33161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34089" g_stop="33461" g_length="629"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="627" r_length="627" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E403584" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E403584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34089" e_stop="33461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCCGTTCTTACTCGAGAGGAAAGAGTGGTAGCCGTAGCCGCAGTCGAAGTTACAGTCGCAGCCGGAGCAGAAGGTATGTATTATGTAGTTTGCACGTTTTATAGCTTGTTACTTCACCTTTGAATGCTACTATGTATCTCATTGCTG--CTCTTTCCTAGCAGCAAATCTCCTAAAGCTAAGTCGTCAAAGCGTACAAGATCTCGTTCTAGATCTGTCTCTTCTCAGCCCCGTTCTGGGTTAAAAGGACGCTCTTTGTCAAGGTAATCTTTCTTACTGGTCATAT-CTACCCATTTTGTTGTTGGGGCAGGTTATGTAAAAGTAGCATATAGTACAAGGTTAATGTATATTTTTATGCAAGTCCTTGTACTGGTCTTTTTTTGAGTCAAAAGTCCTTGTGTCTATCAGTTTATCTTAATCATTTTAATCTTTTCTTTGTGAAAGCCACCTGGGAATTAACTGTTGCATCTTGCACCTCATTTATTTAGTGGGAAATCAGCTGAGCACTTTGTTTCCAACCCTTAATCTTGACTAGACTTTGTATAGTTGTGGACATGAGATGGCTTTGAAGCAAAAAGTTGTTTTGCAGTGTGACCAATTTAACA-TTTTCACACAAGTTGGTTGTAAATT</genome_strand>
        <mrna_strand>CAGCCGTTCTTACTCGAGAGGAAAGAGTGGTAGCCGTAG-C-C-G-C--AGTTACAGTCGTAGCCGGAGCAGAAGGTGTGGATTATGTAGTTTGCAGGTTTTATAGTTTGTTACTTCACCTTTGAATGCTACTATGTATCTCATTGCTGCTCTCTTTCCTAGCAGCAAATCTCCTAAAGCTAAATCGTCAAAGCGTACAAAATCTCGTTCTAGATCTGTCTCTTCTCAGCCTCGTTCTGGGTTAAAAGGACGCTCTTTGTCAAGGTAATCTTCCTTACTGGTCATGTGCTATCCATTTTGTTGTTGGGGCAGGCTATGTAAAAGTAGCATATAGTACAAGGTTAATGTATATTTTTATGCAAGTCCTTGTACTTGTCTTTTTTTGAGTCAAAAGTCCTTGTAACTATCAGTTTATTTGAATCATTTTAATCTTTTCGTTGTGAAAGCCACCTGGGAATTAACTGTTGCATCTTGCACCTCATTCATTTAGTGGGCAAGCAGCTGAGCACTTTGTTTCCAACACTTAATCTTGACTAGACTTTGTATTGTTGGTGACATGAGATGGCTTTGAAGCAAAAAGTTGTTTTGCAGTGTGACCAATTTAACATTTTTCACACAAGTTGCTTGTAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303030" ref_strand="+" ref_description="SGN-E303030 [cLEW-26-K22]">
      <seq>ccaactatgacgacatgaaatagggtataataaaacttgatgaatctgagttcccgaatgctttttctcgttcaacaattcgggtgaaggaacatgattctagaagccgcagccgcagccgttcttactcgagaggaaagagtggtagccgtagccgcagtcgaagttacagtcgcagccggagcagaagcaaatctcctaaagctaagtcgccaaagcgtacaagatctcgttctagatctgtctcttctcagccccgttctgggttaaaaggacgctctttgtcaaggtaatctttattactggtcatatctacccattttgttgaaggggcaggttatgtaaaagtagcatatagtacaaggttaatgtatatttttatgcaagtccttgtactggtctttttttgagtcaaaagtccttgtgtctatcagtttatcttaatcattttaatcttttctttgtgaaagccacctgggaattaactgttgcatcttgcacctcatatatttagtgggaaatcacctgagcactttgtttccaacccttaatcttgactaaactttgtataggtgtggacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34730" stop="33234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34430" g_stop="34405" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34404" i_stop="34293" i_length="112">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.959" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34292" g_stop="34236" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="83" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34235" i_stop="34122" i_length="114">
            <donor d_prob="0.870" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34121" g_stop="34015" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="190" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34014" i_stop="33927" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.429" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33926" g_stop="33534" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="583" r_length="393" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E303030" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34430" e_stop="34405"/>
          <exon e_start="34292" e_stop="34236"/>
          <exon e_start="34121" e_stop="34015"/>
          <exon e_start="33926" e_stop="33534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACTATGACGACATGAAATATGCTGTAAGCTATCTCCTGTTTCTTATTCTGTATAATTATCCTCAATTTTTGTTCAAGATATTTGAAATATGTTTATGCTCGACTAACGAGTGTAATTAATTTTCCTTGTATGTAGATAAAAAAACTTGATGAATCTGAGTTTCGGAATGCTTTTTCTCGTTCAACAATTCGGGTATGATGTGATTATAACTCAAATGATATGATTGCAGGATGCTTAGTGCCTTTTCTTTTGTTAGCCTATACCATTGTCTTATGCTTCATAAAAATATTGCTTTGTCTTATGTAGGTGAAGGAACATGATTCTAGAAGCCGCAGCCGCAGCCGTTCTTACTCGAGAGGAAAGAGTGGTAGCCGTAGCCGCAGTCGAAGTTACAGTCGCAGCCGGAGCAGAAGGTATGTATTATGTAGTTTGCACGTTTTATAGCTTGTTACTTCACCTTTGAATGCTACTATGTATCTCATTGCTGCTCTTTCCTAGCAGCAAATCTCCTAAAGCTAAGTCGTCAAAGCGTACAAGATCTCGTTCTAGATCTGTCTCTTCTCAGCCCCGTTCTGGGTTAAAAGGACGCTCTTTGTCAAGGTAATCTTTCTTACTGGTCATATCTACCCATTTTGTTGTTGGGGCAGGTTATGTAAAAGTAGCATATAGTACAAGGTTAATGTATATTTTTATGCAAGTCCTTGTACTGGTCTTTTTTTGAGTCAAAAGTCCTTGTGTCTATCAGTTTATCTTAATCATTTTAATCTTTTCTTTGTGAAAGCCACCTGGGAATTAACTGTTGCATCTTGCACCTCATTTATTTAGTGGGAAATCAGCTGAGCACTTTGTTTCCAACCCTTAATCTTGACTAGACTTTGTATAGTTGTGGACATG</genome_strand>
        <mrna_strand>CCAACTATGACGACATGAAATAGGGT................................................................................................................ATAATAAAACTTGATGAATCTGAGTTCCCGAATGCTTTTTCTCGTTCAACAATTCGG..................................................................................................................GTGAAGGAACATGATTCTAGAAGCCGCAGCCGCAGCCGTTCTTACTCGAGAGGAAAGAGTGGTAGCCGTAGCCGCAGTCGAAGTTACAGTCGCAGCCGGAGCAGAAG........................................................................................CAAATCTCCTAAAGCTAAGTCGCCAAAGCGTACAAGATCTCGTTCTAGATCTGTCTCTTCTCAGCCCCGTTCTGGGTTAAAAGGACGCTCTTTGTCAAGGTAATCTTTATTACTGGTCATATCTACCCATTTTGTTGAAGGGGCAGGTTATGTAAAAGTAGCATATAGTACAAGGTTAATGTATATTTTTATGCAAGTCCTTGTACTGGTCTTTTTTTGAGTCAAAAGTCCTTGTGTCTATCAGTTTATCTTAATCATTTTAATCTTTTCTTTGTGAAAGCCACCTGGGAATTAACTGTTGCATCTTGCACCTCATATATTTAGTGGGAAATCACCTGAGCACTTTGTTTCCAACCCTTAATCTTGACTAAACTTTGTATAGGTGTGGACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705649" ref_strand="+" ref_description="SGN-E705649 [FA27DA06]">
      <seq>cttctctaagcgctctgtgttttcatccttcatcaatcttctagtaaaggaacaatgagtcgttcaagtaggacgatttatgttggtaatcttcctggtgatattcgtgagcgagaagtggaggatctgttctacaagtatggcccgatagcacatattgatctgaaaattccaccaagacccccaggttatgcttttgttgagtttgaagaggcacgcgatgctgaggatgctattcgtgggcgcgatggctatgaatttgatgggcatcgtttgagggttgagcttgcacatggtgggcgtggtaactcatcgtcagatcgttataatagtggcaataatagtggccataatggtggtcgtaataatcacaaatttggagcgcccaaacgtaccgagtatcgagttttagttaccggattgccccattcagcatcctggcaggatctcaaggatcatatgcgtcgagctggggatgtttgtttctcacaagttttccgtgaggggagtgggaccactgggattgtggattataccaactatgacgacatgaaatatgctataaaaaaacttgatgaatctgagtttcggaatgctttttctcgttcaacaattcgggtgaaggaacatgattctagaagccgcagccgcagccgttcttactcgagaggaaagagtggtagccgtagccgcagtcgaagttacagtcgcagccggagcagaagcaaatctcctaaagctaagtcgtcaaagcgtacaagatctcgttctagatctgtctcttctcagccccgttctgggttaaaggacgctctttgtcaagatctccatcaagatccagatccccagtaccatctcgcccaaaacgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38900" stop="33526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38600" g_stop="38552" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38551" i_stop="37767" i_length="785">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37766" g_stop="37678" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="138" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37677" i_stop="37591" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37590" g_stop="37525" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="204" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37524" i_stop="37428" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37427" g_stop="37353" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="279" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37352" i_stop="36975" i_length="378">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36974" g_stop="36848" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="406" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36847" i_stop="36767" i_length="81">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36766" g_stop="36720" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="453" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="36719" i_stop="36613" i_length="107">
            <donor d_prob="0.699" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36612" g_stop="36555" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="511" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="36554" i_stop="34455" i_length="2100">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="34454" g_stop="34405" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="561" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="34404" i_stop="34293" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="34292" g_stop="34236" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="618" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="34235" i_stop="34122" i_length="114">
            <donor d_prob="0.870" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="34121" g_stop="34015" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="725" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="34014" i_stop="33927" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.429" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="33926" g_stop="33828" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="726" r_stop="823" r_length="98" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E705649" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38600" e_stop="38552"/>
          <exon e_start="37766" e_stop="37678"/>
          <exon e_start="37590" e_stop="37525"/>
          <exon e_start="37427" e_stop="37353"/>
          <exon e_start="36974" e_stop="36848"/>
          <exon e_start="36766" e_stop="36720"/>
          <exon e_start="36612" e_stop="36555"/>
          <exon e_start="34454" e_stop="34405"/>
          <exon e_start="34292" e_stop="34236"/>
          <exon e_start="34121" e_stop="34015"/>
          <exon e_start="33926" e_stop="33828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCTAAGCGCTCTGTGTTTTCATCCTTCATCAATCTTCTAGTAAAGGTACGTTCCTTCGGTCTTTGTTAATGGAGGTCCGTTTAATCGGCATCTATCAAACGAAATAGCTAACAAGATCTGTTTTTTAATTTTAGTTTCTTCCGTTTTGCTCATTTTACCCAGCGAAAAATGTATTTCAATTCACTTAAAACGTTGTTCAGAGGCGGATCTAGCATAGAATCAGTCTACATACAGGAAAAATAGCAATAAAGTATCTATACATAATTTGTGTATGTAATTGTGTATCCATTATTAGTGTGTTCTGTATGCAGGAAATGTTTTTTTTCGTCTTGGAAAATAACCGGGTTTCTTACTTAGTTGTGTTCGGTAGGCAAGCGAAAAATATTAGTACAATTATTTGTATGTAATCTAGACAAATACTCTTGAGTTGGGTGGTGGGGATGGTGGCTAAGAGTGTGGTGGTGAAGATGAGGTTGGTTGGAGGGTGGGGAGAACACAATCAATGTGGAATTTTATTTGTTGAACCTGTTTTCACTACTTCCATTGAGGAAGTCAAATTTTTTTATTTTGAAGCAACTTAATTTCCTAGAGAAGATGTTTTCCATAAATTTTACCAACCATGAGAAAACTTGGAAACATTTTTCTGGAAAATGGTTTCATTCGTATCTAACACACCCTATATGTATGTTTGTTACTTTGTTTATGTATTTGTGTGCGAATCAAGTTGATTGCTCAAGTTGTGTTTTTGTGACTTAAGTTCTTCATGAATTTTATCCATTTTTGTTTCTCAGGTGGGTTTTGATTGTATTTTTTTGTTGAATTATTTTTAGGAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAGGTACTTGTATAACACTTAGCTTCATACTTTAGTTGGATGTCATTTACTATGCTCATAAACTTAAATGTGTGTGGCGTATAATTGTAGTATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAGGTAAGTTTTGACTGCATTGGCTAAAATGAATTTCATTGGATATTTCCTTCTCAATTGTTAACCTATTTTGACATTGTTTTGTTGGAACTAAACACAGTTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGGGTTAGTAAAATCTTAACAGCATATAGGATACACACACATGAATCAATTGTATCCTCTGTTTACTCTGAGAAGTATGATTGACTTGCATTTTTGAATCAGGGTTTCCAATTCTTGTATTAATTGCATTTCGTTGACCCTAGCATTTCACCTAAACCATTATGTTTCTTTATTAAATGCTTGTCCCAAATTAGTTGGGATCAGTTTTATAAATTGTCTGTAACCATCCTACTTTATCCAGGCGTATTTTTCTTTTCAAGCTTAGTTTGTCTTTCAAGGCAAATTAACATGTCTAATACATATAAGACACCTAAATGCTAAATAGTTTTCTTTTTGAGGTGCTTAAGATCTAAGCCTACTGAAACTGTTACATGTATGCAGGTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTCAGATCGTTATAATAGTGGCAATAATAGTGGCCATAATGGTGGTCGTAATAATCACAAATTTGGAGCGCCCAAACGTACCGAGTATCGAGGCACGTATGTTATTAATGTGCACATAATTTTCTTTATTGCATTTCATGCCTTCTTGATCTAATTCACTTACTCATTTTCAGTTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAGGTGAGTGGTGTCTGTGTGGTAAATTATAAGGACCGTGGCTAAAAGTGATCTTCCTTTTCTGGTATCTTCTAGCTTCTGAATATTGGTATTCTATGTTTCTTATGTAGGATCATATGCGTCGAGCTGGGGATGTTTGTTTCTCACAAGTTTTCCGTGAGGGGAGTGGTAAGATAATTTGCAACAGATACTAGTTTTATGCTCCTCTTAATTGTCCCTTTGTTTTGTTTGTATAAGGGTTTGTTTTTACTATGCCAAAGGAACTTGCCTATATCAGGACCTATATTGGTAAATTTGGTAAATTAAGAGTCAAGTCTCTATAACTACCCTTTCTCTTTTTTTCCTTTTCCGTCTTTCTGTTGGGTTTTCTTCTTTGAGAAGTGGTTGGAGAAGGATGGATATTTGATCCTTTTTTTTGAGAATAGCAATATATTTTCTGTGGATAACTTGAATTTCAATTGTTTTTATGGCTCTTTAACTTACTACCTTGAGCTGACTATCTTTCATAATGCAACTAGAAAGGCTTTCTCAAAGTAGAATCATTTCTTAAATCTTGTGTTGAATGTGACTGTGGTTCATCATTGGGTCTGCAAGTGTCTTTCCCAACCATATAACAGCTAATATTATCTTTCAGACCCAATCAAAACCAAATCTTGTTCTATGGCCCGTGAATAGATGATATTTTTGGGCTATTGTTGAGAACAAAATTGCTGTACGCTGCAGTAACGTGCATTAGTTATATATTTGATGACTTCTGGCTTAGTTTATAGTTTATAGTTTATACTATAATGTTTAGCCAACTTGGCTGGATAAAGTGACTGCGTCACTCAGTTTGGATGGGATAATGGGTGCTATTACCAATCTTGGTAAAATGGTCAGGTTTGATATATTATATATCCTTTGACTGAAGTTTGTCATTGTACATCATCATTCAAAACATAGTTCCATCCGTTTTAGTCAGAAAACTATTTTTCTCTTCTGGTGCCATAGTAATATAATAGAACAAGAAAGAATTACAGAAAGTTAAAAAGTATTAACATAAAAAAAAAGTAGATGAAAAATTTGTTGGGGTAACGCATAAAGTAAAAAAAATAGCAGGGAAAAATAAAATGGAGCAGAAAAAGAGAAAGGAGGGAAGTCTAAAAGAAATCCTTGGTTTGGGGTTGAGGAAAGACGGTAATGTTTCAACCCAGGTGTTGTAGAAGAGTAGATTAATTATTTTTTGGGGCATTTGTTGGAGAGGTAAGTGGGAGCTCTGTTGGACGATGAGGAGAAGATAGCAGGAAATAAGTGAGCTTATTTTTTCATCTTCCATGTTGAATAACATCCTGTGCTTACCTGTGTATTCCTCACTCTTTGAATAAATGTTGATGTGTGTCTGGATGTAATGCCTGGATTATGTCCCGCCTGGTGATAGTGGTCCTCCATAACAAGATAGTACTGCTATCTGGCTTATTGCATGTTACCAACCTTGAACAAGCCAAGATAATGAAGAGGCTAATCTAATAAGTGGGCTTAACAATGGATACACCAAGAATAGGAGTGGGTCTGGCTCTAATATCATACCATGTTAAGTGGAAAATTTGGGCCCAACTCAACTCCAAAAGGTACCTTAGTGCCAGATCATGCAATAAGATCTCTTTTTCCCTCTTTCCTTCATGTTTCAGATCATGCTAACTCAACTCCAAAAGGTAGCTTAGTGCAAGATCATGCAATAAGATCTCTTTTTACCTCTTTCCTTTAATGTTTCAGATTATGCAATAAGATAACTTTCCTTCTTTCCTTTAATTGTTTCAGTTAGCTTGCTATTAGGTTTTACATAGAAAATTGTCATCATTTTTGTCAGGACAAATATACTAGAGCCTTTATAATTAAGACAGTTAATAGACAGATGGCAAAGATGGTTCGACTCTAAAATAGGAATTTAATAGTTGATTTTACCCTATATAAATGGAATTGAAAATAGTGATTGCCACTCAAAATCTAGGGTCAGCTGAGATTTATTGGATATTTCAATTTTGTGGTTGTGACTAAAATGGCCCGAATGTATGGCTGAGCAGTTTAAAGACCTGTGGAAATAATGTGCTTCAGATTTTTTTTATTCTGTAATCAAATGTGGTGCTGCCTTATCTTTGAAATAATTTCTTGTGCTTCTACTCAATTTTTGTTGTGGCAAGCACCCTACTCTTGCTATGACTTGTGAATTTACTCTCCTTAAGTGATTCTTTTGTGGTGGATGGTGCGCTAACAATCAGTTTTGCTCTTCAGGGACCACTGGGATTGTGGATTATACCAACTATGACGACATGAAATATGCTGTAAGCTATCTCCTGTTTCTTATTCTGTATAATTATCCTCAATTTTTGTTCAAGATATTTGAAATATGTTTATGCTCGACTAACGAGTGTAATTAATTTTCCTTGTATGTAGATAAAAAAACTTGATGAATCTGAGTTTCGGAATGCTTTTTCTCGTTCAACAATTCGGGTATGATGTGATTATAACTCAAATGATATGATTGCAGGATGCTTAGTGCCTTTTCTTTTGTTAGCCTATACCATTGTCTTATGCTTCATAAAAATATTGCTTTGTCTTATGTAGGTGAAGGAACATGATTCTAGAAGCCGCAGCCGCAGCCGTTCTTACTCGAGAGGAAAGAGTGGTAGCCGTAGCCGCAGTCGAAGTTACAGTCGCAGCCGGAGCAGAAGGTATGTATTATGTAGTTTGCACGTTTTATAGCTTGTTACTTCACCTTTGAATGCTACTATGTATCTCATTGCTGCTCTTTCCTAGCAGCAAATCTCCTAAAGCTAAGTCGTCAAAGCGTACAAGATCTCGTTCTAGATCTGTCTCTTCTCAGCCCCGTTCTGGGTTAAAAGGACGCTCTTTGTCAAG</genome_strand>
        <mrna_strand>CTTCTCTAAGCGCTCTGTGTTTTCATCCTTCATCAATCTTCTAGTAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAG.......................................................................................TATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAG.................................................................................................TTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGG..........................................................................................................................................................................................................................................................................................................................................................................................GTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTCAGATCGTTATAATAGTGGCAATAATAGTGGCCATAATGGTGGTCGTAATAATCACAAATTTGGAGCGCCCAAACGTACCGAGTATCGAG.................................................................................TTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAG...........................................................................................................GATCATATGCGTCGAGCTGGGGATGTTTGTTTCTCACAAGTTTTCCGTGAGGGGAGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCACTGGGATTGTGGATTATACCAACTATGACGACATGAAATATGCT................................................................................................................ATAAAAAAACTTGATGAATCTGAGTTTCGGAATGCTTTTTCTCGTTCAACAATTCGG..................................................................................................................GTGAAGGAACATGATTCTAGAAGCCGCAGCCGCAGCCGTTCTTACTCGAGAGGAAAGAGTGGTAGCCGTAGCCGCAGTCGAAGTTACAGTCGCAGCCGGAGCAGAAG........................................................................................CAAATCTCCTAAAGCTAAGTCGTCAAAGCGTACAAGATCTCGTTCTAGATCTGTCTCTTCTCAGCCCCGTTCTGGGTT-AAAGGACGCTCTTTGTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320480" ref_strand="+" ref_description="SGN-E320480 [cTOB-22-N16]">
      <seq>tgttctacaagtatggcccgatagcacatattgatctgaaaattccaccaagacccccaggttatgcttttgttgagtttgaagaggcacgcgatgctgaggatgctattcgtgggcgcgatggctatgaatttgatgggcatcgtttgagggttgagcttgcacatggtgggcgtggtaactcatcgtcagatcgttataatagtggcaataatagtggccataatggtggtcgtaataatcacaaatttggagcgcccaaacgtaccgagtatcgagttttagttaccggattgccccattcagcatcctggcaggatctcaaggatcatatgcgtcgagctggggatgtttgtttctcacaagttttccgtgaggggagtgggaccactgggattgtggattataccaactatgacgacatgaaatatgctataaaaaaacttgatgaatctgagtttcggaatgctttttctcgttcaacaattcgggtgaaggaacatgattctagaagccgcagccgcagccgttcttactcgagaggaaagagtggtagccgtagccgcagtcgaagttacagtcgcagccggagcagaagcaaatctcctaaagctaagtcgtcaaagcgtacaagatctcgttctagatctgtctcttctcagccccgttctgggttaaaaggacgctctttgtncagatctccatcaagatccagatccccagtaccatctcgcccaagacgtgtgagcaaaagccccaaaccacgcaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37892" stop="33526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37688" g_stop="37678" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37677" i_stop="37591" i_length="87">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37590" g_stop="37525" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="77" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37524" i_stop="37428" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37427" g_stop="37353" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="152" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37352" i_stop="36975" i_length="378">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36974" g_stop="36848" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="279" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36847" i_stop="36767" i_length="81">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36766" g_stop="36720" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="326" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36719" i_stop="36613" i_length="107">
            <donor d_prob="0.699" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36612" g_stop="36555" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="384" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="36554" i_stop="34455" i_length="2100">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="34454" g_stop="34405" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="434" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="34404" i_stop="34293" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="34292" g_stop="34236" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="491" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="34235" i_stop="34122" i_length="114">
            <donor d_prob="0.870" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="34121" g_stop="34015" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="598" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="34014" i_stop="33927" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.429" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="33926" g_stop="33828" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="697" r_length="99" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E320480" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37688" e_stop="37678"/>
          <exon e_start="37590" e_stop="37525"/>
          <exon e_start="37427" e_stop="37353"/>
          <exon e_start="36974" e_stop="36848"/>
          <exon e_start="36766" e_stop="36720"/>
          <exon e_start="36612" e_stop="36555"/>
          <exon e_start="34454" e_stop="34405"/>
          <exon e_start="34292" e_stop="34236"/>
          <exon e_start="34121" e_stop="34015"/>
          <exon e_start="33926" e_stop="33828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTCTACAAGGTACTTGTATAACACTTAGCTTCATACTTTAGTTGGATGTCATTTACTATGCTCATAAACTTAAATGTGTGTGGCGTATAATTGTAGTATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAGGTAAGTTTTGACTGCATTGGCTAAAATGAATTTCATTGGATATTTCCTTCTCAATTGTTAACCTATTTTGACATTGTTTTGTTGGAACTAAACACAGTTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGGGTTAGTAAAATCTTAACAGCATATAGGATACACACACATGAATCAATTGTATCCTCTGTTTACTCTGAGAAGTATGATTGACTTGCATTTTTGAATCAGGGTTTCCAATTCTTGTATTAATTGCATTTCGTTGACCCTAGCATTTCACCTAAACCATTATGTTTCTTTATTAAATGCTTGTCCCAAATTAGTTGGGATCAGTTTTATAAATTGTCTGTAACCATCCTACTTTATCCAGGCGTATTTTTCTTTTCAAGCTTAGTTTGTCTTTCAAGGCAAATTAACATGTCTAATACATATAAGACACCTAAATGCTAAATAGTTTTCTTTTTGAGGTGCTTAAGATCTAAGCCTACTGAAACTGTTACATGTATGCAGGTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTCAGATCGTTATAATAGTGGCAATAATAGTGGCCATAATGGTGGTCGTAATAATCACAAATTTGGAGCGCCCAAACGTACCGAGTATCGAGGCACGTATGTTATTAATGTGCACATAATTTTCTTTATTGCATTTCATGCCTTCTTGATCTAATTCACTTACTCATTTTCAGTTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAGGTGAGTGGTGTCTGTGTGGTAAATTATAAGGACCGTGGCTAAAAGTGATCTTCCTTTTCTGGTATCTTCTAGCTTCTGAATATTGGTATTCTATGTTTCTTATGTAGGATCATATGCGTCGAGCTGGGGATGTTTGTTTCTCACAAGTTTTCCGTGAGGGGAGTGGTAAGATAATTTGCAACAGATACTAGTTTTATGCTCCTCTTAATTGTCCCTTTGTTTTGTTTGTATAAGGGTTTGTTTTTACTATGCCAAAGGAACTTGCCTATATCAGGACCTATATTGGTAAATTTGGTAAATTAAGAGTCAAGTCTCTATAACTACCCTTTCTCTTTTTTTCCTTTTCCGTCTTTCTGTTGGGTTTTCTTCTTTGAGAAGTGGTTGGAGAAGGATGGATATTTGATCCTTTTTTTTGAGAATAGCAATATATTTTCTGTGGATAACTTGAATTTCAATTGTTTTTATGGCTCTTTAACTTACTACCTTGAGCTGACTATCTTTCATAATGCAACTAGAAAGGCTTTCTCAAAGTAGAATCATTTCTTAAATCTTGTGTTGAATGTGACTGTGGTTCATCATTGGGTCTGCAAGTGTCTTTCCCAACCATATAACAGCTAATATTATCTTTCAGACCCAATCAAAACCAAATCTTGTTCTATGGCCCGTGAATAGATGATATTTTTGGGCTATTGTTGAGAACAAAATTGCTGTACGCTGCAGTAACGTGCATTAGTTATATATTTGATGACTTCTGGCTTAGTTTATAGTTTATAGTTTATACTATAATGTTTAGCCAACTTGGCTGGATAAAGTGACTGCGTCACTCAGTTTGGATGGGATAATGGGTGCTATTACCAATCTTGGTAAAATGGTCAGGTTTGATATATTATATATCCTTTGACTGAAGTTTGTCATTGTACATCATCATTCAAAACATAGTTCCATCCGTTTTAGTCAGAAAACTATTTTTCTCTTCTGGTGCCATAGTAATATAATAGAACAAGAAAGAATTACAGAAAGTTAAAAAGTATTAACATAAAAAAAAAGTAGATGAAAAATTTGTTGGGGTAACGCATAAAGTAAAAAAAATAGCAGGGAAAAATAAAATGGAGCAGAAAAAGAGAAAGGAGGGAAGTCTAAAAGAAATCCTTGGTTTGGGGTTGAGGAAAGACGGTAATGTTTCAACCCAGGTGTTGTAGAAGAGTAGATTAATTATTTTTTGGGGCATTTGTTGGAGAGGTAAGTGGGAGCTCTGTTGGACGATGAGGAGAAGATAGCAGGAAATAAGTGAGCTTATTTTTTCATCTTCCATGTTGAATAACATCCTGTGCTTACCTGTGTATTCCTCACTCTTTGAATAAATGTTGATGTGTGTCTGGATGTAATGCCTGGATTATGTCCCGCCTGGTGATAGTGGTCCTCCATAACAAGATAGTACTGCTATCTGGCTTATTGCATGTTACCAACCTTGAACAAGCCAAGATAATGAAGAGGCTAATCTAATAAGTGGGCTTAACAATGGATACACCAAGAATAGGAGTGGGTCTGGCTCTAATATCATACCATGTTAAGTGGAAAATTTGGGCCCAACTCAACTCCAAAAGGTACCTTAGTGCCAGATCATGCAATAAGATCTCTTTTTCCCTCTTTCCTTCATGTTTCAGATCATGCTAACTCAACTCCAAAAGGTAGCTTAGTGCAAGATCATGCAATAAGATCTCTTTTTACCTCTTTCCTTTAATGTTTCAGATTATGCAATAAGATAACTTTCCTTCTTTCCTTTAATTGTTTCAGTTAGCTTGCTATTAGGTTTTACATAGAAAATTGTCATCATTTTTGTCAGGACAAATATACTAGAGCCTTTATAATTAAGACAGTTAATAGACAGATGGCAAAGATGGTTCGACTCTAAAATAGGAATTTAATAGTTGATTTTACCCTATATAAATGGAATTGAAAATAGTGATTGCCACTCAAAATCTAGGGTCAGCTGAGATTTATTGGATATTTCAATTTTGTGGTTGTGACTAAAATGGCCCGAATGTATGGCTGAGCAGTTTAAAGACCTGTGGAAATAATGTGCTTCAGATTTTTTTTATTCTGTAATCAAATGTGGTGCTGCCTTATCTTTGAAATAATTTCTTGTGCTTCTACTCAATTTTTGTTGTGGCAAGCACCCTACTCTTGCTATGACTTGTGAATTTACTCTCCTTAAGTGATTCTTTTGTGGTGGATGGTGCGCTAACAATCAGTTTTGCTCTTCAGGGACCACTGGGATTGTGGATTATACCAACTATGACGACATGAAATATGCTGTAAGCTATCTCCTGTTTCTTATTCTGTATAATTATCCTCAATTTTTGTTCAAGATATTTGAAATATGTTTATGCTCGACTAACGAGTGTAATTAATTTTCCTTGTATGTAGATAAAAAAACTTGATGAATCTGAGTTTCGGAATGCTTTTTCTCGTTCAACAATTCGGGTATGATGTGATTATAACTCAAATGATATGATTGCAGGATGCTTAGTGCCTTTTCTTTTGTTAGCCTATACCATTGTCTTATGCTTCATAAAAATATTGCTTTGTCTTATGTAGGTGAAGGAACATGATTCTAGAAGCCGCAGCCGCAGCCGTTCTTACTCGAGAGGAAAGAGTGGTAGCCGTAGCCGCAGTCGAAGTTACAGTCGCAGCCGGAGCAGAAGGTATGTATTATGTAGTTTGCACGTTTTATAGCTTGTTACTTCACCTTTGAATGCTACTATGTATCTCATTGCTGCTCTTTCCTAGCAGCAAATCTCCTAAAGCTAAGTCGTCAAAGCGTACAAGATCTCGTTCTAGATCTGTCTCTTCTCAGCCCCGTTCTGGGTTAAAAGGACGCTCTTTGTCAAG</genome_strand>
        <mrna_strand>TGTTCTACAAG.......................................................................................TATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAG.................................................................................................TTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGG..........................................................................................................................................................................................................................................................................................................................................................................................GTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTCAGATCGTTATAATAGTGGCAATAATAGTGGCCATAATGGTGGTCGTAATAATCACAAATTTGGAGCGCCCAAACGTACCGAGTATCGAG.................................................................................TTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAG...........................................................................................................GATCATATGCGTCGAGCTGGGGATGTTTGTTTCTCACAAGTTTTCCGTGAGGGGAGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCACTGGGATTGTGGATTATACCAACTATGACGACATGAAATATGCT................................................................................................................ATAAAAAAACTTGATGAATCTGAGTTTCGGAATGCTTTTTCTCGTTCAACAATTCGG..................................................................................................................GTGAAGGAACATGATTCTAGAAGCCGCAGCCGCAGCCGTTCTTACTCGAGAGGAAAGAGTGGTAGCCGTAGCCGCAGTCGAAGTTACAGTCGCAGCCGGAGCAGAAG........................................................................................CAAATCTCCTAAAGCTAAGTCGTCAAAGCGTACAAGATCTCGTTCTAGATCTGTCTCTTCTCAGCCCCGTTCTGGGTTAAAAGGACGCTCTTTGTNCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727772" ref_strand="+" ref_description="SGN-E727772 [LA15CG09]">
      <seq>cgaattctccttctctaagcgctctgtgttttcatccttcatcaatcttctagtaaaggaacaatgagtcgttcaagtaggacgatttatgttggtaatcttcctggtgatattcgtgagcgagaagtggaggatctgttctacaagtatggcccgatagcacatattgatctgaaaattccaccaagacccccaggttatgcttttgttgagtttgaagaggcacgcgatgctgaggatgctattcgtgggcgcgatggctatgaatttgatgggcatcgtttgagggttgagcttgcacatggtgggcgtggtaactcatcgtcagatcgttataatagtggcaataatagtggccataatggtggtcgtaataatcacaaatttggagcgcccaaacgtaccgagtatcgagttttagttaccggattgccccattcagcatcctggcaggatctcaaggatcatatgcgtcgagctggggatgtttgtttctcacaagttttccgtgaggggagtgggaccactgggattgtggattataccaactatgacgacatgaaatatgctataaaaaaacttgatgaatctgagtttcggaatgctttttctcgttcaacaattcgggtgaaggaacatgattctagaagccgcagccgcagccgttcttactcgagaggaaagagtggtagccgtagccgcagtcgaagttacagtcgcagccggagcagaagcaaatctcctaaagctaagtcgtcaaagcgtacaagatctcgttctagatctgtctcttctcagccccgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38907" stop="33556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38609" g_stop="38552" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38551" i_stop="37767" i_length="785">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37766" g_stop="37678" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="147" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37677" i_stop="37591" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37590" g_stop="37525" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="213" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37524" i_stop="37428" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37427" g_stop="37353" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="288" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37352" i_stop="36975" i_length="378">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36974" g_stop="36848" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="415" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36847" i_stop="36767" i_length="81">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36766" g_stop="36720" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="462" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="36719" i_stop="36613" i_length="107">
            <donor d_prob="0.699" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36612" g_stop="36555" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="520" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="36554" i_stop="34455" i_length="2100">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="34454" g_stop="34405" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="570" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="34404" i_stop="34293" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="34292" g_stop="34236" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="627" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="34235" i_stop="34122" i_length="114">
            <donor d_prob="0.870" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="34121" g_stop="34015" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="734" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="34014" i_stop="33927" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.429" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="33926" g_stop="33856" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="735" r_stop="805" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E727772" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38609" e_stop="38552"/>
          <exon e_start="37766" e_stop="37678"/>
          <exon e_start="37590" e_stop="37525"/>
          <exon e_start="37427" e_stop="37353"/>
          <exon e_start="36974" e_stop="36848"/>
          <exon e_start="36766" e_stop="36720"/>
          <exon e_start="36612" e_stop="36555"/>
          <exon e_start="34454" e_stop="34405"/>
          <exon e_start="34292" e_stop="34236"/>
          <exon e_start="34121" e_stop="34015"/>
          <exon e_start="33926" e_stop="33856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTCTCCTTCTCTAAGCGCTCTGTGTTTTCATCCTTCATCAATCTTCTAGTAAAGGTACGTTCCTTCGGTCTTTGTTAATGGAGGTCCGTTTAATCGGCATCTATCAAACGAAATAGCTAACAAGATCTGTTTTTTAATTTTAGTTTCTTCCGTTTTGCTCATTTTACCCAGCGAAAAATGTATTTCAATTCACTTAAAACGTTGTTCAGAGGCGGATCTAGCATAGAATCAGTCTACATACAGGAAAAATAGCAATAAAGTATCTATACATAATTTGTGTATGTAATTGTGTATCCATTATTAGTGTGTTCTGTATGCAGGAAATGTTTTTTTTCGTCTTGGAAAATAACCGGGTTTCTTACTTAGTTGTGTTCGGTAGGCAAGCGAAAAATATTAGTACAATTATTTGTATGTAATCTAGACAAATACTCTTGAGTTGGGTGGTGGGGATGGTGGCTAAGAGTGTGGTGGTGAAGATGAGGTTGGTTGGAGGGTGGGGAGAACACAATCAATGTGGAATTTTATTTGTTGAACCTGTTTTCACTACTTCCATTGAGGAAGTCAAATTTTTTTATTTTGAAGCAACTTAATTTCCTAGAGAAGATGTTTTCCATAAATTTTACCAACCATGAGAAAACTTGGAAACATTTTTCTGGAAAATGGTTTCATTCGTATCTAACACACCCTATATGTATGTTTGTTACTTTGTTTATGTATTTGTGTGCGAATCAAGTTGATTGCTCAAGTTGTGTTTTTGTGACTTAAGTTCTTCATGAATTTTATCCATTTTTGTTTCTCAGGTGGGTTTTGATTGTATTTTTTTGTTGAATTATTTTTAGGAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAGGTACTTGTATAACACTTAGCTTCATACTTTAGTTGGATGTCATTTACTATGCTCATAAACTTAAATGTGTGTGGCGTATAATTGTAGTATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAGGTAAGTTTTGACTGCATTGGCTAAAATGAATTTCATTGGATATTTCCTTCTCAATTGTTAACCTATTTTGACATTGTTTTGTTGGAACTAAACACAGTTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGGGTTAGTAAAATCTTAACAGCATATAGGATACACACACATGAATCAATTGTATCCTCTGTTTACTCTGAGAAGTATGATTGACTTGCATTTTTGAATCAGGGTTTCCAATTCTTGTATTAATTGCATTTCGTTGACCCTAGCATTTCACCTAAACCATTATGTTTCTTTATTAAATGCTTGTCCCAAATTAGTTGGGATCAGTTTTATAAATTGTCTGTAACCATCCTACTTTATCCAGGCGTATTTTTCTTTTCAAGCTTAGTTTGTCTTTCAAGGCAAATTAACATGTCTAATACATATAAGACACCTAAATGCTAAATAGTTTTCTTTTTGAGGTGCTTAAGATCTAAGCCTACTGAAACTGTTACATGTATGCAGGTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTCAGATCGTTATAATAGTGGCAATAATAGTGGCCATAATGGTGGTCGTAATAATCACAAATTTGGAGCGCCCAAACGTACCGAGTATCGAGGCACGTATGTTATTAATGTGCACATAATTTTCTTTATTGCATTTCATGCCTTCTTGATCTAATTCACTTACTCATTTTCAGTTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAGGTGAGTGGTGTCTGTGTGGTAAATTATAAGGACCGTGGCTAAAAGTGATCTTCCTTTTCTGGTATCTTCTAGCTTCTGAATATTGGTATTCTATGTTTCTTATGTAGGATCATATGCGTCGAGCTGGGGATGTTTGTTTCTCACAAGTTTTCCGTGAGGGGAGTGGTAAGATAATTTGCAACAGATACTAGTTTTATGCTCCTCTTAATTGTCCCTTTGTTTTGTTTGTATAAGGGTTTGTTTTTACTATGCCAAAGGAACTTGCCTATATCAGGACCTATATTGGTAAATTTGGTAAATTAAGAGTCAAGTCTCTATAACTACCCTTTCTCTTTTTTTCCTTTTCCGTCTTTCTGTTGGGTTTTCTTCTTTGAGAAGTGGTTGGAGAAGGATGGATATTTGATCCTTTTTTTTGAGAATAGCAATATATTTTCTGTGGATAACTTGAATTTCAATTGTTTTTATGGCTCTTTAACTTACTACCTTGAGCTGACTATCTTTCATAATGCAACTAGAAAGGCTTTCTCAAAGTAGAATCATTTCTTAAATCTTGTGTTGAATGTGACTGTGGTTCATCATTGGGTCTGCAAGTGTCTTTCCCAACCATATAACAGCTAATATTATCTTTCAGACCCAATCAAAACCAAATCTTGTTCTATGGCCCGTGAATAGATGATATTTTTGGGCTATTGTTGAGAACAAAATTGCTGTACGCTGCAGTAACGTGCATTAGTTATATATTTGATGACTTCTGGCTTAGTTTATAGTTTATAGTTTATACTATAATGTTTAGCCAACTTGGCTGGATAAAGTGACTGCGTCACTCAGTTTGGATGGGATAATGGGTGCTATTACCAATCTTGGTAAAATGGTCAGGTTTGATATATTATATATCCTTTGACTGAAGTTTGTCATTGTACATCATCATTCAAAACATAGTTCCATCCGTTTTAGTCAGAAAACTATTTTTCTCTTCTGGTGCCATAGTAATATAATAGAACAAGAAAGAATTACAGAAAGTTAAAAAGTATTAACATAAAAAAAAAGTAGATGAAAAATTTGTTGGGGTAACGCATAAAGTAAAAAAAATAGCAGGGAAAAATAAAATGGAGCAGAAAAAGAGAAAGGAGGGAAGTCTAAAAGAAATCCTTGGTTTGGGGTTGAGGAAAGACGGTAATGTTTCAACCCAGGTGTTGTAGAAGAGTAGATTAATTATTTTTTGGGGCATTTGTTGGAGAGGTAAGTGGGAGCTCTGTTGGACGATGAGGAGAAGATAGCAGGAAATAAGTGAGCTTATTTTTTCATCTTCCATGTTGAATAACATCCTGTGCTTACCTGTGTATTCCTCACTCTTTGAATAAATGTTGATGTGTGTCTGGATGTAATGCCTGGATTATGTCCCGCCTGGTGATAGTGGTCCTCCATAACAAGATAGTACTGCTATCTGGCTTATTGCATGTTACCAACCTTGAACAAGCCAAGATAATGAAGAGGCTAATCTAATAAGTGGGCTTAACAATGGATACACCAAGAATAGGAGTGGGTCTGGCTCTAATATCATACCATGTTAAGTGGAAAATTTGGGCCCAACTCAACTCCAAAAGGTACCTTAGTGCCAGATCATGCAATAAGATCTCTTTTTCCCTCTTTCCTTCATGTTTCAGATCATGCTAACTCAACTCCAAAAGGTAGCTTAGTGCAAGATCATGCAATAAGATCTCTTTTTACCTCTTTCCTTTAATGTTTCAGATTATGCAATAAGATAACTTTCCTTCTTTCCTTTAATTGTTTCAGTTAGCTTGCTATTAGGTTTTACATAGAAAATTGTCATCATTTTTGTCAGGACAAATATACTAGAGCCTTTATAATTAAGACAGTTAATAGACAGATGGCAAAGATGGTTCGACTCTAAAATAGGAATTTAATAGTTGATTTTACCCTATATAAATGGAATTGAAAATAGTGATTGCCACTCAAAATCTAGGGTCAGCTGAGATTTATTGGATATTTCAATTTTGTGGTTGTGACTAAAATGGCCCGAATGTATGGCTGAGCAGTTTAAAGACCTGTGGAAATAATGTGCTTCAGATTTTTTTTATTCTGTAATCAAATGTGGTGCTGCCTTATCTTTGAAATAATTTCTTGTGCTTCTACTCAATTTTTGTTGTGGCAAGCACCCTACTCTTGCTATGACTTGTGAATTTACTCTCCTTAAGTGATTCTTTTGTGGTGGATGGTGCGCTAACAATCAGTTTTGCTCTTCAGGGACCACTGGGATTGTGGATTATACCAACTATGACGACATGAAATATGCTGTAAGCTATCTCCTGTTTCTTATTCTGTATAATTATCCTCAATTTTTGTTCAAGATATTTGAAATATGTTTATGCTCGACTAACGAGTGTAATTAATTTTCCTTGTATGTAGATAAAAAAACTTGATGAATCTGAGTTTCGGAATGCTTTTTCTCGTTCAACAATTCGGGTATGATGTGATTATAACTCAAATGATATGATTGCAGGATGCTTAGTGCCTTTTCTTTTGTTAGCCTATACCATTGTCTTATGCTTCATAAAAATATTGCTTTGTCTTATGTAGGTGAAGGAACATGATTCTAGAAGCCGCAGCCGCAGCCGTTCTTACTCGAGAGGAAAGAGTGGTAGCCGTAGCCGCAGTCGAAGTTACAGTCGCAGCCGGAGCAGAAGGTATGTATTATGTAGTTTGCACGTTTTATAGCTTGTTACTTCACCTTTGAATGCTACTATGTATCTCATTGCTGCTCTTTCCTAGCAGCAAATCTCCTAAAGCTAAGTCGTCAAAGCGTACAAGATCTCGTTCTAGATCTGTCTCTTCTCAGCCCCGTT</genome_strand>
        <mrna_strand>CGAATTCTCCTTCTCTAAGCGCTCTGTGTTTTCATCCTTCATCAATCTTCTAGTAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAG.......................................................................................TATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAG.................................................................................................TTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGG..........................................................................................................................................................................................................................................................................................................................................................................................GTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTCAGATCGTTATAATAGTGGCAATAATAGTGGCCATAATGGTGGTCGTAATAATCACAAATTTGGAGCGCCCAAACGTACCGAGTATCGAG.................................................................................TTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAG...........................................................................................................GATCATATGCGTCGAGCTGGGGATGTTTGTTTCTCACAAGTTTTCCGTGAGGGGAGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCACTGGGATTGTGGATTATACCAACTATGACGACATGAAATATGCT................................................................................................................ATAAAAAAACTTGATGAATCTGAGTTTCGGAATGCTTTTTCTCGTTCAACAATTCGG..................................................................................................................GTGAAGGAACATGATTCTAGAAGCCGCAGCCGCAGCCGTTCTTACTCGAGAGGAAAGAGTGGTAGCCGTAGCCGCAGTCGAAGTTACAGTCGCAGCCGGAGCAGAAG........................................................................................CAAATCTCCTAAAGCTAAGTCGTCAAAGCGTACAAGATCTCGTTCTAGATCTGTCTCTTCTCAGCCCCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449363" ref_strand="+" ref_description="SGN-E449363 [cSTS-6-A24]">
      <seq>cttctagtaaaggaacaatgagtcgttcaagtaggacgatttatgttggtaatcttcctggtgatattcgtgagcgagaagtggaggatctgttctacaagtatggcccgatagcacatattgatctgaaaattccaccgagacccccgggttatgcttttgttgagtttgaagaggcacgcgatgctgaggatgctattcgtgggcgcgatggctatgattttgatgggcatcgtttgagggttgaacttgcacatggtgggcgtggtaactcatcgtcaaatgatcgttataatagtggcaataatagtggccataatggtggtggtcgtaataatcacaaatttggagcacccaaacgtactgagtatcgagttttagttaccggattgccccattcagcatcctggcaggatctcaaggatcatatgcgtcgagctggggatgtttgtttctcacaagttttccgtgaggggagtgggaccactggaattgtggattataccaactatgacgatatgaaatatgctataaaaaaacttgatgaatctgagtttcggaatgctttttcccgttcaacaattcgggtgaaagaacatgattctagaagccgcagccgcagccgttcttactcgagaggaaagagtggtagccgtagccgcagttacagtcgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="117795" stop="33744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38563" g_stop="38552" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38551" i_stop="37767" i_length="785">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37766" g_stop="37678" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="101" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37677" i_stop="37591" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37590" g_stop="37525" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="167" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37524" i_stop="37428" i_length="97">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37427" g_stop="37353" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="242" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37352" i_stop="36975" i_length="378">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36974" g_stop="36848" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="375" r_length="133" r_score="0.882"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36847" i_stop="36767" i_length="81">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36766" g_stop="36720" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="422" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="36719" i_stop="36613" i_length="107">
            <donor d_prob="0.699" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36612" g_stop="36555" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="480" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="36554" i_stop="34455" i_length="2100">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="34454" g_stop="34405" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="530" r_length="50" r_score="0.960"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="34404" i_stop="34293" i_length="112">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="34292" g_stop="34236" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="587" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="34235" i_stop="34122" i_length="114">
            <donor d_prob="0.870" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="34121" g_stop="34034" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="675" r_length="88" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E449363" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E449363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38563" e_stop="38552"/>
          <exon e_start="37766" e_stop="37678"/>
          <exon e_start="37590" e_stop="37525"/>
          <exon e_start="37427" e_stop="37353"/>
          <exon e_start="36974" e_stop="36848"/>
          <exon e_start="36766" e_stop="36720"/>
          <exon e_start="36612" e_stop="36555"/>
          <exon e_start="34454" e_stop="34405"/>
          <exon e_start="34292" e_stop="34236"/>
          <exon e_start="34121" e_stop="34034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTAGTAAAGGTACGTTCCTTCGGTCTTTGTTAATGGAGGTCCGTTTAATCGGCATCTATCAAACGAAATAGCTAACAAGATCTGTTTTTTAATTTTAGTTTCTTCCGTTTTGCTCATTTTACCCAGCGAAAAATGTATTTCAATTCACTTAAAACGTTGTTCAGAGGCGGATCTAGCATAGAATCAGTCTACATACAGGAAAAATAGCAATAAAGTATCTATACATAATTTGTGTATGTAATTGTGTATCCATTATTAGTGTGTTCTGTATGCAGGAAATGTTTTTTTTCGTCTTGGAAAATAACCGGGTTTCTTACTTAGTTGTGTTCGGTAGGCAAGCGAAAAATATTAGTACAATTATTTGTATGTAATCTAGACAAATACTCTTGAGTTGGGTGGTGGGGATGGTGGCTAAGAGTGTGGTGGTGAAGATGAGGTTGGTTGGAGGGTGGGGAGAACACAATCAATGTGGAATTTTATTTGTTGAACCTGTTTTCACTACTTCCATTGAGGAAGTCAAATTTTTTTATTTTGAAGCAACTTAATTTCCTAGAGAAGATGTTTTCCATAAATTTTACCAACCATGAGAAAACTTGGAAACATTTTTCTGGAAAATGGTTTCATTCGTATCTAACACACCCTATATGTATGTTTGTTACTTTGTTTATGTATTTGTGTGCGAATCAAGTTGATTGCTCAAGTTGTGTTTTTGTGACTTAAGTTCTTCATGAATTTTATCCATTTTTGTTTCTCAGGTGGGTTTTGATTGTATTTTTTTGTTGAATTATTTTTAGGAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAGGTACTTGTATAACACTTAGCTTCATACTTTAGTTGGATGTCATTTACTATGCTCATAAACTTAAATGTGTGTGGCGTATAATTGTAGTATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAGGTAAGTTTTGACTGCATTGGCTAAAATGAATTTCATTGGATATTTCCTTCTCAATTGTTAACCTATTTTGACATTGTTTTGTTGGAACTAAACACAGTTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGGGTTAGTAAAATCTTAACAGCATATAGGATACACACACATGAATCAATTGTATCCTCTGTTTACTCTGAGAAGTATGATTGACTTGCATTTTTGAATCAGGGTTTCCAATTCTTGTATTAATTGCATTTCGTTGACCCTAGCATTTCACCTAAACCATTATGTTTCTTTATTAAATGCTTGTCCCAAATTAGTTGGGATCAGTTTTATAAATTGTCTGTAACCATCCTACTTTATCCAGGCGTATTTTTCTTTTCAAGCTTAGTTTGTCTTTCAAGGCAAATTAACATGTCTAATACATATAAGACACCTAAATGCTAAATAGTTTTCTTTTTGAGGTGCTTAAGATCTAAGCCTACTGAAACTGTTACATGTATGCAGGTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTC--A-GATCGTTATAATAGTGGCAATAATAGTGGCCATAA---TGGTGGTCGTAATAATCACAAATTTGGAGCGCCCAAACGTACCGAGTATCGAGGCACGTATGTTATTAATGTGCACATAATTTTCTTTATTGCATTTCATGCCTTCTTGATCTAATTCACTTACTCATTTTCAGTTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAGGTGAGTGGTGTCTGTGTGGTAAATTATAAGGACCGTGGCTAAAAGTGATCTTCCTTTTCTGGTATCTTCTAGCTTCTGAATATTGGTATTCTATGTTTCTTATGTAGGATCATATGCGTCGAGCTGGGGATGTTTGTTTCTCACAAGTTTTCCGTGAGGGGAGTGGTAAGATAATTTGCAACAGATACTAGTTTTATGCTCCTCTTAATTGTCCCTTTGTTTTGTTTGTATAAGGGTTTGTTTTTACTATGCCAAAGGAACTTGCCTATATCAGGACCTATATTGGTAAATTTGGTAAATTAAGAGTCAAGTCTCTATAACTACCCTTTCTCTTTTTTTCCTTTTCCGTCTTTCTGTTGGGTTTTCTTCTTTGAGAAGTGGTTGGAGAAGGATGGATATTTGATCCTTTTTTTTGAGAATAGCAATATATTTTCTGTGGATAACTTGAATTTCAATTGTTTTTATGGCTCTTTAACTTACTACCTTGAGCTGACTATCTTTCATAATGCAACTAGAAAGGCTTTCTCAAAGTAGAATCATTTCTTAAATCTTGTGTTGAATGTGACTGTGGTTCATCATTGGGTCTGCAAGTGTCTTTCCCAACCATATAACAGCTAATATTATCTTTCAGACCCAATCAAAACCAAATCTTGTTCTATGGCCCGTGAATAGATGATATTTTTGGGCTATTGTTGAGAACAAAATTGCTGTACGCTGCAGTAACGTGCATTAGTTATATATTTGATGACTTCTGGCTTAGTTTATAGTTTATAGTTTATACTATAATGTTTAGCCAACTTGGCTGGATAAAGTGACTGCGTCACTCAGTTTGGATGGGATAATGGGTGCTATTACCAATCTTGGTAAAATGGTCAGGTTTGATATATTATATATCCTTTGACTGAAGTTTGTCATTGTACATCATCATTCAAAACATAGTTCCATCCGTTTTAGTCAGAAAACTATTTTTCTCTTCTGGTGCCATAGTAATATAATAGAACAAGAAAGAATTACAGAAAGTTAAAAAGTATTAACATAAAAAAAAAGTAGATGAAAAATTTGTTGGGGTAACGCATAAAGTAAAAAAAATAGCAGGGAAAAATAAAATGGAGCAGAAAAAGAGAAAGGAGGGAAGTCTAAAAGAAATCCTTGGTTTGGGGTTGAGGAAAGACGGTAATGTTTCAACCCAGGTGTTGTAGAAGAGTAGATTAATTATTTTTTGGGGCATTTGTTGGAGAGGTAAGTGGGAGCTCTGTTGGACGATGAGGAGAAGATAGCAGGAAATAAGTGAGCTTATTTTTTCATCTTCCATGTTGAATAACATCCTGTGCTTACCTGTGTATTCCTCACTCTTTGAATAAATGTTGATGTGTGTCTGGATGTAATGCCTGGATTATGTCCCGCCTGGTGATAGTGGTCCTCCATAACAAGATAGTACTGCTATCTGGCTTATTGCATGTTACCAACCTTGAACAAGCCAAGATAATGAAGAGGCTAATCTAATAAGTGGGCTTAACAATGGATACACCAAGAATAGGAGTGGGTCTGGCTCTAATATCATACCATGTTAAGTGGAAAATTTGGGCCCAACTCAACTCCAAAAGGTACCTTAGTGCCAGATCATGCAATAAGATCTCTTTTTCCCTCTTTCCTTCATGTTTCAGATCATGCTAACTCAACTCCAAAAGGTAGCTTAGTGCAAGATCATGCAATAAGATCTCTTTTTACCTCTTTCCTTTAATGTTTCAGATTATGCAATAAGATAACTTTCCTTCTTTCCTTTAATTGTTTCAGTTAGCTTGCTATTAGGTTTTACATAGAAAATTGTCATCATTTTTGTCAGGACAAATATACTAGAGCCTTTATAATTAAGACAGTTAATAGACAGATGGCAAAGATGGTTCGACTCTAAAATAGGAATTTAATAGTTGATTTTACCCTATATAAATGGAATTGAAAATAGTGATTGCCACTCAAAATCTAGGGTCAGCTGAGATTTATTGGATATTTCAATTTTGTGGTTGTGACTAAAATGGCCCGAATGTATGGCTGAGCAGTTTAAAGACCTGTGGAAATAATGTGCTTCAGATTTTTTTTATTCTGTAATCAAATGTGGTGCTGCCTTATCTTTGAAATAATTTCTTGTGCTTCTACTCAATTTTTGTTGTGGCAAGCACCCTACTCTTGCTATGACTTGTGAATTTACTCTCCTTAAGTGATTCTTTTGTGGTGGATGGTGCGCTAACAATCAGTTTTGCTCTTCAGGGACCACTGGGATTGTGGATTATACCAACTATGACGACATGAAATATGCTGTAAGCTATCTCCTGTTTCTTATTCTGTATAATTATCCTCAATTTTTGTTCAAGATATTTGAAATATGTTTATGCTCGACTAACGAGTGTAATTAATTTTCCTTGTATGTAGATAAAAAAACTTGATGAATCTGAGTTTCGGAATGCTTTTTCTCGTTCAACAATTCGGGTATGATGTGATTATAACTCAAATGATATGATTGCAGGATGCTTAGTGCCTTTTCTTTTGTTAGCCTATACCATTGTCTTATGCTTCATAAAAATATTGCTTTGTCTTATGTAGGTGAAGGAACATGATTCTAGAAGCCGCAGCCGCAGCCGTTCTTACTCGAGAGGAAAGAGTGGTAGCCGTAGCCGCAGTCGAAGTTACA</genome_strand>
        <mrna_strand>CTTCTAGTAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAG.......................................................................................TATGGCCCGATAGCACATATTGATCTGAAAATTCCACCGAGACCCCCGGGTTATGCTTTTGTTGAG.................................................................................................TTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGATTTTGATGGGCATCGTTTGAGG..........................................................................................................................................................................................................................................................................................................................................................................................GTTGAACTTGCACATGGTGGGCGTGGTAACTCATCGTCAAATGATCGTTATAATAGTGGCAATAATAGTGGCCATAATGGTGGTGGTCGTAATAATCACAAATTTGGAGCACCCAAACGTACTGAGTATCGAG.................................................................................TTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAG...........................................................................................................GATCATATGCGTCGAGCTGGGGATGTTTGTTTCTCACAAGTTTTCCGTGAGGGGAGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCACTGGAATTGTGGATTATACCAACTATGACGATATGAAATATGCT................................................................................................................ATAAAAAAACTTGATGAATCTGAGTTTCGGAATGCTTTTTCCCGTTCAACAATTCGG..................................................................................................................GTGAAAGAACATGATTCTAGAAGCCGCAGCCGCAGCCGTTCTTACTCGAGAGGAAAGAGTGGTAGCCGTAGCCGCAGTTACAGTCGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316156" ref_strand="+" ref_description="SGN-E316156 [cTOA-23-A23]">
      <seq>ccttctctaagcgctctgtgttttcatccttcatcaatcttctagtaaaggaacaatgagtcgttcaagtaggacgatttatgttggtaatcttcctggtgatattcgtgagcgagaagtggaggatctgttctacaagtatggcccgatagcacatattgatctgaaaattccaccaagacccccaggttatgcttttgttgagtttgaagaggcacgcgatgctgaggatgctattcgtgggcgcgatggctatgaatttgatgggcatcgtttgagggttgagcttgcacatggtgggcgtggtaactcatcgtcagatcgttataatagtggcaataatagtggccataatggtggtcgtaataatcacaaatttggagcgcccaaacgtaccgagtatcgagttttagttaccggattgccccattcagcatcctggcaggatctcaaggatcatatgcgtcgagctggggatgtttgtttctcacaagttttccgtgaggggagtgggaccactgggattgtggattataccaactatgacgacatgaaatatgctataaaaaaacttgatgaatctgagtttcggaatgctttttctcgttcaacaattcgggtgaaggaacatgattctagaagccgcagccgcagccgttcttactcgagaggaaagagtggtagccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38901" stop="33753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38601" g_stop="38552" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38551" i_stop="37767" i_length="785">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37766" g_stop="37678" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="139" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37677" i_stop="37591" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37590" g_stop="37525" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="205" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37524" i_stop="37428" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37427" g_stop="37353" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="280" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37352" i_stop="36975" i_length="378">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36974" g_stop="36848" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="407" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36847" i_stop="36767" i_length="81">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36766" g_stop="36720" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="454" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="36719" i_stop="36613" i_length="107">
            <donor d_prob="0.699" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36612" g_stop="36555" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="512" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="36554" i_stop="34455" i_length="2100">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="34454" g_stop="34405" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="562" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="34404" i_stop="34293" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="34292" g_stop="34236" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="619" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="34235" i_stop="34122" i_length="114">
            <donor d_prob="0.870" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="34121" g_stop="34053" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="688" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E316156" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38601" e_stop="38552"/>
          <exon e_start="37766" e_stop="37678"/>
          <exon e_start="37590" e_stop="37525"/>
          <exon e_start="37427" e_stop="37353"/>
          <exon e_start="36974" e_stop="36848"/>
          <exon e_start="36766" e_stop="36720"/>
          <exon e_start="36612" e_stop="36555"/>
          <exon e_start="34454" e_stop="34405"/>
          <exon e_start="34292" e_stop="34236"/>
          <exon e_start="34121" e_stop="34053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCTCTAAGCGCTCTGTGTTTTCATCCTTCATCAATCTTCTAGTAAAGGTACGTTCCTTCGGTCTTTGTTAATGGAGGTCCGTTTAATCGGCATCTATCAAACGAAATAGCTAACAAGATCTGTTTTTTAATTTTAGTTTCTTCCGTTTTGCTCATTTTACCCAGCGAAAAATGTATTTCAATTCACTTAAAACGTTGTTCAGAGGCGGATCTAGCATAGAATCAGTCTACATACAGGAAAAATAGCAATAAAGTATCTATACATAATTTGTGTATGTAATTGTGTATCCATTATTAGTGTGTTCTGTATGCAGGAAATGTTTTTTTTCGTCTTGGAAAATAACCGGGTTTCTTACTTAGTTGTGTTCGGTAGGCAAGCGAAAAATATTAGTACAATTATTTGTATGTAATCTAGACAAATACTCTTGAGTTGGGTGGTGGGGATGGTGGCTAAGAGTGTGGTGGTGAAGATGAGGTTGGTTGGAGGGTGGGGAGAACACAATCAATGTGGAATTTTATTTGTTGAACCTGTTTTCACTACTTCCATTGAGGAAGTCAAATTTTTTTATTTTGAAGCAACTTAATTTCCTAGAGAAGATGTTTTCCATAAATTTTACCAACCATGAGAAAACTTGGAAACATTTTTCTGGAAAATGGTTTCATTCGTATCTAACACACCCTATATGTATGTTTGTTACTTTGTTTATGTATTTGTGTGCGAATCAAGTTGATTGCTCAAGTTGTGTTTTTGTGACTTAAGTTCTTCATGAATTTTATCCATTTTTGTTTCTCAGGTGGGTTTTGATTGTATTTTTTTGTTGAATTATTTTTAGGAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAGGTACTTGTATAACACTTAGCTTCATACTTTAGTTGGATGTCATTTACTATGCTCATAAACTTAAATGTGTGTGGCGTATAATTGTAGTATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAGGTAAGTTTTGACTGCATTGGCTAAAATGAATTTCATTGGATATTTCCTTCTCAATTGTTAACCTATTTTGACATTGTTTTGTTGGAACTAAACACAGTTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGGGTTAGTAAAATCTTAACAGCATATAGGATACACACACATGAATCAATTGTATCCTCTGTTTACTCTGAGAAGTATGATTGACTTGCATTTTTGAATCAGGGTTTCCAATTCTTGTATTAATTGCATTTCGTTGACCCTAGCATTTCACCTAAACCATTATGTTTCTTTATTAAATGCTTGTCCCAAATTAGTTGGGATCAGTTTTATAAATTGTCTGTAACCATCCTACTTTATCCAGGCGTATTTTTCTTTTCAAGCTTAGTTTGTCTTTCAAGGCAAATTAACATGTCTAATACATATAAGACACCTAAATGCTAAATAGTTTTCTTTTTGAGGTGCTTAAGATCTAAGCCTACTGAAACTGTTACATGTATGCAGGTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTCAGATCGTTATAATAGTGGCAATAATAGTGGCCATAATGGTGGTCGTAATAATCACAAATTTGGAGCGCCCAAACGTACCGAGTATCGAGGCACGTATGTTATTAATGTGCACATAATTTTCTTTATTGCATTTCATGCCTTCTTGATCTAATTCACTTACTCATTTTCAGTTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAGGTGAGTGGTGTCTGTGTGGTAAATTATAAGGACCGTGGCTAAAAGTGATCTTCCTTTTCTGGTATCTTCTAGCTTCTGAATATTGGTATTCTATGTTTCTTATGTAGGATCATATGCGTCGAGCTGGGGATGTTTGTTTCTCACAAGTTTTCCGTGAGGGGAGTGGTAAGATAATTTGCAACAGATACTAGTTTTATGCTCCTCTTAATTGTCCCTTTGTTTTGTTTGTATAAGGGTTTGTTTTTACTATGCCAAAGGAACTTGCCTATATCAGGACCTATATTGGTAAATTTGGTAAATTAAGAGTCAAGTCTCTATAACTACCCTTTCTCTTTTTTTCCTTTTCCGTCTTTCTGTTGGGTTTTCTTCTTTGAGAAGTGGTTGGAGAAGGATGGATATTTGATCCTTTTTTTTGAGAATAGCAATATATTTTCTGTGGATAACTTGAATTTCAATTGTTTTTATGGCTCTTTAACTTACTACCTTGAGCTGACTATCTTTCATAATGCAACTAGAAAGGCTTTCTCAAAGTAGAATCATTTCTTAAATCTTGTGTTGAATGTGACTGTGGTTCATCATTGGGTCTGCAAGTGTCTTTCCCAACCATATAACAGCTAATATTATCTTTCAGACCCAATCAAAACCAAATCTTGTTCTATGGCCCGTGAATAGATGATATTTTTGGGCTATTGTTGAGAACAAAATTGCTGTACGCTGCAGTAACGTGCATTAGTTATATATTTGATGACTTCTGGCTTAGTTTATAGTTTATAGTTTATACTATAATGTTTAGCCAACTTGGCTGGATAAAGTGACTGCGTCACTCAGTTTGGATGGGATAATGGGTGCTATTACCAATCTTGGTAAAATGGTCAGGTTTGATATATTATATATCCTTTGACTGAAGTTTGTCATTGTACATCATCATTCAAAACATAGTTCCATCCGTTTTAGTCAGAAAACTATTTTTCTCTTCTGGTGCCATAGTAATATAATAGAACAAGAAAGAATTACAGAAAGTTAAAAAGTATTAACATAAAAAAAAAGTAGATGAAAAATTTGTTGGGGTAACGCATAAAGTAAAAAAAATAGCAGGGAAAAATAAAATGGAGCAGAAAAAGAGAAAGGAGGGAAGTCTAAAAGAAATCCTTGGTTTGGGGTTGAGGAAAGACGGTAATGTTTCAACCCAGGTGTTGTAGAAGAGTAGATTAATTATTTTTTGGGGCATTTGTTGGAGAGGTAAGTGGGAGCTCTGTTGGACGATGAGGAGAAGATAGCAGGAAATAAGTGAGCTTATTTTTTCATCTTCCATGTTGAATAACATCCTGTGCTTACCTGTGTATTCCTCACTCTTTGAATAAATGTTGATGTGTGTCTGGATGTAATGCCTGGATTATGTCCCGCCTGGTGATAGTGGTCCTCCATAACAAGATAGTACTGCTATCTGGCTTATTGCATGTTACCAACCTTGAACAAGCCAAGATAATGAAGAGGCTAATCTAATAAGTGGGCTTAACAATGGATACACCAAGAATAGGAGTGGGTCTGGCTCTAATATCATACCATGTTAAGTGGAAAATTTGGGCCCAACTCAACTCCAAAAGGTACCTTAGTGCCAGATCATGCAATAAGATCTCTTTTTCCCTCTTTCCTTCATGTTTCAGATCATGCTAACTCAACTCCAAAAGGTAGCTTAGTGCAAGATCATGCAATAAGATCTCTTTTTACCTCTTTCCTTTAATGTTTCAGATTATGCAATAAGATAACTTTCCTTCTTTCCTTTAATTGTTTCAGTTAGCTTGCTATTAGGTTTTACATAGAAAATTGTCATCATTTTTGTCAGGACAAATATACTAGAGCCTTTATAATTAAGACAGTTAATAGACAGATGGCAAAGATGGTTCGACTCTAAAATAGGAATTTAATAGTTGATTTTACCCTATATAAATGGAATTGAAAATAGTGATTGCCACTCAAAATCTAGGGTCAGCTGAGATTTATTGGATATTTCAATTTTGTGGTTGTGACTAAAATGGCCCGAATGTATGGCTGAGCAGTTTAAAGACCTGTGGAAATAATGTGCTTCAGATTTTTTTTATTCTGTAATCAAATGTGGTGCTGCCTTATCTTTGAAATAATTTCTTGTGCTTCTACTCAATTTTTGTTGTGGCAAGCACCCTACTCTTGCTATGACTTGTGAATTTACTCTCCTTAAGTGATTCTTTTGTGGTGGATGGTGCGCTAACAATCAGTTTTGCTCTTCAGGGACCACTGGGATTGTGGATTATACCAACTATGACGACATGAAATATGCTGTAAGCTATCTCCTGTTTCTTATTCTGTATAATTATCCTCAATTTTTGTTCAAGATATTTGAAATATGTTTATGCTCGACTAACGAGTGTAATTAATTTTCCTTGTATGTAGATAAAAAAACTTGATGAATCTGAGTTTCGGAATGCTTTTTCTCGTTCAACAATTCGGGTATGATGTGATTATAACTCAAATGATATGATTGCAGGATGCTTAGTGCCTTTTCTTTTGTTAGCCTATACCATTGTCTTATGCTTCATAAAAATATTGCTTTGTCTTATGTAGGTGAAGGAACATGATTCTAGAAGCCGCAGCCGCAGCCGTTCTTACTCGAGAGGAAAGAGTGGTAGCCGT</genome_strand>
        <mrna_strand>CCTTCTCTAAGCGCTCTGTGTTTTCATCCTTCATCAATCTTCTAGTAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAG.......................................................................................TATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAG.................................................................................................TTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGG..........................................................................................................................................................................................................................................................................................................................................................................................GTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTCAGATCGTTATAATAGTGGCAATAATAGTGGCCATAATGGTGGTCGTAATAATCACAAATTTGGAGCGCCCAAACGTACCGAGTATCGAG.................................................................................TTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAG...........................................................................................................GATCATATGCGTCGAGCTGGGGATGTTTGTTTCTCACAAGTTTTCCGTGAGGGGAGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCACTGGGATTGTGGATTATACCAACTATGACGACATGAAATATGCT................................................................................................................ATAAAAAAACTTGATGAATCTGAGTTTCGGAATGCTTTTTCTCGTTCAACAATTCGG..................................................................................................................GTGAAGGAACATGATTCTAGAAGCCGCAGCCGCAGCCGTTCTTACTCGAGAGGAAAGAGTGGTAGCCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558101" ref_strand="+" ref_description="SGN-E558101 [17004]">
      <seq>cttcatcaatcttctgttaaggaacaatgagtcgttcaagtaggacgatttatgttggtaatcttcctggtgatattcgtgagcgagaagtggaggatctgttctacaagtatggcccgatagcacatattgatctgaaaattccaccaagacccccgggttatgcttttgttgagtttgaagaggcacgcgatgctgaggatgctattcgtgggcgcgatggctatgattttgatgggcatcgtttgagggttgaacttgcacatggtgggcgtggtaactcatcgtcaaatgatcgttataatagtggcaataatagtggccataatggtggtggtcggaataatcacaaatttggagcacccaaacgtactgagtatcgcgttttagttaccggattgccccattcagcatcctggcaggatctcaaggatcatatgcgtcgagctggggatgtttgtttctcacaagttttccgtgaggggagtgggaccactgggattgtggattataccaactatgacgacatgaaatatgctataaaaaaaacttggatgaatctgagttccggaatgctttttcccgttccaacaattcgggtgaaagaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="117803" stop="34101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38573" g_stop="38552" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38551" i_stop="37767" i_length="785">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37766" g_stop="37678" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="110" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37677" i_stop="37591" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37590" g_stop="37525" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="176" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37524" i_stop="37428" i_length="97">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37427" g_stop="37353" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="251" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37352" i_stop="36975" i_length="378">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36974" g_stop="36848" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="384" r_length="133" r_score="0.866"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36847" i_stop="36767" i_length="81">
            <donor d_prob="0.977" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36766" g_stop="36720" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="431" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="36719" i_stop="36613" i_length="107">
            <donor d_prob="0.699" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36612" g_stop="36555" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="489" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="36554" i_stop="34455" i_length="2100">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="34454" g_stop="34405" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="539" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="34404" i_stop="34293" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="34292" g_stop="34236" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="599" r_length="60" r_score="0.860"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="34235" i_stop="34122" i_length="114">
            <donor d_prob="0.870" d_score="0.88"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="34121" g_stop="34115" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="606" r_length="7" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E558101" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E558101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38573" e_stop="38552"/>
          <exon e_start="37766" e_stop="37678"/>
          <exon e_start="37590" e_stop="37525"/>
          <exon e_start="37427" e_stop="37353"/>
          <exon e_start="36974" e_stop="36848"/>
          <exon e_start="36766" e_stop="36720"/>
          <exon e_start="36612" e_stop="36555"/>
          <exon e_start="34454" e_stop="34405"/>
          <exon e_start="34292" e_stop="34236"/>
          <exon e_start="34121" e_stop="34115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATCAATCTTCTAGTAAAGGTACGTTCCTTCGGTCTTTGTTAATGGAGGTCCGTTTAATCGGCATCTATCAAACGAAATAGCTAACAAGATCTGTTTTTTAATTTTAGTTTCTTCCGTTTTGCTCATTTTACCCAGCGAAAAATGTATTTCAATTCACTTAAAACGTTGTTCAGAGGCGGATCTAGCATAGAATCAGTCTACATACAGGAAAAATAGCAATAAAGTATCTATACATAATTTGTGTATGTAATTGTGTATCCATTATTAGTGTGTTCTGTATGCAGGAAATGTTTTTTTTCGTCTTGGAAAATAACCGGGTTTCTTACTTAGTTGTGTTCGGTAGGCAAGCGAAAAATATTAGTACAATTATTTGTATGTAATCTAGACAAATACTCTTGAGTTGGGTGGTGGGGATGGTGGCTAAGAGTGTGGTGGTGAAGATGAGGTTGGTTGGAGGGTGGGGAGAACACAATCAATGTGGAATTTTATTTGTTGAACCTGTTTTCACTACTTCCATTGAGGAAGTCAAATTTTTTTATTTTGAAGCAACTTAATTTCCTAGAGAAGATGTTTTCCATAAATTTTACCAACCATGAGAAAACTTGGAAACATTTTTCTGGAAAATGGTTTCATTCGTATCTAACACACCCTATATGTATGTTTGTTACTTTGTTTATGTATTTGTGTGCGAATCAAGTTGATTGCTCAAGTTGTGTTTTTGTGACTTAAGTTCTTCATGAATTTTATCCATTTTTGTTTCTCAGGTGGGTTTTGATTGTATTTTTTTGTTGAATTATTTTTAGGAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAGGTACTTGTATAACACTTAGCTTCATACTTTAGTTGGATGTCATTTACTATGCTCATAAACTTAAATGTGTGTGGCGTATAATTGTAGTATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAGGTAAGTTTTGACTGCATTGGCTAAAATGAATTTCATTGGATATTTCCTTCTCAATTGTTAACCTATTTTGACATTGTTTTGTTGGAACTAAACACAGTTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGGGTTAGTAAAATCTTAACAGCATATAGGATACACACACATGAATCAATTGTATCCTCTGTTTACTCTGAGAAGTATGATTGACTTGCATTTTTGAATCAGGGTTTCCAATTCTTGTATTAATTGCATTTCGTTGACCCTAGCATTTCACCTAAACCATTATGTTTCTTTATTAAATGCTTGTCCCAAATTAGTTGGGATCAGTTTTATAAATTGTCTGTAACCATCCTACTTTATCCAGGCGTATTTTTCTTTTCAAGCTTAGTTTGTCTTTCAAGGCAAATTAACATGTCTAATACATATAAGACACCTAAATGCTAAATAGTTTTCTTTTTGAGGTGCTTAAGATCTAAGCCTACTGAAACTGTTACATGTATGCAGGTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTC--A-GATCGTTATAATAGTGGCAATAATAGTGGCCATAA---TGGTGGTCGTAATAATCACAAATTTGGAGCGCCCAAACGTACCGAGTATCGAGGCACGTATGTTATTAATGTGCACATAATTTTCTTTATTGCATTTCATGCCTTCTTGATCTAATTCACTTACTCATTTTCAGTTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAGGTGAGTGGTGTCTGTGTGGTAAATTATAAGGACCGTGGCTAAAAGTGATCTTCCTTTTCTGGTATCTTCTAGCTTCTGAATATTGGTATTCTATGTTTCTTATGTAGGATCATATGCGTCGAGCTGGGGATGTTTGTTTCTCACAAGTTTTCCGTGAGGGGAGTGGTAAGATAATTTGCAACAGATACTAGTTTTATGCTCCTCTTAATTGTCCCTTTGTTTTGTTTGTATAAGGGTTTGTTTTTACTATGCCAAAGGAACTTGCCTATATCAGGACCTATATTGGTAAATTTGGTAAATTAAGAGTCAAGTCTCTATAACTACCCTTTCTCTTTTTTTCCTTTTCCGTCTTTCTGTTGGGTTTTCTTCTTTGAGAAGTGGTTGGAGAAGGATGGATATTTGATCCTTTTTTTTGAGAATAGCAATATATTTTCTGTGGATAACTTGAATTTCAATTGTTTTTATGGCTCTTTAACTTACTACCTTGAGCTGACTATCTTTCATAATGCAACTAGAAAGGCTTTCTCAAAGTAGAATCATTTCTTAAATCTTGTGTTGAATGTGACTGTGGTTCATCATTGGGTCTGCAAGTGTCTTTCCCAACCATATAACAGCTAATATTATCTTTCAGACCCAATCAAAACCAAATCTTGTTCTATGGCCCGTGAATAGATGATATTTTTGGGCTATTGTTGAGAACAAAATTGCTGTACGCTGCAGTAACGTGCATTAGTTATATATTTGATGACTTCTGGCTTAGTTTATAGTTTATAGTTTATACTATAATGTTTAGCCAACTTGGCTGGATAAAGTGACTGCGTCACTCAGTTTGGATGGGATAATGGGTGCTATTACCAATCTTGGTAAAATGGTCAGGTTTGATATATTATATATCCTTTGACTGAAGTTTGTCATTGTACATCATCATTCAAAACATAGTTCCATCCGTTTTAGTCAGAAAACTATTTTTCTCTTCTGGTGCCATAGTAATATAATAGAACAAGAAAGAATTACAGAAAGTTAAAAAGTATTAACATAAAAAAAAAGTAGATGAAAAATTTGTTGGGGTAACGCATAAAGTAAAAAAAATAGCAGGGAAAAATAAAATGGAGCAGAAAAAGAGAAAGGAGGGAAGTCTAAAAGAAATCCTTGGTTTGGGGTTGAGGAAAGACGGTAATGTTTCAACCCAGGTGTTGTAGAAGAGTAGATTAATTATTTTTTGGGGCATTTGTTGGAGAGGTAAGTGGGAGCTCTGTTGGACGATGAGGAGAAGATAGCAGGAAATAAGTGAGCTTATTTTTTCATCTTCCATGTTGAATAACATCCTGTGCTTACCTGTGTATTCCTCACTCTTTGAATAAATGTTGATGTGTGTCTGGATGTAATGCCTGGATTATGTCCCGCCTGGTGATAGTGGTCCTCCATAACAAGATAGTACTGCTATCTGGCTTATTGCATGTTACCAACCTTGAACAAGCCAAGATAATGAAGAGGCTAATCTAATAAGTGGGCTTAACAATGGATACACCAAGAATAGGAGTGGGTCTGGCTCTAATATCATACCATGTTAAGTGGAAAATTTGGGCCCAACTCAACTCCAAAAGGTACCTTAGTGCCAGATCATGCAATAAGATCTCTTTTTCCCTCTTTCCTTCATGTTTCAGATCATGCTAACTCAACTCCAAAAGGTAGCTTAGTGCAAGATCATGCAATAAGATCTCTTTTTACCTCTTTCCTTTAATGTTTCAGATTATGCAATAAGATAACTTTCCTTCTTTCCTTTAATTGTTTCAGTTAGCTTGCTATTAGGTTTTACATAGAAAATTGTCATCATTTTTGTCAGGACAAATATACTAGAGCCTTTATAATTAAGACAGTTAATAGACAGATGGCAAAGATGGTTCGACTCTAAAATAGGAATTTAATAGTTGATTTTACCCTATATAAATGGAATTGAAAATAGTGATTGCCACTCAAAATCTAGGGTCAGCTGAGATTTATTGGATATTTCAATTTTGTGGTTGTGACTAAAATGGCCCGAATGTATGGCTGAGCAGTTTAAAGACCTGTGGAAATAATGTGCTTCAGATTTTTTTTATTCTGTAATCAAATGTGGTGCTGCCTTATCTTTGAAATAATTTCTTGTGCTTCTACTCAATTTTTGTTGTGGCAAGCACCCTACTCTTGCTATGACTTGTGAATTTACTCTCCTTAAGTGATTCTTTTGTGGTGGATGGTGCGCTAACAATCAGTTTTGCTCTTCAGGGACCACTGGGATTGTGGATTATACCAACTATGACGACATGAAATATGCTGTAAGCTATCTCCTGTTTCTTATTCTGTATAATTATCCTCAATTTTTGTTCAAGATATTTGAAATATGTTTATGCTCGACTAACGAGTGTAATTAATTTTCCTTGTATGTAGAT-AAAAAAACTT-GATGAATCTGAGTTTCGGAATGCTTTTTCTCGTT-CAACAATTCGGGTATGATGTGATTATAACTCAAATGATATGATTGCAGGATGCTTAGTGCCTTTTCTTTTGTTAGCCTATACCATTGTCTTATGCTTCATAAAAATATTGCTTTGTCTTATGTAGGTGAAGG</genome_strand>
        <mrna_strand>CTTCATCAATCTTCT-GTTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAG.......................................................................................TATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCGGGTTATGCTTTTGTTGAG.................................................................................................TTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGATTTTGATGGGCATCGTTTGAGG..........................................................................................................................................................................................................................................................................................................................................................................................GTTGAACTTGCACATGGTGGGCGTGGTAACTCATCGTCAAATGATCGTTATAATAGTGGCAATAATAGTGGCCATAATGGTGGTGGTCGGAATAATCACAAATTTGGAGCACCCAAACGTACTGAGTATCGCG.................................................................................TTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAG...........................................................................................................GATCATATGCGTCGAGCTGGGGATGTTTGTTTCTCACAAGTTTTCCGTGAGGGGAGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCACTGGGATTGTGGATTATACCAACTATGACGACATGAAATATGCT................................................................................................................ATAAAAAAAACTTGGATGAATCTGAGTTCCGGAATGCTTTTTCCCGTTCCAACAATTCGG..................................................................................................................GTGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E557764" ref_strand="+" ref_description="SGN-E557764 [16614]">
      <seq>cgaaattctccttcttctctaattgctctgtgttttcatccttcatcaatcttctgttaaaggaacaatgagtcgttcaagtaggactatttatgttggtaatcttcctggtgatattcgtgagcgagaagtggaggatctgttctacaagtatggcccgatagcacatattgatctgaaaattccaccaagacccccgggttatgcttttgttgagtttgaagaggcacgcgatgctgaggatgctattcgtgggcgcgatggctatgattttgatgggcatcgtttgagggttgaacttgcacatggtgggcgtggtaactcatcgtcaaatgatcgttataatagtggcaataatagtggccataatggtggtggtcgtaataatcacaaatttggagcacccaaacgtactgagtatcgagttttagttaccggattgccccattcagcatcctggcaggatctcaaggatcatatgcgtcgagctggggatgtttgtttctcacaagttttccgtgaggggagtgggaccactgggattgtggattataccaactatgacgacatgaaatatgctataaaaaaacttgatgaatctgagtttcggaatgctttttcccgttcaacaattcgggtgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="118636" stop="33934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38613" g_stop="38552" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.806"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38551" i_stop="37767" i_length="785">
            <donor d_prob="0.980" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37766" g_stop="37678" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="151" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37677" i_stop="37591" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37590" g_stop="37525" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="217" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37524" i_stop="37428" i_length="97">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37427" g_stop="37353" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="292" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37352" i_stop="36975" i_length="378">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36974" g_stop="36848" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="425" r_length="133" r_score="0.882"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36847" i_stop="36767" i_length="81">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36766" g_stop="36720" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="472" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="36719" i_stop="36613" i_length="107">
            <donor d_prob="0.699" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36612" g_stop="36555" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="530" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="36554" i_stop="34455" i_length="2100">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="34454" g_stop="34405" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="580" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="34404" i_stop="34293" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="34292" g_stop="34236" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="637" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="34235" i_stop="34122" i_length="114">
            <donor d_prob="0.870" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="34121" g_stop="34116" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="643" r_length="6" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E557764" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E557764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38613" e_stop="38552"/>
          <exon e_start="37766" e_stop="37678"/>
          <exon e_start="37590" e_stop="37525"/>
          <exon e_start="37427" e_stop="37353"/>
          <exon e_start="36974" e_stop="36848"/>
          <exon e_start="36766" e_stop="36720"/>
          <exon e_start="36612" e_stop="36555"/>
          <exon e_start="34454" e_stop="34405"/>
          <exon e_start="34292" e_stop="34236"/>
          <exon e_start="34121" e_stop="34116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAAAATTCTCCTTCTCTAAGCGCTCTGTGTTTTCATCCTTCATCAATCTTCTAGTAAAGGTACGTTCCTTCGGTCTTTGTTAATGGAGGTCCGTTTAATCGGCATCTATCAAACGAAATAGCTAACAAGATCTGTTTTTTAATTTTAGTTTCTTCCGTTTTGCTCATTTTACCCAGCGAAAAATGTATTTCAATTCACTTAAAACGTTGTTCAGAGGCGGATCTAGCATAGAATCAGTCTACATACAGGAAAAATAGCAATAAAGTATCTATACATAATTTGTGTATGTAATTGTGTATCCATTATTAGTGTGTTCTGTATGCAGGAAATGTTTTTTTTCGTCTTGGAAAATAACCGGGTTTCTTACTTAGTTGTGTTCGGTAGGCAAGCGAAAAATATTAGTACAATTATTTGTATGTAATCTAGACAAATACTCTTGAGTTGGGTGGTGGGGATGGTGGCTAAGAGTGTGGTGGTGAAGATGAGGTTGGTTGGAGGGTGGGGAGAACACAATCAATGTGGAATTTTATTTGTTGAACCTGTTTTCACTACTTCCATTGAGGAAGTCAAATTTTTTTATTTTGAAGCAACTTAATTTCCTAGAGAAGATGTTTTCCATAAATTTTACCAACCATGAGAAAACTTGGAAACATTTTTCTGGAAAATGGTTTCATTCGTATCTAACACACCCTATATGTATGTTTGTTACTTTGTTTATGTATTTGTGTGCGAATCAAGTTGATTGCTCAAGTTGTGTTTTTGTGACTTAAGTTCTTCATGAATTTTATCCATTTTTGTTTCTCAGGTGGGTTTTGATTGTATTTTTTTGTTGAATTATTTTTAGGAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAGGTACTTGTATAACACTTAGCTTCATACTTTAGTTGGATGTCATTTACTATGCTCATAAACTTAAATGTGTGTGGCGTATAATTGTAGTATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAGGTAAGTTTTGACTGCATTGGCTAAAATGAATTTCATTGGATATTTCCTTCTCAATTGTTAACCTATTTTGACATTGTTTTGTTGGAACTAAACACAGTTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGGGTTAGTAAAATCTTAACAGCATATAGGATACACACACATGAATCAATTGTATCCTCTGTTTACTCTGAGAAGTATGATTGACTTGCATTTTTGAATCAGGGTTTCCAATTCTTGTATTAATTGCATTTCGTTGACCCTAGCATTTCACCTAAACCATTATGTTTCTTTATTAAATGCTTGTCCCAAATTAGTTGGGATCAGTTTTATAAATTGTCTGTAACCATCCTACTTTATCCAGGCGTATTTTTCTTTTCAAGCTTAGTTTGTCTTTCAAGGCAAATTAACATGTCTAATACATATAAGACACCTAAATGCTAAATAGTTTTCTTTTTGAGGTGCTTAAGATCTAAGCCTACTGAAACTGTTACATGTATGCAGGTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTC--A-GATCGTTATAATAGTGGCAATAATAGTGGCCATAA---TGGTGGTCGTAATAATCACAAATTTGGAGCGCCCAAACGTACCGAGTATCGAGGCACGTATGTTATTAATGTGCACATAATTTTCTTTATTGCATTTCATGCCTTCTTGATCTAATTCACTTACTCATTTTCAGTTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAGGTGAGTGGTGTCTGTGTGGTAAATTATAAGGACCGTGGCTAAAAGTGATCTTCCTTTTCTGGTATCTTCTAGCTTCTGAATATTGGTATTCTATGTTTCTTATGTAGGATCATATGCGTCGAGCTGGGGATGTTTGTTTCTCACAAGTTTTCCGTGAGGGGAGTGGTAAGATAATTTGCAACAGATACTAGTTTTATGCTCCTCTTAATTGTCCCTTTGTTTTGTTTGTATAAGGGTTTGTTTTTACTATGCCAAAGGAACTTGCCTATATCAGGACCTATATTGGTAAATTTGGTAAATTAAGAGTCAAGTCTCTATAACTACCCTTTCTCTTTTTTTCCTTTTCCGTCTTTCTGTTGGGTTTTCTTCTTTGAGAAGTGGTTGGAGAAGGATGGATATTTGATCCTTTTTTTTGAGAATAGCAATATATTTTCTGTGGATAACTTGAATTTCAATTGTTTTTATGGCTCTTTAACTTACTACCTTGAGCTGACTATCTTTCATAATGCAACTAGAAAGGCTTTCTCAAAGTAGAATCATTTCTTAAATCTTGTGTTGAATGTGACTGTGGTTCATCATTGGGTCTGCAAGTGTCTTTCCCAACCATATAACAGCTAATATTATCTTTCAGACCCAATCAAAACCAAATCTTGTTCTATGGCCCGTGAATAGATGATATTTTTGGGCTATTGTTGAGAACAAAATTGCTGTACGCTGCAGTAACGTGCATTAGTTATATATTTGATGACTTCTGGCTTAGTTTATAGTTTATAGTTTATACTATAATGTTTAGCCAACTTGGCTGGATAAAGTGACTGCGTCACTCAGTTTGGATGGGATAATGGGTGCTATTACCAATCTTGGTAAAATGGTCAGGTTTGATATATTATATATCCTTTGACTGAAGTTTGTCATTGTACATCATCATTCAAAACATAGTTCCATCCGTTTTAGTCAGAAAACTATTTTTCTCTTCTGGTGCCATAGTAATATAATAGAACAAGAAAGAATTACAGAAAGTTAAAAAGTATTAACATAAAAAAAAAGTAGATGAAAAATTTGTTGGGGTAACGCATAAAGTAAAAAAAATAGCAGGGAAAAATAAAATGGAGCAGAAAAAGAGAAAGGAGGGAAGTCTAAAAGAAATCCTTGGTTTGGGGTTGAGGAAAGACGGTAATGTTTCAACCCAGGTGTTGTAGAAGAGTAGATTAATTATTTTTTGGGGCATTTGTTGGAGAGGTAAGTGGGAGCTCTGTTGGACGATGAGGAGAAGATAGCAGGAAATAAGTGAGCTTATTTTTTCATCTTCCATGTTGAATAACATCCTGTGCTTACCTGTGTATTCCTCACTCTTTGAATAAATGTTGATGTGTGTCTGGATGTAATGCCTGGATTATGTCCCGCCTGGTGATAGTGGTCCTCCATAACAAGATAGTACTGCTATCTGGCTTATTGCATGTTACCAACCTTGAACAAGCCAAGATAATGAAGAGGCTAATCTAATAAGTGGGCTTAACAATGGATACACCAAGAATAGGAGTGGGTCTGGCTCTAATATCATACCATGTTAAGTGGAAAATTTGGGCCCAACTCAACTCCAAAAGGTACCTTAGTGCCAGATCATGCAATAAGATCTCTTTTTCCCTCTTTCCTTCATGTTTCAGATCATGCTAACTCAACTCCAAAAGGTAGCTTAGTGCAAGATCATGCAATAAGATCTCTTTTTACCTCTTTCCTTTAATGTTTCAGATTATGCAATAAGATAACTTTCCTTCTTTCCTTTAATTGTTTCAGTTAGCTTGCTATTAGGTTTTACATAGAAAATTGTCATCATTTTTGTCAGGACAAATATACTAGAGCCTTTATAATTAAGACAGTTAATAGACAGATGGCAAAGATGGTTCGACTCTAAAATAGGAATTTAATAGTTGATTTTACCCTATATAAATGGAATTGAAAATAGTGATTGCCACTCAAAATCTAGGGTCAGCTGAGATTTATTGGATATTTCAATTTTGTGGTTGTGACTAAAATGGCCCGAATGTATGGCTGAGCAGTTTAAAGACCTGTGGAAATAATGTGCTTCAGATTTTTTTTATTCTGTAATCAAATGTGGTGCTGCCTTATCTTTGAAATAATTTCTTGTGCTTCTACTCAATTTTTGTTGTGGCAAGCACCCTACTCTTGCTATGACTTGTGAATTTACTCTCCTTAAGTGATTCTTTTGTGGTGGATGGTGCGCTAACAATCAGTTTTGCTCTTCAGGGACCACTGGGATTGTGGATTATACCAACTATGACGACATGAAATATGCTGTAAGCTATCTCCTGTTTCTTATTCTGTATAATTATCCTCAATTTTTGTTCAAGATATTTGAAATATGTTTATGCTCGACTAACGAGTGTAATTAATTTTCCTTGTATGTAGATAAAAAAACTTGATGAATCTGAGTTTCGGAATGCTTTTTCTCGTTCAACAATTCGGGTATGATGTGATTATAACTCAAATGATATGATTGCAGGATGCTTAGTGCCTTTTCTTTTGTTAGCCTATACCATTGTCTTATGCTTCATAAAAATATTGCTTTGTCTTATGTAGGTGAAG</genome_strand>
        <mrna_strand>CGAAATTCTCCTTCTTCTCTAATTGCTCTGTGTTTTCATCCTTCATCAATCTTCTGTTAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAATGAGTCGTTCAAGTAGGACTATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAG.......................................................................................TATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCGGGTTATGCTTTTGTTGAG.................................................................................................TTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGATTTTGATGGGCATCGTTTGAGG..........................................................................................................................................................................................................................................................................................................................................................................................GTTGAACTTGCACATGGTGGGCGTGGTAACTCATCGTCAAATGATCGTTATAATAGTGGCAATAATAGTGGCCATAATGGTGGTGGTCGTAATAATCACAAATTTGGAGCACCCAAACGTACTGAGTATCGAG.................................................................................TTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAG...........................................................................................................GATCATATGCGTCGAGCTGGGGATGTTTGTTTCTCACAAGTTTTCCGTGAGGGGAGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCACTGGGATTGTGGATTATACCAACTATGACGACATGAAATATGCT................................................................................................................ATAAAAAAACTTGATGAATCTGAGTTTCGGAATGCTTTTTCCCGTTCAACAATTCGG..................................................................................................................GTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E557472" ref_strand="+" ref_description="SGN-E557472 [16277]">
      <seq>tcgaaattctccttcttctctaattgctctgtgttttcatccttcatcaatcttctgttaaaggaacaatgagtcgttcaagtaggactatttatgttggtaatcttcctggtgatattcgtgagcgagaagtggaggatctgttctacaagtatggcccgatagcacatattgatctgaaaattccaccaagacccccgggttatgcttttgttgagtttgaagaggcacgcgatgctgaggatgctattcgtgggcgcgatggctatgattttgatgggcatcgtttgagggttgaacttgcacatggtgggcgtggtaactcatcgtcaaatgatcgttataatagtggcaataatagtggccataatggtggtggtcgtaataatcacaaatttggagcacccaaacgtactgagtatcgagttttagttaccggattgccccattcagcatcctggcaggatctcaaggatcatatgcgtcgagctggggatgtttgtttctcacaagttttccgtgaggggagtgggacactgggattgtggattataccaactatgacgacatgaaatatgtataaaaaaaactttgatgaatctgagttcggaatgcttttcccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="118638" stop="33948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38614" g_stop="38552" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.794"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38551" i_stop="37767" i_length="785">
            <donor d_prob="0.980" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37766" g_stop="37678" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="152" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37677" i_stop="37591" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37590" g_stop="37525" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="218" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37524" i_stop="37428" i_length="97">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37427" g_stop="37353" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="293" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37352" i_stop="36975" i_length="378">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36974" g_stop="36848" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="426" r_length="133" r_score="0.882"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36847" i_stop="36767" i_length="81">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36766" g_stop="36720" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="473" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="36719" i_stop="36613" i_length="107">
            <donor d_prob="0.699" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36612" g_stop="36555" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="531" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="36554" i_stop="34455" i_length="2100">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="34454" g_stop="34405" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="581" r_length="50" r_score="0.920"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="34404" i_stop="34293" i_length="112">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.959" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="34292" g_stop="34248" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="624" r_length="43" r_score="0.867"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E557472" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E557472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38614" e_stop="38552"/>
          <exon e_start="37766" e_stop="37678"/>
          <exon e_start="37590" e_stop="37525"/>
          <exon e_start="37427" e_stop="37353"/>
          <exon e_start="36974" e_stop="36848"/>
          <exon e_start="36766" e_stop="36720"/>
          <exon e_start="36612" e_stop="36555"/>
          <exon e_start="34454" e_stop="34405"/>
          <exon e_start="34292" e_stop="34248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCAAAATTCTCCTTCTCTAAGCGCTCTGTGTTTTCATCCTTCATCAATCTTCTAGTAAAGGTACGTTCCTTCGGTCTTTGTTAATGGAGGTCCGTTTAATCGGCATCTATCAAACGAAATAGCTAACAAGATCTGTTTTTTAATTTTAGTTTCTTCCGTTTTGCTCATTTTACCCAGCGAAAAATGTATTTCAATTCACTTAAAACGTTGTTCAGAGGCGGATCTAGCATAGAATCAGTCTACATACAGGAAAAATAGCAATAAAGTATCTATACATAATTTGTGTATGTAATTGTGTATCCATTATTAGTGTGTTCTGTATGCAGGAAATGTTTTTTTTCGTCTTGGAAAATAACCGGGTTTCTTACTTAGTTGTGTTCGGTAGGCAAGCGAAAAATATTAGTACAATTATTTGTATGTAATCTAGACAAATACTCTTGAGTTGGGTGGTGGGGATGGTGGCTAAGAGTGTGGTGGTGAAGATGAGGTTGGTTGGAGGGTGGGGAGAACACAATCAATGTGGAATTTTATTTGTTGAACCTGTTTTCACTACTTCCATTGAGGAAGTCAAATTTTTTTATTTTGAAGCAACTTAATTTCCTAGAGAAGATGTTTTCCATAAATTTTACCAACCATGAGAAAACTTGGAAACATTTTTCTGGAAAATGGTTTCATTCGTATCTAACACACCCTATATGTATGTTTGTTACTTTGTTTATGTATTTGTGTGCGAATCAAGTTGATTGCTCAAGTTGTGTTTTTGTGACTTAAGTTCTTCATGAATTTTATCCATTTTTGTTTCTCAGGTGGGTTTTGATTGTATTTTTTTGTTGAATTATTTTTAGGAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAGGTACTTGTATAACACTTAGCTTCATACTTTAGTTGGATGTCATTTACTATGCTCATAAACTTAAATGTGTGTGGCGTATAATTGTAGTATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAGGTAAGTTTTGACTGCATTGGCTAAAATGAATTTCATTGGATATTTCCTTCTCAATTGTTAACCTATTTTGACATTGTTTTGTTGGAACTAAACACAGTTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGGGTTAGTAAAATCTTAACAGCATATAGGATACACACACATGAATCAATTGTATCCTCTGTTTACTCTGAGAAGTATGATTGACTTGCATTTTTGAATCAGGGTTTCCAATTCTTGTATTAATTGCATTTCGTTGACCCTAGCATTTCACCTAAACCATTATGTTTCTTTATTAAATGCTTGTCCCAAATTAGTTGGGATCAGTTTTATAAATTGTCTGTAACCATCCTACTTTATCCAGGCGTATTTTTCTTTTCAAGCTTAGTTTGTCTTTCAAGGCAAATTAACATGTCTAATACATATAAGACACCTAAATGCTAAATAGTTTTCTTTTTGAGGTGCTTAAGATCTAAGCCTACTGAAACTGTTACATGTATGCAGGTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTC--A-GATCGTTATAATAGTGGCAATAATAGTGGCCATAA---TGGTGGTCGTAATAATCACAAATTTGGAGCGCCCAAACGTACCGAGTATCGAGGCACGTATGTTATTAATGTGCACATAATTTTCTTTATTGCATTTCATGCCTTCTTGATCTAATTCACTTACTCATTTTCAGTTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAGGTGAGTGGTGTCTGTGTGGTAAATTATAAGGACCGTGGCTAAAAGTGATCTTCCTTTTCTGGTATCTTCTAGCTTCTGAATATTGGTATTCTATGTTTCTTATGTAGGATCATATGCGTCGAGCTGGGGATGTTTGTTTCTCACAAGTTTTCCGTGAGGGGAGTGGTAAGATAATTTGCAACAGATACTAGTTTTATGCTCCTCTTAATTGTCCCTTTGTTTTGTTTGTATAAGGGTTTGTTTTTACTATGCCAAAGGAACTTGCCTATATCAGGACCTATATTGGTAAATTTGGTAAATTAAGAGTCAAGTCTCTATAACTACCCTTTCTCTTTTTTTCCTTTTCCGTCTTTCTGTTGGGTTTTCTTCTTTGAGAAGTGGTTGGAGAAGGATGGATATTTGATCCTTTTTTTTGAGAATAGCAATATATTTTCTGTGGATAACTTGAATTTCAATTGTTTTTATGGCTCTTTAACTTACTACCTTGAGCTGACTATCTTTCATAATGCAACTAGAAAGGCTTTCTCAAAGTAGAATCATTTCTTAAATCTTGTGTTGAATGTGACTGTGGTTCATCATTGGGTCTGCAAGTGTCTTTCCCAACCATATAACAGCTAATATTATCTTTCAGACCCAATCAAAACCAAATCTTGTTCTATGGCCCGTGAATAGATGATATTTTTGGGCTATTGTTGAGAACAAAATTGCTGTACGCTGCAGTAACGTGCATTAGTTATATATTTGATGACTTCTGGCTTAGTTTATAGTTTATAGTTTATACTATAATGTTTAGCCAACTTGGCTGGATAAAGTGACTGCGTCACTCAGTTTGGATGGGATAATGGGTGCTATTACCAATCTTGGTAAAATGGTCAGGTTTGATATATTATATATCCTTTGACTGAAGTTTGTCATTGTACATCATCATTCAAAACATAGTTCCATCCGTTTTAGTCAGAAAACTATTTTTCTCTTCTGGTGCCATAGTAATATAATAGAACAAGAAAGAATTACAGAAAGTTAAAAAGTATTAACATAAAAAAAAAGTAGATGAAAAATTTGTTGGGGTAACGCATAAAGTAAAAAAAATAGCAGGGAAAAATAAAATGGAGCAGAAAAAGAGAAAGGAGGGAAGTCTAAAAGAAATCCTTGGTTTGGGGTTGAGGAAAGACGGTAATGTTTCAACCCAGGTGTTGTAGAAGAGTAGATTAATTATTTTTTGGGGCATTTGTTGGAGAGGTAAGTGGGAGCTCTGTTGGACGATGAGGAGAAGATAGCAGGAAATAAGTGAGCTTATTTTTTCATCTTCCATGTTGAATAACATCCTGTGCTTACCTGTGTATTCCTCACTCTTTGAATAAATGTTGATGTGTGTCTGGATGTAATGCCTGGATTATGTCCCGCCTGGTGATAGTGGTCCTCCATAACAAGATAGTACTGCTATCTGGCTTATTGCATGTTACCAACCTTGAACAAGCCAAGATAATGAAGAGGCTAATCTAATAAGTGGGCTTAACAATGGATACACCAAGAATAGGAGTGGGTCTGGCTCTAATATCATACCATGTTAAGTGGAAAATTTGGGCCCAACTCAACTCCAAAAGGTACCTTAGTGCCAGATCATGCAATAAGATCTCTTTTTCCCTCTTTCCTTCATGTTTCAGATCATGCTAACTCAACTCCAAAAGGTAGCTTAGTGCAAGATCATGCAATAAGATCTCTTTTTACCTCTTTCCTTTAATGTTTCAGATTATGCAATAAGATAACTTTCCTTCTTTCCTTTAATTGTTTCAGTTAGCTTGCTATTAGGTTTTACATAGAAAATTGTCATCATTTTTGTCAGGACAAATATACTAGAGCCTTTATAATTAAGACAGTTAATAGACAGATGGCAAAGATGGTTCGACTCTAAAATAGGAATTTAATAGTTGATTTTACCCTATATAAATGGAATTGAAAATAGTGATTGCCACTCAAAATCTAGGGTCAGCTGAGATTTATTGGATATTTCAATTTTGTGGTTGTGACTAAAATGGCCCGAATGTATGGCTGAGCAGTTTAAAGACCTGTGGAAATAATGTGCTTCAGATTTTTTTTATTCTGTAATCAAATGTGGTGCTGCCTTATCTTTGAAATAATTTCTTGTGCTTCTACTCAATTTTTGTTGTGGCAAGCACCCTACTCTTGCTATGACTTGTGAATTTACTCTCCTTAAGTGATTCTTTTGTGGTGGATGGTGCGCTAACAATCAGTTTTGCTCTTCAGGGACCACTGGGATTGTGGATTATACCAACTATGACGACATGAAATATG-CTGTAAGCTATCTCCTGTTTCTTATTCTGTATAATTATCCTCAATTTTTGTTCAAGATATTTGAAATATGTTTATGCTCGACTAACGAGTGTAATTAATTTTCCTTGTATGTAGATAAAAAAACTTGATGAATCTGAGTTTCGGAATGCTTTTTCTCGT</genome_strand>
        <mrna_strand>TCGAAATTCTCCTTCTTCTCTAATTGCTCTGTGTTTTCATCCTTCATCAATCTTCTGTTAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAATGAGTCGTTCAAGTAGGACTATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAG.......................................................................................TATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCGGGTTATGCTTTTGTTGAG.................................................................................................TTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGATTTTGATGGGCATCGTTTGAGG..........................................................................................................................................................................................................................................................................................................................................................................................GTTGAACTTGCACATGGTGGGCGTGGTAACTCATCGTCAAATGATCGTTATAATAGTGGCAATAATAGTGGCCATAATGGTGGTGGTCGTAATAATCACAAATTTGGAGCACCCAAACGTACTGAGTATCGAG.................................................................................TTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAG...........................................................................................................GATCATATGCGTCGAGCTGGGGATGTTTGTTTCTCACAAGTTTTCCGTGAGGGGAGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGA-CACTGGGATTGTGGATTATACCAACTATGACGACATGAAATATGTAT................................................................................................................AAAAAAAACTTTGATGAATCTGAG-TTCGGAATGC-TTTTCCCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314227" ref_strand="+" ref_description="SGN-E314227 [cTOA-21-G12]">
      <seq>aattctccttctctaagcgctctgtgttttcatccttcatcaatcttctagtaaaggaacaatgagtcgttcaagtaggacgatttatgttggtaatcttcctggtgatattcgtgagcgagaagtggaggatctgttctacaagtatggcccgatagcacatattgatctgaaaattccaccaagacccccaggttatgcttttgttgagtttgaagaggcacgcgatgctgaggatgctattcgtgggcgcgatggctatgaatttgatgggcatcgtttgagggttgagcttgcacatggtgggcgtggtaactcatcgtcagatcgttataatagtggcaataatagtggccataatggtggtcgtaataatcacaaatttggagcgcccaaacgtaccgagtatcgagttttagttaccggattgccccattcagcatcctggcaggatctcaaggatcatatgcgtcgagctggggatgtttgtttctcacaagttttccgtgaggggagtgggaccactgggattgtggattataccaactatgacgacatgaaatatgctataaaaaaacttgatgaatctgagtttcggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38907" stop="33960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38607" g_stop="38552" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38551" i_stop="37767" i_length="785">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37766" g_stop="37678" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="145" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37677" i_stop="37591" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37590" g_stop="37525" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="211" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37524" i_stop="37428" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37427" g_stop="37353" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="286" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37352" i_stop="36975" i_length="378">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36974" g_stop="36848" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="413" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36847" i_stop="36767" i_length="81">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36766" g_stop="36720" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="460" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="36719" i_stop="36613" i_length="107">
            <donor d_prob="0.699" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36612" g_stop="36555" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="518" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="36554" i_stop="34455" i_length="2100">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="34454" g_stop="34405" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="568" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="34404" i_stop="34293" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="34292" g_stop="34260" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="601" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E314227" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38607" e_stop="38552"/>
          <exon e_start="37766" e_stop="37678"/>
          <exon e_start="37590" e_stop="37525"/>
          <exon e_start="37427" e_stop="37353"/>
          <exon e_start="36974" e_stop="36848"/>
          <exon e_start="36766" e_stop="36720"/>
          <exon e_start="36612" e_stop="36555"/>
          <exon e_start="34454" e_stop="34405"/>
          <exon e_start="34292" e_stop="34260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCTCCTTCTCTAAGCGCTCTGTGTTTTCATCCTTCATCAATCTTCTAGTAAAGGTACGTTCCTTCGGTCTTTGTTAATGGAGGTCCGTTTAATCGGCATCTATCAAACGAAATAGCTAACAAGATCTGTTTTTTAATTTTAGTTTCTTCCGTTTTGCTCATTTTACCCAGCGAAAAATGTATTTCAATTCACTTAAAACGTTGTTCAGAGGCGGATCTAGCATAGAATCAGTCTACATACAGGAAAAATAGCAATAAAGTATCTATACATAATTTGTGTATGTAATTGTGTATCCATTATTAGTGTGTTCTGTATGCAGGAAATGTTTTTTTTCGTCTTGGAAAATAACCGGGTTTCTTACTTAGTTGTGTTCGGTAGGCAAGCGAAAAATATTAGTACAATTATTTGTATGTAATCTAGACAAATACTCTTGAGTTGGGTGGTGGGGATGGTGGCTAAGAGTGTGGTGGTGAAGATGAGGTTGGTTGGAGGGTGGGGAGAACACAATCAATGTGGAATTTTATTTGTTGAACCTGTTTTCACTACTTCCATTGAGGAAGTCAAATTTTTTTATTTTGAAGCAACTTAATTTCCTAGAGAAGATGTTTTCCATAAATTTTACCAACCATGAGAAAACTTGGAAACATTTTTCTGGAAAATGGTTTCATTCGTATCTAACACACCCTATATGTATGTTTGTTACTTTGTTTATGTATTTGTGTGCGAATCAAGTTGATTGCTCAAGTTGTGTTTTTGTGACTTAAGTTCTTCATGAATTTTATCCATTTTTGTTTCTCAGGTGGGTTTTGATTGTATTTTTTTGTTGAATTATTTTTAGGAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAGGTACTTGTATAACACTTAGCTTCATACTTTAGTTGGATGTCATTTACTATGCTCATAAACTTAAATGTGTGTGGCGTATAATTGTAGTATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAGGTAAGTTTTGACTGCATTGGCTAAAATGAATTTCATTGGATATTTCCTTCTCAATTGTTAACCTATTTTGACATTGTTTTGTTGGAACTAAACACAGTTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGGGTTAGTAAAATCTTAACAGCATATAGGATACACACACATGAATCAATTGTATCCTCTGTTTACTCTGAGAAGTATGATTGACTTGCATTTTTGAATCAGGGTTTCCAATTCTTGTATTAATTGCATTTCGTTGACCCTAGCATTTCACCTAAACCATTATGTTTCTTTATTAAATGCTTGTCCCAAATTAGTTGGGATCAGTTTTATAAATTGTCTGTAACCATCCTACTTTATCCAGGCGTATTTTTCTTTTCAAGCTTAGTTTGTCTTTCAAGGCAAATTAACATGTCTAATACATATAAGACACCTAAATGCTAAATAGTTTTCTTTTTGAGGTGCTTAAGATCTAAGCCTACTGAAACTGTTACATGTATGCAGGTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTCAGATCGTTATAATAGTGGCAATAATAGTGGCCATAATGGTGGTCGTAATAATCACAAATTTGGAGCGCCCAAACGTACCGAGTATCGAGGCACGTATGTTATTAATGTGCACATAATTTTCTTTATTGCATTTCATGCCTTCTTGATCTAATTCACTTACTCATTTTCAGTTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAGGTGAGTGGTGTCTGTGTGGTAAATTATAAGGACCGTGGCTAAAAGTGATCTTCCTTTTCTGGTATCTTCTAGCTTCTGAATATTGGTATTCTATGTTTCTTATGTAGGATCATATGCGTCGAGCTGGGGATGTTTGTTTCTCACAAGTTTTCCGTGAGGGGAGTGGTAAGATAATTTGCAACAGATACTAGTTTTATGCTCCTCTTAATTGTCCCTTTGTTTTGTTTGTATAAGGGTTTGTTTTTACTATGCCAAAGGAACTTGCCTATATCAGGACCTATATTGGTAAATTTGGTAAATTAAGAGTCAAGTCTCTATAACTACCCTTTCTCTTTTTTTCCTTTTCCGTCTTTCTGTTGGGTTTTCTTCTTTGAGAAGTGGTTGGAGAAGGATGGATATTTGATCCTTTTTTTTGAGAATAGCAATATATTTTCTGTGGATAACTTGAATTTCAATTGTTTTTATGGCTCTTTAACTTACTACCTTGAGCTGACTATCTTTCATAATGCAACTAGAAAGGCTTTCTCAAAGTAGAATCATTTCTTAAATCTTGTGTTGAATGTGACTGTGGTTCATCATTGGGTCTGCAAGTGTCTTTCCCAACCATATAACAGCTAATATTATCTTTCAGACCCAATCAAAACCAAATCTTGTTCTATGGCCCGTGAATAGATGATATTTTTGGGCTATTGTTGAGAACAAAATTGCTGTACGCTGCAGTAACGTGCATTAGTTATATATTTGATGACTTCTGGCTTAGTTTATAGTTTATAGTTTATACTATAATGTTTAGCCAACTTGGCTGGATAAAGTGACTGCGTCACTCAGTTTGGATGGGATAATGGGTGCTATTACCAATCTTGGTAAAATGGTCAGGTTTGATATATTATATATCCTTTGACTGAAGTTTGTCATTGTACATCATCATTCAAAACATAGTTCCATCCGTTTTAGTCAGAAAACTATTTTTCTCTTCTGGTGCCATAGTAATATAATAGAACAAGAAAGAATTACAGAAAGTTAAAAAGTATTAACATAAAAAAAAAGTAGATGAAAAATTTGTTGGGGTAACGCATAAAGTAAAAAAAATAGCAGGGAAAAATAAAATGGAGCAGAAAAAGAGAAAGGAGGGAAGTCTAAAAGAAATCCTTGGTTTGGGGTTGAGGAAAGACGGTAATGTTTCAACCCAGGTGTTGTAGAAGAGTAGATTAATTATTTTTTGGGGCATTTGTTGGAGAGGTAAGTGGGAGCTCTGTTGGACGATGAGGAGAAGATAGCAGGAAATAAGTGAGCTTATTTTTTCATCTTCCATGTTGAATAACATCCTGTGCTTACCTGTGTATTCCTCACTCTTTGAATAAATGTTGATGTGTGTCTGGATGTAATGCCTGGATTATGTCCCGCCTGGTGATAGTGGTCCTCCATAACAAGATAGTACTGCTATCTGGCTTATTGCATGTTACCAACCTTGAACAAGCCAAGATAATGAAGAGGCTAATCTAATAAGTGGGCTTAACAATGGATACACCAAGAATAGGAGTGGGTCTGGCTCTAATATCATACCATGTTAAGTGGAAAATTTGGGCCCAACTCAACTCCAAAAGGTACCTTAGTGCCAGATCATGCAATAAGATCTCTTTTTCCCTCTTTCCTTCATGTTTCAGATCATGCTAACTCAACTCCAAAAGGTAGCTTAGTGCAAGATCATGCAATAAGATCTCTTTTTACCTCTTTCCTTTAATGTTTCAGATTATGCAATAAGATAACTTTCCTTCTTTCCTTTAATTGTTTCAGTTAGCTTGCTATTAGGTTTTACATAGAAAATTGTCATCATTTTTGTCAGGACAAATATACTAGAGCCTTTATAATTAAGACAGTTAATAGACAGATGGCAAAGATGGTTCGACTCTAAAATAGGAATTTAATAGTTGATTTTACCCTATATAAATGGAATTGAAAATAGTGATTGCCACTCAAAATCTAGGGTCAGCTGAGATTTATTGGATATTTCAATTTTGTGGTTGTGACTAAAATGGCCCGAATGTATGGCTGAGCAGTTTAAAGACCTGTGGAAATAATGTGCTTCAGATTTTTTTTATTCTGTAATCAAATGTGGTGCTGCCTTATCTTTGAAATAATTTCTTGTGCTTCTACTCAATTTTTGTTGTGGCAAGCACCCTACTCTTGCTATGACTTGTGAATTTACTCTCCTTAAGTGATTCTTTTGTGGTGGATGGTGCGCTAACAATCAGTTTTGCTCTTCAGGGACCACTGGGATTGTGGATTATACCAACTATGACGACATGAAATATGCTGTAAGCTATCTCCTGTTTCTTATTCTGTATAATTATCCTCAATTTTTGTTCAAGATATTTGAAATATGTTTATGCTCGACTAACGAGTGTAATTAATTTTCCTTGTATGTAGATAAAAAAACTTGATGAATCTGAGTTTCGGAAT</genome_strand>
        <mrna_strand>AATTCTCCTTCTCTAAGCGCTCTGTGTTTTCATCCTTCATCAATCTTCTAGTAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAG.......................................................................................TATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAG.................................................................................................TTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGG..........................................................................................................................................................................................................................................................................................................................................................................................GTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTCAGATCGTTATAATAGTGGCAATAATAGTGGCCATAATGGTGGTCGTAATAATCACAAATTTGGAGCGCCCAAACGTACCGAGTATCGAG.................................................................................TTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAG...........................................................................................................GATCATATGCGTCGAGCTGGGGATGTTTGTTTCTCACAAGTTTTCCGTGAGGGGAGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCACTGGGATTGTGGATTATACCAACTATGACGACATGAAATATGCT................................................................................................................ATAAAAAAACTTGATGAATCTGAGTTTCGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468668" ref_strand="+" ref_description="SGN-E468668 [cSTB-5-J3]">
      <seq>gtttgagggttgaacttgcacatggtgggcgtggtaactcatcgtcaaatgatcgttataatagtggcaataatagtggccataatggtggtggtcgtaataatcacaaatttggagcacccaaacgtactgagtatcgagtttagtaccgattgccccattcagcatcctggcaggatctcaaggatcatatgcgtcgagctggggatgtttgtttctcacaagttttccgtgaggggagtgggaccactggaattgtggattataccaactatgacgatatgaaatatgctataaaaaaacttgatgaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="117009" stop="33971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37360" g_stop="37353" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37352" i_stop="36975" i_length="378">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36974" g_stop="36848" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="141" r_length="133" r_score="0.882"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36847" i_stop="36767" i_length="81">
            <donor d_prob="0.977" d_score="0.88"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36766" g_stop="36720" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="185" r_length="44" r_score="0.936"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36719" i_stop="36613" i_length="107">
            <donor d_prob="0.699" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36612" g_stop="36555" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="243" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36554" i_stop="34455" i_length="2100">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34454" g_stop="34405" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="293" r_length="50" r_score="0.960"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34404" i_stop="34293" i_length="112">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.959" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34292" g_stop="34271" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="315" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E468668" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>312</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E468668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37360" e_stop="37353"/>
          <exon e_start="36974" e_stop="36848"/>
          <exon e_start="36766" e_stop="36720"/>
          <exon e_start="36612" e_stop="36555"/>
          <exon e_start="34454" e_stop="34405"/>
          <exon e_start="34292" e_stop="34271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGAGGGTTAGTAAAATCTTAACAGCATATAGGATACACACACATGAATCAATTGTATCCTCTGTTTACTCTGAGAAGTATGATTGACTTGCATTTTTGAATCAGGGTTTCCAATTCTTGTATTAATTGCATTTCGTTGACCCTAGCATTTCACCTAAACCATTATGTTTCTTTATTAAATGCTTGTCCCAAATTAGTTGGGATCAGTTTTATAAATTGTCTGTAACCATCCTACTTTATCCAGGCGTATTTTTCTTTTCAAGCTTAGTTTGTCTTTCAAGGCAAATTAACATGTCTAATACATATAAGACACCTAAATGCTAAATAGTTTTCTTTTTGAGGTGCTTAAGATCTAAGCCTACTGAAACTGTTACATGTATGCAGGTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTC--A-GATCGTTATAATAGTGGCAATAATAGTGGCCATAATGGTG---GTCGTAATAATCACAAATTTGGAGCGCCCAAACGTACCGAGTATCGAGGCACGTATGTTATTAATGTGCACATAATTTTCTTTATTGCATTTCATGCCTTCTTGATCTAATTCACTTACTCATTTTCAGTTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAGGTGAGTGGTGTCTGTGTGGTAAATTATAAGGACCGTGGCTAAAAGTGATCTTCCTTTTCTGGTATCTTCTAGCTTCTGAATATTGGTATTCTATGTTTCTTATGTAGGATCATATGCGTCGAGCTGGGGATGTTTGTTTCTCACAAGTTTTCCGTGAGGGGAGTGGTAAGATAATTTGCAACAGATACTAGTTTTATGCTCCTCTTAATTGTCCCTTTGTTTTGTTTGTATAAGGGTTTGTTTTTACTATGCCAAAGGAACTTGCCTATATCAGGACCTATATTGGTAAATTTGGTAAATTAAGAGTCAAGTCTCTATAACTACCCTTTCTCTTTTTTTCCTTTTCCGTCTTTCTGTTGGGTTTTCTTCTTTGAGAAGTGGTTGGAGAAGGATGGATATTTGATCCTTTTTTTTGAGAATAGCAATATATTTTCTGTGGATAACTTGAATTTCAATTGTTTTTATGGCTCTTTAACTTACTACCTTGAGCTGACTATCTTTCATAATGCAACTAGAAAGGCTTTCTCAAAGTAGAATCATTTCTTAAATCTTGTGTTGAATGTGACTGTGGTTCATCATTGGGTCTGCAAGTGTCTTTCCCAACCATATAACAGCTAATATTATCTTTCAGACCCAATCAAAACCAAATCTTGTTCTATGGCCCGTGAATAGATGATATTTTTGGGCTATTGTTGAGAACAAAATTGCTGTACGCTGCAGTAACGTGCATTAGTTATATATTTGATGACTTCTGGCTTAGTTTATAGTTTATAGTTTATACTATAATGTTTAGCCAACTTGGCTGGATAAAGTGACTGCGTCACTCAGTTTGGATGGGATAATGGGTGCTATTACCAATCTTGGTAAAATGGTCAGGTTTGATATATTATATATCCTTTGACTGAAGTTTGTCATTGTACATCATCATTCAAAACATAGTTCCATCCGTTTTAGTCAGAAAACTATTTTTCTCTTCTGGTGCCATAGTAATATAATAGAACAAGAAAGAATTACAGAAAGTTAAAAAGTATTAACATAAAAAAAAAGTAGATGAAAAATTTGTTGGGGTAACGCATAAAGTAAAAAAAATAGCAGGGAAAAATAAAATGGAGCAGAAAAAGAGAAAGGAGGGAAGTCTAAAAGAAATCCTTGGTTTGGGGTTGAGGAAAGACGGTAATGTTTCAACCCAGGTGTTGTAGAAGAGTAGATTAATTATTTTTTGGGGCATTTGTTGGAGAGGTAAGTGGGAGCTCTGTTGGACGATGAGGAGAAGATAGCAGGAAATAAGTGAGCTTATTTTTTCATCTTCCATGTTGAATAACATCCTGTGCTTACCTGTGTATTCCTCACTCTTTGAATAAATGTTGATGTGTGTCTGGATGTAATGCCTGGATTATGTCCCGCCTGGTGATAGTGGTCCTCCATAACAAGATAGTACTGCTATCTGGCTTATTGCATGTTACCAACCTTGAACAAGCCAAGATAATGAAGAGGCTAATCTAATAAGTGGGCTTAACAATGGATACACCAAGAATAGGAGTGGGTCTGGCTCTAATATCATACCATGTTAAGTGGAAAATTTGGGCCCAACTCAACTCCAAAAGGTACCTTAGTGCCAGATCATGCAATAAGATCTCTTTTTCCCTCTTTCCTTCATGTTTCAGATCATGCTAACTCAACTCCAAAAGGTAGCTTAGTGCAAGATCATGCAATAAGATCTCTTTTTACCTCTTTCCTTTAATGTTTCAGATTATGCAATAAGATAACTTTCCTTCTTTCCTTTAATTGTTTCAGTTAGCTTGCTATTAGGTTTTACATAGAAAATTGTCATCATTTTTGTCAGGACAAATATACTAGAGCCTTTATAATTAAGACAGTTAATAGACAGATGGCAAAGATGGTTCGACTCTAAAATAGGAATTTAATAGTTGATTTTACCCTATATAAATGGAATTGAAAATAGTGATTGCCACTCAAAATCTAGGGTCAGCTGAGATTTATTGGATATTTCAATTTTGTGGTTGTGACTAAAATGGCCCGAATGTATGGCTGAGCAGTTTAAAGACCTGTGGAAATAATGTGCTTCAGATTTTTTTTATTCTGTAATCAAATGTGGTGCTGCCTTATCTTTGAAATAATTTCTTGTGCTTCTACTCAATTTTTGTTGTGGCAAGCACCCTACTCTTGCTATGACTTGTGAATTTACTCTCCTTAAGTGATTCTTTTGTGGTGGATGGTGCGCTAACAATCAGTTTTGCTCTTCAGGGACCACTGGGATTGTGGATTATACCAACTATGACGACATGAAATATGCTGTAAGCTATCTCCTGTTTCTTATTCTGTATAATTATCCTCAATTTTTGTTCAAGATATTTGAAATATGTTTATGCTCGACTAACGAGTGTAATTAATTTTCCTTGTATGTAGATAAAAAAACTTGATGAATCTG</genome_strand>
        <mrna_strand>GTTTGAGG..........................................................................................................................................................................................................................................................................................................................................................................................GTTGAACTTGCACATGGTGGGCGTGGTAACTCATCGTCAAATGATCGTTATAATAGTGGCAATAATAGTGGCCATAATGGTGGTGGTCGTAATAATCACAAATTTGGAGCACCCAAACGTACTGAGTATCGAG.................................................................................-TTTAG-TACC-GATTGCCCCATTCAGCATCCTGGCAGGATCTCAAG...........................................................................................................GATCATATGCGTCGAGCTGGGGATGTTTGTTTCTCACAAGTTTTCCGTGAGGGGAGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCACTGGAATTGTGGATTATACCAACTATGACGATATGAAATATGCT................................................................................................................ATAAAAAAACTTGATGAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E482658" ref_strand="+" ref_description="SGN-E482658 [cSTE-1-M7]">
      <seq>tggtgggccgtggtaactcatcgtcaaatgaacgttataatagtggcaataatagtggccataatggtggtggtcgtaataatcacaaatttggagcacccaaacgtactgagtatcgagttttagttaccggattgccccattcagcatcctggcaggatctcaaggatcatatgcgtcgagctggggatgtttgtttctcgcaagtttccgtaggggagtgggaccctgggattgtggattataccaactatgacgacatgaaatatgctataaaaaaacttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="116987" stop="34101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36960" g_stop="36848" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.850"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36847" i_stop="36767" i_length="81">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36766" g_stop="36720" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="167" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36719" i_stop="36613" i_length="107">
            <donor d_prob="0.699" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36612" g_stop="36555" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="223" r_length="56" r_score="0.948"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36554" i_stop="34455" i_length="2100">
            <donor d_prob="0.922" d_score="0.94"/>
            <acceptor a_prob="0.926" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34454" g_stop="34405" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="272" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34404" i_stop="34293" i_length="112">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34292" g_stop="34278" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="287" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E482658" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E482658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36960" e_stop="36848"/>
          <exon e_start="36766" e_stop="36720"/>
          <exon e_start="36612" e_stop="36555"/>
          <exon e_start="34454" e_stop="34405"/>
          <exon e_start="34292" e_stop="34278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGGG-CGTGGTAACTCATCGTC--A-GATCGTTATAATAGTGGCAATAATAGTGGCCATAA---TGGTGGTCGTAATAATCACAAATTTGGAGCGCCCAAACGTACCGAGTATCGAGGCACGTATGTTATTAATGTGCACATAATTTTCTTTATTGCATTTCATGCCTTCTTGATCTAATTCACTTACTCATTTTCAGTTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAGGTGAGTGGTGTCTGTGTGGTAAATTATAAGGACCGTGGCTAAAAGTGATCTTCCTTTTCTGGTATCTTCTAGCTTCTGAATATTGGTATTCTATGTTTCTTATGTAGGATCATATGCGTCGAGCTGGGGATGTTTGTTTCTCACAAGTTTTCCGTGAGGGGAGTGGTAAGATAATTTGCAACAGATACTAGTTTTATGCTCCTCTTAATTGTCCCTTTGTTTTGTTTGTATAAGGGTTTGTTTTTACTATGCCAAAGGAACTTGCCTATATCAGGACCTATATTGGTAAATTTGGTAAATTAAGAGTCAAGTCTCTATAACTACCCTTTCTCTTTTTTTCCTTTTCCGTCTTTCTGTTGGGTTTTCTTCTTTGAGAAGTGGTTGGAGAAGGATGGATATTTGATCCTTTTTTTTGAGAATAGCAATATATTTTCTGTGGATAACTTGAATTTCAATTGTTTTTATGGCTCTTTAACTTACTACCTTGAGCTGACTATCTTTCATAATGCAACTAGAAAGGCTTTCTCAAAGTAGAATCATTTCTTAAATCTTGTGTTGAATGTGACTGTGGTTCATCATTGGGTCTGCAAGTGTCTTTCCCAACCATATAACAGCTAATATTATCTTTCAGACCCAATCAAAACCAAATCTTGTTCTATGGCCCGTGAATAGATGATATTTTTGGGCTATTGTTGAGAACAAAATTGCTGTACGCTGCAGTAACGTGCATTAGTTATATATTTGATGACTTCTGGCTTAGTTTATAGTTTATAGTTTATACTATAATGTTTAGCCAACTTGGCTGGATAAAGTGACTGCGTCACTCAGTTTGGATGGGATAATGGGTGCTATTACCAATCTTGGTAAAATGGTCAGGTTTGATATATTATATATCCTTTGACTGAAGTTTGTCATTGTACATCATCATTCAAAACATAGTTCCATCCGTTTTAGTCAGAAAACTATTTTTCTCTTCTGGTGCCATAGTAATATAATAGAACAAGAAAGAATTACAGAAAGTTAAAAAGTATTAACATAAAAAAAAAGTAGATGAAAAATTTGTTGGGGTAACGCATAAAGTAAAAAAAATAGCAGGGAAAAATAAAATGGAGCAGAAAAAGAGAAAGGAGGGAAGTCTAAAAGAAATCCTTGGTTTGGGGTTGAGGAAAGACGGTAATGTTTCAACCCAGGTGTTGTAGAAGAGTAGATTAATTATTTTTTGGGGCATTTGTTGGAGAGGTAAGTGGGAGCTCTGTTGGACGATGAGGAGAAGATAGCAGGAAATAAGTGAGCTTATTTTTTCATCTTCCATGTTGAATAACATCCTGTGCTTACCTGTGTATTCCTCACTCTTTGAATAAATGTTGATGTGTGTCTGGATGTAATGCCTGGATTATGTCCCGCCTGGTGATAGTGGTCCTCCATAACAAGATAGTACTGCTATCTGGCTTATTGCATGTTACCAACCTTGAACAAGCCAAGATAATGAAGAGGCTAATCTAATAAGTGGGCTTAACAATGGATACACCAAGAATAGGAGTGGGTCTGGCTCTAATATCATACCATGTTAAGTGGAAAATTTGGGCCCAACTCAACTCCAAAAGGTACCTTAGTGCCAGATCATGCAATAAGATCTCTTTTTCCCTCTTTCCTTCATGTTTCAGATCATGCTAACTCAACTCCAAAAGGTAGCTTAGTGCAAGATCATGCAATAAGATCTCTTTTTACCTCTTTCCTTTAATGTTTCAGATTATGCAATAAGATAACTTTCCTTCTTTCCTTTAATTGTTTCAGTTAGCTTGCTATTAGGTTTTACATAGAAAATTGTCATCATTTTTGTCAGGACAAATATACTAGAGCCTTTATAATTAAGACAGTTAATAGACAGATGGCAAAGATGGTTCGACTCTAAAATAGGAATTTAATAGTTGATTTTACCCTATATAAATGGAATTGAAAATAGTGATTGCCACTCAAAATCTAGGGTCAGCTGAGATTTATTGGATATTTCAATTTTGTGGTTGTGACTAAAATGGCCCGAATGTATGGCTGAGCAGTTTAAAGACCTGTGGAAATAATGTGCTTCAGATTTTTTTTATTCTGTAATCAAATGTGGTGCTGCCTTATCTTTGAAATAATTTCTTGTGCTTCTACTCAATTTTTGTTGTGGCAAGCACCCTACTCTTGCTATGACTTGTGAATTTACTCTCCTTAAGTGATTCTTTTGTGGTGGATGGTGCGCTAACAATCAGTTTTGCTCTTCAGGGACCACTGGGATTGTGGATTATACCAACTATGACGACATGAAATATGCTGTAAGCTATCTCCTGTTTCTTATTCTGTATAATTATCCTCAATTTTTGTTCAAGATATTTGAAATATGTTTATGCTCGACTAACGAGTGTAATTAATTTTCCTTGTATGTAGATAAAAAAACTTGAT</genome_strand>
        <mrna_strand>TGGTGGGCCGTGGTAACTCATCGTCAAATGAACGTTATAATAGTGGCAATAATAGTGGCCATAATGGTGGTGGTCGTAATAATCACAAATTTGGAGCACCCAAACGTACTGAGTATCGAG.................................................................................TTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAG...........................................................................................................GATCATATGCGTCGAGCTGGGGATGTTTGTTTCTCGCAAG-TTTCCGT-AGGGGAGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACC-CTGGGATTGTGGATTATACCAACTATGACGACATGAAATATGCT................................................................................................................ATAAAAAAACTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205241" ref_strand="+" ref_description="SGN-E205241 [cLEC-25-B23]">
      <seq>tccttctctaagcgctctgtgttttcatccttcatcaatcttctagtaaaggaacaatgagtcgttcaagtaggacgatttatgttggtaatcttcctggtgatattcgtgagcgagaagtggaggatctgttctacaagtatggcccgatagcacatattgatctgaaaattccaccaagacccccaggttatgcttttgttgagtttgaagaggcacgcgatgctgaggatgctattcgtgggcgcgatggctatgaatttgatgggcatcgtttgagggttgagcttgcacatggtgggcgtggtaactcatcgtcagatcgttataatagtggcaataatagtggccataatggtggtcgtaataatcacaaatttggagcgcccaaacgtaccgagtatcgagttttagttaccggattgccccattcagcatcctggcaggatctcaaggatcatatgcgtcgagctggggatgtttgtttctcacaagttttccgtgaggggagtgggaccactgggattgtggattataccaactatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38902" stop="34121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38602" g_stop="38552" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38551" i_stop="37767" i_length="785">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37766" g_stop="37678" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="140" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37677" i_stop="37591" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37590" g_stop="37525" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="206" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37524" i_stop="37428" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37427" g_stop="37353" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="281" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37352" i_stop="36975" i_length="378">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36974" g_stop="36848" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="408" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36847" i_stop="36767" i_length="81">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36766" g_stop="36720" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="455" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="36719" i_stop="36613" i_length="107">
            <donor d_prob="0.699" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36612" g_stop="36555" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="513" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="36554" i_stop="34455" i_length="2100">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="34454" g_stop="34421" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="547" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E205241" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38602" e_stop="38552"/>
          <exon e_start="37766" e_stop="37678"/>
          <exon e_start="37590" e_stop="37525"/>
          <exon e_start="37427" e_stop="37353"/>
          <exon e_start="36974" e_stop="36848"/>
          <exon e_start="36766" e_stop="36720"/>
          <exon e_start="36612" e_stop="36555"/>
          <exon e_start="34454" e_stop="34421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTCTCTAAGCGCTCTGTGTTTTCATCCTTCATCAATCTTCTAGTAAAGGTACGTTCCTTCGGTCTTTGTTAATGGAGGTCCGTTTAATCGGCATCTATCAAACGAAATAGCTAACAAGATCTGTTTTTTAATTTTAGTTTCTTCCGTTTTGCTCATTTTACCCAGCGAAAAATGTATTTCAATTCACTTAAAACGTTGTTCAGAGGCGGATCTAGCATAGAATCAGTCTACATACAGGAAAAATAGCAATAAAGTATCTATACATAATTTGTGTATGTAATTGTGTATCCATTATTAGTGTGTTCTGTATGCAGGAAATGTTTTTTTTCGTCTTGGAAAATAACCGGGTTTCTTACTTAGTTGTGTTCGGTAGGCAAGCGAAAAATATTAGTACAATTATTTGTATGTAATCTAGACAAATACTCTTGAGTTGGGTGGTGGGGATGGTGGCTAAGAGTGTGGTGGTGAAGATGAGGTTGGTTGGAGGGTGGGGAGAACACAATCAATGTGGAATTTTATTTGTTGAACCTGTTTTCACTACTTCCATTGAGGAAGTCAAATTTTTTTATTTTGAAGCAACTTAATTTCCTAGAGAAGATGTTTTCCATAAATTTTACCAACCATGAGAAAACTTGGAAACATTTTTCTGGAAAATGGTTTCATTCGTATCTAACACACCCTATATGTATGTTTGTTACTTTGTTTATGTATTTGTGTGCGAATCAAGTTGATTGCTCAAGTTGTGTTTTTGTGACTTAAGTTCTTCATGAATTTTATCCATTTTTGTTTCTCAGGTGGGTTTTGATTGTATTTTTTTGTTGAATTATTTTTAGGAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAGGTACTTGTATAACACTTAGCTTCATACTTTAGTTGGATGTCATTTACTATGCTCATAAACTTAAATGTGTGTGGCGTATAATTGTAGTATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAGGTAAGTTTTGACTGCATTGGCTAAAATGAATTTCATTGGATATTTCCTTCTCAATTGTTAACCTATTTTGACATTGTTTTGTTGGAACTAAACACAGTTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGGGTTAGTAAAATCTTAACAGCATATAGGATACACACACATGAATCAATTGTATCCTCTGTTTACTCTGAGAAGTATGATTGACTTGCATTTTTGAATCAGGGTTTCCAATTCTTGTATTAATTGCATTTCGTTGACCCTAGCATTTCACCTAAACCATTATGTTTCTTTATTAAATGCTTGTCCCAAATTAGTTGGGATCAGTTTTATAAATTGTCTGTAACCATCCTACTTTATCCAGGCGTATTTTTCTTTTCAAGCTTAGTTTGTCTTTCAAGGCAAATTAACATGTCTAATACATATAAGACACCTAAATGCTAAATAGTTTTCTTTTTGAGGTGCTTAAGATCTAAGCCTACTGAAACTGTTACATGTATGCAGGTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTCAGATCGTTATAATAGTGGCAATAATAGTGGCCATAATGGTGGTCGTAATAATCACAAATTTGGAGCGCCCAAACGTACCGAGTATCGAGGCACGTATGTTATTAATGTGCACATAATTTTCTTTATTGCATTTCATGCCTTCTTGATCTAATTCACTTACTCATTTTCAGTTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAGGTGAGTGGTGTCTGTGTGGTAAATTATAAGGACCGTGGCTAAAAGTGATCTTCCTTTTCTGGTATCTTCTAGCTTCTGAATATTGGTATTCTATGTTTCTTATGTAGGATCATATGCGTCGAGCTGGGGATGTTTGTTTCTCACAAGTTTTCCGTGAGGGGAGTGGTAAGATAATTTGCAACAGATACTAGTTTTATGCTCCTCTTAATTGTCCCTTTGTTTTGTTTGTATAAGGGTTTGTTTTTACTATGCCAAAGGAACTTGCCTATATCAGGACCTATATTGGTAAATTTGGTAAATTAAGAGTCAAGTCTCTATAACTACCCTTTCTCTTTTTTTCCTTTTCCGTCTTTCTGTTGGGTTTTCTTCTTTGAGAAGTGGTTGGAGAAGGATGGATATTTGATCCTTTTTTTTGAGAATAGCAATATATTTTCTGTGGATAACTTGAATTTCAATTGTTTTTATGGCTCTTTAACTTACTACCTTGAGCTGACTATCTTTCATAATGCAACTAGAAAGGCTTTCTCAAAGTAGAATCATTTCTTAAATCTTGTGTTGAATGTGACTGTGGTTCATCATTGGGTCTGCAAGTGTCTTTCCCAACCATATAACAGCTAATATTATCTTTCAGACCCAATCAAAACCAAATCTTGTTCTATGGCCCGTGAATAGATGATATTTTTGGGCTATTGTTGAGAACAAAATTGCTGTACGCTGCAGTAACGTGCATTAGTTATATATTTGATGACTTCTGGCTTAGTTTATAGTTTATAGTTTATACTATAATGTTTAGCCAACTTGGCTGGATAAAGTGACTGCGTCACTCAGTTTGGATGGGATAATGGGTGCTATTACCAATCTTGGTAAAATGGTCAGGTTTGATATATTATATATCCTTTGACTGAAGTTTGTCATTGTACATCATCATTCAAAACATAGTTCCATCCGTTTTAGTCAGAAAACTATTTTTCTCTTCTGGTGCCATAGTAATATAATAGAACAAGAAAGAATTACAGAAAGTTAAAAAGTATTAACATAAAAAAAAAGTAGATGAAAAATTTGTTGGGGTAACGCATAAAGTAAAAAAAATAGCAGGGAAAAATAAAATGGAGCAGAAAAAGAGAAAGGAGGGAAGTCTAAAAGAAATCCTTGGTTTGGGGTTGAGGAAAGACGGTAATGTTTCAACCCAGGTGTTGTAGAAGAGTAGATTAATTATTTTTTGGGGCATTTGTTGGAGAGGTAAGTGGGAGCTCTGTTGGACGATGAGGAGAAGATAGCAGGAAATAAGTGAGCTTATTTTTTCATCTTCCATGTTGAATAACATCCTGTGCTTACCTGTGTATTCCTCACTCTTTGAATAAATGTTGATGTGTGTCTGGATGTAATGCCTGGATTATGTCCCGCCTGGTGATAGTGGTCCTCCATAACAAGATAGTACTGCTATCTGGCTTATTGCATGTTACCAACCTTGAACAAGCCAAGATAATGAAGAGGCTAATCTAATAAGTGGGCTTAACAATGGATACACCAAGAATAGGAGTGGGTCTGGCTCTAATATCATACCATGTTAAGTGGAAAATTTGGGCCCAACTCAACTCCAAAAGGTACCTTAGTGCCAGATCATGCAATAAGATCTCTTTTTCCCTCTTTCCTTCATGTTTCAGATCATGCTAACTCAACTCCAAAAGGTAGCTTAGTGCAAGATCATGCAATAAGATCTCTTTTTACCTCTTTCCTTTAATGTTTCAGATTATGCAATAAGATAACTTTCCTTCTTTCCTTTAATTGTTTCAGTTAGCTTGCTATTAGGTTTTACATAGAAAATTGTCATCATTTTTGTCAGGACAAATATACTAGAGCCTTTATAATTAAGACAGTTAATAGACAGATGGCAAAGATGGTTCGACTCTAAAATAGGAATTTAATAGTTGATTTTACCCTATATAAATGGAATTGAAAATAGTGATTGCCACTCAAAATCTAGGGTCAGCTGAGATTTATTGGATATTTCAATTTTGTGGTTGTGACTAAAATGGCCCGAATGTATGGCTGAGCAGTTTAAAGACCTGTGGAAATAATGTGCTTCAGATTTTTTTTATTCTGTAATCAAATGTGGTGCTGCCTTATCTTTGAAATAATTTCTTGTGCTTCTACTCAATTTTTGTTGTGGCAAGCACCCTACTCTTGCTATGACTTGTGAATTTACTCTCCTTAAGTGATTCTTTTGTGGTGGATGGTGCGCTAACAATCAGTTTTGCTCTTCAGGGACCACTGGGATTGTGGATTATACCAACTATGA</genome_strand>
        <mrna_strand>TCCTTCTCTAAGCGCTCTGTGTTTTCATCCTTCATCAATCTTCTAGTAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAG.......................................................................................TATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAG.................................................................................................TTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGG..........................................................................................................................................................................................................................................................................................................................................................................................GTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTCAGATCGTTATAATAGTGGCAATAATAGTGGCCATAATGGTGGTCGTAATAATCACAAATTTGGAGCGCCCAAACGTACCGAGTATCGAG.................................................................................TTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAG...........................................................................................................GATCATATGCGTCGAGCTGGGGATGTTTGTTTCTCACAAGTTTTCCGTGAGGGGAGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCACTGGGATTGTGGATTATACCAACTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E619879" ref_strand="+" ref_description="SGN-E619879 [70574]">
      <seq>cttcgaaattctccttcttctctaagtgctctgtgtttttatccttcatcaatcttctgttaaaggaacaatgagtcgttcaagtaggacgatttatgttggtaatcttcctggtgatattcgtgagcgagaagtggaggatctgtctacaagtatggcccgatagcacatattgatctgaaaattccaccaagacccccgggttatgctttgttgagtttgaagaggcacgcgatgctgaggatgctattcgtgggcgcgatggctatgattttgatgggcatcgtttgagggttgaacttgcacatggtgggcgtggtaactcatcgtcaaatgatcgttataatagtggcaataatagtggccataatggtggtggtcggaataatcacaaatttggagcacccaaacgtactgagtatcgcgttttagttaccggattgccccattcagcatcctggcaggatctcaaggatcatatgcgtcgagctggggatgttgtttctcacaagttttccgtgaggggagtgggacccactgggattgtggattatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="118640" stop="34129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38613" g_stop="38552" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.823"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38551" i_stop="37767" i_length="785">
            <donor d_prob="0.980" d_score="0.83"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37766" g_stop="37678" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="153" r_length="88" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37677" i_stop="37591" i_length="87">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37590" g_stop="37525" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="218" r_length="65" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37524" i_stop="37428" i_length="97">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37427" g_stop="37353" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="293" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37352" i_stop="36975" i_length="378">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36974" g_stop="36848" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="426" r_length="133" r_score="0.866"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36847" i_stop="36767" i_length="81">
            <donor d_prob="0.977" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36766" g_stop="36720" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="473" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="36719" i_stop="36613" i_length="107">
            <donor d_prob="0.699" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36612" g_stop="36555" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="530" r_length="57" r_score="0.983"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="36554" i_stop="34455" i_length="2100">
            <donor d_prob="0.922" d_score="0.98"/>
            <acceptor a_prob="0.926" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="34454" g_stop="34429" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="557" r_length="27" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E619879" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E619879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38613" e_stop="38552"/>
          <exon e_start="37766" e_stop="37678"/>
          <exon e_start="37590" e_stop="37525"/>
          <exon e_start="37427" e_stop="37353"/>
          <exon e_start="36974" e_stop="36848"/>
          <exon e_start="36766" e_stop="36720"/>
          <exon e_start="36612" e_stop="36555"/>
          <exon e_start="34454" e_stop="34429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAAAATTCTCC-T-T-CTCTAAGCGCTCTGTGTTTTCATCCTTCATCAATCTTCTAGTAAAGGTACGTTCCTTCGGTCTTTGTTAATGGAGGTCCGTTTAATCGGCATCTATCAAACGAAATAGCTAACAAGATCTGTTTTTTAATTTTAGTTTCTTCCGTTTTGCTCATTTTACCCAGCGAAAAATGTATTTCAATTCACTTAAAACGTTGTTCAGAGGCGGATCTAGCATAGAATCAGTCTACATACAGGAAAAATAGCAATAAAGTATCTATACATAATTTGTGTATGTAATTGTGTATCCATTATTAGTGTGTTCTGTATGCAGGAAATGTTTTTTTTCGTCTTGGAAAATAACCGGGTTTCTTACTTAGTTGTGTTCGGTAGGCAAGCGAAAAATATTAGTACAATTATTTGTATGTAATCTAGACAAATACTCTTGAGTTGGGTGGTGGGGATGGTGGCTAAGAGTGTGGTGGTGAAGATGAGGTTGGTTGGAGGGTGGGGAGAACACAATCAATGTGGAATTTTATTTGTTGAACCTGTTTTCACTACTTCCATTGAGGAAGTCAAATTTTTTTATTTTGAAGCAACTTAATTTCCTAGAGAAGATGTTTTCCATAAATTTTACCAACCATGAGAAAACTTGGAAACATTTTTCTGGAAAATGGTTTCATTCGTATCTAACACACCCTATATGTATGTTTGTTACTTTGTTTATGTATTTGTGTGCGAATCAAGTTGATTGCTCAAGTTGTGTTTTTGTGACTTAAGTTCTTCATGAATTTTATCCATTTTTGTTTCTCAGGTGGGTTTTGATTGTATTTTTTTGTTGAATTATTTTTAGGAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAGGTACTTGTATAACACTTAGCTTCATACTTTAGTTGGATGTCATTTACTATGCTCATAAACTTAAATGTGTGTGGCGTATAATTGTAGTATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAGGTAAGTTTTGACTGCATTGGCTAAAATGAATTTCATTGGATATTTCCTTCTCAATTGTTAACCTATTTTGACATTGTTTTGTTGGAACTAAACACAGTTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGGGTTAGTAAAATCTTAACAGCATATAGGATACACACACATGAATCAATTGTATCCTCTGTTTACTCTGAGAAGTATGATTGACTTGCATTTTTGAATCAGGGTTTCCAATTCTTGTATTAATTGCATTTCGTTGACCCTAGCATTTCACCTAAACCATTATGTTTCTTTATTAAATGCTTGTCCCAAATTAGTTGGGATCAGTTTTATAAATTGTCTGTAACCATCCTACTTTATCCAGGCGTATTTTTCTTTTCAAGCTTAGTTTGTCTTTCAAGGCAAATTAACATGTCTAATACATATAAGACACCTAAATGCTAAATAGTTTTCTTTTTGAGGTGCTTAAGATCTAAGCCTACTGAAACTGTTACATGTATGCAGGTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTC--A-GATCGTTATAATAGTGGCAATAATAGTGGCCATAA---TGGTGGTCGTAATAATCACAAATTTGGAGCGCCCAAACGTACCGAGTATCGAGGCACGTATGTTATTAATGTGCACATAATTTTCTTTATTGCATTTCATGCCTTCTTGATCTAATTCACTTACTCATTTTCAGTTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAGGTGAGTGGTGTCTGTGTGGTAAATTATAAGGACCGTGGCTAAAAGTGATCTTCCTTTTCTGGTATCTTCTAGCTTCTGAATATTGGTATTCTATGTTTCTTATGTAGGATCATATGCGTCGAGCTGGGGATGTTTGTTTCTCACAAGTTTTCCGTGAGGGGAGTGGTAAGATAATTTGCAACAGATACTAGTTTTATGCTCCTCTTAATTGTCCCTTTGTTTTGTTTGTATAAGGGTTTGTTTTTACTATGCCAAAGGAACTTGCCTATATCAGGACCTATATTGGTAAATTTGGTAAATTAAGAGTCAAGTCTCTATAACTACCCTTTCTCTTTTTTTCCTTTTCCGTCTTTCTGTTGGGTTTTCTTCTTTGAGAAGTGGTTGGAGAAGGATGGATATTTGATCCTTTTTTTTGAGAATAGCAATATATTTTCTGTGGATAACTTGAATTTCAATTGTTTTTATGGCTCTTTAACTTACTACCTTGAGCTGACTATCTTTCATAATGCAACTAGAAAGGCTTTCTCAAAGTAGAATCATTTCTTAAATCTTGTGTTGAATGTGACTGTGGTTCATCATTGGGTCTGCAAGTGTCTTTCCCAACCATATAACAGCTAATATTATCTTTCAGACCCAATCAAAACCAAATCTTGTTCTATGGCCCGTGAATAGATGATATTTTTGGGCTATTGTTGAGAACAAAATTGCTGTACGCTGCAGTAACGTGCATTAGTTATATATTTGATGACTTCTGGCTTAGTTTATAGTTTATAGTTTATACTATAATGTTTAGCCAACTTGGCTGGATAAAGTGACTGCGTCACTCAGTTTGGATGGGATAATGGGTGCTATTACCAATCTTGGTAAAATGGTCAGGTTTGATATATTATATATCCTTTGACTGAAGTTTGTCATTGTACATCATCATTCAAAACATAGTTCCATCCGTTTTAGTCAGAAAACTATTTTTCTCTTCTGGTGCCATAGTAATATAATAGAACAAGAAAGAATTACAGAAAGTTAAAAAGTATTAACATAAAAAAAAAGTAGATGAAAAATTTGTTGGGGTAACGCATAAAGTAAAAAAAATAGCAGGGAAAAATAAAATGGAGCAGAAAAAGAGAAAGGAGGGAAGTCTAAAAGAAATCCTTGGTTTGGGGTTGAGGAAAGACGGTAATGTTTCAACCCAGGTGTTGTAGAAGAGTAGATTAATTATTTTTTGGGGCATTTGTTGGAGAGGTAAGTGGGAGCTCTGTTGGACGATGAGGAGAAGATAGCAGGAAATAAGTGAGCTTATTTTTTCATCTTCCATGTTGAATAACATCCTGTGCTTACCTGTGTATTCCTCACTCTTTGAATAAATGTTGATGTGTGTCTGGATGTAATGCCTGGATTATGTCCCGCCTGGTGATAGTGGTCCTCCATAACAAGATAGTACTGCTATCTGGCTTATTGCATGTTACCAACCTTGAACAAGCCAAGATAATGAAGAGGCTAATCTAATAAGTGGGCTTAACAATGGATACACCAAGAATAGGAGTGGGTCTGGCTCTAATATCATACCATGTTAAGTGGAAAATTTGGGCCCAACTCAACTCCAAAAGGTACCTTAGTGCCAGATCATGCAATAAGATCTCTTTTTCCCTCTTTCCTTCATGTTTCAGATCATGCTAACTCAACTCCAAAAGGTAGCTTAGTGCAAGATCATGCAATAAGATCTCTTTTTACCTCTTTCCTTTAATGTTTCAGATTATGCAATAAGATAACTTTCCTTCTTTCCTTTAATTGTTTCAGTTAGCTTGCTATTAGGTTTTACATAGAAAATTGTCATCATTTTTGTCAGGACAAATATACTAGAGCCTTTATAATTAAGACAGTTAATAGACAGATGGCAAAGATGGTTCGACTCTAAAATAGGAATTTAATAGTTGATTTTACCCTATATAAATGGAATTGAAAATAGTGATTGCCACTCAAAATCTAGGGTCAGCTGAGATTTATTGGATATTTCAATTTTGTGGTTGTGACTAAAATGGCCCGAATGTATGGCTGAGCAGTTTAAAGACCTGTGGAAATAATGTGCTTCAGATTTTTTTTATTCTGTAATCAAATGTGGTGCTGCCTTATCTTTGAAATAATTTCTTGTGCTTCTACTCAATTTTTGTTGTGGCAAGCACCCTACTCTTGCTATGACTTGTGAATTTACTCTCCTTAAGTGATTCTTTTGTGGTGGATGGTGCGCTAACAATCAGTTTTGCTCTTCAGGGA-CCACTGGGATTGTGGATTATACC</genome_strand>
        <mrna_strand>CTTCGAAATTCTCCTTCTTCTCTAAGTGCTCTGTGTTTTTATCCTTCATCAATCTTCTGTTAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTG-TCTACAAG.......................................................................................TATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCGGGTTATGC-TTTGTTGAG.................................................................................................TTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGATTTTGATGGGCATCGTTTGAGG..........................................................................................................................................................................................................................................................................................................................................................................................GTTGAACTTGCACATGGTGGGCGTGGTAACTCATCGTCAAATGATCGTTATAATAGTGGCAATAATAGTGGCCATAATGGTGGTGGTCGGAATAATCACAAATTTGGAGCACCCAAACGTACTGAGTATCGCG.................................................................................TTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAG...........................................................................................................GATCATATGCGTCGAGCTGGGGATG-TTGTTTCTCACAAGTTTTCCGTGAGGGGAGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCCACTGGGATTGTGGATTATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349024" ref_strand="+" ref_description="SGN-E349024 [cTOF-29-F10]">
      <seq>aaaaccctaaccttcaaaattctccttctctaagcgctctgtgttttcatccttcatcaatcttctagtaaaggaacaatgagtcgttcaagtaggacgatttatgttggtaatcttcctggtgatattcgtgagcgagaagtggaggatctgttctacaagtatggcccgatagcacatattgatctgaaaattccaccaagacccccaggttatgcttttgttgagtttgaagaggcacgcgatgctgaggatgctattcgtgggcgcgatggctatgaatttgatgggcatcgtttgagggttgagcttgcacatggtgggcgtggtaactcatcgtcagatcgttataatagtggcaataatagtggccataatggtggtcgtaataatcacaaatttggagcgcccaaacgtaccgagtatcgagttttagttaccggattgccccattcagcatcctggcaggatctcaaggatcatatgcgtcgagctggggatgtttgtttctcacaagttttccgtgaggggagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38924" stop="36255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38624" g_stop="38552" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38551" i_stop="37767" i_length="785">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37766" g_stop="37678" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="162" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37677" i_stop="37591" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37590" g_stop="37525" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="228" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37524" i_stop="37428" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37427" g_stop="37353" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="303" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37352" i_stop="36975" i_length="378">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36974" g_stop="36848" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="430" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36847" i_stop="36767" i_length="81">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36766" g_stop="36720" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="477" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="36719" i_stop="36613" i_length="107">
            <donor d_prob="0.699" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36612" g_stop="36555" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="535" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E349024" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38624" e_stop="38552"/>
          <exon e_start="37766" e_stop="37678"/>
          <exon e_start="37590" e_stop="37525"/>
          <exon e_start="37427" e_stop="37353"/>
          <exon e_start="36974" e_stop="36848"/>
          <exon e_start="36766" e_stop="36720"/>
          <exon e_start="36612" e_stop="36555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCCTAACCTTCAAAATTCTCCTTCTCTAAGCGCTCTGTGTTTTCATCCTTCATCAATCTTCTAGTAAAGGTACGTTCCTTCGGTCTTTGTTAATGGAGGTCCGTTTAATCGGCATCTATCAAACGAAATAGCTAACAAGATCTGTTTTTTAATTTTAGTTTCTTCCGTTTTGCTCATTTTACCCAGCGAAAAATGTATTTCAATTCACTTAAAACGTTGTTCAGAGGCGGATCTAGCATAGAATCAGTCTACATACAGGAAAAATAGCAATAAAGTATCTATACATAATTTGTGTATGTAATTGTGTATCCATTATTAGTGTGTTCTGTATGCAGGAAATGTTTTTTTTCGTCTTGGAAAATAACCGGGTTTCTTACTTAGTTGTGTTCGGTAGGCAAGCGAAAAATATTAGTACAATTATTTGTATGTAATCTAGACAAATACTCTTGAGTTGGGTGGTGGGGATGGTGGCTAAGAGTGTGGTGGTGAAGATGAGGTTGGTTGGAGGGTGGGGAGAACACAATCAATGTGGAATTTTATTTGTTGAACCTGTTTTCACTACTTCCATTGAGGAAGTCAAATTTTTTTATTTTGAAGCAACTTAATTTCCTAGAGAAGATGTTTTCCATAAATTTTACCAACCATGAGAAAACTTGGAAACATTTTTCTGGAAAATGGTTTCATTCGTATCTAACACACCCTATATGTATGTTTGTTACTTTGTTTATGTATTTGTGTGCGAATCAAGTTGATTGCTCAAGTTGTGTTTTTGTGACTTAAGTTCTTCATGAATTTTATCCATTTTTGTTTCTCAGGTGGGTTTTGATTGTATTTTTTTGTTGAATTATTTTTAGGAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAGGTACTTGTATAACACTTAGCTTCATACTTTAGTTGGATGTCATTTACTATGCTCATAAACTTAAATGTGTGTGGCGTATAATTGTAGTATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAGGTAAGTTTTGACTGCATTGGCTAAAATGAATTTCATTGGATATTTCCTTCTCAATTGTTAACCTATTTTGACATTGTTTTGTTGGAACTAAACACAGTTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGGGTTAGTAAAATCTTAACAGCATATAGGATACACACACATGAATCAATTGTATCCTCTGTTTACTCTGAGAAGTATGATTGACTTGCATTTTTGAATCAGGGTTTCCAATTCTTGTATTAATTGCATTTCGTTGACCCTAGCATTTCACCTAAACCATTATGTTTCTTTATTAAATGCTTGTCCCAAATTAGTTGGGATCAGTTTTATAAATTGTCTGTAACCATCCTACTTTATCCAGGCGTATTTTTCTTTTCAAGCTTAGTTTGTCTTTCAAGGCAAATTAACATGTCTAATACATATAAGACACCTAAATGCTAAATAGTTTTCTTTTTGAGGTGCTTAAGATCTAAGCCTACTGAAACTGTTACATGTATGCAGGTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTCAGATCGTTATAATAGTGGCAATAATAGTGGCCATAATGGTGGTCGTAATAATCACAAATTTGGAGCGCCCAAACGTACCGAGTATCGAGGCACGTATGTTATTAATGTGCACATAATTTTCTTTATTGCATTTCATGCCTTCTTGATCTAATTCACTTACTCATTTTCAGTTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAGGTGAGTGGTGTCTGTGTGGTAAATTATAAGGACCGTGGCTAAAAGTGATCTTCCTTTTCTGGTATCTTCTAGCTTCTGAATATTGGTATTCTATGTTTCTTATGTAGGATCATATGCGTCGAGCTGGGGATGTTTGTTTCTCACAAGTTTTCCGTGAGGGGAGTG</genome_strand>
        <mrna_strand>AAAACCCTAACCTTCAAAATTCTCCTTCTCTAAGCGCTCTGTGTTTTCATCCTTCATCAATCTTCTAGTAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAG.......................................................................................TATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAG.................................................................................................TTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGG..........................................................................................................................................................................................................................................................................................................................................................................................GTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTCAGATCGTTATAATAGTGGCAATAATAGTGGCCATAATGGTGGTCGTAATAATCACAAATTTGGAGCGCCCAAACGTACCGAGTATCGAG.................................................................................TTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAG...........................................................................................................GATCATATGCGTCGAGCTGGGGATGTTTGTTTCTCACAAGTTTTCCGTGAGGGGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331080" ref_strand="+" ref_description="SGN-E331080 [cTOD-6-I24]">
      <seq>ttttcatccttcatcaatcttctagtaaaggaacaatgagtcgttcaagtaggacgatttatgttggtaatcttcctggtgatattcgtgagcgagaagtggaggatctgttctacaagtatggcccgatagcacatattgatctgaaaattccaccaagacccccaggttatgcttttgttgagtttgaagaggcacgcgatgctgaggatgctattcgtgggcgcgatggctatgaatttgatgggcatcgtttgagggttgagcttgcacatggtgggcgtggtaactcatcgtcagatcgttataatagtggcaataatagtggccataatggtggtcgtaataatcacaaatttggagcgcccaaacgtaccgagtatcgagttttagttaccggattgccccattcagcatcctggcaggatctcaaggatcatatgcgtcgagctggggatgtttgtttctcacaagtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38881" stop="36269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38581" g_stop="38552" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38551" i_stop="37767" i_length="785">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37766" g_stop="37678" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="119" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37677" i_stop="37591" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37590" g_stop="37525" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="185" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37524" i_stop="37428" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37427" g_stop="37353" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="260" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37352" i_stop="36975" i_length="378">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36974" g_stop="36848" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="387" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36847" i_stop="36767" i_length="81">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36766" g_stop="36720" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="434" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="36719" i_stop="36613" i_length="107">
            <donor d_prob="0.699" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36612" g_stop="36569" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="478" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E331080" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38581" e_stop="38552"/>
          <exon e_start="37766" e_stop="37678"/>
          <exon e_start="37590" e_stop="37525"/>
          <exon e_start="37427" e_stop="37353"/>
          <exon e_start="36974" e_stop="36848"/>
          <exon e_start="36766" e_stop="36720"/>
          <exon e_start="36612" e_stop="36569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCATCCTTCATCAATCTTCTAGTAAAGGTACGTTCCTTCGGTCTTTGTTAATGGAGGTCCGTTTAATCGGCATCTATCAAACGAAATAGCTAACAAGATCTGTTTTTTAATTTTAGTTTCTTCCGTTTTGCTCATTTTACCCAGCGAAAAATGTATTTCAATTCACTTAAAACGTTGTTCAGAGGCGGATCTAGCATAGAATCAGTCTACATACAGGAAAAATAGCAATAAAGTATCTATACATAATTTGTGTATGTAATTGTGTATCCATTATTAGTGTGTTCTGTATGCAGGAAATGTTTTTTTTCGTCTTGGAAAATAACCGGGTTTCTTACTTAGTTGTGTTCGGTAGGCAAGCGAAAAATATTAGTACAATTATTTGTATGTAATCTAGACAAATACTCTTGAGTTGGGTGGTGGGGATGGTGGCTAAGAGTGTGGTGGTGAAGATGAGGTTGGTTGGAGGGTGGGGAGAACACAATCAATGTGGAATTTTATTTGTTGAACCTGTTTTCACTACTTCCATTGAGGAAGTCAAATTTTTTTATTTTGAAGCAACTTAATTTCCTAGAGAAGATGTTTTCCATAAATTTTACCAACCATGAGAAAACTTGGAAACATTTTTCTGGAAAATGGTTTCATTCGTATCTAACACACCCTATATGTATGTTTGTTACTTTGTTTATGTATTTGTGTGCGAATCAAGTTGATTGCTCAAGTTGTGTTTTTGTGACTTAAGTTCTTCATGAATTTTATCCATTTTTGTTTCTCAGGTGGGTTTTGATTGTATTTTTTTGTTGAATTATTTTTAGGAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAGGTACTTGTATAACACTTAGCTTCATACTTTAGTTGGATGTCATTTACTATGCTCATAAACTTAAATGTGTGTGGCGTATAATTGTAGTATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAGGTAAGTTTTGACTGCATTGGCTAAAATGAATTTCATTGGATATTTCCTTCTCAATTGTTAACCTATTTTGACATTGTTTTGTTGGAACTAAACACAGTTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGGGTTAGTAAAATCTTAACAGCATATAGGATACACACACATGAATCAATTGTATCCTCTGTTTACTCTGAGAAGTATGATTGACTTGCATTTTTGAATCAGGGTTTCCAATTCTTGTATTAATTGCATTTCGTTGACCCTAGCATTTCACCTAAACCATTATGTTTCTTTATTAAATGCTTGTCCCAAATTAGTTGGGATCAGTTTTATAAATTGTCTGTAACCATCCTACTTTATCCAGGCGTATTTTTCTTTTCAAGCTTAGTTTGTCTTTCAAGGCAAATTAACATGTCTAATACATATAAGACACCTAAATGCTAAATAGTTTTCTTTTTGAGGTGCTTAAGATCTAAGCCTACTGAAACTGTTACATGTATGCAGGTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTCAGATCGTTATAATAGTGGCAATAATAGTGGCCATAATGGTGGTCGTAATAATCACAAATTTGGAGCGCCCAAACGTACCGAGTATCGAGGCACGTATGTTATTAATGTGCACATAATTTTCTTTATTGCATTTCATGCCTTCTTGATCTAATTCACTTACTCATTTTCAGTTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAGGTGAGTGGTGTCTGTGTGGTAAATTATAAGGACCGTGGCTAAAAGTGATCTTCCTTTTCTGGTATCTTCTAGCTTCTGAATATTGGTATTCTATGTTTCTTATGTAGGATCATATGCGTCGAGCTGGGGATGTTTGTTTCTCACAAGTTTT</genome_strand>
        <mrna_strand>TTTTCATCCTTCATCAATCTTCTAGTAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAG.......................................................................................TATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAG.................................................................................................TTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGG..........................................................................................................................................................................................................................................................................................................................................................................................GTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTCAGATCGTTATAATAGTGGCAATAATAGTGGCCATAATGGTGGTCGTAATAATCACAAATTTGGAGCGCCCAAACGTACCGAGTATCGAG.................................................................................TTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAG...........................................................................................................GATCATATGCGTCGAGCTGGGGATGTTTGTTTCTCACAAGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207746" ref_strand="+" ref_description="SGN-E207746 [cLEC-32-E4]">
      <seq>ttcaaaattctccttctctaagcgctctgtgttttcatccttcatcaatcttctagtaaaggaacaatgagtcgttcaagtaggacgatttatgttggtaatcttcctggtgatattcgtgagcgagaagtggaggatctgttctacaagtatggcccgatagcacatattgatctgaaaattccaccaagacccccaggttatgcttttgttgagtttgaagaggcacgcgatgctgaggatgctattcgtgggcgcgatggctatgaatttgatgggcatcgtttgagggttgagcttgcacatggtgggcgtggtaactcatcgtcagatcgttataatagtggcaataatagtggccataatggtggtcgtaataatcacaaatttggagcgcccaaacgtaccgagtatcgagttttagttaccggattgccccattcagcatcctggcaggatctcaaggatcatatgcgtcgagctggggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38912" stop="36289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38612" g_stop="38552" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38551" i_stop="37767" i_length="785">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37766" g_stop="37678" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="150" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37677" i_stop="37591" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37590" g_stop="37525" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="216" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37524" i_stop="37428" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37427" g_stop="37353" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="291" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37352" i_stop="36975" i_length="378">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36974" g_stop="36848" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="418" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36847" i_stop="36767" i_length="81">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36766" g_stop="36720" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="465" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="36719" i_stop="36613" i_length="107">
            <donor d_prob="0.699" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36612" g_stop="36589" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="489" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E207746" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38612" e_stop="38552"/>
          <exon e_start="37766" e_stop="37678"/>
          <exon e_start="37590" e_stop="37525"/>
          <exon e_start="37427" e_stop="37353"/>
          <exon e_start="36974" e_stop="36848"/>
          <exon e_start="36766" e_stop="36720"/>
          <exon e_start="36612" e_stop="36589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAAATTCTCCTTCTCTAAGCGCTCTGTGTTTTCATCCTTCATCAATCTTCTAGTAAAGGTACGTTCCTTCGGTCTTTGTTAATGGAGGTCCGTTTAATCGGCATCTATCAAACGAAATAGCTAACAAGATCTGTTTTTTAATTTTAGTTTCTTCCGTTTTGCTCATTTTACCCAGCGAAAAATGTATTTCAATTCACTTAAAACGTTGTTCAGAGGCGGATCTAGCATAGAATCAGTCTACATACAGGAAAAATAGCAATAAAGTATCTATACATAATTTGTGTATGTAATTGTGTATCCATTATTAGTGTGTTCTGTATGCAGGAAATGTTTTTTTTCGTCTTGGAAAATAACCGGGTTTCTTACTTAGTTGTGTTCGGTAGGCAAGCGAAAAATATTAGTACAATTATTTGTATGTAATCTAGACAAATACTCTTGAGTTGGGTGGTGGGGATGGTGGCTAAGAGTGTGGTGGTGAAGATGAGGTTGGTTGGAGGGTGGGGAGAACACAATCAATGTGGAATTTTATTTGTTGAACCTGTTTTCACTACTTCCATTGAGGAAGTCAAATTTTTTTATTTTGAAGCAACTTAATTTCCTAGAGAAGATGTTTTCCATAAATTTTACCAACCATGAGAAAACTTGGAAACATTTTTCTGGAAAATGGTTTCATTCGTATCTAACACACCCTATATGTATGTTTGTTACTTTGTTTATGTATTTGTGTGCGAATCAAGTTGATTGCTCAAGTTGTGTTTTTGTGACTTAAGTTCTTCATGAATTTTATCCATTTTTGTTTCTCAGGTGGGTTTTGATTGTATTTTTTTGTTGAATTATTTTTAGGAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAGGTACTTGTATAACACTTAGCTTCATACTTTAGTTGGATGTCATTTACTATGCTCATAAACTTAAATGTGTGTGGCGTATAATTGTAGTATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAGGTAAGTTTTGACTGCATTGGCTAAAATGAATTTCATTGGATATTTCCTTCTCAATTGTTAACCTATTTTGACATTGTTTTGTTGGAACTAAACACAGTTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGGGTTAGTAAAATCTTAACAGCATATAGGATACACACACATGAATCAATTGTATCCTCTGTTTACTCTGAGAAGTATGATTGACTTGCATTTTTGAATCAGGGTTTCCAATTCTTGTATTAATTGCATTTCGTTGACCCTAGCATTTCACCTAAACCATTATGTTTCTTTATTAAATGCTTGTCCCAAATTAGTTGGGATCAGTTTTATAAATTGTCTGTAACCATCCTACTTTATCCAGGCGTATTTTTCTTTTCAAGCTTAGTTTGTCTTTCAAGGCAAATTAACATGTCTAATACATATAAGACACCTAAATGCTAAATAGTTTTCTTTTTGAGGTGCTTAAGATCTAAGCCTACTGAAACTGTTACATGTATGCAGGTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTCAGATCGTTATAATAGTGGCAATAATAGTGGCCATAATGGTGGTCGTAATAATCACAAATTTGGAGCGCCCAAACGTACCGAGTATCGAGGCACGTATGTTATTAATGTGCACATAATTTTCTTTATTGCATTTCATGCCTTCTTGATCTAATTCACTTACTCATTTTCAGTTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAGGTGAGTGGTGTCTGTGTGGTAAATTATAAGGACCGTGGCTAAAAGTGATCTTCCTTTTCTGGTATCTTCTAGCTTCTGAATATTGGTATTCTATGTTTCTTATGTAGGATCATATGCGTCGAGCTGGGGAT</genome_strand>
        <mrna_strand>TTCAAAATTCTCCTTCTCTAAGCGCTCTGTGTTTTCATCCTTCATCAATCTTCTAGTAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAG.......................................................................................TATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAG.................................................................................................TTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGG..........................................................................................................................................................................................................................................................................................................................................................................................GTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTCAGATCGTTATAATAGTGGCAATAATAGTGGCCATAATGGTGGTCGTAATAATCACAAATTTGGAGCGCCCAAACGTACCGAGTATCGAG.................................................................................TTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAG...........................................................................................................GATCATATGCGTCGAGCTGGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291630" ref_strand="+" ref_description="SGN-E291630 [cLET-6-J16]">
      <seq>caaaattctccttctctaagcgctctgtgttttcatccttcatcaatcttctagtaaaggaacaatgagtcgttcaagtaggacgatttatgttggtaatcttcctggtgatattcgtgagcgagaagtggaggatctgttctacaagtatggcccgatagcacatattgatctgaaaattccaccaagacccccaggttatgcttttgttgagtttgaagaggcacgcgatgctgaggatgctattcgtgggcgcgatggctatgaatttgatgggcatcgtttgagggttgagcttgcacatggtgggcgtggtaactcatcgtcagatcgttataatagtggcaataatagtggccataatggtggtcgtaataatcacaaatttggagcgcccaaacgtaccgagtatcgagttttagttaccggattgccccattcagcatcctggcaggatctcaaggatcatatgcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38910" stop="36416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38610" g_stop="38552" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38551" i_stop="37767" i_length="785">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37766" g_stop="37678" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="148" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37677" i_stop="37591" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37590" g_stop="37525" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="214" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37524" i_stop="37428" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37427" g_stop="37353" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="289" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37352" i_stop="36975" i_length="378">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36974" g_stop="36848" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="416" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36847" i_stop="36767" i_length="81">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36766" g_stop="36720" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="463" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="36719" i_stop="36613" i_length="107">
            <donor d_prob="0.699" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36612" g_stop="36601" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="475" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E291630" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38610" e_stop="38552"/>
          <exon e_start="37766" e_stop="37678"/>
          <exon e_start="37590" e_stop="37525"/>
          <exon e_start="37427" e_stop="37353"/>
          <exon e_start="36974" e_stop="36848"/>
          <exon e_start="36766" e_stop="36720"/>
          <exon e_start="36612" e_stop="36601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATTCTCCTTCTCTAAGCGCTCTGTGTTTTCATCCTTCATCAATCTTCTAGTAAAGGTACGTTCCTTCGGTCTTTGTTAATGGAGGTCCGTTTAATCGGCATCTATCAAACGAAATAGCTAACAAGATCTGTTTTTTAATTTTAGTTTCTTCCGTTTTGCTCATTTTACCCAGCGAAAAATGTATTTCAATTCACTTAAAACGTTGTTCAGAGGCGGATCTAGCATAGAATCAGTCTACATACAGGAAAAATAGCAATAAAGTATCTATACATAATTTGTGTATGTAATTGTGTATCCATTATTAGTGTGTTCTGTATGCAGGAAATGTTTTTTTTCGTCTTGGAAAATAACCGGGTTTCTTACTTAGTTGTGTTCGGTAGGCAAGCGAAAAATATTAGTACAATTATTTGTATGTAATCTAGACAAATACTCTTGAGTTGGGTGGTGGGGATGGTGGCTAAGAGTGTGGTGGTGAAGATGAGGTTGGTTGGAGGGTGGGGAGAACACAATCAATGTGGAATTTTATTTGTTGAACCTGTTTTCACTACTTCCATTGAGGAAGTCAAATTTTTTTATTTTGAAGCAACTTAATTTCCTAGAGAAGATGTTTTCCATAAATTTTACCAACCATGAGAAAACTTGGAAACATTTTTCTGGAAAATGGTTTCATTCGTATCTAACACACCCTATATGTATGTTTGTTACTTTGTTTATGTATTTGTGTGCGAATCAAGTTGATTGCTCAAGTTGTGTTTTTGTGACTTAAGTTCTTCATGAATTTTATCCATTTTTGTTTCTCAGGTGGGTTTTGATTGTATTTTTTTGTTGAATTATTTTTAGGAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAGGTACTTGTATAACACTTAGCTTCATACTTTAGTTGGATGTCATTTACTATGCTCATAAACTTAAATGTGTGTGGCGTATAATTGTAGTATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAGGTAAGTTTTGACTGCATTGGCTAAAATGAATTTCATTGGATATTTCCTTCTCAATTGTTAACCTATTTTGACATTGTTTTGTTGGAACTAAACACAGTTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGGGTTAGTAAAATCTTAACAGCATATAGGATACACACACATGAATCAATTGTATCCTCTGTTTACTCTGAGAAGTATGATTGACTTGCATTTTTGAATCAGGGTTTCCAATTCTTGTATTAATTGCATTTCGTTGACCCTAGCATTTCACCTAAACCATTATGTTTCTTTATTAAATGCTTGTCCCAAATTAGTTGGGATCAGTTTTATAAATTGTCTGTAACCATCCTACTTTATCCAGGCGTATTTTTCTTTTCAAGCTTAGTTTGTCTTTCAAGGCAAATTAACATGTCTAATACATATAAGACACCTAAATGCTAAATAGTTTTCTTTTTGAGGTGCTTAAGATCTAAGCCTACTGAAACTGTTACATGTATGCAGGTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTCAGATCGTTATAATAGTGGCAATAATAGTGGCCATAATGGTGGTCGTAATAATCACAAATTTGGAGCGCCCAAACGTACCGAGTATCGAGGCACGTATGTTATTAATGTGCACATAATTTTCTTTATTGCATTTCATGCCTTCTTGATCTAATTCACTTACTCATTTTCAGTTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAGGTGAGTGGTGTCTGTGTGGTAAATTATAAGGACCGTGGCTAAAAGTGATCTTCCTTTTCTGGTATCTTCTAGCTTCTGAATATTGGTATTCTATGTTTCTTATGTAGGATCATATGCGT</genome_strand>
        <mrna_strand>CAAAATTCTCCTTCTCTAAGCGCTCTGTGTTTTCATCCTTCATCAATCTTCTAGTAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAG.......................................................................................TATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAG.................................................................................................TTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGG..........................................................................................................................................................................................................................................................................................................................................................................................GTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTCAGATCGTTATAATAGTGGCAATAATAGTGGCCATAATGGTGGTCGTAATAATCACAAATTTGGAGCGCCCAAACGTACCGAGTATCGAG.................................................................................TTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAG...........................................................................................................GATCATATGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445636" ref_strand="+" ref_description="SGN-E445636 [cSTA-16-F4]">
      <seq>cgaaattctccttcttctctaagtgctctgtgttttcatccttcatcaatcttctagcaaaggaacaatgagtcgttcaagtaggacgatatatgttggtaatcttcctggtgatattcgtgagcgagaagtggaggatctgttctacaagtatggcccgatagcacatattgatctgaaaattccaccaagacccccgggttatgcttttgttgagtttgaagaggcacgcgatgctgaggatgctattcgtgggcgcgatggctatgattttgatgggcatcgtttgagggttgaacttgcacatggtgggcgtggtaactcatcgtcaaatgatcgttataaaagtggcaataatagtggccataatggtggtggtcgtaataatcacaaatttggagcacccaaacgtactgagtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="118636" stop="36552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38613" g_stop="38552" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.839"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38551" i_stop="37767" i_length="785">
            <donor d_prob="0.980" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37766" g_stop="37678" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="151" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37677" i_stop="37591" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37590" g_stop="37525" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="217" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37524" i_stop="37428" i_length="97">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37427" g_stop="37353" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="292" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37352" i_stop="36975" i_length="378">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36974" g_stop="36852" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="421" r_length="129" r_score="0.870"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E445636" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E445636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38613" e_stop="38552"/>
          <exon e_start="37766" e_stop="37678"/>
          <exon e_start="37590" e_stop="37525"/>
          <exon e_start="37427" e_stop="37353"/>
          <exon e_start="36974" e_stop="36852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAAAATTCTCCTTCTCTAAGCGCTCTGTGTTTTCATCCTTCATCAATCTTCTAGTAAAGGTACGTTCCTTCGGTCTTTGTTAATGGAGGTCCGTTTAATCGGCATCTATCAAACGAAATAGCTAACAAGATCTGTTTTTTAATTTTAGTTTCTTCCGTTTTGCTCATTTTACCCAGCGAAAAATGTATTTCAATTCACTTAAAACGTTGTTCAGAGGCGGATCTAGCATAGAATCAGTCTACATACAGGAAAAATAGCAATAAAGTATCTATACATAATTTGTGTATGTAATTGTGTATCCATTATTAGTGTGTTCTGTATGCAGGAAATGTTTTTTTTCGTCTTGGAAAATAACCGGGTTTCTTACTTAGTTGTGTTCGGTAGGCAAGCGAAAAATATTAGTACAATTATTTGTATGTAATCTAGACAAATACTCTTGAGTTGGGTGGTGGGGATGGTGGCTAAGAGTGTGGTGGTGAAGATGAGGTTGGTTGGAGGGTGGGGAGAACACAATCAATGTGGAATTTTATTTGTTGAACCTGTTTTCACTACTTCCATTGAGGAAGTCAAATTTTTTTATTTTGAAGCAACTTAATTTCCTAGAGAAGATGTTTTCCATAAATTTTACCAACCATGAGAAAACTTGGAAACATTTTTCTGGAAAATGGTTTCATTCGTATCTAACACACCCTATATGTATGTTTGTTACTTTGTTTATGTATTTGTGTGCGAATCAAGTTGATTGCTCAAGTTGTGTTTTTGTGACTTAAGTTCTTCATGAATTTTATCCATTTTTGTTTCTCAGGTGGGTTTTGATTGTATTTTTTTGTTGAATTATTTTTAGGAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAGGTACTTGTATAACACTTAGCTTCATACTTTAGTTGGATGTCATTTACTATGCTCATAAACTTAAATGTGTGTGGCGTATAATTGTAGTATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAGGTAAGTTTTGACTGCATTGGCTAAAATGAATTTCATTGGATATTTCCTTCTCAATTGTTAACCTATTTTGACATTGTTTTGTTGGAACTAAACACAGTTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGGGTTAGTAAAATCTTAACAGCATATAGGATACACACACATGAATCAATTGTATCCTCTGTTTACTCTGAGAAGTATGATTGACTTGCATTTTTGAATCAGGGTTTCCAATTCTTGTATTAATTGCATTTCGTTGACCCTAGCATTTCACCTAAACCATTATGTTTCTTTATTAAATGCTTGTCCCAAATTAGTTGGGATCAGTTTTATAAATTGTCTGTAACCATCCTACTTTATCCAGGCGTATTTTTCTTTTCAAGCTTAGTTTGTCTTTCAAGGCAAATTAACATGTCTAATACATATAAGACACCTAAATGCTAAATAGTTTTCTTTTTGAGGTGCTTAAGATCTAAGCCTACTGAAACTGTTACATGTATGCAGGTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTC--A-GATCGTTATAATAGTGGCAATAATAGTGGCCATAATGGT---GGTCGTAATAATCACAAATTTGGAGCGCCCAAACGTACCGAGTAT</genome_strand>
        <mrna_strand>CGAAATTCTCCTTCTTCTCTAAGTGCTCTGTGTTTTCATCCTTCATCAATCTTCTAGCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAATGAGTCGTTCAAGTAGGACGATATATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAG.......................................................................................TATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCGGGTTATGCTTTTGTTGAG.................................................................................................TTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGATTTTGATGGGCATCGTTTGAGG..........................................................................................................................................................................................................................................................................................................................................................................................GTTGAACTTGCACATGGTGGGCGTGGTAACTCATCGTCAAATGATCGTTATAAAAGTGGCAATAATAGTGGCCATAATGGTGGTGGTCGTAATAATCACAAATTTGGAGCACCCAAACGTACTGAGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483872" ref_strand="+" ref_description="SGN-E483872 [cSTE-11-A4]">
      <seq>cgaaattctccttcttctctaagtgctctgtgtttttatccttcatcaatcttctgttaaaggaacaatgagtcgttcaagtaggacgatttatgttggtaatcttcctggtgatattcgtgagcgagaagtggaggatctgttctacaagtatggcccgatagcacatattgatctgaaaattccaccaagacccccgggttatgcttttgttgagtttgaagaggcacgcgatgctgaggatgctattcgtgggcgcgatggctatgattntgatgggcatcgtttgagggttgaacttgcacatggtgggcgtggtaactcatcgtcaaatgatcgttataatagtggcaataattagtggccataatggggggtggtcgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="118636" stop="36591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38613" g_stop="38552" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.806"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38551" i_stop="37767" i_length="785">
            <donor d_prob="0.980" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37766" g_stop="37678" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="151" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37677" i_stop="37591" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37590" g_stop="37525" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="217" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37524" i_stop="37428" i_length="97">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37427" g_stop="37353" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="292" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37352" i_stop="36975" i_length="378">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36974" g_stop="36887" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="385" r_length="93" r_score="0.818"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E483872" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E483872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38613" e_stop="38552"/>
          <exon e_start="37766" e_stop="37678"/>
          <exon e_start="37590" e_stop="37525"/>
          <exon e_start="37427" e_stop="37353"/>
          <exon e_start="36974" e_stop="36887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAAAATTCTCCTTCTCTAAGCGCTCTGTGTTTTCATCCTTCATCAATCTTCTAGTAAAGGTACGTTCCTTCGGTCTTTGTTAATGGAGGTCCGTTTAATCGGCATCTATCAAACGAAATAGCTAACAAGATCTGTTTTTTAATTTTAGTTTCTTCCGTTTTGCTCATTTTACCCAGCGAAAAATGTATTTCAATTCACTTAAAACGTTGTTCAGAGGCGGATCTAGCATAGAATCAGTCTACATACAGGAAAAATAGCAATAAAGTATCTATACATAATTTGTGTATGTAATTGTGTATCCATTATTAGTGTGTTCTGTATGCAGGAAATGTTTTTTTTCGTCTTGGAAAATAACCGGGTTTCTTACTTAGTTGTGTTCGGTAGGCAAGCGAAAAATATTAGTACAATTATTTGTATGTAATCTAGACAAATACTCTTGAGTTGGGTGGTGGGGATGGTGGCTAAGAGTGTGGTGGTGAAGATGAGGTTGGTTGGAGGGTGGGGAGAACACAATCAATGTGGAATTTTATTTGTTGAACCTGTTTTCACTACTTCCATTGAGGAAGTCAAATTTTTTTATTTTGAAGCAACTTAATTTCCTAGAGAAGATGTTTTCCATAAATTTTACCAACCATGAGAAAACTTGGAAACATTTTTCTGGAAAATGGTTTCATTCGTATCTAACACACCCTATATGTATGTTTGTTACTTTGTTTATGTATTTGTGTGCGAATCAAGTTGATTGCTCAAGTTGTGTTTTTGTGACTTAAGTTCTTCATGAATTTTATCCATTTTTGTTTCTCAGGTGGGTTTTGATTGTATTTTTTTGTTGAATTATTTTTAGGAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAGGTACTTGTATAACACTTAGCTTCATACTTTAGTTGGATGTCATTTACTATGCTCATAAACTTAAATGTGTGTGGCGTATAATTGTAGTATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAGGTAAGTTTTGACTGCATTGGCTAAAATGAATTTCATTGGATATTTCCTTCTCAATTGTTAACCTATTTTGACATTGTTTTGTTGGAACTAAACACAGTTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGGGTTAGTAAAATCTTAACAGCATATAGGATACACACACATGAATCAATTGTATCCTCTGTTTACTCTGAGAAGTATGATTGACTTGCATTTTTGAATCAGGGTTTCCAATTCTTGTATTAATTGCATTTCGTTGACCCTAGCATTTCACCTAAACCATTATGTTTCTTTATTAAATGCTTGTCCCAAATTAGTTGGGATCAGTTTTATAAATTGTCTGTAACCATCCTACTTTATCCAGGCGTATTTTTCTTTTCAAGCTTAGTTTGTCTTTCAAGGCAAATTAACATGTCTAATACATATAAGACACCTAAATGCTAAATAGTTTTCTTTTTGAGGTGCTTAAGATCTAAGCCTACTGAAACTGTTACATGTATGCAGGTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTC--A-GATCGTTATAATAGTGGCAATAA-TAGTGGCCATAAT-GGTGGTCGTAATA</genome_strand>
        <mrna_strand>CGAAATTCTCCTTCTTCTCTAAGTGCTCTGTGTTTTTATCCTTCATCAATCTTCTGTTAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAG.......................................................................................TATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCGGGTTATGCTTTTGTTGAG.................................................................................................TTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGATTNTGATGGGCATCGTTTGAGG..........................................................................................................................................................................................................................................................................................................................................................................................GTTGAACTTGCACATGGTGGGCGTGGTAACTCATCGTCAAATGATCGTTATAATAGTGGCAATAATTAGTGGCCATAATGGGGGGTGGTCGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337525" ref_strand="+" ref_description="SGN-E337525 [cTOE-11-L2]">
      <seq>tgttttcatccttcatcaatcttctagtaaaggaacaatgagtcgttcaagtaggacgatttatgttggtaatcttcctggtgatattcgtgagcgagaagtggaggatctgttctacaagtatggcccgatagcacatattgatctgaaaattccaccaagacccccaggttatgcttttgttgagtttgaagaggcacgcgatgctgaggatgctattcgtgggcgcgatggctatgaatttgatgggcatcgtttgagggttgagcttgcacatggtgggcgtggtaactcatcgtcagatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38883" stop="36632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38583" g_stop="38552" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38551" i_stop="37767" i_length="785">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37766" g_stop="37678" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="121" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37677" i_stop="37591" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37590" g_stop="37525" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="187" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37524" i_stop="37428" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37427" g_stop="37353" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="262" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37352" i_stop="36975" i_length="378">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36974" g_stop="36932" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="305" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E337525" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>305</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38583" e_stop="38552"/>
          <exon e_start="37766" e_stop="37678"/>
          <exon e_start="37590" e_stop="37525"/>
          <exon e_start="37427" e_stop="37353"/>
          <exon e_start="36974" e_stop="36932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTCATCCTTCATCAATCTTCTAGTAAAGGTACGTTCCTTCGGTCTTTGTTAATGGAGGTCCGTTTAATCGGCATCTATCAAACGAAATAGCTAACAAGATCTGTTTTTTAATTTTAGTTTCTTCCGTTTTGCTCATTTTACCCAGCGAAAAATGTATTTCAATTCACTTAAAACGTTGTTCAGAGGCGGATCTAGCATAGAATCAGTCTACATACAGGAAAAATAGCAATAAAGTATCTATACATAATTTGTGTATGTAATTGTGTATCCATTATTAGTGTGTTCTGTATGCAGGAAATGTTTTTTTTCGTCTTGGAAAATAACCGGGTTTCTTACTTAGTTGTGTTCGGTAGGCAAGCGAAAAATATTAGTACAATTATTTGTATGTAATCTAGACAAATACTCTTGAGTTGGGTGGTGGGGATGGTGGCTAAGAGTGTGGTGGTGAAGATGAGGTTGGTTGGAGGGTGGGGAGAACACAATCAATGTGGAATTTTATTTGTTGAACCTGTTTTCACTACTTCCATTGAGGAAGTCAAATTTTTTTATTTTGAAGCAACTTAATTTCCTAGAGAAGATGTTTTCCATAAATTTTACCAACCATGAGAAAACTTGGAAACATTTTTCTGGAAAATGGTTTCATTCGTATCTAACACACCCTATATGTATGTTTGTTACTTTGTTTATGTATTTGTGTGCGAATCAAGTTGATTGCTCAAGTTGTGTTTTTGTGACTTAAGTTCTTCATGAATTTTATCCATTTTTGTTTCTCAGGTGGGTTTTGATTGTATTTTTTTGTTGAATTATTTTTAGGAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAGGTACTTGTATAACACTTAGCTTCATACTTTAGTTGGATGTCATTTACTATGCTCATAAACTTAAATGTGTGTGGCGTATAATTGTAGTATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAGGTAAGTTTTGACTGCATTGGCTAAAATGAATTTCATTGGATATTTCCTTCTCAATTGTTAACCTATTTTGACATTGTTTTGTTGGAACTAAACACAGTTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGGGTTAGTAAAATCTTAACAGCATATAGGATACACACACATGAATCAATTGTATCCTCTGTTTACTCTGAGAAGTATGATTGACTTGCATTTTTGAATCAGGGTTTCCAATTCTTGTATTAATTGCATTTCGTTGACCCTAGCATTTCACCTAAACCATTATGTTTCTTTATTAAATGCTTGTCCCAAATTAGTTGGGATCAGTTTTATAAATTGTCTGTAACCATCCTACTTTATCCAGGCGTATTTTTCTTTTCAAGCTTAGTTTGTCTTTCAAGGCAAATTAACATGTCTAATACATATAAGACACCTAAATGCTAAATAGTTTTCTTTTTGAGGTGCTTAAGATCTAAGCCTACTGAAACTGTTACATGTATGCAGGTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTCAGATC</genome_strand>
        <mrna_strand>TGTTTTCATCCTTCATCAATCTTCTAGTAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAG.......................................................................................TATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAG.................................................................................................TTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGG..........................................................................................................................................................................................................................................................................................................................................................................................GTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTCAGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E594918" ref_strand="-" ref_description="SGN-E594918 [38180]">
      <seq>gaaattctccttcttctctaagtgctctgtgtttttatccttcatcaatcttctgttaaaggaacaatgagtcgttcaagtaggacgatttatgttggtaatcttcctggtgatattcgtgagcgagaagtggaggatctgttctacaagtatggcccgatagcacatattgatctgaaaattccaccaagacccccgggttatgcttttgttgagtttgaagaggcacgcgatgctgaggatgctattcgtgggcgcgatggctatgattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38909" stop="37070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38612" g_stop="38552" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.803"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38551" i_stop="37767" i_length="785">
            <donor d_prob="0.980" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37766" g_stop="37678" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="150" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37677" i_stop="37591" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37590" g_stop="37525" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="216" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37524" i_stop="37428" i_length="97">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37427" g_stop="37370" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="274" r_length="58" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E594918" ref_strand="-">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>274</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E594918" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="38612" e_stop="38552"/>
          <exon e_start="37766" e_stop="37678"/>
          <exon e_start="37590" e_stop="37525"/>
          <exon e_start="37427" e_stop="37370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAAATTCTCCTTCTCTAAGCGCTCTGTGTTTTCATCCTTCATCAATCTTCTAGTAAAGGTACGTTCCTTCGGTCTTTGTTAATGGAGGTCCGTTTAATCGGCATCTATCAAACGAAATAGCTAACAAGATCTGTTTTTTAATTTTAGTTTCTTCCGTTTTGCTCATTTTACCCAGCGAAAAATGTATTTCAATTCACTTAAAACGTTGTTCAGAGGCGGATCTAGCATAGAATCAGTCTACATACAGGAAAAATAGCAATAAAGTATCTATACATAATTTGTGTATGTAATTGTGTATCCATTATTAGTGTGTTCTGTATGCAGGAAATGTTTTTTTTCGTCTTGGAAAATAACCGGGTTTCTTACTTAGTTGTGTTCGGTAGGCAAGCGAAAAATATTAGTACAATTATTTGTATGTAATCTAGACAAATACTCTTGAGTTGGGTGGTGGGGATGGTGGCTAAGAGTGTGGTGGTGAAGATGAGGTTGGTTGGAGGGTGGGGAGAACACAATCAATGTGGAATTTTATTTGTTGAACCTGTTTTCACTACTTCCATTGAGGAAGTCAAATTTTTTTATTTTGAAGCAACTTAATTTCCTAGAGAAGATGTTTTCCATAAATTTTACCAACCATGAGAAAACTTGGAAACATTTTTCTGGAAAATGGTTTCATTCGTATCTAACACACCCTATATGTATGTTTGTTACTTTGTTTATGTATTTGTGTGCGAATCAAGTTGATTGCTCAAGTTGTGTTTTTGTGACTTAAGTTCTTCATGAATTTTATCCATTTTTGTTTCTCAGGTGGGTTTTGATTGTATTTTTTTGTTGAATTATTTTTAGGAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAGGTACTTGTATAACACTTAGCTTCATACTTTAGTTGGATGTCATTTACTATGCTCATAAACTTAAATGTGTGTGGCGTATAATTGTAGTATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAGGTAAGTTTTGACTGCATTGGCTAAAATGAATTTCATTGGATATTTCCTTCTCAATTGTTAACCTATTTTGACATTGTTTTGTTGGAACTAAACACAGTTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTG</genome_strand>
        <mrna_strand>GAAATTCTCCTTCTTCTCTAAGTGCTCTGTGTTTTTATCCTTCATCAATCTTCTGTTAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAG.......................................................................................TATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCGGGTTATGCTTTTGTTGAG.................................................................................................TTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357559" ref_strand="+" ref_description="SGN-E357559 [cTOS-23-F2]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48428" stop="129025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48728" g_stop="49050" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49051" i_stop="49593" i_length="543">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49594" g_stop="49673" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="402" r_length="80" r_score="0.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E357559" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48728" e_stop="49050"/>
          <exon e_start="49594" e_stop="49673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATACCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTACTTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAAACCCAAATCTTGAAAAATCCTAATCTCTTTGTTAATAATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAACTATGAGATTGATGATGTCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTTCGGTACCAAGATAGAATATGAGGATCGGAGTGTCACGTTCCGACACTAGGATAGAATATGGATCGGGTGCCACATTTCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGAATAGAATATGGATCGGGTGCCACGTTCGGTACCAGGATAGTATATGAGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGAGCGGAGTGTCACGTACCGACACGAGAGGAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACCTAAATCCCAAATGAGTATGATGAGGAGGCGTGAGTCCTCATTGATGAGCTTGGTGTTGTAACCAAGGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGTAAAAACCTAATCTCTTT-TTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAGATTAAGGGATCAGGTGTCACGAACCAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267149" ref_strand="+" ref_description="SGN-E267149 [cLEI-4-N6]">
      <seq>tactactcatttccaccacaaagttcccaaaatgtatatccaaaaagagaaaccttcactttctcttgctctttcattcattttcttgctcacattcttctttcccccaaaatcattattagtatcaagtactcaacaaattcatgttcacaaaaacatccaaattgcaaattcacattgccaagacacactttaccctaagctttgcatttccactctttcattaatcccaaatcttcataaaaaatcaattccagaaatcatatcttccaatgtcaatgtcacaatgaatgaagtcaaatcctctgctgaaaattgctctaacatacttcaccatatgtccaaattggaccctattgagaaaagggcattagatgattgtattgaacttttaggtgatacaactattgatgagttacaaacaactcttaatgatctttctactaaaaatagtagtaattcacctttaaagcactataatgatctacaaacacttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49576" stop="50674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49876" g_stop="50374" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E267149" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49876" e_stop="50374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTACTCATTTCCACCACAAAGTTCCCAAAATGTATATCCAAAAAGAGAAACCTTCACTTTCTCTTGCTCTTTCATTCATTTTCTTGCTCACATTCTTCTTTCCCCCAAAATCATTATTAGTATCAAGTACTCAACAAATTCATGTTCACAAAAACATCCAAATTGCAAATTCACATTGCCAAGACACACTTTACCCTAAGCTTTGCATTTCCACTCTTTCATTAATCCCAAATCTTCATAAAAAATCAATTCCAGAAATCATATCTTCCAATGTCAATGTCACAATGAATGAAGTCAAATCCTCTGCTGAAAATTGCTCTAACATACTTCACCATATGTCCAAATTGGACCCTATTGAGAAAAGGGCATTAGATGATTGTATTGAACTTTTAGGTGATACAACTATTGATGAGTTACAAACAACTCTTAATGATCTTTCTACTAAAAATAGTAGTAATTCACCTTTAAAGCACTATAATGATCTACAAACACTTCTT</genome_strand>
        <mrna_strand>TACTACTCATTTCCACCACAAAGTTCCCAAAATGTATATCCAAAAAGAGAAACCTTCACTTTCTCTTGCTCTTTCATTCATTTTCTTGCTCACATTCTTCTTTCCCCCAAAATCATTATTAGTATCAAGTACTCAACAAATTCATGTTCACAAAAACATCCAAATTGCAAATTCACATTGCCAAGACACACTTTACCCTAAGCTTTGCATTTCCACTCTTTCATTAATCCCAAATCTTCATAAAAAATCAATTCCAGAAATCATATCTTCCAATGTCAATGTCACAATGAATGAAGTCAAATCCTCTGCTGAAAATTGCTCTAACATACTTCACCATATGTCCAAATTGGACCCTATTGAGAAAAGGGCATTAGATGATTGTATTGAACTTTTAGGTGATACAACTATTGATGAGTTACAAACAACTCTTAATGATCTTTCTACTAAAAATAGTAGTAATTCACCTTTAAAGCACTATAATGATCTACAAACACTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358132" ref_strand="+" ref_description="SGN-E358132 [cLHT-23-L16]">
      <seq>caaaatgtatattcaaaaagagaaaccttcactttttcttgctctttcattcattttcttgctcacattcttctttcccccaaaatcattattagtatcaagtactcaacaaattcatgttcacaaaaacatccaaattgcaaattcacattgccaagacacactttaccctaagctttgcatttccactctttcattaatcccaaatcttcataaaaaatcaattccagaaatcatatcttccaatgtcaatgtcacaatgaatgaagtcaaatcctctgctgaaaattgctctaacatacttcaccatatgtccaaattggaccctattgagaaaagggcattagatgattgtattgaacttttaggtgatacaactattgatgagttacaaacaactcttaatgatctttctactaaaaatagtagtaattcacctttaaagcactacaatgatctacaaacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49603" stop="50670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49903" g_stop="50370" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E358132" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49903" e_stop="50370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATGTATATCCAAAAAGAGAAACCTTCACTTTCTCTTGCTCTTTCATTCATTTTCTTGCTCACATTCTTCTTTCCCCCAAAATCATTATTAGTATCAAGTACTCAACAAATTCATGTTCACAAAAACATCCAAATTGCAAATTCACATTGCCAAGACACACTTTACCCTAAGCTTTGCATTTCCACTCTTTCATTAATCCCAAATCTTCATAAAAAATCAATTCCAGAAATCATATCTTCCAATGTCAATGTCACAATGAATGAAGTCAAATCCTCTGCTGAAAATTGCTCTAACATACTTCACCATATGTCCAAATTGGACCCTATTGAGAAAAGGGCATTAGATGATTGTATTGAACTTTTAGGTGATACAACTATTGATGAGTTACAAACAACTCTTAATGATCTTTCTACTAAAAATAGTAGTAATTCACCTTTAAAGCACTATAATGATCTACAAACACT</genome_strand>
        <mrna_strand>CAAAATGTATATTCAAAAAGAGAAACCTTCACTTTTTCTTGCTCTTTCATTCATTTTCTTGCTCACATTCTTCTTTCCCCCAAAATCATTATTAGTATCAAGTACTCAACAAATTCATGTTCACAAAAACATCCAAATTGCAAATTCACATTGCCAAGACACACTTTACCCTAAGCTTTGCATTTCCACTCTTTCATTAATCCCAAATCTTCATAAAAAATCAATTCCAGAAATCATATCTTCCAATGTCAATGTCACAATGAATGAAGTCAAATCCTCTGCTGAAAATTGCTCTAACATACTTCACCATATGTCCAAATTGGACCCTATTGAGAAAAGGGCATTAGATGATTGTATTGAACTTTTAGGTGATACAACTATTGATGAGTTACAAACAACTCTTAATGATCTTTCTACTAAAAATAGTAGTAATTCACCTTTAAAGCACTACAATGATCTACAAACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356044" ref_strand="+" ref_description="SGN-E356044 [cLHT-21-L24]">
      <seq>aaaatgtatatccaaaaagagaaaccttcactttttcttgctctttcattcattttcttgctcacattcttctttcccccaaaatcattattagtatcaagtactcaacaaattcatgttcacaaaaacatccaaattgcaaattcacattgccaagacacactttaccctaagctttgcatttccactctttcattaatcccaaatcttcataaaaaatcaattccagaaatcatatcttccaatgtcaatgtcacaatgaatgaagtcaaatcctctgctgaaaattgctctaacatacttcaccatatgtccaaattggaccctattgagaaaagggcattagatgattgtattgaacttttaggtgatacaactattgatgagttacaaacaactcttaatgatctttctactaaaaataggagtaattcacctttaaagcactacaatgatctacaaacactttctgatggtgcaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49604" stop="50687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49904" g_stop="50387" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E356044" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49904" e_stop="50387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTATATCCAAAAAGAGAAACCTTCACTTTCTCTTGCTCTTTCATTCATTTTCTTGCTCACATTCTTCTTTCCCCCAAAATCATTATTAGTATCAAGTACTCAACAAATTCATGTTCACAAAAACATCCAAATTGCAAATTCACATTGCCAAGACACACTTTACCCTAAGCTTTGCATTTCCACTCTTTCATTAATCCCAAATCTTCATAAAAAATCAATTCCAGAAATCATATCTTCCAATGTCAATGTCACAATGAATGAAGTCAAATCCTCTGCTGAAAATTGCTCTAACATACTTCACCATATGTCCAAATTGGACCCTATTGAGAAAAGGGCATTAGATGATTGTATTGAACTTTTAGGTGATACAACTATTGATGAGTTACAAACAACTCTTAATGATCTTTCTACTAAAAATAGTAGTAATTCACCTTTAAAGCACTATAATGATCTACAAACACTTCTTAGTGGTGCAATGA</genome_strand>
        <mrna_strand>AAAATGTATATCCAAAAAGAGAAACCTTCACTTTTTCTTGCTCTTTCATTCATTTTCTTGCTCACATTCTTCTTTCCCCCAAAATCATTATTAGTATCAAGTACTCAACAAATTCATGTTCACAAAAACATCCAAATTGCAAATTCACATTGCCAAGACACACTTTACCCTAAGCTTTGCATTTCCACTCTTTCATTAATCCCAAATCTTCATAAAAAATCAATTCCAGAAATCATATCTTCCAATGTCAATGTCACAATGAATGAAGTCAAATCCTCTGCTGAAAATTGCTCTAACATACTTCACCATATGTCCAAATTGGACCCTATTGAGAAAAGGGCATTAGATGATTGTATTGAACTTTTAGGTGATACAACTATTGATGAGTTACAAACAACTCTTAATGATCTTTCTACTAAAAATAGGAGTAATTCACCTTTAAAGCACTACAATGATCTACAAACACTTTCTGATGGTGCAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365937" ref_strand="+" ref_description="SGN-E365937 [cLPT-11-H2]">
      <seq>aatgtatatccaaaaagagaaaccttcacttcctcttgctctttcattcattttcttgctcacattcttctttcccccaaaatcattattagtatcaagtactcaacaaattgatgttcacaaaaacatccaaattgcaaattcacattgccaagacacactttaccctaagctttgcatttccactctttcattaatcccaaatcttcataaaaaatcaattccagaaatcatatcttccaatgtcaatgtcactatgaatgaagtcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49606" stop="50476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49906" g_stop="50176" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E365937" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>271</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49906" e_stop="50176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTATATCCAAAAAGAGAAACCTTCACTTTCTCTTGCTCTTTCATTCATTTTCTTGCTCACATTCTTCTTTCCCCCAAAATCATTATTAGTATCAAGTACTCAACAAATTCATGTTCACAAAAACATCCAAATTGCAAATTCACATTGCCAAGACACACTTTACCCTAAGCTTTGCATTTCCACTCTTTCATTAATCCCAAATCTTCATAAAAAATCAATTCCAGAAATCATATCTTCCAATGTCAATGTCACAATGAATGAAGTCAAA</genome_strand>
        <mrna_strand>AATGTATATCCAAAAAGAGAAACCTTCACTTCCTCTTGCTCTTTCATTCATTTTCTTGCTCACATTCTTCTTTCCCCCAAAATCATTATTAGTATCAAGTACTCAACAAATTGATGTTCACAAAAACATCCAAATTGCAAATTCACATTGCCAAGACACACTTTACCCTAAGCTTTGCATTTCCACTCTTTCATTAATCCCAAATCTTCATAAAAAATCAATTCCAGAAATCATATCTTCCAATGTCAATGTCACTATGAATGAAGTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366515" ref_strand="+" ref_description="SGN-E366515 [cLPT-13-H4]">
      <seq>tccaaaaagagaaaccttcacttcctcttgctctttcattcattttcttgctcacattcttctttcccccaaaatcattattagtatcaagtactcaacaaattgatgttcacaaaaacatccaaattgcaaattcacattgccaagacacactttaccctaagctttgcatttccactctttcattaatcccaaatcttcataaaaaatcaattccagaaatcatatcttccaatgtcaatgtcactatgaatgaagtcaaatcctctgctgaaaattgctctaacatacttcaccatatgtccaaattggaccctattgagaaaagggcattagatgattgtattgaacttttaggtgatacaactattgatgagttacaaacaactcttaatgatctttctactaaaaatagtagtaattcacctttaaagcactataatgatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49614" stop="50662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49914" g_stop="50362" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E366515" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49914" e_stop="50362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAAAAGAGAAACCTTCACTTTCTCTTGCTCTTTCATTCATTTTCTTGCTCACATTCTTCTTTCCCCCAAAATCATTATTAGTATCAAGTACTCAACAAATTCATGTTCACAAAAACATCCAAATTGCAAATTCACATTGCCAAGACACACTTTACCCTAAGCTTTGCATTTCCACTCTTTCATTAATCCCAAATCTTCATAAAAAATCAATTCCAGAAATCATATCTTCCAATGTCAATGTCACAATGAATGAAGTCAAATCCTCTGCTGAAAATTGCTCTAACATACTTCACCATATGTCCAAATTGGACCCTATTGAGAAAAGGGCATTAGATGATTGTATTGAACTTTTAGGTGATACAACTATTGATGAGTTACAAACAACTCTTAATGATCTTTCTACTAAAAATAGTAGTAATTCACCTTTAAAGCACTATAATGATCTA</genome_strand>
        <mrna_strand>TCCAAAAAGAGAAACCTTCACTTCCTCTTGCTCTTTCATTCATTTTCTTGCTCACATTCTTCTTTCCCCCAAAATCATTATTAGTATCAAGTACTCAACAAATTGATGTTCACAAAAACATCCAAATTGCAAATTCACATTGCCAAGACACACTTTACCCTAAGCTTTGCATTTCCACTCTTTCATTAATCCCAAATCTTCATAAAAAATCAATTCCAGAAATCATATCTTCCAATGTCAATGTCACTATGAATGAAGTCAAATCCTCTGCTGAAAATTGCTCTAACATACTTCACCATATGTCCAAATTGGACCCTATTGAGAAAAGGGCATTAGATGATTGTATTGAACTTTTAGGTGATACAACTATTGATGAGTTACAAACAACTCTTAATGATCTTTCTACTAAAAATAGTAGTAATTCACCTTTAAAGCACTATAATGATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689401" ref_strand="+" ref_description="SGN-E689401 [t3_tus_84_J03]">
      <seq>caaaaagagaaaccttcactttctcttgctctttcattcattttcttgctcacattcttctttcccccaaaatcattattagtatcaagtactcaacaaattcatgttcacaaaaacatccaaattgcaaattcacattgccaagacacactttaccctaagctttgcatttccactctttcattaatcccaaatcttcataaaaaatcaattccagaaatcatatcttccaatgtcaatgtcacaatgaatgaagtcaaatcctctgctgaaaattgctctaacatacttcaccatatgtccaaattggaccctattgagaaaagggcattagatgattgtattgaacttttaggtgatacaactattgatgagttacaaacaactcttaatgatctttctactaaaaatagtagtaattcacctttaaagcactataatgatctacaaacacttcttagtggtgcaatgacaaatcaagatacttgtcttgaaggaattcacaaaagtaaacacaaattgagtcaatacattgagaagaacttgcatacaatatctcatcatatgaacaactctcttgccatgcttaagaagttaaagacagggtcgtctcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49616" stop="50830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49916" g_stop="50530" g_length="615"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="615" r_length="615" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E689401" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49916" e_stop="50530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAGAGAAACCTTCACTTTCTCTTGCTCTTTCATTCATTTTCTTGCTCACATTCTTCTTTCCCCCAAAATCATTATTAGTATCAAGTACTCAACAAATTCATGTTCACAAAAACATCCAAATTGCAAATTCACATTGCCAAGACACACTTTACCCTAAGCTTTGCATTTCCACTCTTTCATTAATCCCAAATCTTCATAAAAAATCAATTCCAGAAATCATATCTTCCAATGTCAATGTCACAATGAATGAAGTCAAATCCTCTGCTGAAAATTGCTCTAACATACTTCACCATATGTCCAAATTGGACCCTATTGAGAAAAGGGCATTAGATGATTGTATTGAACTTTTAGGTGATACAACTATTGATGAGTTACAAACAACTCTTAATGATCTTTCTACTAAAAATAGTAGTAATTCACCTTTAAAGCACTATAATGATCTACAAACACTTCTTAGTGGTGCAATGACAAATCAAGATACTTGTCTTGAAGGAATTCACAAAAGTAAACACAAATTGAGTCAATACATTGAGAAGAACTTGCATACAATATCTCATCATGTGAGCAACTCTCTTGCCATGCTTAAGAAGTTAAAGACAGGGTCGTCTCAA</genome_strand>
        <mrna_strand>CAAAAAGAGAAACCTTCACTTTCTCTTGCTCTTTCATTCATTTTCTTGCTCACATTCTTCTTTCCCCCAAAATCATTATTAGTATCAAGTACTCAACAAATTCATGTTCACAAAAACATCCAAATTGCAAATTCACATTGCCAAGACACACTTTACCCTAAGCTTTGCATTTCCACTCTTTCATTAATCCCAAATCTTCATAAAAAATCAATTCCAGAAATCATATCTTCCAATGTCAATGTCACAATGAATGAAGTCAAATCCTCTGCTGAAAATTGCTCTAACATACTTCACCATATGTCCAAATTGGACCCTATTGAGAAAAGGGCATTAGATGATTGTATTGAACTTTTAGGTGATACAACTATTGATGAGTTACAAACAACTCTTAATGATCTTTCTACTAAAAATAGTAGTAATTCACCTTTAAAGCACTATAATGATCTACAAACACTTCTTAGTGGTGCAATGACAAATCAAGATACTTGTCTTGAAGGAATTCACAAAAGTAAACACAAATTGAGTCAATACATTGAGAAGAACTTGCATACAATATCTCATCATATGAACAACTCTCTTGCCATGCTTAAGAAGTTAAAGACAGGGTCGTCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333386" ref_strand="+" ref_description="SGN-E333386 [cTOD-20-M6]">
      <seq>aaaaagagaaaccttcactttctcttgctctttcattcattttcttgctcacattcttctttcccccaaaatcattattagtatcaagtactcaacaaattcatgttcacaaaaacatccaaattgcaaattcacattgccaagacacactttaccctaagctttgcatttccactctttcattaatcccaaatcttcataaaaaatcaattccagaaatcatatcttccaatgtcaatgtcacaatgaatgaagtcaaatcctctgctgaaaattgctctaacatacttcaccatatgtccaaattggaccctattgagaaaagggcattagatgattgtattgaacttttaggtgatacaactattgatgagttacaaacaactcttaatgatctttctactaaaaatagtagtaattcacctttaaagcactataatgatctacaaacacttcttagtggtgcaatgacaaatcaagatacttgtcttgaaggaattcacaaaagtaaacacaaattgagtcaatacattgagaagaacttgcatancatatctcatcatatgagcaactctcttgccatgncttagaaagtaagacaggttcgtctcaagggtcgtcatcaaactctaatgaagtcttccccgagtacggcaccatgaagaaatggtacccaaaatggttgcaaaaaaaggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49617" stop="51793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49917" g_stop="50532" g_length="616"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="615" r_length="615" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50533" i_stop="51411" i_length="879">
            <donor d_prob="0.972" d_score="0.86"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51412" g_stop="51493" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="697" r_length="82" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E333386" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49917" e_stop="50532"/>
          <exon e_start="51412" e_stop="51493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGAGAAACCTTCACTTTCTCTTGCTCTTTCATTCATTTTCTTGCTCACATTCTTCTTTCCCCCAAAATCATTATTAGTATCAAGTACTCAACAAATTCATGTTCACAAAAACATCCAAATTGCAAATTCACATTGCCAAGACACACTTTACCCTAAGCTTTGCATTTCCACTCTTTCATTAATCCCAAATCTTCATAAAAAATCAATTCCAGAAATCATATCTTCCAATGTCAATGTCACAATGAATGAAGTCAAATCCTCTGCTGAAAATTGCTCTAACATACTTCACCATATGTCCAAATTGGACCCTATTGAGAAAAGGGCATTAGATGATTGTATTGAACTTTTAGGTGATACAACTATTGATGAGTTACAAACAACTCTTAATGATCTTTCTACTAAAAATAGTAGTAATTCACCTTTAAAGCACTATAATGATCTACAAACACTTCTTAGTGGTGCAATGACAAATCAAGATACTTGTCTTGAAGGAATTCACAAAAGTAAACACAAATTGAGTCAATACATTGAGAAGAACTTGCATACAATATCTCATCATGTGAGCAACTCTCTTGCCATGCTTAAGAAGTTAAAGACAGGGTCGTCTCAAGGGTAAGGCCACTAAAACCTCTATTTTCGGCCCTCAAAATATTGAATTGATTCAAAAAAAATAGTATATTCCTTCTGTTTCATTTTATTTGACATATTTATTATAACATATTTTTGAAGCCATAACACATTTTTTACTCTAGAAAACACTTTTTAACTTTAAATTTTTCGTCTTTTTCTATATTATCACACAAGAGATGCTTTAGACAAGTATCTAAATTAAACTCGATCTTTTTTTAATTCTTAAACTTTATTTTTTGACATCATACAAAATGAAACTAGTGGAGTTTTCTCATATACAACAAGTATAATTTAACTTGACAACCATAAGATTTAAATGTTTTTTTGTTTTTTTTTAAAATTATGTATCTTGTCAAACTAATACACATGAATTAAAACAAATATGGTATAAGTTTTTTCTTTTTCTTTTAAGGAAAAATGTATAAGTATCTCCTCAACTTGTGCCCGAAATCTCAGAGACACACTTATATTATAGTAAGGTTTTATTACCCCCTAAACTTATTTTATAAGTAATTTTCTACCCCTTTTTGGCGCACTAGCTTGAAAAAAAATTAATGGTATAAAATTATTAATAAAATAAGTTCAGGGGTAATAGGCTTTAGTATAGTATAAGTGTGTCTTTAAAATTTCGGGCATAGATTGAGGGGGTACTTGTGCATTATCCCCTTTTTTTTAAAAGAATTTGTTGAAGTTTAATTTCGTAGCGATGAGTGAGTAAATTACTTTAAATTTCTCTACATAATTAAATAGTTTATCTTTCTCCTTTATGTACAATCATTTTAAATAAGTTACTTTTTTTTTGTCTTCATTTATTTAATCATGAATAAATTTAAAAGGCCTCTTATTATAATATAATTTTAGGTCGTCATCAAACTCTAATGAAGTCTTCCCCGAGTACGGCACCATGAAGAATGGGTACCCAAAATGGTTGCAAAAAAAGGAC</genome_strand>
        <mrna_strand>AAAAAGAGAAACCTTCACTTTCTCTTGCTCTTTCATTCATTTTCTTGCTCACATTCTTCTTTCCCCCAAAATCATTATTAGTATCAAGTACTCAACAAATTCATGTTCACAAAAACATCCAAATTGCAAATTCACATTGCCAAGACACACTTTACCCTAAGCTTTGCATTTCCACTCTTTCATTAATCCCAAATCTTCATAAAAAATCAATTCCAGAAATCATATCTTCCAATGTCAATGTCACAATGAATGAAGTCAAATCCTCTGCTGAAAATTGCTCTAACATACTTCACCATATGTCCAAATTGGACCCTATTGAGAAAAGGGCATTAGATGATTGTATTGAACTTTTAGGTGATACAACTATTGATGAGTTACAAACAACTCTTAATGATCTTTCTACTAAAAATAGTAGTAATTCACCTTTAAAGCACTATAATGATCTACAAACACTTCTTAGTGGTGCAATGACAAATCAAGATACTTGTCTTGAAGGAATTCACAAAAGTAAACACAAATTGAGTCAATACATTGAGAAGAACTTGCATANCATATCTCATCATATGAGCAACTCTCTTGCCATGNCTTAGAAAGT-AAGACAGGTTCGTCTCAAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTCATCAAACTCTAATGAAGTCTTCCCCGAGTACGGCACCATGAAGAAATGGTACCCAAAATGGTTGCAAAAAAAGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449513" ref_strand="+" ref_description="SGN-E449513 [cSTS-6-P21]">
      <seq>aaaaaaagaaaccttcactttttcttgctctttcatccattttcttgctcacattcttctttcccccaaaatcattattagtatcaagtactcatcaaattcatgttcacaaaaacatccaaattgcaaattcacattgccaagacacactttacccccaactttgcatttccactctttcattaatcccaaatcttcaccaaaaatcaattccagaaatcatttcttccaatgttaatgtcactatgaatgaagtcaaatcctctgctgaaaattgctctaacatacttcaccatgtgtccaaattggaccctattgaaaaaagggcattagatgattgtattgaacttttaggtgatactactattgatgagttacaaacaactctttatgatctttctactaaaaatagtagtaattcacctttaaagcactataatgatctacaaacacttcttagtggtgcaatgacaaatcaagatacttgtcttaatggaatttacaatagtaaacacaatttgagtcaatacattgagaagaacttgcataccatatctcaacatgtgagcaactctcttgtcatactcaagaagttaaagatagggtcggctcaaggatcgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49617" stop="50834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49917" g_stop="50532" g_length="616"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E449513" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49917" e_stop="50532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGAGAAACCTTCACTTTCTCTTGCTCTTTCATTCATTTTCTTGCTCACATTCTTCTTTCCCCCAAAATCATTATTAGTATCAAGTACTCAACAAATTCATGTTCACAAAAACATCCAAATTGCAAATTCACATTGCCAAGACACACTTTACCCTAAGCTTTGCATTTCCACTCTTTCATTAATCCCAAATCTTCATAAAAAATCAATTCCAGAAATCATATCTTCCAATGTCAATGTCACAATGAATGAAGTCAAATCCTCTGCTGAAAATTGCTCTAACATACTTCACCATATGTCCAAATTGGACCCTATTGAGAAAAGGGCATTAGATGATTGTATTGAACTTTTAGGTGATACAACTATTGATGAGTTACAAACAACTCTTAATGATCTTTCTACTAAAAATAGTAGTAATTCACCTTTAAAGCACTATAATGATCTACAAACACTTCTTAGTGGTGCAATGACAAATCAAGATACTTGTCTTGAAGGAATTCACAAAAGTAAACACAAATTGAGTCAATACATTGAGAAGAACTTGCATACAATATCTCATCATGTGAGCAACTCTCTTGCCATGCTTAAGAAGTTAAAGACAGGGTCGTCTCAAGG</genome_strand>
        <mrna_strand>AAAAAAAGAAACCTTCACTTTTTCTTGCTCTTTCATCCATTTTCTTGCTCACATTCTTCTTTCCCCCAAAATCATTATTAGTATCAAGTACTCATCAAATTCATGTTCACAAAAACATCCAAATTGCAAATTCACATTGCCAAGACACACTTTACCCCCAACTTTGCATTTCCACTCTTTCATTAATCCCAAATCTTCACCAAAAATCAATTCCAGAAATCATTTCTTCCAATGTTAATGTCACTATGAATGAAGTCAAATCCTCTGCTGAAAATTGCTCTAACATACTTCACCATGTGTCCAAATTGGACCCTATTGAAAAAAGGGCATTAGATGATTGTATTGAACTTTTAGGTGATACTACTATTGATGAGTTACAAACAACTCTTTATGATCTTTCTACTAAAAATAGTAGTAATTCACCTTTAAAGCACTATAATGATCTACAAACACTTCTTAGTGGTGCAATGACAAATCAAGATACTTGTCTTAATGGAATTTACAATAGTAAACACAATTTGAGTCAATACATTGAGAAGAACTTGCATACCATATCTCAACATGTGAGCAACTCTCTTGTCATACTCAAGAAGTTAAAGATAGGGTCGGCTCAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310514" ref_strand="+" ref_description="SGN-E310514 [cTOA-9-O9]">
      <seq>aaaaagagaaaccttcactttctcttgctctttcattcattttcttgctcacattcttctttcccccaaaatcattattagtatcaagtactcaacaaattcatgttcacaaaaacatccaaattgcaaattcacattgccaagacacactttaccctaagctttgcatttccactctttcattaatcccaaatcttcataaaaaatcaattccagaaatcatatcttccaatgtcaatgtcacaatgaatgaagtcaaatcctctgctgaaaattgctctaacatacttcaccatatgtccaaattggaccctattgagaaaagggcattagatgattgtattgaacttttaggtgatacaactattgatgagttacaaacaactcttaatgatctttctactaaaaatagtagtaattcacctttaaagcactataatgatctacaaacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49617" stop="50670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49917" g_stop="50370" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E310514" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49917" e_stop="50370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGAGAAACCTTCACTTTCTCTTGCTCTTTCATTCATTTTCTTGCTCACATTCTTCTTTCCCCCAAAATCATTATTAGTATCAAGTACTCAACAAATTCATGTTCACAAAAACATCCAAATTGCAAATTCACATTGCCAAGACACACTTTACCCTAAGCTTTGCATTTCCACTCTTTCATTAATCCCAAATCTTCATAAAAAATCAATTCCAGAAATCATATCTTCCAATGTCAATGTCACAATGAATGAAGTCAAATCCTCTGCTGAAAATTGCTCTAACATACTTCACCATATGTCCAAATTGGACCCTATTGAGAAAAGGGCATTAGATGATTGTATTGAACTTTTAGGTGATACAACTATTGATGAGTTACAAACAACTCTTAATGATCTTTCTACTAAAAATAGTAGTAATTCACCTTTAAAGCACTATAATGATCTACAAACACT</genome_strand>
        <mrna_strand>AAAAAGAGAAACCTTCACTTTCTCTTGCTCTTTCATTCATTTTCTTGCTCACATTCTTCTTTCCCCCAAAATCATTATTAGTATCAAGTACTCAACAAATTCATGTTCACAAAAACATCCAAATTGCAAATTCACATTGCCAAGACACACTTTACCCTAAGCTTTGCATTTCCACTCTTTCATTAATCCCAAATCTTCATAAAAAATCAATTCCAGAAATCATATCTTCCAATGTCAATGTCACAATGAATGAAGTCAAATCCTCTGCTGAAAATTGCTCTAACATACTTCACCATATGTCCAAATTGGACCCTATTGAGAAAAGGGCATTAGATGATTGTATTGAACTTTTAGGTGATACAACTATTGATGAGTTACAAACAACTCTTAATGATCTTTCTACTAAAAATAGTAGTAATTCACCTTTAAAGCACTATAATGATCTACAAACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468858" ref_strand="+" ref_description="SGN-E468858 [cSTB-6-O8]">
      <seq>aagaaaccttcactttttcttgctctttcatccattttcttgctcacattcttctttcccccaaaatcattattagtatcaagtactcatcaaattcatgttcacaaaaacatccaaattgcaaattcacattggcaagacacactttacccccaactttgcatttccactctttcattaatcccaaatcttcaccaaaaatcaattccagaaatcatttcttccaatgttaatgtcactatgaatgaagtcaaatcctctggtgaaaatcgctctaacatacttcaccatgtgtccaaattggaccctattgaaaaaagggcattagatgattgtattgaacttttaggtgatactactattgatgagttacaaacaactctttatgatctttctactaaaaatagtagttattcacctttaaagcactataatgatctacaaacacttcttagtggtgcaatgacaaatcaagatacttgtcttaatggaatttacaatagttaacacaatttgagtcaatacattgagaagaacttgcataccatatctcaacatgtgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49623" stop="50784"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49922" g_stop="50484" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="563" r_length="563" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E468858" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E468858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49922" e_stop="50484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAACCTTCACTTTCTCTTGCTCTTTCATTCATTTTCTTGCTCACATTCTTCTTTCCCCCAAAATCATTATTAGTATCAAGTACTCAACAAATTCATGTTCACAAAAACATCCAAATTGCAAATTCACATTGCCAAGACACACTTTACCCTAAGCTTTGCATTTCCACTCTTTCATTAATCCCAAATCTTCATAAAAAATCAATTCCAGAAATCATATCTTCCAATGTCAATGTCACAATGAATGAAGTCAAATCCTCTGCTGAAAATTGCTCTAACATACTTCACCATATGTCCAAATTGGACCCTATTGAGAAAAGGGCATTAGATGATTGTATTGAACTTTTAGGTGATACAACTATTGATGAGTTACAAACAACTCTTAATGATCTTTCTACTAAAAATAGTAGTAATTCACCTTTAAAGCACTATAATGATCTACAAACACTTCTTAGTGGTGCAATGACAAATCAAGATACTTGTCTTGAAGGAATTCACAAAAGTAAACACAAATTGAGTCAATACATTGAGAAGAACTTGCATACAATATCTCATCATGTGAG</genome_strand>
        <mrna_strand>AAGAAACCTTCACTTTTTCTTGCTCTTTCATCCATTTTCTTGCTCACATTCTTCTTTCCCCCAAAATCATTATTAGTATCAAGTACTCATCAAATTCATGTTCACAAAAACATCCAAATTGCAAATTCACATTGGCAAGACACACTTTACCCCCAACTTTGCATTTCCACTCTTTCATTAATCCCAAATCTTCACCAAAAATCAATTCCAGAAATCATTTCTTCCAATGTTAATGTCACTATGAATGAAGTCAAATCCTCTGGTGAAAATCGCTCTAACATACTTCACCATGTGTCCAAATTGGACCCTATTGAAAAAAGGGCATTAGATGATTGTATTGAACTTTTAGGTGATACTACTATTGATGAGTTACAAACAACTCTTTATGATCTTTCTACTAAAAATAGTAGTTATTCACCTTTAAAGCACTATAATGATCTACAAACACTTCTTAGTGGTGCAATGACAAATCAAGATACTTGTCTTAATGGAATTTACAATAGTTAACACAATTTGAGTCAATACATTGAGAAGAACTTGCATACCATATCTCAACATGTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266092" ref_strand="+" ref_description="SGN-E266092 [cLEI-6-B5]">
      <seq>tctcttgctctttcattcattttcttgctcacattcttctttcccccaaaatcattattagtatcaagtactcaacaaattcatgttcacaaaaacatccaaattgcaaattcacattgccaagacacactttaccctaagctttgcatttccactctttcattaatcccaaatcttcataaaaaatcaattccagaaatcatatcttccaatgtcaatgtcacaatgaatgaagtcaaatcctctgctgaaaattgctctaacatacttcaccatatgtccaaattggaccctattgagaaaagggcattagatgattgtattgaacttttaggtgatacaactattgatgagttacaaacaactcttaatgatctttctactaaaaatagtagtaattcacctttaaagcactataatgatctacaaacacttctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49637" stop="50675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49937" g_stop="50375" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E266092" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49937" e_stop="50375"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTGCTCTTTCATTCATTTTCTTGCTCACATTCTTCTTTCCCCCAAAATCATTATTAGTATCAAGTACTCAACAAATTCATGTTCACAAAAACATCCAAATTGCAAATTCACATTGCCAAGACACACTTTACCCTAAGCTTTGCATTTCCACTCTTTCATTAATCCCAAATCTTCATAAAAAATCAATTCCAGAAATCATATCTTCCAATGTCAATGTCACAATGAATGAAGTCAAATCCTCTGCTGAAAATTGCTCTAACATACTTCACCATATGTCCAAATTGGACCCTATTGAGAAAAGGGCATTAGATGATTGTATTGAACTTTTAGGTGATACAACTATTGATGAGTTACAAACAACTCTTAATGATCTTTCTACTAAAAATAGTAGTAATTCACCTTTAAAGCACTATAATGATCTACAAACACTTCTTA</genome_strand>
        <mrna_strand>TCTCTTGCTCTTTCATTCATTTTCTTGCTCACATTCTTCTTTCCCCCAAAATCATTATTAGTATCAAGTACTCAACAAATTCATGTTCACAAAAACATCCAAATTGCAAATTCACATTGCCAAGACACACTTTACCCTAAGCTTTGCATTTCCACTCTTTCATTAATCCCAAATCTTCATAAAAAATCAATTCCAGAAATCATATCTTCCAATGTCAATGTCACAATGAATGAAGTCAAATCCTCTGCTGAAAATTGCTCTAACATACTTCACCATATGTCCAAATTGGACCCTATTGAGAAAAGGGCATTAGATGATTGTATTGAACTTTTAGGTGATACAACTATTGATGAGTTACAAACAACTCTTAATGATCTTTCTACTAAAAATAGTAGTAATTCACCTTTAAAGCACTATAATGATCTACAAACACTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483688" ref_strand="+" ref_description="SGN-E483688 [cSTE-10-D13]">
      <seq>caaatcttcaccaaaaatcaattccagaaatcatttcttccaatgttaatgtcactatgaatgaagtcaaatcctctgctgaaaattgctctaacatacttcaccatgtgtccaaattggaccctattgaaaaaagggcattagatgattgtattgaacttttaggtgatgctactattgatgagttacaaacaactctttatgatctttctactaaaaatagtagtaattcacctttaaagcactataatgatctacaaacacttcttagtggtgcaatgacaaatcaagatacttgtcttaatggaatttacaatagtaaacacaatttgagtcaatacattgagaagaacttgcataccatctcaacatgtgagcaactctcttgtcatgctcaagaagttaaagacagggtcggctcaagggtcgtcatcaaactctaatgaagttttcccagaatacgggaccatgaagaatgggtacccgaaatggttgaaaaaaaaaggacaggacacttttacaagctccagtgaaccaaattaagttcgatttggttgtggctaaggatggtagtggtaattttactactattaatgcagcattaagtgccgcaccaaattctagtagtacaagatttgtgatttacattaaggcggggaacgtatttcgaatatattgatgtcgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49806" stop="51970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50106" g_stop="50532" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50533" i_stop="51411" i_length="879">
            <donor d_prob="0.972" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51412" g_stop="51670" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="686" r_length="261" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E483688" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E483688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50106" e_stop="50532"/>
          <exon e_start="51412" e_stop="51670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATCTTCATAAAAAATCAATTCCAGAAATCATATCTTCCAATGTCAATGTCACAATGAATGAAGTCAAATCCTCTGCTGAAAATTGCTCTAACATACTTCACCATATGTCCAAATTGGACCCTATTGAGAAAAGGGCATTAGATGATTGTATTGAACTTTTAGGTGATACAACTATTGATGAGTTACAAACAACTCTTAATGATCTTTCTACTAAAAATAGTAGTAATTCACCTTTAAAGCACTATAATGATCTACAAACACTTCTTAGTGGTGCAATGACAAATCAAGATACTTGTCTTGAAGGAATTCACAAAAGTAAACACAAATTGAGTCAATACATTGAGAAGAACTTGCATACAATATCTCATCATGTGAGCAACTCTCTTGCCATGCTTAAGAAGTTAAAGACAGGGTCGTCTCAAGGGTAAGGCCACTAAAACCTCTATTTTCGGCCCTCAAAATATTGAATTGATTCAAAAAAAATAGTATATTCCTTCTGTTTCATTTTATTTGACATATTTATTATAACATATTTTTGAAGCCATAACACATTTTTTACTCTAGAAAACACTTTTTAACTTTAAATTTTTCGTCTTTTTCTATATTATCACACAAGAGATGCTTTAGACAAGTATCTAAATTAAACTCGATCTTTTTTTAATTCTTAAACTTTATTTTTTGACATCATACAAAATGAAACTAGTGGAGTTTTCTCATATACAACAAGTATAATTTAACTTGACAACCATAAGATTTAAATGTTTTTTTGTTTTTTTTTAAAATTATGTATCTTGTCAAACTAATACACATGAATTAAAACAAATATGGTATAAGTTTTTTCTTTTTCTTTTAAGGAAAAATGTATAAGTATCTCCTCAACTTGTGCCCGAAATCTCAGAGACACACTTATATTATAGTAAGGTTTTATTACCCCCTAAACTTATTTTATAAGTAATTTTCTACCCCTTTTTGGCGCACTAGCTTGAAAAAAAATTAATGGTATAAAATTATTAATAAAATAAGTTCAGGGGTAATAGGCTTTAGTATAGTATAAGTGTGTCTTTAAAATTTCGGGCATAGATTGAGGGGGTACTTGTGCATTATCCCCTTTTTTTTAAAAGAATTTGTTGAAGTTTAATTTCGTAGCGATGAGTGAGTAAATTACTTTAAATTTCTCTACATAATTAAATAGTTTATCTTTCTCCTTTATGTACAATCATTTTAAATAAGTTACTTTTTTTTTGTCTTCATTTATTTAATCATGAATAAATTTAAAAGGCCTCTTATTATAATATAATTTTAGGTCGTCATCAAACTCTAATGAAGTCTTCCCCGAGTACGGCACCATGAAGAATGGGTACCCAAAATGGTTG-CAAAAAAAGGACCGGACCCTTTTACAAGCTCCGTTGAACCAAATTAAGTTCAATTTGGTTGTGGCTAAAGATGGTAGTGGTAATTTTACTACTATTAATGCAGCGTTAAGTGCTGCACCAAATTCTTCTAGTACAAGATTTGTGATTTACATCAAGGC-GGGAACGTATTTCGAATATATTGACGTAGAA</genome_strand>
        <mrna_strand>CAAATCTTCACCAAAAATCAATTCCAGAAATCATTTCTTCCAATGTTAATGTCACTATGAATGAAGTCAAATCCTCTGCTGAAAATTGCTCTAACATACTTCACCATGTGTCCAAATTGGACCCTATTGAAAAAAGGGCATTAGATGATTGTATTGAACTTTTAGGTGATGCTACTATTGATGAGTTACAAACAACTCTTTATGATCTTTCTACTAAAAATAGTAGTAATTCACCTTTAAAGCACTATAATGATCTACAAACACTTCTTAGTGGTGCAATGACAAATCAAGATACTTGTCTTAATGGAATTTACAATAGTAAACACAATTTGAGTCAATACATTGAGAAGAACTTGCATAC--CATCTCAACATGTGAGCAACTCTCTTGTCATGCTCAAGAAGTTAAAGACAGGGTCGGCTCAAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTCATCAAACTCTAATGAAGTTTTCCCAGAATACGGGACCATGAAGAATGGGTACCCGAAATGGTTGAAAAAAAAAGGACAGGACACTTTTACAAGCTCCAGTGAACCAAATTAAGTTCGATTTGGTTGTGGCTAAGGATGGTAGTGGTAATTTTACTACTATTAATGCAGCATTAAGTGCCGCACCAAATTCTAGTAGTACAAGATTTGTGATTTACATTAAGGCGGGGAACGTATTTCGAATATATTGATGTCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272281" ref_strand="+" ref_description="SGN-E272281 [cLEM-19-H15]">
      <seq>acaaatcaatatacttgtcttgaaggaattcacaaaagtagacacaaattgagtcaatacattgagaagaacttgcatacaatatctcatcatatgagcaactctcttgccatgcttaagaagttaaagacagggtcgtctcaagggtcgtcatcaaactctaatgaagtcttccccgagtacggcaccatgaagaatgggtacccaaaatggttgcaaaaaaaggaccggacccttttacaagctccgttgaaccaaattaagttcaatttggttgtggctaaagatggtagtggtaattttactactattaatgcagcgttaagtgctgcaccaaattcttctagtacaagatttgtgatttacatcaaggcgggaacgtatttcgaatatattgacgtagaaagaaagaaaagtatgataatgttcatcggagatgggatcggaaaaacagtaataaagggtaatcggaacgtcgtaaatggatggactactttccgatcagctaccgttgctgtggtgggaaatggattcttagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50087" stop="54486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50387" g_stop="50532" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50533" i_stop="51411" i_length="879">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51412" g_stop="51779" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="514" r_length="368" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51780" i_stop="54160" i_length="2381">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54161" g_stop="54186" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="540" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E272281" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50387" e_stop="50532"/>
          <exon e_start="51412" e_stop="51779"/>
          <exon e_start="54161" e_stop="54186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATCAAGATACTTGTCTTGAAGGAATTCACAAAAGTAAACACAAATTGAGTCAATACATTGAGAAGAACTTGCATACAATATCTCATCATGTGAGCAACTCTCTTGCCATGCTTAAGAAGTTAAAGACAGGGTCGTCTCAAGGGTAAGGCCACTAAAACCTCTATTTTCGGCCCTCAAAATATTGAATTGATTCAAAAAAAATAGTATATTCCTTCTGTTTCATTTTATTTGACATATTTATTATAACATATTTTTGAAGCCATAACACATTTTTTACTCTAGAAAACACTTTTTAACTTTAAATTTTTCGTCTTTTTCTATATTATCACACAAGAGATGCTTTAGACAAGTATCTAAATTAAACTCGATCTTTTTTTAATTCTTAAACTTTATTTTTTGACATCATACAAAATGAAACTAGTGGAGTTTTCTCATATACAACAAGTATAATTTAACTTGACAACCATAAGATTTAAATGTTTTTTTGTTTTTTTTTAAAATTATGTATCTTGTCAAACTAATACACATGAATTAAAACAAATATGGTATAAGTTTTTTCTTTTTCTTTTAAGGAAAAATGTATAAGTATCTCCTCAACTTGTGCCCGAAATCTCAGAGACACACTTATATTATAGTAAGGTTTTATTACCCCCTAAACTTATTTTATAAGTAATTTTCTACCCCTTTTTGGCGCACTAGCTTGAAAAAAAATTAATGGTATAAAATTATTAATAAAATAAGTTCAGGGGTAATAGGCTTTAGTATAGTATAAGTGTGTCTTTAAAATTTCGGGCATAGATTGAGGGGGTACTTGTGCATTATCCCCTTTTTTTTAAAAGAATTTGTTGAAGTTTAATTTCGTAGCGATGAGTGAGTAAATTACTTTAAATTTCTCTACATAATTAAATAGTTTATCTTTCTCCTTTATGTACAATCATTTTAAATAAGTTACTTTTTTTTTGTCTTCATTTATTTAATCATGAATAAATTTAAAAGGCCTCTTATTATAATATAATTTTAGGTCGTCATCAAACTCTAATGAAGTCTTCCCCGAGTACGGCACCATGAAGAATGGGTACCCAAAATGGTTGCAAAAAAAGGACCGGACCCTTTTACAAGCTCCGTTGAACCAAATTAAGTTCAATTTGGTTGTGGCTAAAGATGGTAGTGGTAATTTTACTACTATTAATGCAGCGTTAAGTGCTGCACCAAATTCTTCTAGTACAAGATTTGTGATTTACATCAAGGCGGGAACGTATTTCGAATATATTGACGTAGAAAGAAAGAAAAGTATGATAATGTTCATCGGAGATGGGATCGGAAAAACAGTAATAAAGGGTAATCGGAACGTCGTAGATGGATGGACTACTTTCCGATCAGCTACCGTTGGTAAGTCCAGAACTCTCCTATTTTAATAAGAGTTTAACTTTTATACGTTGATATAGCTAGCATATGAAATTTAATTTTACGTTAACAATACTCATATTGGAGAAATATTAGTTGAGGTTAATAATTTTAAAATAAGATAGATAATTATTTGGACGAAGGCCACGTTTTATATAGTATCATGAGTTGTTGAAGTTAATTCAATGATTTAGACCTTAATTAATTTCATATTATTGGTGTGAAATAATTTTTTAATCATGGGTCATGTACATACATGACTATGATTAATAGGTTGATAGAATTATTCTAATATTCTTTTAGTAATCTAATTATGTTACATAGTATTTTCTCGATCATTTTTATTTATTCGCTATACTAAAAATAATTGTCTAATAATACTTATTTAATCTAAAAATCAAGAGATTATTAATTATTTTAAGGTGTGTGTCAGGTAAATAGCTAGTGGACAATAATTATTGAAATTTGAACATAGGAAGTAGTTTTTTGTAAAAGTAAAGATCATTGGTACCATCATGAAGGGATGAATGAATATATAAGATTTTGTTCATATATTTAATTAAAAATTTCAAATTCAAATTAAAAGACTGGAAAATAATCATAATTAAGACGCATTTCGCTTTTAATAAGTTAGTCATCCTTTTGGATATTATTGTGTAGATATTTGTGTTAGGCAAAAGTTCAAAAGTATGAATTATTAAAAAGAAGATAGTGAAAGATCTTGACATGAAATATTAGCATTGAACATGTAGGGTTATGAAAAAAATATGGATTCTGTCGGTGAGGAAAAACAAAACTAATATATACTCTGTTTACGATTGAGACAATTTTGAAAAATTTAAATTTTATCATGCATAATGGAGGAATCGAAATATTCATATACTATATATTTTTAAAAAATAAATAATTGATTAATCGTACAAAGTACCTTAAAATAGGAAGGGACGGAGCAGGAAAAATGTCGATATATTCATACAATTTGAATAATTTATAAAATTAAATATCAATATTATTGATCAATTAAAAAATTGTCGTGTACCACAATATTATTAACAAATTTATAAAAAAATTCAATAAATTTTATTTATATTTTACTAAATAAAAATTCATAAACTTTAAATATTAAATTTATCTCTGATTTATAACTAGGGAATTTGTAACTAGGGAATGATTGATATATTTATCTCATTAATTACATCTAATAGATAAAGGACCCCACAAAAACTACCTCAACATTAATTTGGTCCTATCTAATAAGTCTATCATATGAGCTATCATAAAAGTTATAAATTCAATAAATTTAATACGTTGATCTAAATTTTATATTTATATTTAATAAAAAAATATTTTAATTGAATTCACTTCAACAGTGCAACTAAATTTATTTTACAGTACGACTCCTATAATCAATGATCCCATGTCTTCTTGTCTGGTTAGTTCATCCCTCCAATAATTTTTGAATCCACGTCAAAAATTAATTAAATAGCTCGACTTGAAGCAATATGTAGCTTTAGCCTTTAATTTAATTAGGACCACCTAGAGTTATTATACGATAGATATGATAGCTTATATTCGATTAAATATTTTAAATTTTAAATATGAAATATTATGATAAAGTATAACTTTAAGTATAGCCAGGAGTAGAGTCAGATAAGATCAAGAAGTTATTAAAAAAAAAAATTTTGACAAAAAATGACATTGTCTGTAAATAAGTAATTTTTTTATAAATGTTGAACCCCGATGATTTTTGAATAATAATAATAATAATTGAATCCACAACTAAATATTTATGAATACTTACTAGTTAGTTTTCTAATTAAAACCTAGGGTCTACATAAGTTACTTTTTCCGTTCAGAATTATTTGTCATGTTACGCTTATCGAAAGTCAATTTGACTCATTTTCAAAGATAAATTGGATCACATTAATTCGATATTTTTTTTAAAAAATAGATATTCTAAAACTATATGAAAAGTACTATAAATTACAATTTTTTGCATATTAATATGATGAAAAAATATATCTTAAAATGTTAATCAAAGTTTTTATAATTTGACTCTAAAAATAGAAACCATGAAAATAATAATGGACGGAGGGAGTACTGTGTTTACATTACTAATATATATAACTAATGCATTAGATCTAAGTAATTTTTAAAAATAAATAGTGTTAGAGTCAAAATTATTAATTTTGATGATTCAGATCATAAATAATATATCCATGCATCCCTAATAAATTGTTTTCCACTAGCTTTAAGCAGAATCCAAAGAAATTTAAGTCTAGTTTTATATAAAAAGTCAAATTCAATTATCGAATATGATATTATTATTATAAAACTTATTATCTTTGAATTTTTTTAAATTGCAGCTGTGGTGGGAAATGGATTCTTAGCT</genome_strand>
        <mrna_strand>ACAAATCAATATACTTGTCTTGAAGGAATTCACAAAAGTAGACACAAATTGAGTCAATACATTGAGAAGAACTTGCATACAATATCTCATCATATGAGCAACTCTCTTGCCATGCTTAAGAAGTTAAAGACAGGGTCGTCTCAAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTCATCAAACTCTAATGAAGTCTTCCCCGAGTACGGCACCATGAAGAATGGGTACCCAAAATGGTTGCAAAAAAAGGACCGGACCCTTTTACAAGCTCCGTTGAACCAAATTAAGTTCAATTTGGTTGTGGCTAAAGATGGTAGTGGTAATTTTACTACTATTAATGCAGCGTTAAGTGCTGCACCAAATTCTTCTAGTACAAGATTTGTGATTTACATCAAGGCGGGAACGTATTTCGAATATATTGACGTAGAAAGAAAGAAAAGTATGATAATGTTCATCGGAGATGGGATCGGAAAAACAGTAATAAAGGGTAATCGGAACGTCGTAAATGGATGGACTACTTTCCGATCAGCTACCGTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTGGTGGGAAATGGATTCTTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326561" ref_strand="+" ref_description="SGN-E326561 [cTOC-17-P15]">
      <seq>aattcacaaaagtaaacacaaattgagtcaatacattgagaagaacttgcatacaatatctcatcatatgagcaactctcttgccatgcttaagaagttaaagacagggtcgtctcaagggtcgtcatcaaactctaatgaagtcttccccgagtacggcaccatgaagaatgggtacccaaaatggttgcaaaaaaaggaccggacccttttacaagctccgttgaaccaaattaagttcaatttggttgtggctaaagatggtagtggtaattttactactattaatgcagcgttaagtgctgcaccaaattcttctagtacaagatttgtgatttacatcaaggcgggaacgtatttcgaatatattgacgtagaaagaaagaaaagtatgataatgttcatcggagatgggatcggaaaaacagtaataaagggtaatcggaacgtcgtagatggatggactactttccgatcagctaccgttgctgtggtgggaaatggattcttagctagaggcattacgtttgagaactatgccggaccaagcaagcaccaagcggtggcgctgcggagcggctccgacctatcggcgttctaccaatgtagctttattgcctatcaagacaccctctacgtccactcacttcgacaattcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="50113" stop="54632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50413" g_stop="50532" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50533" i_stop="51411" i_length="879">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51412" g_stop="51779" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="488" r_length="368" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51780" i_stop="54160" i_length="2381">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54161" g_stop="54332" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="660" r_length="172" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E326561" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50413" e_stop="50532"/>
          <exon e_start="51412" e_stop="51779"/>
          <exon e_start="54161" e_stop="54332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCACAAAAGTAAACACAAATTGAGTCAATACATTGAGAAGAACTTGCATACAATATCTCATCATGTGAGCAACTCTCTTGCCATGCTTAAGAAGTTAAAGACAGGGTCGTCTCAAGGGTAAGGCCACTAAAACCTCTATTTTCGGCCCTCAAAATATTGAATTGATTCAAAAAAAATAGTATATTCCTTCTGTTTCATTTTATTTGACATATTTATTATAACATATTTTTGAAGCCATAACACATTTTTTACTCTAGAAAACACTTTTTAACTTTAAATTTTTCGTCTTTTTCTATATTATCACACAAGAGATGCTTTAGACAAGTATCTAAATTAAACTCGATCTTTTTTTAATTCTTAAACTTTATTTTTTGACATCATACAAAATGAAACTAGTGGAGTTTTCTCATATACAACAAGTATAATTTAACTTGACAACCATAAGATTTAAATGTTTTTTTGTTTTTTTTTAAAATTATGTATCTTGTCAAACTAATACACATGAATTAAAACAAATATGGTATAAGTTTTTTCTTTTTCTTTTAAGGAAAAATGTATAAGTATCTCCTCAACTTGTGCCCGAAATCTCAGAGACACACTTATATTATAGTAAGGTTTTATTACCCCCTAAACTTATTTTATAAGTAATTTTCTACCCCTTTTTGGCGCACTAGCTTGAAAAAAAATTAATGGTATAAAATTATTAATAAAATAAGTTCAGGGGTAATAGGCTTTAGTATAGTATAAGTGTGTCTTTAAAATTTCGGGCATAGATTGAGGGGGTACTTGTGCATTATCCCCTTTTTTTTAAAAGAATTTGTTGAAGTTTAATTTCGTAGCGATGAGTGAGTAAATTACTTTAAATTTCTCTACATAATTAAATAGTTTATCTTTCTCCTTTATGTACAATCATTTTAAATAAGTTACTTTTTTTTTGTCTTCATTTATTTAATCATGAATAAATTTAAAAGGCCTCTTATTATAATATAATTTTAGGTCGTCATCAAACTCTAATGAAGTCTTCCCCGAGTACGGCACCATGAAGAATGGGTACCCAAAATGGTTGCAAAAAAAGGACCGGACCCTTTTACAAGCTCCGTTGAACCAAATTAAGTTCAATTTGGTTGTGGCTAAAGATGGTAGTGGTAATTTTACTACTATTAATGCAGCGTTAAGTGCTGCACCAAATTCTTCTAGTACAAGATTTGTGATTTACATCAAGGCGGGAACGTATTTCGAATATATTGACGTAGAAAGAAAGAAAAGTATGATAATGTTCATCGGAGATGGGATCGGAAAAACAGTAATAAAGGGTAATCGGAACGTCGTAGATGGATGGACTACTTTCCGATCAGCTACCGTTGGTAAGTCCAGAACTCTCCTATTTTAATAAGAGTTTAACTTTTATACGTTGATATAGCTAGCATATGAAATTTAATTTTACGTTAACAATACTCATATTGGAGAAATATTAGTTGAGGTTAATAATTTTAAAATAAGATAGATAATTATTTGGACGAAGGCCACGTTTTATATAGTATCATGAGTTGTTGAAGTTAATTCAATGATTTAGACCTTAATTAATTTCATATTATTGGTGTGAAATAATTTTTTAATCATGGGTCATGTACATACATGACTATGATTAATAGGTTGATAGAATTATTCTAATATTCTTTTAGTAATCTAATTATGTTACATAGTATTTTCTCGATCATTTTTATTTATTCGCTATACTAAAAATAATTGTCTAATAATACTTATTTAATCTAAAAATCAAGAGATTATTAATTATTTTAAGGTGTGTGTCAGGTAAATAGCTAGTGGACAATAATTATTGAAATTTGAACATAGGAAGTAGTTTTTTGTAAAAGTAAAGATCATTGGTACCATCATGAAGGGATGAATGAATATATAAGATTTTGTTCATATATTTAATTAAAAATTTCAAATTCAAATTAAAAGACTGGAAAATAATCATAATTAAGACGCATTTCGCTTTTAATAAGTTAGTCATCCTTTTGGATATTATTGTGTAGATATTTGTGTTAGGCAAAAGTTCAAAAGTATGAATTATTAAAAAGAAGATAGTGAAAGATCTTGACATGAAATATTAGCATTGAACATGTAGGGTTATGAAAAAAATATGGATTCTGTCGGTGAGGAAAAACAAAACTAATATATACTCTGTTTACGATTGAGACAATTTTGAAAAATTTAAATTTTATCATGCATAATGGAGGAATCGAAATATTCATATACTATATATTTTTAAAAAATAAATAATTGATTAATCGTACAAAGTACCTTAAAATAGGAAGGGACGGAGCAGGAAAAATGTCGATATATTCATACAATTTGAATAATTTATAAAATTAAATATCAATATTATTGATCAATTAAAAAATTGTCGTGTACCACAATATTATTAACAAATTTATAAAAAAATTCAATAAATTTTATTTATATTTTACTAAATAAAAATTCATAAACTTTAAATATTAAATTTATCTCTGATTTATAACTAGGGAATTTGTAACTAGGGAATGATTGATATATTTATCTCATTAATTACATCTAATAGATAAAGGACCCCACAAAAACTACCTCAACATTAATTTGGTCCTATCTAATAAGTCTATCATATGAGCTATCATAAAAGTTATAAATTCAATAAATTTAATACGTTGATCTAAATTTTATATTTATATTTAATAAAAAAATATTTTAATTGAATTCACTTCAACAGTGCAACTAAATTTATTTTACAGTACGACTCCTATAATCAATGATCCCATGTCTTCTTGTCTGGTTAGTTCATCCCTCCAATAATTTTTGAATCCACGTCAAAAATTAATTAAATAGCTCGACTTGAAGCAATATGTAGCTTTAGCCTTTAATTTAATTAGGACCACCTAGAGTTATTATACGATAGATATGATAGCTTATATTCGATTAAATATTTTAAATTTTAAATATGAAATATTATGATAAAGTATAACTTTAAGTATAGCCAGGAGTAGAGTCAGATAAGATCAAGAAGTTATTAAAAAAAAAAATTTTGACAAAAAATGACATTGTCTGTAAATAAGTAATTTTTTTATAAATGTTGAACCCCGATGATTTTTGAATAATAATAATAATAATTGAATCCACAACTAAATATTTATGAATACTTACTAGTTAGTTTTCTAATTAAAACCTAGGGTCTACATAAGTTACTTTTTCCGTTCAGAATTATTTGTCATGTTACGCTTATCGAAAGTCAATTTGACTCATTTTCAAAGATAAATTGGATCACATTAATTCGATATTTTTTTTAAAAAATAGATATTCTAAAACTATATGAAAAGTACTATAAATTACAATTTTTTGCATATTAATATGATGAAAAAATATATCTTAAAATGTTAATCAAAGTTTTTATAATTTGACTCTAAAAATAGAAACCATGAAAATAATAATGGACGGAGGGAGTACTGTGTTTACATTACTAATATATATAACTAATGCATTAGATCTAAGTAATTTTTAAAAATAAATAGTGTTAGAGTCAAAATTATTAATTTTGATGATTCAGATCATAAATAATATATCCATGCATCCCTAATAAATTGTTTTCCACTAGCTTTAAGCAGAATCCAAAGAAATTTAAGTCTAGTTTTATATAAAAAGTCAAATTCAATTATCGAATATGATATTATTATTATAAAACTTATTATCTTTGAATTTTTTTAAATTGCAGCTGTGGTGGGAAATGGATTCTTAGCTAGAGGCATTACGTTTGAGAACTATGCCGGACCAAGCAAGCACCAAGCGGTGGCGCTGCGGAGCGGCTCCGACCTATCGGCGTTCTACCAATGTAGCTTTATTGCCTATCAAGACACCCTCTACGTCCACTCACTTCGACAATTCTA</genome_strand>
        <mrna_strand>AATTCACAAAAGTAAACACAAATTGAGTCAATACATTGAGAAGAACTTGCATACAATATCTCATCATATGAGCAACTCTCTTGCCATGCTTAAGAAGTTAAAGACAGGGTCGTCTCAAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTCATCAAACTCTAATGAAGTCTTCCCCGAGTACGGCACCATGAAGAATGGGTACCCAAAATGGTTGCAAAAAAAGGACCGGACCCTTTTACAAGCTCCGTTGAACCAAATTAAGTTCAATTTGGTTGTGGCTAAAGATGGTAGTGGTAATTTTACTACTATTAATGCAGCGTTAAGTGCTGCACCAAATTCTTCTAGTACAAGATTTGTGATTTACATCAAGGCGGGAACGTATTTCGAATATATTGACGTAGAAAGAAAGAAAAGTATGATAATGTTCATCGGAGATGGGATCGGAAAAACAGTAATAAAGGGTAATCGGAACGTCGTAGATGGATGGACTACTTTCCGATCAGCTACCGTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTGGTGGGAAATGGATTCTTAGCTAGAGGCATTACGTTTGAGAACTATGCCGGACCAAGCAAGCACCAAGCGGTGGCGCTGCGGAGCGGCTCCGACCTATCGGCGTTCTACCAATGTAGCTTTATTGCCTATCAAGACACCCTCTACGTCCACTCACTTCGACAATTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367641" ref_strand="+" ref_description="SGN-E367641 [cLPT-14-G22]">
      <seq>ttaagttcaatttggttgtggctaaagatggtgggggtaattttactactattaatgcagcgttaactgctgcaccaaattctactagtacaagatttgtgatttacatcaaggcgggaacgtctttcgaatatattgacgtagaaagaaagaaaagtatgataatgttcatcggagatgggatcggaaaaacagtaataaagggtaatcggaacgtcgtatatgggtggactactttccgatcagctaccgttgctgtggtgggaaagggattcttagctagaggcattacgtttgagaattatgccggaccaagcaagcaccaagcggaggcgctgcggagcggatccgacctatcggcgttttaccaatgtagctttattgcctatgaagacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51225" stop="54602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51525" g_stop="51779" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51780" i_stop="54160" i_length="2381">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54161" g_stop="54302" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="397" r_length="142" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E367641" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51525" e_stop="51779"/>
          <exon e_start="54161" e_stop="54302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGTTCAATTTGGTTGTGGCTAAAGATGGTAGTGGTAATTTTACTACTATTAATGCAGCGTTAAGTGCTGCACCAAATTCTTCTAGTACAAGATTTGTGATTTACATCAAGGCGGGAACGTATTTCGAATATATTGACGTAGAAAGAAAGAAAAGTATGATAATGTTCATCGGAGATGGGATCGGAAAAACAGTAATAAAGGGTAATCGGAACGTCGTAGATGGATGGACTACTTTCCGATCAGCTACCGTTGGTAAGTCCAGAACTCTCCTATTTTAATAAGAGTTTAACTTTTATACGTTGATATAGCTAGCATATGAAATTTAATTTTACGTTAACAATACTCATATTGGAGAAATATTAGTTGAGGTTAATAATTTTAAAATAAGATAGATAATTATTTGGACGAAGGCCACGTTTTATATAGTATCATGAGTTGTTGAAGTTAATTCAATGATTTAGACCTTAATTAATTTCATATTATTGGTGTGAAATAATTTTTTAATCATGGGTCATGTACATACATGACTATGATTAATAGGTTGATAGAATTATTCTAATATTCTTTTAGTAATCTAATTATGTTACATAGTATTTTCTCGATCATTTTTATTTATTCGCTATACTAAAAATAATTGTCTAATAATACTTATTTAATCTAAAAATCAAGAGATTATTAATTATTTTAAGGTGTGTGTCAGGTAAATAGCTAGTGGACAATAATTATTGAAATTTGAACATAGGAAGTAGTTTTTTGTAAAAGTAAAGATCATTGGTACCATCATGAAGGGATGAATGAATATATAAGATTTTGTTCATATATTTAATTAAAAATTTCAAATTCAAATTAAAAGACTGGAAAATAATCATAATTAAGACGCATTTCGCTTTTAATAAGTTAGTCATCCTTTTGGATATTATTGTGTAGATATTTGTGTTAGGCAAAAGTTCAAAAGTATGAATTATTAAAAAGAAGATAGTGAAAGATCTTGACATGAAATATTAGCATTGAACATGTAGGGTTATGAAAAAAATATGGATTCTGTCGGTGAGGAAAAACAAAACTAATATATACTCTGTTTACGATTGAGACAATTTTGAAAAATTTAAATTTTATCATGCATAATGGAGGAATCGAAATATTCATATACTATATATTTTTAAAAAATAAATAATTGATTAATCGTACAAAGTACCTTAAAATAGGAAGGGACGGAGCAGGAAAAATGTCGATATATTCATACAATTTGAATAATTTATAAAATTAAATATCAATATTATTGATCAATTAAAAAATTGTCGTGTACCACAATATTATTAACAAATTTATAAAAAAATTCAATAAATTTTATTTATATTTTACTAAATAAAAATTCATAAACTTTAAATATTAAATTTATCTCTGATTTATAACTAGGGAATTTGTAACTAGGGAATGATTGATATATTTATCTCATTAATTACATCTAATAGATAAAGGACCCCACAAAAACTACCTCAACATTAATTTGGTCCTATCTAATAAGTCTATCATATGAGCTATCATAAAAGTTATAAATTCAATAAATTTAATACGTTGATCTAAATTTTATATTTATATTTAATAAAAAAATATTTTAATTGAATTCACTTCAACAGTGCAACTAAATTTATTTTACAGTACGACTCCTATAATCAATGATCCCATGTCTTCTTGTCTGGTTAGTTCATCCCTCCAATAATTTTTGAATCCACGTCAAAAATTAATTAAATAGCTCGACTTGAAGCAATATGTAGCTTTAGCCTTTAATTTAATTAGGACCACCTAGAGTTATTATACGATAGATATGATAGCTTATATTCGATTAAATATTTTAAATTTTAAATATGAAATATTATGATAAAGTATAACTTTAAGTATAGCCAGGAGTAGAGTCAGATAAGATCAAGAAGTTATTAAAAAAAAAAATTTTGACAAAAAATGACATTGTCTGTAAATAAGTAATTTTTTTATAAATGTTGAACCCCGATGATTTTTGAATAATAATAATAATAATTGAATCCACAACTAAATATTTATGAATACTTACTAGTTAGTTTTCTAATTAAAACCTAGGGTCTACATAAGTTACTTTTTCCGTTCAGAATTATTTGTCATGTTACGCTTATCGAAAGTCAATTTGACTCATTTTCAAAGATAAATTGGATCACATTAATTCGATATTTTTTTTAAAAAATAGATATTCTAAAACTATATGAAAAGTACTATAAATTACAATTTTTTGCATATTAATATGATGAAAAAATATATCTTAAAATGTTAATCAAAGTTTTTATAATTTGACTCTAAAAATAGAAACCATGAAAATAATAATGGACGGAGGGAGTACTGTGTTTACATTACTAATATATATAACTAATGCATTAGATCTAAGTAATTTTTAAAAATAAATAGTGTTAGAGTCAAAATTATTAATTTTGATGATTCAGATCATAAATAATATATCCATGCATCCCTAATAAATTGTTTTCCACTAGCTTTAAGCAGAATCCAAAGAAATTTAAGTCTAGTTTTATATAAAAAGTCAAATTCAATTATCGAATATGATATTATTATTATAAAACTTATTATCTTTGAATTTTTTTAAATTGCAGCTGTGGTGGGAAATGGATTCTTAGCTAGAGGCATTACGTTTGAGAACTATGCCGGACCAAGCAAGCACCAAGCGGTGGCGCTGCGGAGCGGCTCCGACCTATCGGCGTTCTACCAATGTAGCTTTATTGCCTATCAAGACAC</genome_strand>
        <mrna_strand>TTAAGTTCAATTTGGTTGTGGCTAAAGATGGTGGGGGTAATTTTACTACTATTAATGCAGCGTTAACTGCTGCACCAAATTCTACTAGTACAAGATTTGTGATTTACATCAAGGCGGGAACGTCTTTCGAATATATTGACGTAGAAAGAAAGAAAAGTATGATAATGTTCATCGGAGATGGGATCGGAAAAACAGTAATAAAGGGTAATCGGAACGTCGTATATGGGTGGACTACTTTCCGATCAGCTACCGTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTGGTGGGAAAGGGATTCTTAGCTAGAGGCATTACGTTTGAGAATTATGCCGGACCAAGCAAGCACCAAGCGGAGGCGCTGCGGAGCGGATCCGACCTATCGGCGTTTTACCAATGTAGCTTTATTGCCTATGAAGACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269368" ref_strand="+" ref_description="SGN-E269368 [cLEM-18-F11]">
      <seq>ctactatttatgcagcgttaagtgctgcaccaaattgtggtagtacaagatttgtgatttacatcaaggcgggaacgtatttcgaatatattgacgtagaaagaaagaaaagtatgataatgttcatcggagatgggatcggaaaaacagtaataaagggtaatcggaacgtcgtagatggatggactactttccgatcagctaccgttgctgtggtgggaaatggattcttagctagaggcattacgtttgagaactatgccggaccaagcaagcaccaagcgggggcgctgcggagcggctccgacctatcggcgttctaccaatgtagctttattgcctatcaagacaccctctacgtgcactcacttcgacaattctatcgcgattgcgatgtctatgggacggttgacttcatttttggtaatgcagctgttgttctccagaattgtaacttgtatgctcgtaaacctaacccgaatcagaagaacatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51270" stop="55230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51570" g_stop="51779" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51780" i_stop="54160" i_length="2381">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54161" g_stop="54373" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="423" r_length="213" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54374" i_stop="54858" i_length="485">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54859" g_stop="54930" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="495" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E269368" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51570" e_stop="51779"/>
          <exon e_start="54161" e_stop="54373"/>
          <exon e_start="54859" e_stop="54930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTATTAATGCAGCGTTAAGTGCTGCACCAAATTCTTCTAGTACAAGATTTGTGATTTACATCAAGGCGGGAACGTATTTCGAATATATTGACGTAGAAAGAAAGAAAAGTATGATAATGTTCATCGGAGATGGGATCGGAAAAACAGTAATAAAGGGTAATCGGAACGTCGTAGATGGATGGACTACTTTCCGATCAGCTACCGTTGGTAAGTCCAGAACTCTCCTATTTTAATAAGAGTTTAACTTTTATACGTTGATATAGCTAGCATATGAAATTTAATTTTACGTTAACAATACTCATATTGGAGAAATATTAGTTGAGGTTAATAATTTTAAAATAAGATAGATAATTATTTGGACGAAGGCCACGTTTTATATAGTATCATGAGTTGTTGAAGTTAATTCAATGATTTAGACCTTAATTAATTTCATATTATTGGTGTGAAATAATTTTTTAATCATGGGTCATGTACATACATGACTATGATTAATAGGTTGATAGAATTATTCTAATATTCTTTTAGTAATCTAATTATGTTACATAGTATTTTCTCGATCATTTTTATTTATTCGCTATACTAAAAATAATTGTCTAATAATACTTATTTAATCTAAAAATCAAGAGATTATTAATTATTTTAAGGTGTGTGTCAGGTAAATAGCTAGTGGACAATAATTATTGAAATTTGAACATAGGAAGTAGTTTTTTGTAAAAGTAAAGATCATTGGTACCATCATGAAGGGATGAATGAATATATAAGATTTTGTTCATATATTTAATTAAAAATTTCAAATTCAAATTAAAAGACTGGAAAATAATCATAATTAAGACGCATTTCGCTTTTAATAAGTTAGTCATCCTTTTGGATATTATTGTGTAGATATTTGTGTTAGGCAAAAGTTCAAAAGTATGAATTATTAAAAAGAAGATAGTGAAAGATCTTGACATGAAATATTAGCATTGAACATGTAGGGTTATGAAAAAAATATGGATTCTGTCGGTGAGGAAAAACAAAACTAATATATACTCTGTTTACGATTGAGACAATTTTGAAAAATTTAAATTTTATCATGCATAATGGAGGAATCGAAATATTCATATACTATATATTTTTAAAAAATAAATAATTGATTAATCGTACAAAGTACCTTAAAATAGGAAGGGACGGAGCAGGAAAAATGTCGATATATTCATACAATTTGAATAATTTATAAAATTAAATATCAATATTATTGATCAATTAAAAAATTGTCGTGTACCACAATATTATTAACAAATTTATAAAAAAATTCAATAAATTTTATTTATATTTTACTAAATAAAAATTCATAAACTTTAAATATTAAATTTATCTCTGATTTATAACTAGGGAATTTGTAACTAGGGAATGATTGATATATTTATCTCATTAATTACATCTAATAGATAAAGGACCCCACAAAAACTACCTCAACATTAATTTGGTCCTATCTAATAAGTCTATCATATGAGCTATCATAAAAGTTATAAATTCAATAAATTTAATACGTTGATCTAAATTTTATATTTATATTTAATAAAAAAATATTTTAATTGAATTCACTTCAACAGTGCAACTAAATTTATTTTACAGTACGACTCCTATAATCAATGATCCCATGTCTTCTTGTCTGGTTAGTTCATCCCTCCAATAATTTTTGAATCCACGTCAAAAATTAATTAAATAGCTCGACTTGAAGCAATATGTAGCTTTAGCCTTTAATTTAATTAGGACCACCTAGAGTTATTATACGATAGATATGATAGCTTATATTCGATTAAATATTTTAAATTTTAAATATGAAATATTATGATAAAGTATAACTTTAAGTATAGCCAGGAGTAGAGTCAGATAAGATCAAGAAGTTATTAAAAAAAAAAATTTTGACAAAAAATGACATTGTCTGTAAATAAGTAATTTTTTTATAAATGTTGAACCCCGATGATTTTTGAATAATAATAATAATAATTGAATCCACAACTAAATATTTATGAATACTTACTAGTTAGTTTTCTAATTAAAACCTAGGGTCTACATAAGTTACTTTTTCCGTTCAGAATTATTTGTCATGTTACGCTTATCGAAAGTCAATTTGACTCATTTTCAAAGATAAATTGGATCACATTAATTCGATATTTTTTTTAAAAAATAGATATTCTAAAACTATATGAAAAGTACTATAAATTACAATTTTTTGCATATTAATATGATGAAAAAATATATCTTAAAATGTTAATCAAAGTTTTTATAATTTGACTCTAAAAATAGAAACCATGAAAATAATAATGGACGGAGGGAGTACTGTGTTTACATTACTAATATATATAACTAATGCATTAGATCTAAGTAATTTTTAAAAATAAATAGTGTTAGAGTCAAAATTATTAATTTTGATGATTCAGATCATAAATAATATATCCATGCATCCCTAATAAATTGTTTTCCACTAGCTTTAAGCAGAATCCAAAGAAATTTAAGTCTAGTTTTATATAAAAAGTCAAATTCAATTATCGAATATGATATTATTATTATAAAACTTATTATCTTTGAATTTTTTTAAATTGCAGCTGTGGTGGGAAATGGATTCTTAGCTAGAGGCATTACGTTTGAGAACTATGCCGGACCAAGCAAGCACCAAGCGGTGGCGCTGCGGAGCGGCTCCGACCTATCGGCGTTCTACCAATGTAGCTTTATTGCCTATCAAGACACCCTCTACGTCCACTCACTTCGACAATTCTATCGCGATTGCGATGTCTATGGGACGGTTGACTTCATTTTTGGTAACATTATAGTTATCTCGTTTAAATATTTTAGTTGTTATACAATATTTAATAAATTTACTAAAAATATTTATAAGTCAAAATTTTCAGTTTAACCTGCTCTCTTTCTTGGCCATTAAGTTAATACCTCAGATGGTCATATATTTAAATATGTTATCTTGTCATTAAGTTAATACCTCAGATGGTCATATATCCAAATATGTTATCTTATATAAACTTTTCTCTCATACATTCTTTTATATATAATTGATTACTTATTTTTGCTAATAGAGATACGTAGATTCACTACAAAAATATTGTGAATTACATAGGAATTAGTACAAAAATTTATATTAATTCTCAAATAAAATTTCCATTTAATTCACAGTTTTCCTGTAGTGATCGAGTCATCAAACAAGGTTAACTTCTCTTTCAATATATTAGTATGTTATTAGCTTCTATACGAGACATCTGATTACTTCGATCCTAACAGTTTCTTCAAACAGGTAATGCAGCTGTTGTTCTCCAGAATTGTAACTTGTATGCTCGTAAACCTAACCCGAATCAGAAGAACATGT</genome_strand>
        <mrna_strand>CTACTATTTATGCAGCGTTAAGTGCTGCACCAAATTGTGGTAGTACAAGATTTGTGATTTACATCAAGGCGGGAACGTATTTCGAATATATTGACGTAGAAAGAAAGAAAAGTATGATAATGTTCATCGGAGATGGGATCGGAAAAACAGTAATAAAGGGTAATCGGAACGTCGTAGATGGATGGACTACTTTCCGATCAGCTACCGTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTGGTGGGAAATGGATTCTTAGCTAGAGGCATTACGTTTGAGAACTATGCCGGACCAAGCAAGCACCAAGCGGGGGCGCTGCGGAGCGGCTCCGACCTATCGGCGTTCTACCAATGTAGCTTTATTGCCTATCAAGACACCCTCTACGTGCACTCACTTCGACAATTCTATCGCGATTGCGATGTCTATGGGACGGTTGACTTCATTTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGCAGCTGTTGTTCTCCAGAATTGTAACTTGTATGCTCGTAAACCTAACCCGAATCAGAAGAACATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325938" ref_strand="+" ref_description="SGN-E325938 [cTOC-12-F11]">
      <seq>ttgctgtggtgggaaatggattcttagctagaggcattacgtttgagaactatgccggaccaagcaagcaccaagcggtggcgctgcggagcggctccgacctatcggcgttctaccaatgtagctttattgcctatcaagacaccctctacgtccactcacttcgacaattctatcgcgattgcgatgtctatgggacggttgacttcatttttggtaatgcagctgttgttctccagaattgtaacttgtatgctcgtaaacctaacccgaatcagaagaacatgttcacggcacaaggaagagaagatccaaatcaaaacactggaatttcaatcttgaattgtaaagtggaagctgcatcggatttagttcctgttgtatcgtcattcaaaaattacttaggacgaccatggaaacaatattcaagaactgtaattctcatatccaatattggaagcttaattgatcctgctggttggttagaatggagtggtgattttgcattgaacacactttattatggagagtatttgaaccggggacccggttcaaatactagtgctagagtaaaatggcccggttatcgggtcattaatagctctag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53860" stop="55549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54161" g_stop="54373" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="216" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54374" i_stop="54858" i_length="485">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54859" g_stop="55249" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="607" r_length="391" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E325938" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54161" e_stop="54373"/>
          <exon e_start="54859" e_stop="55249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGGTGGGAAATGGATTCTTAGCTAGAGGCATTACGTTTGAGAACTATGCCGGACCAAGCAAGCACCAAGCGGTGGCGCTGCGGAGCGGCTCCGACCTATCGGCGTTCTACCAATGTAGCTTTATTGCCTATCAAGACACCCTCTACGTCCACTCACTTCGACAATTCTATCGCGATTGCGATGTCTATGGGACGGTTGACTTCATTTTTGGTAACATTATAGTTATCTCGTTTAAATATTTTAGTTGTTATACAATATTTAATAAATTTACTAAAAATATTTATAAGTCAAAATTTTCAGTTTAACCTGCTCTCTTTCTTGGCCATTAAGTTAATACCTCAGATGGTCATATATTTAAATATGTTATCTTGTCATTAAGTTAATACCTCAGATGGTCATATATCCAAATATGTTATCTTATATAAACTTTTCTCTCATACATTCTTTTATATATAATTGATTACTTATTTTTGCTAATAGAGATACGTAGATTCACTACAAAAATATTGTGAATTACATAGGAATTAGTACAAAAATTTATATTAATTCTCAAATAAAATTTCCATTTAATTCACAGTTTTCCTGTAGTGATCGAGTCATCAAACAAGGTTAACTTCTCTTTCAATATATTAGTATGTTATTAGCTTCTATACGAGACATCTGATTACTTCGATCCTAACAGTTTCTTCAAACAGGTAATGCAGCTGTTGTTCTCCAGAATTGTAACTTGTATGCTCGTAAACCTAACCCGAATCAGAAGAACATGTTCACGGCACAAGGAAGAGAAGATCCAAATCAAAACACTGGAATTTCAATCTTGAATTGTAAAGTGGAAGCTGCATCGGATTTAGTTCCTGTTGTATCGTCATTCAAAAATTACTTAGGACGACCATGGAAACAATATTCAAGAACTGTAATTCTCATATCCAATATTGGAAGCTTAATTGATCCTGCTGGTTGGTTAGAATGGAGTGGTGATTTTGCATTGAACACACTTTATTATGGAGAGTATTTGAACCGGGGACCCGGTTCAAATACTAGTGCTAGAGTAAAATGGCCCGGTTATCGGGTCATTAATAGCTCTAG</genome_strand>
        <mrna_strand>CTGTGGTGGGAAATGGATTCTTAGCTAGAGGCATTACGTTTGAGAACTATGCCGGACCAAGCAAGCACCAAGCGGTGGCGCTGCGGAGCGGCTCCGACCTATCGGCGTTCTACCAATGTAGCTTTATTGCCTATCAAGACACCCTCTACGTCCACTCACTTCGACAATTCTATCGCGATTGCGATGTCTATGGGACGGTTGACTTCATTTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGCAGCTGTTGTTCTCCAGAATTGTAACTTGTATGCTCGTAAACCTAACCCGAATCAGAAGAACATGTTCACGGCACAAGGAAGAGAAGATCCAAATCAAAACACTGGAATTTCAATCTTGAATTGTAAAGTGGAAGCTGCATCGGATTTAGTTCCTGTTGTATCGTCATTCAAAAATTACTTAGGACGACCATGGAAACAATATTCAAGAACTGTAATTCTCATATCCAATATTGGAAGCTTAATTGATCCTGCTGGTTGGTTAGAATGGAGTGGTGATTTTGCATTGAACACACTTTATTATGGAGAGTATTTGAACCGGGGACCCGGTTCAAATACTAGTGCTAGAGTAAAATGGCCCGGTTATCGGGTCATTAATAGCTCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324892" ref_strand="+" ref_description="SGN-E324892 [cTOC-11-F8]">
      <seq>ttgctgtggtgggaaatggattcttagctagaggcattacgtttgagaactatgccggaccaagcaagcaccaagcggtggcgctgcggagcggctccgacctatcggcgttctaccaatgtagctttattgcctatcaagacaccctctacgtccactcacttcgacaattctatcgcgattgcgatgtctatgggacggttgacttcatttttggtaatgcagctgttgttctccagaattgtaacttgtatgctcgtaaacctaacccgaatcagaagaacatgttcacggcacaaggaagagaagatccaaatcaaaacactggaatttcaatcttgaattgtaaagtggaagctgcatcggatttagttcctgttgtatcgtcattcaaaaattacttaggacgaccatggaaacaatattcaagaactgtaattctcatatccaatattggaagcttaattgatcctgctggttggttagaatggagtggtgattttgcattgaacacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53860" stop="55458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54161" g_stop="54373" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="216" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54374" i_stop="54858" i_length="485">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54859" g_stop="55158" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="516" r_length="300" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E324892" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54161" e_stop="54373"/>
          <exon e_start="54859" e_stop="55158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGGTGGGAAATGGATTCTTAGCTAGAGGCATTACGTTTGAGAACTATGCCGGACCAAGCAAGCACCAAGCGGTGGCGCTGCGGAGCGGCTCCGACCTATCGGCGTTCTACCAATGTAGCTTTATTGCCTATCAAGACACCCTCTACGTCCACTCACTTCGACAATTCTATCGCGATTGCGATGTCTATGGGACGGTTGACTTCATTTTTGGTAACATTATAGTTATCTCGTTTAAATATTTTAGTTGTTATACAATATTTAATAAATTTACTAAAAATATTTATAAGTCAAAATTTTCAGTTTAACCTGCTCTCTTTCTTGGCCATTAAGTTAATACCTCAGATGGTCATATATTTAAATATGTTATCTTGTCATTAAGTTAATACCTCAGATGGTCATATATCCAAATATGTTATCTTATATAAACTTTTCTCTCATACATTCTTTTATATATAATTGATTACTTATTTTTGCTAATAGAGATACGTAGATTCACTACAAAAATATTGTGAATTACATAGGAATTAGTACAAAAATTTATATTAATTCTCAAATAAAATTTCCATTTAATTCACAGTTTTCCTGTAGTGATCGAGTCATCAAACAAGGTTAACTTCTCTTTCAATATATTAGTATGTTATTAGCTTCTATACGAGACATCTGATTACTTCGATCCTAACAGTTTCTTCAAACAGGTAATGCAGCTGTTGTTCTCCAGAATTGTAACTTGTATGCTCGTAAACCTAACCCGAATCAGAAGAACATGTTCACGGCACAAGGAAGAGAAGATCCAAATCAAAACACTGGAATTTCAATCTTGAATTGTAAAGTGGAAGCTGCATCGGATTTAGTTCCTGTTGTATCGTCATTCAAAAATTACTTAGGACGACCATGGAAACAATATTCAAGAACTGTAATTCTCATATCCAATATTGGAAGCTTAATTGATCCTGCTGGTTGGTTAGAATGGAGTGGTGATTTTGCATTGAACACAC</genome_strand>
        <mrna_strand>CTGTGGTGGGAAATGGATTCTTAGCTAGAGGCATTACGTTTGAGAACTATGCCGGACCAAGCAAGCACCAAGCGGTGGCGCTGCGGAGCGGCTCCGACCTATCGGCGTTCTACCAATGTAGCTTTATTGCCTATCAAGACACCCTCTACGTCCACTCACTTCGACAATTCTATCGCGATTGCGATGTCTATGGGACGGTTGACTTCATTTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGCAGCTGTTGTTCTCCAGAATTGTAACTTGTATGCTCGTAAACCTAACCCGAATCAGAAGAACATGTTCACGGCACAAGGAAGAGAAGATCCAAATCAAAACACTGGAATTTCAATCTTGAATTGTAAAGTGGAAGCTGCATCGGATTTAGTTCCTGTTGTATCGTCATTCAAAAATTACTTAGGACGACCATGGAAACAATATTCAAGAACTGTAATTCTCATATCCAATATTGGAAGCTTAATTGATCCTGCTGGTTGGTTAGAATGGAGTGGTGATTTTGCATTGAACACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327339" ref_strand="+" ref_description="SGN-E327339 [cTOC-19-J22]">
      <seq>ttagctagaggcattacgtttgagaactatgccggaccaagcaagcaccaagcggtggcgctgcggagcggctccgacctatcggcgttctaccaatgtagctttattgcctatcaagacaccctctacgtccactcacttcgacaattctatcgcgattgcgatgtctatgggacggttgacttcatttttggtaatgcagctgttgttctccagaattgtaacttgtatgctcgtaaacctaacccgaatcagaagaacatgttcacggcacaaggaagagaagatccaaatcaaaacactggaatttcaatcttgaattgtaaagtggaagctgcatcggatttagttcctgttgtatcgtcattcaaaaattacttaggacgaccatggaaacaatattcaagaactgtaattctcatatccaatattggaagcttaattgatcctgctggttggttagaatggagtggtgattttgcattgaacacactttattatggaggagtatttgaaccggggacccggttcaaatactagtgctagagtaaaatggcccggttatcgggtcattaatagctctagtgaggccagtcaattcactgttggaaatttattcaagggagtgagtggatacctgctaccggggtgccattttattctggtttgacttcctcntgaatacattattttaatcagcgaccgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53881" stop="55673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54181" g_stop="54373" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54374" i_stop="54858" i_length="485">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54859" g_stop="55373" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="707" r_length="514" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E327339" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54181" e_stop="54373"/>
          <exon e_start="54859" e_stop="55373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGCTAGAGGCATTACGTTTGAGAACTATGCCGGACCAAGCAAGCACCAAGCGGTGGCGCTGCGGAGCGGCTCCGACCTATCGGCGTTCTACCAATGTAGCTTTATTGCCTATCAAGACACCCTCTACGTCCACTCACTTCGACAATTCTATCGCGATTGCGATGTCTATGGGACGGTTGACTTCATTTTTGGTAACATTATAGTTATCTCGTTTAAATATTTTAGTTGTTATACAATATTTAATAAATTTACTAAAAATATTTATAAGTCAAAATTTTCAGTTTAACCTGCTCTCTTTCTTGGCCATTAAGTTAATACCTCAGATGGTCATATATTTAAATATGTTATCTTGTCATTAAGTTAATACCTCAGATGGTCATATATCCAAATATGTTATCTTATATAAACTTTTCTCTCATACATTCTTTTATATATAATTGATTACTTATTTTTGCTAATAGAGATACGTAGATTCACTACAAAAATATTGTGAATTACATAGGAATTAGTACAAAAATTTATATTAATTCTCAAATAAAATTTCCATTTAATTCACAGTTTTCCTGTAGTGATCGAGTCATCAAACAAGGTTAACTTCTCTTTCAATATATTAGTATGTTATTAGCTTCTATACGAGACATCTGATTACTTCGATCCTAACAGTTTCTTCAAACAGGTAATGCAGCTGTTGTTCTCCAGAATTGTAACTTGTATGCTCGTAAACCTAACCCGAATCAGAAGAACATGTTCACGGCACAAGGAAGAGAAGATCCAAATCAAAACACTGGAATTTCAATCTTGAATTGTAAAGTGGAAGCTGCATCGGATTTAGTTCCTGTTGTATCGTCATTCAAAAATTACTTAGGACGACCATGGAAACAATATTCAAGAACTGTAATTCTCATATCCAATATTGGAAGCTTAATTGATCCTGCTGGTTGGTTAGAATGGAGTGGTGATTTTGCATTGAACACACTTTATTATGGA-GAGTATTTGAACCGGGGACCCGGTTCAAATACTAGTGCTAGAGTAAAATGGCCCGGTTATCGGGTCATTAATAGCTCTAGTGAGGCCAGTCAATTCACTGTTGGAAATTTTATTCAAGGGAGTGAGTGGATACCTGCTACCGGGGTGCCATTTTATTCTGGTTTGACTTCCTCTTGAATACATTATTTTAAATCAGCGACCGCT</genome_strand>
        <mrna_strand>TTAGCTAGAGGCATTACGTTTGAGAACTATGCCGGACCAAGCAAGCACCAAGCGGTGGCGCTGCGGAGCGGCTCCGACCTATCGGCGTTCTACCAATGTAGCTTTATTGCCTATCAAGACACCCTCTACGTCCACTCACTTCGACAATTCTATCGCGATTGCGATGTCTATGGGACGGTTGACTTCATTTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGCAGCTGTTGTTCTCCAGAATTGTAACTTGTATGCTCGTAAACCTAACCCGAATCAGAAGAACATGTTCACGGCACAAGGAAGAGAAGATCCAAATCAAAACACTGGAATTTCAATCTTGAATTGTAAAGTGGAAGCTGCATCGGATTTAGTTCCTGTTGTATCGTCATTCAAAAATTACTTAGGACGACCATGGAAACAATATTCAAGAACTGTAATTCTCATATCCAATATTGGAAGCTTAATTGATCCTGCTGGTTGGTTAGAATGGAGTGGTGATTTTGCATTGAACACACTTTATTATGGAGGAGTATTTGAACCGGGGACCCGGTTCAAATACTAGTGCTAGAGTAAAATGGCCCGGTTATCGGGTCATTAATAGCTCTAGTGAGGCCAGTCAATTCACTGTTGGAAA-TTTATTCAAGGGAGTGAGTGGATACCTGCTACCGGGGTGCCATTTTATTCTGGTTTGACTTCCTCNTGAATACATTATTTT-AATCAGCGACCGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277474" ref_strand="-" ref_description="SGN-E277474 [cLER-3-G10]">
      <seq>gttatcgggtcattaatagctctagtgaggccagtcaattcactgttggaaattttattcaagggagtgagtggatacctgctaccggggtgccattttattctggtttgacttcctcttgaatacattattttaaatcagcgaccgctgagggtttatcttatagggtatttattaatataatttttatcaaaaatatcaacaacttatggggtatttattaatatatataccttggagataacaaccacaatagttactagtctggttcattgcttgcatatgttcatgtgttaagatttttcttagcatatgttgttttagcttgttttcctattgagaatatatatatatatatatatatatatattataatatttctttttgtgagaaatttgatgtcagagcttcatttcttgaggaattgttaatgtcaatgaatgtagtgccaatataagtttgatctttatcatgaataaattttgaatgtatttatttatataaaaaaaaaaaaaaaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54925" stop="56033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55225" g_stop="55728" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="505" polyA_stop="521"/>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E277474" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277474" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="55225" e_stop="55728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATCGGGTCATTAATAGCTCTAGTGAGGCCAGTCAATTCACTGTTGGAAATTTTATTCAAGGGAGTGAGTGGATACCTGCTACCGGGGTGCCATTTTATTCTGGTTTGACTTCCTCTTGAATACATTATTTTAAATCAGCGACCGCTGAGGGTTTATCTTATAGGGTATTTATTAATATAATTTTTATCAAAAATATCAACAACTTATGGGGTATTTATTAATATATATACCTTGGAGATAACAACCACAATAGTTACTAGTCTGGTTCATTGCTTGCATATGTTCATGTGTTAAGATTTTTCTTAGCATATGTTGTTTTAGCTTGTTTTCCTATTGAGAATATATATATATATATATATATATATATTATAATATTTCTTTTTGTGAGAAATTTGATGTCAGAGCTTCATTTCTTGAGGAATTGTTAATGTCAATGAATGTAGTGCCAATATAAGTTTGATCTTTATCATGAATAAATTTTGAATGTATTTATTTATATAA</genome_strand>
        <mrna_strand>GTTATCGGGTCATTAATAGCTCTAGTGAGGCCAGTCAATTCACTGTTGGAAATTTTATTCAAGGGAGTGAGTGGATACCTGCTACCGGGGTGCCATTTTATTCTGGTTTGACTTCCTCTTGAATACATTATTTTAAATCAGCGACCGCTGAGGGTTTATCTTATAGGGTATTTATTAATATAATTTTTATCAAAAATATCAACAACTTATGGGGTATTTATTAATATATATACCTTGGAGATAACAACCACAATAGTTACTAGTCTGGTTCATTGCTTGCATATGTTCATGTGTTAAGATTTTTCTTAGCATATGTTGTTTTAGCTTGTTTTCCTATTGAGAATATATATATATATATATATATATATATTATAATATTTCTTTTTGTGAGAAATTTGATGTCAGAGCTTCATTTCTTGAGGAATTGTTAATGTCAATGAATGTAGTGCCAATATAAGTTTGATCTTTATCATGAATAAATTTTGAATGTATTTATTTATATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331837" ref_strand="+" ref_description="SGN-E331837 [cTOD-7-D1]">
      <seq>ccttctttaatttctcactttttttcttctttatttttatttttttcaatttcctatttaggccacaaccacaatggctattccaaaaggattagaaatcaataatattgtaggattattcttacttttgggtatagccattttatcatcaaaagttgcagaatgtgcaccttttggttcgcgtcgtggccttatggagacagttttcgatgttaccaagcacggagctagaccagatcccactgcagatagcactcggggatttatgatggcatggagagcagcatgtcaatcaacaggcccagcaaaagttgttattccaccaggaacatttactacaggagaaactatttttcaaggcccatgtacatgtccaaagcccattattattgaaattcaagggacagtattgtcaaatacagacataagtttgtactcacgtgcctcatggatatccctcgaacacgtggacggtgtcgttattacaggtggcggaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64874" stop="66080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65174" g_stop="65432" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65433" i_stop="65539" i_length="107">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65540" g_stop="65780" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="500" r_length="241" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E331837" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65174" e_stop="65432"/>
          <exon e_start="65540" e_stop="65780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCTTTAATTTCTCACTTTTTTTCTTCTTTATTTTTATTTTTTTCAATTTCCTATTTAGGCCACAACCACAATGGCTATTCCAAAAGGATTAGAAATCAATAATATTGTAGGATTATTCTTACTTTTGGGTATAGCCATTTTATCATCAAAAGTTGCAGAATGTGCACCTTTTGGTTCGCGTCGTGGCCTTATGGAGACAGTTTTCGATGTTACCAAGCACGGAGCTAGACCAGATCCCACTGCAGATAGCACTCGGGTAAAACCCAAACTTATATTTAAATTTCTAGCTCTGCGCACTCTGCCGTAAAGCCAAAAATAAATTGGAGGCCTAACTTTTTTCTTTTTTGTTGTTGGTTTTAATAGGGATTTATGATGGCATGGAGAGCAGCATGTCAATCAACAGGCCCAGCAAAAGTTGTTATTCCACCAGGAACATTTACTACAGGAGAAACTATTTTTCAAGGCCCATGTACATGTCCAAAGCCCATTATTATTGAAATTCAAGGGACAGTATTGTCAAATACAGACATAAGTTTGTACTCACGTGCCTCATGGATATCCCTCGAACACGTGGACGGTGTCGTTATTACAGGTGGCGGAACTC</genome_strand>
        <mrna_strand>CCTTCTTTAATTTCTCACTTTTTTTCTTCTTTATTTTTATTTTTTTCAATTTCCTATTTAGGCCACAACCACAATGGCTATTCCAAAAGGATTAGAAATCAATAATATTGTAGGATTATTCTTACTTTTGGGTATAGCCATTTTATCATCAAAAGTTGCAGAATGTGCACCTTTTGGTTCGCGTCGTGGCCTTATGGAGACAGTTTTCGATGTTACCAAGCACGGAGCTAGACCAGATCCCACTGCAGATAGCACTCGG...........................................................................................................GGATTTATGATGGCATGGAGAGCAGCATGTCAATCAACAGGCCCAGCAAAAGTTGTTATTCCACCAGGAACATTTACTACAGGAGAAACTATTTTTCAAGGCCCATGTACATGTCCAAAGCCCATTATTATTGAAATTCAAGGGACAGTATTGTCAAATACAGACATAAGTTTGTACTCACGTGCCTCATGGATATCCCTCGAACACGTGGACGGTGTCGTTATTACAGGTGGCGGAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E359596" ref_strand="+" ref_description="SGN-E359596 [cLPP-5-K6]">
      <seq>tttaatttctcacttttttttcttctttatttttattttttcaatttcctatttaggccacaaccacaatggctattccaaaaggattagaaatcaataatattgtaggattattcttacttttgggtatagccattttatcatcaaaagttgcagaatgtgcaccttttggttcgcgtcgtggccttatggagacagttttcgatgttaccaagcacggagctagaccagatcccactgcagatagcactcggggatttatgatggcatggagagcagcatgtcaatcaacaggcccagcaaaaattgttattccaccaggaacatttactacaggagaaactatttttcaaggcccatgtacatgtccaaagcccattattattgaaattcaagggacagtattgtcaaatacagacataagtttgtactcacgtgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64879" stop="66026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65179" g_stop="65432" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65433" i_stop="65539" i_length="107">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65540" g_stop="65726" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="441" r_length="187" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E359596" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65179" e_stop="65432"/>
          <exon e_start="65540" e_stop="65726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATTTCTCACTTTT-TTTCTTCTTTATTTTTATTTTTTTCAATTTCCTATTTAGGCCACAACCACAATGGCTATTCCAAAAGGATTAGAAATCAATAATATTGTAGGATTATTCTTACTTTTGGGTATAGCCATTTTATCATCAAAAGTTGCAGAATGTGCACCTTTTGGTTCGCGTCGTGGCCTTATGGAGACAGTTTTCGATGTTACCAAGCACGGAGCTAGACCAGATCCCACTGCAGATAGCACTCGGGTAAAACCCAAACTTATATTTAAATTTCTAGCTCTGCGCACTCTGCCGTAAAGCCAAAAATAAATTGGAGGCCTAACTTTTTTCTTTTTTGTTGTTGGTTTTAATAGGGATTTATGATGGCATGGAGAGCAGCATGTCAATCAACAGGCCCAGCAAAAGTTGTTATTCCACCAGGAACATTTACTACAGGAGAAACTATTTTTCAAGGCCCATGTACATGTCCAAAGCCCATTATTATTGAAATTCAAGGGACAGTATTGTCAAATACAGACATAAGTTTGTACTCACGTGCCT</genome_strand>
        <mrna_strand>TTTAATTTCTCACTTTTTTTTCTTCTTTATTTTTA-TTTTTTCAATTTCCTATTTAGGCCACAACCACAATGGCTATTCCAAAAGGATTAGAAATCAATAATATTGTAGGATTATTCTTACTTTTGGGTATAGCCATTTTATCATCAAAAGTTGCAGAATGTGCACCTTTTGGTTCGCGTCGTGGCCTTATGGAGACAGTTTTCGATGTTACCAAGCACGGAGCTAGACCAGATCCCACTGCAGATAGCACTCGG...........................................................................................................GGATTTATGATGGCATGGAGAGCAGCATGTCAATCAACAGGCCCAGCAAAAATTGTTATTCCACCAGGAACATTTACTACAGGAGAAACTATTTTTCAAGGCCCATGTACATGTCCAAAGCCCATTATTATTGAAATTCAAGGGACAGTATTGTCAAATACAGACATAAGTTTGTACTCACGTGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E364303" ref_strand="+" ref_description="SGN-E364303 [cLPP-20-M18]">
      <seq>tttaatttctcacttttttttcttctttatttttattttttcaatttcctatttaggccacaaccacaatggctattccaaaaggattagaaatcaataatattgtaggattattcttacttttgggtatagccattttatcatcaaaagttgcagaatgtgcaccttttggttcgcgtcgtggccttatggagacagttttcgatgttaccaagcacggagctagaccagatcccactgcagatagcactcggggatttatgatggcatggagagcagcatgtcaatcaacaggcccagcaaaaattgttattccaccaggaacatttactacaggagagaactttttttcaaggcccatgtacatgtccaaagcccattattattgaaattcaagggacagtattgtcaaatacagacataagtttgtactcacgtgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64879" stop="66025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65179" g_stop="65432" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65433" i_stop="65539" i_length="107">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65540" g_stop="65725" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="441" r_length="187" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E364303" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65179" e_stop="65432"/>
          <exon e_start="65540" e_stop="65725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATTTCTCACTTTT-TTTCTTCTTTATTTTTATTTTTTTCAATTTCCTATTTAGGCCACAACCACAATGGCTATTCCAAAAGGATTAGAAATCAATAATATTGTAGGATTATTCTTACTTTTGGGTATAGCCATTTTATCATCAAAAGTTGCAGAATGTGCACCTTTTGGTTCGCGTCGTGGCCTTATGGAGACAGTTTTCGATGTTACCAAGCACGGAGCTAGACCAGATCCCACTGCAGATAGCACTCGGGTAAAACCCAAACTTATATTTAAATTTCTAGCTCTGCGCACTCTGCCGTAAAGCCAAAAATAAATTGGAGGCCTAACTTTTTTCTTTTTTGTTGTTGGTTTTAATAGGGATTTATGATGGCATGGAGAGCAGCATGTCAATCAACAGGCCCAGCAAAAGTTGTTATTCCACCAGGAACATTTACTACAGGAGA-AACTATTTTTCAAGGCCCATGTACATGTCCAAAGCCCATTATTATTGAAATTCAAGGGACAGTATTGTCAAATACAGACATAAGTTTGTACTCACGTGCC</genome_strand>
        <mrna_strand>TTTAATTTCTCACTTTTTTTTCTTCTTTATTTTTA-TTTTTTCAATTTCCTATTTAGGCCACAACCACAATGGCTATTCCAAAAGGATTAGAAATCAATAATATTGTAGGATTATTCTTACTTTTGGGTATAGCCATTTTATCATCAAAAGTTGCAGAATGTGCACCTTTTGGTTCGCGTCGTGGCCTTATGGAGACAGTTTTCGATGTTACCAAGCACGGAGCTAGACCAGATCCCACTGCAGATAGCACTCGG...........................................................................................................GGATTTATGATGGCATGGAGAGCAGCATGTCAATCAACAGGCCCAGCAAAAATTGTTATTCCACCAGGAACATTTACTACAGGAGAGAACTTTTTTTCAAGGCCCATGTACATGTCCAAAGCCCATTATTATTGAAATTCAAGGGACAGTATTGTCAAATACAGACATAAGTTTGTACTCACGTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E364131" ref_strand="+" ref_description="SGN-E364131 [cLPP-16-C12]">
      <seq>tttaatttctcacttttttttcttctttatttttattgtttcaatttcctatttaggccacaaccacaatggctattccaaaaggattagaaatcaataatattgtaggattattcttacttttgggtatagccattttatcatcaaaagttgcagaatgtgcaccttttggttcgcgtcgtggccttatggagacagttttcgatgttaccaagcacggagctagaccagatcccactgcagatagcactcggggatttatgatggcatggagagcagcatgtcaatcaacaggcccagcaaaaattgttattccaccaggaacatttactacatgagaaactatttttcaaggcccatgttcatgtccaaagcccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64879" stop="65965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65179" g_stop="65432" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65433" i_stop="65539" i_length="107">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65540" g_stop="65665" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="380" r_length="126" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E364131" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65179" e_stop="65432"/>
          <exon e_start="65540" e_stop="65665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATTTCTCACTTTT-TTTCTTCTTTATTTTTATTTTTTTCAATTTCCTATTTAGGCCACAACCACAATGGCTATTCCAAAAGGATTAGAAATCAATAATATTGTAGGATTATTCTTACTTTTGGGTATAGCCATTTTATCATCAAAAGTTGCAGAATGTGCACCTTTTGGTTCGCGTCGTGGCCTTATGGAGACAGTTTTCGATGTTACCAAGCACGGAGCTAGACCAGATCCCACTGCAGATAGCACTCGGGTAAAACCCAAACTTATATTTAAATTTCTAGCTCTGCGCACTCTGCCGTAAAGCCAAAAATAAATTGGAGGCCTAACTTTTTTCTTTTTTGTTGTTGGTTTTAATAGGGATTTATGATGGCATGGAGAGCAGCATGTCAATCAACAGGCCCAGCAAAAGTTGTTATTCCACCAGGAACATTTACTACAGGAGAAACTATTTTTCAAGGCCCATGTACATGTCCAAAGCCCATT</genome_strand>
        <mrna_strand>TTTAATTTCTCACTTTTTTTTCTTCTTTATTTTTA-TTGTTTCAATTTCCTATTTAGGCCACAACCACAATGGCTATTCCAAAAGGATTAGAAATCAATAATATTGTAGGATTATTCTTACTTTTGGGTATAGCCATTTTATCATCAAAAGTTGCAGAATGTGCACCTTTTGGTTCGCGTCGTGGCCTTATGGAGACAGTTTTCGATGTTACCAAGCACGGAGCTAGACCAGATCCCACTGCAGATAGCACTCGG...........................................................................................................GGATTTATGATGGCATGGAGAGCAGCATGTCAATCAACAGGCCCAGCAAAAATTGTTATTCCACCAGGAACATTTACTACATGAGAAACTATTTTTCAAGGCCCATGTTCATGTCCAAAGCCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E747280" ref_strand="+" ref_description="SGN-E747280 [GI|47104682]">
      <seq>ttaatttctcacttttttttcttctttatttttattttttcaatttcctatttaggccacaaccacaatggctattccaaaaggattagaaatcaataatattgtaggattattcttacttttgggtatagccattttatcatcaaaagttgcagaatgtgcaccttttggttcgcgtcgtggccttatggagacagttttcgatgttaccaagcacggagctagaccagatcccactgcagatagcactcggggatttatgatggcatggagagcagcatgtcaatcaacaggcccagcaaaaattgttattccaccaggaacatttactacaggagaaactatttttcaaggcccatgtacatgtccaaagcccattattattgaaattcaagggacagtattgtcaaatacagacataagtttgtactcacgtgcctcgtggatatccctcgaacacgtggacggtgtcgttattacaggtggcggaactctaaacggacaaggaaatgccagctggcagtatgctgacaaatccggaagcgctcctcctctccctatctctcttgtatttcaaactgtgaagagttcttccatcaatggcataaattttgtggattccaaaggtgtccatttgaaaattactgatagtaatgacattacagtttcaaaaatcaagattacagcaccagcaacaagtccaaatactgatggaattcatataagtgaaacaattaatatcaatgttactgatagcaacattgggacaggtgatgattgcattagtgttggacatggtactaccaatatttttgtcaataatattcattgtggccctggacatggaataagcattggaagccttggaaagagaccagatgagaaggatgttacaaaagtttatataaaaaattgtacattccacagtacaacaaatggtgcaagaatcaagacttatatggattcatctccactacaagtttctgatgttgtttatgaagatattgttttggaggatgttaaaaatccaattcttattgatcaacactataattccaagaacaaggttgagccatcaaaagtgaaactaaaagatattcacttcaagaacataagggggacaacaaattcaaaagctccagtatcacttaattgcagtgaagcagctccatgtgaaggagttgaattggctgatatcaatatagctccatctggtacaactggacctctacaaggagcaacatgtcaaaatgccaagacagtattcaatggaaaaactaatgttccagcatgtaaataattacattacattattaatcaaatcatgtccatatgaagtatgtgtataaatttcaatataaccatgtaattttgtttatggtttattataatatttatttaattttttttcgatgcctggaaatagaaaaaaaaagataaaatttagcgcttgacgcatattagctacggatgtagctagttagggttagtttcttagctaaatacatgcatgtgttcttgtgtatccacataatttatttatggttaattacgatatttttctttttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64880" stop="87942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65180" g_stop="65432" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65433" i_stop="65539" i_length="107">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65540" g_stop="65848" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="562" r_length="309" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65849" i_stop="65932" i_length="84">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.131" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65933" g_stop="66222" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="852" r_length="290" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66223" i_stop="66360" i_length="138">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66361" g_stop="66580" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="853" r_stop="1072" r_length="220" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66581" i_stop="67635" i_length="1055">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67636" g_stop="68045" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1073" r_stop="1473" r_length="401" r_score="0.956"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68046" i_stop="68238" i_length="193">
            <donor d_prob="0.003" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68239" g_stop="68270" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1474" r_stop="1504" r_length="31" r_score="0.719"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68271" i_stop="71000" i_length="2730">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.758" a_score="0.67"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="71001" g_stop="71082" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1505" r_stop="1585" r_length="81" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E747280" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>1596</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65180" e_stop="65432"/>
          <exon e_start="65540" e_stop="65848"/>
          <exon e_start="65933" e_stop="66222"/>
          <exon e_start="66361" e_stop="66580"/>
          <exon e_start="67636" e_stop="68045"/>
          <exon e_start="68239" e_stop="68270"/>
          <exon e_start="71001" e_stop="71082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTTCTCACTTTTT-TTCTTCTTTATTTTTATTTTTTTCAATTTCCTATTTAGGCCACAACCACAATGGCTATTCCAAAAGGATTAGAAATCAATAATATTGTAGGATTATTCTTACTTTTGGGTATAGCCATTTTATCATCAAAAGTTGCAGAATGTGCACCTTTTGGTTCGCGTCGTGGCCTTATGGAGACAGTTTTCGATGTTACCAAGCACGGAGCTAGACCAGATCCCACTGCAGATAGCACTCGGGTAAAACCCAAACTTATATTTAAATTTCTAGCTCTGCGCACTCTGCCGTAAAGCCAAAAATAAATTGGAGGCCTAACTTTTTTCTTTTTTGTTGTTGGTTTTAATAGGGATTTATGATGGCATGGAGAGCAGCATGTCAATCAACAGGCCCAGCAAAAGTTGTTATTCCACCAGGAACATTTACTACAGGAGAAACTATTTTTCAAGGCCCATGTACATGTCCAAAGCCCATTATTATTGAAATTCAAGGGACAGTATTGTCAAATACAGACATAAGTTTGTACTCACGTGCCTCATGGATATCCCTCGAACACGTGGACGGTGTCGTTATTACAGGTGGCGGAACTCTAAACGGACAAGGAAATGCCAGCTGGCAGTATGCTGACAAAAGCGGAAACTCTCCTCCTCTCCCTACGGTAAGTACAGATGATCACTCAATTTATAGTTGCTCGCTCTTCACTATTAAAAGTTATTAATTATTATTATATTTGTGTGTGTAGTCTCTTGTATTTCAAACTGTGAAGAGTTCTTCCATCAATGGCATAAATTTTGTGGATTCCAAAGGTGTCCATTTGAAAGTTACTGATAGTAATGACATTACAGTTTCAAAAATCAAGATTACAGCACCAGCAACAAGTCCAAATACTGATGGAATTCATATAAGTGAAACAATTAATATCAATGTTACTGATAGCAACATTGGGACAGGTGATGATTGCATTAGTGTTGGACATGGTACTACCAATATTTTTGTCAATAATATTCATTGTGGCCCTGGACATGGAATAAGGTTAGTTTTTTAATTAATAATGATCTTTTCATAGTGTTAAAATAGAAAATCATCAAGAATTGAGGGATTAAATGTACTACTAGCCTTTTCAAAAAAATGTAGGCATTTAAAGATTCTAAATGTAGTTTTTTTGTGCAGTATTGGAAGCCTTGGAAAGAGACCAGATGAGAAGGATGTTACAAAAGTTTATATAAAAAATTGTACATTCCACAGTACAACAAATGGTGCAAGAATCAAGACTTATATGGATTCATCTCCACTACAAGTTTCTGATGTTGTTTATGAAGATATTGTCTTGGAGGATGTTAAAAATCCAATTCTTATTGATCAACACTATAATTCCAAGAACAAGGTTGAGGTAAAGTTATCATAACTACTTTTTACTAACTAATTACTCGACACTAAGGGGGAAAAGGGTCTGATATACCCCCTCAACTTTGTCATTTAGAGCTGATATACTCCTCGTTATAAAAGTGGCTCATATATAAGTTTTAATCTAAGTTTTTATTATTTTTTTCTAAAAAATATAATTCCATATAAATAAATTTAATCCTCGTCAAACTTATTTTTTTAGACTTTTTTTTGTTTCAATGACTAATTTATAATTATTATTTTGATAATCAAATTTATTTATGTTTCACTAATATTCTTGTAAAACTTATTATAGATGACCAAATTTTTTCTTCGAATACGAAATTAAATTACAATACGCACAAAAAAATAGTTTAAATTTTTTTCCTTTAAACTAAGGAATGAAAGAAAAAAACATAATAAGAATAAGAAACCCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCTCTAAATAATTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTCCGTTAAATGAAGGGTATATGTGAGCCATGTTTGTGACGACAGGGGTATATGTGAGCCGTTTTTATAACGGTAAGGACATATATGAGTCACTTTTATAACGAAGGGTATATCAGCTCCAAATGACAAAATTGAGGGATATATCAGACCCTTTTCCCTTTTTTTAATATTCAGGCCTTGCTCGACAGAGTTAATTAATTACTCCATACCTATGTCAATGAGAGATAACAAGTACCTCAAGTTCTATTTAGGACAATAGTGTTAAGATCACCATGAATTGAAATACTAATACAATTTTAAATTGTGATTTTTTCGACTGATCCAAACCTTACTAAGCGGAGTTAGATGAGAGATGATAAATATCATGGTAAGCTATTAGTATATGATCGTAACACATGGATTTGAGTTAATATTACTAGTTTTTTTTTTAGATCAATTTCACTTATACATTATTATATTTTGTTTGGTATAGCCATCAAAAGTGAAACTAAAAGATATTCACTTCAAGAACATAAGGGGGACAACAAATACAAAAGCTCCAGTATCACTTAATTGCAGTGAAGCAGCTCCATGTGAAGGAGTTGAATTGGCTGATATTGATATAGCTCCATCTGGTACAACTGGACCTCTACAAGGAGCAACATGTCAAAATGCCAAGACAGTATTCAATGGAAAAACTAATGTTCCAGCATGTAAATAATTACATTACATTATTAATCAAATCATGTCCATATGAAAAAATGTGTATAAATTTCAATATAACCATGTAATTTTGTTTATGGTTTATTATAATATTTATTTATATTTTTTTTTTCGATGCCTGGAAATAGAAAAAAAAGAAGAAGATAAAATTTAGCGCTTGACGCATATTAGCTAGTTAGGGTTAGTTTCTTAGCCATAATAATGCATGTTATAAGTAGTTAGGGATACCAACCCCTAGCTAAATACATGCATGTGTTCTTGTGTATCCACATAATTTATTTATGGTTAATTACGATGTTTTTTCTTTTTTTCTTGGGTTTTTTGGGAAAAAAATAATTGAAATTTAGCTTGGTTCATATTAGCTATAAAATTATATATAGTAAAGGTTATTTTCTAATGGAAAATATTTCATTCTTTTCCACAAATTTCAATCTATCACCAAATAAGAAAGGTTTTAATTTTTTTTGTTAGAATTGAGAAATTATCTAATCTTATAAGTAGACAAAGTTATTTTTTATTATTAAATAGAAGTGACATGAGAAAAGAAAAGGAAAGTTACATGATTTGGCAAATTTATACTGTTAATTACTCATCATAGCTATAGTTTGTTATAACTATTACTTGTGATTAATATTATACATAAATTACGTGGGCTGACTTTGAGTTTGTATAATTAGTCATGTTTTTTAATAGGGCAACTTTCACATATGGCAAACAAAAAATTCATATTTGTATGCTATAGCAAAGTTTGCATAATTGCGCTCCATAGCAAACATAAAATTGTATAATTCGCTATACATATACAATTGTATAATTCGCTGGCCTATTTCGCTGCAATTGTATAATTTGCTTTGCATACAGTTGAACCGAATTAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCACTGTATACAAAAACAGAAACACAATATATACACTTCTGTTATATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCGTTGCCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACAAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAATTATACACTTCTGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGAGAGACGCTGGCAAATTTTAGCTAATGTTTGCTATGGAGCACAATTAAATCAAACCCTAGCTATTTCATTTAATTTAGGTTATTAGTTTGCTATTATATACAATTTTCCCTTTTTAATATATAACTCGCCAGAATATGCAATTACATATGCATAATATACAATTATTTAACATATATATATATATATATATATATATATATATATATATATATACAACTCACCTCTCTCCTACTCTATGCCCTCTCTCGCTCGCCTCTCTCCTCCCTCTCCCAATCTTGCTCGCGATATATACAAACGCATATATAATATACAATTATATACATATACAATTCATCTCTTTCTCCCTCTCTGCCCCCCTCCCCCTCCCCCTTTCGCTCGCTTCTCTCCTTCCTCTCCCAATCTGGCTCGCCTCTCTCCTTCCTCTCCCAGTCTCACTCGTCTCTTTCATCGCTCTCCCAATCTCACGTGCCATGAATGCATATGTATAACATACAATTATCTAACTGATATACATATACAATTTACCTTTCTCCCACTCTTTTCCCCCTCTCTCACCTCTCTCCTCTCTCTCTCAGTCTCGATCGCCTCTCTCCTCCATATAACATGTAGTTATGAATTGTAATTATCAAACTATAGCTATTGAGAATAATTAGACTATTTTTAAGTGGCTATATATGAAAGTTCCCAAGAAATACCAATATATTAGTCAAAAATTTGTTCACTCCCTAATAATTATTTAATCATCATCTTATAATTCTATATTATAAAAATATATAACTTGATCACGTGACTCTAAGGACTCTAGATTGTATATACGCCACGACTAGCTGGTTTTGGGTTCCCTAATGAATTCATGGTCTAAACTCTGAACTATATAATTCTAGCACTTAAGAGACAATTTAATACATATATAACAAATTTGAGAACAAATACATTTTCTAGTAATTTGTATTCAAAGTTTACTTAAATATTGAAAAATTAAATTATAAATTGTGAAATATATATATATATATATATTGAATTTTGTAAATTGCTACATCTTAACGTATTTAGGTGAAAATTAACTAATTCTGGGCCCAGGTGACGTTTCACTTCTAATCACAACTCATTTGTTGATTCTTCCATACAATAGATCACATAAATTCATGTCTATAAGTAGTGATAATTGTCTTATAAAGATTTGCTTTAGTTATGACTTTAATTAAGTCACTGCTTATGAATCACCAATTCATTTTTTTACGATCAATAACCTGGCTCCTCCCCAATCTAACAGACTTATTTTTATCATTTTTCAAATTTTTCTCACAAACCTTCAATAGTGTTCTTATCTTGAATTTTATACTCAATCTTTATTTAATGAGCTATTATTCATCATTACCATTGCATAAAAAAGTTTGTATAACATGATTTCTATATTGTGTTATAATGATAGAAGAAGATGAGCAACAAATATGTTTTTTTTTTGGTCTAAAGTTGGTCAACTATGAAATATTAAAAAATTTGAAAAAATTTCTTAAAACTGGCTACTAGTGCAATTAGTTTTAATCCTCAGTACTAAGAGGCCCATTGGACCAAAGACAGTTTCTAAGCCCATTTCGAAAAACCCTAGGGCATTAATTTCAGAAGTATAAAAGCCTCCTCTCCCAACTACTGTCCATTTCTCCTTCGTTCGCAGCTTCACAAAATCGAAAATGGTTTCGTTGAAGCTCCAGAAGCGGCTCGCCGCTAGTGTCCTCAAGTGTGGAAGAGGCAAAGTTTGGCTTGATCCTAATGAAGGCAATGAAATCTCCATGGCCAATTCCCGTATGTTTCTGTTTTCTGTTTGTTATCAATATCTATTTACGTTTATGCTATCTCTTTTAATCTCTTGTTTGTATGTTATGGCTTCTGATTGTGAAAGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>TTAATTTCTCACTTTTTTTTCTTCTTTATTTTTA-TTTTTTCAATTTCCTATTTAGGCCACAACCACAATGGCTATTCCAAAAGGATTAGAAATCAATAATATTGTAGGATTATTCTTACTTTTGGGTATAGCCATTTTATCATCAAAAGTTGCAGAATGTGCACCTTTTGGTTCGCGTCGTGGCCTTATGGAGACAGTTTTCGATGTTACCAAGCACGGAGCTAGACCAGATCCCACTGCAGATAGCACTCGG...........................................................................................................GGATTTATGATGGCATGGAGAGCAGCATGTCAATCAACAGGCCCAGCAAAAATTGTTATTCCACCAGGAACATTTACTACAGGAGAAACTATTTTTCAAGGCCCATGTACATGTCCAAAGCCCATTATTATTGAAATTCAAGGGACAGTATTGTCAAATACAGACATAAGTTTGTACTCACGTGCCTCGTGGATATCCCTCGAACACGTGGACGGTGTCGTTATTACAGGTGGCGGAACTCTAAACGGACAAGGAAATGCCAGCTGGCAGTATGCTGACAAATCCGGAAGCGCTCCTCCTCTCCCTATC....................................................................................TCTCTTGTATTTCAAACTGTGAAGAGTTCTTCCATCAATGGCATAAATTTTGTGGATTCCAAAGGTGTCCATTTGAAAATTACTGATAGTAATGACATTACAGTTTCAAAAATCAAGATTACAGCACCAGCAACAAGTCCAAATACTGATGGAATTCATATAAGTGAAACAATTAATATCAATGTTACTGATAGCAACATTGGGACAGGTGATGATTGCATTAGTGTTGGACATGGTACTACCAATATTTTTGTCAATAATATTCATTGTGGCCCTGGACATGGAATAAG..........................................................................................................................................CATTGGAAGCCTTGGAAAGAGACCAGATGAGAAGGATGTTACAAAAGTTTATATAAAAAATTGTACATTCCACAGTACAACAAATGGTGCAAGAATCAAGACTTATATGGATTCATCTCCACTACAAGTTTCTGATGTTGTTTATGAAGATATTGTTTTGGAGGATGTTAAAAATCCAATTCTTATTGATCAACACTATAATTCCAAGAACAAGGTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATCAAAAGTGAAACTAAAAGATATTCACTTCAAGAACATAAGGGGGACAACAAATTCAAAAGCTCCAGTATCACTTAATTGCAGTGAAGCAGCTCCATGTGAAGGAGTTGAATTGGCTGATATCAATATAGCTCCATCTGGTACAACTGGACCTCTACAAGGAGCAACATGTCAAAATGCCAAGACAGTATTCAATGGAAAAACTAATGTTCCAGCATGTAAATAATTACATTACATTATTAATCAAATCATGTCCATATG-AAGTATGTGTATAAATTTCAATATAACCATGTAATTTTGTTTATGGTTTATTATAATATTTATTTA-A--TTTTTTTTCGATGCCTGGAAATAG---AAAAA-AA-AAGATAAAATTTAGCGCTTGACGCATATTAGCTACGGATG.................................................................................................................................................................................................TAGCTAGTTAGGGTTAGTTTCTTA-GCTAAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-CATGCATGTGTTCTTGTGTATCCACATAATTTATTTATGGTTAATTACGATATTTTTCTTTTTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E362215" ref_strand="+" ref_description="SGN-E362215 [cLPP-11-J16]">
      <seq>ttaatttctcacttttttttcttctttatttttattttttcaatttcctatttaggccacaaccacaatggctattccaaaaggattagaaatcaataatattgtacgattattcttacttttgggtatagccattttatcatcaaaagttgcagaatgtgcaccttttggttcgcgtcgtggccttatggagacagttttcgatgttaccaagcacggagctagaccagatcccactgcagatagcactcggggatttatgatggcatggagagcagcatgtcaatcaacaggcccagcaaaaattgttattccaccaggaacatttactacaggagaaactatttttcaaggcccatgtacatgtccaaagcccattattattgaaattcaagggacagtattgtcaaatacagacataagtttgtactcacgtgcctcgtggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64880" stop="66033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65180" g_stop="65432" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65433" i_stop="65539" i_length="107">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65540" g_stop="65733" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="447" r_length="194" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E362215" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65180" e_stop="65432"/>
          <exon e_start="65540" e_stop="65733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTTCTCACTTTTT-TTCTTCTTTATTTTTATTTTTTTCAATTTCCTATTTAGGCCACAACCACAATGGCTATTCCAAAAGGATTAGAAATCAATAATATTGTAGGATTATTCTTACTTTTGGGTATAGCCATTTTATCATCAAAAGTTGCAGAATGTGCACCTTTTGGTTCGCGTCGTGGCCTTATGGAGACAGTTTTCGATGTTACCAAGCACGGAGCTAGACCAGATCCCACTGCAGATAGCACTCGGGTAAAACCCAAACTTATATTTAAATTTCTAGCTCTGCGCACTCTGCCGTAAAGCCAAAAATAAATTGGAGGCCTAACTTTTTTCTTTTTTGTTGTTGGTTTTAATAGGGATTTATGATGGCATGGAGAGCAGCATGTCAATCAACAGGCCCAGCAAAAGTTGTTATTCCACCAGGAACATTTACTACAGGAGAAACTATTTTTCAAGGCCCATGTACATGTCCAAAGCCCATTATTATTGAAATTCAAGGGACAGTATTGTCAAATACAGACATAAGTTTGTACTCACGTGCCTCATGGAT</genome_strand>
        <mrna_strand>TTAATTTCTCACTTTTTTTTCTTCTTTATTTTTA-TTTTTTCAATTTCCTATTTAGGCCACAACCACAATGGCTATTCCAAAAGGATTAGAAATCAATAATATTGTACGATTATTCTTACTTTTGGGTATAGCCATTTTATCATCAAAAGTTGCAGAATGTGCACCTTTTGGTTCGCGTCGTGGCCTTATGGAGACAGTTTTCGATGTTACCAAGCACGGAGCTAGACCAGATCCCACTGCAGATAGCACTCGG...........................................................................................................GGATTTATGATGGCATGGAGAGCAGCATGTCAATCAACAGGCCCAGCAAAAATTGTTATTCCACCAGGAACATTTACTACAGGAGAAACTATTTTTCAAGGCCCATGTACATGTCCAAAGCCCATTATTATTGAAATTCAAGGGACAGTATTGTCAAATACAGACATAAGTTTGTACTCACGTGCCTCGTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374306" ref_strand="+" ref_description="SGN-E374306 [TUS-33-J24]">
      <seq>taatttctcacttttttttcttctttatttttattttttcaatttcctatttaggccacaaccacaatggctattccaaaaggattagaaatcaataatattgtaggattattcttacttttgggtatagccattttatcatcaaaagttgcagaatgtgcaccttttggttcgcgtcgtggccttatggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64881" stop="65672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65181" g_stop="65372" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E374306" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>192</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65181" e_stop="65372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTCTCACTTTTTT-TCTTCTTTATTTTTATTTTTTTCAATTTCCTATTTAGGCCACAACCACAATGGCTATTCCAAAAGGATTAGAAATCAATAATATTGTAGGATTATTCTTACTTTTGGGTATAGCCATTTTATCATCAAAAGTTGCAGAATGTGCACCTTTTGGTTCGCGTCGTGGCCTTATGGAG</genome_strand>
        <mrna_strand>TAATTTCTCACTTTTTTTTCTTCTTTATTTTTA-TTTTTTCAATTTCCTATTTAGGCCACAACCACAATGGCTATTCCAAAAGGATTAGAAATCAATAATATTGTAGGATTATTCTTACTTTTGGGTATAGCCATTTTATCATCAAAAGTTGCAGAATGTGCACCTTTTGGTTCGCGTCGTGGCCTTATGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E359939" ref_strand="+" ref_description="SGN-E359939 [cLPP-9-E1]">
      <seq>tttctcacttttttttcttctttatttttattttttcaatttcctatttaggccacaaccacaatggctattccaaaaggattagaaatcaataatattgtaggattattcttacttttgggtatagccattttatcatcaaaagttgcagaatgtgcaccttttggttcgcgtcgtggccttatggagacagttttcgatgttaccaagcacggagctagaccagatcccactgcagatagcactcggggatttatgatggcatggagagcagcatgtcaatcaacaggcccagcaaaaattgttattccaccaggaacatttactacaggagaaactatttttcaaggcccatgtacatgtccaaagcccattattattgaaattcaagggacagtattgtcaaatacagacataagtttgtactcacgtgcctcgtggatatccctcgaacacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64884" stop="66048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65184" g_stop="65432" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65433" i_stop="65539" i_length="107">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65540" g_stop="65748" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="458" r_length="209" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E359939" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65184" e_stop="65432"/>
          <exon e_start="65540" e_stop="65748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCAC-TTTTTTTCTTCTTTATTTTTATTTTTTTCAATTTCCTATTTAGGCCACAACCACAATGGCTATTCCAAAAGGATTAGAAATCAATAATATTGTAGGATTATTCTTACTTTTGGGTATAGCCATTTTATCATCAAAAGTTGCAGAATGTGCACCTTTTGGTTCGCGTCGTGGCCTTATGGAGACAGTTTTCGATGTTACCAAGCACGGAGCTAGACCAGATCCCACTGCAGATAGCACTCGGGTAAAACCCAAACTTATATTTAAATTTCTAGCTCTGCGCACTCTGCCGTAAAGCCAAAAATAAATTGGAGGCCTAACTTTTTTCTTTTTTGTTGTTGGTTTTAATAGGGATTTATGATGGCATGGAGAGCAGCATGTCAATCAACAGGCCCAGCAAAAGTTGTTATTCCACCAGGAACATTTACTACAGGAGAAACTATTTTTCAAGGCCCATGTACATGTCCAAAGCCCATTATTATTGAAATTCAAGGGACAGTATTGTCAAATACAGACATAAGTTTGTACTCACGTGCCTCATGGATATCCCTCGAACACGT</genome_strand>
        <mrna_strand>TTTCTCACTTTTTTTTCTTCTTTATTTTTA-TTTTTTCAATTTCCTATTTAGGCCACAACCACAATGGCTATTCCAAAAGGATTAGAAATCAATAATATTGTAGGATTATTCTTACTTTTGGGTATAGCCATTTTATCATCAAAAGTTGCAGAATGTGCACCTTTTGGTTCGCGTCGTGGCCTTATGGAGACAGTTTTCGATGTTACCAAGCACGGAGCTAGACCAGATCCCACTGCAGATAGCACTCGG...........................................................................................................GGATTTATGATGGCATGGAGAGCAGCATGTCAATCAACAGGCCCAGCAAAAATTGTTATTCCACCAGGAACATTTACTACAGGAGAAACTATTTTTCAAGGCCCATGTACATGTCCAAAGCCCATTATTATTGAAATTCAAGGGACAGTATTGTCAAATACAGACATAAGTTTGTACTCACGTGCCTCGTGGATATCCCTCGAACACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E362913" ref_strand="+" ref_description="SGN-E362913 [cLPP-2-A11]">
      <seq>tttttttctttcttttatttttattttttcaatttcctatttaggccacaaccaccaatggctattccaaaagggattagaaatcaataatattgtaggattattcttacttttgggtatagccattttatcatcaaaagttgcagaatgtgcacctttggttcgcgtcgtggccttatggagacagttttcgatgttaccaagcacggagctagaccagatcccactgcagatagcactcggggatttatgatggcatggagagcagcatgtcaatcaacaggcccagcaaaaattgttattccaccaggaacatttactaccaggagaaactatttttcaaggcccatgtaccatgtccaaagcccattattattgaaattcaagggaccagtattgtcaaatacagacataagtttgtactcacgtgcctcgtggatatccctcgaacacgtggacggtgtcgttattacaggtggcggaactctaaacggacaaggaaatgccagctggcagtatgctgacaaatccggaagcgctcctcctctccctatctctcttgtatttcaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64892" stop="66146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65192" g_stop="65432" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65433" i_stop="65539" i_length="107">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65540" g_stop="65848" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="555" r_length="312" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65849" i_stop="65932" i_length="84">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.131" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65933" g_stop="65950" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="573" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E362913" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65192" e_stop="65432"/>
          <exon e_start="65540" e_stop="65848"/>
          <exon e_start="65933" e_stop="65950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTC-TTCTTTATTTTTATTTTTTTCAATTTCCTATTTAGGCCACAACCA-CAATGGCTATTCCAAAA-GGATTAGAAATCAATAATATTGTAGGATTATTCTTACTTTTGGGTATAGCCATTTTATCATCAAAAGTTGCAGAATGTGCACCTTTTGGTTCGCGTCGTGGCCTTATGGAGACAGTTTTCGATGTTACCAAGCACGGAGCTAGACCAGATCCCACTGCAGATAGCACTCGGGTAAAACCCAAACTTATATTTAAATTTCTAGCTCTGCGCACTCTGCCGTAAAGCCAAAAATAAATTGGAGGCCTAACTTTTTTCTTTTTTGTTGTTGGTTTTAATAGGGATTTATGATGGCATGGAGAGCAGCATGTCAATCAACAGGCCCAGCAAAAGTTGTTATTCCACCAGGAACATTTACTA-CAGGAGAAACTATTTTTCAAGGCCCATGTA-CATGTCCAAAGCCCATTATTATTGAAATTCAAGGGA-CAGTATTGTCAAATACAGACATAAGTTTGTACTCACGTGCCTCATGGATATCCCTCGAACACGTGGACGGTGTCGTTATTACAGGTGGCGGAACTCTAAACGGACAAGGAAATGCCAGCTGGCAGTATGCTGACAAAAGCGGAAACTCTCCTCCTCTCCCTACGGTAAGTACAGATGATCACTCAATTTATAGTTGCTCGCTCTTCACTATTAAAAGTTATTAATTATTATTATATTTGTGTGTGTAGTCTCTTGTATTTCAAACT</genome_strand>
        <mrna_strand>TTTTTTTCTTTCTTTTATTTTTATTTTTTCAATTTCCTATTTAGGCCACAACCACCAATGGCTATTCCAAAAGGGATTAGAAATCAATAATATTGTAGGATTATTCTTACTTTTGGGTATAGCCATTTTATCATCAAAAGTTGCAGAATGTGCACC-TTTGGTTCGCGTCGTGGCCTTATGGAGACAGTTTTCGATGTTACCAAGCACGGAGCTAGACCAGATCCCACTGCAGATAGCACTCGG...........................................................................................................GGATTTATGATGGCATGGAGAGCAGCATGTCAATCAACAGGCCCAGCAAAAATTGTTATTCCACCAGGAACATTTACTACCAGGAGAAACTATTTTTCAAGGCCCATGTACCATGTCCAAAGCCCATTATTATTGAAATTCAAGGGACCAGTATTGTCAAATACAGACATAAGTTTGTACTCACGTGCCTCGTGGATATCCCTCGAACACGTGGACGGTGTCGTTATTACAGGTGGCGGAACTCTAAACGGACAAGGAAATGCCAGCTGGCAGTATGCTGACAAATCCGGAAGCGCTCCTCCTCTCCCTATC....................................................................................TCTCTTGTATTTCAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E359727" ref_strand="+" ref_description="SGN-E359727 [cLPP-5-K16]">
      <seq>ttattcttacttttgggtatagccattttatcatcaaaagttgcagaatgtgcaccttttggttcgcgtcgtggccttatggagacagttttcgatgttaccaagcacggagctagaccagatcccactgcagatagcactcggggatttatgatggcatggagagcaacatgtcaatcaacaggcccaacaaaaattgttattccaccaggaacatttactacaggagaaactatttttcaaggcccatgtacatgtccaaagcccattattattgaaattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64989" stop="65979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65289" g_stop="65432" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65433" i_stop="65539" i_length="107">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65540" g_stop="65679" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="284" r_length="140" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E359727" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>284</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65289" e_stop="65432"/>
          <exon e_start="65540" e_stop="65679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTCTTACTTTTGGGTATAGCCATTTTATCATCAAAAGTTGCAGAATGTGCACCTTTTGGTTCGCGTCGTGGCCTTATGGAGACAGTTTTCGATGTTACCAAGCACGGAGCTAGACCAGATCCCACTGCAGATAGCACTCGGGTAAAACCCAAACTTATATTTAAATTTCTAGCTCTGCGCACTCTGCCGTAAAGCCAAAAATAAATTGGAGGCCTAACTTTTTTCTTTTTTGTTGTTGGTTTTAATAGGGATTTATGATGGCATGGAGAGCAGCATGTCAATCAACAGGCCCAGCAAAAGTTGTTATTCCACCAGGAACATTTACTACAGGAGAAACTATTTTTCAAGGCCCATGTACATGTCCAAAGCCCATTATTATTGAAATTCA</genome_strand>
        <mrna_strand>TTATTCTTACTTTTGGGTATAGCCATTTTATCATCAAAAGTTGCAGAATGTGCACCTTTTGGTTCGCGTCGTGGCCTTATGGAGACAGTTTTCGATGTTACCAAGCACGGAGCTAGACCAGATCCCACTGCAGATAGCACTCGG...........................................................................................................GGATTTATGATGGCATGGAGAGCAACATGTCAATCAACAGGCCCAACAAAAATTGTTATTCCACCAGGAACATTTACTACAGGAGAAACTATTTTTCAAGGCCCATGTACATGTCCAAAGCCCATTATTATTGAAATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374305" ref_strand="+" ref_description="SGN-E374305 [TUS-33-J24](-)">
      <seq>aggatgttacaaaagtttatataaaaaattgtacattccacagtacaacaaatggtgcaagaatcaagacttatatggattcatctccactacaagtttctgatgttgtttatgaagatattgttttggaggatgttaaaaatccaattcttattgatcaacactataattccaagaacaaggttgagccatcaaaagtgaaactaaaagatattcacttcaagaacataagggggacaacaaattcaaaagctccagtatcacttaattgcagtgaagcagctccatgtgaaggagttgaattggctgatatcaatatagctccatctggtacaactggacctctacaaggagcaacatgtcaaaatgccaagacagtattcaatggaaaaactaatgttccagcatgtaaataattacattacattattaatcaaatcatgtccatatgaagtatgtgtataaatttcaatataaccatgtaattttgtttatggtttattataatatttatttaattttttttcgatgcctggaaatagaaaaaaaaagataaaatttagcgcttgacgcatattagctacggatgtagctagttagggttagtttcttagctaaatacatgcatgtgttcttgtgtatccacataatttatttatggttaattacgatatttttctttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="66093" stop="87933"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66393" g_stop="66580" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66581" i_stop="67635" i_length="1055">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67636" g_stop="68045" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="589" r_length="401" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68046" i_stop="68238" i_length="193">
            <donor d_prob="0.003" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68239" g_stop="68261" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="612" r_length="23" r_score="0.739"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68262" i_stop="71000" i_length="2739">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.758" a_score="0.67"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71001" g_stop="71082" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="694" r_length="82" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E374305" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66393" e_stop="66580"/>
          <exon e_start="67636" e_stop="68045"/>
          <exon e_start="68239" e_stop="68261"/>
          <exon e_start="71001" e_stop="71082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATGTTACAAAAGTTTATATAAAAAATTGTACATTCCACAGTACAACAAATGGTGCAAGAATCAAGACTTATATGGATTCATCTCCACTACAAGTTTCTGATGTTGTTTATGAAGATATTGTCTTGGAGGATGTTAAAAATCCAATTCTTATTGATCAACACTATAATTCCAAGAACAAGGTTGAGGTAAAGTTATCATAACTACTTTTTACTAACTAATTACTCGACACTAAGGGGGAAAAGGGTCTGATATACCCCCTCAACTTTGTCATTTAGAGCTGATATACTCCTCGTTATAAAAGTGGCTCATATATAAGTTTTAATCTAAGTTTTTATTATTTTTTTCTAAAAAATATAATTCCATATAAATAAATTTAATCCTCGTCAAACTTATTTTTTTAGACTTTTTTTTGTTTCAATGACTAATTTATAATTATTATTTTGATAATCAAATTTATTTATGTTTCACTAATATTCTTGTAAAACTTATTATAGATGACCAAATTTTTTCTTCGAATACGAAATTAAATTACAATACGCACAAAAAAATAGTTTAAATTTTTTTCCTTTAAACTAAGGAATGAAAGAAAAAAACATAATAAGAATAAGAAACCCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCTCTAAATAATTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTCCGTTAAATGAAGGGTATATGTGAGCCATGTTTGTGACGACAGGGGTATATGTGAGCCGTTTTTATAACGGTAAGGACATATATGAGTCACTTTTATAACGAAGGGTATATCAGCTCCAAATGACAAAATTGAGGGATATATCAGACCCTTTTCCCTTTTTTTAATATTCAGGCCTTGCTCGACAGAGTTAATTAATTACTCCATACCTATGTCAATGAGAGATAACAAGTACCTCAAGTTCTATTTAGGACAATAGTGTTAAGATCACCATGAATTGAAATACTAATACAATTTTAAATTGTGATTTTTTCGACTGATCCAAACCTTACTAAGCGGAGTTAGATGAGAGATGATAAATATCATGGTAAGCTATTAGTATATGATCGTAACACATGGATTTGAGTTAATATTACTAGTTTTTTTTTTAGATCAATTTCACTTATACATTATTATATTTTGTTTGGTATAGCCATCAAAAGTGAAACTAAAAGATATTCACTTCAAGAACATAAGGGGGACAACAAATACAAAAGCTCCAGTATCACTTAATTGCAGTGAAGCAGCTCCATGTGAAGGAGTTGAATTGGCTGATATTGATATAGCTCCATCTGGTACAACTGGACCTCTACAAGGAGCAACATGTCAAAATGCCAAGACAGTATTCAATGGAAAAACTAATGTTCCAGCATGTAAATAATTACATTACATTATTAATCAAATCATGTCCATATGAAAAAATGTGTATAAATTTCAATATAACCATGTAATTTTGTTTATGGTTTATTATAATATTTATTTATATTTTTTTTTTCGATGCCTGGAAATAGAAAAAAAAGAAGAAGATAAAATTTAGCGCTTGACGCATATTAGCTAGTTAGGGTTAGTTTCTTAGCCATAATAATGCATGTTATAAGTAGTTAGGGATACCAACCCCTAGCTAAATACATGCATGTGTTCTTGTGTATCCACATAATTTATTTATGGTTAATTACGATGTTTTTTCTTTTTTTCTTGGGTTTTTTGGGAAAAAAATAATTGAAATTTAGCTTGGTTCATATTAGCTATAAAATTATATATAGTAAAGGTTATTTTCTAATGGAAAATATTTCATTCTTTTCCACAAATTTCAATCTATCACCAAATAAGAAAGGTTTTAATTTTTTTTGTTAGAATTGAGAAATTATCTAATCTTATAAGTAGACAAAGTTATTTTTTATTATTAAATAGAAGTGACATGAGAAAAGAAAAGGAAAGTTACATGATTTGGCAAATTTATACTGTTAATTACTCATCATAGCTATAGTTTGTTATAACTATTACTTGTGATTAATATTATACATAAATTACGTGGGCTGACTTTGAGTTTGTATAATTAGTCATGTTTTTTAATAGGGCAACTTTCACATATGGCAAACAAAAAATTCATATTTGTATGCTATAGCAAAGTTTGCATAATTGCGCTCCATAGCAAACATAAAATTGTATAATTCGCTATACATATACAATTGTATAATTCGCTGGCCTATTTCGCTGCAATTGTATAATTTGCTTTGCATACAGTTGAACCGAATTAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCACTGTATACAAAAACAGAAACACAATATATACACTTCTGTTATATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCGTTGCCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACAAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAATTATACACTTCTGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGAGAGACGCTGGCAAATTTTAGCTAATGTTTGCTATGGAGCACAATTAAATCAAACCCTAGCTATTTCATTTAATTTAGGTTATTAGTTTGCTATTATATACAATTTTCCCTTTTTAATATATAACTCGCCAGAATATGCAATTACATATGCATAATATACAATTATTTAACATATATATATATATATATATATATATATATATATATATATATACAACTCACCTCTCTCCTACTCTATGCCCTCTCTCGCTCGCCTCTCTCCTCCCTCTCCCAATCTTGCTCGCGATATATACAAACGCATATATAATATACAATTATATACATATACAATTCATCTCTTTCTCCCTCTCTGCCCCCCTCCCCCTCCCCCTTTCGCTCGCTTCTCTCCTTCCTCTCCCAATCTGGCTCGCCTCTCTCCTTCCTCTCCCAGTCTCACTCGTCTCTTTCATCGCTCTCCCAATCTCACGTGCCATGAATGCATATGTATAACATACAATTATCTAACTGATATACATATACAATTTACCTTTCTCCCACTCTTTTCCCCCTCTCTCACCTCTCTCCTCTCTCTCTCAGTCTCGATCGCCTCTCTCCTCCATATAACATGTAGTTATGAATTGTAATTATCAAACTATAGCTATTGAGAATAATTAGACTATTTTTAAGTGGCTATATATGAAAGTTCCCAAGAAATACCAATATATTAGTCAAAAATTTGTTCACTCCCTAATAATTATTTAATCATCATCTTATAATTCTATATTATAAAAATATATAACTTGATCACGTGACTCTAAGGACTCTAGATTGTATATACGCCACGACTAGCTGGTTTTGGGTTCCCTAATGAATTCATGGTCTAAACTCTGAACTATATAATTCTAGCACTTAAGAGACAATTTAATACATATATAACAAATTTGAGAACAAATACATTTTCTAGTAATTTGTATTCAAAGTTTACTTAAATATTGAAAAATTAAATTATAAATTGTGAAATATATATATATATATATATTGAATTTTGTAAATTGCTACATCTTAACGTATTTAGGTGAAAATTAACTAATTCTGGGCCCAGGTGACGTTTCACTTCTAATCACAACTCATTTGTTGATTCTTCCATACAATAGATCACATAAATTCATGTCTATAAGTAGTGATAATTGTCTTATAAAGATTTGCTTTAGTTATGACTTTAATTAAGTCACTGCTTATGAATCACCAATTCATTTTTTTACGATCAATAACCTGGCTCCTCCCCAATCTAACAGACTTATTTTTATCATTTTTCAAATTTTTCTCACAAACCTTCAATAGTGTTCTTATCTTGAATTTTATACTCAATCTTTATTTAATGAGCTATTATTCATCATTACCATTGCATAAAAAAGTTTGTATAACATGATTTCTATATTGTGTTATAATGATAGAAGAAGATGAGCAACAAATATGTTTTTTTTTTGGTCTAAAGTTGGTCAACTATGAAATATTAAAAAATTTGAAAAAATTTCTTAAAACTGGCTACTAGTGCAATTAGTTTTAATCCTCAGTACTAAGAGGCCCATTGGACCAAAGACAGTTTCTAAGCCCATTTCGAAAAACCCTAGGGCATTAATTTCAGAAGTATAAAAGCCTCCTCTCCCAACTACTGTCCATTTCTCCTTCGTTCGCAGCTTCACAAAATCGAAAATGGTTTCGTTGAAGCTCCAGAAGCGGCTCGCCGCTAGTGTCCTCAAGTGTGGAAGAGGCAAAGTTTGGCTTGATCCTAATGAAGGCAATGAAATCTCCATGGCCAATTCCCGTATGTTTCTGTTTTCTGTTTGTTATCAATATCTATTTACGTTTATGCTATCTCTTTTAATCTCTTGTTTGTATGTTATGGCTTCTGATTGTGAAAGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>AGGATGTTACAAAAGTTTATATAAAAAATTGTACATTCCACAGTACAACAAATGGTGCAAGAATCAAGACTTATATGGATTCATCTCCACTACAAGTTTCTGATGTTGTTTATGAAGATATTGTTTTGGAGGATGTTAAAAATCCAATTCTTATTGATCAACACTATAATTCCAAGAACAAGGTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATCAAAAGTGAAACTAAAAGATATTCACTTCAAGAACATAAGGGGGACAACAAATTCAAAAGCTCCAGTATCACTTAATTGCAGTGAAGCAGCTCCATGTGAAGGAGTTGAATTGGCTGATATCAATATAGCTCCATCTGGTACAACTGGACCTCTACAAGGAGCAACATGTCAAAATGCCAAGACAGTATTCAATGGAAAAACTAATGTTCCAGCATGTAAATAATTACATTACATTATTAATCAAATCATGTCCATATG-AAGTATGTGTATAAATTTCAATATAACCATGTAATTTTGTTTATGGTTTATTATAATATTTATTTA-A--TTTTTTTTCGATGCCTGGAAATAG---AAAAA-AA-AAGATAAAATTTAGCGCTTGACGCATATTAGCTACGGATG.................................................................................................................................................................................................TAGCTAGTTAGGGTTAGTTTCTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAAATACATGCATGTGTTCTTGTGTATCCACATAATTTATTTATGGTTAATTACGATATTTTTCTTTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243215" ref_strand="+" ref_description="SGN-E243215 [cLEE-2-E2]">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="66581" stop="67636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66881" g_stop="67339" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E243215" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66881" e_stop="67339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTATAGATGACCAAATTTTTTCTTCGAATACGAAATTAAATTACAATACGCACAAAAAAATAGTTTAAATTTTTTTCCTTTAAACTAAGGAATGAAAGAAAAAAACATAATAAGAATAAGAAACCCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCTCTAAATA--ATTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTCCGTTAAATGAAGGGTATATGTGAGCCATGTTTGTGACGACAGGGGTATATGTGAGCCGTTTTTATAACGGTAAGGACATATATGAGTCACTTTTATAACGAAGGGTATATCAGCTCCAAATGACAAAATTGAGGGATATATCAGACCCTTTTCCCT-TTTTTTAATA-TTCAGGC</genome_strand>
        <mrna_strand>TTATTGTAGATGACC-AATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATATTTGAATTTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATG-AAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCAT-TTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCCCTATTTTTTAAAATTTCATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68438" stop="131044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68738" g_stop="69059" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68738" e_stop="69059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCACTGTATACAAAAACAGAAACACAATATATACACTTCTGTTATATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCGTTGCCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACAAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAA-TTATACACTTCTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68438" stop="69333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68738" g_stop="69028" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68738" e_stop="69028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCACTGTATACAAAAACAGAAACACAATATATACACTTCTGTTATATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCGTTGCCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACAAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGA</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 [cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68439" stop="69485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68739" g_stop="69185" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68739" e_stop="69185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCACTGTATACAAAAACAGAAACACAATATATACACTTCTGTTATATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCGTTGCCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACAAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAA-TTATACACTTCTGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGAGAGACG-CTGGCAAATTTTAGCTAATGTTTGCTATGGAGCACAATTAAATCAAACCCTAGCTATTTCATTTAATTTAGGTTATTAG</genome_strand>
        <mrna_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTT-AGTTAGATTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352676" ref_strand="+" ref_description="SGN-E352676 [cTOS-11-E10]">
      <seq>ttctattctcagcaatatcaattacaatggctcgttatttatccaactgcaaaaatatctctgcttttgttgtagactctgtttctgtagctatccagaggcgtggatacgcggccacggcagcacagggtggtgtttctggtagtgtaagaggtagtgggagtgttagaagcaatgtgatggaatcaaacaagacttcatgggtaccagatcctgttactggttattacagaccagaaactcatgctaaggaaattgatgctgctgaacttagaaacatgttgttgaagtacaaacctagacaaaattgaaaaaaaaaaaagaacaaattagaggatcaagaatcacgtttcgatgagtagagacgaattaggatttggatattgaagttcaatagtagaaatattgtaatttctcacatattatgtttgtttttcgcataaggaaaatgttgaattcagttgaatacgttggacatgtattacatattagattttcactttttgattaattctaaaaaaaaacaattagaagatcaagaattacattttgatgagtagatgaattcaggattngaatattgggagtcaatagtgaaaatattgtaatttttcacatattatgtttggtttctgcataagaaaatgtttgaatttcaactgatacgttgaacatgcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73621" stop="72012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73321" g_stop="73222" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73221" i_stop="72903" i_length="319">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72902" g_stop="72325" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="677" r_length="577" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="678" polyA_stop="692"/>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E352676" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73321" e_stop="73222"/>
          <exon e_start="72902" e_stop="72325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGAAAATGTTGAATTCAGTTGAATACGTTGGACATGTATTACATATTAGATTTTCACTTTTTGATTAATTCTAAAAAAAAACAATTAGAAGATCAAGAATTACATTTTGATGAGTAGATGAATTCAGGATTGAAATATTGGAGTTCAATAGTGAAAATATTGTAATTTTTCACATATTATGTTTGTTTTCTGCATAAGAAAAATGTTTGAA-TTCAACTGAATACGTTGAACATGC</genome_strand>
        <mrna_strand>TTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAG...............................................................................................................................................................................................................................................................................................................................GCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGAAAATGTTGAATTCAGTTGAATACGTTGGACATGTATTACATATTAGATTTTCACTTTTTGATTAATTCTAAAAAAAAACAATTAGAAGATCAAGAATTACATTTTGATGAGTAGATGAATTCAGGATTNGAATATTGGGAGTCAATAGTGAAAATATTGTAATTTTTCACATATTATGTTTGGTTTCTGCATAAG-AAAATGTTTGAATTTCAACTG-ATACGTTGAACATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309392" ref_strand="+" ref_description="SGN-E309392 [cLEY-22-D9]">
      <seq>ataatataggcgtggataccgcggccacggcagcacagggtggtgtttctggtagtgtaagaggtagtgggagtgttagaagcaatgtgatggaatcaaacaagacttcatgggtaccagatcctgttactggttattacagaccagaaactcatgctaaggaaattgatgctgctgaacttagaaacatgttgttgaagtacaaacctagacaaaattgaaaaaaaaaaaagaacaaattagaggatcaagaatcacgtttcgatgagtagagacgaattaggatttggatattgaagttcaatagtagaaatattgtaatttctcacatattatgtttgtttttcgcataaggaaaatgttgaattcagttgaatacgttggacatgtattacatattagattttcactttttgattaattctaaaaaaaaacaattagaagatcaagaattacattttgatgagtagatgaattcaggattgaaatattggagttcaatagtgaaaatattgtaatttttcacatattatgcttgttttctgcataagaaaaatgtttgaattcaactgaatacgttgaacatgccttnnnnaaaaaaaaaaanaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73211" stop="72022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72911" g_stop="72325" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="596" polyA_stop="618"/>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E309392" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72911" e_stop="72325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATATAGGCGTGGATA-CGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGAAAATGTTGAATTCAGTTGAATACGTTGGACATGTATTACATATTAGATTTTCACTTTTTGATTAATTCTAAAAAAAAACAATTAGAAGATCAAGAATTACATTTTGATGAGTAGATGAATTCAGGATTGAAATATTGGAGTTCAATAGTGAAAATATTGTAATTTTTCACATATTATGTTTGTTTTCTGCATAAGAAAAATGTTTGAATTCAACTGAATACGTTGAACATGC</genome_strand>
        <mrna_strand>ATAATATAGGCGTGGATACCGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGAAAATGTTGAATTCAGTTGAATACGTTGGACATGTATTACATATTAGATTTTCACTTTTTGATTAATTCTAAAAAAAAACAATTAGAAGATCAAGAATTACATTTTGATGAGTAGATGAATTCAGGATTGAAATATTGGAGTTCAATAGTGAAAATATTGTAATTTTTCACATATTATGCTTGTTTTCTGCATAAGAAAAATGTTTGAATTCAACTGAATACGTTGAACATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262864" ref_strand="+" ref_description="SGN-E262864 [cLEG-59-G12]">
      <seq>tacaatggctcgttatttatccaactgcaaaaatatctctgcttttgttgtagactctgtttctgtagctatccagaggcgtggatacgcggccacggcagcacagggtggtgtttctggtagtgtaagaggtagtgggagtgttagaagcaatgtgatggaatcaaacaagacttcatgggtaccagatcctgttactggttattacagaccagaaactcatgctaaggaaattgatgctgctgaacttagaaacatgttgttgaagtacaaacctagacaaaattgaaaaaaaaaaaagaacaaattagaggatcaagaatcacgtttcgatgagtagagacgaattaggatttggatattgaagttcaatagtagaaatattgtaatttctcacatattatgtttgtttttcgcataaggaaaatgttgaattcagttgaatacgttggacatgtattacatattagattttcactttttgattaattctaaaaaaaaacaattagaagatcaagaattacattttgatgagtagatgaattcaggattgaaatattggagttcaatagtgaaaatattgtaatttttcacatattatgtttgttttctgcataaaaaaaaaaaaaaaaaaaaaaaaaccgagaacagacaatggcttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73599" stop="72057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73299" g_stop="73222" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73221" i_stop="72903" i_length="319">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72902" g_stop="72358" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="623" r_length="545" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="624" polyA_stop="642"/>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E262864" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73299" e_stop="73222"/>
          <exon e_start="72902" e_stop="72358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGAAAATGTTGAATTCAGTTGAATACGTTGGACATGTATTACATATTAGATTTTCACTTTTTGATTAATTCTAAAAAAAAACAATTAGAAGATCAAGAATTACATTTTGATGAGTAGATGAATTCAGGATTGAAATATTGGAGTTCAATAGTGAAAATATTGTAATTTTTCACATATTATGTTTGTTTTCTGCATAAGAAAA</genome_strand>
        <mrna_strand>TACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAG...............................................................................................................................................................................................................................................................................................................................GCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGAAAATGTTGAATTCAGTTGAATACGTTGGACATGTATTACATATTAGATTTTCACTTTTTGATTAATTCTAAAAAAAAACAATTAGAAGATCAAGAATTACATTTTGATGAGTAGATGAATTCAGGATTGAAATATTGGAGTTCAATAGTGAAAATATTGTAATTTTTCACATATTATGTTTGTTTTCTGCATAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549641" ref_strand="+" ref_description="SGN-E549641 [TUS-6-D6](-)">
      <seq>cttagaaacatgttgttgaagttcaaacctaggcaaaattgaaaaaaaaaaaagaacaaattagaggatcaagaatcacgtttcgatgagtagagacgaattaggatttggatattgaagttcaatagtagaaatattgtaatttctcacatattatgtttgtttttcgcataaggaaaatgttgaattcagttgaatacgttggacatgtattacatattagattttcactttttgattaattctaaaaaaggacaattagaagatcaagaattacattttgatgagtagatgaattcaggattgaaatggaggagttcaatagtgttcatattgtaagattcacatattatgttgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73033" stop="72124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72733" g_stop="72372" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E549641" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72733" e_stop="72372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGAAAATGTTGAATTCAGTTGAATACGTTGGACATGTATTACATATTAGATTTTCACTTTTTGATTAATTCTAAAAAAAAACAATTAGAAGATCAAGAATTACATTTTGATGAGTAGATGAATTCAGGATTGAAATATTGGAGTTCAATAGTGAAAATATTGTAATTTTTCACATATTATGTTTGTTT</genome_strand>
        <mrna_strand>CTTAGAAACATGTTGTTGAAGTTCAAACCTAGGCAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGAAAATGTTGAATTCAGTTGAATACGTTGGACATGTATTACATATTAGATTTTCACTTTTTGATTAATTCTAAAAAAGGACAATTAGAAGATCAAGAATTACATTTTGATGAGTAGATGAATTCAGGATTGAAATGGAGGAGTTCAATAGTGTTCATATTGTAA-GATTCACATATTATG-TTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368722" ref_strand="+" ref_description="SGN-E368722 [TUS-22-H6](-)">
      <seq>ttaaaaaaaatttcaaatttgttgctgcggaagtaataaaaatttcgatttcttccgctgcaacttcaattcaattttgattgattgatcttcttctattctcagcaatatcaattacaatggctcgttatttatccaactgcaaaaatatctctgcttttgttgtagactctgtttctgtagctatccagaggcgtggatacgcggccacggcagcacagggtggtgtttctggtagtgtaagaggtagtgggagtgttagaagcaatgtgatggaatcaaacaagacttcatgggtaccagatcctgttactggttattacagaccagaaactcatgctaaggaaattgatgctgctgaacttagaaacatgttgttgaagtacaaacctagacaaaattgaaaaaaaaaaaagaacaaattagaggatcaagaatcacgtttcgatgagtagagacgaattaggatttggatattgaagttcaatagtagaaatattgtaatttctcacatattatgtttgtttttcgcataaggaaaatgttgaattcagttgaatacgttggacatgtattacatattagattttcactttttgattaattctaaaaaaaaacaattagaagatcaagaattacattttgatgagtagatgaattcaggattgaaatattggagttcaatagtgaaaatattgtaatttttcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73714" stop="72084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73414" g_stop="73222" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73221" i_stop="72903" i_length="319">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72902" g_stop="72377" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="719" r_length="526" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E368722" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73414" e_stop="73222"/>
          <exon e_start="72902" e_stop="72377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAAAAAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGAAAATGTTGAATTCAGTTGAATACGTTGGACATGTATTACATATTAGATTTTCACTTTTTGATTAATTCTAAAAAAAAACAATTAGAAGATCAAGAATTACATTTTGATGAGTAGATGAATTCAGGATTGAAATATTGGAGTTCAATAGTGAAAATATTGTAATTTTTCACATATTATGTT</genome_strand>
        <mrna_strand>TTAAAAAAAATTTCAAATTTGTTGCTGCGGAAGTAATAAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAG...............................................................................................................................................................................................................................................................................................................................GCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGAAAATGTTGAATTCAGTTGAATACGTTGGACATGTATTACATATTAGATTTTCACTTTTTGATTAATTCTAAAAAAAAACAATTAGAAGATCAAGAATTACATTTTGATGAGTAGATGAATTCAGGATTGAAATATTGGAGTTCAATAGTGAAAATATTGTAATTTTTCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E398479" ref_strand="+" ref_description="SGN-E398479 [TUS-16-J4](-)">
      <seq>aaggaaattgatgctgatgaaaaaagaaacatgttgttgaagtacaaacctagacaaaattgaaaaaaaaaaaagaacaaattagaggatcaagaatcacgtttcgatgagtagagacgaattaggatttggatattgaagttcaatagtagaaatattgtaatttctcacatattatgtttgtttttcgcataaggaaaatgttgaattcagttgaatacgttggacatgtattacatattagattttcactttttgattaattctaaaaaaaaacaattagaagatcaagaattacattttgatgagtagatgaatgcaggattgaaatattggagttcaatagtgaaaatattgtaattttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73054" stop="72084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72754" g_stop="72380" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E398479" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72754" e_stop="72380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGAAAATGTTGAATTCAGTTGAATACGTTGGACATGTATTACATATTAGATTTTCACTTTTTGATTAATTCTAAAAAAAAACAATTAGAAGATCAAGAATTACATTTTGATGAGTAGATGAATTCAGGATTGAAATATTGGAGTTCAATAGTGAAAATATTGTAATTTTTCACATATTAT</genome_strand>
        <mrna_strand>AAGGAAATTGATGCTGATGAAAAAAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGAAAATGTTGAATTCAGTTGAATACGTTGGACATGTATTACATATTAGATTTTCACTTTTTGATTAATTCTAAAAAAAAACAATTAGAAGATCAAGAATTACATTTTGATGAGTAGATGAATGCAGGATTGAAATATTGGAGTTCAATAGTGAAAATATTGTAATTTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396459" ref_strand="+" ref_description="SGN-E396459 [TUS-48-F13](-)">
      <seq>tttgggataaattatatcattgtcggtagtgtttacgttattttatttaaattttgaaattgtttttaataatatagggggggattcgcgggcccggcagcacagggtggtgtttttggtagtgtaagaggtagtgggagtgtttgaagcaatgtgatggaatcaaacaagaatttatgggtacccgatcctgtttctggttttttcaggcccgaaaatcatggtaaggaaaatgatggtggtgaaattagaaacaagttgttgaagtaccaaccttggcaaaattgaaaaaaaaaaaagaacaaatttgaggatcaagaatcccgttttgatgagtagagacgaatttggatttggatattgaagttcaatagtagaaatattgtaatttttcacatattatgtttgttttttgcataaggaaaatgttgaattcagttgaatacgttggacaagtattacatattagattttcactttttgattaattttaaaaaaaaacaattagaagatcaagaattacattttgatgagtagatgaattcaggattgaaatattggagttcaatagtggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73279" stop="72101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72979" g_stop="72399" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="581" r_length="581" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="582" polyA_stop="605"/>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E396459" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72979" e_stop="72399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGAAAATGTTGAATTCAGTTGAATACGTTGGACATGTATTACATATTAGATTTTCACTTTTTGATTAATTCTAAAAAAAAACAATTAGAAGATCAAGAATTACATTTTGATGAGTAGATGAATTCAGGATTGAAATATTGGAGTTCAATAGTGAAAATATT</genome_strand>
        <mrna_strand>TTTGGGATAAATTATATCATTGTCGGTAGTGTTTACGTTATTTTATTTAAATTTTGAAATTGTTTTTAATAATATAGGGGGGGATTCGCGGGCCCGGCAGCACAGGGTGGTGTTTTTGGTAGTGTAAGAGGTAGTGGGAGTGTTTGAAGCAATGTGATGGAATCAAACAAGAATTTATGGGTACCCGATCCTGTTTCTGGTTTTTTCAGGCCCGAAAATCATGGTAAGGAAAATGATGGTGGTGAAATTAGAAACAAGTTGTTGAAGTACCAACCTTGGCAAAATTGAAAAAAAAAAAAGAACAAATTTGAGGATCAAGAATCCCGTTTTGATGAGTAGAGACGAATTTGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTTTCACATATTATGTTTGTTTTTTGCATAAGGAAAATGTTGAATTCAGTTGAATACGTTGGACAAGTATTACATATTAGATTTTCACTTTTTGATTAATTTTAAAAAAAAACAATTAGAAGATCAAGAATTACATTTTGATGAGTAGATGAATTCAGGATTGAAATATTGGAGTTCAATAGTGGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549638" ref_strand="+" ref_description="SGN-E549638 [TUS-6-C6](-)">
      <seq>aattgaaaaaaaaaaaagaacaaattagaggatcaagaatcacgtttcgatgagtagagacgaattaggatttggatattgaagttcaatagtagaaatattgtaatttctcacatattatgtttgtttttcgcataaggaaaatgttgaattcagttgaatacgttggacatgtattacatattagattttcactttttgattaattctaaaaaaaaacaattagaagatcaagaattacattttgatgagtagatgaattcaggattgaaagaaagagttcaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="72997" stop="72110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72697" g_stop="72410" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E549638" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>288</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72697" e_stop="72410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGAAAATGTTGAATTCAGTTGAATACGTTGGACATGTATTACATATTAGATTTTCACTTTTTGATTAATTCTAAAAAAAAACAATTAGAAGATCAAGAATTACATTTTGATGAGTAGATGAATTCAGGATTGAAATATTGGAGTTCAATA</genome_strand>
        <mrna_strand>AATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGAAAATGTTGAATTCAGTTGAATACGTTGGACATGTATTACATATTAGATTTTCACTTTTTGATTAATTCTAAAAAAAAACAATTAGAAGATCAAGAATTACATTTTGATGAGTAGATGAATTCAGGATTGAAAGA-AAGAGTTCAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254874" ref_strand="+" ref_description="SGN-E254874 [cLEG-33-J6]">
      <seq>tacaatggctcgttatttatccaactgcaaaaatatctctgcttttgttgtagactctgtttctgtagctatccagaggcgtggatacgcggccacggcagcacagggtggtgtttctggtagtgtaagaggtagtgggagtgttagaagcaatgtgatggaatcaaacaagacttcatgggtaccagatcctgttactggttattacagaccagaaactcatgctaaggaaattgatgctgctgaacttagaaacatgttgttgaagtacaaacctagacaaaattgaaaaaaaaaaaagaacaaattagaggatcaagaatcacgtttcgatgagtagagacgaattaggatttggatattgaagttcaatagtagaaattatttggaatttctcacatattatgtttgtttttcgcataaggaaaatgttgaattcagttgaatacgttggacatgtattacatattagattttcactttttgattaattctaaaaaaaaacaattagaagatcaagaattacattttgatgagtagatgaattcaggattgaaatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73599" stop="72121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73299" g_stop="73222" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73221" i_stop="72903" i_length="319">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72902" g_stop="72421" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="562" r_length="484" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E254874" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73299" e_stop="73222"/>
          <exon e_start="72902" e_stop="72421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAA-TA-TTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGAAAATGTTGAATTCAGTTGAATACGTTGGACATGTATTACATATTAGATTTTCACTTTTTGATTAATTCTAAAAAAAAACAATTAGAAGATCAAGAATTACATTTTGATGAGTAGATGAATTCAGGATTGAAATATT</genome_strand>
        <mrna_strand>TACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAG...............................................................................................................................................................................................................................................................................................................................GCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATTATTTGGAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGAAAATGTTGAATTCAGTTGAATACGTTGGACATGTATTACATATTAGATTTTCACTTTTTGATTAATTCTAAAAAAAAACAATTAGAAGATCAAGAATTACATTTTGATGAGTAGATGAATTCAGGATTGAAATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550377" ref_strand="+" ref_description="SGN-E550377 [TUS-5-N8](-)">
      <seq>cttagaaacatgttgttgaagttcaaacctaggcaaaattggaaaaaaaaaaagaacaaattagaggatcaagaatcacgtttcgatgagtagagacgaattaggatttggatattgaagttcaatagtagaaatattgtaatttctcacatattatgtttgtttttcgcataaggaaaatgttgaattcagttgaatacgttggacatgtgttacatattagattttcactttttgattaattctaaaaaaaaacaattagaagatcaggaattacattttgatgagtagatgaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73033" stop="72136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72733" g_stop="72436" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E550377" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72733" e_stop="72436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGAAAATGTTGAATTCAGTTGAATACGTTGGACATGTATTACATATTAGATTTTCACTTTTTGATTAATTCTAAAAAAAAACAATTAGAAGATCAAGAATTACATTTTGATGAGTAGATGAATT</genome_strand>
        <mrna_strand>CTTAGAAACATGTTGTTGAAGTTCAAACCTAGGCAAAATTGGAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGAAAATGTTGAATTCAGTTGAATACGTTGGACATGTGTTACATATTAGATTTTCACTTTTTGATTAATTCTAAAAAAAAACAATTAGAAGATCAGGAATTACATTTTGATGAGTAGATGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228412" ref_strand="+" ref_description="SGN-E228412 [cLED-3-L24]">
      <seq>tatccagaggcgtggatacgcggccacggcagcacagggtggtgtttctggtagtgtaagaggtagtgggagtgttagaagcaatgtgatggaatcaaacaagacttcatgggtaccagatcctgttactggttattacagaccagaaactcatgctaaggaaattgatgctgctgaacttagaaacatgttgttgaagtacaaacctagacaaaattgaaaaaaaaaaaagaacaaattagaggatcaagaatcacgtttcgatgagtagagacgaattaggatttggatattgaagttcaatagtagaaatattgtaatttctcacatattatgtttgtttttcgcataaggaaaatgttgaattcagttgaatacgttggacatgtattacatattagattttcactttttgattaattctaaaaaaaaacaattagaagatcaagaattacattttgatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73206" stop="72146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72902" g_stop="72446" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="466" r_length="457" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E228412" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72902" e_stop="72446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGAAAATGTTGAATTCAGTTGAATACGTTGGACATGTATTACATATTAGATTTTCACTTTTTGATTAATTCTAAAAAAAAACAATTAGAAGATCAAGAATTACATTTTGATGAG</genome_strand>
        <mrna_strand>GCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGAAAATGTTGAATTCAGTTGAATACGTTGGACATGTATTACATATTAGATTTTCACTTTTTGATTAATTCTAAAAAAAAACAATTAGAAGATCAAGAATTACATTTTGATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E389678" ref_strand="+" ref_description="SGN-E389678 [TUS-4-N8](-)">
      <seq>cttagaaacatgttgttgaagttcaaacctagacaaaattgaaaaaaaaaaaagaacaaattagaggatcaagaatcacgtttcgatgagtagagacgaattaggatttggatattgaagttcaatagtagaaatattgtaatttctcacatattatgtttgtttttcgcataaggaaaatgttgaattcagtttaatacgttggacatggataaataatagattttcactttttgattaattctaaaaaaaaacaattagaagatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73033" stop="72165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72733" g_stop="72465" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E389678" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>269</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72733" e_stop="72465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGAAAATGTTGAATTCAGTTGAATACGTTGGACATGTATTACATATTAGATTTTCACTTTTTGATTAATTCTAAAAAAAAACAATTAGAAGATCA</genome_strand>
        <mrna_strand>CTTAGAAACATGTTGTTGAAGTTCAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGAAAATGTTGAATTCAGTTTAATACGTTGGACATGGA-TAAATAATAGATTTTCACTTTTTGATTAATTCTAAAAAAAAACAATTAGAAGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368723" ref_strand="+" ref_description="SGN-E368723 [TUS-22-H6]">
      <seq>ttccttcagattttaaaaaaaatttcaaatttgttgctgcggaagtaattaaaatttcgatttcttccgctgcaacttcaattcaattttgattgattgatcttcttctattctcagcaatatcaattacaatggctcgttatttatccaactgcaaaaatatctctgcttttgttgtagactctgtttctgtagctatccagaggcgtggatacgcggccacggcagcacagggtggtgtttctggtagtgtaagaggtagtgggagtgttagaagcaatgtgatggaatcaaacaagacttcatgggtaccagatcctgttactggttattacagaccagaaactcatgctaaggaaattgatgctgctgaacttagaaacatgttgttgaagtacaaacctagacaaaattgaaaaaaaaaaaagaacaaattagaggatcaagaatcacgtttcgatgagtagagacgaattaggatttggatattgaagttcaatagtagaaatattgtaatttctcacatattatgtttgtttttcgcataaggaaaatgttgaattcagttgaatacgttggacatgtattaccatattagatttttacttttttgattaattctaaaaaaaaacaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73726" stop="72174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73426" g_stop="73222" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73221" i_stop="72903" i_length="319">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72902" g_stop="72474" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="636" r_length="431" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E368723" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73426" e_stop="73222"/>
          <exon e_start="72902" e_stop="72474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTCAGATTTTAAAAAAAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGAAAATGTTGAATTCAGTTGAATACGTTGGACATGTATTA-CATATTAGATTTTCAC-TTTTTGATTAATTCTAAAAAAAAACAATT</genome_strand>
        <mrna_strand>TTCCTTCAGATTTTAAAAAAAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAG...............................................................................................................................................................................................................................................................................................................................GCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGAAAATGTTGAATTCAGTTGAATACGTTGGACATGTATTACCATATTAGATTTTTACTTTTTTGATTAATTCTAAAAAAAAACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712186" ref_strand="+" ref_description="SGN-E712186 [FB04AF03]">
      <seq>agattttaaaaaaaatttcaaatttgttgctgcggaagtaattaaaatttcgatttcttccgctgcaacttcaattcaattttgattgattgatcttcttctattctcagcaatatcaattacaatggctcgttatttatccaactgcaaaaatatctctgcttttgttgtagactctgtttctgtagctatccagaggcgtggatacgcggccacggcagcacagggtggtgtttctggtagtgtaagaggtagtgggagtgttagaagcaatgtgatggaatcaaacaagacttcatgggtaccagatcctgttactggttattacagaccagaaactcatgctaaggaaattgatgctgctgaacttagaaacatgttgttgaagtacaaacctagacaaaattgaaaaaaaaaaaaaaacaaattaaaggatcaaaaatcacgtttcgatgagtaaaaacaaattaggatttggatattgaagttcaatagtaaaaatattgaaatttctcacatattatgtttgtttttcccataaggaaaatgttgaattcagttgaatacgttggacatgtattacatattaaattttcactttttgattaattctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaannccccgggggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73719" stop="72156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73419" g_stop="73222" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73221" i_stop="72903" i_length="319">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72902" g_stop="72477" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="624" r_length="426" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="633" polyA_stop="666"/>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E712186" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73419" e_stop="73222"/>
          <exon e_start="72902" e_stop="72477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTTAAAAAAAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGAAAATGTTGAATTCAGTTGAATACGTTGGACATGTATTACATATTAGATTTTCACTTTTTGATTAATTCTAAAAAAAAACA</genome_strand>
        <mrna_strand>AGATTTTAAAAAAAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAG...............................................................................................................................................................................................................................................................................................................................GCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAAAACAAATTAAAGGATCAAAAATCACGTTTCGATGAGTAAAAACAAATTAGGATTTGGATATTGAAGTTCAATAGTAAAAATATTGAAATTTCTCACATATTATGTTTGTTTTTCCCATAAGGAAAATGTTGAATTCAGTTGAATACGTTGGACATGTATTACATATTAAATTTTCACTTTTTGATTAATTCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391126" ref_strand="+" ref_description="SGN-E391126 [TUS-47-B4]">
      <seq>aaatttcaaatttgcttttgcggaagtaattaaaatttcgatttcttccgctgcaacttcaattcaattttgattgattgatcttcttctattctcagcaatatcaattacaatggctcgttatttatccaactgcaaaaatatctctgcttttgttgtagactctgtttctgtagctatccagaggcgtggatacgcggccacggcagcacagggtggtgtttctggtagtgtaagaggtagtgggagtgttagaagcaatgtgatggaatcaaacaagacttcatgggtaccagatcctgttactggttattacagaccagaaactcatgctaaggaaattgatgctgctgaacttagaaacatgttgttgaagtacaaacctagacaaaattgaaaaaaaaaaaagaacaaattagaggatcaagaatcacgtttcgatgagtagagacgaattaggatttggatattgaagttcaatagtagaaatattgtaatttctcacatattatgtttgtttttcgcataaggaaaatgttgaattcagttgaatacgttggacatgtattacatattagattttcactttttgattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73707" stop="72192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73407" g_stop="73222" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73221" i_stop="72903" i_length="319">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72902" g_stop="72484" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="605" r_length="419" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E391126" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73407" e_stop="73222"/>
          <exon e_start="72902" e_stop="72484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGAAAATGTTGAATTCAGTTGAATACGTTGGACATGTATTACATATTAGATTTTCACTTTTTGATTAATTCTAAAA</genome_strand>
        <mrna_strand>AAATTTCAAATTTGCTTTTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAG...............................................................................................................................................................................................................................................................................................................................GCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGAAAATGTTGAATTCAGTTGAATACGTTGGACATGTATTACATATTAGATTTTCACTTTTTGATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290446" ref_strand="+" ref_description="SGN-E290446 [cLES-20-F2]">
      <seq>aatttcaaatttgttgctgcggaagtaattaaaatttcgatttcttccgctgcaacttcaattcaattttgattgattgatcttcttctattctcagcaatatcaattacaatggctcgttatttatccaactgcaaaaatatctctgcttttgttgtagactctgtttctgtagctatccagaggcgtggatacgcggccacggcagcacaaggtggtgtttctggtagtgtaagaggtagtgggagtgttagaagcaatgtgatggaatcaaacaagacttcatgggtaccagatcctgttactggttattacagaccagaaactcatgctaaggaaattgatgctgctgaacttagaaacatgttgttgaagtacaaacctagacaaaattgaaaaaaaaaaaagaacaaattagaggatcaagaatcacgtttcgatgagtcgagacgaattaggatttggatattgaagttcaatagtagaaatattgtaatttctcacatattatgtttgttcttcgcataaggaaaatgttgaattcagttgaatacgttggacatgtattacatattagattttcactttttgattaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73706" stop="72192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73406" g_stop="73222" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73221" i_stop="72903" i_length="319">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72902" g_stop="72485" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="603" r_length="418" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E290446" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73406" e_stop="73222"/>
          <exon e_start="72902" e_stop="72485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGAAAATGTTGAATTCAGTTGAATACGTTGGACATGTATTACATATTAGATTTTCACTTTTTGATTAATTCTAAA</genome_strand>
        <mrna_strand>AATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAG...............................................................................................................................................................................................................................................................................................................................GCGTGGATACGCGGCCACGGCAGCACAAGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTCGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTCTTCGCATAAGGAAAATGTTGAATTCAGTTGAATACGTTGGACATGTATTACATATTAGATTTTCACTTTTTGATTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391320" ref_strand="+" ref_description="SGN-E391320 [TUS-47-B4](-)">
      <seq>aaatttcaaatttgttgctgcggaagtaattaaaatttcgatttcttccgctgcaacttcaattcaattttgattgattgatctttttctattctcagcaatatcaattacaatggctcgttatttatccaactgcaaaaatatctctgcttttgttgtagactctgtttctgtagctatccagaggcgtggatacgcggccacggcagcacagggtggtgtttttggtagtgtaagaggtagtgggagtgttagaagcaatgtgatggaatcaaacaagacttcatgggtaccagatcctgttactggttattacagaccagaaactcatgctaaggaaattgatgctgctgaacttagaaacatgttgttgaagtacaaacctagacaaaattgaaaaaaaaaaaagaacaaattagaggatcaagaatcacgtttcgatgagtagagacgaattaggatttggatattgaagttcaatagtagaaatattgtaatttctcacatattatgtttgtttttcgcataaggaaaatgttgaaatgagttgaatacgttggacatgtattacatattagattaaaaggttttgataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73707" stop="72208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73407" g_stop="73222" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73221" i_stop="72903" i_length="319">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72902" g_stop="72486" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="603" r_length="417" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E391320" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73407" e_stop="73222"/>
          <exon e_start="72902" e_stop="72486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGAAAATGTTGAATTCAGTTGAATACGTTGGACATGTATTACATATTAGATTTTCACTTTTTGATTAATTCTAA</genome_strand>
        <mrna_strand>AAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTTTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAG...............................................................................................................................................................................................................................................................................................................................GCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTTTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGAAAATGTTGAAATGAGTTGAATACGTTGGACATGTATTACATATTAGATTAAAAGGTTTTGATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550226" ref_strand="+" ref_description="SGN-E550226 [TUS-5-N15](-)">
      <seq>tttaatttaaaataaaatttatattttaaagttaaattgttagcgggtaaagaaattaaaaaccgagttgtatgattggtggttctgtttttcctttttcttttcaaaataaggtaattttaccctttattatatacttttgggataaattatatcattgtcggtagtgtttacgttattttatttaaattttgaaattgtctttaataatataggcgtggatacgcggccccggcagcacagggtggtgtttttggtagtgtaagaggtagtgggagtgttagaagcaatgtgatggaatcaaacaagacttcatgggtaccagatcctgtttctggttattacagacccgaaactcatggtaaggaaaatgatgctgctgaacttagaaacatgttgttgaagttcaaacctaggcaaaattgaaaaaaaaaaaagaacaaattagaggatcaagaatcacgtttcgatgagtagagacgaattaggatttggatattgaagttcaatagtagaaatattgtaatttctcacatattatgtttgtttttcgcataaggaaaatgttgaattcagttgaatacgttggacatgtattacatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73417" stop="72214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73117" g_stop="72514" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="604" r_length="604" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E550226" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73117" e_stop="72514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGAAAATGTTGAATTCAGTTGAATACGTTGGACATGTATTACATAT</genome_strand>
        <mrna_strand>TTTAATTTAAAATAAAATTTATATTTTAAAGTTAAATTGTTAGCGGGTAAAGAAATTAAAAACCGAGTTGTATGATTGGTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATAAGGTAATTTTACCCTTTATTATATACTTTTGGGATAAATTATATCATTGTCGGTAGTGTTTACGTTATTTTATTTAAATTTTGAAATTGTCTTTAATAATATAGGCGTGGATACGCGGCCCCGGCAGCACAGGGTGGTGTTTTTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTTCTGGTTATTACAGACCCGAAACTCATGGTAAGGAAAATGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTTCAAACCTAGGCAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGAAAATGTTGAATTCAGTTGAATACGTTGGACATGTATTACATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716609" ref_strand="+" ref_description="SGN-E716609 [FB17CC01]">
      <seq>attttaaaaaaaatttcaaatttgttgctgcggaagtaattaaaatttcgatttcttccgctgcaacttcaattcaattttgattgattgatcttcttctattctcagcaatatcaattacaatggctcgttatttatccaactgcaaaaatatctctgcttttgttgtagactctgtttctgtagctatccagaggcgtggatacgcggccacggcagcacagggtggtgtttctggtagtgtaagaggtagtgggagtgttagaagcatgtgatggaatcaaacaagacttcatgggtaccagatcctgttactggttattacagaccagaaactcatgctaaggaaattgatgctgctgaacttagaaacatgttgttgaagtacaaacctagacaaaattgaaaaaaaaaaaaaaacaatttaaaggatcaaaaatcacgtttcaatgagtaaaaacaaattaggatttggatattgaagttcaatagtaaaaatattgaaatttcccacatataatgtttgtttttcccataaggaaaatgttgaattcagttgaatacgttggaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73717" stop="72226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73417" g_stop="73222" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73221" i_stop="72903" i_length="319">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72902" g_stop="72525" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="573" r_length="377" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="574" polyA_stop="587"/>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E716609" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73417" e_stop="73222"/>
          <exon e_start="72902" e_stop="72525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTAAAAAAAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGAAAATGTTGAATTCAGTTGAATACGTTGGACAT</genome_strand>
        <mrna_strand>ATTTTAAAAAAAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAG...............................................................................................................................................................................................................................................................................................................................GCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGC-ATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAAAACAATTTAAAGGATCAAAAATCACGTTTCAATGAGTAAAAACAAATTAGGATTTGGATATTGAAGTTCAATAGTAAAAATATTGAAATTTCCCACATATAATGTTTGTTTTTCCCATAAGGAAAATGTTGAATTCAGTTGAATACGTTGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290617" ref_strand="+" ref_description="SGN-E290617 [cLES-20-F14]">
      <seq>aatttcaaatttgttgctgcggaagtaattaaaatttcgatttcttccgctgcaacttcaattcaattttgattgattgatcttcttctattctcagcaatatcaattacaatggctcgttatttatccaactgcaaaaatatctctgcttttgttgtagactctgtttctgtagctatccagaggcgtggatacgcggccacggcagcacagggtggtgtttctggtagtgtaagaggtagtgggagtgttagaagcaatgtgatggaatcaaacaagacttcatgggtaccagatcctgttactggttattacagaccagaaactcatgctaaggaaattgatgctgctgaacttagaaacatgttgttgaagtacaaacctagacaaaattgaaaaaaaaaaaagaacaaattagaggatcaagaatcacgtttcgatgagtagagacgaattaggatttggatattgaagttcaatagtagaaatattgtaatttctcacatattatgtttgtttttcgcataaggaaaatgttgaattcagttgaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73706" stop="72235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73406" g_stop="73222" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73221" i_stop="72903" i_length="319">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72902" g_stop="72526" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="562" r_length="377" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E290617" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73406" e_stop="73222"/>
          <exon e_start="72902" e_stop="72526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGAAAATGTTGAATTCAGTTGAATACGTTGGACA</genome_strand>
        <mrna_strand>AATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAG...............................................................................................................................................................................................................................................................................................................................GCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGAAAATGTTGAATTCAGTTGAATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280600" ref_strand="+" ref_description="SGN-E280600 [cLER-1-H7]">
      <seq>caactgcaaaaatatctctgcttttgttgtagactctgtttctgtagctatccagaggcgtggatacgcggccacggcagcacagggtggtgtttctggtagtgtaagaggtagtgggagtgttagaagcaatgtgatggaatcaaacaagacttcatgggtaccagatcctgttactggttattacagaccagaaactcatgctaaggaaattgatgctgctgaacttagaaacatgttgttgaagtacaaacctagacaaaattgaaaaaaaaaaaagaacaaattagaggatcaagaatcacgtttcgatgagtagagacgaattaggatttggatattgaagttcaatagtagaaatattgtaatttctcacatattatgttttgttttcgcataaggaaaattgtgtattcagttgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73578" stop="72235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73278" g_stop="73222" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73221" i_stop="72903" i_length="319">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72902" g_stop="72530" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="430" r_length="373" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E280600" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73278" e_stop="73222"/>
          <exon e_start="72902" e_stop="72530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGAAAATGTTGAATTCAGTTGAATACGTTG</genome_strand>
        <mrna_strand>CAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAG...............................................................................................................................................................................................................................................................................................................................GCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTTGTTTTCGCATAAGGAAAATTGTGTATTCAGTTGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371506" ref_strand="+" ref_description="SGN-E371506 [TUS-29-H16](-)">
      <seq>atccaactgcaaaaatatctctgcttttgttgtagactctgtttctgtagctatccagaggcgtggatacgcggccacggcagcacagggtggtgtttttggtagtgtaagaggtagtgggagtgttagaagcaatgtgatggaatcaaacaagacttcatgggtaccagatcctgttactggttattacagaccagaaactcatgctaaggaaattgatgctgctgaacttagaaacatgttgttgaagtacaaacctagacaaaattgaaaaaaaaaaaagaacaaattagaggatcaagaatcacgtttcgatgagtagagacgaattaggatttggatattgaagttcaatagtagaaatattgtaatttctcacatattatgtttgtttttcgcataaggaaaatgttgaattcagttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73581" stop="72235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73281" g_stop="73222" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73221" i_stop="72903" i_length="319">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72902" g_stop="72531" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="432" r_length="372" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E371506" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73281" e_stop="73222"/>
          <exon e_start="72902" e_stop="72531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGAAAATGTTGAATTCAGTTGAATACGTT</genome_strand>
        <mrna_strand>ATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAG...............................................................................................................................................................................................................................................................................................................................GCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTTTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGAAAATGTTGAATTCAGTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716487" ref_strand="+" ref_description="SGN-E716487 [FB17AG05]">
      <seq>attttaaaaaaaatttcaaatttgttgctgcggaagtaattaaaatttcgatttcttccgctgcaacttcaattcaattttgattgattgatcttcttctattctcagcaatatcaattacaatggctcgttatttatccaactgcaaaaatatctctgcttttgttgtagactctgtttctgtagctatccagaggcgtggatacgcggccacggcagcacagggtggtgtttctggtagtgtaagaggtagtgggagtgttagaagcaatgtgatggaatcaaacaagacttcatgggtaccagatcctgttactggttattacagaccagaaactcatgctaaggaaattgatgctgctgaacttagaaacatgttgttgaagtacaaacctagacaaaattgaaaaaaaaaaaaaaacaatttagaggatcaaaaatcacgtttcgatgagtaaaaacaaattaggatttggatattgaagttcaatagtaaaaatattgaaatttcccacatattatgtttgtttttcgcataaggaaaatgttgaattcagttgaataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73717" stop="72235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73417" g_stop="73222" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73221" i_stop="72903" i_length="319">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72902" g_stop="72534" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="565" r_length="369" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="566" polyA_stop="577"/>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E716487" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73417" e_stop="73222"/>
          <exon e_start="72902" e_stop="72534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTAAAAAAAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGAAAATGTTGAATTCAGTTGAATAC</genome_strand>
        <mrna_strand>ATTTTAAAAAAAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAG...............................................................................................................................................................................................................................................................................................................................GCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAAAACAATTTAGAGGATCAAAAATCACGTTTCGATGAGTAAAAACAAATTAGGATTTGGATATTGAAGTTCAATAGTAAAAATATTGAAATTTCCCACATATTATGTTTGTTTTTCGCATAAGGAAAATGTTGAATTCAGTTGAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309621" ref_strand="+" ref_description="SGN-E309621 [cLEY-26-J11]">
      <seq>gaggaaaaatttcaaatttgttgctgcggaagtaattaaaatttcgatttcttccgctgcaacttcaattcaattttgattgattgatcttcttctattctcagcaatatcaattacaatggctcgttatttatccaacctgcaaaaatatctctgcttttgttgtagacctctgtttctgtagctatccagaggcgtggatacgcggccacggcagcacagggtggtgtttctggtagtgtaagaggtagtgggagtgttagaagcaatgtgatggaatcaaaccaagacttcatgggtacccagatcctgttactggttattacagaccagaaactcatgctaaggaaattgatgctgctgaaccttagaaaccatgttgttgaagtacaaacctagacaaaattgaaaaaaaaaaaagaacaaattagaggatcaagaatcacgtttcgatgagtagagacgaattaggatttggatattgaagttcaatagtagaaatattgtaatttctcacatattatgtttgtttttcgcataaggaaaatgttgaattcagttgaaaaaaaaaaaaanaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73709" stop="72235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73413" g_stop="73222" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73221" i_stop="72903" i_length="319">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72902" g_stop="72538" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="563" r_length="369" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="564" polyA_stop="598"/>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E309621" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73413" e_stop="73222"/>
          <exon e_start="72902" e_stop="72538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAAAAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAA-CTGCAAAAATATCTCTGCTTTTGTTGTAGA-CTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAA-CAAGACTTCATGGGTA-CCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAA-CTTAGAAA-CATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGAAAATGTTGAATTCAGTTGA</genome_strand>
        <mrna_strand>GAGGAAAAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACCTGCAAAAATATCTCTGCTTTTGTTGTAGACCTCTGTTTCTGTAGCTATCCAGAG...............................................................................................................................................................................................................................................................................................................................GCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACCAAGACTTCATGGGTACCCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACCTTAGAAACCATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGAAAATGTTGAATTCAGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287987" ref_strand="+" ref_description="SGN-E287987 [cLES-7-I24]">
      <seq>atttcgatttcttccgctgcaacttcaattcaattttgattgattgatcttcttctattctcagcaatatcaattacaatggctcgttatttatccaactgcaaaaatatctctgcttttgttgtagactctgtttctgtagctatccagaggcgtggatacgcggccacggcagcacagggtggtgtttctggtagtgtaagaggtagtgggagtgttagaagcaatgtgatggaatcaaacaagacttcatgggtaccagatcctgttactggttattacagaccagaaactcatgctaaggaaattgatgctgctgaacttagaaacatgttgttgaagtacaaacctagacaaaattgaaaaaaaaaaaagaacaaattagaggatcaagaatcacgtttcgatgagtagagacgaattaggatttggatattgaagttcaatagtagaaatattgtaatttctcacatattatgtttgtttttcgcataaagaaaatgttgaattcagttgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73673" stop="72235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73373" g_stop="73222" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73221" i_stop="72903" i_length="319">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72902" g_stop="72538" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="517" r_length="365" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="518" polyA_stop="529"/>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E287987" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73373" e_stop="73222"/>
          <exon e_start="72902" e_stop="72538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGAAAATGTTGAATTCAGTTGA</genome_strand>
        <mrna_strand>ATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAG...............................................................................................................................................................................................................................................................................................................................GCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAAGAAAATGTTGAATTCAGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371507" ref_strand="+" ref_description="SGN-E371507 [TUS-29-H16]">
      <seq>tccaactgcaaaaatatctctgcttttgttgtagactctgtttctgtagctatccagaggcgtggatacgcggccacggcagcacagggtggtgtttctggtagtgtaagaggtagtgggagtgttagaagcaatgtgatggaatcaaacaagacttcatgggtaccagatcctgttactggttattacagaccagaaactcatgctaaggaaattgatgctgctgaacttagaaacatgttgttgaagtacaaacctagacaaaattgaaaaaaaaaaaagaacaaattagaggatcaagaatcacgtttcgatgagtagagacgaattaggatttggatattgaagttcaatagtagaaatattgtaatttctcacatattatgtttgtttttcgcataaggaaaatgttgaattcagttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73580" stop="72235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73280" g_stop="73222" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73221" i_stop="72903" i_length="319">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72902" g_stop="72538" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="424" r_length="365" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E371507" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73280" e_stop="73222"/>
          <exon e_start="72902" e_stop="72538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGAAAATGTTGAATTCAGTTGA</genome_strand>
        <mrna_strand>TCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAG...............................................................................................................................................................................................................................................................................................................................GCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGAAAATGTTGAATTCAGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288027" ref_strand="+" ref_description="SGN-E288027 [cLES-7-N5]">
      <seq>aatttcatatttgttgctgcggaagtaattaaaatttcgatttcttccgctgcaacttcaattcaattttgattgattgatcttcttctattctcagcaatatcaattacaatggctcgttatttatccaactgcaaaaatatctctgcttttgttgtagactctgtttctgtagctatccagaggcgtggatacgcggccacggcagcacagggtggtgtttctggtagtgtaagaggtagtgggagtgttagaagcaatgtgatggaatcaaacaagacttcatgggtaccagatcctgttactggttattacagaccagaaactcatgctaaggaaattgatgctgctgaacttagaaacatgttgtttgaagtacaaacctagacaaaattgaaaaaaaaaaaagaacaaattagaggatcaagaatcacgtttcgatgagtagagacgaattaggatttggatattgaagttcaatagtagaaatattgtaatttctcacatattatgtttggttttcgcataaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73706" stop="72255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73406" g_stop="73222" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73221" i_stop="72903" i_length="319">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72902" g_stop="72555" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="534" r_length="349" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E288027" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73406" e_stop="73222"/>
          <exon e_start="72902" e_stop="72555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTG-TTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGAAA</genome_strand>
        <mrna_strand>AATTTCATATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAG...............................................................................................................................................................................................................................................................................................................................GCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGGTTTTCGCATAAGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E389668" ref_strand="+" ref_description="SGN-E389668 [TUS-4-N15](-)">
      <seq>tttaatttaaaataaaattaatattttaaagttaaattgttagcgagtaaagaaataaaaaaccgagttgtaagattgttggttctgtttttcctttttcttttcaaaatatgttaattttaccttttattatatacttttgggataatttatatcattgtcgttagtgtttacgttattttatttaaattttgaatttgtctctaataatataggcgtggatacgcggccacggcagcacagggtggtgtttttggtagtgtaagaggtagtgggagtgttagaagcaatgtgatggaatcaaacaagacttcatgggtaccagatcctgttactggttattacagaccagaaactcatgctaaggaaattgatgctgctgaacttagaaacatgttgttgaagtacaaacctagacaaaattgaaaaaaaaaaaagaacaaattagaggatcaagaatcacgtttcgatgagtagagacgaattaggatttggatattgaagttcaatagtagaaatgttgtaatttctcacatattatgtttgtttttcgcataagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73417" stop="72257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73117" g_stop="72557" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E389668" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73117" e_stop="72557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGA</genome_strand>
        <mrna_strand>TTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACCGAGTTGTAAGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTTTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATGTTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284691" ref_strand="+" ref_description="SGN-E284691 [cLES-3-B23]">
      <seq>aaaatttcaaatttgttgctgcggaagtaattaaaatttcgatttcttccgctgcaacttcaattcaattttgattgattgatcttcttctattctcagcaatatcaattacaatggctcgttatttatccaactgcaaaaatatctctgcttttgttgtagactctgtttctgtagctatccagaggcgtggatacgcggccacggcagcacagggtggtgtttctggtagtgtaagaggtagtgggagtgttagaagcaatgtgatggaatcaaacaagacttcatgggtaccagatcctgttactggttattacagaccagaaactcatgctaaggaaattgatgctgctgaacttagaaacatgttgttgaagtacaaacctagacaaaattgaaaaaaaaaaaaagaacaaattagaggatcaagaatcacgtttcgatgagtagagacgaattaggatttggatattgaagttcaatagtagaaatattgtaatttctcacatattatgtttgttttcgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73708" stop="72262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73408" g_stop="73222" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73221" i_stop="72903" i_length="319">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72902" g_stop="72562" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="528" r_length="341" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E284691" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73408" e_stop="73222"/>
          <exon e_start="72902" e_stop="72562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTG-AAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCAT</genome_strand>
        <mrna_strand>AAAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAG...............................................................................................................................................................................................................................................................................................................................GCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTG-TTTTCGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241413" ref_strand="+" ref_description="SGN-E241413 [cLED-28-F10]">
      <seq>ttttaaaaaaaatttcaaatttgttgctgcggaagtaattaaaatttcgatttcttccgctgcaacttcaattcaattttgattgattgatcttcttctattctcagcaatatcaattacaatggctcgttatttatccaactgcaaaaatatctctgcttttgttgtagactctgtttctgtagctatccagaggcgtggatacgcggccacggcagcacagggtggtgtttctggtagtgtaagaggtagtgggagtgttagaagcaatgtgatggaatcaaacaagacttcatgggtaccagatcctgttactggttattacagaccagaaactcatgctaaggaaattgatgctgctgaacttagaaacatgttgttgaagtacaaacctagacaaaattgaaaaaaaaaaaagaacaaattagaggatcaagaatcacgtttcgatgagtagagacgaattaggatttggatattgaagttcaatagtagaaatattgtaatttctcacatattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73716" stop="72277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73416" g_stop="73222" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73221" i_stop="72903" i_length="319">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72902" g_stop="72577" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="521" r_length="326" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E241413" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73416" e_stop="73222"/>
          <exon e_start="72902" e_stop="72577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAAAAAAAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTAT</genome_strand>
        <mrna_strand>TTTTAAAAAAAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAG...............................................................................................................................................................................................................................................................................................................................GCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E361359" ref_strand="+" ref_description="SGN-E361359 [cLPP-6-M1]">
      <seq>atttcttccgctgcaactttaattaaattttgattgattgatcttcttctgtactcagcaatatcgattacaatggctcgttatttatccaactgcaaaaatatctctgcttttgttgtagactctgtttctgtagctattcagaggcgtggatatgcagccgcggcagcacaaggtggtgtttctggtagtgtaagaggtagtgggggtgttagaagcaatgtgatggaatcaaacaagacttcatgggtaccagatcctgttactggttattacagaccagaaactcatgctaaggaaattgatgctgctgaacttagaaacatgttgttgaagtacaaacctagacaaaattaaaaaaaaaaaaaacaattagaggatcaagaatcacgtttcaacgagtagagacgaatttacgatttgaatgttggagctcaataatggaaatactgtaatttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73667" stop="72286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73367" g_stop="73222" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73221" i_stop="72903" i_length="319">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72902" g_stop="72586" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="461" r_length="315" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E361359" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73367" e_stop="73222"/>
          <exon e_start="72902" e_stop="72586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAA-TTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTC</genome_strand>
        <mrna_strand>ATTTCTTCCGCTGCAACTTTAATTAAATTTTGATTGATTGATCTTCTTCTGTACTCAGCAATATCGATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATTCAGAG...............................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCCGCGGCAGCACAAGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGGGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATT-AAAAAAAAAAAA-AAC-AATTAGAGGATCAAGAATCACGTTTCAACGAGTAGAGACGAATTTACGATTTGAATGTTGGAGCTCAATAATGGAAATACTGTAATTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283817" ref_strand="+" ref_description="SGN-E283817 [cLES-1-F4]">
      <seq>aatttcaaatttgttgctgcggaagtaattaaaatttcgatttcttccgctgcaacttcaattcaattttgattgattgatcttcttctattctcagcaatatcaattacaatggctcgttatttatccaactgcaaaaatatctctgcttttgttgtagactctgtttctgtagctatccagaggcgtggatacgcggccacggcagcacagggtggtgtttctggtagtgtaagaggtagtgggagtgttagaagcaatgtgatggaatcaaacaagacttcatgggtaccagatcctgttactggttattacagaccagaaactcatgctaaggaaattgatgctgctgaacttagaaacatgttgttgaagtacaaacctagacaaaattgaaaaaaaaaaaagaacaaattagaggatcaagaatcacgtttcgatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73706" stop="72344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73406" g_stop="73222" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73221" i_stop="72903" i_length="319">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72902" g_stop="72644" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="444" r_length="259" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E283817" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73406" e_stop="73222"/>
          <exon e_start="72902" e_stop="72644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAG</genome_strand>
        <mrna_strand>AATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAG...............................................................................................................................................................................................................................................................................................................................GCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E465342" ref_strand="+" ref_description="SGN-E465342 [cPRO-20-F24]">
      <seq>atacacagctaagagtcgctgcgacgcaaagagattaaaaaagttcaaatttgttgctgcggaagtaattaaagtttcgatttcttccgttgcaactttaatttaattttaatcgattgatcgcttctattcttagcaaagatcatcaattacaatggctcgttatttctccaactgcaaaaatatctctgcttttgttgtagactctgtttctgtagctattcagaggcgtggatacgcggccgcatcacaaggtggtgtttctggtagtgtaagaggtagtggggctgttagaagcaatgtgatggaatcaaacaagacttcatgggtaccagatcctgttactggttattacagaccagaaagtcatgctaaggaaattgatgctgctgagcttagaaacatgttgttgaagtacaaacctagacaaaattggaaaaccaaaaaccattataggatccagaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73710" stop="72358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73417" g_stop="73222" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="228" r_length="197" r_score="0.878"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73221" i_stop="72903" i_length="319">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72902" g_stop="72658" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="466" r_length="238" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E465342" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E465342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73417" e_stop="73222"/>
          <exon e_start="72902" e_stop="72658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTAAAAAAAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGC--A-AT-ATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAAT</genome_strand>
        <mrna_strand>AGATTAA-AAAAGTT-CAAATTTGTTGCTGCGGAAGTAATTAAAGTTTCGATTTCTTCCGTTGCAACTTTAATTTAATTTTAATCGATTGATC-GCTTCTATTCTTAGCAAAGATCATCAATTACAATGGCTCGTTATTTCTCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATTCAGAG...............................................................................................................................................................................................................................................................................................................................GCGTGGATACGCGG-C-C-GCATCACAAGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGGCTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAAGTCATGCTAAGGAAATTGATGCTGCTGAGCTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTG--GAAAACCAAA-AAC-CATTATAGGATCCAGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719783" ref_strand="+" ref_description="SGN-E719783 [FC08DE02]">
      <seq>aatcggccgaattgatatctaacattttccttcagattttaaaaaaaatttcaaatttgttgctgcggaagtaattaaaatttcgatttcttccgctgcaacttcaattcaattttgattgattgatcttcttctattctcagcaatatcaattacaatggctcgttatttatccaactgcaaaaatatctctgcttttgttgtaaactctgtttctgtagctatccagaggcgtggatacgcggccacggcagcacagggtggtgtttctggtagtgtaagaggtagtgggagtgttagaagcaatgtgatggaatcaaacaagacttcatgggtaccaaatcctgttactggttattacagaccagaaactcatgctaaggaaattgatgctgctgaacttagaaacatgttgttgaagtacaaacctagacaaaattgaaaaaaaaaaaaaaaacaatttaaaggatcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73738" stop="72359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73438" g_stop="73222" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="231" r_length="217" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73221" i_stop="72903" i_length="319">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72902" g_stop="72660" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="475" r_length="244" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E719783" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73438" e_stop="73222"/>
          <exon e_start="72902" e_stop="72660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATCTAACATTTTCCTTCAGATTTTAAAAAAAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTG-AAAAAAAAAAAAGAACAAATTAGAGGATCAAGA</genome_strand>
        <mrna_strand>ATATCTAACATTTTCCTTCAGATTTTAAAAAAAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAAACTCTGTTTCTGTAGCTATCCAGAG...............................................................................................................................................................................................................................................................................................................................GCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAAATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAAAAACAATTTAAAGGATCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724130" ref_strand="+" ref_description="SGN-E724130 [FC23AF04]">
      <seq>ggaatcaaacaagacttcatgggtaccagatcctgttactggttattacagaccaaaaactcatgctaaggaaattgatgctgctgaacttagaaacatgttgttgaagtacaaacctagacaaaattgaaaaaaaaaaaaaaacaatttagaggatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73121" stop="72363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72821" g_stop="72663" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E724130" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>159</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72821" e_stop="72663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCA</genome_strand>
        <mrna_strand>GGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAAAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAAAACAATTTAGAGGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241707" ref_strand="+" ref_description="SGN-E241707 [cLED-36-H9]">
      <seq>aaaaaaaatttcaaatttgttgctgcggaagtaattaaaatttcgatttcttccgctgcaacttcaattcaattttgattgattgatcttcttctattctcagcaatatcaattacaatggctcgttatttatccaactgcaaaaatatctctgcttttgttgtagactctgtttctgtagctatccagaggcgtggatacgcggccacggcagcacagggtggtgtttctggtagtgtaagacgtagtgggagtgttagaagcaatgtgatggaatcaaacaagacttcatgggtaccagatcctgttactggttattacagaccagaaactcatgctaaggaaattgatgctgctgaacttagaaacatgttgttgaagtacaaacctagacaaaattgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73712" stop="72382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73412" g_stop="73222" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73221" i_stop="72903" i_length="319">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72902" g_stop="72682" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="412" r_length="221" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E241707" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73412" e_stop="73222"/>
          <exon e_start="72902" e_stop="72682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAA</genome_strand>
        <mrna_strand>AAAAAAAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAG...............................................................................................................................................................................................................................................................................................................................GCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGACGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724279" ref_strand="+" ref_description="SGN-E724279 [FC23CE04]">
      <seq>ctgcggaagtaattaaaatttcgatttcttccgctgcaacttcaattcaattttgattgattgatcttcttctattctcagcaatatcaattacaatggctcgttatttatccaactgcaaaaatatctctgcttttgttgtagactctgtttctgtagctatccagaggcgtggatacgcggccacggcagcacagggtggtgtttctggtagtgtaagaggtagtgggagtgttagaagcaatgtgatggaatcaaacaagacttcatgggtaccagatcctgttactggttattacagaccagaaactcatgctaaggaaattgatgctgctgaacttagaaacatgttgttgaagtacaaacctagacaaaattgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73690" stop="72382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73390" g_stop="73222" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73221" i_stop="72903" i_length="319">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72902" g_stop="72682" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="390" r_length="221" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E724279" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73390" e_stop="73222"/>
          <exon e_start="72902" e_stop="72682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAA</genome_strand>
        <mrna_strand>CTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAG...............................................................................................................................................................................................................................................................................................................................GCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E363199" ref_strand="+" ref_description="SGN-E363199 [cLPP-19-I20]">
      <seq>ttcgatttcttccgctgcaactttaattaaattttgattgattgatcttcttctgtactcagcaatatcgattacaatggctcgttatttatccaactgcaaaaatatctctgcttttgttgtagactctgtttctgtagctattcagaggcgtggatatgcagccgcggcagcacaaggtggtgtttctggtagtgtaagaggtagtgggggtgttagaagcaatgtgatggaatcaaacaagacttcatgggtaccagatcctgttactggttattacagaccagaaactcatgctaaggaaattgatgctgctgaacttagaaacatgttgttgaagtacaaacctagacaaaattaataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73671" stop="72381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73371" g_stop="73222" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73221" i_stop="72903" i_length="319">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72902" g_stop="72682" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="371" r_length="221" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E363199" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73371" e_stop="73222"/>
          <exon e_start="72902" e_stop="72682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAA</genome_strand>
        <mrna_strand>TTCGATTTCTTCCGCTGCAACTTTAATTAAATTTTGATTGATTGATCTTCTTCTGTACTCAGCAATATCGATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATTCAGAG...............................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCCGCGGCAGCACAAGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGGGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTAATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549975" ref_strand="+" ref_description="SGN-E549975 [TUS-5-N15]">
      <seq>aaaaatttcaaatttgttgctgcggaagtaattaaaatttcgatttcttccgctgcaacttcaattcaattttgattgattgatcttcttctattctcagcaatatcaattacaatggctcgttatttatccaactgcaaaaatatctctgcttttgttgtagactctgtttctgtagctatccagaggtaaacaaaaatatcattctttttttcccaatttccgagtttaaaaacgggtttatctgagttaaaataaaatgaacaatagaaatttgtgtagctgtaaatcttttaatttaaaataaaattaatattttaaagttaaattgttagcgagtaaagaaataaaaaacagagttgtatgattgttggttctgtttttcctttttcttttcaaaatatgttaattttaccttttattatatacttttgggataatttatatcattgtcgttagtgtttacgttattttatttaaattttgaatttgtctctaataatataggcgtggatacgcggccacggcagcacagggtggtgtttctggtagtgtaagaggtagtgggagtgttagaagcaatgtgatggaatcaaacaagacttcatgggtaccagatcctgttactggttattacagaccagaaactcatgctaaggaaattgatgctgctgaacttagaaacatgttgttgaagtacaaacctagacaaaattgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73709" stop="72383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73409" g_stop="72683" g_length="727"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="727" r_length="727" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E549975" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73409" e_stop="72683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAA</genome_strand>
        <mrna_strand>AAAAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E363608" ref_strand="+" ref_description="SGN-E363608 [cLPP-3-I6]">
      <seq>tttccttcagatttttaaaaaaattcaaatttgttgctgcggaagtaattaaaatttcgatttcttccgctgcaactttaattaaattttgattgattgatcttcttctgtactcagcaatatcgattacaatggctcgttatttatccaactgcaaaaatatctctgcttttgttgtagactctgtttctgtagctattcagaggcgtggatatgcagccgcggcagcacaaggtggtgtttctggtagtgtaagaggtagtgggggtgttagaagcaatgtgatggaatcaaacaagacttcatgggtaccagatcctgttactggttattacagaccagaaactcatgctaaggaaattgatgctgctgaacttagaaacatgttgttgaagtacaaacctagacaaaattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73727" stop="72383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73427" g_stop="73222" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73221" i_stop="72903" i_length="319">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72902" g_stop="72684" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="424" r_length="219" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E363608" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73427" e_stop="73222"/>
          <exon e_start="72902" e_stop="72684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCTTCAGATTTTAAAAAAAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAA</genome_strand>
        <mrna_strand>TTTCCTTCAGATTTTTAAAAAAA-TTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTTAATTAAATTTTGATTGATTGATCTTCTTCTGTACTCAGCAATATCGATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATTCAGAG...............................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCCGCGGCAGCACAAGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGGGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360210" ref_strand="+" ref_description="SGN-E360210 [cLPP-14-A16]">
      <seq>agatttttaaaaaaattcaaatttgttgctgcggaagtaattaaaatttcgatttcttccgctgcaactttaattaaattttgattgattgatcttcttctgtactcagcaatatcgattacaatggctcgttatttatccaactgcaaaaatatctctgcttttgttgtagactctgtttctgtagctattcagaggcgtggatatgcagccgcggcagcacaaggtggtgtttctggtagtgtaagaggtagtgggggtgttagaagcaatgtgatggaatcaaacaagacttcatgtaccagatcctgttactggttattacagaccagaaactcatgctaaggaaattgatgctgctgaacttagaaacatgttgttgaagtacaaacctagacaaaattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73719" stop="72383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73419" g_stop="73222" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73221" i_stop="72903" i_length="319">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72902" g_stop="72684" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="414" r_length="217" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E360210" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73419" e_stop="73222"/>
          <exon e_start="72902" e_stop="72684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTTAAAAAAAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAA</genome_strand>
        <mrna_strand>AGATTTTTAAAAAAA-TTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTTAATTAAATTTTGATTGATTGATCTTCTTCTGTACTCAGCAATATCGATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATTCAGAG...............................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCCGCGGCAGCACAAGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGGGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCAT--GTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E364252" ref_strand="+" ref_description="SGN-E364252 [cLPP-20-G21]">
      <seq>atttcgatttcttccgctgcaactttaattaaattttgattgattgatcttcttctgtactcagcaatatcgattacaatggctcgttatttatccaactgcaaaaatatctctgcttttgttgtagactctgtttctgtagctattcagaggcgtggatatgcagccgcggcagcacaaggtggtgtttctggtagtgtaagaggtagtgggggtgttagaagcaatgtgatggaatcaaacaagacttcatgggtaccagatcctgttactggttattacagaccagaaactcatgctaaggaaattgatgctgctgaacttagaaacatgttgttgaagtacaaacctagacaaaattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73673" stop="72383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73373" g_stop="73222" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73221" i_stop="72903" i_length="319">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72902" g_stop="72684" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="371" r_length="219" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E364252" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73373" e_stop="73222"/>
          <exon e_start="72902" e_stop="72684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAA</genome_strand>
        <mrna_strand>ATTTCGATTTCTTCCGCTGCAACTTTAATTAAATTTTGATTGATTGATCTTCTTCTGTACTCAGCAATATCGATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATTCAGAG...............................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCCGCGGCAGCACAAGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGGGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E362625" ref_strand="+" ref_description="SGN-E362625 [cLPP-1-F2]">
      <seq>tttaattaaattttgattgattgatcttcttctgtactcagcaatatcgattacaatggctcgttatttatccaactgcaaaaatatctctgcttttgttgtagactctgtttctgtagctattcagaggcgtggatatgcagccgcggcagcacaaggtggtgtttctggtagtgtaagaggtagtgggggtgttagaagcaatgtgatggaatcaaacaagacttcatgggtaccagatcctgttactggttattacagaccagaaactcatgctaaggaaattgatgctgctgaacttagaaacatgttgttgaagtacaaacctagacaaaattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73650" stop="72383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73350" g_stop="73222" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73221" i_stop="72903" i_length="319">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72902" g_stop="72684" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="348" r_length="219" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E362625" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73350" e_stop="73222"/>
          <exon e_start="72902" e_stop="72684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAA</genome_strand>
        <mrna_strand>TTTAATTAAATTTTGATTGATTGATCTTCTTCTGTACTCAGCAATATCGATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATTCAGAG...............................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCCGCGGCAGCACAAGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGGGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360338" ref_strand="+" ref_description="SGN-E360338 [cLPP-8-E16]">
      <seq>tgattgattgatcttcttctgtactcagcaatatcgattaccaatggctcgttatttatccaacctgcaaaaatatctctgcttttgttgtagacctctgtttctgtagctattcagaggccgtggatatgcagcccgcggcagcacaaggtggtgtttctggtagtgtaagaggtagtgggggtgttagaagcaatgtgatggaatcaaacaagacttcatgggtaccagatcctgttactggttattacagaccagaaactcatgctaaggaaattgatgctgctgaacttagaaacatgttgttgaagtacaaacctagacaaaattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73637" stop="72383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73337" g_stop="73222" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73221" i_stop="72903" i_length="319">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72902" g_stop="72684" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="340" r_length="221" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E360338" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73337" e_stop="73222"/>
          <exon e_start="72902" e_stop="72684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTA-CAATGGCTCGTTATTTATCCAA-CTGCAAAAATATCTCTGCTTTTGTTGTAGA-CTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGG-CGTGGATACGC-GGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAA</genome_strand>
        <mrna_strand>TGATTGATTGATCTTCTTCTGTACTCAGCAATATCGATTACCAATGGCTCGTTATTTATCCAACCTGCAAAAATATCTCTGCTTTTGTTGTAGACCTCTGTTTCTGTAGCTATTCAGAG...............................................................................................................................................................................................................................................................................................................................GCCGTGGATATGCAGCCCGCGGCAGCACAAGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGGGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E363287" ref_strand="+" ref_description="SGN-E363287 [cLPP-4-G14]">
      <seq>tctgcttttgttgtagactctgtttctgtagctattcagaggcgtggatatgcagccgcggcagcacaaggtggtgtttctggtagtgtaagaggtagtgggggtgttagaagcaatgtgatggaatcaaacaagacttcatgggtaccagatcctgttactggttattacagaccagaaactcatgctaaggaaattgatgctgctgaacttagaaacatgttgttgaagtacaaacctagacaaaattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73562" stop="72383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73262" g_stop="73222" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73221" i_stop="72903" i_length="319">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72902" g_stop="72684" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="260" r_length="219" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E363287" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>260</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73262" e_stop="73222"/>
          <exon e_start="72902" e_stop="72684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAA</genome_strand>
        <mrna_strand>TCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATTCAGAG...............................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCCGCGGCAGCACAAGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGGGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E363113" ref_strand="+" ref_description="SGN-E363113 [cLPP-19-O9]">
      <seq>aagtaattaaaatttcgatttcttgcgctgcaactttaattaaattttgattgattgatcttcttctgtactcagcaatatcgattacaatggctcgttatttatccaactgcaaaaatatctctgcttttgttgtagactctgtttctgtagctattcagaggcgtggatatgcagccgcggcagcacaaggtggtgtttctggtagtgtaagaggtagtgggggtgttagaagcaatgtgatggaatcaaacaagacttcatgggtaccagatcctgttactggttattacagaccagaaactcatgctaaggaaattgatgctgctgaacttagaaacatgtttgtgaagtgcaaacctagacaaaaattaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73684" stop="72385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73384" g_stop="73222" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73221" i_stop="72903" i_length="319">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72902" g_stop="72686" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="380" r_length="217" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E363113" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73384" e_stop="73222"/>
          <exon e_start="72902" e_stop="72686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAA</genome_strand>
        <mrna_strand>AAGTAATTAAAATTTCGATTTCTTGCGCTGCAACTTTAATTAAATTTTGATTGATTGATCTTCTTCTGTACTCAGCAATATCGATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATTCAGAG...............................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCCGCGGCAGCACAAGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGGGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTTGTGAAGTGCAAACCTAGACAAAAATTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360211" ref_strand="+" ref_description="SGN-E360211 [cLPP-14-A18]">
      <seq>tttaattaaattttgattgattgatcttcttctgtactcagcaatatcgattacaatggctcgttatttatccaactgcaaaaatatctctgcttttgttgtagactctgtttctgtagctattcagaggcgtggatatgcagccgcggcagcacaaggtggtgtttctggtagtgtaagaggtagtgggggtgttagaagcaatgtgatggaatcaaacaagacttcatgggtaccagatcctgttactggttattacagaccagaaactcatgctaaggaaattgatgctgctgaacttagaaacatgttgttgaagtacaaacctagacaaaattaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73650" stop="72385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73350" g_stop="73222" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73221" i_stop="72903" i_length="319">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72902" g_stop="72686" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="346" r_length="217" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E360211" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>346</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73350" e_stop="73222"/>
          <exon e_start="72902" e_stop="72686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAA</genome_strand>
        <mrna_strand>TTTAATTAAATTTTGATTGATTGATCTTCTTCTGTACTCAGCAATATCGATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATTCAGAG...............................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCCGCGGCAGCACAAGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGGGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E359545" ref_strand="+" ref_description="SGN-E359545 [cLPP-5-C15]">
      <seq>gatttttaaaaaaattcaaatttgttgctgcggaagtaattaaaatttcgatttcttccgctgcaactttaattaaattttgattgattgatcttcttctgtactcagcaatatcgattacaatggctcgttatttatccaactgcaaaaatatctctgcttttgttgtagactctgtttctgtagctattcagaggcgtggatatgcagccgcggcagcacaaggtggtgtttctggtagtgtaagaggtagtgggggtgttagaagcaatgtgatggaatcaaacaagacttcatgggtaccagatcctgttactggttattacagaccagaaactcatgctaaggaaattgatgctgctgaacttagaaacatgttgttgaagtacaaacctagacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73718" stop="72396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73418" g_stop="73222" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73221" i_stop="72903" i_length="319">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72902" g_stop="72689" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="410" r_length="214" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E359545" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73418" e_stop="73222"/>
          <exon e_start="72902" e_stop="72689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTAAAAAAAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAA</genome_strand>
        <mrna_strand>GATTTTTAAAAAAA-TTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTTAATTAAATTTTGATTGATTGATCTTCTTCTGTACTCAGCAATATCGATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATTCAGAG...............................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCCGCGGCAGCACAAGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGGGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360463" ref_strand="+" ref_description="SGN-E360463 [cLPP-8-A6]">
      <seq>ccccgggctgcaaggttgctgcggaagtaattaaaatttcgatttcttccgctgcaactttaattaaattttgattgattgatcttcttctgtactcagcaatatcgattacaatggctcgttatttatccaactgcaaaaatatctctgcttttgttgtagactctgtttctgtagctattcagaggcgtggatatgcagccgcggcagcacaaggtggtgtttctggtagtgtaagaggtagtgggggtgttagaagcaatgtgatggaatcaaacaagacttcatgggtaccagatcctgttactggttattacagaccagaaactcatgctaaggaaattgatgctgctgaacttagaaacatgttgttgaagtacaaacctagacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73694" stop="72396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73394" g_stop="73222" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="187" r_length="173" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73221" i_stop="72903" i_length="319">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72902" g_stop="72689" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="401" r_length="214" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E360463" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73394" e_stop="73222"/>
          <exon e_start="72902" e_stop="72689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAA</genome_strand>
        <mrna_strand>GTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTTAATTAAATTTTGATTGATTGATCTTCTTCTGTACTCAGCAATATCGATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATTCAGAG...............................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCCGCGGCAGCACAAGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGGGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365009" ref_strand="+" ref_description="SGN-E365009 [cLPP-17-N13]">
      <seq>taattaaaatttcgatttcttccgctgcaactttaattaaattttgattgattgatcttcttctgtacctcagcaatatcgattacaatggctcgttatttatccaactgcaaaaatatctctgcttttgttgtagactctgtttctgtagctattcagaggcgtggatatgcagccgcggcagcacaaggtggtgtttctggtagtgtaagaggtagtgggggtgttagaagcaatgtgatggaatcaaacaagacttcatgggtaccagatcctgttactggttattacagaccagaaactcatgctaaggaaattgatgctgctgaacttagaaacatgttgttgaagtacaaacctagacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73681" stop="72396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73381" g_stop="73222" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73221" i_stop="72903" i_length="319">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72902" g_stop="72689" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="375" r_length="214" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E365009" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73381" e_stop="73222"/>
          <exon e_start="72902" e_stop="72689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTAT-TCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAA</genome_strand>
        <mrna_strand>TAATTAAAATTTCGATTTCTTCCGCTGCAACTTTAATTAAATTTTGATTGATTGATCTTCTTCTGTACCTCAGCAATATCGATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATTCAGAG...............................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCCGCGGCAGCACAAGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGGGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550048" ref_strand="+" ref_description="SGN-E550048 [TUS-5-N8]">
      <seq>atcttaaaaaaatttcaaatttgttgctgcggaagtaattaaaatttcgatttcttccgctgcaacttcaattcaattttgattgattgatcttcttctattctcagcaatatcaattacaatggctcgttatttatccaactgcaaaaatatctctgcttttgttgtagactctgtttctgtagctatccagaggtaaacaaaaatatcattctttttttcccaatttccgagtttaaaaacgggtttatctgagttaaaataaaatgaacaatagaaatttgtgtagctgtaaatcttttaatttaaaataaaattaatattttaaagttaaattgttagcgagtaaagaaataaaaaacagagttgtatgattgttggttctgtttttcctttttcttttcaaaatatgttaattttaccttttattatatacttttgggataatttatatcattgtcgttagtgtttacgttattttatttaaattttgaatttgtctctaataatataggcgtggatacgcggccacggcagcacagggtggtgtttctggtagtgtaagaggtagtgggagtgttagaagcaatgtgatggaatcaaacaagacttcatgggtaccagatcctgttactggttattacagaccagaaactcatgctaaagaaattgatgctgctgaacttagaaacatgttgttgaagtacaacctagacaaaattgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73717" stop="72391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73417" g_stop="72691" g_length="727"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="725" r_length="725" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E550048" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73417" e_stop="72691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTAAAAAAAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAA</genome_strand>
        <mrna_strand>ATCTTAAA-AAAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAAGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTAC-AACCTAGACAAAATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E402409" ref_strand="+" ref_description="SGN-E402409 [PPC-7-L21]">
      <seq>gatcccccgggctgcatgtcgctgcgacgcaaagagattagaaaaaaagttcaaatttgttgctgcggaagtaattaaagtttcgatttcttccgctgcaactttaatttaattttaatcgattgatcgcttctattcttagcaaagatcatcaattacaatggctcgttatttcaccaactgcaaaaatatctctgcttttgttgtagactctgtttctgtagctattcagaggcgtggatacgcggccgcatcacaaggtggtgtttctggtagtgtaagaggtagtggagctgttagaagcaatgtgatggaatcaaacaagacttcatgggtaccagatcctgttactggttattacagacccagaaagtcatgctaaggaaattgatgctgctgagcttagaaacatgttgttgaagtacaaacctagacaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73719" stop="72395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73417" g_stop="73222" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="234" r_length="198" r_score="0.883"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73221" i_stop="72903" i_length="319">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72902" g_stop="72695" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="440" r_length="206" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E402409" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E402409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73417" e_stop="73222"/>
          <exon e_start="72902" e_stop="72695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTAAAAAAAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGC--A-AT-ATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGA-CCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAAT</genome_strand>
        <mrna_strand>ATTAGAAAAAAAGTT-CAAATTTGTTGCTGCGGAAGTAATTAAAGTTTCGATTTCTTCCGCTGCAACTTTAATTTAATTTTAATCGATTGATC-GCTTCTATTCTTAGCAAAGATCATCAATTACAATGGCTCGTTATTTCACCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATTCAGAG...............................................................................................................................................................................................................................................................................................................................GCGTGGATACGCGG-C-C-GCATCACAAGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGAGCTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCCAGAAAGTCATGCTAAGGAAATTGATGCTGCTGAGCTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237476" ref_strand="+" ref_description="SGN-E237476 [cLED-19-A2]">
      <seq>ttccttcagattttaaaaaaaatttcaaatttgttgctgcggaagtaattaaaatttcgatttcttccgctgcaacttcaattcaattttgattgattgatcttcttctattctcagcaatatcaattacaatggctcgttatttatccaactgcaaaaatatctctgcttttgttgtagactctgtttctgtagctatccagaggcgtggatacgcggccacggcagcacagggtggtgtttctggtagtgtaagaggtagtgggagtgttagaatcaatgtgatggaatcaaacaagacttcatgggtaccagatcctgttactgggtattacagaccagaaactcatgctaaggaaattgatgctgctgaacttagaaacatgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73726" stop="72419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73426" g_stop="73222" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73221" i_stop="72903" i_length="319">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72902" g_stop="72719" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="389" r_length="184" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E237476" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73426" e_stop="73222"/>
          <exon e_start="72902" e_stop="72719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTCAGATTTTAAAAAAAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTG</genome_strand>
        <mrna_strand>TTCCTTCAGATTTTAAAAAAAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAG...............................................................................................................................................................................................................................................................................................................................GCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAATCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGGTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390064" ref_strand="+" ref_description="SGN-E390064 [TUS-4-N8]">
      <seq>cagatttcaaaaaaatttcaaatttgttgctgcggaagtaattaaaatttcgatttcttccgctgcaacttcaattcaattttgattgattgatcttcttctattctcagcaatatcaattacaatggctcgttatttatccaactgcaaaaatatctctgcttttgttgtagactctgtttctgtagctatccagaggtaaacaaaaatatcattctttttttcccaatttccgagtttaaaaacgggtttatctgagttaaaataaaatgaacaatagaaatttgtgtagctgtaaatcttttaatttaaaataaaattaatattttaaagttaaattgttagcgagtaaagaaataaaaaacagagttgtatgattgttggttctgtttttcctttttcttttcaaaatatgttaattttaccttttattatatacttttgggataatttatatcattgtcgttagtgtttacgttattttatttaaattttgaatttgtctctaataatataggcgtggatacgcggccacggcagcacagggtggtgtttctggtagtgtaagaggtagtgggagtgttagaaagcatgtgatggaatcaacaagacttcatgggtaccagatcctgttactggttattacagaccagaaactcatgctaaggaaattgatgctgctgaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73720" stop="72431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73420" g_stop="72731" g_length="690"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="688" r_length="688" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E390064" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73420" e_stop="72731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATTTTAAAAAAAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTT</genome_strand>
        <mrna_strand>CAGAT-TTCAAAAAAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAAGCATGTGATGGAATC-AACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390060" ref_strand="+" ref_description="SGN-E390060 [TUS-4-N15]">
      <seq>atactttcaaatttgttgctgcggaagtaattaaaatttcgatttcttccgctgcaacttcaattcaattttgattgattgatcttcttctattctcagcaatatcaattacaatggctcgttatttatccaactgcaaaaatatctctgcttttgttgtagactctgtttctgtagctatccagaggtaaacaaaaatatcattctttttttcccaatttccgagtttaaaaacgggtttatctgagttaaaataaaatgaacaatagaaatttgtgtagctgtaaatcttttaatttaaaataaaattaatattttaaagttaaattgttagcgagtaaagaaataaaaaacagagttgtatgattgttggttctgtttttcctttttcttttcaaaatatgttaattttaccttttattatatacttttgggataatttatatcattgtcgttagtgtttacgttattttatttaaattttgaatttgtctctaataatataggcgtggatacgcggccacggcacacagggtggtgtttctggtagtgtaagaggtaatgggagtgttagaaagcatgtgatggaatcaaacaagacttcatgggtaccagatcctgttactggttattacagaccagaaactcatgctaangaaattgatgctgctgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73708" stop="72433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73408" g_stop="72733" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="675" r_length="675" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E390060" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73408" e_stop="72733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAAC</genome_strand>
        <mrna_strand>ATACTTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCA-CACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAATGGGAGTGTTAGAAAGCATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAANGAAATTGATGCTGCTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549797" ref_strand="+" ref_description="SGN-E549797 [TUS-6-D6]">
      <seq>acaatttcaaatttgttgctgcggaagtaattaaaatttcgatttcttccgctgcaacttcaattcaattttgattgattgatcttcttctattctcagcaatatcaattacaatggctcgttatttatccaactgcaaaaatatctctgcttttgttgtagactctgtttctgtagctatccagaggtaaacaaaaatatcattctttttttcccaatttccgagtttaaaaacgggtttatctgagttaaaataaaatgaacaatagaaatttgtgtagctgtaaatcttttaatttaaaataaaattaatattttaaagttaaattgttagcgagtaaagaaataaaaaacagagttgtatgattgttggttctgtttttcctttttcttttcaaaatatgttaattttaccttttattatatacttttgggataatttatatcattgtcgttagtgtttacgttattttatttaaattttgaatttgtctctaataatataggcgtggatacgcggccacggcagcacagggtggtgtttctggtagtgtaagaggtagtgggagtgttagaagcaatgtgatggaatcaaacaagacttcatgggtaccagatcctgttactggttattacagacccaaactcatgctaaaggaattgatgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73708" stop="72438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73408" g_stop="72738" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="670" r_length="670" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E549797" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73408" e_stop="72738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGC</genome_strand>
        <mrna_strand>ACAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACC-CAAACTCATGCTAAAGGAATTGATGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E362293" ref_strand="+" ref_description="SGN-E362293 [cLPP-10-N5]">
      <seq>aaaattcaaatttgttgctgcggaagtaattaaaatttggatttcttccgctgcaactttaatcaaattttgattgattgatcttcttctgtactcagcaatatcgatgacaatggctcgttatttatccaactgcaaaaatatctctgcttttgttgtagactctgtttctgtagctattcagaggcgtggatatgcagccgcggcagcacaaggtggtgtttctggtagtgtaagacgtagtgggggtgttagaagcaatgtgatggaatcaaacaagacttcatgggtaccagatcctgttactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73708" stop="72481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73407" g_stop="73222" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73221" i_stop="72903" i_length="319">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72902" g_stop="72781" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="308" r_length="122" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E362293" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73407" e_stop="73222"/>
          <exon e_start="72902" e_stop="72781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTG</genome_strand>
        <mrna_strand>AAAATTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTGGATTTCTTCCGCTGCAACTTTAATCAAATTTTGATTGATTGATCTTCTTCTGTACTCAGCAATATCGATGACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATTCAGAG...............................................................................................................................................................................................................................................................................................................................GCGTGGATATGCAGCCGCGGCAGCACAAGGTGGTGTTTCTGGTAGTGTAAGACGTAGTGGGGGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233752" ref_strand="+" ref_description="SGN-E233752 [cLED-14-O17]">
      <seq>tcagattttaaaaaaaatttcaaatttgttgctgcggaagtaattaaaatttcgatttcttccgctgcaacttcaattcaattttgattgattgatcttcttctattctcagcaatatcaattacaatggctcgttatttatccaactgcaaaaatatctctgcttttgttgtagactctgtttctgtagctatccagaggcgtggatacgcggccacggcagcacagggtggtgtttctggtagtgtaagaggtagtgggagtgttataagcaatgtgatggaatcaaacaagacttcatgggtacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73721" stop="72495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73421" g_stop="73222" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73221" i_stop="72903" i_length="319">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72902" g_stop="72795" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="308" r_length="108" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E233752" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73421" e_stop="73222"/>
          <exon e_start="72902" e_stop="72795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGATTTTAAAAAAAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACC</genome_strand>
        <mrna_strand>TCAGATTTTAAAAAAAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAG...............................................................................................................................................................................................................................................................................................................................GCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTATAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392791" ref_strand="+" ref_description="SGN-E392791 [TUS-36-N6]">
      <seq>aaaatttcaaatttgttgctgcggaagtaattaaaatttcgatttcttccgctgcaacttcaattcaattttgattgattgatcttcttctattctcagcaatatcaattacaatggctcgttatttatccaactgcaaaaatatctctgcttttgttgtatactctgtttctgtagctatccagaggtaaacaaaaatatcattctttttttcccaatttccgagttttttaacgggtttatctgatttaaaataaaatgaacaatagaaatttgtgtagctgtaaatcttttaatttaaaataaaattaatattttaaagttaaattgttagcgagtaaagaaataaaaaacagagttgtatgattgttggttctgtttttcctttttcttttcaaaatatgttaattttaccttttattatatacttttgggataatttatatcattgtcgttagtgtttacgttattttatttaaattttgaatttgtctctaataatataggcgtggatacgcggccacggcagcacagggtggtgtttctggtagtgtaagaggtagtgggagtgttagaagcaatgtgatggaatcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73708" stop="72513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73408" g_stop="72813" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E392791" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73408" e_stop="72813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAA</genome_strand>
        <mrna_strand>AAAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTATACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTTTTAACGGGTTTATCTGATTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241404" ref_strand="+" ref_description="SGN-E241404 [cLED-28-P23]">
      <seq>gattgattgatcttcttctattctcagcaatatcaattacaatggctcgttatttatccaactgcaaaaatatctctgcttttgttgtagactctgtttctgtagctatccagaggcgtggatacgcggccacggcagcacagggtggtgtttctggtagtgcaagaggccgtgggagtgtttgaaacacataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73636" stop="72527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73336" g_stop="73222" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73221" i_stop="72903" i_length="319">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72902" g_stop="72823" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="195" r_length="80" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E241404" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>195</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73336" e_stop="73222"/>
          <exon e_start="72902" e_stop="72823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGA</genome_strand>
        <mrna_strand>GATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAG...............................................................................................................................................................................................................................................................................................................................GCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGCAAGAGGCCGTGGGAGTGTTTGAAACACATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237991" ref_strand="+" ref_description="SGN-E237991 [cLED-18-L3]">
      <seq>ttctgtatctatccattgttaaactaaaatatcattctttttttcccaatttccgagtttaaaaacgggtttatctgagttaaaataaaatgaacaatagaaatttgtgtagctgtaaatcttttaatttaaaataaaattaatattttaaagttaaattgttagcgagtaaagaaataaaaaacagagttgtatgattgttggttctgtttttcctttttcttttcaaaatatgttaattttaccttttattatatacttttgggataatttatatcattgtcgttagtgtttacgttattttatttaaattttgaatttgtctctaataatataggcgtggatacgcggtcacggctgcacagggtggtgtttctggtagtgtaagaggtagtgggagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73539" stop="72539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73239" g_stop="72839" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E237991" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73239" e_stop="72839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGT</genome_strand>
        <mrna_strand>TTCTGTATCTATCCATTGTTAAACTAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGTCACGGCTGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396430" ref_strand="+" ref_description="SGN-E396430 [TUS-48-F13]">
      <seq>tttctgtagctatccagaggtaaacaaaaatatcattctttttttcccaatttccgagtttaaaaacgggtttatctgagttaaaataaaatgaacaatagaaatttgtgtagctgtaaatcttttaatttaaaataaaattaatattttaaagttaaattgttagcgagtaaagaaataaaaaacagagttgtatgattgttggttctgtttttcctttttcttttcaaaatatgttaattttaccttttattatatacttttgggataatttatatcattgtcgttagtgtttacgttattttatttaaattttgaatttgtctctaataatataggcgtggatacgcggccacggcagcacagggtggtgtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73540" stop="72564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73240" g_stop="72864" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E396430" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73240" e_stop="72864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTC</genome_strand>
        <mrna_strand>TTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233496" ref_strand="+" ref_description="SGN-E233496 [cLED-9-I13]">
      <seq>aaaatttcaaatttgttgctgcggaagtaattaaaatttcgatttcttccgctgcaacttcaattcaattttgattgattgatcttcttctattctcagcaatatcaattacaatggctcgttatttatccaactgcaaaaatatctctgcttttgttgtagactctgtttctgtagctatccagaggtaaacaaaaatatcattctttttttcccaatttccgagtttaaaaacgggtttatctgagttaaaataaaatgaacaatagaaatttgtgtagctgtaaatcttttaatttaaaataaaattaatattttaaagttaaattgttagcgagtaaagaaataaaaaacagagttgtatgattgttggttctgtttttcctttttcttttcaaaatatgttaattttaccttttattatatacttttgggataatttatatcattgtcgttagtgtttacgttattttatttaaattttgaatttgtctctaataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73708" stop="72607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73408" g_stop="72907" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E233496" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73408" e_stop="72907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAAT</genome_strand>
        <mrna_strand>AAAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233744" ref_strand="+" ref_description="SGN-E233744 [cLED-14-K19]">
      <seq>agattttaaaaaaaatttcaaatttgttgctgcggaagtaattaaaatttcgatttcttccgctgcaacttcaattcaattttgattgattgatcttcttctattctcagcaatatcaattacaatggctcgttatttatccaactgcaaaaatatctctgcttttgttgtagactctgtttctgtagctatccagaggtaaacaaaaatatcattctttttttcccaatttccgagtttaaaaacgggtttatctgagttaaaataaaatgaacaatagaaatttgtgtagctgtaaatcttttaatttaaaataaaattaatattttaaagttaaattgttagcgagtaaagaaataaaaaacagagttgtatgattgttggttctgtttttcctttttcttttcaaaatatgttaattttaccttttattatatacttttgggataatttatatcattgtcgttagtgtttacgttattttatttaaattttgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73719" stop="72621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73419" g_stop="72921" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E233744" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73419" e_stop="72921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTTAAAAAAAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAAT</genome_strand>
        <mrna_strand>AGATTTTAAAAAAAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242016" ref_strand="+" ref_description="SGN-E242016 [cLED-27-M24]">
      <seq>aaatttcaaatttgttgctgcggaagtaattaaaatttcgatttcttccgctgcaacttcaattcaattttgattgattgatcttcttctattctcagcaatatcaattacaatggctcgttatttatccaactgcaaaaatatctctgcttttgttgtagactctgtttctgtagctatccagaggtaaacaaaaatatcattctttttttcccaatttccgagtttaaaaacgggtttatctgagttaaaataaaatgaacaatagaaatttgtgtagctgtaaatcttttaatttaaaataaaattaatattttaaagttaaattgttagcgagtaaagaaataaaaaacagagttgtatgattgttggntctgtttttcctttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73707" stop="72718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73407" g_stop="73018" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E242016" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73407" e_stop="73018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTC</genome_strand>
        <mrna_strand>AAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGNTCTGTTTTTCCTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244768" ref_strand="+" ref_description="SGN-E244768 [cLED-38-P9]">
      <seq>aaatttcaaatttgttgctgcggaagtaattaaaatttcgatttcttccgctgcaacttcaattcaattttgattgattgatcttcttctattctcagcaatatcaattacaatggctcgttatttatccaactgcaaaaatatctctgcttttgttgtagactctgtttctgtagctatccagaggtaaacaaaaatatcattctttttttcccaatttccgagtttaaaaacgggtttatctgagttaaaataaaatgaacaatagaaatttgtgtagctgtaaatcttttaatttaaaataaaattaatattttaaagttaaattgttagcgagtaaagaaataaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73707" stop="72756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73407" g_stop="73056" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E244768" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73407" e_stop="73056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAA</genome_strand>
        <mrna_strand>AAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287777" ref_strand="+" ref_description="SGN-E287777 [cLES-19-I3]">
      <seq>agattttaaaaaaaatttcaaatttgttgctgcggaagtaattaaaatttcgatttcttccgctgcaacttcaattcaattttgattgattgatcttcttctattctcagcaatatcaattacaatggctcgttatttatccaactgcaaaaatatctctgcttttgttgtagactctgtttctgtagctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73719" stop="72928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73419" g_stop="73228" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E287777" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>192</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73419" e_stop="73228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTTAAAAAAAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTAT</genome_strand>
        <mrna_strand>AGATTTTAAAAAAAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713540" ref_strand="+" ref_description="SGN-E713540 [FB08DF09]">
      <seq>cctcttggccagcaaaattgctgcagaacgacaacttacagctgactctgccattgctaacattacctgcagcaattcggtgaacatctatataggcattggcgtaccatggctaatcgatacattgtacaactacattgcatacaacgagccattgcgaatagaaaatgcagaaggactaagtttctctctgcttgttttcttctctacttctgtagcctgcatcggtgttttggtgtttagacgactcactatcggtgctgagcttggcgggccaagagtttgggcatgggtaacttgcatattcttcatgttgttatggcttatatttgttgtgctatcttctctcagagtttctggtattatataacaatcttagtccaaatcattcctagaaaggggtaatttttttactcatcgtatctatcgatggatattggtctgagatgggtttaaacaacaatctatggtcgattctgatttgcttgggattgatagtagttgttattgttgtattatattgatttatggatattggactgagatgggcttaaatggagcgatatcaacattgaagatttatatggtcgatttctatagtagttattgttgtattgtaatgatcgatgtaatgtagccttacactcttgcaagttgtatgcatgcatgcatgcactcaattatgaattttggtaaagtgtaaattttttaaatttattgtattgatcgacgtatattgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77840" stop="76119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77541" g_stop="77470" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77469" i_stop="77089" i_length="381">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77088" g_stop="76419" g_length="670"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="742" r_length="670" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E713540" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77541" e_stop="77470"/>
          <exon e_start="77088" e_stop="76419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCGTGGCCAGCAAAATTGCTGCAGAACGACAACTTACAGCTGACTCTGCCATTGCTAACATTACCTGCAGGTTTCTTTATCAGTCAACAATGCCCTTAACCTATTACATATTATTATACATTGATAGAAGTCATGCCAGGTCCATAGAGATTGGCAAATTGCTTTCGTCGTTTTCCAATTTTCATTGTCCCCTTCTCCAAGTCTCACGGAATAGCAATTTAGGTGGTATAGAAGTTCATCAATTTTATTTTTTCCCTTATTTGCAGTATGTAGATGAACCAAACAACCCCTTAATACAGCAGTTAGCCAATGCCTAGCTAGTAAAAATTCACATAAGGTGCATGTTTTTATTAACTTAATTTGTTAACCTCTTTAGGAAATGTGAATTTGACATTGTCATTCCTTGGAGCAAGATATCCTGGTGTCTGACTTAGTGTTTTTGTCCTTGTAGCAATTCGGTGAACATCTATATAGGCATTGGCGTACCATGGCTAATCGATACATTGTACAACTACATTGCATACAACGAGCCATTGCGAATAGAAAATGCAGAAGGACTAAGTTTCTCTCTGCTTGTTTTCTTCTCTACTTCTGTAGCCTGCATCGGTGTTTTGGTGTTTAGACGACTCACTATCGGTGCTGAGCTTGGCGGGCCAAGAGTTTGGGCATGGGTAACTTGCATATTCTTCATGTTGTTATGGCTTATATTTGTTGTGCTATCTTCTCTCAGAGTTTCTGGTATTATATAACAATCTTAGTCCAAATCATTCCTAGAAAGGGGTAATTTTTTTACTCATCGTATCTATCGATGGATATTGGTCTGAGATGGGTTTAAACAACAATCTATGGTCGATTCTGATTTGCTTGGGATTGATAGTAGTTGTTATTGTTGTATTATATTGATTTATGGATATTGGACTGAGATGGGCTTAAATGGAGCGATATCAACATTGAAGATTTATATGGTCGATTTCTATAGTAGTTATTGTTGTATTGTAATGATCGATGTAATGTAGCCTTACACTCTTGCAAGTTGTATGCATGCATGCATGCACTCAATTATGAATTTTGGTAAAGTGTAAATTTTTTAAATTTATTGTATTGATCGACGTATATTGGGT</genome_strand>
        <mrna_strand>CCTCTTGGCCAGCAAAATTGCTGCAGAACGACAACTTACAGCTGACTCTGCCATTGCTAACATTACCTGCAG.............................................................................................................................................................................................................................................................................................................................................................................................CAATTCGGTGAACATCTATATAGGCATTGGCGTACCATGGCTAATCGATACATTGTACAACTACATTGCATACAACGAGCCATTGCGAATAGAAAATGCAGAAGGACTAAGTTTCTCTCTGCTTGTTTTCTTCTCTACTTCTGTAGCCTGCATCGGTGTTTTGGTGTTTAGACGACTCACTATCGGTGCTGAGCTTGGCGGGCCAAGAGTTTGGGCATGGGTAACTTGCATATTCTTCATGTTGTTATGGCTTATATTTGTTGTGCTATCTTCTCTCAGAGTTTCTGGTATTATATAACAATCTTAGTCCAAATCATTCCTAGAAAGGGGTAATTTTTTTACTCATCGTATCTATCGATGGATATTGGTCTGAGATGGGTTTAAACAACAATCTATGGTCGATTCTGATTTGCTTGGGATTGATAGTAGTTGTTATTGTTGTATTATATTGATTTATGGATATTGGACTGAGATGGGCTTAAATGGAGCGATATCAACATTGAAGATTTATATGGTCGATTTCTATAGTAGTTATTGTTGTATTGTAATGATCGATGTAATGTAGCCTTACACTCTTGCAAGTTGTATGCATGCATGCATGCACTCAATTATGAATTTTGGTAAAGTGTAAATTTTTTAAATTTATTGTATTGATCGACGTATATTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483970" ref_strand="+" ref_description="SGN-E483970 [cSTE-11-J11]">
      <seq>tttggtccttttgggcatacatctggctgtatataattttagaggtgtggactccaaacgttgtaactttgtgggagtctatcttaacagtgttgcaatttgggctattgctgatacatgcctatgcacaggacaaacgttggccctatttgtcccttcctatagaaagagctgagaggccagaggagtgggtgcctgctgaggttgttaaatataggcctcttgacaaggttcatgagccacactcagaagtatctcaagttggcgaagaagaaaatagcggaattgttgatatattctccattcattcaggagaggggacaggtcatttttatcgaaacttagcaggtgaagatgtcactgaatcgtccacgccgaataatggcaatatcattcctgaagaatctgatatcctctcaatttggaagcatcaatttgtggatgctctcatgttggaaagtgcggaatccagaaaattgaacaatatatacctacgtgttgcaagaattttctggcagtcacttcttctaccatggaagcttctttttgcatttgtgccaccttatcagattgcccatggggtgggatgctttcatatgctctttgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="82259" stop="77454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81959" g_stop="81916" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81915" i_stop="80750" i_length="1166">
            <donor d_prob="0.850" d_score="0.98"/>
            <acceptor a_prob="0.897" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80749" g_stop="80631" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="163" r_length="119" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80630" i_stop="80165" i_length="466">
            <donor d_prob="0.876" d_score="0.98"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80164" g_stop="80004" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="324" r_length="161" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80003" i_stop="78878" i_length="1126">
            <donor d_prob="0.052" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78877" g_stop="78750" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="452" r_length="128" r_score="0.961"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78749" i_stop="77910" i_length="840">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77909" g_stop="77754" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="609" r_length="157" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E483970" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E483970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81959" e_stop="81916"/>
          <exon e_start="80749" e_stop="80631"/>
          <exon e_start="80164" e_stop="80004"/>
          <exon e_start="78877" e_stop="78750"/>
          <exon e_start="77909" e_stop="77754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGTCCTTTTGGGCCTACATCTGGCTGTATATAATTTTAGAGGTTATCTGCTCACATTTTTTTCCATGTACATATGCTTCATTAAATTCATCTATTTGGCTGACTCTTTCTTTTTGATGAGTAGTTTTGGTTTTGACTCTTAGGTAGAGGCTAGCACAAGGGGTTTTCTATGTTAATCTTTCTCTGAAAGAAGTCTTCTAGTTTGCTGTCCTTTTTTTTAATAACCGTGGTGTCTGGGCCACCTTTGAGACCTCATGTTGCTCACAACCCACTTCTAGTTTGTTCATCTTCTTTCACTGCTTTGGAAACATAAATGATATGCAGTCCTGACTAACCATCCTGGTAGCAAGGTGTGATTGATTAACTTAATTTAAGGATTATTATATTACCAAACTATTGGATGAACCTAAACCATGAAGCTGCTACTTATCAATACTTAATGCTTCTGGAAACCTATATACTGGCCTTTTTTCTCTAGTTATATCATATGGTATGACATAATCATTGAGTTCTTTGAAAATTAGAGAAAGATTATCATCGTAGTTTCTACTTGTGAAAGCTCGCTAACAAGCATAACATAGAACTTTCTTTGATGTCTTTTGTTTCATTTTTTCTTTGAATCTAATCACTAATGCCACTTTGGAACCGTACTATGCATGTTGATTAATATATAAGACATTCTAAAGACCTTTTCCTCATGTATGGAAGGGAGGACCATACAAGATATTTTGGCGAACTTGTGGATATTAATTCACTAGTTAATCATGAATAATAAAATTGTATGACCTTGAAACCCATTTTCTTCTATATCAAGACTAGGAAACTGATGATAAAATATCTTTCTAAAAAAAAAACTGATGATTATATATTGCAATTTTTCCTCATTGGTGAAATGTGAATTGTCTAGTAATGAAATAAATGTGTCTTAGGCCTCTTTCACTTCTTGACAATAAAACAAACACTCTGTTATTAACATCTTGTTTATGAACATAATTGACTTTGTAGGTGTGGAGTACAAGAGGTTTTGTATCTTTATGGGAGTCTATTTACCAGTGTTTTAATTTGAGCTATCAGATGTACCTTATTGATGAAATGTGCATGATGTGATGAGTAAAATGTAAATGTCTTAGTCCTCGTTCACTTCTTCATAGCAAAACAAGTATTCAGTTAACGATATCATATTCCTGACTATTATTTACCTTGTGTAGGTGTGGACTCCAAATGTTGTAACTTTGTGGGAGTCTATCTTAACAGTGTTGCAATTTGGGCTATTGCTGATACATGCCTATGCACAGGACAAACGTTGGCCCTATTTGTCCCTTCCTTTGTATGTCTTATGTTTATTATCATAAATTTGCAGTGTCTCCATTCTCTAGTTGAAGTTTGTTTCAGATTTTTTTTTTATTTCTGTTGAGTTTCCCACATCGCTATTAAGGGTTGGAAGATCTCTTTGTATCCTCTCTTCTTTAGCTATCATTTGGGGTTGAGTTAGGCCCCTGATCTATTTTTCTAATTCTAGAATCAGAGCTATGCCCATCCCAAATTCTTGTTTACCGATGTTGGGCCCTATATTATGTTGTCCACACTCCAGTTGTCAGGCCTGGGCGTGCGAAGGGGTATTGAGTTTCCCACATTGGTTTTAAGGGATGGGAAGGTCTCGTTATGGTCTTGGGCAATTCTCACCTCTTGATCTAGCTTTTAGGATTGAGTTAGGCCTAAGGTCCATTTTCTTTATAATTTTCTCATATGGGAAGATGATCTAATTTGTGCGTTGTATACTTTCTACCATTTAGAGAAAGAGCTGAGAGGCCAGAGGAGTGGGTGCCTGCTGAGGTTGTTAAATACAGGCCTCTTGACAAGGTTCATGAGCCACACTCGGAAGTATCTCAAGTTGGTGAAGAAGAAAATACCGGAATTGTTGATATATTCTCCATTCATTCAGGAGAGGGGACAGGTAATTTCAAGAAAGTGATGCTTTGTTTTACGGGGGATATCTAGGTCTTCCCAGTTTATGTGATACAATTTCACTAGGTACAACGTTTTGAGAGCTAATTTGAAATATGTTAATATTAGTCAGAGTAAATGAAAATAGTAAGTGATTTGAGAAGTTAGTTGATTAGAAGAGCATTATATGACAGTTATTTGAATCGTTAAATGTATTTTAGTTCTTGAAAATTCATTGTTGTATAGGATATTATTATTTGCACAAATGCATCAGATTTTGGGACTTTCAAAATTTGAGAAGTGTTTGAATGGAGGGGTTATTATAATTAGTATTAGTGTTGAGTTTGCTTCTCTTAAGGATTTGCAATATAAGTGTAGTAGAATTATAAGGTGCACTAGTTAAAAGGGGGGAACGTTATAAGTGTCGGTGTTACATGTGCAAGGAGGTGGGTGGAGGACGTGGATCATCTTATTCTATAATGTGGGTTACTATGAGGTTATGGTGGGATATGTTTAGGTGGTTTGACACTCCATGAGTAATGCCAAAAACTGTGAAGGACTTGTTGTTTGTTTGGAAGAGTGGGAGAAGGAGGAGAAGACGAAGGGCTTGGAACGTGATTCCACTTGCTTTAGTGTTGGAAGTTTTGAGAGAGAAATAGGAGAGCTTTTGAAGGAGTAGAGTCGAGTTTCTCTCAGTTGAGGAGTAGTCTCTATTCCCTTATTTTCTTTGATGCACACAAGAAGTTCCTTGTTGTATAGATGACTGGTTAGAGTTTATAGAGAATCATTTCTCTTTGTAGATTATTCTCCTTTTAGTATACATATCCCATGTTTACGACCAGTTTATGATTCTAAAGATATTTACTAGATAAAAAAAGGTGCCCCTGTAAAGAGATTTCTTGGAAAAGTTTCAAGTGAAGGGCAGAGTGCAGACAGACAGATAAGCAATTAAAATGAACAAGATAAAATTTCATTGCTGGTACATGGGAGAGTAATAAATAATGACAATTCAATGTAGTTGCATAATACAAGTAGAGATAGAATTATTGATGGTTATCAATTTGAACCATTGAGAAGAAGGATTTTATCTTCTCTCTGCAAGTAACTTTGGTCTGACAATTCTTTTGTAACAACAGGTCACTTTTATCAAAACTTAGCAGGAGAAGATGTCACTGAATCGTCCACGCCGAATAATTGCTATATCATTCCTGAAGAATCTGATATCCTCTCAATTTGGAAGCATCAATTTGTGGATGCTCTCATGGTACTGTTTTCTTATACCGTGTTCTTTATTTTATCTCAGTGGCTGAGATATTATTTTGATACAAACTGTCATGTGTATGTTTCATAGTATAAACACTTCTCACTTGCTATAGCTCCTGTGACTCCTTTGCTAAATGTGGAGCGGATAATTACTCCATTCTACTGTGCTATGTGTTTATCCTAGTTAAACCAGTTTCTTAACTAATGCCCAGTGATATCAAAAGCGAAAAGCGCAAAAAAGCTCTAAGGTCCGTTGCGGCTTTGAGCACAAAATGCAAATAATGTGTGGGCTTTAATGAAGCTAAAAGGTACAATATATATATATATATATATATATATATATATATATATATATATAATCCAAGGCTAATGATAATAAGCATGAATAACAAATGTATCGACAAAAGAATTGAAAAAAATTATTATGATAAAGAAAATATCAATTGTATACTGTCTCCTCCATAGGAAACACTCGTTGGCAAGAAAAAGTATGTCTTAATTAGAGTCTTGATGACAACACTAAAGTGCACATTAAGTGAGGCGTTTTGCACCTCACTTCAGAGCTAAAGCTTGTCTTTGACAACACCGACTTAAATTGACTTTCCAGTGATGCTGTGTTCAGTTACTACCCAATGTTCATGAACTTAAGTAGACATGAAAATGGGGTGGATATATAAAGCTCAACAGTTAGCACTACTATAATGTTGTTCATTTGATAGTTTATTCAAAATAATTTGACTCTAATTCAGACCGTTACTCTTACGAGTTACAGTAACAATCCTATCCCGTTCCACACCTTTTACTTGATGGATTAATGGGGTTTTTTTGTTAATCTTTTCAGTTGGAGAGTACAGAATCCAGAAAATTGAATAATACATACCTACGTGTAGCAAGAATTTTCTGGCAGTTGCTTCTTCTACCGTGGAAGCTTCTTTTTGCGTTTGTGCCACCGTATCAGATTGCCCAT-GGGTGGATTGCTTTCATATGTTCTTTGATA</genome_strand>
        <mrna_strand>TTTGGTCCTTTTGGGCATACATCTGGCTGTATATAATTTTAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACTCCAAACGTTGTAACTTTGTGGGAGTCTATCTTAACAGTGTTGCAATTTGGGCTATTGCTGATACATGCCTATGCACAGGACAAACGTTGGCCCTATTTGTCCCTTCCTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAGAGCTGAGAGGCCAGAGGAGTGGGTGCCTGCTGAGGTTGTTAAATATAGGCCTCTTGACAAGGTTCATGAGCCACACTCAGAAGTATCTCAAGTTGGCGAAGAAGAAAATAGCGGAATTGTTGATATATTCTCCATTCATTCAGGAGAGGGGACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTTTTATCGAAACTTAGCAGGTGAAGATGTCACTGAATCGTCCACGCCGAATAATGGCAATATCATTCCTGAAGAATCTGATATCCTCTCAATTTGGAAGCATCAATTTGTGGATGCTCTCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAAAGTGCGGAATCCAGAAAATTGAACAATATATACCTACGTGTTGCAAGAATTTTCTGGCAGTCACTTCTTCTACCATGGAAGCTTCTTTTTGCATTTGTGCCACCTTATCAGATTGCCCATGGGGTGGGATGCTTTCATATGCTCTTTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439877" ref_strand="+" ref_description="SGN-E439877 [cSTA-14-A11]">
      <seq>gttcctaaagctggagaattgaagaagatatcagatattggagtctggcttgttgagctcttttggtccttttgggcctacatctggctgtatataattttagaggtgtggactccaaatgttgtaactttgtgggagtctatcttaacagtgttgcaatttgggctattgctgatacatgcctatgcacaggacaaacgttggccctatttgtcccttcctttagaaagagctgagaggccagaggagtgggtgcctgctgaggttgttaaatacaggcctcttgacaaggttcatgagccacactcggaagtatctcaagttggtgaagaagaaaataccggaattgttgatatattctccattcattcaggagaggggacaggtcacttttatcaaaacttagcaggagaagatgtcactgaatcgtccacgccgaataattgctatatcattcctgaagaatctgatatcctctcaatttggaagcatcaatttgtggatgctctcatgttggagagtacagaatccagaaaattgaataatacatacctacgtgtagcaagaattttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="82320" stop="77548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82020" g_stop="81916" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81915" i_stop="80750" i_length="1166">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80749" g_stop="80631" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="224" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80630" i_stop="80165" i_length="466">
            <donor d_prob="0.876" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80164" g_stop="80004" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="385" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80003" i_stop="78878" i_length="1126">
            <donor d_prob="0.052" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78877" g_stop="78750" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="513" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78749" i_stop="77910" i_length="840">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77909" g_stop="77848" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="575" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E439877" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E439877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82020" e_stop="81916"/>
          <exon e_start="80749" e_stop="80631"/>
          <exon e_start="80164" e_stop="80004"/>
          <exon e_start="78877" e_stop="78750"/>
          <exon e_start="77909" e_stop="77848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCTAAAGCTGGAGAATTGAAGAAGATATCAGATATTGGAGTCTGGCTTGTTGAGCTCTTTTGGTCCTTTTGGGCCTACATCTGGCTGTATATAATTTTAGAGGTTATCTGCTCACATTTTTTTCCATGTACATATGCTTCATTAAATTCATCTATTTGGCTGACTCTTTCTTTTTGATGAGTAGTTTTGGTTTTGACTCTTAGGTAGAGGCTAGCACAAGGGGTTTTCTATGTTAATCTTTCTCTGAAAGAAGTCTTCTAGTTTGCTGTCCTTTTTTTTAATAACCGTGGTGTCTGGGCCACCTTTGAGACCTCATGTTGCTCACAACCCACTTCTAGTTTGTTCATCTTCTTTCACTGCTTTGGAAACATAAATGATATGCAGTCCTGACTAACCATCCTGGTAGCAAGGTGTGATTGATTAACTTAATTTAAGGATTATTATATTACCAAACTATTGGATGAACCTAAACCATGAAGCTGCTACTTATCAATACTTAATGCTTCTGGAAACCTATATACTGGCCTTTTTTCTCTAGTTATATCATATGGTATGACATAATCATTGAGTTCTTTGAAAATTAGAGAAAGATTATCATCGTAGTTTCTACTTGTGAAAGCTCGCTAACAAGCATAACATAGAACTTTCTTTGATGTCTTTTGTTTCATTTTTTCTTTGAATCTAATCACTAATGCCACTTTGGAACCGTACTATGCATGTTGATTAATATATAAGACATTCTAAAGACCTTTTCCTCATGTATGGAAGGGAGGACCATACAAGATATTTTGGCGAACTTGTGGATATTAATTCACTAGTTAATCATGAATAATAAAATTGTATGACCTTGAAACCCATTTTCTTCTATATCAAGACTAGGAAACTGATGATAAAATATCTTTCTAAAAAAAAAACTGATGATTATATATTGCAATTTTTCCTCATTGGTGAAATGTGAATTGTCTAGTAATGAAATAAATGTGTCTTAGGCCTCTTTCACTTCTTGACAATAAAACAAACACTCTGTTATTAACATCTTGTTTATGAACATAATTGACTTTGTAGGTGTGGAGTACAAGAGGTTTTGTATCTTTATGGGAGTCTATTTACCAGTGTTTTAATTTGAGCTATCAGATGTACCTTATTGATGAAATGTGCATGATGTGATGAGTAAAATGTAAATGTCTTAGTCCTCGTTCACTTCTTCATAGCAAAACAAGTATTCAGTTAACGATATCATATTCCTGACTATTATTTACCTTGTGTAGGTGTGGACTCCAAATGTTGTAACTTTGTGGGAGTCTATCTTAACAGTGTTGCAATTTGGGCTATTGCTGATACATGCCTATGCACAGGACAAACGTTGGCCCTATTTGTCCCTTCCTTTGTATGTCTTATGTTTATTATCATAAATTTGCAGTGTCTCCATTCTCTAGTTGAAGTTTGTTTCAGATTTTTTTTTTATTTCTGTTGAGTTTCCCACATCGCTATTAAGGGTTGGAAGATCTCTTTGTATCCTCTCTTCTTTAGCTATCATTTGGGGTTGAGTTAGGCCCCTGATCTATTTTTCTAATTCTAGAATCAGAGCTATGCCCATCCCAAATTCTTGTTTACCGATGTTGGGCCCTATATTATGTTGTCCACACTCCAGTTGTCAGGCCTGGGCGTGCGAAGGGGTATTGAGTTTCCCACATTGGTTTTAAGGGATGGGAAGGTCTCGTTATGGTCTTGGGCAATTCTCACCTCTTGATCTAGCTTTTAGGATTGAGTTAGGCCTAAGGTCCATTTTCTTTATAATTTTCTCATATGGGAAGATGATCTAATTTGTGCGTTGTATACTTTCTACCATTTAGAGAAAGAGCTGAGAGGCCAGAGGAGTGGGTGCCTGCTGAGGTTGTTAAATACAGGCCTCTTGACAAGGTTCATGAGCCACACTCGGAAGTATCTCAAGTTGGTGAAGAAGAAAATACCGGAATTGTTGATATATTCTCCATTCATTCAGGAGAGGGGACAGGTAATTTCAAGAAAGTGATGCTTTGTTTTACGGGGGATATCTAGGTCTTCCCAGTTTATGTGATACAATTTCACTAGGTACAACGTTTTGAGAGCTAATTTGAAATATGTTAATATTAGTCAGAGTAAATGAAAATAGTAAGTGATTTGAGAAGTTAGTTGATTAGAAGAGCATTATATGACAGTTATTTGAATCGTTAAATGTATTTTAGTTCTTGAAAATTCATTGTTGTATAGGATATTATTATTTGCACAAATGCATCAGATTTTGGGACTTTCAAAATTTGAGAAGTGTTTGAATGGAGGGGTTATTATAATTAGTATTAGTGTTGAGTTTGCTTCTCTTAAGGATTTGCAATATAAGTGTAGTAGAATTATAAGGTGCACTAGTTAAAAGGGGGGAACGTTATAAGTGTCGGTGTTACATGTGCAAGGAGGTGGGTGGAGGACGTGGATCATCTTATTCTATAATGTGGGTTACTATGAGGTTATGGTGGGATATGTTTAGGTGGTTTGACACTCCATGAGTAATGCCAAAAACTGTGAAGGACTTGTTGTTTGTTTGGAAGAGTGGGAGAAGGAGGAGAAGACGAAGGGCTTGGAACGTGATTCCACTTGCTTTAGTGTTGGAAGTTTTGAGAGAGAAATAGGAGAGCTTTTGAAGGAGTAGAGTCGAGTTTCTCTCAGTTGAGGAGTAGTCTCTATTCCCTTATTTTCTTTGATGCACACAAGAAGTTCCTTGTTGTATAGATGACTGGTTAGAGTTTATAGAGAATCATTTCTCTTTGTAGATTATTCTCCTTTTAGTATACATATCCCATGTTTACGACCAGTTTATGATTCTAAAGATATTTACTAGATAAAAAAAGGTGCCCCTGTAAAGAGATTTCTTGGAAAAGTTTCAAGTGAAGGGCAGAGTGCAGACAGACAGATAAGCAATTAAAATGAACAAGATAAAATTTCATTGCTGGTACATGGGAGAGTAATAAATAATGACAATTCAATGTAGTTGCATAATACAAGTAGAGATAGAATTATTGATGGTTATCAATTTGAACCATTGAGAAGAAGGATTTTATCTTCTCTCTGCAAGTAACTTTGGTCTGACAATTCTTTTGTAACAACAGGTCACTTTTATCAAAACTTAGCAGGAGAAGATGTCACTGAATCGTCCACGCCGAATAATTGCTATATCATTCCTGAAGAATCTGATATCCTCTCAATTTGGAAGCATCAATTTGTGGATGCTCTCATGGTACTGTTTTCTTATACCGTGTTCTTTATTTTATCTCAGTGGCTGAGATATTATTTTGATACAAACTGTCATGTGTATGTTTCATAGTATAAACACTTCTCACTTGCTATAGCTCCTGTGACTCCTTTGCTAAATGTGGAGCGGATAATTACTCCATTCTACTGTGCTATGTGTTTATCCTAGTTAAACCAGTTTCTTAACTAATGCCCAGTGATATCAAAAGCGAAAAGCGCAAAAAAGCTCTAAGGTCCGTTGCGGCTTTGAGCACAAAATGCAAATAATGTGTGGGCTTTAATGAAGCTAAAAGGTACAATATATATATATATATATATATATATATATATATATATATATATAATCCAAGGCTAATGATAATAAGCATGAATAACAAATGTATCGACAAAAGAATTGAAAAAAATTATTATGATAAAGAAAATATCAATTGTATACTGTCTCCTCCATAGGAAACACTCGTTGGCAAGAAAAAGTATGTCTTAATTAGAGTCTTGATGACAACACTAAAGTGCACATTAAGTGAGGCGTTTTGCACCTCACTTCAGAGCTAAAGCTTGTCTTTGACAACACCGACTTAAATTGACTTTCCAGTGATGCTGTGTTCAGTTACTACCCAATGTTCATGAACTTAAGTAGACATGAAAATGGGGTGGATATATAAAGCTCAACAGTTAGCACTACTATAATGTTGTTCATTTGATAGTTTATTCAAAATAATTTGACTCTAATTCAGACCGTTACTCTTACGAGTTACAGTAACAATCCTATCCCGTTCCACACCTTTTACTTGATGGATTAATGGGGTTTTTTTGTTAATCTTTTCAGTTGGAGAGTACAGAATCCAGAAAATTGAATAATACATACCTACGTGTAGCAAGAATTTTCTG</genome_strand>
        <mrna_strand>GTTCCTAAAGCTGGAGAATTGAAGAAGATATCAGATATTGGAGTCTGGCTTGTTGAGCTCTTTTGGTCCTTTTGGGCCTACATCTGGCTGTATATAATTTTAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGACTCCAAATGTTGTAACTTTGTGGGAGTCTATCTTAACAGTGTTGCAATTTGGGCTATTGCTGATACATGCCTATGCACAGGACAAACGTTGGCCCTATTTGTCCCTTCCTTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAGAGCTGAGAGGCCAGAGGAGTGGGTGCCTGCTGAGGTTGTTAAATACAGGCCTCTTGACAAGGTTCATGAGCCACACTCGGAAGTATCTCAAGTTGGTGAAGAAGAAAATACCGGAATTGTTGATATATTCTCCATTCATTCAGGAGAGGGGACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACTTTTATCAAAACTTAGCAGGAGAAGATGTCACTGAATCGTCCACGCCGAATAATTGCTATATCATTCCTGAAGAATCTGATATCCTCTCAATTTGGAAGCATCAATTTGTGGATGCTCTCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGAGTACAGAATCCAGAAAATTGAATAATACATACCTACGTGTAGCAAGAATTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708985" ref_strand="+" ref_description="SGN-E708985 [FA42BD05]">
      <seq>ctgtacgtcttcttcttgtatatactcaccacatttctgtaaactactatctcacaaatcagttcaagaccccatttttatccccttttttttcaatcactaaacggtacaatatggagcaaaatggatattgatagttgtatatgcctatattgtccgcatccgtccgaaagaataatctttctggggcttgaactgcgaagagaaaaatatttatcaagatgacctcgcttggaaactataccactcacagcaccaatggacattcaaatatccttagacatgaaaaatgtgatgcttatttacttttccatctagaaactgctcttggtggaggctttcgaactttcttgtattttttgggtcttgcctattgctttattggattgtcagctataactgctcggtttttccggtccatggagagtgttgtcaagcatagtcggactgtagagacgatagatcctctcacaaacacaaaagctgtcaaaaatgaaaaggtgtggaattacacaattgcagacatcactctactggcatttgggactagttttccacagatctcgctagctacaattgatgcaatacgaaatattggaaaattatatgctggaggtttaggtccgggaacactcgttggatctgctgctttcgatctatttccaatacatgctgtttgcgtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86928" stop="81722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86629" g_stop="86476" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86475" i_stop="83650" i_length="2826">
            <donor d_prob="0.296" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83649" g_stop="83189" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="615" r_length="461" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83188" i_stop="82092" i_length="1097">
            <donor d_prob="0.838" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82091" g_stop="82022" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="685" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E708985" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86629" e_stop="86476"/>
          <exon e_start="83649" e_stop="83189"/>
          <exon e_start="82091" e_stop="82022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCACGTCTTCTTCTTGTATATACTCACCACATTTCTGTAAACTACTATCTCACAAATCAGTTCAAGACCCCATTTTTATCCCCTTTTTTTTCAATCACTAAACGGTACAATATGGAGCAAAATGGATATTGATAGTTGTATATGCCTATATTGTAAGTTCCCCATCGACCCATTTGCAAATCTTGGATTTATTCTCATTTTTTCTTGTGCTCCAACAATCTTGGAATCTGTGGCACAGTGTTTTATGTGCATTTCTTTCATTTACAAGCATGAGTAAGAAAATTTGATCCCTTTTAAGCTATGTATTGAAAGTCAAACTTTTCAATTGTGTATTGTGGTTGATGACTGAGTACAAAATTTCCTTCCTTTAAAGCTATATTTTGGAAGTTAATTTTTGAATGGTTATTGAAGCTGATGGATGGGTGCTTTGTAATTGAATTTTGGATATTCGGGGTGTAGAGTAGACCTAGTTTTGTTCACTTTCTTTTTCACCTAAAATTGTGTTTCCATGTCTATTAATCATTGGTTTACTGAGCTGAAGGTCTATCGGAAACATTATCCTTAGATGTCCATTAATCATTGAAGCTATGGGCCCATGGCTAATAGTTTAAGTGTTCCCAATTCTTGAGAACTGGATTTTCTGATACTTGGAGAAAATACTTTCTTTTTCTGTATTTGGTGACCATGCTCTTAAAGACTTGCAGTCCATATAAGTGAGTTATTTAGGTGTCTATTAATCATTGAAGTAAGTTATGGGCCCATGGCTAATAGCTTAAGTTTTCCTAATTCTAGAGGATTGCATTTTCTGATGTACAGGGACCTTAAAGAAGCTTTTTTCTTTTTGTATTATCTGACCATGCTCTCTTGTAGTCTATATTAATGAATTTCCATTTTGGGTTATCATAACTTTCTTTTATTCTTGTACTCTGTAAAGACACTATTTTTATTCGTTACGCGAAATTTATAGAAGATTGGCATTTGTGTTGTAGATAGTCGAGACAATAATTGCAGTGATTATTGAACAAAGTTAACCATAGTTCTTGTAGCACTTTTTTAAGTTTTGTATCTCCTTGAATTCTTTGTGCAGTAACTTCTTTATATTCTAACTCCCTTTACTGAAAATCCTGGCCCCATCACTGCCTAGATTAGTGTATGAATGGAATTGGAAGTCTTTGGGTTGTCATGAACCTTTCACATAATTAGGACCACATGAAGGAAAAATGATGTACCAGAGAGTTCTGGTGCCCTGAAAAAAAGTTCAGTTTAGTTGTGAATTCAGATTGTTTAATTTCTTTGTGTTTGATCACCAGCAAGTTTTCTCCAGAATTGGGAAGGATAATGCATGGCAGCATTTCTGTTCTTAGAAACTAGTGGACTTGACGTTATTACGAGCATTTGCATCATAGAAATAGAACAAAATCTTCCAAAAGCCAAAAAATAATAAAGTAAAGGCAAGATTAGGGAAAAATGATAAATGTGCTGATTAATGTCATAGTTTTCTTTTCTATTACTTTGGATCATGTCTAACTCCTTTTGTTGGAGAATGCTCTATTAAACGCCATGTCAGTGTCACTTGGGTTCCAATAGTTCCTACAAACAACATGATTGAGAGAACTGATTACAGAAAGATTTATGGAGATACTCTATTCTCAAACTATTATTCTACACAACTAGTATCTTAGGAGTAATTGTTAAGGAAGGAAAATAAGTTGCTGGCAATACCCTGAATTTAAGTCTAAACTAGGAAAGTGAGGTACTGATATGATCATGAGCGGAGCTTCTAACCTATAGGGGAGAGTTTTAGGGAGTAGACACTTGAGGTGCACTAGAATTGAGATGTTGTCTGGGAGCAACTTATGTGCTGTCAATAAGACAAATATGGTTGCCAATGCCATTTCAGGAAATGTTAAATTGGGTGATATTGTGCTGGCATCATTCTTGGAGGTTTACAGATCTCTACTTCAAATGTACAAGACACGTGAACCTTGATGTTAGAATGAATGGTAGAGTCAATTGGTCAAGCACTCATTTTCATTGTGTTCCTATGCGTGGAACTTAGCTGTTTTTGGCTACATCATAGTTGTAATTGAACAAGAACTCAGAGTAATTGACTGAATTATGGCATTCATCTTTCACAAGTTGATTGTTTTGCTCATCACTCCAATGATTTGATGCTGAGCCTCATGTACTGTTAGTCCTAGGCCCAACAACCCTTGATGAGAAAGTCAACACTGGTATTTGCCTTTTATATTGGTGGGTATCTTAGGTCAGCACCGGCATAAGCCACTTTTGATATCTTATATTTAAGAATGTAAGTCGTGTCCTGGTCTACCTTATGCCTCTTCATTCTTTGGGTTAAGTTAAGCCATGTGGTCCTTTAATCAAATCGTTGTGTTATCCTGAGATCTAAGCTTGGGAGCTTCTTCTCAGAAAGCAACTGGTGTAATTTGTTAAAACCCTTCTATATTTTAATTTCTATCTGCACTACTCTCTTTCACGATGTCTAATGTCATCAATAGTAACATACCCAGTGTAATCCCACATGTGGGGTATGGTGAGGGTAGGATATAAGCAAACCTTATACCACAATTTCATCATACACTTGAATTGATTAATGATATGTTGAGGAAGGAAAATTCATGCTTGTCTCTGTTGGTGCCAAAATGATTGCTCTTGTACAATTAACTTAGAAATCAATCCGAGTGATATAATGGCTTTCTTATGTAATTGGACATGCTTTATTTTATAGTATTAAAACTTCATGATGCACATGTTTGTGCTACATCTGTCCCCTTGCGCACTGACTTAGTACACGGGTTTTTGTGGCCTGAAGTACAAAAGAAACTCTTGGGGATCTTTTTGTATATATATGGTGCTATGTATTCTTCAGAGTGCTACTATTGTTGCTTGATGTAATGAGAACTGTATTAAGATTGTCATTAGACTTTAATTATCAACAACTGTTGCACAAATGGCAGGTCCGCATCCGTCCGAAAGAATAATCTTTCTGGGGCTTGAACTGCGAAGAGAAAAATATTTATCAAGATGACCTCGCTTGGAAACTATACCACTCACAGCACCAATGGACATTCAAATATCCTTAGACATGAAAAATGTGATGCTTATTTACTTTTCCATCTAGAAACTGCTCTTGGTGGAGGCTTTCGAACTTTCTTGTATTTTTTGGGTCTTGCCTATTGCTTTATTGGATTGTCAGCTATAACTGCTCGGTTTTTCCGGTCCATGGAGAGTGTTGTCAAGCATAGTCGGACTGTAGAGACGATAGATCCTCTCACAAACACAAAAGCTGTCAAAAATGAAAAGGTGTGGAATTACACAATTGCAGACATCACTCTACTGGCATTTGGGACTAGTTTTCCACAGATCTCGCTAGCTACAATTGATGCAATACGAAATATTGGAAAATTATATGCTGGAGGTCTGTTGAGGATTTTCTTCTCTGCATTCAGAATCTTGACTTAGTTGGTGTTATAATTTTTCTTCTTATTCATAATACGACGTAAGAAAGCGTGGCATCAAATTTTCAGATTCCTCTCTTCTTCATAATTTTTGTTTGTGTTACAATTTTTCCTTTGTTGAGGTTTGCCATATAATTATATGCTCCTTTAAAAAAGCATGACATCAAACTTTCAGTTTCCTCTTCTCCTATTTTTTAAATGTAGCTAGCCAAACTTTTCTAGTTGTAATGAATACTAAAGTGAGCCATTGATGTGTGTGTTTTTAGACTGTCTTGTGATGTCTGGGAAAGATGCACTCTGAGAGATATTTGTCCCCACTTATTGTGCTTGTGGTGATCTCATCTTGGACATTGTTGAGTGAAGGAGGCGAATAAATGACAAGCCACAACTACAAGATGTCAGGAAGTATTCCTCACCAATGATGTCCCTACACTCTCCCGCCCTCTGTTAAGGAACCTTAAGACTTGACAATGAAATAGTTGACCTTCTAATGATTTTATCTTGAGTAACTCTCAATATGATTGAGTTCAGTATGGATATTGATTTTTACAGAGTAGATTAGACCTTTCTCTTTTAATAATTTTCTTGTGCTTATATTAGTGGTTACCTGTTAATATGTTCTTCACCCCATGATGTTAGTCTCTGAAGTCATGGAGTAAAAATATATTCCATTTTGACCATTAAAATAGAAAACACCAAATATTAATGTCTGCAGCCTGCGAATGACAATGAGTTACTGGAACCTTAAGAGATGCTGAGATAATGACTATGAAATCAATAGTTGATTGGTTAATATTTATATAAAAAAAATTTACATGTTGATATACTTTATATTATGGCCAGTATTATATATAGTTCCATGAGTTATCTTTTCCCTTTTCTTTTCTCTTTTAAGAAGATAGAATGTGAAAATCTAATTTCTATTGGAAAAATTTGCTCGTACCTGTTAGAACATTTATGTATAATGTATCATTTCTACTAGATACCAGAAAATTTTCTGAATCATGGACATCCGTTGTCTTGCTAATACACCCTTGCTACAATTTGACTTGTCCAGGTTTAGGTCCGGGAACACTCGTTGGATCTGCTGCTTTCGATCTATTTCCAATACATGCTGTTTGCGTGGT</genome_strand>
        <mrna_strand>CTGTACGTCTTCTTCTTGTATATACTCACCACATTTCTGTAAACTACTATCTCACAAATCAGTTCAAGACCCCATTTTTATCCCCTTTTTTTTCAATCACTAAACGGTACAATATGGAGCAAAATGGATATTGATAGTTGTATATGCCTATATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGCATCCGTCCGAAAGAATAATCTTTCTGGGGCTTGAACTGCGAAGAGAAAAATATTTATCAAGATGACCTCGCTTGGAAACTATACCACTCACAGCACCAATGGACATTCAAATATCCTTAGACATGAAAAATGTGATGCTTATTTACTTTTCCATCTAGAAACTGCTCTTGGTGGAGGCTTTCGAACTTTCTTGTATTTTTTGGGTCTTGCCTATTGCTTTATTGGATTGTCAGCTATAACTGCTCGGTTTTTCCGGTCCATGGAGAGTGTTGTCAAGCATAGTCGGACTGTAGAGACGATAGATCCTCTCACAAACACAAAAGCTGTCAAAAATGAAAAGGTGTGGAATTACACAATTGCAGACATCACTCTACTGGCATTTGGGACTAGTTTTCCACAGATCTCGCTAGCTACAATTGATGCAATACGAAATATTGGAAAATTATATGCTGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAGGTCCGGGAACACTCGTTGGATCTGCTGCTTTCGATCTATTTCCAATACATGCTGTTTGCGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314699" ref_strand="+" ref_description="SGN-E314699 [cTOA-20-E13]">
      <seq>tcactccatgcacgtcttcttcttgtatatactcaccacatttctgtaaactactatctcacaaatcagttcaagaccccatttttatccccttttttttcaatcactaaacggtacaatatggagcaaaatggatattgatagttgtatatgcctatattgtccgcatccgtccgaaagaataatctttctggggcttgaactgcgaagagaaaaatatttatcaagatgacctcgcttggaaactataccactcacagcaccaatggacattcaaatatccttagacatgaaaaatgtgatgcttatttacttttccatctagaaactgctcttggtggaggctttcgaactttcttgtattttttgggtcttgcctattgctttattggattgtcagctataactgctcggtttttccggtccatggagagtgttgtcaagcatagtcggactgtagagacgatagatcctctcacaaacacaaaagctgtcaaaaatgaaaaggtgtggaattacacaattgcagacatcactctactggcatttgggactagtttttcacagatctcgctagctacnattgatgcaatacgaaatattggaaaattatatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86936" stop="82892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86636" g_stop="86476" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86475" i_stop="83650" i_length="2826">
            <donor d_prob="0.296" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83649" g_stop="83192" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="619" r_length="458" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E314699" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86636" e_stop="86476"/>
          <exon e_start="83649" e_stop="83192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTCCATGCACGTCTTCTTCTTGTATATACTCACCACATTTCTGTAAACTACTATCTCACAAATCAGTTCAAGACCCCATTTTTATCCCCTTTTTTTTCAATCACTAAACGGTACAATATGGAGCAAAATGGATATTGATAGTTGTATATGCCTATATTGTAAGTTCCCCATCGACCCATTTGCAAATCTTGGATTTATTCTCATTTTTTCTTGTGCTCCAACAATCTTGGAATCTGTGGCACAGTGTTTTATGTGCATTTCTTTCATTTACAAGCATGAGTAAGAAAATTTGATCCCTTTTAAGCTATGTATTGAAAGTCAAACTTTTCAATTGTGTATTGTGGTTGATGACTGAGTACAAAATTTCCTTCCTTTAAAGCTATATTTTGGAAGTTAATTTTTGAATGGTTATTGAAGCTGATGGATGGGTGCTTTGTAATTGAATTTTGGATATTCGGGGTGTAGAGTAGACCTAGTTTTGTTCACTTTCTTTTTCACCTAAAATTGTGTTTCCATGTCTATTAATCATTGGTTTACTGAGCTGAAGGTCTATCGGAAACATTATCCTTAGATGTCCATTAATCATTGAAGCTATGGGCCCATGGCTAATAGTTTAAGTGTTCCCAATTCTTGAGAACTGGATTTTCTGATACTTGGAGAAAATACTTTCTTTTTCTGTATTTGGTGACCATGCTCTTAAAGACTTGCAGTCCATATAAGTGAGTTATTTAGGTGTCTATTAATCATTGAAGTAAGTTATGGGCCCATGGCTAATAGCTTAAGTTTTCCTAATTCTAGAGGATTGCATTTTCTGATGTACAGGGACCTTAAAGAAGCTTTTTTCTTTTTGTATTATCTGACCATGCTCTCTTGTAGTCTATATTAATGAATTTCCATTTTGGGTTATCATAACTTTCTTTTATTCTTGTACTCTGTAAAGACACTATTTTTATTCGTTACGCGAAATTTATAGAAGATTGGCATTTGTGTTGTAGATAGTCGAGACAATAATTGCAGTGATTATTGAACAAAGTTAACCATAGTTCTTGTAGCACTTTTTTAAGTTTTGTATCTCCTTGAATTCTTTGTGCAGTAACTTCTTTATATTCTAACTCCCTTTACTGAAAATCCTGGCCCCATCACTGCCTAGATTAGTGTATGAATGGAATTGGAAGTCTTTGGGTTGTCATGAACCTTTCACATAATTAGGACCACATGAAGGAAAAATGATGTACCAGAGAGTTCTGGTGCCCTGAAAAAAAGTTCAGTTTAGTTGTGAATTCAGATTGTTTAATTTCTTTGTGTTTGATCACCAGCAAGTTTTCTCCAGAATTGGGAAGGATAATGCATGGCAGCATTTCTGTTCTTAGAAACTAGTGGACTTGACGTTATTACGAGCATTTGCATCATAGAAATAGAACAAAATCTTCCAAAAGCCAAAAAATAATAAAGTAAAGGCAAGATTAGGGAAAAATGATAAATGTGCTGATTAATGTCATAGTTTTCTTTTCTATTACTTTGGATCATGTCTAACTCCTTTTGTTGGAGAATGCTCTATTAAACGCCATGTCAGTGTCACTTGGGTTCCAATAGTTCCTACAAACAACATGATTGAGAGAACTGATTACAGAAAGATTTATGGAGATACTCTATTCTCAAACTATTATTCTACACAACTAGTATCTTAGGAGTAATTGTTAAGGAAGGAAAATAAGTTGCTGGCAATACCCTGAATTTAAGTCTAAACTAGGAAAGTGAGGTACTGATATGATCATGAGCGGAGCTTCTAACCTATAGGGGAGAGTTTTAGGGAGTAGACACTTGAGGTGCACTAGAATTGAGATGTTGTCTGGGAGCAACTTATGTGCTGTCAATAAGACAAATATGGTTGCCAATGCCATTTCAGGAAATGTTAAATTGGGTGATATTGTGCTGGCATCATTCTTGGAGGTTTACAGATCTCTACTTCAAATGTACAAGACACGTGAACCTTGATGTTAGAATGAATGGTAGAGTCAATTGGTCAAGCACTCATTTTCATTGTGTTCCTATGCGTGGAACTTAGCTGTTTTTGGCTACATCATAGTTGTAATTGAACAAGAACTCAGAGTAATTGACTGAATTATGGCATTCATCTTTCACAAGTTGATTGTTTTGCTCATCACTCCAATGATTTGATGCTGAGCCTCATGTACTGTTAGTCCTAGGCCCAACAACCCTTGATGAGAAAGTCAACACTGGTATTTGCCTTTTATATTGGTGGGTATCTTAGGTCAGCACCGGCATAAGCCACTTTTGATATCTTATATTTAAGAATGTAAGTCGTGTCCTGGTCTACCTTATGCCTCTTCATTCTTTGGGTTAAGTTAAGCCATGTGGTCCTTTAATCAAATCGTTGTGTTATCCTGAGATCTAAGCTTGGGAGCTTCTTCTCAGAAAGCAACTGGTGTAATTTGTTAAAACCCTTCTATATTTTAATTTCTATCTGCACTACTCTCTTTCACGATGTCTAATGTCATCAATAGTAACATACCCAGTGTAATCCCACATGTGGGGTATGGTGAGGGTAGGATATAAGCAAACCTTATACCACAATTTCATCATACACTTGAATTGATTAATGATATGTTGAGGAAGGAAAATTCATGCTTGTCTCTGTTGGTGCCAAAATGATTGCTCTTGTACAATTAACTTAGAAATCAATCCGAGTGATATAATGGCTTTCTTATGTAATTGGACATGCTTTATTTTATAGTATTAAAACTTCATGATGCACATGTTTGTGCTACATCTGTCCCCTTGCGCACTGACTTAGTACACGGGTTTTTGTGGCCTGAAGTACAAAAGAAACTCTTGGGGATCTTTTTGTATATATATGGTGCTATGTATTCTTCAGAGTGCTACTATTGTTGCTTGATGTAATGAGAACTGTATTAAGATTGTCATTAGACTTTAATTATCAACAACTGTTGCACAAATGGCAGGTCCGCATCCGTCCGAAAGAATAATCTTTCTGGGGCTTGAACTGCGAAGAGAAAAATATTTATCAAGATGACCTCGCTTGGAAACTATACCACTCACAGCACCAATGGACATTCAAATATCCTTAGACATGAAAAATGTGATGCTTATTTACTTTTCCATCTAGAAACTGCTCTTGGTGGAGGCTTTCGAACTTTCTTGTATTTTTTGGGTCTTGCCTATTGCTTTATTGGATTGTCAGCTATAACTGCTCGGTTTTTCCGGTCCATGGAGAGTGTTGTCAAGCATAGTCGGACTGTAGAGACGATAGATCCTCTCACAAACACAAAAGCTGTCAAAAATGAAAAGGTGTGGAATTACACAATTGCAGACATCACTCTACTGGCATTTGGGACTAGTTTTCCACAGATCTCGCTAGCTACAATTGATGCAATACGAAATATTGGAAAATTATATGCTG</genome_strand>
        <mrna_strand>TCACTCCATGCACGTCTTCTTCTTGTATATACTCACCACATTTCTGTAAACTACTATCTCACAAATCAGTTCAAGACCCCATTTTTATCCCCTTTTTTTTCAATCACTAAACGGTACAATATGGAGCAAAATGGATATTGATAGTTGTATATGCCTATATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGCATCCGTCCGAAAGAATAATCTTTCTGGGGCTTGAACTGCGAAGAGAAAAATATTTATCAAGATGACCTCGCTTGGAAACTATACCACTCACAGCACCAATGGACATTCAAATATCCTTAGACATGAAAAATGTGATGCTTATTTACTTTTCCATCTAGAAACTGCTCTTGGTGGAGGCTTTCGAACTTTCTTGTATTTTTTGGGTCTTGCCTATTGCTTTATTGGATTGTCAGCTATAACTGCTCGGTTTTTCCGGTCCATGGAGAGTGTTGTCAAGCATAGTCGGACTGTAGAGACGATAGATCCTCTCACAAACACAAAAGCTGTCAAAAATGAAAAGGTGTGGAATTACACAATTGCAGACATCACTCTACTGGCATTTGGGACTAGTTTTTCACAGATCTCGCTAGCTACNATTGATGCAATACGAAATATTGGAAAATTATATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358841" ref_strand="+" ref_description="SGN-E358841 [cLHT-24-H20]">
      <seq>gtttttggaaatagcaagttgaagttcctattcgatctcaattacaagcaatagtccggtggtgctcactccatgcacgtctccttcttgtatattctcaccacatttctgtaaactactatctcacaaatcagttcaagaccccatttttatccctttttttcaatcaataaactgcacaatatggagcaaaatggatattgatagttgtatatgcctatattgtccgcatccgtccgaaagaataatctttctggggcttgaactgtgaagagaaaaatatttatcatgacctcgctgggaaactataccactgacagcaccaatggacattcaaatatccttagacatgaaaaatgtgatgcttatttacttttccatctagaaactgctcttggtgaaggctttcgaactttcttgtatattttgggtcttgcctattgctttattggattgtcagctataactgctcggtttttccggtccatggagagtgttgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86990" stop="83069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86680" g_stop="86476" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="224" r_length="203" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86475" i_stop="83650" i_length="2826">
            <donor d_prob="0.296" d_score="0.96"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83649" g_stop="83369" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="502" r_length="278" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E358841" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86680" e_stop="86476"/>
          <exon e_start="83649" e_stop="83369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCCCTATTCGATCTCAATTACAAGCAATAGTCCGGTGGTGCTCACTCCATGCACGTCTTCTTCTTGTATATACTCACCACATTTCTGTAAACTACTATCTCACAAATCAGTTCAAGACCCCATTTTTATCCCCTTTTTTTTCAATCACTAAACGGTACAATATGGAGCAAAATGGATATTGATAGTTGTATATGCCTATATTGTAAGTTCCCCATCGACCCATTTGCAAATCTTGGATTTATTCTCATTTTTTCTTGTGCTCCAACAATCTTGGAATCTGTGGCACAGTGTTTTATGTGCATTTCTTTCATTTACAAGCATGAGTAAGAAAATTTGATCCCTTTTAAGCTATGTATTGAAAGTCAAACTTTTCAATTGTGTATTGTGGTTGATGACTGAGTACAAAATTTCCTTCCTTTAAAGCTATATTTTGGAAGTTAATTTTTGAATGGTTATTGAAGCTGATGGATGGGTGCTTTGTAATTGAATTTTGGATATTCGGGGTGTAGAGTAGACCTAGTTTTGTTCACTTTCTTTTTCACCTAAAATTGTGTTTCCATGTCTATTAATCATTGGTTTACTGAGCTGAAGGTCTATCGGAAACATTATCCTTAGATGTCCATTAATCATTGAAGCTATGGGCCCATGGCTAATAGTTTAAGTGTTCCCAATTCTTGAGAACTGGATTTTCTGATACTTGGAGAAAATACTTTCTTTTTCTGTATTTGGTGACCATGCTCTTAAAGACTTGCAGTCCATATAAGTGAGTTATTTAGGTGTCTATTAATCATTGAAGTAAGTTATGGGCCCATGGCTAATAGCTTAAGTTTTCCTAATTCTAGAGGATTGCATTTTCTGATGTACAGGGACCTTAAAGAAGCTTTTTTCTTTTTGTATTATCTGACCATGCTCTCTTGTAGTCTATATTAATGAATTTCCATTTTGGGTTATCATAACTTTCTTTTATTCTTGTACTCTGTAAAGACACTATTTTTATTCGTTACGCGAAATTTATAGAAGATTGGCATTTGTGTTGTAGATAGTCGAGACAATAATTGCAGTGATTATTGAACAAAGTTAACCATAGTTCTTGTAGCACTTTTTTAAGTTTTGTATCTCCTTGAATTCTTTGTGCAGTAACTTCTTTATATTCTAACTCCCTTTACTGAAAATCCTGGCCCCATCACTGCCTAGATTAGTGTATGAATGGAATTGGAAGTCTTTGGGTTGTCATGAACCTTTCACATAATTAGGACCACATGAAGGAAAAATGATGTACCAGAGAGTTCTGGTGCCCTGAAAAAAAGTTCAGTTTAGTTGTGAATTCAGATTGTTTAATTTCTTTGTGTTTGATCACCAGCAAGTTTTCTCCAGAATTGGGAAGGATAATGCATGGCAGCATTTCTGTTCTTAGAAACTAGTGGACTTGACGTTATTACGAGCATTTGCATCATAGAAATAGAACAAAATCTTCCAAAAGCCAAAAAATAATAAAGTAAAGGCAAGATTAGGGAAAAATGATAAATGTGCTGATTAATGTCATAGTTTTCTTTTCTATTACTTTGGATCATGTCTAACTCCTTTTGTTGGAGAATGCTCTATTAAACGCCATGTCAGTGTCACTTGGGTTCCAATAGTTCCTACAAACAACATGATTGAGAGAACTGATTACAGAAAGATTTATGGAGATACTCTATTCTCAAACTATTATTCTACACAACTAGTATCTTAGGAGTAATTGTTAAGGAAGGAAAATAAGTTGCTGGCAATACCCTGAATTTAAGTCTAAACTAGGAAAGTGAGGTACTGATATGATCATGAGCGGAGCTTCTAACCTATAGGGGAGAGTTTTAGGGAGTAGACACTTGAGGTGCACTAGAATTGAGATGTTGTCTGGGAGCAACTTATGTGCTGTCAATAAGACAAATATGGTTGCCAATGCCATTTCAGGAAATGTTAAATTGGGTGATATTGTGCTGGCATCATTCTTGGAGGTTTACAGATCTCTACTTCAAATGTACAAGACACGTGAACCTTGATGTTAGAATGAATGGTAGAGTCAATTGGTCAAGCACTCATTTTCATTGTGTTCCTATGCGTGGAACTTAGCTGTTTTTGGCTACATCATAGTTGTAATTGAACAAGAACTCAGAGTAATTGACTGAATTATGGCATTCATCTTTCACAAGTTGATTGTTTTGCTCATCACTCCAATGATTTGATGCTGAGCCTCATGTACTGTTAGTCCTAGGCCCAACAACCCTTGATGAGAAAGTCAACACTGGTATTTGCCTTTTATATTGGTGGGTATCTTAGGTCAGCACCGGCATAAGCCACTTTTGATATCTTATATTTAAGAATGTAAGTCGTGTCCTGGTCTACCTTATGCCTCTTCATTCTTTGGGTTAAGTTAAGCCATGTGGTCCTTTAATCAAATCGTTGTGTTATCCTGAGATCTAAGCTTGGGAGCTTCTTCTCAGAAAGCAACTGGTGTAATTTGTTAAAACCCTTCTATATTTTAATTTCTATCTGCACTACTCTCTTTCACGATGTCTAATGTCATCAATAGTAACATACCCAGTGTAATCCCACATGTGGGGTATGGTGAGGGTAGGATATAAGCAAACCTTATACCACAATTTCATCATACACTTGAATTGATTAATGATATGTTGAGGAAGGAAAATTCATGCTTGTCTCTGTTGGTGCCAAAATGATTGCTCTTGTACAATTAACTTAGAAATCAATCCGAGTGATATAATGGCTTTCTTATGTAATTGGACATGCTTTATTTTATAGTATTAAAACTTCATGATGCACATGTTTGTGCTACATCTGTCCCCTTGCGCACTGACTTAGTACACGGGTTTTTGTGGCCTGAAGTACAAAAGAAACTCTTGGGGATCTTTTTGTATATATATGGTGCTATGTATTCTTCAGAGTGCTACTATTGTTGCTTGATGTAATGAGAACTGTATTAAGATTGTCATTAGACTTTAATTATCAACAACTGTTGCACAAATGGCAGGTCCGCATCCGTCCGAAAGAATAATCTTTCTGGGGCTTGAACTGCGAAGAGAAAAATATTTATCAAGATGACCTCGCTTGGAAACTATACCACTCACAGCACCAATGGACATTCAAATATCCTTAGACATGAAAAATGTGATGCTTATTTACTTTTCCATCTAGAAACTGCTCTTGGTGGAGGCTTTCGAACTTTCTTGTATTTTTTGGGTCTTGCCTATTGCTTTATTGGATTGTCAGCTATAACTGCTCGGTTTTTCCGGTCCATGGAGAGTGTTGTCA</genome_strand>
        <mrna_strand>AAGTTCCTATTCGATCTCAATTACAAGCAATAGTCCGGTGGTGCTCACTCCATGCACGTCTCCTTCTTGTATATTCTCACCACATTTCTGTAAACTACTATCTCACAAATCAGTTCAAGACCCCATTTTTAT-CCC-TTTTTTTCAATCAATAAACTGCACAATATGGAGCAAAATGGATATTGATAGTTGTATATGCCTATATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGCATCCGTCCGAAAGAATAATCTTTCTGGGGCTTGAACTGTGAAGAGAAAAATATTTATC---ATGACCTCGCTGGGAAACTATACCACTGACAGCACCAATGGACATTCAAATATCCTTAGACATGAAAAATGTGATGCTTATTTACTTTTCCATCTAGAAACTGCTCTTGGTGAAGGCTTTCGAACTTTCTTGTATATTTTGGGTCTTGCCTATTGCTTTATTGGATTGTCAGCTATAACTGCTCGGTTTTTCCGGTCCATGGAGAGTGTTGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438225" ref_strand="+" ref_description="SGN-E438225 [cSTA-6-L5]">
      <seq>tacaagcaataatccggtggtgctcactccatgcacgtctccttcttgtatattcccaccacatttctgtaaactgctattcacaaattagttcaagaccctatttttattccttttttccaatcacaaagcggtccaatatggagcaaaatggatatcgatagtcgtatatgcctatttggtccgcatccgtccgaaagaataatctttctggggcttgaactgtgaagggaaaaatatttatcaagatgacctcgctggggaactataccactgacagcaccaatggacattcaaatatccttagacatgaaaaatgtgatgcttatttacttatccatctagaaactgctcttggtgaaggctttcgaactttcttgtattttttgggtcttgcctattgctttattggattgtcagctataactgctcggtttttccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86959" stop="83089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86659" g_stop="86476" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86475" i_stop="83650" i_length="2826">
            <donor d_prob="0.296" d_score="0.90"/>
            <acceptor a_prob="0.977" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83649" g_stop="83389" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="442" r_length="261" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E438225" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E438225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86659" e_stop="86476"/>
          <exon e_start="83649" e_stop="83389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAGCAATAGTCCGGTGGTGCTCACTCCATGCACGTCTTCTTCTTGTATATACTCACCACATTTCTGTAAACTACTATCTCACAAATCAGTTCAAGACCCCATTTTTATCCCCTTTTTTTTCAATCACTAAACGGTACAATATGGAGCAAAATGGATATTGATAGTTGTATATGCCTATATTGTAAGTTCCCCATCGACCCATTTGCAAATCTTGGATTTATTCTCATTTTTTCTTGTGCTCCAACAATCTTGGAATCTGTGGCACAGTGTTTTATGTGCATTTCTTTCATTTACAAGCATGAGTAAGAAAATTTGATCCCTTTTAAGCTATGTATTGAAAGTCAAACTTTTCAATTGTGTATTGTGGTTGATGACTGAGTACAAAATTTCCTTCCTTTAAAGCTATATTTTGGAAGTTAATTTTTGAATGGTTATTGAAGCTGATGGATGGGTGCTTTGTAATTGAATTTTGGATATTCGGGGTGTAGAGTAGACCTAGTTTTGTTCACTTTCTTTTTCACCTAAAATTGTGTTTCCATGTCTATTAATCATTGGTTTACTGAGCTGAAGGTCTATCGGAAACATTATCCTTAGATGTCCATTAATCATTGAAGCTATGGGCCCATGGCTAATAGTTTAAGTGTTCCCAATTCTTGAGAACTGGATTTTCTGATACTTGGAGAAAATACTTTCTTTTTCTGTATTTGGTGACCATGCTCTTAAAGACTTGCAGTCCATATAAGTGAGTTATTTAGGTGTCTATTAATCATTGAAGTAAGTTATGGGCCCATGGCTAATAGCTTAAGTTTTCCTAATTCTAGAGGATTGCATTTTCTGATGTACAGGGACCTTAAAGAAGCTTTTTTCTTTTTGTATTATCTGACCATGCTCTCTTGTAGTCTATATTAATGAATTTCCATTTTGGGTTATCATAACTTTCTTTTATTCTTGTACTCTGTAAAGACACTATTTTTATTCGTTACGCGAAATTTATAGAAGATTGGCATTTGTGTTGTAGATAGTCGAGACAATAATTGCAGTGATTATTGAACAAAGTTAACCATAGTTCTTGTAGCACTTTTTTAAGTTTTGTATCTCCTTGAATTCTTTGTGCAGTAACTTCTTTATATTCTAACTCCCTTTACTGAAAATCCTGGCCCCATCACTGCCTAGATTAGTGTATGAATGGAATTGGAAGTCTTTGGGTTGTCATGAACCTTTCACATAATTAGGACCACATGAAGGAAAAATGATGTACCAGAGAGTTCTGGTGCCCTGAAAAAAAGTTCAGTTTAGTTGTGAATTCAGATTGTTTAATTTCTTTGTGTTTGATCACCAGCAAGTTTTCTCCAGAATTGGGAAGGATAATGCATGGCAGCATTTCTGTTCTTAGAAACTAGTGGACTTGACGTTATTACGAGCATTTGCATCATAGAAATAGAACAAAATCTTCCAAAAGCCAAAAAATAATAAAGTAAAGGCAAGATTAGGGAAAAATGATAAATGTGCTGATTAATGTCATAGTTTTCTTTTCTATTACTTTGGATCATGTCTAACTCCTTTTGTTGGAGAATGCTCTATTAAACGCCATGTCAGTGTCACTTGGGTTCCAATAGTTCCTACAAACAACATGATTGAGAGAACTGATTACAGAAAGATTTATGGAGATACTCTATTCTCAAACTATTATTCTACACAACTAGTATCTTAGGAGTAATTGTTAAGGAAGGAAAATAAGTTGCTGGCAATACCCTGAATTTAAGTCTAAACTAGGAAAGTGAGGTACTGATATGATCATGAGCGGAGCTTCTAACCTATAGGGGAGAGTTTTAGGGAGTAGACACTTGAGGTGCACTAGAATTGAGATGTTGTCTGGGAGCAACTTATGTGCTGTCAATAAGACAAATATGGTTGCCAATGCCATTTCAGGAAATGTTAAATTGGGTGATATTGTGCTGGCATCATTCTTGGAGGTTTACAGATCTCTACTTCAAATGTACAAGACACGTGAACCTTGATGTTAGAATGAATGGTAGAGTCAATTGGTCAAGCACTCATTTTCATTGTGTTCCTATGCGTGGAACTTAGCTGTTTTTGGCTACATCATAGTTGTAATTGAACAAGAACTCAGAGTAATTGACTGAATTATGGCATTCATCTTTCACAAGTTGATTGTTTTGCTCATCACTCCAATGATTTGATGCTGAGCCTCATGTACTGTTAGTCCTAGGCCCAACAACCCTTGATGAGAAAGTCAACACTGGTATTTGCCTTTTATATTGGTGGGTATCTTAGGTCAGCACCGGCATAAGCCACTTTTGATATCTTATATTTAAGAATGTAAGTCGTGTCCTGGTCTACCTTATGCCTCTTCATTCTTTGGGTTAAGTTAAGCCATGTGGTCCTTTAATCAAATCGTTGTGTTATCCTGAGATCTAAGCTTGGGAGCTTCTTCTCAGAAAGCAACTGGTGTAATTTGTTAAAACCCTTCTATATTTTAATTTCTATCTGCACTACTCTCTTTCACGATGTCTAATGTCATCAATAGTAACATACCCAGTGTAATCCCACATGTGGGGTATGGTGAGGGTAGGATATAAGCAAACCTTATACCACAATTTCATCATACACTTGAATTGATTAATGATATGTTGAGGAAGGAAAATTCATGCTTGTCTCTGTTGGTGCCAAAATGATTGCTCTTGTACAATTAACTTAGAAATCAATCCGAGTGATATAATGGCTTTCTTATGTAATTGGACATGCTTTATTTTATAGTATTAAAACTTCATGATGCACATGTTTGTGCTACATCTGTCCCCTTGCGCACTGACTTAGTACACGGGTTTTTGTGGCCTGAAGTACAAAAGAAACTCTTGGGGATCTTTTTGTATATATATGGTGCTATGTATTCTTCAGAGTGCTACTATTGTTGCTTGATGTAATGAGAACTGTATTAAGATTGTCATTAGACTTTAATTATCAACAACTGTTGCACAAATGGCAGGTCCGCATCCGTCCGAAAGAATAATCTTTCTGGGGCTTGAACTGCGAAGAGAAAAATATTTATCAAGATGACCTCGCTTGGAAACTATACCACTCACAGCACCAATGGACATTCAAATATCCTTAGACATGAAAAATGTGATGCTTATTTACTTTTCCATCTAGAAACTGCTCTTGGTGGAGGCTTTCGAACTTTCTTGTATTTTTTGGGTCTTGCCTATTGCTTTATTGGATTGTCAGCTATAACTGCTCGGTTTTTCCG</genome_strand>
        <mrna_strand>TACAAGCAATAATCCGGTGGTGCTCACTCCATGCACGTCTCCTTCTTGTATATTCCCACCACATTTCTGTAAACTGCTAT-TCACAAATTAGTTCAAGACCCTATTTTTAT-TCC-TTTTTTCCAATCACAAAGCGGTCCAATATGGAGCAAAATGGATATCGATAGTCGTATATGCCTATTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGCATCCGTCCGAAAGAATAATCTTTCTGGGGCTTGAACTGTGAAGGGAAAAATATTTATCAAGATGACCTCGCTGGGGAACTATACCACTGACAGCACCAATGGACATTCAAATATCCTTAGACATGAAAAATGTGATGCTTATTTACTTATCCATCTAGAAACTGCTCTTGGTGAAGGCTTTCGAACTTTCTTGTATTTTTTGGGTCTTGCCTATTGCTTTATTGGATTGTCAGCTATAACTGCTCGGTTTTTCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745887" ref_strand="+" ref_description="SGN-E745887 [GI|47105515]">
      <seq>gagtggcgatcttttttgattttgagaatagtaccccaaatatccatagatacttgtcgacaattttgcttaatcgccattgatttcaaagatccagatcttgttcttcattgataatttaagctgtttatagatgaattgaggtgaatttgagcagatttgaactccattgtagggtgttttcatgaagtttcaatgtcgcctaagactctagattcacgtcacgccattgaatcgtgtacgtatcatctccattcttggaaaccctttcagtttccgtctccgaattctaaaaccctagatttagattcgccaaaaacttactccccgtcgacccatggtgggctgcatacgaagcgtcaatgtagagcggatcgaacaacttcgattccaattgaagctcttgatatgtcaaagttaagtttatttgaggaggataagcctttatcggttcataaacgggagaatcttaggttgatagctggtaagaggcggagacgtgggtctcgttcggtttccgggaggagtagtgatcggagtggaactagaagacggtgttgctcggttggagcttcagcagcttatgggacttgttcggattttcctgttgctgcggggactgattcaagtggggaattgttcgtgaatggggatatgcattggactttggatgttagtgaggttacaaagagtttaaggaaggagaaggaaggtggtggggttggtgaaagagagaataatttaaatggtttgtctgtgcaaagtgggagttttgaggggttgggtaatgagtcagggtatgggagtgaaccggggtatcgtggtgatgcagagtttggatatggtgatgagtttgatgaagaagaagatgatcaacggctttccttctggggcgatgaatttggagcactctctaggatggagaaagttggagagaactcgttgcagaaggtgcaccatagatgtcggcggaggaaacaagattgtcgaatggtgatcccttgaggtttgctgatgttgatgagtgtgattgatagccggttccaagattttgccagtgatacaatcgtgtaattcatgagcagaacctttttgggtttgaatacagaatctgctgctgtaaatatgaacaaatgatgttaattgttcatgtcttattgtcatggtacccctgatgttcaccatggtatgttttggttggggattagacaagttagtatattgtactatttaaggggtcgtttgatagtgtgtaagagtagcgttgaatattgtgtattagtaatactgtgattatcttttgttgtgttctatttcttttggtatattaaacataacatgttttgcctacaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="91891" stop="87544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91592" g_stop="90686" g_length="907"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="907" r_length="907" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90685" i_stop="88287" i_length="2399">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88286" g_stop="87844" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="908" r_stop="1350" r_length="443" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1352" polyA_stop="1370"/>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E745887" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1350</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91592" e_stop="90686"/>
          <exon e_start="88286" e_stop="87844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTGGCGATCTTTTTTGATTTTGAGAATAGTACCCCAAATATCCATAGATACTTGTCGACAATTTTGCTTAATCGCCATTGATTTCAAAGATCCAGATCTTGTTCTTCATTGATAATTTAAGCTGTTTATAGATGAATTGAGGTGAATTTGAGCAGATTTGAACTCCATTGTAGGGTGTTTTCATGAAGTTTCAATGTCGCCTAAGACTCTAGATTCACGTCACGCCATTGAATCGTGTACGTATCATCTCCATTCTTGGAAACCCTTTCAGTTTCCGTCTCCGAATTCTAAAACCCTAGATTTAGATTCGCCAAAAACTTACTCCCCGTCGACCCATGGTGGGCTGCATACGAAGCGTCAATGTAGAGCGGATCGAACAACTTCGATTCCAATTGAAGCTCTTGATATGTCAAAGTTAAGTTTATTTGAGGAGGATAAGCCTTTATCGGTTCATAAACGGGAGAATCTTAGGTTGATAGCTGGTAAGAGGCGGAGACGTGGGTCTCGTTCGGTTTCCGGGAGGAGTAGTGATCGGAGTGGAACTAGAAGACGGTGTTGCTCGGTTGGAGCTTCAGCAGCTTATGGGACTTGTTCGGATTTTCCTGTTGCTGCGGGGACTGATTCAAGTGGGGAATTGTTCGTGAATGGGGATATGCATTGGACTTTGGATGTTAGTGAGGTTACAAAGAGTTTAAGGAAGGAGAAGGAAGGTGGTGGGGTTGGTGAAAGAGAGAATAATTTAAATGGTTTGTCTGTGCAAAGTGGGAATTTTGAGGGGTTGGGTAATGAGTCAGGGTATGGGAGTGAACCGGGGTATCGTGGTGATGCAGAGTTTGGATATGGTGATGAGTTTGATGAAGAAGAAGATGATCAACGGCTTTCCTTCTGGGGCGATGAATTTGGAGGTATACCGTGCAATCTGCATAAAGCCCTTTCATTTAAATATTTGTAGTGTCAGAATCAGCTTGTGCTAACCTTGACTATTCCTATGGATACATGGTAGCTCCCACCAATACAGTTAGCGTGTAACTTAAGCTTTTTGCCTGCTGAGATCTCATGGTTCTCCTCCTGCTTCATTGATTGATTGCTGAACCACACCCTAGGGTGCGTCCTGAATTATGCAATAAGCCGGAACTAGTTGGTTGTAGGTTAATGAATCATTATATCCATTTAGCTTCATTTGGGACGGTTGTCTTGATTGTTGTATCGTACTACTTAGATTTGCTCGAAGTATTTACCTGTTGAGACAAAGATTGACGTTCTGATCTCTGTCAGTAAAAATGGACTCTATATGGAATGCCATAGTTTTAAGAGTTACTGTTTGATATGTTCTATCAGAAAAGTCAGTTTCCTCCTGTCCGAAGAGTTAGACTAGACAATGCCAATGCCTTGTAGTCTCGGAAAGAAACATGTTAATAGCTTCTTTTAAGGATGTATGGCTGCTTGATGAACTCCTATAAGAAATATTGTTCAGGAAGTTATTTTTTTTGATTCATAACCATTTTCATGTTTGTGATACATATGTTTTTTCTGTGGAGAATCTTTATATTATGATTCTGCTAACAGAGAATATATATATTATGACACTCACGGAGAAGTTATTCCCTGTCTATAGAACACAAATACAGTACTGCAAGTTGGAATGGAAAGAAGTAATTAAGCAAAGTTGTGCCAGAACTATTGATGTTAATTCATTTATGCATTTGGTGGTTGATATATTGTTTTATTAATGCTTCAGCATTTGAAACAAATATGAGAGAGACCCGAGGGGGGGGGGGGCGGTCTGTGTGGAAGTTATTAAACTTTGGTTGGGATATGCAAATGATGGGTTTCTAATGGCTGATAGAAACATGATAAATGAAATTACAGAACTTGTAAATGTACATGGCACTAATCCAATGATTGGAACGGAGGATTAAACTTGGTTTTAGAAGTTGAGCTAGAAGTATGCCGTGAAGTTGTCAAGTTTCAATTATATCCCAGTTGGAGCTTTACAGTGAGCGTGGACATGTTTAAGATTTCAAGTGAAGTCTGGGTGAACTGTATATATTCTACTTGTGTATGTCTTAAAGTCCACGGTTGCTTTACTTGCAGTTGGTAGTTGTCTGTGACTTCTAACTCCTTTCCTTTTGATAAGGTAAATAATTTTTTTCAATGGAACGTTTACTAACTACTTCATCAAACAAAAAAGGTAAATACTTTAATAATACTGTAATAGTGTGACTTCTAACTTATATGTTGCTTAATATAGTCTACAGACAGTCTGCTCTTCCGATTCTTACTTTTCTGATGAGTGGTACCAGTGGTCTTATTTCTGTTTGTTTACAAGCAGGATTAAGACTATTATCTGCTTTGTTTTTCACTGAAGTCCTGTTAACAAATTTGTTCCAAATCAGTGCTTAAACTACCGTGTATAATCACTTGCCTTATGACACAATTAACTGCTTGTGCTATACTAATGGTGGCTCTTATATAGTTATAGCTGATATCAATGACTCATTAACCTATATTGACTTTTGAGTAGGGGTGGAAAGGGGATACAAATGATAGGGAAGCGTAAGGAGGTATTTTGTCATTCGTTGGAGTTAGCAAGTAAAGTTAATGCCTTTCAATTCCTTCGACTTTTCAAAGGTTAGAGATAGATATATAATGTGGAAATTCTAATTGGTCTCGGTGGTCCTCTGCTGAGATCCAGGCCTTCATTCCATCTTCATGATTCAATTCTTACGTAATCAAAATCGGTTTCTCATCCTTACTTTTTTACCCCATTGTTTGCAATCCTCCCTTTCTAAGGAAGTTCCAGTTTTTCTGGAAGATAGGAAACAGATAATGTCGCTCCAACCCCTTTTTCCCTTTGATTTAGTATAACCAGGGTAGATCTAGCCTTGTTTAACTGGGGAGTCAACTGACACCCCTTCTCCAAAAGTTACACTGCATAGATGGATTAAAATACTCCTAAAAACTTCATGGGGCTTCTTTGTGTGTTCACTTTTTTATATTTAGGATTTCTTACTGAAAAATTCTGGATCTACCATTGGTATAACCATGTTAACATGTATGCTGTGTTCTTTACTAGTGGCAGGTGGTTAAGATGTTTCTATAAGCAGACTGTTTTTGTTGAGATCTCAATAGAAGTGGAGGGCTGCATGATTCTAAGGCAGTTAGATTGAGCTTGGTAGTTGATCAGTAGTACTACTTTACTTGGTGCTTGTGTATGCACTCATGGCTGCTAATTGAGTAGAAAGCCCACCTATTGTGTTTACTTTATTGCTTAACTTGTTTCTTTGGTCTCTTGTACTAACAGCACTCTCTAGGATGGAGAAAGTTGGAGAGAACTCGTTGCAGAAGGTGCACCATAGATGTCGGCGGAGGAAACAAGATTGTCGAATGGTGATCCCTTGAGGTTTGCTGATGTTGATGAGTGTGATTGATAGCCGGTTCCAAGATTTTGCCAGTGATACAATCGTGTAATTCATGAGCAGAACCTTTTTGGGTTTGAATACAGAATCTGCTGCTGTAAATATGAACAAATGATGTTAATTGTTCATGTCTTATTGTCATGGTACCCCTGATGTTCACCATGGTATGTTTTGGTTGGGGATTAGACAAGTTAGTATATTGTACTATTTAAGGGGTCGTTTGATAGTGTGTAAGAGTAGCGTTGAATATTGTGTATTAGTAATACTGTGATTATCTTTTGTTGTGTTCTATTTCTTTTGGTATATTAAACATAACATGTTTTGCCTA</genome_strand>
        <mrna_strand>GAGTGGCGATCTTTTTTGATTTTGAGAATAGTACCCCAAATATCCATAGATACTTGTCGACAATTTTGCTTAATCGCCATTGATTTCAAAGATCCAGATCTTGTTCTTCATTGATAATTTAAGCTGTTTATAGATGAATTGAGGTGAATTTGAGCAGATTTGAACTCCATTGTAGGGTGTTTTCATGAAGTTTCAATGTCGCCTAAGACTCTAGATTCACGTCACGCCATTGAATCGTGTACGTATCATCTCCATTCTTGGAAACCCTTTCAGTTTCCGTCTCCGAATTCTAAAACCCTAGATTTAGATTCGCCAAAAACTTACTCCCCGTCGACCCATGGTGGGCTGCATACGAAGCGTCAATGTAGAGCGGATCGAACAACTTCGATTCCAATTGAAGCTCTTGATATGTCAAAGTTAAGTTTATTTGAGGAGGATAAGCCTTTATCGGTTCATAAACGGGAGAATCTTAGGTTGATAGCTGGTAAGAGGCGGAGACGTGGGTCTCGTTCGGTTTCCGGGAGGAGTAGTGATCGGAGTGGAACTAGAAGACGGTGTTGCTCGGTTGGAGCTTCAGCAGCTTATGGGACTTGTTCGGATTTTCCTGTTGCTGCGGGGACTGATTCAAGTGGGGAATTGTTCGTGAATGGGGATATGCATTGGACTTTGGATGTTAGTGAGGTTACAAAGAGTTTAAGGAAGGAGAAGGAAGGTGGTGGGGTTGGTGAAAGAGAGAATAATTTAAATGGTTTGTCTGTGCAAAGTGGGAGTTTTGAGGGGTTGGGTAATGAGTCAGGGTATGGGAGTGAACCGGGGTATCGTGGTGATGCAGAGTTTGGATATGGTGATGAGTTTGATGAAGAAGAAGATGATCAACGGCTTTCCTTCTGGGGCGATGAATTTGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTCTCTAGGATGGAGAAAGTTGGAGAGAACTCGTTGCAGAAGGTGCACCATAGATGTCGGCGGAGGAAACAAGATTGTCGAATGGTGATCCCTTGAGGTTTGCTGATGTTGATGAGTGTGATTGATAGCCGGTTCCAAGATTTTGCCAGTGATACAATCGTGTAATTCATGAGCAGAACCTTTTTGGGTTTGAATACAGAATCTGCTGCTGTAAATATGAACAAATGATGTTAATTGTTCATGTCTTATTGTCATGGTACCCCTGATGTTCACCATGGTATGTTTTGGTTGGGGATTAGACAAGTTAGTATATTGTACTATTTAAGGGGTCGTTTGATAGTGTGTAAGAGTAGCGTTGAATATTGTGTATTAGTAATACTGTGATTATCTTTTGTTGTGTTCTATTTCTTTTGGTATATTAAACATAACATGTTTTGCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318295" ref_strand="+" ref_description="SGN-E318295 [cTOA-29-P7]">
      <seq>agagtttaaggaaggagaaggaaggtggtggggttggtgaaagagagaataatttaaatggtttgtctgtgcaaagtgggaattttgaggggttgggtaatgagtcagggtatgggagtgaaccggggtatcgtggtgatgcagagtttggatatggtgatgagtttgatgaagaagaagatgatcaacggctttccttctggggcgatgaatttggagcactctctaggatggagaaagttggagagaactcgttgcagaaggtgcaccatagatgtcggcggaggaaacaagattgtcgaatggtgatcccttgaggtttgctgatgttgatgagtgtgattgatagccggttccaagattttgccagtgatacaatcgtgtaattcatgagcagaacctttttgggtttgaatacagaatctgctgctgtaaatatgaacaaatgatgttaattgttcatgtcttattgtcatggtacccctgatgttcaccatggtatgttttggttggggattagacaagttagtatattgtactatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="91204" stop="87663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90904" g_stop="90686" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90685" i_stop="88287" i_length="2399">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88286" g_stop="87963" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="543" r_length="324" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E318295" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90904" e_stop="90686"/>
          <exon e_start="88286" e_stop="87963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTTTAAGGAAGGAGAAGGAAGGTGGTGGGGTTGGTGAAAGAGAGAATAATTTAAATGGTTTGTCTGTGCAAAGTGGGAATTTTGAGGGGTTGGGTAATGAGTCAGGGTATGGGAGTGAACCGGGGTATCGTGGTGATGCAGAGTTTGGATATGGTGATGAGTTTGATGAAGAAGAAGATGATCAACGGCTTTCCTTCTGGGGCGATGAATTTGGAGGTATACCGTGCAATCTGCATAAAGCCCTTTCATTTAAATATTTGTAGTGTCAGAATCAGCTTGTGCTAACCTTGACTATTCCTATGGATACATGGTAGCTCCCACCAATACAGTTAGCGTGTAACTTAAGCTTTTTGCCTGCTGAGATCTCATGGTTCTCCTCCTGCTTCATTGATTGATTGCTGAACCACACCCTAGGGTGCGTCCTGAATTATGCAATAAGCCGGAACTAGTTGGTTGTAGGTTAATGAATCATTATATCCATTTAGCTTCATTTGGGACGGTTGTCTTGATTGTTGTATCGTACTACTTAGATTTGCTCGAAGTATTTACCTGTTGAGACAAAGATTGACGTTCTGATCTCTGTCAGTAAAAATGGACTCTATATGGAATGCCATAGTTTTAAGAGTTACTGTTTGATATGTTCTATCAGAAAAGTCAGTTTCCTCCTGTCCGAAGAGTTAGACTAGACAATGCCAATGCCTTGTAGTCTCGGAAAGAAACATGTTAATAGCTTCTTTTAAGGATGTATGGCTGCTTGATGAACTCCTATAAGAAATATTGTTCAGGAAGTTATTTTTTTTGATTCATAACCATTTTCATGTTTGTGATACATATGTTTTTTCTGTGGAGAATCTTTATATTATGATTCTGCTAACAGAGAATATATATATTATGACACTCACGGAGAAGTTATTCCCTGTCTATAGAACACAAATACAGTACTGCAAGTTGGAATGGAAAGAAGTAATTAAGCAAAGTTGTGCCAGAACTATTGATGTTAATTCATTTATGCATTTGGTGGTTGATATATTGTTTTATTAATGCTTCAGCATTTGAAACAAATATGAGAGAGACCCGAGGGGGGGGGGGGCGGTCTGTGTGGAAGTTATTAAACTTTGGTTGGGATATGCAAATGATGGGTTTCTAATGGCTGATAGAAACATGATAAATGAAATTACAGAACTTGTAAATGTACATGGCACTAATCCAATGATTGGAACGGAGGATTAAACTTGGTTTTAGAAGTTGAGCTAGAAGTATGCCGTGAAGTTGTCAAGTTTCAATTATATCCCAGTTGGAGCTTTACAGTGAGCGTGGACATGTTTAAGATTTCAAGTGAAGTCTGGGTGAACTGTATATATTCTACTTGTGTATGTCTTAAAGTCCACGGTTGCTTTACTTGCAGTTGGTAGTTGTCTGTGACTTCTAACTCCTTTCCTTTTGATAAGGTAAATAATTTTTTTCAATGGAACGTTTACTAACTACTTCATCAAACAAAAAAGGTAAATACTTTAATAATACTGTAATAGTGTGACTTCTAACTTATATGTTGCTTAATATAGTCTACAGACAGTCTGCTCTTCCGATTCTTACTTTTCTGATGAGTGGTACCAGTGGTCTTATTTCTGTTTGTTTACAAGCAGGATTAAGACTATTATCTGCTTTGTTTTTCACTGAAGTCCTGTTAACAAATTTGTTCCAAATCAGTGCTTAAACTACCGTGTATAATCACTTGCCTTATGACACAATTAACTGCTTGTGCTATACTAATGGTGGCTCTTATATAGTTATAGCTGATATCAATGACTCATTAACCTATATTGACTTTTGAGTAGGGGTGGAAAGGGGATACAAATGATAGGGAAGCGTAAGGAGGTATTTTGTCATTCGTTGGAGTTAGCAAGTAAAGTTAATGCCTTTCAATTCCTTCGACTTTTCAAAGGTTAGAGATAGATATATAATGTGGAAATTCTAATTGGTCTCGGTGGTCCTCTGCTGAGATCCAGGCCTTCATTCCATCTTCATGATTCAATTCTTACGTAATCAAAATCGGTTTCTCATCCTTACTTTTTTACCCCATTGTTTGCAATCCTCCCTTTCTAAGGAAGTTCCAGTTTTTCTGGAAGATAGGAAACAGATAATGTCGCTCCAACCCCTTTTTCCCTTTGATTTAGTATAACCAGGGTAGATCTAGCCTTGTTTAACTGGGGAGTCAACTGACACCCCTTCTCCAAAAGTTACACTGCATAGATGGATTAAAATACTCCTAAAAACTTCATGGGGCTTCTTTGTGTGTTCACTTTTTTATATTTAGGATTTCTTACTGAAAAATTCTGGATCTACCATTGGTATAACCATGTTAACATGTATGCTGTGTTCTTTACTAGTGGCAGGTGGTTAAGATGTTTCTATAAGCAGACTGTTTTTGTTGAGATCTCAATAGAAGTGGAGGGCTGCATGATTCTAAGGCAGTTAGATTGAGCTTGGTAGTTGATCAGTAGTACTACTTTACTTGGTGCTTGTGTATGCACTCATGGCTGCTAATTGAGTAGAAAGCCCACCTATTGTGTTTACTTTATTGCTTAACTTGTTTCTTTGGTCTCTTGTACTAACAGCACTCTCTAGGATGGAGAAAGTTGGAGAGAACTCGTTGCAGAAGGTGCACCATAGATGTCGGCGGAGGAAACAAGATTGTCGAATGGTGATCCCTTGAGGTTTGCTGATGTTGATGAGTGTGATTGATAGCCGGTTCCAAGATTTTGCCAGTGATACAATCGTGTAATTCATGAGCAGAACCTTTTTGGGTTTGAATACAGAATCTGCTGCTGTAAATATGAACAAATGATGTTAATTGTTCATGTCTTATTGTCATGGTACCCCTGATGTTCACCATGGTATGTTTTGGTTGGGGATTAGACAAGTTAGTATATTGTACTATT</genome_strand>
        <mrna_strand>AGAGTTTAAGGAAGGAGAAGGAAGGTGGTGGGGTTGGTGAAAGAGAGAATAATTTAAATGGTTTGTCTGTGCAAAGTGGGAATTTTGAGGGGTTGGGTAATGAGTCAGGGTATGGGAGTGAACCGGGGTATCGTGGTGATGCAGAGTTTGGATATGGTGATGAGTTTGATGAAGAAGAAGATGATCAACGGCTTTCCTTCTGGGGCGATGAATTTGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTCTCTAGGATGGAGAAAGTTGGAGAGAACTCGTTGCAGAAGGTGCACCATAGATGTCGGCGGAGGAAACAAGATTGTCGAATGGTGATCCCTTGAGGTTTGCTGATGTTGATGAGTGTGATTGATAGCCGGTTCCAAGATTTTGCCAGTGATACAATCGTGTAATTCATGAGCAGAACCTTTTTGGGTTTGAATACAGAATCTGCTGCTGTAAATATGAACAAATGATGTTAATTGTTCATGTCTTATTGTCATGGTACCCCTGATGTTCACCATGGTATGTTTTGGTTGGGGATTAGACAAGTTAGTATATTGTACTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292507" ref_strand="+" ref_description="SGN-E292507 [cLET-16-H6]">
      <seq>aaagtcttctctttccccgtgctttcttcctacacgtgaaattgacggagtccccatttttctcattcgccattaacgcttcagtccaaacttcaccttccccagctcccatttttctacaatctcttcatatatagttacttgcttgacccatttatttttttttttggtgatttttgagaaatttttttataaatctttctgttcccaaaattacctgttcaacctagaatcaatcttatttgtttgatcggaaaatcaattatgagaggaaaatgggaagtagtacgaatttgggtgttgtatttactgcttctatctgagttctttcagggatgtttttctgcttttaacctgcctcgtccaccatggaagaaacagtcaaattttggttcctctgttgtttttccactttttgggaatgtgtatccaaaagggtattatcaggtgacactcaatgtaggccaaccccccaaaccttactttcttgacattgacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="104368" stop="107191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104668" g_stop="105104" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105105" i_stop="106827" i_length="1723">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106828" g_stop="106891" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="501" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E292507" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104668" e_stop="105104"/>
          <exon e_start="106828" e_stop="106891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTCTTCTCTTTCCCCGTGCTTTCTTCCTACACGTGAAATTGACGGAGTCCCCATTTTTCTCATTCGCCATTAACGCTTCAGTCCAAACTTCACCTTCCCCAGCTCCCATTTTTCTACAATCTCTTCATATATAGTTACTTGCTTGACCCATTTATTTTTTTTTTTGGTGATTTTTGAGAAATTTTTTTATAAATCTTTCTGTTCCCAAAATTACCTGTTCAACCTAGAATCAATCTTATTTGTTTGATCGGAAAATCAATTATGAGAGGAAAATGGGAAGTAGTACGAATTTGGGTGTTGTATTTACTGCTTCTATCTGAGTTCTTTCAGGGATGTTTTTCTGCTTTTAACCTGCCTCGTCCACCATGGAAGAAACAGTCAAATTTTGGTTCCTCTGTTGTTTTTCCACTTTTTGGGAATGTGTATCCAAAAGGGTATTTTCCTTTTCCTCTACTCCTTTTTCTCAATTATCTATACCTTGTTATTGTATGCTCTGTGCTACTTTGCTATTAGCTGTCGTGTTTTTCTTTTAAGTATTGTTTTGTTTTGCTTGAGCCGAGCTTCATTCGGAAACAGGTTTGCATACACTCTATCCTCCTGGGACCCAACTTTATGGGATTTTTTGTTGTATCTCTGTAGTATCTGCTTAAATTGCTTATGGGTGTCAATGAATCTTCTGCAAAAAAAAAATGCTGATTAAACAGTTTACAAATTCTTAAAGGATTTTTTTAATTCTGTCTGTAGCAATAAGGACATGATTTTTGTTGGAGGTAGAGTTAGTATTTGATCTCCATGGGTTCAACCTTAGAGATTTTTTAGCTTTGAACTTTTATACGTAAATTTATGTTTCGTGTCGAAGTTAAATAGCTGCATTTGCGACTGATGCTTGTAAAGATTATATAAGTAGTTTTATCTATATTTTTTCTCAACTTCTGTGTATTGATTTGTTTATTTGTGATCTGTTACTTTTCTTCAGTAGATCGAATATTGGAAGGGCTCTTTTGGCGTATTCTTTAATTTGATAATTATCTTGCAAATTTTTCAGCATTTTTGCGTGAAAATTTCGTGTACATTTCCCATATACTTGAATAGTTTGGTGTGGTTCTCCATTGAAGTATCCTATGATTTCCTAGTTTATGTACTTGAGACTTTAATCTGACCTGAAGGTTAGAACGAATTGTAAATCTCTTTCAAATGAATCTATTTGATTTATCTTTTAGACAGGAAGAACTTGCAATGGTATTTCAATTTCAATTGGAACATGGGTTTGATTCACACTCCGTGACTGAAGAAAGATGTATAACAGAGTCTTTGTCTAAAGAAATGAATTGAGAAAGGACAGATGTATCCGGGTTTTTGATATTGAGTAGATGAGAAGTCAGTCTTTTATAAGTGTGTCTGGAAATTATGACTTATTGGTCTTATAATAATGATGGTTCAACTAGGGGGTTTCTCCGTGCAAATATTTTCTCAGGGGTCTGTGCAATTGAGGTCCTCACTGATCCTTTTCTCATTCTATACAAGCAAAGAGGCTCATTAGCAAATTTTTCTTCTCTTTACTACTGATACATGTAAAGAGAAGAAAAACTTGCACGTGGGCCTCTTTACTGGTATAAAATGAGAAAAGGAGCAGTCGGGACCCCTGTTGCACACTTCATTCAGTAAATATTTGCACAAGGACGCGTCCCTTGTGGAACCATAATCACCATAGACCAATATATCATTCTTTCCAGAGACATCCCTAGAAGACCGACTTCTCATCTTTTCAACAAAGATAAAGGAAGAACTTGCATTGTTATTTCAATTTGAACATAGGCTTGATTCACCATCCATGATCGGAGAAAGATTTATCGTCTGAAAAACTGGAGTCTTTGTCTAAAGAAATGCGTTGAGAAAGGACAGATGTATCTGGGTTTTGCTGGGATGCAATGGGCTTGCTTACACAAAACATTACTCTATTCAATCTAACTTACATCAGCTAGAAATTTTATACGAGTTTTGGTATTGGGCATTAGTTCTTGGTTCACCATGAGAAGATTTGTTGCAAGTTTCTAGAATTTGGATTTCCTTAAAGTTGTGTTTGAAATTCGTAAAACTTGCATATTACTTGTTTCCTGTTCTCTGTCTCTTAAACTCGTATGCGCAATTCACATTCAGGTATTATCAGGTGACACTCAATGTAGGCCAACCCCCCAAACCTTACTTTCTTGACATTGACACA</genome_strand>
        <mrna_strand>AAAGTCTTCTCTTTCCCCGTGCTTTCTTCCTACACGTGAAATTGACGGAGTCCCCATTTTTCTCATTCGCCATTAACGCTTCAGTCCAAACTTCACCTTCCCCAGCTCCCATTTTTCTACAATCTCTTCATATATAGTTACTTGCTTGACCCATTTATTTTTTTTTTTGGTGATTTTTGAGAAATTTTTTTATAAATCTTTCTGTTCCCAAAATTACCTGTTCAACCTAGAATCAATCTTATTTGTTTGATCGGAAAATCAATTATGAGAGGAAAATGGGAAGTAGTACGAATTTGGGTGTTGTATTTACTGCTTCTATCTGAGTTCTTTCAGGGATGTTTTTCTGCTTTTAACCTGCCTCGTCCACCATGGAAGAAACAGTCAAATTTTGGTTCCTCTGTTGTTTTTCCACTTTTTGGGAATGTGTATCCAAAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTATCAGGTGACACTCAATGTAGGCCAACCCCCCAAACCTTACTTTCTTGACATTGACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306330" ref_strand="+" ref_description="SGN-E306330 [cLEX-13-K20]">
      <seq>tttcttcctacacgtgaaattgacggagtccccatttttctcattcgccattaacgcttcagtccaaacttcaccttccccagctcccatttttctacaatctcttcatatatagttacttgcttgacccatttatttttttttttggtgatttttgagaaatttttttataaatctttctgttcccaaaattacctgttcaacctagaatcaatcttatttgtttgatcggaaaatcaattatgagaggaaaatgggaagtagtacgaatttgggtgttgtatttactgcttctatctgagttctttcagggatgtttttctgcttttaacctgcctcgtccaccatggaagaaacagtcaaattttggttcctctgttgtttttccactttttgggaatgtgtatccaaaagggtattatcaggtgacactcaatgtaggccaaccccccaaaccttactttcttgacattgacacagggagtgatctcacttggctccaatgtgacgcaccttgtgtcaaatgtattccagcacctcacagtccgtacaaaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="104390" stop="107411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104690" g_stop="105104" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105105" i_stop="106827" i_length="1723">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106828" g_stop="106945" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="533" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106946" i_stop="107087" i_length="142">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107088" g_stop="107111" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="557" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E306330" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104690" e_stop="105104"/>
          <exon e_start="106828" e_stop="106945"/>
          <exon e_start="107088" e_stop="107111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCCTACACGTGAAATTGACGGAGTCCCCATTTTTCTCATTCGCCATTAACGCTTCAGTCCAAACTTCACCTTCCCCAGCTCCCATTTTTCTACAATCTCTTCATATATAGTTACTTGCTTGACCCATTTATTTTTTTTTTTGGTGATTTTTGAGAAATTTTTTTATAAATCTTTCTGTTCCCAAAATTACCTGTTCAACCTAGAATCAATCTTATTTGTTTGATCGGAAAATCAATTATGAGAGGAAAATGGGAAGTAGTACGAATTTGGGTGTTGTATTTACTGCTTCTATCTGAGTTCTTTCAGGGATGTTTTTCTGCTTTTAACCTGCCTCGTCCACCATGGAAGAAACAGTCAAATTTTGGTTCCTCTGTTGTTTTTCCACTTTTTGGGAATGTGTATCCAAAAGGGTATTTTCCTTTTCCTCTACTCCTTTTTCTCAATTATCTATACCTTGTTATTGTATGCTCTGTGCTACTTTGCTATTAGCTGTCGTGTTTTTCTTTTAAGTATTGTTTTGTTTTGCTTGAGCCGAGCTTCATTCGGAAACAGGTTTGCATACACTCTATCCTCCTGGGACCCAACTTTATGGGATTTTTTGTTGTATCTCTGTAGTATCTGCTTAAATTGCTTATGGGTGTCAATGAATCTTCTGCAAAAAAAAAATGCTGATTAAACAGTTTACAAATTCTTAAAGGATTTTTTTAATTCTGTCTGTAGCAATAAGGACATGATTTTTGTTGGAGGTAGAGTTAGTATTTGATCTCCATGGGTTCAACCTTAGAGATTTTTTAGCTTTGAACTTTTATACGTAAATTTATGTTTCGTGTCGAAGTTAAATAGCTGCATTTGCGACTGATGCTTGTAAAGATTATATAAGTAGTTTTATCTATATTTTTTCTCAACTTCTGTGTATTGATTTGTTTATTTGTGATCTGTTACTTTTCTTCAGTAGATCGAATATTGGAAGGGCTCTTTTGGCGTATTCTTTAATTTGATAATTATCTTGCAAATTTTTCAGCATTTTTGCGTGAAAATTTCGTGTACATTTCCCATATACTTGAATAGTTTGGTGTGGTTCTCCATTGAAGTATCCTATGATTTCCTAGTTTATGTACTTGAGACTTTAATCTGACCTGAAGGTTAGAACGAATTGTAAATCTCTTTCAAATGAATCTATTTGATTTATCTTTTAGACAGGAAGAACTTGCAATGGTATTTCAATTTCAATTGGAACATGGGTTTGATTCACACTCCGTGACTGAAGAAAGATGTATAACAGAGTCTTTGTCTAAAGAAATGAATTGAGAAAGGACAGATGTATCCGGGTTTTTGATATTGAGTAGATGAGAAGTCAGTCTTTTATAAGTGTGTCTGGAAATTATGACTTATTGGTCTTATAATAATGATGGTTCAACTAGGGGGTTTCTCCGTGCAAATATTTTCTCAGGGGTCTGTGCAATTGAGGTCCTCACTGATCCTTTTCTCATTCTATACAAGCAAAGAGGCTCATTAGCAAATTTTTCTTCTCTTTACTACTGATACATGTAAAGAGAAGAAAAACTTGCACGTGGGCCTCTTTACTGGTATAAAATGAGAAAAGGAGCAGTCGGGACCCCTGTTGCACACTTCATTCAGTAAATATTTGCACAAGGACGCGTCCCTTGTGGAACCATAATCACCATAGACCAATATATCATTCTTTCCAGAGACATCCCTAGAAGACCGACTTCTCATCTTTTCAACAAAGATAAAGGAAGAACTTGCATTGTTATTTCAATTTGAACATAGGCTTGATTCACCATCCATGATCGGAGAAAGATTTATCGTCTGAAAAACTGGAGTCTTTGTCTAAAGAAATGCGTTGAGAAAGGACAGATGTATCTGGGTTTTGCTGGGATGCAATGGGCTTGCTTACACAAAACATTACTCTATTCAATCTAACTTACATCAGCTAGAAATTTTATACGAGTTTTGGTATTGGGCATTAGTTCTTGGTTCACCATGAGAAGATTTGTTGCAAGTTTCTAGAATTTGGATTTCCTTAAAGTTGTGTTTGAAATTCGTAAAACTTGCATATTACTTGTTTCCTGTTCTCTGTCTCTTAAACTCGTATGCGCAATTCACATTCAGGTATTATCAGGTGACACTCAATGTAGGCCAACCCCCCAAACCTTACTTTCTTGACATTGACACAGGGAGTGATCTCACTTGGCTCCAATGTGACGCACCTTGTGTCAAATGTATTCCAGTGAGTACATCTTTTTATTCCTTCTGCAGCCTAGCTCTTTCAAGTTACACGGAAGATTATTAATATGAATTCAAATCCAAAATCATATGTAAGTTGTCAGAAATATATTTCCTAATTTCTGCATATATGTATGACATTACAGGCACCTCACAGTCCGTACAAACCG</genome_strand>
        <mrna_strand>TTTCTTCCTACACGTGAAATTGACGGAGTCCCCATTTTTCTCATTCGCCATTAACGCTTCAGTCCAAACTTCACCTTCCCCAGCTCCCATTTTTCTACAATCTCTTCATATATAGTTACTTGCTTGACCCATTTATTTTTTTTTTTGGTGATTTTTGAGAAATTTTTTTATAAATCTTTCTGTTCCCAAAATTACCTGTTCAACCTAGAATCAATCTTATTTGTTTGATCGGAAAATCAATTATGAGAGGAAAATGGGAAGTAGTACGAATTTGGGTGTTGTATTTACTGCTTCTATCTGAGTTCTTTCAGGGATGTTTTTCTGCTTTTAACCTGCCTCGTCCACCATGGAAGAAACAGTCAAATTTTGGTTCCTCTGTTGTTTTTCCACTTTTTGGGAATGTGTATCCAAAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTATCAGGTGACACTCAATGTAGGCCAACCCCCCAAACCTTACTTTCTTGACATTGACACAGGGAGTGATCTCACTTGGCTCCAATGTGACGCACCTTGTGTCAAATGTATTCCA..............................................................................................................................................GCACCTCACAGTCCGTACAAACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475993" ref_strand="+" ref_description="SGN-E475993 [cSTB-43-A1]">
      <seq>atatatcatgctttccagagacatccctagaagacaaacttctcatcttttcaacatcgaaaaggaagaacttgcattattatttcaattggaacatgggcttgattcaccatccatgatcggagaaagatttatcgtctgaaaaactggagtctttgtctaaaaaaatgcgttgagaaaggacaggtgtatctgggttttgctgtgatgcaatgggcttgtttacacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="106086" stop="106917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106386" g_stop="106617" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E475993" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>232</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E475993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106386" e_stop="106617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATATCATTCTTTCCAGAGACATCCCTAGAAGACCGACTTCTCATCTTTTCAACAAAGATAAAGGAAGAACTTGCATTGTTATTTCAATTTGAACATAGGCTTGATTCACCATCCATGATCGGAGAAAGATTTATCGTCTGAAAAACTGGAGTCTTTGTCTAAAGAAATGCGTTGAGAAAGGACAGATGTATCTGGGTTTTGCTGGGATGCAATGGGCTTGCTTACACAAA</genome_strand>
        <mrna_strand>ATATATCATGCTTTCCAGAGACATCCCTAGAAGACAAACTTCTCATCTTTTCAACATCGA-AAAGGAAGAACTTGCATTATTATTTCAATTGGAACATGGGCTTGATTCACCATCCATGATCGGAGAAAGATTTATCGTCTGAAAAACTGGAGTCTTTGTCTAAAAAAATGCGTTGAGAAAGGACAGGTGTATCTGGGTTTTGCTGTGATGCAATGGGCTTGTTTACACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207928" ref_strand="+" ref_description="SGN-E207928 [cLEC-34-D7]">
      <seq>ctcaatgtaggccaaccccccaaaccttactttcttgacattgacacagggagtgatctcacttggctccaatgtgacgcaccttgtgtcaaatgtattccagcacctcacagtccgtacaaaccgaataaaaatgttatcaagcataaggatcccatttgtgcatcccttcactcacctgcaaaccatccccgttacagtcctgacgatcaatgtgactatgaggttgagtatgcggatcattgttcatccttgggagtgctggtcagagacgcatttccagtaaaattcaccaacggtagctccattgctcctcctctggtgttcggttgtgggtatgatcaagaagtcccagcctctgagcatgcaccttatacggatggaattcttggcctagggaatggaaaatcaagcatagtatcacagttgagtagcttgggttttatccggaatgtagtaggtcactgtttaagcgggcaaggtggaggttttcttttccttggagatgatgttgtcccgtcttctgggattgtttggtcaccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="106544" stop="108118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106844" g_stop="106945" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106946" i_stop="107087" i_length="142">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107088" g_stop="107314" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="329" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107315" i_stop="107603" i_length="289">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107604" g_stop="107818" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="544" r_length="215" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E207928" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106844" e_stop="106945"/>
          <exon e_start="107088" e_stop="107314"/>
          <exon e_start="107604" e_stop="107818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATGTAGGCCAACCCCCCAAACCTTACTTTCTTGACATTGACACAGGGAGTGATCTCACTTGGCTCCAATGTGACGCACCTTGTGTCAAATGTATTCCAGTGAGTACATCTTTTTATTCCTTCTGCAGCCTAGCTCTTTCAAGTTACACGGAAGATTATTAATATGAATTCAAATCCAAAATCATATGTAAGTTGTCAGAAATATATTTCCTAATTTCTGCATATATGTATGACATTACAGGCACCTCACAGTCCGTACAAACCGAATAAAAATGTTATCAAGCATAAGGATCCCATTTGTGCATCCCTTCACTCACCTGCAAACCATCCCCGTTACAGTCCTGACGATCAATGTGACTATGAGGTTGAGTATGCGGATCATTGTTCATCCTTGGGAGTGCTGGTCAGAGACGCATTTCCAGTAAAATTCACCAACGGTAGCTCCATTGCTCCTCCTCTGGTGTTCGGGTAAGAAGCTGATAAACACTCCTTAAAACTTAACCTTTAAAATTGTCAACCAACAAAGAGAATGTTACTTCTCCACTTTCACTGCTAAAAAGATTGGAATCACAACGGAGAAATCTGTTGCTATTTCTATTTAGCAACGAGTTAGGGACGGATTATCAAAAAAAAATTGCTAGCTACGAGCAGTTTAGTGATGAAGTTTGTTGCTAATTCTAGTTTTTTTTTTGTAGTGTTTATTCTGTTACTGAAATTGTGGTGCTTGTGATTCATGAGTTTGATTTCCCTTCTGTAGTTGTGGGTATGATCAAGAAGTCCCAGCCTCTGAGCATGCACCTTATACGGATGGAATTCTTGGCCTAGGGAATGGAAAATCAAGCATAGTATCACAGTTGAGTAGCTTGGGTTTTATCCGGAATGTAGTAGGTCACTGTTTAAGCGGGCAAGGTGGAGGTTTTCTTTTCCTTGGAGATGATGTTGTCCCGTCTTCTGGGATTGTTTGGTCACCTA</genome_strand>
        <mrna_strand>CTCAATGTAGGCCAACCCCCCAAACCTTACTTTCTTGACATTGACACAGGGAGTGATCTCACTTGGCTCCAATGTGACGCACCTTGTGTCAAATGTATTCCA..............................................................................................................................................GCACCTCACAGTCCGTACAAACCGAATAAAAATGTTATCAAGCATAAGGATCCCATTTGTGCATCCCTTCACTCACCTGCAAACCATCCCCGTTACAGTCCTGACGATCAATGTGACTATGAGGTTGAGTATGCGGATCATTGTTCATCCTTGGGAGTGCTGGTCAGAGACGCATTTCCAGTAAAATTCACCAACGGTAGCTCCATTGCTCCTCCTCTGGTGTTCGG.................................................................................................................................................................................................................................................................................................TTGTGGGTATGATCAAGAAGTCCCAGCCTCTGAGCATGCACCTTATACGGATGGAATTCTTGGCCTAGGGAATGGAAAATCAAGCATAGTATCACAGTTGAGTAGCTTGGGTTTTATCCGGAATGTAGTAGGTCACTGTTTAAGCGGGCAAGGTGGAGGTTTTCTTTTCCTTGGAGATGATGTTGTCCCGTCTTCTGGGATTGTTTGGTCACCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208925" ref_strand="+" ref_description="SGN-E208925 [cLEC-38-C13]">
      <seq>ctcaatgtaggccaaccccccaaaccttactttcttgacattgacacagggagtgatctcacttggctccaatgtgacgcaccttgtgtcaaatgtattccagcacctcacagtccgtacaaaccgaataaaaatgttatcaagcataaggatcccatttgtgcatcccttcactcacctgcaaaccatccccgttacagtcctgacgatcaatgtgactatgaggttgagtatgcggatcattgttcatccttgggagtgctggtcagagacgcatttccagtaaaattcaccaacggtagctccattgctcctcctctggtgttcggttgtgggtatgatcaagaagtcccagcctctgagcatgcaccttatacggatggaattcttggcctagggaatggaaaatcaagcatagtatcacagttgagtagcttgggttttatccggaatgtagtaggtcactgtttaagcgggcaaggtggaggttttcttttcctttgagatgatgttgtcccgtcttctggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="106544" stop="108103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106844" g_stop="106945" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106946" i_stop="107087" i_length="142">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107088" g_stop="107314" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="329" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107315" i_stop="107603" i_length="289">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107604" g_stop="107803" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="529" r_length="200" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E208925" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106844" e_stop="106945"/>
          <exon e_start="107088" e_stop="107314"/>
          <exon e_start="107604" e_stop="107803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATGTAGGCCAACCCCCCAAACCTTACTTTCTTGACATTGACACAGGGAGTGATCTCACTTGGCTCCAATGTGACGCACCTTGTGTCAAATGTATTCCAGTGAGTACATCTTTTTATTCCTTCTGCAGCCTAGCTCTTTCAAGTTACACGGAAGATTATTAATATGAATTCAAATCCAAAATCATATGTAAGTTGTCAGAAATATATTTCCTAATTTCTGCATATATGTATGACATTACAGGCACCTCACAGTCCGTACAAACCGAATAAAAATGTTATCAAGCATAAGGATCCCATTTGTGCATCCCTTCACTCACCTGCAAACCATCCCCGTTACAGTCCTGACGATCAATGTGACTATGAGGTTGAGTATGCGGATCATTGTTCATCCTTGGGAGTGCTGGTCAGAGACGCATTTCCAGTAAAATTCACCAACGGTAGCTCCATTGCTCCTCCTCTGGTGTTCGGGTAAGAAGCTGATAAACACTCCTTAAAACTTAACCTTTAAAATTGTCAACCAACAAAGAGAATGTTACTTCTCCACTTTCACTGCTAAAAAGATTGGAATCACAACGGAGAAATCTGTTGCTATTTCTATTTAGCAACGAGTTAGGGACGGATTATCAAAAAAAAATTGCTAGCTACGAGCAGTTTAGTGATGAAGTTTGTTGCTAATTCTAGTTTTTTTTTTGTAGTGTTTATTCTGTTACTGAAATTGTGGTGCTTGTGATTCATGAGTTTGATTTCCCTTCTGTAGTTGTGGGTATGATCAAGAAGTCCCAGCCTCTGAGCATGCACCTTATACGGATGGAATTCTTGGCCTAGGGAATGGAAAATCAAGCATAGTATCACAGTTGAGTAGCTTGGGTTTTATCCGGAATGTAGTAGGTCACTGTTTAAGCGGGCAAGGTGGAGGTTTTCTTTTCCTTGGAGATGATGTTGTCCCGTCTTCTGGGA</genome_strand>
        <mrna_strand>CTCAATGTAGGCCAACCCCCCAAACCTTACTTTCTTGACATTGACACAGGGAGTGATCTCACTTGGCTCCAATGTGACGCACCTTGTGTCAAATGTATTCCA..............................................................................................................................................GCACCTCACAGTCCGTACAAACCGAATAAAAATGTTATCAAGCATAAGGATCCCATTTGTGCATCCCTTCACTCACCTGCAAACCATCCCCGTTACAGTCCTGACGATCAATGTGACTATGAGGTTGAGTATGCGGATCATTGTTCATCCTTGGGAGTGCTGGTCAGAGACGCATTTCCAGTAAAATTCACCAACGGTAGCTCCATTGCTCCTCCTCTGGTGTTCGG.................................................................................................................................................................................................................................................................................................TTGTGGGTATGATCAAGAAGTCCCAGCCTCTGAGCATGCACCTTATACGGATGGAATTCTTGGCCTAGGGAATGGAAAATCAAGCATAGTATCACAGTTGAGTAGCTTGGGTTTTATCCGGAATGTAGTAGGTCACTGTTTAAGCGGGCAAGGTGGAGGTTTTCTTTTCCTTTGAGATGATGTTGTCCCGTCTTCTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E401392" ref_strand="+" ref_description="SGN-E401392 [PPC-4-C23]">
      <seq>tagacacagggagtgatctcacttggctccaatgtgacgcaccttgtgtaaaatgtattccagcacctcacagtccgtacaaaccgaataaaaatgttgtcaagcataaggatcccatatgtgcatcacttcactcacctgcaaaccatccccgtcacactcctgacgatcaatgtgactatgaggttgagtatgcggatcattgttcatccttgggagtgctggtcagagacgcatttccagtaaaattcaccaatgggagctccattgctcctcctctggtgtttggttgtgggtatgatcaagaagtgccagcctctgagcatgcaccttatacggatggaattcttggcctaggaaatggaaaatcaagcatagtatcacagttgagtagcttgggttttatccggaatgtagtaggtcactgtttaagcgggcaaggtggaggttttcttttccttggagatgatgttgtcccgtcttctgggattgtttggtcacctatcgtccgtgaatcttcagaagaacactattctttgggaccggcagatctccttttcggtgggcaggcaactggaataaagggtctaccgataattttagacagtggaagtacctttacctacttcattccaaagcttacaagctctgttgttttcgattaagaaaacatagacgcaaagcagctgactgatgcagtgaacgacaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="106586" stop="108498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106884" g_stop="106945" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106946" i_stop="107087" i_length="142">
            <donor d_prob="0.965" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107088" g_stop="107314" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="289" r_length="227" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107315" i_stop="107603" i_length="289">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.894" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107604" g_stop="107837" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="523" r_length="234" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107838" i_stop="107930" i_length="93">
            <donor d_prob="0.605" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107931" g_stop="108069" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="660" r_length="137" r_score="0.914"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108070" i_stop="108145" i_length="76">
            <donor d_prob="0.952" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="108146" g_stop="108198" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="661" r_stop="712" r_length="52" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E401392" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E401392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106884" e_stop="106945"/>
          <exon e_start="107088" e_stop="107314"/>
          <exon e_start="107604" e_stop="107837"/>
          <exon e_start="107931" e_stop="108069"/>
          <exon e_start="108146" e_stop="108198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACACAGGGAGTGATCTCACTTGGCTCCAATGTGACGCACCTTGTGTCAAATGTATTCCAGTGAGTACATCTTTTTATTCCTTCTGCAGCCTAGCTCTTTCAAGTTACACGGAAGATTATTAATATGAATTCAAATCCAAAATCATATGTAAGTTGTCAGAAATATATTTCCTAATTTCTGCATATATGTATGACATTACAGGCACCTCACAGTCCGTACAAACCGAATAAAAATGTTATCAAGCATAAGGATCCCATTTGTGCATCCCTTCACTCACCTGCAAACCATCCCCGTTACAGTCCTGACGATCAATGTGACTATGAGGTTGAGTATGCGGATCATTGTTCATCCTTGGGAGTGCTGGTCAGAGACGCATTTCCAGTAAAATTCACCAACGGTAGCTCCATTGCTCCTCCTCTGGTGTTCGGGTAAGAAGCTGATAAACACTCCTTAAAACTTAACCTTTAAAATTGTCAACCAACAAAGAGAATGTTACTTCTCCACTTTCACTGCTAAAAAGATTGGAATCACAACGGAGAAATCTGTTGCTATTTCTATTTAGCAACGAGTTAGGGACGGATTATCAAAAAAAAATTGCTAGCTACGAGCAGTTTAGTGATGAAGTTTGTTGCTAATTCTAGTTTTTTTTTTGTAGTGTTTATTCTGTTACTGAAATTGTGGTGCTTGTGATTCATGAGTTTGATTTCCCTTCTGTAGTTGTGGGTATGATCAAGAAGTCCCAGCCTCTGAGCATGCACCTTATACGGATGGAATTCTTGGCCTAGGGAATGGAAAATCAAGCATAGTATCACAGTTGAGTAGCTTGGGTTTTATCCGGAATGTAGTAGGTCACTGTTTAAGCGGGCAAGGTGGAGGTTTTCTTTTCCTTGGAGATGATGTTGTCCCGTCTTCTGGGATTGTTTGGTCACCTATCGTCTGTGAATCTTCAGAGTACGTTTTATCTGTAGTTGGCGCTTTTGTATATGAAAATTTGCACTTAGCATGCAAGATGTGAATAAACTTTCTGGATTACTATCGTTTCAGGAAACATTATTCTTTGGGACCGGCAGATCTCCTTTTTGGTGGGCAGGCAACTGGGATGAAGAGTCTACCGATAATTTTAGACAGTGGAAGTACCTTTACCTACTTCAATTCCGAAGCTTACAAAACTCTGTTGTCTTCGGTAAGATCAGAAAAAAACTACATCATATATGCTTATCATCTTTTTGGCTTAGGACTTACAATATTTCTGATTTCAGATTAAGAAAAACATAGATGCAAAGCAGCTGACTGATGCAGTGAACGACAAAAG</genome_strand>
        <mrna_strand>TAGACACAGGGAGTGATCTCACTTGGCTCCAATGTGACGCACCTTGTGTAAAATGTATTCCA..............................................................................................................................................GCACCTCACAGTCCGTACAAACCGAATAAAAATGTTGTCAAGCATAAGGATCCCATATGTGCATCACTTCACTCACCTGCAAACCATCCCCGTCACACTCCTGACGATCAATGTGACTATGAGGTTGAGTATGCGGATCATTGTTCATCCTTGGGAGTGCTGGTCAGAGACGCATTTCCAGTAAAATTCACCAATGGGAGCTCCATTGCTCCTCCTCTGGTGTTTGG.................................................................................................................................................................................................................................................................................................TTGTGGGTATGATCAAGAAGTGCCAGCCTCTGAGCATGCACCTTATACGGATGGAATTCTTGGCCTAGGAAATGGAAAATCAAGCATAGTATCACAGTTGAGTAGCTTGGGTTTTATCCGGAATGTAGTAGGTCACTGTTTAAGCGGGCAAGGTGGAGGTTTTCTTTTCCTTGGAGATGATGTTGTCCCGTCTTCTGGGATTGTTTGGTCACCTATCGTCCGTGAATCTTCAGA.............................................................................................AGAACACTATTCTTTGGGACCGGCAGATCTCCTTTTCGGTGGGCAGGCAACTGGAATAAAGGGTCTACCGATAATTTTAGACAGTGGAAGTACCTTTACCTACTTC-ATTCCAAAGCTTAC-AAGCTCTGTTGTTTTCG............................................................................ATTAAG-AAAACATAGACGCAAAGCAGCTGACTGATGCAGTGAACGACAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286588" ref_strand="+" ref_description="SGN-E286588 [cLES-12-M23]">
      <seq>tccgtacaaaccgaataaaaatgttatcaagcataaggatcccatttgtgcatcccttcactcacctgcaaaccatccccgttacagtcctgacgatcaatgtgactatgaggttgagtatgcggatcattgttcatccttgggagtgctggtcagagacgcattttcagccaaattcaccaacggtagctccattgctcctcctctggtgttcggttgtgggtatgatcaagaagtcccagcctatgagcatgcaccttatacggatggaattcttggcctagggaatggaaaatcaagcatagtatcacagttgagtagcttgggttttatccggaatgtagtatgtcactgtttaagcgggcaaggtggaggttctcttttccttggagatgatgttgtcccgtcttctgggattgtttggtcacctatcgtctgtgaatcttcagagaaacattattctttgggaccggcagatctcctttttggtgggcaggcaactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="106799" stop="108284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107099" g_stop="107314" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107315" i_stop="107603" i_length="289">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.894" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107604" g_stop="107837" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="450" r_length="234" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107838" i_stop="107930" i_length="93">
            <donor d_prob="0.605" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107931" g_stop="107984" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="504" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E286588" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107099" e_stop="107314"/>
          <exon e_start="107604" e_stop="107837"/>
          <exon e_start="107931" e_stop="107984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGTACAAACCGAATAAAAATGTTATCAAGCATAAGGATCCCATTTGTGCATCCCTTCACTCACCTGCAAACCATCCCCGTTACAGTCCTGACGATCAATGTGACTATGAGGTTGAGTATGCGGATCATTGTTCATCCTTGGGAGTGCTGGTCAGAGACGCATTTCCAGTAAAATTCACCAACGGTAGCTCCATTGCTCCTCCTCTGGTGTTCGGGTAAGAAGCTGATAAACACTCCTTAAAACTTAACCTTTAAAATTGTCAACCAACAAAGAGAATGTTACTTCTCCACTTTCACTGCTAAAAAGATTGGAATCACAACGGAGAAATCTGTTGCTATTTCTATTTAGCAACGAGTTAGGGACGGATTATCAAAAAAAAATTGCTAGCTACGAGCAGTTTAGTGATGAAGTTTGTTGCTAATTCTAGTTTTTTTTTTGTAGTGTTTATTCTGTTACTGAAATTGTGGTGCTTGTGATTCATGAGTTTGATTTCCCTTCTGTAGTTGTGGGTATGATCAAGAAGTCCCAGCCTCTGAGCATGCACCTTATACGGATGGAATTCTTGGCCTAGGGAATGGAAAATCAAGCATAGTATCACAGTTGAGTAGCTTGGGTTTTATCCGGAATGTAGTAGGTCACTGTTTAAGCGGGCAAGGTGGAGGTTTTCTTTTCCTTGGAGATGATGTTGTCCCGTCTTCTGGGATTGTTTGGTCACCTATCGTCTGTGAATCTTCAGAGTACGTTTTATCTGTAGTTGGCGCTTTTGTATATGAAAATTTGCACTTAGCATGCAAGATGTGAATAAACTTTCTGGATTACTATCGTTTCAGGAAACATTATTCTTTGGGACCGGCAGATCTCCTTTTTGGTGGGCAGGCAACTGG</genome_strand>
        <mrna_strand>TCCGTACAAACCGAATAAAAATGTTATCAAGCATAAGGATCCCATTTGTGCATCCCTTCACTCACCTGCAAACCATCCCCGTTACAGTCCTGACGATCAATGTGACTATGAGGTTGAGTATGCGGATCATTGTTCATCCTTGGGAGTGCTGGTCAGAGACGCATTTTCAGCCAAATTCACCAACGGTAGCTCCATTGCTCCTCCTCTGGTGTTCGG.................................................................................................................................................................................................................................................................................................TTGTGGGTATGATCAAGAAGTCCCAGCCTATGAGCATGCACCTTATACGGATGGAATTCTTGGCCTAGGGAATGGAAAATCAAGCATAGTATCACAGTTGAGTAGCTTGGGTTTTATCCGGAATGTAGTATGTCACTGTTTAAGCGGGCAAGGTGGAGGTTCTCTTTTCCTTGGAGATGATGTTGTCCCGTCTTCTGGGATTGTTTGGTCACCTATCGTCTGTGAATCTTCAGA.............................................................................................GAAACATTATTCTTTGGGACCGGCAGATCTCCTTTTTGGTGGGCAGGCAACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213900" ref_strand="+" ref_description="SGN-E213900 [cLEC-76-L22]">
      <seq>tcaatgtgactatgaggttgagtatgcggatcattgttcatccttgggagtgctggtcagagacgcatttccagtaaaattcaccaacggtagctccattgctcctcctctggtgttcggttgtgggtatgatcaagaagtcccagcctctgagcatgcaccttatacggatggaattcttggcctagggaatggaaaatcaagcatagtatcacagttgagtagcttgggttttatccggaatgtagtaggtcactgtttaagcgggcaaggtggaggttttcttttccttggagatgatgttgtcccgtcttctgggattgtttggtcacctatcgtccgtgaatcttcagagaaacattattctttgggaccggcagatctcctttttggtgggcaggcaactgggatgaagagtctaccgataattttagacagtggaagtacctttacctacttcaattccgaagcttacaaaactctgttgtcttcgattaagaaaaacatagatgcaaagcagctgactgatgcagtgaacgacaaaagtttgcccgtctgctggaaaggctccaaacctttcaaatcccttaaagatgctacgaggtacttcaagccattgacacttagtttcacaaaagctaagaatattcagcttncactgacacccgaagcttatcttattcatactaataagggcaatgtatgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="106895" stop="108747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107195" g_stop="107314" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107315" i_stop="107603" i_length="289">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107604" g_stop="107837" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="354" r_length="234" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107838" i_stop="107930" i_length="93">
            <donor d_prob="0.605" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107931" g_stop="108069" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="493" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108070" i_stop="108145" i_length="76">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108146" g_stop="108340" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="688" r_length="195" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108341" i_stop="108427" i_length="87">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.916" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="108428" g_stop="108447" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="689" r_stop="708" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E213900" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107195" e_stop="107314"/>
          <exon e_start="107604" e_stop="107837"/>
          <exon e_start="107931" e_stop="108069"/>
          <exon e_start="108146" e_stop="108340"/>
          <exon e_start="108428" e_stop="108447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGTGACTATGAGGTTGAGTATGCGGATCATTGTTCATCCTTGGGAGTGCTGGTCAGAGACGCATTTCCAGTAAAATTCACCAACGGTAGCTCCATTGCTCCTCCTCTGGTGTTCGGGTAAGAAGCTGATAAACACTCCTTAAAACTTAACCTTTAAAATTGTCAACCAACAAAGAGAATGTTACTTCTCCACTTTCACTGCTAAAAAGATTGGAATCACAACGGAGAAATCTGTTGCTATTTCTATTTAGCAACGAGTTAGGGACGGATTATCAAAAAAAAATTGCTAGCTACGAGCAGTTTAGTGATGAAGTTTGTTGCTAATTCTAGTTTTTTTTTTGTAGTGTTTATTCTGTTACTGAAATTGTGGTGCTTGTGATTCATGAGTTTGATTTCCCTTCTGTAGTTGTGGGTATGATCAAGAAGTCCCAGCCTCTGAGCATGCACCTTATACGGATGGAATTCTTGGCCTAGGGAATGGAAAATCAAGCATAGTATCACAGTTGAGTAGCTTGGGTTTTATCCGGAATGTAGTAGGTCACTGTTTAAGCGGGCAAGGTGGAGGTTTTCTTTTCCTTGGAGATGATGTTGTCCCGTCTTCTGGGATTGTTTGGTCACCTATCGTCTGTGAATCTTCAGAGTACGTTTTATCTGTAGTTGGCGCTTTTGTATATGAAAATTTGCACTTAGCATGCAAGATGTGAATAAACTTTCTGGATTACTATCGTTTCAGGAAACATTATTCTTTGGGACCGGCAGATCTCCTTTTTGGTGGGCAGGCAACTGGGATGAAGAGTCTACCGATAATTTTAGACAGTGGAAGTACCTTTACCTACTTCAATTCCGAAGCTTACAAAACTCTGTTGTCTTCGGTAAGATCAGAAAAAAACTACATCATATATGCTTATCATCTTTTTGGCTTAGGACTTACAATATTTCTGATTTCAGATTAAGAAAAACATAGATGCAAAGCAGCTGACTGATGCAGTGAACGACAAAAGTTTGCCCGTCTGCTGGAAAGGCTCCAAACCTTTCAAATCCCTTAAAGATGCTACGAGGTACTTCAAGCCATTGACACTTAGTTTCACAAAAGCTAAGAATATTCAGCTTCAACTGACACCCGAAGCTTATCTTATTCATACTGTAAGTGCTCTTGAAATCACTCCGTGAATCTTATAATGCAGCTTAAAAGTATAGCACATCATGATACTGATATTTGTATCCTCTCAGAATAAGGGCAATGTATGCTT</genome_strand>
        <mrna_strand>TCAATGTGACTATGAGGTTGAGTATGCGGATCATTGTTCATCCTTGGGAGTGCTGGTCAGAGACGCATTTCCAGTAAAATTCACCAACGGTAGCTCCATTGCTCCTCCTCTGGTGTTCGG.................................................................................................................................................................................................................................................................................................TTGTGGGTATGATCAAGAAGTCCCAGCCTCTGAGCATGCACCTTATACGGATGGAATTCTTGGCCTAGGGAATGGAAAATCAAGCATAGTATCACAGTTGAGTAGCTTGGGTTTTATCCGGAATGTAGTAGGTCACTGTTTAAGCGGGCAAGGTGGAGGTTTTCTTTTCCTTGGAGATGATGTTGTCCCGTCTTCTGGGATTGTTTGGTCACCTATCGTCCGTGAATCTTCAGA.............................................................................................GAAACATTATTCTTTGGGACCGGCAGATCTCCTTTTTGGTGGGCAGGCAACTGGGATGAAGAGTCTACCGATAATTTTAGACAGTGGAAGTACCTTTACCTACTTCAATTCCGAAGCTTACAAAACTCTGTTGTCTTCG............................................................................ATTAAGAAAAACATAGATGCAAAGCAGCTGACTGATGCAGTGAACGACAAAAGTTTGCCCGTCTGCTGGAAAGGCTCCAAACCTTTCAAATCCCTTAAAGATGCTACGAGGTACTTCAAGCCATTGACACTTAGTTTCACAAAAGCTAAGAATATTCAGCTTNCACTGACACCCGAAGCTTATCTTATTCATACT.......................................................................................AATAAGGGCAATGTATGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E612006" ref_strand="+" ref_description="SGN-E612006 [61764]">
      <seq>tgagcatgcaccttatacggatggaattcttggcctaggaaatggaaaatcaagcatagtatcacagttgagtagcttgggttttatccggaatgtagtaggtcactgtttaagcgggcaaggtggaggttttcttttccttggagatgatgttgtcccgtcttctgggattgtttggtcacctatcgtccgtgaatcttcagagaaacactattctttgggaccggcagatctccttttcggtgggcaggcaactggaataaagggtctaccgataattttagacagtggaagtacctttacctacttcaattccaaagcttacaaagctctgttgttttcgattaagaaaaacatagacgcaaagcagctgactgatgcagtgaacgacaaaagtttgcccgtctgctggaaaggctccaaacctttcaaatcccttatagatgctacgaggtacttcaagccattgacacttagtttcacaaaagctaagaatattcagcttcaactgacaccggaggcttatcttattcatactgataagggcaatgtatgcttagggatattgaatggttcggaggttggattaggagatgttaatatcatcggagatatttctatgttagacaaaatggtgatttacgacaacaaaaaacagcagattggatgggttccagcaaactgcaacaagcttccatcgtaatcctgaatatatcaactgattacagtgaacattttggtggcatatcataggaagaagcaggcagaaagtatgtcagtatttgcaagcataccaatgttttgctatatttacaggaagaacataattttagttgatttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="107334" stop="109281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107634" g_stop="107837" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107838" i_stop="107930" i_length="93">
            <donor d_prob="0.605" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107931" g_stop="108069" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="343" r_length="139" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108070" i_stop="108145" i_length="76">
            <donor d_prob="0.952" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108146" g_stop="108340" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="538" r_length="195" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108341" i_stop="108427" i_length="87">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.916" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108428" g_stop="108500" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="611" r_length="73" r_score="0.945"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108501" i_stop="108687" i_length="187">
            <donor d_prob="0.421" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="108688" g_stop="108784" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="708" r_length="97" r_score="0.959"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="108785" i_stop="108875" i_length="91">
            <donor d_prob="0.651" d_score="0.94"/>
            <acceptor a_prob="0.854" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108876" g_stop="108949" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="709" r_stop="783" r_length="75" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E612006" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E612006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107634" e_stop="107837"/>
          <exon e_start="107931" e_stop="108069"/>
          <exon e_start="108146" e_stop="108340"/>
          <exon e_start="108428" e_stop="108500"/>
          <exon e_start="108688" e_stop="108784"/>
          <exon e_start="108876" e_stop="108949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCATGCACCTTATACGGATGGAATTCTTGGCCTAGGGAATGGAAAATCAAGCATAGTATCACAGTTGAGTAGCTTGGGTTTTATCCGGAATGTAGTAGGTCACTGTTTAAGCGGGCAAGGTGGAGGTTTTCTTTTCCTTGGAGATGATGTTGTCCCGTCTTCTGGGATTGTTTGGTCACCTATCGTCTGTGAATCTTCAGAGTACGTTTTATCTGTAGTTGGCGCTTTTGTATATGAAAATTTGCACTTAGCATGCAAGATGTGAATAAACTTTCTGGATTACTATCGTTTCAGGAAACATTATTCTTTGGGACCGGCAGATCTCCTTTTTGGTGGGCAGGCAACTGGGATGAAGAGTCTACCGATAATTTTAGACAGTGGAAGTACCTTTACCTACTTCAATTCCGAAGCTTACAAAACTCTGTTGTCTTCGGTAAGATCAGAAAAAAACTACATCATATATGCTTATCATCTTTTTGGCTTAGGACTTACAATATTTCTGATTTCAGATTAAGAAAAACATAGATGCAAAGCAGCTGACTGATGCAGTGAACGACAAAAGTTTGCCCGTCTGCTGGAAAGGCTCCAAACCTTTCAAATCCCTTAAAGATGCTACGAGGTACTTCAAGCCATTGACACTTAGTTTCACAAAAGCTAAGAATATTCAGCTTCAACTGACACCCGAAGCTTATCTTATTCATACTGTAAGTGCTCTTGAAATCACTCCGTGAATCTTATAATGCAGCTTAAAAGTATAGCACATCATGATACTGATATTTGTATCCTCTCAGAATAAGGGCAATGTATGCTTAGGGATACTGAACGGTTCGGAGGTTGGATTAGGAGCTGTTAATATCATCGGAGGTATGACAAAACGAGGCACCTTTCGTTTTGTGCTGTTCAAAATTTTTGAGGTTGTTTTCTCCCAAGAAAATATACAACAAAAGAACACACACAACCAACATTTATCCGAGGAGAAGCACATCAGTATCGAAATTGTTGTCCACATTTTAACCTTCTTTCCACATTTTCTCTGGGTTTGCTTATGCAGATATTTCTATGTTAGACAAAATGGTGATTTACGACAACGAAAAACAGCAGATTGGATGGGTTCCCGCAAACTGCAACAAGCTTCCATCGTTGTCCTGGTAGGTCGTCCGAACATACGTTTATCTTGCTTGTTCATATTACTGCTGCTACGGATTTCACTCGACACCATCTTTGTTCTTGTGTTAACAGAATATATCAA-TGATTACAGTGAAAATTTTGGTGACATACCATAGGAAGAAGCAAGCAGAAAGTATGTCAGTATT</genome_strand>
        <mrna_strand>TGAGCATGCACCTTATACGGATGGAATTCTTGGCCTAGGAAATGGAAAATCAAGCATAGTATCACAGTTGAGTAGCTTGGGTTTTATCCGGAATGTAGTAGGTCACTGTTTAAGCGGGCAAGGTGGAGGTTTTCTTTTCCTTGGAGATGATGTTGTCCCGTCTTCTGGGATTGTTTGGTCACCTATCGTCCGTGAATCTTCAGA.............................................................................................GAAACACTATTCTTTGGGACCGGCAGATCTCCTTTTCGGTGGGCAGGCAACTGGAATAAAGGGTCTACCGATAATTTTAGACAGTGGAAGTACCTTTACCTACTTCAATTCCAAAGCTTACAAAGCTCTGTTGTTTTCG............................................................................ATTAAGAAAAACATAGACGCAAAGCAGCTGACTGATGCAGTGAACGACAAAAGTTTGCCCGTCTGCTGGAAAGGCTCCAAACCTTTCAAATCCCTTATAGATGCTACGAGGTACTTCAAGCCATTGACACTTAGTTTCACAAAAGCTAAGAATATTCAGCTTCAACTGACACCGGAGGCTTATCTTATTCATACT.......................................................................................GATAAGGGCAATGTATGCTTAGGGATATTGAATGGTTCGGAGGTTGGATTAGGAGATGTTAATATCATCGGAG...........................................................................................................................................................................................ATATTTCTATGTTAGACAAAATGGTGATTTACGACAACAAAAAACAGCAGATTGGATGGGTTCCAGCAAACTGCAACAAGCTTCCATCGTAATCCTG...........................................................................................AATATATCAACTGATTACAGTGAACATTTTGGTGGCATATCATAGGAAGAAGCAGGCAGAAAGTATGTCAGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238614" ref_strand="+" ref_description="SGN-E238614 [cLED-17-L24]">
      <seq>tattctttgggaccggcagatctcctttttggtgggcaggcaactgggatgaagagtctaccgataattttagacagtggaagtacctttacctacttcaattccgaagcttacaaaactctgttgtcttcgattaagaaaaacatagatgcaaagcagctgactgatgcagtgaacgacaaaagtttgcccgtctgctggaaaggctccaaacctttcaaatcccttaaagatgctacgaggtacttcaagccattgacacttagtttcacaaaagctaagaatattcagcttcaactgacacccgaagcttatcttattcatactaataagggcaatgtatgcttagggatactgaacggttcggaggttggattaagagctgttaatatcatcggagatatttctatgttagacaaaatggtgatttacgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="107638" stop="109022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107938" g_stop="108069" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108070" i_stop="108145" i_length="76">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108146" g_stop="108340" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="327" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108341" i_stop="108427" i_length="87">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108428" g_stop="108500" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="400" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108501" i_stop="108687" i_length="187">
            <donor d_prob="0.421" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108688" g_stop="108722" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="435" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E238614" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107938" e_stop="108069"/>
          <exon e_start="108146" e_stop="108340"/>
          <exon e_start="108428" e_stop="108500"/>
          <exon e_start="108688" e_stop="108722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTCTTTGGGACCGGCAGATCTCCTTTTTGGTGGGCAGGCAACTGGGATGAAGAGTCTACCGATAATTTTAGACAGTGGAAGTACCTTTACCTACTTCAATTCCGAAGCTTACAAAACTCTGTTGTCTTCGGTAAGATCAGAAAAAAACTACATCATATATGCTTATCATCTTTTTGGCTTAGGACTTACAATATTTCTGATTTCAGATTAAGAAAAACATAGATGCAAAGCAGCTGACTGATGCAGTGAACGACAAAAGTTTGCCCGTCTGCTGGAAAGGCTCCAAACCTTTCAAATCCCTTAAAGATGCTACGAGGTACTTCAAGCCATTGACACTTAGTTTCACAAAAGCTAAGAATATTCAGCTTCAACTGACACCCGAAGCTTATCTTATTCATACTGTAAGTGCTCTTGAAATCACTCCGTGAATCTTATAATGCAGCTTAAAAGTATAGCACATCATGATACTGATATTTGTATCCTCTCAGAATAAGGGCAATGTATGCTTAGGGATACTGAACGGTTCGGAGGTTGGATTAGGAGCTGTTAATATCATCGGAGGTATGACAAAACGAGGCACCTTTCGTTTTGTGCTGTTCAAAATTTTTGAGGTTGTTTTCTCCCAAGAAAATATACAACAAAAGAACACACACAACCAACATTTATCCGAGGAGAAGCACATCAGTATCGAAATTGTTGTCCACATTTTAACCTTCTTTCCACATTTTCTCTGGGTTTGCTTATGCAGATATTTCTATGTTAGACAAAATGGTGATTTACGAC</genome_strand>
        <mrna_strand>TATTCTTTGGGACCGGCAGATCTCCTTTTTGGTGGGCAGGCAACTGGGATGAAGAGTCTACCGATAATTTTAGACAGTGGAAGTACCTTTACCTACTTCAATTCCGAAGCTTACAAAACTCTGTTGTCTTCG............................................................................ATTAAGAAAAACATAGATGCAAAGCAGCTGACTGATGCAGTGAACGACAAAAGTTTGCCCGTCTGCTGGAAAGGCTCCAAACCTTTCAAATCCCTTAAAGATGCTACGAGGTACTTCAAGCCATTGACACTTAGTTTCACAAAAGCTAAGAATATTCAGCTTCAACTGACACCCGAAGCTTATCTTATTCATACT.......................................................................................AATAAGGGCAATGTATGCTTAGGGATACTGAACGGTTCGGAGGTTGGATTAAGAGCTGTTAATATCATCGGAG...........................................................................................................................................................................................ATATTTCTATGTTAGACAAAATGGTGATTTACGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544929" ref_strand="+" ref_description="SGN-E544929 [TUS-67-I7](-)">
      <seq>caaactgcaacaagcttccatcgttgtcctgaatatatcaatgattacagtgaaaattttggtgacataccataggaagaagcaagcagaaagtatgtcagtattgtaagcataccaatgtttgctatattacagcatattttagtttgatttgtaatacagaaaattcactgtaatcacccatatatatatatatataacagccttatatgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="108454" stop="134055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108754" g_stop="108784" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108785" i_stop="108875" i_length="91">
            <donor d_prob="0.651" d_score="0.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108876" g_stop="109057" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="213" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109058" i_stop="109448" i_length="391">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109449" g_stop="109483" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="247" r_length="34" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E544929" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>248</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108754" e_stop="108784"/>
          <exon e_start="108876" e_stop="109057"/>
          <exon e_start="109449" e_stop="109483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTGCAACAAGCTTCCATCGTTGTCCTGGTAGGTCGTCCGAACATACGTTTATCTTGCTTGTTCATATTACTGCTGCTACGGATTTCACTCGACACCATCTTTGTTCTTGTGTTAACAGAATATATCAATGATTACAGTGAAAATTTTGGTGACATACCATAGGAAGAAGCAAGCAGAAAGTATGTCAGTATTGTAAGCATACCAATGTTTGCTATATTACAGCATATTTTAGTTTGATTTGTAATACAGAAAATTCACTGTAATCACCCATATATATATATATATAACAGCCTTATATGTATATTCAGTCCATCCCCAAATTTGTCTTCTTCTATATTTACTAGCAGGTGATTACCCGTGCCAGCGAGCCCAATTTCCTGAAAACAAATTCTTTTTTATTTTATTTTGATACAATTATCAGAAAGTAGTTTGATACATGTTAACTTTAGACCAGATGATCATCGTTATGCTGATTACGGAACGCTATGAACATGAAATTTTAAGAAAATATTTTTGCTTGAATGCTATATGCTTTGAACATCTTTACAACACAACGGTGCAAAAATAAATAAAACGTTGTGTCGTACTGATGATCAATGTTTTTTCAACAATGAATATGTCGCTAACACTCCTTTGTTTTAACATCTGCCCAAAAAAAAGAAGTAAAACATAAGTAGCAATTTAGATATAGAAAGTCAAAAGTAAAATAGAAAAACAAATAAGAGA</genome_strand>
        <mrna_strand>CAAACTGCAACAAGCTTCCATCGTTGTCCTG...........................................................................................AATATATCAATGATTACAGTGAAAATTTTGGTGACATACCATAGGAAGAAGCAAGCAGAAAGTATGTCAGTATTGTAAGCATACCAATGTTTGCTATATTACAGCATATTTTAGTTTGATTTGTAATACAGAAAATTCACTGTAATCACCCATATATATATATATATAACAGCCTTATATGT.......................................................................................................................................................................................................................................................................................................................................................................................................AAA-AAAAAAAAAAAAAAAAAAAAAAAAAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 [cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="132198" stop="131152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131898" g_stop="131452" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131898" e_stop="131452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATAACAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTTGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAA-TTATACACTTTTGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTCTTGGGAGAGAGACG-CTGACAAATTTTAGCTAATGTTTGCTATGGAGCACAATTAAATCAAACCCTAGCTATTTCATTTAATTTAAGTTATTAG</genome_strand>
        <mrna_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTT-AGTTAGATTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="132199" stop="130385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131899" g_stop="131578" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131899" e_stop="131578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAACAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTTGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAA-TTATACACTTTTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="132199" stop="131304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131899" g_stop="131594" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131899" e_stop="131594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAACAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTTGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAATTATACACTTTTGT</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAGGTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355114" ref_strand="+" ref_description="SGN-E355114 [cTOS-18-B12]">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="159791" stop="160676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="160091" g_stop="160376" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E355114" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="160091" e_stop="160376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGAAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGACTATAAGACTTTAGGAAAATTCCATTCTTTCTTTCTTTCTTTCGTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACTGCACCAACACCAACACCGGCAAGACAAGGAGCGTCTGAGCCAGCCACTGGGGCTGTAG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="160150" stop="161303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="160450" g_stop="161003" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="160450" e_stop="161003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATCTGATACTAGGGCGGTGACTCCTCCACCGACAGAGGAAGTAGTAAGAGAAGGGGAGGATGGGGAAAACGAACAAGTACAGAATGAGGAATTACCACCCCAACCTACCCCAGAGATGATAAATCAGGTGCTTGCTTATCTTAGTGGGTTATCTGATCAAGGTCAAACACCTTCAGTGTTTTCTGCACTAGCACCTCAGGGTCTGGAAGTACAACAGGCAACTGCTGCGGCTCCCCGCATGGATATTCCATTAGAAATAGGCACGTTTCCTCGCCTGACTACAGGGCCTATAATGACAAATGATCAACATGAACTTTTCAGTAAGTTCTTGAAATTAAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAATGGCTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353359" ref_strand="-" ref_description="SGN-E353359 [cTOS-15-G18]">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="160798" stop="162821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="161077" g_stop="161263" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.888"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="161264" i_stop="162043" i_length="780">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="162044" g_stop="162507" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="651" r_length="464" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E353359" ref_strand="-">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="161077" e_stop="161263"/>
          <exon e_start="162044" e_stop="162507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGCAGGATGTCGGTTTCTGCCTATGAGGCTAAGTTTCGTGCACTCTCCAGGTATGCCACCCAACTGTGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGGTCAGAATTGCAGATTTCAGCCTTACAGATAGCGGCTACGGCAAAATTCTTTCAAGAAGTGGTAGACTTCGTGATAGAGGTGGAAGGAGTGAAGCCAGATGACTTCACCATGGCATCGAAATCAAAAAGGTTTCGAAATGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCAGGAGGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCGCAGACTGGTCTACACTTCTTTGAGTTTGGAGGTTATCCCCAGACTTCGTCATTTTCACAGAGATCTATGCTTGAATCCAGAGAGTGTTATGGATGTGGGGAGACTGGACACATTAAGAGGTATTGTCCAAAACAGAGTTACAGACCTCAAATAGTCAGAGGTAGAGGTGGTCATGGAAGAGGCCGTCATTCTGGAGGGCGTGGTGGCCGAGGTAATGGTGGTCACCAAAACGGTCGGGGTGACGGACAAATGGGAACTACTGCAGCGCAGCCTGGTAGAGGCAACGTGCAGACAGGTGATATGGCCCATTGTTACGCTTTCCCTGGGCGGTCAGAAGCGGAGACATCAGATGTTGTCATCACAGGTAATCTTTTGGTTTGTGATTGCATGGATTTTGTATTATTTGACGCTGGATCCACATTTTCATATATATCTTCCTCATTTGCTACTGGTCTTAAATTAAATTGTGAATTGCTTGACATGCCTATTCATGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAGAAGGTGTATAGGTCTTGTCCTGTGACTTTTATGGAGAGCAATACTTATGTAGACTTGTTTATCTTAGAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGAATTTTGCGATATTGGATTGTAATGCTAAAATTGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTTCGTATCATCTCCTTTCTTCGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGACACTACCCAAGTACCTTCAATTGAGTCGGTTTCGGTAGTCCGTGAGTTTTTAGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGAGATATTGACTTCTGCATCGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAGGCCCAACTTCAAGAGTTGTTAAGTAAAGGTTTCATTAGACCAAGTGCATCCCCTTGGGGTGCTCCAGT</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAGAAATGGTTGACTTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="162837" stop="161479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="162540" g_stop="161779" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="162540" e_stop="161779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAACTCCCATCCTTCTTCTTCACAAATAACACTGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAACCTTTACTTAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCGATGCAGAAGTCAATATCTCTATCCGGTGGCATACCAGGAAGGTCTGCAGGAAACACATCTAAAAACTCACGGACTACCGAAACCGACTCAATTGAAGGTACTTGGGTAGTGTCATCCCTGAGGTGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTCTCTTAGCACGAAGAAAGGAGATGATACGAACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACAATTTTAGCATTACAATCCAATATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAAACAAGTCTACATAAGTATTGCTCTCCATAAAAGTCACAGGACAAGACCTATACACCTTCTCAACTATCACAGACTCACCCACCGGAGTAGAAACATGAATAGGCATGTCAAGCAATTCACAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATATATATGAAAATGTGGATCCAGCGTCAAATAATACAAAATCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCTGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATCAACAATACAGAAGCCATGCAATCAC-AATCGAAAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="162437" stop="161507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="162137" g_stop="161807" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="162137" e_stop="161807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAATTTTAGCATTACAATCCAATATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAAACAAGTCTACATAAGTATTGCTCTCCATAAAAGTCACAGGACAAGACCTATACACCTTCTCAACTATCACAGACTCACCCACCGGAGTAGAAACATGAATAGGCATGTCAAGCAATTCACAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATATATATGAAAATGTGGATCCAGCGTCAAATAATACAAAATCCATGCAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352117" ref_strand="+" ref_description="SGN-E352117 [cTOS-13-N24]">
      <seq>tttgatcctgcctccacattttcatatgtatcttcctcatttgctactgttcttaatttacatagtgaatcgcttgacatacctattcgtgttctactccggtgggtgagtctgtgattgttgaaaaggtgtataggtcttgtcttgtgacatttgtgggagcaatactcatgtagacttggttatcctataaatggttgacttcgatgtaattctgggtatgacttggctgtctccaaattttgcaatcttggattgtaatgctaaaactgtaacgttggccaagcctgagatagatgcgttagtgtgggagggtgactacacttccactccagttcgtatcatctcctttctttgtgctaagagaatggttagtaaagggtgtttagctttcttggcacacctcagggatgatactacccaagtaccttcaattgagtcagtttcgatagtccgtgagtttctggatgtgtttcctgcagaccttcctggtatgccaccggatagggatattgacttttgcattgatctggagccgggtgatcaccccatttccatacccccttatagaatggctcccgctgagttgggggagttaaaggcccaacttcaagagttgttangtaagggcttcattangccaagtgcatccccttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="161537" stop="162797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="161837" g_stop="162497" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-E352117" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="161837" e_stop="162497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGACGCTGGATCCACATTTTCATATATATCTTCCTCATTTGCTACTGGTCTTAAATTAAATTGTGAATTGCTTGACATGCCTATTCATGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAGAAGGTGTATAGGTCTTGTCCTGTGACTTTTATGGAGAGCAATACTTATGTAGACTTGTTTATCTTAGAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGAATTTTGCGATATTGGATTGTAATGCTAAAATTGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTTCGTATCATCTCCTTTCTTCGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGACACTACCCAAGTACCTTCAATTGAGTCGGTTTCGGTAGTCCGTGAGTTTTTAGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGAGATATTGACTTCTGCATCGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAGGCCCAACTTCAAGAGTTGTTAAGTAAAGGTTTCATTAGACCAAGTGCATCCCCTTGGG</genome_strand>
        <mrna_strand>TTTGATCCTGCCTCCACATTTTCATATGTATCTTCCTCATTTGCTACTGTTCTTAATTTACATAGTGAATCGCTTGACATACCTATTCGTGTT-CTACTCCGGTGGGTGAGTCTGTGATTGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACATTTGTGG-GAGCAATACTCATGTAGACTTGGTTATCCTATAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTGTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGAGATAGATGCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTTGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCAGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTGATCACCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTGGGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTANGTAAGGGCTTCATTANGCCAAGTGCATCCCCTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="162837" stop="161580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="162540" g_stop="161880" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="162540" e_stop="161880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAACTCCCATCCTTCTTCTTCACAAATAACACTGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAACCTTTACTTAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCGATGCAGAAGTCAATATCTCTATCCGGTGGCATACCAGGAAGGTCTGCAGGAAACACATCTAAAAACTCACGGACTACCGAAACCGACTCAATTGAAGGTACTTGGGTAGTGTCATCCCTGAGGTGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTCTCTTAGCACGAAGAAAGGAGATGATACGAACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACAATTTTAGCATTACAATCCAATATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAAACAAGTCTACATAAGTATTGCTCTCCATAAAAGTCACAGGACAAGACCTATACACCTTCTCAACTATCACAGACTCACCCACCGGAGTAGAAACATGAATAGGCATGTCAAGCAATTCACAATTTAATTTAAGACCAGTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355232" ref_strand="+" ref_description="SGN-E355232 [cTOS-18-A6]">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="162909" stop="161651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="162609" g_stop="161951" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-E355232" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="162609" e_stop="161951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGAGGAAGAGGATACTTATTCTTAACCGTTACCTTATTTAGTTGTCTGTAATCTATGCACATCCTAAAACTCCCATCCTTCTTCTTCACAAATAACACTGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAACCTTTACTTAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCGATGCAGAAGTCAATATCTCTATCCGGTGGCATACCAGGAAGGTCTGCAGGAAACACATCTAAAAACTCACGGACTACCGAAACCGACTCAATTGAAGGTACTTGGGTAGTGTCATCCCTGAGGTGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTCTCTTAGCACGAAGAAAGGAGATGATACGAACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACAATTTTAGCATTACAATCCAATATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAAACAAGTCTACATAAGTATTGCTCTCCATAAAAGTC-ACAGGACAAGACCTATACACCTTCTCAACTATCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAAC-AGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>179</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="9712" PGL_stop="6725"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9712" e_stop="9592"/>
            <exon e_start="8656" e_stop="8493"/>
            <exon e_start="8417" e_stop="8163"/>
            <exon e_start="7788" e_stop="7667"/>
            <exon e_start="7577" e_stop="7456"/>
            <exon e_start="6766" e_stop="6725"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.951" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.776" acc_prob="0.961" e_score="0.992"/>
          <exon-intron don_prob="0.765" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.964" e_score="0.984"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9712" e_stop="9592" e_length="121"/>
          </exon>
          <intron i_serial="1" don_prob="0.951" acc_prob="0.989">
            <gDNA_intron_boundary i_start="9591" i_stop="8657" i_length="935"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8656" e_stop="8493" e_length="164"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.955">
            <gDNA_intron_boundary i_start="8492" i_stop="8418" i_length="75"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="8417" e_stop="8163" e_length="255"/>
          </exon>
          <intron i_serial="3" don_prob="0.776" acc_prob="0.961">
            <gDNA_intron_boundary i_start="8162" i_stop="7789" i_length="374"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7788" e_stop="7667" e_length="122"/>
          </exon>
          <intron i_serial="4" don_prob="0.765" acc_prob="0.971">
            <gDNA_intron_boundary i_start="7666" i_stop="7578" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="0.984">
            <gDNA_exon_boundary e_start="7577" e_stop="7456" e_length="122"/>
          </exon>
          <intron i_serial="5" don_prob="0.960" acc_prob="0.964">
            <gDNA_intron_boundary i_start="7455" i_stop="6767" i_length="689"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="6766" e_stop="6725" e_length="42"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9712" stop="9592"/>
              <exon start="8656" stop="8493"/>
              <exon start="8417" stop="8163"/>
              <exon start="7788" stop="7667"/>
              <exon start="7577" stop="7456"/>
              <exon start="6766" stop="6725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9711" stop="9592"/>
              <exon start="8656" stop="8493"/>
              <exon start="8417" stop="8335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335990" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAATTTGGAAGGACGTGTTAAGGAAGGAAGAATGACTCAAGAGCATTATAAAAAAGCGTGCACGCTTTTAAAGGGTGTTTTGAGCTATGATAACTTCAAAGATGTGGATCTAGTCATAGAG : GACATGCCTGACATTGTGTCCTTGAAGCAGCAATTTTTTGCTGATCTTGATGAATGTTGCCCTCATCACTGCATTTTTGCTTCAACTACTTGTATAGTCAACTTAGATTTGATTGGAGAAAGGATGAAACCATGTAGGGAGATTGTTGGGATCCACTTTTTTAG : CTCACCCTCTGTCACTGATCTCCTGGAAATTGTCCGAACAAAGAGGACATCCCCTCAAACGCTTGTTGATCTGTTAAACTTTGGAAGGAGGATTCAAAAGACTCCTATTGTAGTTCAGAATTGTACAGGTTTTGCAGTCAGACATATGTGCTTCCCCTACTTGCAGGCAGCGATGCTTCTTGTTGAACATGGTGCTGATGTGTATCAGATTGATAAGGCGCTTACCAGCTTTGGGTTGAAACTGGGTCCATTTAG : AATGCTTGATCAAGATGGATTCCTGTCTGCAGCTGTGCATGATGTGAAATTCCTTGAGACTTTTCCAGATAGATCTTACAAATCGAATTTGATTCCAATCATGAGGAAAAATAACGGTGAAG : GTAAATACTCTTGCCAGGGCTTCTACACATACAATGACAAGGAAGAGGCAAGCCCAGATCCCGAAATATCAAAATATATAGAAATGGCGAGAAGTATGTCTGGTATCACCATTAGATCAAAG : TTGGCAACGTTGTCCGATGGAGAAATTGTTGAGATGATTCTT</gDNA_template>
            <first_frame> Q  F  G  R  T  C  *  G  R  K  N  D  S  R  A  L  *  K  S  V  H  A  F  K  G  C  F  E  L  *  *  L  Q  R  C  G  S  S  H  R   : G  H  A  *  H  C  V  L  E  A  A  I  F  C  *  S  *  *  M  L  P  S  S  L  H  F  C  F  N  Y  L  Y  S  Q  L  R  F  D  W  R  K  D  E  T  M  *  G  D  C  W  D  P  L  F  *  :  L  T  L  C  H  *  S  P  G  N  C  P  N  K  E  D  I  P  S  N  A  C  *  S  V  K  L  W  K  E  D  S  K  D  S  Y  C  S  S  E  L  Y  R  F  C  S  Q  T  Y  V  L  P  L  L  A  G  S  D  A  S  C  *  T  W  C  *  C  V  S  D  *  *  G  A  Y  Q  L  W  V  E  T  G  S  I  *  :  N  A  *  S  R  W  I  P  V  C  S  C  A  *  C  E  I  P  *  D  F  S  R  *  I  L  Q  I  E  F  D  S  N  H  E  E  K  *  R  *  R :   *  I  L  L  P  G  L  L  H  I  Q  *  Q  G  R  G  K  P  R  S  R  N  I  K  I  Y  R  N  G  E  K  Y  V  W  Y  H  H  *  I  K   : V  G  N  V  V  R  W  R  N  C  *  D  D  S  </first_frame>
            <second_frame>  N  L  E  G  R  V  K  E  G  R  M  T  Q  E  H  Y  K  K  A  C  T  L  L  K  G  V  L  S  Y  D  N  F  K  D  V  D  L  V  I  E  :  D  M  P  D  I  V  S  L  K  Q  Q  F  F  A  D  L  D  E  C  C  P  H  H  C  I  F  A  S  T  T  C  I  V  N  L  D  L  I  G  E  R  M  K  P  C  R  E  I  V  G  I  H  F  F  S :   S  P  S  V  T  D  L  L  E  I  V  R  T  K  R  T  S  P  Q  T  L  V  D  L  L  N  F  G  R  R  I  Q  K  T  P  I  V  V  Q  N  C  T  G  F  A  V  R  H  M  C  F  P  Y  L  Q  A  A  M  L  L  V  E  H  G  A  D  V  Y  Q  I  D  K  A  L  T  S  F  G  L  K  L  G  P  F  R :   M  L  D  Q  D  G  F  L  S  A  A  V  H  D  V  K  F  L  E  T  F  P  D  R  S  Y  K  S  N  L  I  P  I  M  R  K  N  N  G  E   : G  K  Y  S  C  Q  G  F  Y  T  Y  N  D  K  E  E  A  S  P  D  P  E  I  S  K  Y  I  E  M  A  R  S  M  S  G  I  T  I  R  S  K  :  L  A  T  L  S  D  G  E  I  V  E  M  I  L </second_frame>
            <third_frame>   I  W  K  D  V  L  R  K  E  E  *  L  K  S  I  I  K  K  R  A  R  F  *  R  V  F  *  A  M  I  T  S  K  M  W  I  *  S  *  R :   T  C  L  T  L  C  P  *  S  S  N  F  L  L  I  L  M  N  V  A  L  I  T  A  F  L  L  Q  L  L  V  *  S  T  *  I  *  L  E  K  G  *  N  H  V  G  R  L  L  G  S  T  F  L   : A  H  P  L  S  L  I  S  W  K  L  S  E  Q  R  G  H  P  L  K  R  L  L  I  C  *  T  L  E  G  G  F  K  R  L  L  L  *  F  R  I  V  Q  V  L  Q  S  D  I  C  A  S  P  T  C  R  Q  R  C  F  L  L  N  M  V  L  M  C  I  R  L  I  R  R  L  P  A  L  G  *  N  W  V  H  L   : E  C  L  I  K  M  D  S  C  L  Q  L  C  M  M  *  N  S  L  R  L  F  Q  I  D  L  T  N  R  I  *  F  Q  S  *  G  K  I  T  V  K  :  V  N  T  L  A  R  A  S  T  H  T  M  T  R  K  R  Q  A  Q  I  P  K  Y  Q  N  I  *  K  W  R  E  V  C  L  V  S  P  L  D  Q  S :   W  Q  R  C  P  M  E  K  L  L  R  *  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0115P13.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9711" stop="9592"/>
                    <exon start="8656" stop="8493"/>
                    <exon start="8417" stop="8163"/>
                    <exon start="7788" stop="7667"/>
                    <exon start="7577" stop="7456"/>
                    <exon start="6766" stop="6725"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>825</number_coding_nucleotides>
                  <number_encoded_amino_acids>275</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLEGRVKEGRMTQEHYKKACTLLKGVLSYDNFKDVDLVIEDMPDIVSLKQQFFADLDECCPHHCIFASTTCIVNLDLIGERMKPCREIVGIHFFSSPSVTDLLEIVRTKRTSPQTLVDLLNFGRRIQKTPIVVQNCTGFAVRHMCFPYLQAAMLLVEHGADVYQIDKALTSFGLKLGPFRMLDQDGFLSAAVHDVKFLETFPDRSYKSNLIPIMRKNNGEGKYSCQGFYTYNDKEEASPDPEISKYIEMARSMSGITIRSKLATLSDGEIVEMIL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="7467" e_stop="6753"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="7467" e_stop="6753" e_length="715"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7467" stop="6753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465841" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTAGATCAAAGGTCTTCTCTCTCTCTCTCTCTGTCTCTCAGTTAACTGTCTTTTGGTCCTTCTATTGAAAGTTCTCTAGTAATCTTCCGACTGCACTTATCTTGAAGAAAGTATGAGGCTTATTGCTATGTACTATTTGGCTTTGGGAAAAAATAGAAAACATAAATAATGTTCATGATATAACCATAAAGCGGAACACCAAGATATGGTAATCAACAAGAATATAAAAAGAACGATAATGACACTAAGACTATTTATCGTTCAGTTAATTCTCAAAATGGCATGACTTTTGAGAAGGGAAGTGTCTTTTGATGTTTGTTTTTGTAATCATATACAGGATTCTTAATTTGTACAAAGAAAACAAAAAGAAGAGTAACTAGATAAACTGATCATTCTAATGTAAGAGACGTGCACATCACCGGGCTTATGTCCCCTCTTTATATAGGCAAATAGATTCTTCCTCTAATTGGTCACTTGCAAACAGTTCAACCTGTGTTTATTTGTTGTCTATCCGTTCTTTCATGATTGTAGATTTTGATAAATGATTCAGATTGTTTGAATGCCAAATTGTAGTTGGAATGAATATAATGCATTTACCAATCATTTGAACAAAATAAATTTTTGGAAAGGTCTTTGAATGTTTCCTTTCTATCTATCAATTTATGACTTGGTGCACGTCTGAACAATCAACTTGGTACAGTTGGCAACGTTGTC</gDNA_template>
            <first_frame> I  R  S  K  V  F  S  L  S  L  S  V  S  Q  L  T  V  F  W  S  F  Y  *  K  F  S  S  N  L  P  T  A  L  I  L  K  K  V  *  G  L  L  L  C  T  I  W  L  W  E  K  I  E  N  I  N  N  V  H  D  I  T  I  K  R  N  T  K  I  W  *  S  T  R  I  *  K  E  R  *  *  H  *  D  Y  L  S  F  S  *  F  S  K  W  H  D  F  *  E  G  K  C  L  L  M  F  V  F  V  I  I  Y  R  I  L  N  L  Y  K  E  N  K  K  K  S  N  *  I  N  *  S  F  *  C  K  R  R  A  H  H  R  A  Y  V  P  S  L  Y  R  Q  I  D  S  S  S  N  W  S  L  A  N  S  S  T  C  V  Y  L  L  S  I  R  S  F  M  I  V  D  F  D  K  *  F  R  L  F  E  C  Q  I  V  V  G  M  N  I  M  H  L  P  I  I  *  T  K  *  I  F  G  K  V  F  E  C  F  L  S  I  Y  Q  F  M  T  W  C  T  S  E  Q  S  T  W  Y  S  W  Q  R  C  </first_frame>
            <second_frame>  L  D  Q  R  S  S  L  S  L  S  L  S  L  S  *  L  S  F  G  P  S  I  E  S  S  L  V  I  F  R  L  H  L  S  *  R  K  Y  E  A  Y  C  Y  V  L  F  G  F  G  K  K  *  K  T  *  I  M  F  M  I  *  P  *  S  G  T  P  R  Y  G  N  Q  Q  E  Y  K  K  N  D  N  D  T  K  T  I  Y  R  S  V  N  S  Q  N  G  M  T  F  E  K  G  S  V  F  *  C  L  F  L  *  S  Y  T  G  F  L  I  C  T  K  K  T  K  R  R  V  T  R  *  T  D  H  S  N  V  R  D  V  H  I  T  G  L  M  S  P  L  Y  I  G  K  *  I  L  P  L  I  G  H  L  Q  T  V  Q  P  V  F  I  C  C  L  S  V  L  S  *  L  *  I  L  I  N  D  S  D  C  L  N  A  K  L  *  L  E  *  I  *  C  I  Y  Q  S  F  E  Q  N  K  F  L  E  R  S  L  N  V  S  F  L  S  I  N  L  *  L  G  A  R  L  N  N  Q  L  G  T  V  G  N  V  V </second_frame>
            <third_frame>   *  I  K  G  L  L  S  L  S  L  C  L  S  V  N  C  L  L  V  L  L  L  K  V  L  *  *  S  S  D  C  T  Y  L  E  E  S  M  R  L  I  A  M  Y  Y  L  A  L  G  K  N  R  K  H  K  *  C  S  *  Y  N  H  K  A  E  H  Q  D  M  V  I  N  K  N  I  K  R  T  I  M  T  L  R  L  F  I  V  Q  L  I  L  K  M  A  *  L  L  R  R  E  V  S  F  D  V  C  F  C  N  H  I  Q  D  S  *  F  V  Q  R  K  Q  K  E  E  *  L  D  K  L  I  I  L  M  *  E  T  C  T  S  P  G  L  C  P  L  F  I  *  A  N  R  F  F  L  *  L  V  T  C  K  Q  F  N  L  C  L  F  V  V  Y  P  F  F  H  D  C  R  F  *  *  M  I  Q  I  V  *  M  P  N  C  S  W  N  E  Y  N  A  F  T  N  H  L  N  K  I  N  F  W  K  G  L  *  M  F  P  F  Y  L  S  I  Y  D  L  V  H  V  *  T  I  N  L  V  Q  L  A  T  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLm0115P13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="17802" PGL_stop="17125"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17802" e_stop="17125"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="17802" e_stop="17125" e_length="678"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17802" stop="17202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17355" stop="17125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573431" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCATTAGTATGGAAATTTTTGATACAAAATGAGGAGAAAACTATTTTTAAGTGCACTAAATGTAAATTGATAATGAAACATGTAACTACGGGTACACAAGGGGGAACGGGACGACTAAGAACACATTTACGAAAGTGTAATAAAGAATTTACTCGCCTAGATGATATAGAAAGAGATAATAGAAATGGAACACCCATACCTGAAAGTTCTATAGATGTTGGAGGTTCTAATATGGTTCAAGGTGTATTAAATATGTTTAACCCGGCTAGTCGAAGCACACACTGCACGTGTAGTAAAGAAAAAGATCGTAGAGAATTAGCTAAAATGGTTGTTGTTTGTGGTTTACCTTTTTCATTTCCTTCTCATCCTGGTTTTGTTCATTATATTCGAGAATTATATAACCCAGATTATGAAGGTATTCCAAGAAATACAATTAAAAGTGATCTTTTTAAATATCAAAAAGAATATTCTCATTTTCTTTGTTGTTTATTTGCTTATTATGATGGTAGAGTATCTATTACTTCTGATATGGGACGTAGTCCTAATGGTAACGATTATTTAACACTTACTGTCCATTGGATTGACCATGAATGGAACATGCAAAAACGAATATTAGCGTATAAATATGTTGAAGAAACTAAAACCGGTTCTTATATAGCATCAAAAGTAGGCTCTA</gDNA_template>
            <first_frame> D  H  *  Y  G  N  F  *  Y  K  M  R  R  K  L  F  L  S  A  L  N  V  N  *  *  *  N  M  *  L  R  V  H  K  G  E  R  D  D  *  E  H  I  Y  E  S  V  I  K  N  L  L  A  *  M  I  *  K  E  I  I  E  M  E  H  P  Y  L  K  V  L  *  M  L  E  V  L  I  W  F  K  V  Y  *  I  C  L  T  R  L  V  E  A  H  T  A  R  V  V  K  K  K  I  V  E  N  *  L  K  W  L  L  F  V  V  Y  L  F  H  F  L  L  I  L  V  L  F  I  I  F  E  N  Y  I  T  Q  I  M  K  V  F  Q  E  I  Q  L  K  V  I  F  L  N  I  K  K  N  I  L  I  F  F  V  V  Y  L  L  I  M  M  V  E  Y  L  L  L  L  I  W  D  V  V  L  M  V  T  I  I  *  H  L  L  S  I  G  L  T  M  N  G  T  C  K  N  E  Y  *  R  I  N  M  L  K  K  L  K  P  V  L  I  *  H  Q  K  *  A  L </first_frame>
            <second_frame>  I  I  S  M  E  I  F  D  T  K  *  G  E  N  Y  F  *  V  H  *  M  *  I  D  N  E  T  C  N  Y  G  Y  T  R  G  N  G  T  T  K  N  T  F  T  K  V  *  *  R  I  Y  S  P  R  *  Y  R  K  R  *  *  K  W  N  T  H  T  *  K  F  Y  R  C  W  R  F  *  Y  G  S  R  C  I  K  Y  V  *  P  G  *  S  K  H  T  L  H  V  *  *  R  K  R  S  *  R  I  S  *  N  G  C  C  L  W  F  T  F  F  I  S  F  S  S  W  F  C  S  L  Y  S  R  I  I  *  P  R  L  *  R  Y  S  K  K  Y  N  *  K  *  S  F  *  I  S  K  R  I  F  S  F  S  L  L  F  I  C  L  L  *  W  *  S  I  Y  Y  F  *  Y  G  T  *  S  *  W  *  R  L  F  N  T  Y  C  P  L  D  *  P  *  M  E  H  A  K  T  N  I  S  V  *  I  C  *  R  N  *  N  R  F  L  Y  S  I  K  S  R  L   </second_frame>
            <third_frame>   S  L  V  W  K  F  L  I  Q  N  E  E  K  T  I  F  K  C  T  K  C  K  L  I  M  K  H  V  T  T  G  T  Q  G  G  T  G  R  L  R  T  H  L  R  K  C  N  K  E  F  T  R  L  D  D  I  E  R  D  N  R  N  G  T  P  I  P  E  S  S  I  D  V  G  G  S  N  M  V  Q  G  V  L  N  M  F  N  P  A  S  R  S  T  H  C  T  C  S  K  E  K  D  R  R  E  L  A  K  M  V  V  V  C  G  L  P  F  S  F  P  S  H  P  G  F  V  H  Y  I  R  E  L  Y  N  P  D  Y  E  G  I  P  R  N  T  I  K  S  D  L  F  K  Y  Q  K  E  Y  S  H  F  L  C  C  L  F  A  Y  Y  D  G  R  V  S  I  T  S  D  M  G  R  S  P  N  G  N  D  Y  L  T  L  T  V  H  W  I  D  H  E  W  N  M  Q  K  R  I  L  A  Y  K  Y  V  E  E  T  K  T  G  S  Y  I  A  S  K  V  G  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0115P13.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17800" stop="17126"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>675</number_coding_nucleotides>
                  <number_encoded_amino_acids>225</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLVWKFLIQNEEKTIFKCTKCKLIMKHVTTGTQGGTGRLRTHLRKCNKEFTRLDDIERDNRNGTPIPESSIDVGGSNMVQGVLNMFNPASRSTHCTCSKEKDRRELAKMVVVCGLPFSFPSHPGFVHYIRELYNPDYEGIPRNTIKSDLFKYQKEYSHFLCCLFAYYDGRVSITSDMGRSPNGNDYLTLTVHWIDHEWNMQKRILAYKYVEETKTGSYIASKVGS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="25625" PGL_stop="30344"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25625" e_stop="25922"/>
            <exon e_start="27187" e_stop="27369"/>
            <exon e_start="28934" e_stop="29175"/>
            <exon e_start="29807" e_stop="30344"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.940" e_score="0.980"/>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="25625" e_stop="25922" e_length="298"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.940">
            <gDNA_intron_boundary i_start="25923" i_stop="27186" i_length="1264"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27187" e_stop="27369" e_length="183"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="27370" i_stop="28933" i_length="1564"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28934" e_stop="29175" e_length="242"/>
          </exon>
          <intron i_serial="3" don_prob="0.924" acc_prob="1.000">
            <gDNA_intron_boundary i_start="29176" i_stop="29806" i_length="631"/>
          </intron>
          <exon e_serial="4" e_score="0.981">
            <gDNA_exon_boundary e_start="29807" e_stop="30344" e_length="538"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25625" stop="25922"/>
              <exon start="27187" stop="27369"/>
              <exon start="28934" stop="29175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25625" stop="25922"/>
              <exon start="27187" stop="27369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25626" stop="25922"/>
              <exon start="27187" stop="27369"/>
              <exon start="28934" stop="29175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25628" stop="25922"/>
              <exon start="27187" stop="27369"/>
              <exon start="28934" stop="29113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25650" stop="25922"/>
              <exon start="27187" stop="27210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25653" stop="25922"/>
              <exon start="27187" stop="27369"/>
              <exon start="28934" stop="29165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25656" stop="25922"/>
              <exon start="27187" stop="27369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25751" stop="25922"/>
              <exon start="27187" stop="27369"/>
              <exon start="28934" stop="29175"/>
              <exon start="29807" stop="29992"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25834" stop="25922"/>
              <exon start="27187" stop="27369"/>
              <exon start="28934" stop="29175"/>
              <exon start="29807" stop="30077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25890" stop="25922"/>
              <exon start="27187" stop="27369"/>
              <exon start="28934" stop="29175"/>
              <exon start="29807" stop="30023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27187" stop="27369"/>
              <exon start="28934" stop="29175"/>
              <exon start="29807" stop="30040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27187" stop="27369"/>
              <exon start="28934" stop="29175"/>
              <exon start="29807" stop="29899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28992" stop="29175"/>
              <exon start="29807" stop="30344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29034" stop="29175"/>
              <exon start="29807" stop="30266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29889" stop="30266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290677" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACAGAACCAGCCATGGAGAATATACAGCACAAAAATCTCACTGTAAACGGCATAAATATGCACATAGCTGAAATTGGTGAAGGCCCATCAACAATACTATTCCTTCATGGTTTCCCTGAACTCTGGTATTCATGGCGTCACCAACTGATTTCACTTTCATCCAAAGGTTACCGCGCAATAGCACCAGATCTACGTGGTTATGGCGATACAGATTCTCCCCCTTCTCCTTCTAGCTATACCGTTTTTCATATTGTTGGTGACCTTATTGCCCTTCTAGATGCTCTGGGTCTCGATCAG : GTGTTCCTTGTTGGACATGATTGGGGTGCTGTTATAGCTTGGCATGTATGCCTTTTGCGACCTGATAGGATCAAAGCACTGGTTAATATGAGCGTTGTCTTCCACCCCAGGAACCCCAAGAGAAAGCCTATTGAATCTATGCGTGCTGTCCTCGGGGATGATTACTATATTTGCAGATTTCAG : GAATATGGAGAGGCAGAAGAGGAGTTTGCTCGTGTTGATACCGCTAGACTAATCGCGAAATTTTTAACATCACGCAATCCAGCTCCTCTTCGTGTGCCTAAAGAGAAAGGATTTGGGGGTTCACCACATACTCCCATTACATTGCCATCTTGGTTGTCAGAAGAGGATGTCAACTACTATGCCAACAAGTTCAGACAGTCAGGTTTTACTGGTGGATTAAACTACTATCGAGCTATGGACCT : AAACTGGGAGCTGACCGCGCCATGGACCGGTGTACAAATTAAGGTCCCTGTTAAGTTCATCGTAGGGGATGTGGACCTAACTTACAATACACCTGGTGTTAAGGAATATATCCACAAAGGTGGTTTCCAAAAAGTGGTGCCATTCTTGCAAGAAGTAGTTATCATGGAAGGAGTTGCACACTTCATCAACCAAGAAAGACCAGAAGAAATTAATGACCACATATATGACTTTTTTCAAAAGTTCTAAGGTGTCTGTAATTTTAACTTTTTATCATGGATTGCTTTGTTGCTTTGAATCTTTTTTCAAGTCTTTTTATGTGTGTGGGATAAAGGGCACATGGTCTATCGGAAATAGCCTCTCTATCCCAAAAGGTAGAGATAGGTTTGCATTACCATCCTCATACCCCACTTGTGAATTACACTAGATATGTTGTTATTAGAATATAAGACCAGTTTATGTATCTTAAAACTTCAAAGCTTTTACTAAAGAATTCAGCTTTTCTGGACTATTTTTAATTTGGTAACTATGGACAGAATC</gDNA_template>
            <first_frame> H  R  T  S  H  G  E  Y  T  A  Q  K  S  H  C  K  R  H  K  Y  A  H  S  *  N  W  *  R  P  I  N  N  T  I  P  S  W  F  P  *  T  L  V  F  M  A  S  P  T  D  F  T  F  I  Q  R  L  P  R  N  S  T  R  S  T  W  L  W  R  Y  R  F  S  P  F  S  F  *  L  Y  R  F  S  Y  C  W  *  P  Y  C  P  S  R  C  S  G  S  R  S   : G  V  P  C  W  T  *  L  G  C  C  Y  S  L  A  C  M  P  F  A  T  *  *  D  Q  S  T  G  *  Y  E  R  C  L  P  P  Q  E  P  Q  E  K  A  Y  *  I  Y  A  C  C  P  R  G  *  L  L  Y  L  Q  I  S   : G  I  W  R  G  R  R  G  V  C  S  C  *  Y  R  *  T  N  R  E  I  F  N  I  T  Q  S  S  S  S  S  C  A  *  R  E  R  I  W  G  F  T  T  Y  S  H  Y  I  A  I  L  V  V  R  R  G  C  Q  L  L  C  Q  Q  V  Q  T  V  R  F  Y  W  W  I  K  L  L  S  S  Y  G  P  :  K  L  G  A  D  R  A  M  D  R  C  T  N  *  G  P  C  *  V  H  R  R  G  C  G  P  N  L  Q  Y  T  W  C  *  G  I  Y  P  Q  R  W  F  P  K  S  G  A  I  L  A  R  S  S  Y  H  G  R  S  C  T  L  H  Q  P  R  K  T  R  R  N  *  *  P  H  I  *  L  F  S  K  V  L  R  C  L  *  F  *  L  F  I  M  D  C  F  V  A  L  N  L  F  S  S  L  F  M  C  V  G  *  R  A  H  G  L  S  E  I  A  S  L  S  Q  K  V  E  I  G  L  H  Y  H  P  H  T  P  L  V  N  Y  T  R  Y  V  V  I  R  I  *  D  Q  F  M  Y  L  K  T  S  K  L  L  L  K  N  S  A  F  L  D  Y  F  *  F  G  N  Y  G  Q  N  </first_frame>
            <second_frame>  T  E  P  A  M  E  N  I  Q  H  K  N  L  T  V  N  G  I  N  M  H  I  A  E  I  G  E  G  P  S  T  I  L  F  L  H  G  F  P  E  L  W  Y  S  W  R  H  Q  L  I  S  L  S  S  K  G  Y  R  A  I  A  P  D  L  R  G  Y  G  D  T  D  S  P  P  S  P  S  S  Y  T  V  F  H  I  V  G  D  L  I  A  L  L  D  A  L  G  L  D  Q  :  V  F  L  V  G  H  D  W  G  A  V  I  A  W  H  V  C  L  L  R  P  D  R  I  K  A  L  V  N  M  S  V  V  F  H  P  R  N  P  K  R  K  P  I  E  S  M  R  A  V  L  G  D  D  Y  Y  I  C  R  F  Q  :  E  Y  G  E  A  E  E  E  F  A  R  V  D  T  A  R  L  I  A  K  F  L  T  S  R  N  P  A  P  L  R  V  P  K  E  K  G  F  G  G  S  P  H  T  P  I  T  L  P  S  W  L  S  E  E  D  V  N  Y  Y  A  N  K  F  R  Q  S  G  F  T  G  G  L  N  Y  Y  R  A  M  D  L :   N  W  E  L  T  A  P  W  T  G  V  Q  I  K  V  P  V  K  F  I  V  G  D  V  D  L  T  Y  N  T  P  G  V  K  E  Y  I  H  K  G  G  F  Q  K  V  V  P  F  L  Q  E  V  V  I  M  E  G  V  A  H  F  I  N  Q  E  R  P  E  E  I  N  D  H  I  Y  D  F  F  Q  K  F  *  G  V  C  N  F  N  F  L  S  W  I  A  L  L  L  *  I  F  F  Q  V  F  L  C  V  W  D  K  G  H  M  V  Y  R  K  *  P  L  Y  P  K  R  *  R  *  V  C  I  T  I  L  I  P  H  L  *  I  T  L  D  M  L  L  L  E  Y  K  T  S  L  C  I  L  K  L  Q  S  F  Y  *  R  I  Q  L  F  W  T  I  F  N  L  V  T  M  D  R  I </second_frame>
            <third_frame>   Q  N  Q  P  W  R  I  Y  S  T  K  I  S  L  *  T  A  *  I  C  T  *  L  K  L  V  K  A  H  Q  Q  Y  Y  S  F  M  V  S  L  N  S  G  I  H  G  V  T  N  *  F  H  F  H  P  K  V  T  A  Q  *  H  Q  I  Y  V  V  M  A  I  Q  I  L  P  L  L  L  L  A  I  P  F  F  I  L  L  V  T  L  L  P  F  *  M  L  W  V  S  I  R :   C  S  L  L  D  M  I  G  V  L  L  *  L  G  M  Y  A  F  C  D  L  I  G  S  K  H  W  L  I  *  A  L  S  S  T  P  G  T  P  R  E  S  L  L  N  L  C  V  L  S  S  G  M  I  T  I  F  A  D  F  R :   N  M  E  R  Q  K  R  S  L  L  V  L  I  P  L  D  *  S  R  N  F  *  H  H  A  I  Q  L  L  F  V  C  L  K  R  K  D  L  G  V  H  H  I  L  P  L  H  C  H  L  G  C  Q  K  R  M  S  T  T  M  P  T  S  S  D  S  Q  V  L  L  V  D  *  T  T  I  E  L  W  T   : *  T  G  S  *  P  R  H  G  P  V  Y  K  L  R  S  L  L  S  S  S  *  G  M  W  T  *  L  T  I  H  L  V  L  R  N  I  S  T  K  V  V  S  K  K  W  C  H  S  C  K  K  *  L  S  W  K  E  L  H  T  S  S  T  K  K  D  Q  K  K  L  M  T  T  Y  M  T  F  F  K  S  S  K  V  S  V  I  L  T  F  Y  H  G  L  L  C  C  F  E  S  F  F  K  S  F  Y  V  C  G  I  K  G  T  W  S  I  G  N  S  L  S  I  P  K  G  R  D  R  F  A  L  P  S  S  Y  P  T  C  E  L  H  *  I  C  C  Y  *  N  I  R  P  V  Y  V  S  *  N  F  K  A  F  T  K  E  F  S  F  S  G  L  F  L  I  W  *  L  W  T  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0115P13.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25626" stop="25922"/>
                    <exon start="27187" stop="27369"/>
                    <exon start="28934" stop="29175"/>
                    <exon start="29807" stop="30053"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>966</number_coding_nucleotides>
                  <number_encoded_amino_acids>322</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TEPAMENIQHKNLTVNGINMHIAEIGEGPSTILFLHGFPELWYSWRHQLISLSSKGYRAIAPDLRGYGDTDSPPSPSSYTVFHIVGDLIALLDALGLDQVFLVGHDWGAVIAWHVCLLRPDRIKALVNMSVVFHPRNPKRKPIESMRAVLGDDYYICRFQEYGEAEEEFARVDTARLIAKFLTSRNPAPLRVPKEKGFGGSPHTPITLPSWLSEEDVNYYANKFRQSGFTGGLNYYRAMDLNWELTAPWTGVQIKVPVKFIVGDVDLTYNTPGVKEYIHKGGFQKVVPFLQEVVIMEGVAHFINQERPEEINDHIYDFFQKF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="38624" PGL_stop="33266"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38624" e_stop="38552"/>
            <exon e_start="37766" e_stop="37678"/>
            <exon e_start="37590" e_stop="37525"/>
            <exon e_start="37427" e_stop="37353"/>
            <exon e_start="36974" e_stop="36848"/>
            <exon e_start="36766" e_stop="36720"/>
            <exon e_start="36612" e_stop="36555"/>
            <exon e_start="34454" e_stop="34405"/>
            <exon e_start="34292" e_stop="34236"/>
            <exon e_start="34121" e_stop="34015"/>
            <exon e_start="33926" e_stop="33434"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.699" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.922" acc_prob="0.926" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.870" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.429" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38624" e_stop="38552" e_length="73"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.998">
            <gDNA_intron_boundary i_start="38551" i_stop="37767" i_length="785"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37766" e_stop="37678" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37677" i_stop="37591" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37590" e_stop="37525" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="37524" i_stop="37428" i_length="97"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="37427" e_stop="37353" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="37352" i_stop="36975" i_length="378"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="36974" e_stop="36848" e_length="127"/>
          </exon>
          <intron i_serial="5" don_prob="0.977" acc_prob="0.993">
            <gDNA_intron_boundary i_start="36847" i_stop="36767" i_length="81"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="36766" e_stop="36720" e_length="47"/>
          </exon>
          <intron i_serial="6" don_prob="0.699" acc_prob="0.998">
            <gDNA_intron_boundary i_start="36719" i_stop="36613" i_length="107"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="36612" e_stop="36555" e_length="58"/>
          </exon>
          <intron i_serial="7" don_prob="0.922" acc_prob="0.926">
            <gDNA_intron_boundary i_start="36554" i_stop="34455" i_length="2100"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="34454" e_stop="34405" e_length="50"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.959">
            <gDNA_intron_boundary i_start="34404" i_stop="34293" i_length="112"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="34292" e_stop="34236" e_length="57"/>
          </exon>
          <intron i_serial="9" don_prob="0.870" acc_prob="0.999">
            <gDNA_intron_boundary i_start="34235" i_stop="34122" i_length="114"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="34121" e_stop="34015" e_length="107"/>
          </exon>
          <intron i_serial="10" don_prob="1.000" acc_prob="0.429">
            <gDNA_intron_boundary i_start="34014" i_stop="33927" i_length="88"/>
          </intron>
          <exon e_serial="11" e_score="0.996">
            <gDNA_exon_boundary e_start="33926" e_stop="33434" e_length="493"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38624" stop="38552"/>
              <exon start="37766" stop="37678"/>
              <exon start="37590" stop="37525"/>
              <exon start="37427" stop="37353"/>
              <exon start="36974" stop="36848"/>
              <exon start="36766" stop="36720"/>
              <exon start="36612" stop="36555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38614" stop="38552"/>
              <exon start="37766" stop="37678"/>
              <exon start="37590" stop="37525"/>
              <exon start="37427" stop="37353"/>
              <exon start="36974" stop="36848"/>
              <exon start="36766" stop="36720"/>
              <exon start="36612" stop="36555"/>
              <exon start="34454" stop="34405"/>
              <exon start="34292" stop="34248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38613" stop="38552"/>
              <exon start="37766" stop="37678"/>
              <exon start="37590" stop="37525"/>
              <exon start="37427" stop="37353"/>
              <exon start="36974" stop="36848"/>
              <exon start="36766" stop="36720"/>
              <exon start="36612" stop="36555"/>
              <exon start="34454" stop="34405"/>
              <exon start="34292" stop="34236"/>
              <exon start="34121" stop="34116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38613" stop="38552"/>
              <exon start="37766" stop="37678"/>
              <exon start="37590" stop="37525"/>
              <exon start="37427" stop="37353"/>
              <exon start="36974" stop="36848"/>
              <exon start="36766" stop="36720"/>
              <exon start="36612" stop="36555"/>
              <exon start="34454" stop="34429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38613" stop="38552"/>
              <exon start="37766" stop="37678"/>
              <exon start="37590" stop="37525"/>
              <exon start="37427" stop="37353"/>
              <exon start="36974" stop="36852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38613" stop="38552"/>
              <exon start="37766" stop="37678"/>
              <exon start="37590" stop="37525"/>
              <exon start="37427" stop="37353"/>
              <exon start="36974" stop="36887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38612" stop="38552"/>
              <exon start="37766" stop="37678"/>
              <exon start="37590" stop="37525"/>
              <exon start="37427" stop="37353"/>
              <exon start="36974" stop="36848"/>
              <exon start="36766" stop="36720"/>
              <exon start="36612" stop="36589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38612" stop="38552"/>
              <exon start="37766" stop="37678"/>
              <exon start="37590" stop="37525"/>
              <exon start="37427" stop="37370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594918" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38610" stop="38552"/>
              <exon start="37766" stop="37678"/>
              <exon start="37590" stop="37525"/>
              <exon start="37427" stop="37353"/>
              <exon start="36974" stop="36848"/>
              <exon start="36766" stop="36720"/>
              <exon start="36612" stop="36601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38609" stop="38552"/>
              <exon start="37766" stop="37678"/>
              <exon start="37590" stop="37525"/>
              <exon start="37427" stop="37353"/>
              <exon start="36974" stop="36848"/>
              <exon start="36766" stop="36720"/>
              <exon start="36612" stop="36555"/>
              <exon start="34454" stop="34405"/>
              <exon start="34292" stop="34236"/>
              <exon start="34121" stop="34015"/>
              <exon start="33926" stop="33856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38607" stop="38552"/>
              <exon start="37766" stop="37678"/>
              <exon start="37590" stop="37525"/>
              <exon start="37427" stop="37353"/>
              <exon start="36974" stop="36848"/>
              <exon start="36766" stop="36720"/>
              <exon start="36612" stop="36555"/>
              <exon start="34454" stop="34405"/>
              <exon start="34292" stop="34260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38602" stop="38552"/>
              <exon start="37766" stop="37678"/>
              <exon start="37590" stop="37525"/>
              <exon start="37427" stop="37353"/>
              <exon start="36974" stop="36848"/>
              <exon start="36766" stop="36720"/>
              <exon start="36612" stop="36555"/>
              <exon start="34454" stop="34421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38601" stop="38552"/>
              <exon start="37766" stop="37678"/>
              <exon start="37590" stop="37525"/>
              <exon start="37427" stop="37353"/>
              <exon start="36974" stop="36848"/>
              <exon start="36766" stop="36720"/>
              <exon start="36612" stop="36555"/>
              <exon start="34454" stop="34405"/>
              <exon start="34292" stop="34236"/>
              <exon start="34121" stop="34053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38600" stop="38552"/>
              <exon start="37766" stop="37678"/>
              <exon start="37590" stop="37525"/>
              <exon start="37427" stop="37353"/>
              <exon start="36974" stop="36848"/>
              <exon start="36766" stop="36720"/>
              <exon start="36612" stop="36555"/>
              <exon start="34454" stop="34405"/>
              <exon start="34292" stop="34236"/>
              <exon start="34121" stop="34015"/>
              <exon start="33926" stop="33828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38583" stop="38552"/>
              <exon start="37766" stop="37678"/>
              <exon start="37590" stop="37525"/>
              <exon start="37427" stop="37353"/>
              <exon start="36974" stop="36932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38581" stop="38552"/>
              <exon start="37766" stop="37678"/>
              <exon start="37590" stop="37525"/>
              <exon start="37427" stop="37353"/>
              <exon start="36974" stop="36848"/>
              <exon start="36766" stop="36720"/>
              <exon start="36612" stop="36569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38573" stop="38552"/>
              <exon start="37766" stop="37678"/>
              <exon start="37590" stop="37525"/>
              <exon start="37427" stop="37353"/>
              <exon start="36974" stop="36848"/>
              <exon start="36766" stop="36720"/>
              <exon start="36612" stop="36555"/>
              <exon start="34454" stop="34405"/>
              <exon start="34292" stop="34236"/>
              <exon start="34121" stop="34115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38563" stop="38552"/>
              <exon start="37766" stop="37678"/>
              <exon start="37590" stop="37525"/>
              <exon start="37427" stop="37353"/>
              <exon start="36974" stop="36848"/>
              <exon start="36766" stop="36720"/>
              <exon start="36612" stop="36555"/>
              <exon start="34454" stop="34405"/>
              <exon start="34292" stop="34236"/>
              <exon start="34121" stop="34034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37688" stop="37678"/>
              <exon start="37590" stop="37525"/>
              <exon start="37427" stop="37353"/>
              <exon start="36974" stop="36848"/>
              <exon start="36766" stop="36720"/>
              <exon start="36612" stop="36555"/>
              <exon start="34454" stop="34405"/>
              <exon start="34292" stop="34236"/>
              <exon start="34121" stop="34015"/>
              <exon start="33926" stop="33828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37360" stop="37353"/>
              <exon start="36974" stop="36848"/>
              <exon start="36766" stop="36720"/>
              <exon start="36612" stop="36555"/>
              <exon start="34454" stop="34405"/>
              <exon start="34292" stop="34271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36960" stop="36848"/>
              <exon start="36766" stop="36720"/>
              <exon start="36612" stop="36555"/>
              <exon start="34454" stop="34405"/>
              <exon start="34292" stop="34278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34431" stop="34405"/>
              <exon start="34292" stop="34236"/>
              <exon start="34121" stop="34015"/>
              <exon start="33926" stop="33434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34430" stop="34405"/>
              <exon start="34292" stop="34236"/>
              <exon start="34121" stop="34015"/>
              <exon start="33926" stop="33534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303030" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAACCCTAACCTTCAAAATTCTCCTTCTCTAAGCGCTCTGTGTTTTCATCCTTCATCAATCTTCTAGTAAAG : GAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAG : TATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAG : TTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGG : GTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTCAGATCGTTATAATAGTGGCAATAATAGTGGCCATAATGGTGGTCGTAATAATCACAAATTTGGAGCGCCCAAACGTACCGAGTATCGAG : TTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAG : GATCATATGCGTCGAGCTGGGGATGTTTGTTTCTCACAAGTTTTCCGTGAGGGGAGTG : GGACCACTGGGATTGTGGATTATACCAACTATGACGACATGAAATATGCT : ATAAAAAAACTTGATGAATCTGAGTTTCGGAATGCTTTTTCTCGTTCAACAATTCGG : GTGAAGGAACATGATTCTAGAAGCCGCAGCCGCAGCCGTTCTTACTCGAGAGGAAAGAGTGGTAGCCGTAGCCGCAGTCGAAGTTACAGTCGCAGCCGGAGCAGAAG : CAAATCTCCTAAAGCTAAGTCGTCAAAGCGTACAAGATCTCGTTCTAGATCTGTCTCTTCTCAGCCCCGTTCTGGGTTAAAAGGACGCTCTTTGTCAAGGTAATCTTTCTTACTGGTCATATCTACCCATTTTGTTGTTGGGGCAGGTTATGTAAAAGTAGCATATAGTACAAGGTTAATGTATATTTTTATGCAAGTCCTTGTACTGGTCTTTTTTTGAGTCAAAAGTCCTTGTGTCTATCAGTTTATCTTAATCATTTTAATCTTTTCTTTGTGAAAGCCACCTGGGAATTAACTGTTGCATCTTGCACCTCATTTATTTAGTGGGAAATCAGCTGAGCACTTTGTTTCCAACCCTTAATCTTGACTAGACTTTGTATAGTTGTGGACATGAGATGGCTTTGAAGCAAAAAGTTGTTTTGCAGTGTGACCAATTTAACATTTTCACACAAGTTGGTTGTAAATTTCACAAATTCAAATTGCAAATTGCATC</gDNA_template>
            <first_frame> K  T  L  T  F  K  I  L  L  L  *  A  L  C  V  F  I  L  H  Q  S  S  S  K   : G  T  M  S  R  S  S  R  T  I  Y  V  G  N  L  P  G  D  I  R  E  R  E  V  E  D  L  F  Y  K  :  Y  G  P  I  A  H  I  D  L  K  I  P  P  R  P  P  G  Y  A  F  V  E  :  F  E  E  A  R  D  A  E  D  A  I  R  G  R  D  G  Y  E  F  D  G  H  R  L  R  :  V  E  L  A  H  G  G  R  G  N  S  S  S  D  R  Y  N  S  G  N  N  S  G  H  N  G  G  R  N  N  H  K  F  G  A  P  K  R  T  E  Y  R   : V  L  V  T  G  L  P  H  S  A  S  W  Q  D  L  K  :  D  H  M  R  R  A  G  D  V  C  F  S  Q  V  F  R  E  G  S   : G  T  T  G  I  V  D  Y  T  N  Y  D  D  M  K  Y  A  :  I  K  K  L  D  E  S  E  F  R  N  A  F  S  R  S  T  I  R  :  V  K  E  H  D  S  R  S  R  S  R  S  R  S  Y  S  R  G  K  S  G  S  R  S  R  S  R  S  Y  S  R  S  R  S  R  S :   K  S  P  K  A  K  S  S  K  R  T  R  S  R  S  R  S  V  S  S  Q  P  R  S  G  L  K  G  R  S  L  S  R  *  S  F  L  L  V  I  S  T  H  F  V  V  G  A  G  Y  V  K  V  A  Y  S  T  R  L  M  Y  I  F  M  Q  V  L  V  L  V  F  F  *  V  K  S  P  C  V  Y  Q  F  I  L  I  I  L  I  F  S  L  *  K  P  P  G  N  *  L  L  H  L  A  P  H  L  F  S  G  K  S  A  E  H  F  V  S  N  P  *  S  *  L  D  F  V  *  L  W  T  *  D  G  F  E  A  K  S  C  F  A  V  *  P  I  *  H  F  H  T  S  W  L  *  I  S  Q  I  Q  I  A  N  C  I </first_frame>
            <second_frame>  K  P  *  P  S  K  F  S  F  S  K  R  S  V  F  S  S  F  I  N  L  L  V  K  :  E  Q  *  V  V  Q  V  G  R  F  M  L  V  I  F  L  V  I  F  V  S  E  K  W  R  I  C  S  T  S :   M  A  R  *  H  I  L  I  *  K  F  H  Q  D  P  Q  V  M  L  L  L  S :   L  K  R  H  A  M  L  R  M  L  F  V  G  A  M  A  M  N  L  M  G  I  V  *  G :   L  S  L  H  M  V  G  V  V  T  H  R  Q  I  V  I  I  V  A  I  I  V  A  I  M  V  V  V  I  I  T  N  L  E  R  P  N  V  P  S  I  E  :  F  *  L  P  D  C  P  I  Q  H  P  G  R  I  S  R :   I  I  C  V  E  L  G  M  F  V  S  H  K  F  S  V  R  G  V  :  G  P  L  G  L  W  I  I  P  T  M  T  T  *  N  M  L :   *  K  N  L  M  N  L  S  F  G  M  L  F  L  V  Q  Q  F  G :   *  R  N  M  I  L  E  A  A  A  A  A  V  L  T  R  E  E  R  V  V  A  V  A  A  V  E  V  T  V  A  A  G  A  E   : A  N  L  L  K  L  S  R  Q  S  V  Q  D  L  V  L  D  L  S  L  L  S  P  V  L  G  *  K  D  A  L  C  Q  G  N  L  S  Y  W  S  Y  L  P  I  L  L  L  G  Q  V  M  *  K  *  H  I  V  Q  G  *  C  I  F  L  C  K  S  L  Y  W  S  F  F  E  S  K  V  L  V  S  I  S  L  S  *  S  F  *  S  F  L  C  E  S  H  L  G  I  N  C  C  I  L  H  L  I  Y  L  V  G  N  Q  L  S  T  L  F  P  T  L  N  L  D  *  T  L  Y  S  C  G  H  E  M  A  L  K  Q  K  V  V  L  Q  C  D  Q  F  N  I  F  T  Q  V  G  C  K  F  H  K  F  K  L  Q  I  A   </second_frame>
            <third_frame>   N  P  N  L  Q  N  S  P  S  L  S  A  L  C  F  H  P  S  S  I  F  *  *  R :   N  N  E  S  F  K  *  D  D  L  C  W  *  S  S  W  *  Y  S  *  A  R  S  G  G  S  V  L  Q   : V  W  P  D  S  T  Y  *  S  E  N  S  T  K  T  P  R  L  C  F  C  *   : V  *  R  G  T  R  C  *  G  C  Y  S  W  A  R  W  L  *  I  *  W  A  S  F  E   : G  *  A  C  T  W  W  A  W  *  L  I  V  R  S  L  *  *  W  Q  *  *  W  P  *  W  W  S  *  *  S  Q  I  W  S  A  Q  T  Y  R  V  S  S :   F  S  Y  R  I  A  P  F  S  I  L  A  G  S  Q   : G  S  Y  A  S  S  W  G  C  L  F  L  T  S  F  P  *  G  E  W :   D  H  W  D  C  G  L  Y  Q  L  *  R  H  E  I  C   : Y  K  K  T  *  *  I  *  V  S  E  C  F  F  S  F  N  N  S   : G  E  G  T  *  F  *  K  P  Q  P  Q  P  F  L  L  E  R  K  E  W  *  P  *  P  Q  S  K  L  Q  S  Q  P  E  Q  K  :  Q  I  S  *  S  *  V  V  K  A  Y  K  I  S  F  *  I  C  L  F  S  A  P  F  W  V  K  R  T  L  F  V  K  V  I  F  L  T  G  H  I  Y  P  F  C  C  W  G  R  L  C  K  S  S  I  *  Y  K  V  N  V  Y  F  Y  A  S  P  C  T  G  L  F  L  S  Q  K  S  L  C  L  S  V  Y  L  N  H  F  N  L  F  F  V  K  A  T  W  E  L  T  V  A  S  C  T  S  F  I  *  W  E  I  S  *  A  L  C  F  Q  P  L  I  L  T  R  L  C  I  V  V  D  M  R  W  L  *  S  K  K  L  F  C  S  V  T  N  L  T  F  S  H  K  L  V  V  N  F  T  N  S  N  C  K  L  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0115P13.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38591" stop="38552"/>
                    <exon start="37766" stop="37678"/>
                    <exon start="37590" stop="37525"/>
                    <exon start="37427" stop="37353"/>
                    <exon start="36974" stop="36848"/>
                    <exon start="36766" stop="36720"/>
                    <exon start="36612" stop="36555"/>
                    <exon start="34454" stop="34405"/>
                    <exon start="34292" stop="34236"/>
                    <exon start="34121" stop="34015"/>
                    <exon start="33926" stop="33824"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>816</number_coding_nucleotides>
                  <number_encoded_amino_acids>272</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALCVFILHQSSSKGTMSRSSRTIYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYEFDGHRLRVELAHGGRGNSSSDRYNSGNNSGHNGGRNNHKFGAPKRTEYRVLVTGLPHSASWQDLKDHMRRAGDVCFSQVFREGSGTTGIVDYTNYDDMKYAIKKLDESEFRNAFSRSTIRVKEHDSRSRSRSRSYSRGKSGSRSRSRSYSRSRSRSKSPKAKSSKRTRSRSRSVSSQPRSGLKGRSLSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="38624" e_stop="38552"/>
            <exon e_start="37766" e_stop="37678"/>
            <exon e_start="37590" e_stop="37525"/>
            <exon e_start="37427" e_stop="37353"/>
            <exon e_start="36974" e_stop="36848"/>
            <exon e_start="36766" e_stop="36720"/>
            <exon e_start="36612" e_stop="36555"/>
            <exon e_start="34454" e_stop="34405"/>
            <exon e_start="34292" e_stop="34236"/>
            <exon e_start="34121" e_stop="33266"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.699" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.922" acc_prob="0.926" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.870" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38624" e_stop="38552" e_length="73"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.998">
            <gDNA_intron_boundary i_start="38551" i_stop="37767" i_length="785"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37766" e_stop="37678" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37677" i_stop="37591" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37590" e_stop="37525" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="37524" i_stop="37428" i_length="97"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="37427" e_stop="37353" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="37352" i_stop="36975" i_length="378"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="36974" e_stop="36848" e_length="127"/>
          </exon>
          <intron i_serial="5" don_prob="0.977" acc_prob="0.993">
            <gDNA_intron_boundary i_start="36847" i_stop="36767" i_length="81"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="36766" e_stop="36720" e_length="47"/>
          </exon>
          <intron i_serial="6" don_prob="0.699" acc_prob="0.998">
            <gDNA_intron_boundary i_start="36719" i_stop="36613" i_length="107"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="36612" e_stop="36555" e_length="58"/>
          </exon>
          <intron i_serial="7" don_prob="0.922" acc_prob="0.926">
            <gDNA_intron_boundary i_start="36554" i_stop="34455" i_length="2100"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="34454" e_stop="34405" e_length="50"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.959">
            <gDNA_intron_boundary i_start="34404" i_stop="34293" i_length="112"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="34292" e_stop="34236" e_length="57"/>
          </exon>
          <intron i_serial="9" don_prob="0.870" acc_prob="0.999">
            <gDNA_intron_boundary i_start="34235" i_stop="34122" i_length="114"/>
          </intron>
          <exon e_serial="10" e_score="0.917">
            <gDNA_exon_boundary e_start="34121" e_stop="33266" e_length="856"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38624" stop="38552"/>
              <exon start="37766" stop="37678"/>
              <exon start="37590" stop="37525"/>
              <exon start="37427" stop="37353"/>
              <exon start="36974" stop="36848"/>
              <exon start="36766" stop="36720"/>
              <exon start="36612" stop="36555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38614" stop="38552"/>
              <exon start="37766" stop="37678"/>
              <exon start="37590" stop="37525"/>
              <exon start="37427" stop="37353"/>
              <exon start="36974" stop="36848"/>
              <exon start="36766" stop="36720"/>
              <exon start="36612" stop="36555"/>
              <exon start="34454" stop="34405"/>
              <exon start="34292" stop="34248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38613" stop="38552"/>
              <exon start="37766" stop="37678"/>
              <exon start="37590" stop="37525"/>
              <exon start="37427" stop="37353"/>
              <exon start="36974" stop="36848"/>
              <exon start="36766" stop="36720"/>
              <exon start="36612" stop="36555"/>
              <exon start="34454" stop="34405"/>
              <exon start="34292" stop="34236"/>
              <exon start="34121" stop="34116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38613" stop="38552"/>
              <exon start="37766" stop="37678"/>
              <exon start="37590" stop="37525"/>
              <exon start="37427" stop="37353"/>
              <exon start="36974" stop="36848"/>
              <exon start="36766" stop="36720"/>
              <exon start="36612" stop="36555"/>
              <exon start="34454" stop="34429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38613" stop="38552"/>
              <exon start="37766" stop="37678"/>
              <exon start="37590" stop="37525"/>
              <exon start="37427" stop="37353"/>
              <exon start="36974" stop="36852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38613" stop="38552"/>
              <exon start="37766" stop="37678"/>
              <exon start="37590" stop="37525"/>
              <exon start="37427" stop="37353"/>
              <exon start="36974" stop="36887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38612" stop="38552"/>
              <exon start="37766" stop="37678"/>
              <exon start="37590" stop="37525"/>
              <exon start="37427" stop="37353"/>
              <exon start="36974" stop="36848"/>
              <exon start="36766" stop="36720"/>
              <exon start="36612" stop="36589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38612" stop="38552"/>
              <exon start="37766" stop="37678"/>
              <exon start="37590" stop="37525"/>
              <exon start="37427" stop="37370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594918" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38610" stop="38552"/>
              <exon start="37766" stop="37678"/>
              <exon start="37590" stop="37525"/>
              <exon start="37427" stop="37353"/>
              <exon start="36974" stop="36848"/>
              <exon start="36766" stop="36720"/>
              <exon start="36612" stop="36601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38607" stop="38552"/>
              <exon start="37766" stop="37678"/>
              <exon start="37590" stop="37525"/>
              <exon start="37427" stop="37353"/>
              <exon start="36974" stop="36848"/>
              <exon start="36766" stop="36720"/>
              <exon start="36612" stop="36555"/>
              <exon start="34454" stop="34405"/>
              <exon start="34292" stop="34260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38602" stop="38552"/>
              <exon start="37766" stop="37678"/>
              <exon start="37590" stop="37525"/>
              <exon start="37427" stop="37353"/>
              <exon start="36974" stop="36848"/>
              <exon start="36766" stop="36720"/>
              <exon start="36612" stop="36555"/>
              <exon start="34454" stop="34421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38601" stop="38552"/>
              <exon start="37766" stop="37678"/>
              <exon start="37590" stop="37525"/>
              <exon start="37427" stop="37353"/>
              <exon start="36974" stop="36848"/>
              <exon start="36766" stop="36720"/>
              <exon start="36612" stop="36555"/>
              <exon start="34454" stop="34405"/>
              <exon start="34292" stop="34236"/>
              <exon start="34121" stop="34053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38583" stop="38552"/>
              <exon start="37766" stop="37678"/>
              <exon start="37590" stop="37525"/>
              <exon start="37427" stop="37353"/>
              <exon start="36974" stop="36932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38581" stop="38552"/>
              <exon start="37766" stop="37678"/>
              <exon start="37590" stop="37525"/>
              <exon start="37427" stop="37353"/>
              <exon start="36974" stop="36848"/>
              <exon start="36766" stop="36720"/>
              <exon start="36612" stop="36569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38573" stop="38552"/>
              <exon start="37766" stop="37678"/>
              <exon start="37590" stop="37525"/>
              <exon start="37427" stop="37353"/>
              <exon start="36974" stop="36848"/>
              <exon start="36766" stop="36720"/>
              <exon start="36612" stop="36555"/>
              <exon start="34454" stop="34405"/>
              <exon start="34292" stop="34236"/>
              <exon start="34121" stop="34115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38563" stop="38552"/>
              <exon start="37766" stop="37678"/>
              <exon start="37590" stop="37525"/>
              <exon start="37427" stop="37353"/>
              <exon start="36974" stop="36848"/>
              <exon start="36766" stop="36720"/>
              <exon start="36612" stop="36555"/>
              <exon start="34454" stop="34405"/>
              <exon start="34292" stop="34236"/>
              <exon start="34121" stop="34034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37360" stop="37353"/>
              <exon start="36974" stop="36848"/>
              <exon start="36766" stop="36720"/>
              <exon start="36612" stop="36555"/>
              <exon start="34454" stop="34405"/>
              <exon start="34292" stop="34271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36960" stop="36848"/>
              <exon start="36766" stop="36720"/>
              <exon start="36612" stop="36555"/>
              <exon start="34454" stop="34405"/>
              <exon start="34292" stop="34278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34089" stop="33266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34089" stop="33461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403584" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAACCCTAACCTTCAAAATTCTCCTTCTCTAAGCGCTCTGTGTTTTCATCCTTCATCAATCTTCTAGTAAAG : GAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCTGGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAG : TATGGCCCGATAGCACATATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAG : TTTGAAGAGGCACGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGG : GTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTCAGATCGTTATAATAGTGGCAATAATAGTGGCCATAATGGTGGTCGTAATAATCACAAATTTGGAGCGCCCAAACGTACCGAGTATCGAG : TTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAG : GATCATATGCGTCGAGCTGGGGATGTTTGTTTCTCACAAGTTTTCCGTGAGGGGAGTG : GGACCACTGGGATTGTGGATTATACCAACTATGACGACATGAAATATGCT : ATAAAAAAACTTGATGAATCTGAGTTTCGGAATGCTTTTTCTCGTTCAACAATTCGG : GTGAAGGAACATGATTCTAGAAGCCGCAGCCGCAGCCGTTCTTACTCGAGAGGAAAGAGTGGTAGCCGTAGCCGCAGTCGAAGTTACAGTCGCAGCCGGAGCAGAAGGTATGTATTATGTAGTTTGCACGTTTTATAGCTTGTTACTTCACCTTTGAATGCTACTATGTATCTCATTGCTGCTCTTTCCTAGCAGCAAATCTCCTAAAGCTAAGTCGTCAAAGCGTACAAGATCTCGTTCTAGATCTGTCTCTTCTCAGCCCCGTTCTGGGTTAAAAGGACGCTCTTTGTCAAGGTAATCTTTCTTACTGGTCATATCTACCCATTTTGTTGTTGGGGCAGGTTATGTAAAAGTAGCATATAGTACAAGGTTAATGTATATTTTTATGCAAGTCCTTGTACTGGTCTTTTTTTGAGTCAAAAGTCCTTGTGTCTATCAGTTTATCTTAATCATTTTAATCTTTTCTTTGTGAAAGCCACCTGGGAATTAACTGTTGCATCTTGCACCTCATTTATTTAGTGGGAAATCAGCTGAGCACTTTGTTTCCAACCCTTAATCTTGACTAGACTTTGTATAGTTGTGGACATGAGATGGCTTTGAAGCAAAAAGTTGTTTTGCAGTGTGACCAATTTAACATTTTCACACAAGTTGGTTGTAAATTTCACAAATTCAAATTGCAAATTGCATCTGCAAAATGATTTCAATTGTTCCTCCTTTTTGATTTTTCGAGAAGCATTATATTGGTTGTACATTATTTATGATTGATGTGGTAAGTCTTGGCCCGACAACGGCCTTCTTTCCCATATATAGAGTAACAGATCATGTGTACTGCGTATGAACATTAAGGTTCTGATCN</gDNA_template>
            <first_frame> K  T  L  T  F  K  I  L  L  L  *  A  L  C  V  F  I  L  H  Q  S  S  S  K   : G  T  M  S  R  S  S  R  T  I  Y  V  G  N  L  P  G  D  I  R  E  R  E  V  E  D  L  F  Y  K  :  Y  G  P  I  A  H  I  D  L  K  I  P  P  R  P  P  G  Y  A  F  V  E  :  F  E  E  A  R  D  A  E  D  A  I  R  G  R  D  G  Y  E  F  D  G  H  R  L  R  :  V  E  L  A  H  G  G  R  G  N  S  S  S  D  R  Y  N  S  G  N  N  S  G  H  N  G  G  R  N  N  H  K  F  G  A  P  K  R  T  E  Y  R   : V  L  V  T  G  L  P  H  S  A  S  W  Q  D  L  K  :  D  H  M  R  R  A  G  D  V  C  F  S  Q  V  F  R  E  G  S   : G  T  T  G  I  V  D  Y  T  N  Y  D  D  M  K  Y  A  :  I  K  K  L  D  E  S  E  F  R  N  A  F  S  R  S  T  I  R  :  V  K  E  H  D  S  R  S  R  S  R  S  R  S  Y  S  R  G  K  S  G  S  R  S  R  S  R  S  Y  S  R  S  R  S  R  R  Y  V  L  C  S  L  H  V  L  *  L  V  T  S  P  L  N  A  T  M  Y  L  I  A  A  L  S  *  Q  Q  I  S  *  S  *  V  V  K  A  Y  K  I  S  F  *  I  C  L  F  S  A  P  F  W  V  K  R  T  L  F  V  K  V  I  F  L  T  G  H  I  Y  P  F  C  C  W  G  R  L  C  K  S  S  I  *  Y  K  V  N  V  Y  F  Y  A  S  P  C  T  G  L  F  L  S  Q  K  S  L  C  L  S  V  Y  L  N  H  F  N  L  F  F  V  K  A  T  W  E  L  T  V  A  S  C  T  S  F  I  *  W  E  I  S  *  A  L  C  F  Q  P  L  I  L  T  R  L  C  I  V  V  D  M  R  W  L  *  S  K  K  L  F  C  S  V  T  N  L  T  F  S  H  K  L  V  V  N  F  T  N  S  N  C  K  L  H  L  Q  N  D  F  N  C  S  S  F  L  I  F  R  E  A  L  Y  W  L  Y  I  I  Y  D  *  C  G  K  S  W  P  D  N  G  L  L  S  H  I  *  S  N  R  S  C  V  L  R  M  N  I  K  V  L  I  </first_frame>
            <second_frame>  K  P  *  P  S  K  F  S  F  S  K  R  S  V  F  S  S  F  I  N  L  L  V  K  :  E  Q  *  V  V  Q  V  G  R  F  M  L  V  I  F  L  V  I  F  V  S  E  K  W  R  I  C  S  T  S :   M  A  R  *  H  I  L  I  *  K  F  H  Q  D  P  Q  V  M  L  L  L  S :   L  K  R  H  A  M  L  R  M  L  F  V  G  A  M  A  M  N  L  M  G  I  V  *  G :   L  S  L  H  M  V  G  V  V  T  H  R  Q  I  V  I  I  V  A  I  I  V  A  I  M  V  V  V  I  I  T  N  L  E  R  P  N  V  P  S  I  E  :  F  *  L  P  D  C  P  I  Q  H  P  G  R  I  S  R :   I  I  C  V  E  L  G  M  F  V  S  H  K  F  S  V  R  G  V  :  G  P  L  G  L  W  I  I  P  T  M  T  T  *  N  M  L :   *  K  N  L  M  N  L  S  F  G  M  L  F  L  V  Q  Q  F  G :   *  R  N  M  I  L  E  A  A  A  A  A  V  L  T  R  E  E  R  V  V  A  V  A  A  V  E  V  T  V  A  A  G  A  E  G  M  Y  Y  V  V  C  T  F  Y  S  L  L  L  H  L  *  M  L  L  C  I  S  L  L  L  F  P  S  S  K  S  P  K  A  K  S  S  K  R  T  R  S  R  S  R  S  V  S  S  Q  P  R  S  G  L  K  G  R  S  L  S  R  *  S  F  L  L  V  I  S  T  H  F  V  V  G  A  G  Y  V  K  V  A  Y  S  T  R  L  M  Y  I  F  M  Q  V  L  V  L  V  F  F  *  V  K  S  P  C  V  Y  Q  F  I  L  I  I  L  I  F  S  L  *  K  P  P  G  N  *  L  L  H  L  A  P  H  L  F  S  G  K  S  A  E  H  F  V  S  N  P  *  S  *  L  D  F  V  *  L  W  T  *  D  G  F  E  A  K  S  C  F  A  V  *  P  I  *  H  F  H  T  S  W  L  *  I  S  Q  I  Q  I  A  N  C  I  C  K  M  I  S  I  V  P  P  F  *  F  F  E  K  H  Y  I  G  C  T  L  F  M  I  D  V  V  S  L  G  P  T  T  A  F  F  P  I  Y  R  V  T  D  H  V  Y  C  V  *  T  L  R  F  *  S </second_frame>
            <third_frame>   N  P  N  L  Q  N  S  P  S  L  S  A  L  C  F  H  P  S  S  I  F  *  *  R :   N  N  E  S  F  K  *  D  D  L  C  W  *  S  S  W  *  Y  S  *  A  R  S  G  G  S  V  L  Q   : V  W  P  D  S  T  Y  *  S  E  N  S  T  K  T  P  R  L  C  F  C  *   : V  *  R  G  T  R  C  *  G  C  Y  S  W  A  R  W  L  *  I  *  W  A  S  F  E   : G  *  A  C  T  W  W  A  W  *  L  I  V  R  S  L  *  *  W  Q  *  *  W  P  *  W  W  S  *  *  S  Q  I  W  S  A  Q  T  Y  R  V  S  S :   F  S  Y  R  I  A  P  F  S  I  L  A  G  S  Q   : G  S  Y  A  S  S  W  G  C  L  F  L  T  S  F  P  *  G  E  W :   D  H  W  D  C  G  L  Y  Q  L  *  R  H  E  I  C   : Y  K  K  T  *  *  I  *  V  S  E  C  F  F  S  F  N  N  S   : G  E  G  T  *  F  *  K  P  Q  P  Q  P  F  L  L  E  R  K  E  W  *  P  *  P  Q  S  K  L  Q  S  Q  P  E  Q  K  V  C  I  M  *  F  A  R  F  I  A  C  Y  F  T  F  E  C  Y  Y  V  S  H  C  C  S  F  L  A  A  N  L  L  K  L  S  R  Q  S  V  Q  D  L  V  L  D  L  S  L  L  S  P  V  L  G  *  K  D  A  L  C  Q  G  N  L  S  Y  W  S  Y  L  P  I  L  L  L  G  Q  V  M  *  K  *  H  I  V  Q  G  *  C  I  F  L  C  K  S  L  Y  W  S  F  F  E  S  K  V  L  V  S  I  S  L  S  *  S  F  *  S  F  L  C  E  S  H  L  G  I  N  C  C  I  L  H  L  I  Y  L  V  G  N  Q  L  S  T  L  F  P  T  L  N  L  D  *  T  L  Y  S  C  G  H  E  M  A  L  K  Q  K  V  V  L  Q  C  D  Q  F  N  I  F  T  Q  V  G  C  K  F  H  K  F  K  L  Q  I  A  S  A  K  *  F  Q  L  F  L  L  F  D  F  S  R  S  I  I  L  V  V  H  Y  L  *  L  M  W  *  V  L  A  R  Q  R  P  S  F  P  Y  I  E  *  Q  I  M  C  T  A  Y  E  H  *  G  S  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0115P13.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38591" stop="38552"/>
                    <exon start="37766" stop="37678"/>
                    <exon start="37590" stop="37525"/>
                    <exon start="37427" stop="37353"/>
                    <exon start="36974" stop="36848"/>
                    <exon start="36766" stop="36720"/>
                    <exon start="36612" stop="36555"/>
                    <exon start="34454" stop="34405"/>
                    <exon start="34292" stop="34236"/>
                    <exon start="34121" stop="33984"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>744</number_coding_nucleotides>
                  <number_encoded_amino_acids>248</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALCVFILHQSSSKGTMSRSSRTIYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYEFDGHRLRVELAHGGRGNSSSDRYNSGNNSGHNGGRNNHKFGAPKRTEYRVLVTGLPHSASWQDLKDHMRRAGDVCFSQVFREGSGTTGIVDYTNYDDMKYAIKKLDESEFRNAFSRSTIRVKEHDSRSRSRSRSYSRGKSGSRSRSRSYSRSRSRRYVLCSLHVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="48728" PGL_stop="49673"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48728" e_stop="49050"/>
            <exon e_start="49594" e_stop="49673"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.923"/>
          <exon-only e_score="0.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="48728" e_stop="49050" e_length="323"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="49051" i_stop="49593" i_length="543"/>
          </intron>
          <exon e_serial="2" e_score="0.000">
            <gDNA_exon_boundary e_start="49594" e_stop="49673" e_length="80"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48728" stop="49050"/>
              <exon start="49594" stop="49673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357559" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGTCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATACCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTACTTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAAACCCAAATCTTGAAAAATCCTAATCTCTTTGTTAATAATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAACTATGAGATTGATGATGTCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTAGGGGATCGGGTGCCAC : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> *  S  S  V  E  V  G  Y  G  F  S  Y  D  I  R  S  K  L  L  I  P  N  D  M  Y  *  *  Y  C  K  P  C  Y  V  L  T  C  M  L  A  *  M  *  L  Y  N  C  D  Y  I  S  M  M  K  L  L  K  P  K  S  *  K  I  L  I  S  L  L  I  M  R  P  W  Y  K  R  R  R  D  E  L  K  L  *  D  *  *  C  L  G  K  K  E  G  L  M  N  *  *  K  E  I  R  G  S  G  A  T :   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </first_frame>
            <second_frame>  S  L  R  W  R  *  V  M  V  S  L  T  I  F  V  V  N  S  *  Y  R  M  I  C  I  D  N  I  V  N  P  A  M  C  L  L  V  C  L  H  E  C  N  Y  I  I  V  I  I  *  A  *  *  S  Y  *  N  P  N  L  E  K  S  *  S  L  C  *  *  *  G  L  G  I  K  E  G  V  M  N  *  N  Y  E  I  D  D  V  L  V  R  K  K  A  *  *  I  D  R  R  R  L  G  D  R  V  P   : L  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </second_frame>
            <third_frame>   V  F  G  G  G  R  L  W  F  L  L  R  Y  S  *  *  T  L  N  T  E  *  Y  V  L  I  I  L  *  T  L  L  C  A  Y  L  Y  A  C  M  N  V  I  I  *  L  *  L  Y  K  H  D  E  V  I  E  T  Q  I  L  K  N  P  N  L  F  V  N  N  E  A  L  V  *  K  K  A  *  *  T  K  T  M  R  L  M  M  S  W  *  E  R  R  L  D  E  L  I  E  G  D  *  G  I  G  C  H  :  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLm0115P13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="49876" PGL_stop="55728"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49876" e_stop="50532"/>
            <exon e_start="51412" e_stop="51779"/>
            <exon e_start="54161" e_stop="54373"/>
            <exon e_start="54859" e_stop="55728"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.972" acc_prob="0.990" e_score="0.997"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.886" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="49876" e_stop="50532" e_length="657"/>
          </exon>
          <intron i_serial="1" don_prob="0.972" acc_prob="0.990">
            <gDNA_intron_boundary i_start="50533" i_stop="51411" i_length="879"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51412" e_stop="51779" e_length="368"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="51780" i_stop="54160" i_length="2381"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54161" e_stop="54373" e_length="213"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="0.886">
            <gDNA_intron_boundary i_start="54374" i_stop="54858" i_length="485"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="54859" e_stop="55728" e_length="870"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49876" stop="50374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49903" stop="50370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49904" stop="50387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49906" stop="50176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49914" stop="50362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49916" stop="50530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49917" stop="50532"/>
              <exon start="51412" stop="51493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49917" stop="50532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49917" stop="50370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49922" stop="50484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49937" stop="50375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50106" stop="50532"/>
              <exon start="51412" stop="51670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50387" stop="50532"/>
              <exon start="51412" stop="51779"/>
              <exon start="54161" stop="54186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50413" stop="50532"/>
              <exon start="51412" stop="51779"/>
              <exon start="54161" stop="54332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51525" stop="51779"/>
              <exon start="54161" stop="54302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51570" stop="51779"/>
              <exon start="54161" stop="54373"/>
              <exon start="54859" stop="54930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54161" stop="54373"/>
              <exon start="54859" stop="55249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54161" stop="54373"/>
              <exon start="54859" stop="55158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54181" stop="54373"/>
              <exon start="54859" stop="55373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55225" stop="55728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277474" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTACTCATTTCCACCACAAAGTTCCCAAAATGTATATCCAAAAAGAGAAACCTTCACTTTCTCTTGCTCTTTCATTCATTTTCTTGCTCACATTCTTCTTTCCCCCAAAATCATTATTAGTATCAAGTACTCAACAAATTCATGTTCACAAAAACATCCAAATTGCAAATTCACATTGCCAAGACACACTTTACCCTAAGCTTTGCATTTCCACTCTTTCATTAATCCCAAATCTTCATAAAAAATCAATTCCAGAAATCATATCTTCCAATGTCAATGTCACAATGAATGAAGTCAAATCCTCTGCTGAAAATTGCTCTAACATACTTCACCATATGTCCAAATTGGACCCTATTGAGAAAAGGGCATTAGATGATTGTATTGAACTTTTAGGTGATACAACTATTGATGAGTTACAAACAACTCTTAATGATCTTTCTACTAAAAATAGTAGTAATTCACCTTTAAAGCACTATAATGATCTACAAACACTTCTTAGTGGTGCAATGACAAATCAAGATACTTGTCTTGAAGGAATTCACAAAAGTAAACACAAATTGAGTCAATACATTGAGAAGAACTTGCATACAATATCTCATCATGTGAGCAACTCTCTTGCCATGCTTAAGAAGTTAAAGACAGGGTCGTCTCAAGG : GTCGTCATCAAACTCTAATGAAGTCTTCCCCGAGTACGGCACCATGAAGAATGGGTACCCAAAATGGTTGCAAAAAAAGGACCGGACCCTTTTACAAGCTCCGTTGAACCAAATTAAGTTCAATTTGGTTGTGGCTAAAGATGGTAGTGGTAATTTTACTACTATTAATGCAGCGTTAAGTGCTGCACCAAATTCTTCTAGTACAAGATTTGTGATTTACATCAAGGCGGGAACGTATTTCGAATATATTGACGTAGAAAGAAAGAAAAGTATGATAATGTTCATCGGAGATGGGATCGGAAAAACAGTAATAAAGGGTAATCGGAACGTCGTAGATGGATGGACTACTTTCCGATCAGCTACCGTTG : CTGTGGTGGGAAATGGATTCTTAGCTAGAGGCATTACGTTTGAGAACTATGCCGGACCAAGCAAGCACCAAGCGGTGGCGCTGCGGAGCGGCTCCGACCTATCGGCGTTCTACCAATGTAGCTTTATTGCCTATCAAGACACCCTCTACGTCCACTCACTTCGACAATTCTATCGCGATTGCGATGTCTATGGGACGGTTGACTTCATTTTTG : GTAATGCAGCTGTTGTTCTCCAGAATTGTAACTTGTATGCTCGTAAACCTAACCCGAATCAGAAGAACATGTTCACGGCACAAGGAAGAGAAGATCCAAATCAAAACACTGGAATTTCAATCTTGAATTGTAAAGTGGAAGCTGCATCGGATTTAGTTCCTGTTGTATCGTCATTCAAAAATTACTTAGGACGACCATGGAAACAATATTCAAGAACTGTAATTCTCATATCCAATATTGGAAGCTTAATTGATCCTGCTGGTTGGTTAGAATGGAGTGGTGATTTTGCATTGAACACACTTTATTATGGAGAGTATTTGAACCGGGGACCCGGTTCAAATACTAGTGCTAGAGTAAAATGGCCCGGTTATCGGGTCATTAATAGCTCTAGTGAGGCCAGTCAATTCACTGTTGGAAATTTTATTCAAGGGAGTGAGTGGATACCTGCTACCGGGGTGCCATTTTATTCTGGTTTGACTTCCTCTTGAATACATTATTTTAAATCAGCGACCGCTGAGGGTTTATCTTATAGGGTATTTATTAATATAATTTTTATCAAAAATATCAACAACTTATGGGGTATTTATTAATATATATACCTTGGAGATAACAACCACAATAGTTACTAGTCTGGTTCATTGCTTGCATATGTTCATGTGTTAAGATTTTTCTTAGCATATGTTGTTTTAGCTTGTTTTCCTATTGAGAATATATATATATATATATATATATATATTATAATATTTCTTTTTGTGAGAAATTTGATGTCAGAGCTTCATTTCTTGAGGAATTGTTAATGTCAATGAATGTAGTGCCAATATAAGTTTGATCTTTATCATGAATAAATTTTGAATGTATTTATTTATATAA</gDNA_template>
            <first_frame> Y  Y  S  F  P  P  Q  S  S  Q  N  V  Y  P  K  R  E  T  F  T  F  S  C  S  F  I  H  F  L  A  H  I  L  L  S  P  K  I  I  I  S  I  K  Y  S  T  N  S  C  S  Q  K  H  P  N  C  K  F  T  L  P  R  H  T  L  P  *  A  L  H  F  H  S  F  I  N  P  K  S  S  *  K  I  N  S  R  N  H  I  F  Q  C  Q  C  H  N  E  *  S  Q  I  L  C  *  K  L  L  *  H  T  S  P  Y  V  Q  I  G  P  Y  *  E  K  G  I  R  *  L  Y  *  T  F  R  *  Y  N  Y  *  *  V  T  N  N  S  *  *  S  F  Y  *  K  *  *  *  F  T  F  K  A  L  *  *  S  T  N  T  S  *  W  C  N  D  K  S  R  Y  L  S  *  R  N  S  Q  K  *  T  Q  I  E  S  I  H  *  E  E  L  A  Y  N  I  S  S  C  E  Q  L  S  C  H  A  *  E  V  K  D  R  V  V  S  R  :  V  V  I  K  L  *  *  S  L  P  R  V  R  H  H  E  E  W  V  P  K  M  V  A  K  K  G  P  D  P  F  T  S  S  V  E  P  N  *  V  Q  F  G  C  G  *  R  W  *  W  *  F  Y  Y  Y  *  C  S  V  K  C  C  T  K  F  F  *  Y  K  I  C  D  L  H  Q  G  G  N  V  F  R  I  Y  *  R  R  K  K  E  K  Y  D  N  V  H  R  R  W  D  R  K  N  S  N  K  G  *  S  E  R  R  R  W  M  D  Y  F  P  I  S  Y  R  C :   C  G  G  K  W  I  L  S  *  R  H  Y  V  *  E  L  C  R  T  K  Q  A  P  S  G  G  A  A  E  R  L  R  P  I  G  V  L  P  M  *  L  Y  C  L  S  R  H  P  L  R  P  L  T  S  T  I  L  S  R  L  R  C  L  W  D  G  *  L  H  F  W :   *  C  S  C  C  S  P  E  L  *  L  V  C  S  *  T  *  P  E  S  E  E  H  V  H  G  T  R  K  R  R  S  K  S  K  H  W  N  F  N  L  E  L  *  S  G  S  C  I  G  F  S  S  C  C  I  V  I  Q  K  L  L  R  T  T  M  E  T  I  F  K  N  C  N  S  H  I  Q  Y  W  K  L  N  *  S  C  W  L  V  R  M  E  W  *  F  C  I  E  H  T  L  L  W  R  V  F  E  P  G  T  R  F  K  Y  *  C  *  S  K  M  A  R  L  S  G  H  *  *  L  *  *  G  Q  S  I  H  C  W  K  F  Y  S  R  E  *  V  D  T  C  Y  R  G  A  I  L  F  W  F  D  F  L  L  N  T  L  F  *  I  S  D  R  *  G  F  I  L  *  G  I  Y  *  Y  N  F  Y  Q  K  Y  Q  Q  L  M  G  Y  L  L  I  Y  I  P  W  R  *  Q  P  Q  *  L  L  V  W  F  I  A  C  I  C  S  C  V  K  I  F  L  S  I  C  C  F  S  L  F  S  Y  *  E  Y  I  Y  I  Y  I  Y  I  Y  Y  N  I  S  F  C  E  K  F  D  V  R  A  S  F  L  E  E  L  L  M  S  M  N  V  V  P  I  *  V  *  S  L  S  *  I  N  F  E  C  I  Y  L  Y   </first_frame>
            <second_frame>  I  T  H  F  H  H  K  V  P  K  M  Y  I  Q  K  E  K  P  S  L  S  L  A  L  S  F  I  F  L  L  T  F  F  F  P  P  K  S  L  L  V  S  S  T  Q  Q  I  H  V  H  K  N  I  Q  I  A  N  S  H  C  Q  D  T  L  Y  P  K  L  C  I  S  T  L  S  L  I  P  N  L  H  K  K  S  I  P  E  I  I  S  S  N  V  N  V  T  M  N  E  V  K  S  S  A  E  N  C  S  N  I  L  H  H  M  S  K  L  D  P  I  E  K  R  A  L  D  D  C  I  E  L  L  G  D  T  T  I  D  E  L  Q  T  T  L  N  D  L  S  T  K  N  S  S  N  S  P  L  K  H  Y  N  D  L  Q  T  L  L  S  G  A  M  T  N  Q  D  T  C  L  E  G  I  H  K  S  K  H  K  L  S  Q  Y  I  E  K  N  L  H  T  I  S  H  H  V  S  N  S  L  A  M  L  K  K  L  K  T  G  S  S  Q  G :   S  S  S  N  S  N  E  V  F  P  E  Y  G  T  M  K  N  G  Y  P  K  W  L  Q  K  K  D  R  T  L  L  Q  A  P  L  N  Q  I  K  F  N  L  V  V  A  K  D  G  S  G  N  F  T  T  I  N  A  A  L  S  A  A  P  N  S  S  S  T  R  F  V  I  Y  I  K  A  G  T  Y  F  E  Y  I  D  V  E  R  K  K  S  M  I  M  F  I  G  D  G  I  G  K  T  V  I  K  G  N  R  N  V  V  D  G  W  T  T  F  R  S  A  T  V   : A  V  V  G  N  G  F  L  A  R  G  I  T  F  E  N  Y  A  G  P  S  K  H  Q  A  V  A  L  R  S  G  S  D  L  S  A  F  Y  Q  C  S  F  I  A  Y  Q  D  T  L  Y  V  H  S  L  R  Q  F  Y  R  D  C  D  V  Y  G  T  V  D  F  I  F   : G  N  A  A  V  V  L  Q  N  C  N  L  Y  A  R  K  P  N  P  N  Q  K  N  M  F  T  A  Q  G  R  E  D  P  N  Q  N  T  G  I  S  I  L  N  C  K  V  E  A  A  S  D  L  V  P  V  V  S  S  F  K  N  Y  L  G  R  P  W  K  Q  Y  S  R  T  V  I  L  I  S  N  I  G  S  L  I  D  P  A  G  W  L  E  W  S  G  D  F  A  L  N  T  L  Y  Y  G  E  Y  L  N  R  G  P  G  S  N  T  S  A  R  V  K  W  P  G  Y  R  V  I  N  S  S  S  E  A  S  Q  F  T  V  G  N  F  I  Q  G  S  E  W  I  P  A  T  G  V  P  F  Y  S  G  L  T  S  S  *  I  H  Y  F  K  S  A  T  A  E  G  L  S  Y  R  V  F  I  N  I  I  F  I  K  N  I  N  N  L  W  G  I  Y  *  Y  I  Y  L  G  D  N  N  H  N  S  Y  *  S  G  S  L  L  A  Y  V  H  V  L  R  F  F  L  A  Y  V  V  L  A  C  F  P  I  E  N  I  Y  I  Y  I  Y  I  Y  I  I  I  F  L  F  V  R  N  L  M  S  E  L  H  F  L  R  N  C  *  C  Q  *  M  *  C  Q  Y  K  F  D  L  Y  H  E  *  I  L  N  V  F  I  Y  I  </second_frame>
            <third_frame>   L  L  I  S  T  T  K  F  P  K  C  I  S  K  K  R  N  L  H  F  L  L  L  F  H  S  F  S  C  S  H  S  S  F  P  Q  N  H  Y  *  Y  Q  V  L  N  K  F  M  F  T  K  T  S  K  L  Q  I  H  I  A  K  T  H  F  T  L  S  F  A  F  P  L  F  H  *  S  Q  I  F  I  K  N  Q  F  Q  K  S  Y  L  P  M  S  M  S  Q  *  M  K  S  N  P  L  L  K  I  A  L  T  Y  F  T  I  C  P  N  W  T  L  L  R  K  G  H  *  M  I  V  L  N  F  *  V  I  Q  L  L  M  S  Y  K  Q  L  L  M  I  F  L  L  K  I  V  V  I  H  L  *  S  T  I  M  I  Y  K  H  F  L  V  V  Q  *  Q  I  K  I  L  V  L  K  E  F  T  K  V  N  T  N  *  V  N  T  L  R  R  T  C  I  Q  Y  L  I  M  *  A  T  L  L  P  C  L  R  S  *  R  Q  G  R  L  K   : G  R  H  Q  T  L  M  K  S  S  P  S  T  A  P  *  R  M  G  T  Q  N  G  C  K  K  R  T  G  P  F  Y  K  L  R  *  T  K  L  S  S  I  W  L  W  L  K  M  V  V  V  I  L  L  L  L  M  Q  R  *  V  L  H  Q  I  L  L  V  Q  D  L  *  F  T  S  R  R  E  R  I  S  N  I  L  T  *  K  E  R  K  V  *  *  C  S  S  E  M  G  S  E  K  Q  *  *  R  V  I  G  T  S  *  M  D  G  L  L  S  D  Q  L  P  L  :  L  W  W  E  M  D  S  *  L  E  A  L  R  L  R  T  M  P  D  Q  A  S  T  K  R  W  R  C  G  A  A  P  T  Y  R  R  S  T  N  V  A  L  L  P  I  K  T  P  S  T  S  T  H  F  D  N  S  I  A  I  A  M  S  M  G  R  L  T  S  F  L  :  V  M  Q  L  L  F  S  R  I  V  T  C  M  L  V  N  L  T  R  I  R  R  T  C  S  R  H  K  E  E  K  I  Q  I  K  T  L  E  F  Q  S  *  I  V  K  W  K  L  H  R  I  *  F  L  L  Y  R  H  S  K  I  T  *  D  D  H  G  N  N  I  Q  E  L  *  F  S  Y  P  I  L  E  A  *  L  I  L  L  V  G  *  N  G  V  V  I  L  H  *  T  H  F  I  M  E  S  I  *  T  G  D  P  V  Q  I  L  V  L  E  *  N  G  P  V  I  G  S  L  I  A  L  V  R  P  V  N  S  L  L  E  I  L  F  K  G  V  S  G  Y  L  L  P  G  C  H  F  I  L  V  *  L  P  L  E  Y  I  I  L  N  Q  R  P  L  R  V  Y  L  I  G  Y  L  L  I  *  F  L  S  K  I  S  T  T  Y  G  V  F  I  N  I  Y  T  L  E  I  T  T  T  I  V  T  S  L  V  H  C  L  H  M  F  M  C  *  D  F  S  *  H  M  L  F  *  L  V  F  L  L  R  I  Y  I  Y  I  Y  I  Y  I  L  *  Y  F  F  L  *  E  I  *  C  Q  S  F  I  S  *  G  I  V  N  V  N  E  C  S  A  N  I  S  L  I  F  I  M  N  K  F  *  M  Y  L  F  I  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0115P13.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49877" stop="50532"/>
                    <exon start="51412" stop="51779"/>
                    <exon start="54161" stop="54373"/>
                    <exon start="54859" stop="55346"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1722</number_coding_nucleotides>
                  <number_encoded_amino_acids>574</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITHFHHKVPKMYIQKEKPSLSLALSFIFLLTFFFPPKSLLVSSTQQIHVHKNIQIANSHCQDTLYPKLCISTLSLIPNLHKKSIPEIISSNVNVTMNEVKSSAENCSNILHHMSKLDPIEKRALDDCIELLGDTTIDELQTTLNDLSTKNSSNSPLKHYNDLQTLLSGAMTNQDTCLEGIHKSKHKLSQYIEKNLHTISHHVSNSLAMLKKLKTGSSQGSSSNSNEVFPEYGTMKNGYPKWLQKKDRTLLQAPLNQIKFNLVVAKDGSGNFTTINAALSAAPNSSSTRFVIYIKAGTYFEYIDVERKKSMIMFIGDGIGKTVIKGNRNVVDGWTTFRSATVAVVGNGFLARGITFENYAGPSKHQAVALRSGSDLSAFYQCSFIAYQDTLYVHSLRQFYRDCDVYGTVDFIFGNAAVVLQNCNLYARKPNPNQKNMFTAQGREDPNQNTGISILNCKVEAASDLVPVVSSFKNYLGRPWKQYSRTVILISNIGSLIDPAGWLEWSGDFALNTLYYGEYLNRGPGSNTSARVKWPGYRVINSSSEASQFTVGNFIQGSEWIPATGVPFYSGLTSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="65174" PGL_stop="71082"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65174" e_stop="65432"/>
            <exon e_start="65540" e_stop="65848"/>
            <exon e_start="65933" e_stop="66222"/>
            <exon e_start="66361" e_stop="66580"/>
            <exon e_start="67636" e_stop="68045"/>
            <exon e_start="68239" e_stop="68270"/>
            <exon e_start="71001" e_stop="71082"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.131" e_score="0.974"/>
          <exon-intron don_prob="0.992" acc_prob="0.998" e_score="0.997"/>
          <exon-intron don_prob="0.991" acc_prob="0.994" e_score="0.991"/>
          <exon-intron don_prob="0.003" acc_prob="0.000" e_score="0.956"/>
          <exon-intron don_prob="0.000" acc_prob="0.758" e_score="0.719"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65174" e_stop="65432" e_length="259"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="1.000">
            <gDNA_intron_boundary i_start="65433" i_stop="65539" i_length="107"/>
          </intron>
          <exon e_serial="2" e_score="0.974">
            <gDNA_exon_boundary e_start="65540" e_stop="65848" e_length="309"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.131">
            <gDNA_intron_boundary i_start="65849" i_stop="65932" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="65933" e_stop="66222" e_length="290"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.998">
            <gDNA_intron_boundary i_start="66223" i_stop="66360" i_length="138"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="66361" e_stop="66580" e_length="220"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.994">
            <gDNA_intron_boundary i_start="66581" i_stop="67635" i_length="1055"/>
          </intron>
          <exon e_serial="5" e_score="0.956">
            <gDNA_exon_boundary e_start="67636" e_stop="68045" e_length="410"/>
          </exon>
          <intron i_serial="5" don_prob="0.003" acc_prob="0.000">
            <gDNA_intron_boundary i_start="68046" i_stop="68238" i_length="193"/>
          </intron>
          <exon e_serial="6" e_score="0.719">
            <gDNA_exon_boundary e_start="68239" e_stop="68270" e_length="32"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.758">
            <gDNA_intron_boundary i_start="68271" i_stop="71000" i_length="2730"/>
          </intron>
          <exon e_serial="7" e_score="0.667">
            <gDNA_exon_boundary e_start="71001" e_stop="71082" e_length="82"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65174" stop="65432"/>
              <exon start="65540" stop="65780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65179" stop="65432"/>
              <exon start="65540" stop="65726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65179" stop="65432"/>
              <exon start="65540" stop="65725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65179" stop="65432"/>
              <exon start="65540" stop="65665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65180" stop="65432"/>
              <exon start="65540" stop="65848"/>
              <exon start="65933" stop="66222"/>
              <exon start="66361" stop="66580"/>
              <exon start="67636" stop="68045"/>
              <exon start="68239" stop="68270"/>
              <exon start="71001" stop="71082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65180" stop="65432"/>
              <exon start="65540" stop="65733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65181" stop="65372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65184" stop="65432"/>
              <exon start="65540" stop="65748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65192" stop="65432"/>
              <exon start="65540" stop="65848"/>
              <exon start="65933" stop="65950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65289" stop="65432"/>
              <exon start="65540" stop="65679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359727" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTTCTTTAATTTCTCACTTTTTTTCTTCTTTATTTTTATTTTTTTCAATTTCCTATTTAGGCCACAACCACAATGGCTATTCCAAAAGGATTAGAAATCAATAATATTGTAGGATTATTCTTACTTTTGGGTATAGCCATTTTATCATCAAAAGTTGCAGAATGTGCACCTTTTGGTTCGCGTCGTGGCCTTATGGAGACAGTTTTCGATGTTACCAAGCACGGAGCTAGACCAGATCCCACTGCAGATAGCACTCGG : GGATTTATGATGGCATGGAGAGCAGCATGTCAATCAACAGGCCCAGCAAAAGTTGTTATTCCACCAGGAACATTTACTACAGGAGAAACTATTTTTCAAGGCCCATGTACATGTCCAAAGCCCATTATTATTGAAATTCAAGGGACAGTATTGTCAAATACAGACATAAGTTTGTACTCACGTGCCTCATGGATATCCCTCGAACACGTGGACGGTGTCGTTATTACAGGTGGCGGAACTCTAAACGGACAAGGAAATGCCAGCTGGCAGTATGCTGACAAAAGCGGAAACTCTCCTCCTCTCCCTACG : TCTCTTGTATTTCAAACTGTGAAGAGTTCTTCCATCAATGGCATAAATTTTGTGGATTCCAAAGGTGTCCATTTGAAAGTTACTGATAGTAATGACATTACAGTTTCAAAAATCAAGATTACAGCACCAGCAACAAGTCCAAATACTGATGGAATTCATATAAGTGAAACAATTAATATCAATGTTACTGATAGCAACATTGGGACAGGTGATGATTGCATTAGTGTTGGACATGGTACTACCAATATTTTTGTCAATAATATTCATTGTGGCCCTGGACATGGAATAAG : TATTGGAAGCCTTGGAAAGAGACCAGATGAGAAGGATGTTACAAAAGTTTATATAAAAAATTGTACATTCCACAGTACAACAAATGGTGCAAGAATCAAGACTTATATGGATTCATCTCCACTACAAGTTTCTGATGTTGTTTATGAAGATATTGTCTTGGAGGATGTTAAAAATCCAATTCTTATTGATCAACACTATAATTCCAAGAACAAGGTTGAG : CCATCAAAAGTGAAACTAAAAGATATTCACTTCAAGAACATAAGGGGGACAACAAATACAAAAGCTCCAGTATCACTTAATTGCAGTGAAGCAGCTCCATGTGAAGGAGTTGAATTGGCTGATATTGATATAGCTCCATCTGGTACAACTGGACCTCTACAAGGAGCAACATGTCAAAATGCCAAGACAGTATTCAATGGAAAAACTAATGTTCCAGCATGTAAATAATTACATTACATTATTAATCAAATCATGTCCATATGAAAAAATGTGTATAAATTTCAATATAACCATGTAATTTTGTTTATGGTTTATTATAATATTTATTTATATTTTTTTTTTCGATGCCTGGAAATAGAAAAAAAAGAAGAAGATAAAATTTAGCGCTTGACGCATATTAGCTAGTTAGG : TATATAGTAAAGGTTATTTTCTAATGGAAAAT : ATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> P  S  L  I  S  H  F  F  S  S  L  F  L  F  F  S  I  S  Y  L  G  H  N  H  N  G  Y  S  K  R  I  R  N  Q  *  Y  C  R  I  I  L  T  F  G  Y  S  H  F  I  I  K  S  C  R  M  C  T  F  W  F  A  S  W  P  Y  G  D  S  F  R  C  Y  Q  A  R  S  *  T  R  S  H  C  R  *  H  S   : G  I  Y  D  G  M  E  S  S  M  S  I  N  R  P  S  K  S  C  Y  S  T  R  N  I  Y  Y  R  R  N  Y  F  S  R  P  M  Y  M  S  K  A  H  Y  Y  *  N  S  R  D  S  I  V  K  Y  R  H  K  F  V  L  T  C  L  M  D  I  P  R  T  R  G  R  C  R  Y  Y  R  W  R  N  S  K  R  T  R  K  C  Q  L  A  V  C  *  Q  K  R  K  L  S  S  S  P  Y   : V  S  C  I  S  N  C  E  E  F  F  H  Q  W  H  K  F  C  G  F  Q  R  C  P  F  E  S  Y  *  *  *  *  H  Y  S  F  K  N  Q  D  Y  S  T  S  N  K  S  K  Y  *  W  N  S  Y  K  *  N  N  *  Y  Q  C  Y  *  *  Q  H  W  D  R  *  *  L  H  *  C  W  T  W  Y  Y  Q  Y  F  C  Q  *  Y  S  L  W  P  W  T  W  N  K  :  Y  W  K  P  W  K  E  T  R  *  E  G  C  Y  K  S  L  Y  K  K  L  Y  I  P  Q  Y  N  K  W  C  K  N  Q  D  L  Y  G  F  I  S  T  T  S  F  *  C  C  L  *  R  Y  C  L  G  G  C  *  K  S  N  S  Y  *  S  T  L  *  F  Q  E  Q  G  *   : A  I  K  S  E  T  K  R  Y  S  L  Q  E  H  K  G  D  N  K  Y  K  S  S  S  I  T  *  L  Q  *  S  S  S  M  *  R  S  *  I  G  *  Y  *  Y  S  S  I  W  Y  N  W  T  S  T  R  S  N  M  S  K  C  Q  D  S  I  Q  W  K  N  *  C  S  S  M  *  I  I  T  L  H  Y  *  S  N  H  V  H  M  K  K  C  V  *  I  S  I  *  P  C  N  F  V  Y  G  L  L  *  Y  L  F  I  F  F  F  S  M  P  G  N  R  K  K  R  R  R  *  N  L  A  L  D  A  Y  *  L  V  R  :  Y  I  V  K  V  I  F  *  W  K  I :   S  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </first_frame>
            <second_frame>  L  L  *  F  L  T  F  F  L  L  Y  F  Y  F  F  Q  F  P  I  *  A  T  T  T  M  A  I  P  K  G  L  E  I  N  N  I  V  G  L  F  L  L  L  G  I  A  I  L  S  S  K  V  A  E  C  A  P  F  G  S  R  R  G  L  M  E  T  V  F  D  V  T  K  H  G  A  R  P  D  P  T  A  D  S  T  R  :  G  F  M  M  A  W  R  A  A  C  Q  S  T  G  P  A  K  V  V  I  P  P  G  T  F  T  T  G  E  T  I  F  Q  G  P  C  T  C  P  K  P  I  I  I  E  I  Q  G  T  V  L  S  N  T  D  I  S  L  Y  S  R  A  S  W  I  S  L  E  H  V  D  G  V  V  I  T  G  G  G  T  L  N  G  Q  G  N  A  S  W  Q  Y  A  D  K  S  G  N  S  P  P  L  P  T  :  S  L  V  F  Q  T  V  K  S  S  S  I  N  G  I  N  F  V  D  S  K  G  V  H  L  K  V  T  D  S  N  D  I  T  V  S  K  I  K  I  T  A  P  A  T  S  P  N  T  D  G  I  H  I  S  E  T  I  N  I  N  V  T  D  S  N  I  G  T  G  D  D  C  I  S  V  G  H  G  T  T  N  I  F  V  N  N  I  H  C  G  P  G  H  G  I  S :   I  G  S  L  G  K  R  P  D  E  K  D  V  T  K  V  Y  I  K  N  C  T  F  H  S  T  T  N  G  A  R  I  K  T  Y  M  D  S  S  P  L  Q  V  S  D  V  V  Y  E  D  I  V  L  E  D  V  K  N  P  I  L  I  D  Q  H  Y  N  S  K  N  K  V  E  :  P  S  K  V  K  L  K  D  I  H  F  K  N  I  R  G  T  T  N  T  K  A  P  V  S  L  N  C  S  E  A  A  P  C  E  G  V  E  L  A  D  I  D  I  A  P  S  G  T  T  G  P  L  Q  G  A  T  C  Q  N  A  K  T  V  F  N  G  K  T  N  V  P  A  C  K  *  L  H  Y  I  I  N  Q  I  M  S  I  *  K  N  V  Y  K  F  Q  Y  N  H  V  I  L  F  M  V  Y  Y  N  I  Y  L  Y  F  F  F  R  C  L  E  I  E  K  K  E  E  D  K  I  *  R  L  T  H  I  S  *  L  G :   I  *  *  R  L  F  S  N  G  K   : Y  L  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </second_frame>
            <third_frame>   F  F  N  F  S  L  F  F  F  F  I  F  I  F  F  N  F  L  F  R  P  Q  P  Q  W  L  F  Q  K  D  *  K  S  I  I  L  *  D  Y  S  Y  F  W  V  *  P  F  Y  H  Q  K  L  Q  N  V  H  L  L  V  R  V  V  A  L  W  R  Q  F  S  M  L  P  S  T  E  L  D  Q  I  P  L  Q  I  A  L  G :   D  L  *  W  H  G  E  Q  H  V  N  Q  Q  A  Q  Q  K  L  L  F  H  Q  E  H  L  L  Q  E  K  L  F  F  K  A  H  V  H  V  Q  S  P  L  L  L  K  F  K  G  Q  Y  C  Q  I  Q  T  *  V  C  T  H  V  P  H  G  Y  P  S  N  T  W  T  V  S  L  L  Q  V  A  E  L  *  T  D  K  E  M  P  A  G  S  M  L  T  K  A  E  T  L  L  L  S  L  R :   L  L  Y  F  K  L  *  R  V  L  P  S  M  A  *  I  L  W  I  P  K  V  S  I  *  K  L  L  I  V  M  T  L  Q  F  Q  K  S  R  L  Q  H  Q  Q  Q  V  Q  I  L  M  E  F  I  *  V  K  Q  L  I  S  M  L  L  I  A  T  L  G  Q  V  M  I  A  L  V  L  D  M  V  L  P  I  F  L  S  I  I  F  I  V  A  L  D  M  E  *   : V  L  E  A  L  E  R  D  Q  M  R  R  M  L  Q  K  F  I  *  K  I  V  H  S  T  V  Q  Q  M  V  Q  E  S  R  L  I  W  I  H  L  H  Y  K  F  L  M  L  F  M  K  I  L  S  W  R  M  L  K  I  Q  F  L  L  I  N  T  I  I  P  R  T  R  L  S :   H  Q  K  *  N  *  K  I  F  T  S  R  T  *  G  G  Q  Q  I  Q  K  L  Q  Y  H  L  I  A  V  K  Q  L  H  V  K  E  L  N  W  L  I  L  I  *  L  H  L  V  Q  L  D  L  Y  K  E  Q  H  V  K  M  P  R  Q  Y  S  M  E  K  L  M  F  Q  H  V  N  N  Y  I  T  L  L  I  K  S  C  P  Y  E  K  M  C  I  N  F  N  I  T  M  *  F  C  L  W  F  I  I  I  F  I  Y  I  F  F  F  D  A  W  K  *  K  K  K  K  K  I  K  F  S  A  *  R  I  L  A  S  *   : V  Y  S  K  G  Y  F  L  M  E  N  :  I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0115P13.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65235" stop="65432"/>
                    <exon start="65540" stop="65848"/>
                    <exon start="65933" stop="66222"/>
                    <exon start="66361" stop="66580"/>
                    <exon start="67636" stop="67863"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1242</number_coding_nucleotides>
                  <number_encoded_amino_acids>414</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ATTTMAIPKGLEINNIVGLFLLLGIAILSSKVAECAPFGSRRGLMETVFDVTKHGARPDPTADSTRGFMMAWRAACQSTGPAKVVIPPGTFTTGETIFQGPCTCPKPIIIEIQGTVLSNTDISLYSRASWISLEHVDGVVITGGGTLNGQGNASWQYADKSGNSPPLPTSLVFQTVKSSSINGINFVDSKGVHLKVTDSNDITVSKIKITAPATSPNTDGIHISETININVTDSNIGTGDDCISVGHGTTNIFVNNIHCGPGHGISIGSLGKRPDEKDVTKVYIKNCTFHSTTNGARIKTYMDSSPLQVSDVVYEDIVLEDVKNPILIDQHYNSKNKVEPSKVKLKDIHFKNIRGTTNTKAPVSLNCSEAAPCEGVELADIDIAPSGTTGPLQGATCQNAKTVFNGKTNVPACK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="68738" e_stop="69185"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="68738" e_stop="69185" e_length="448"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68738" stop="69059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68738" stop="69028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68739" stop="69185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCACTGTATACAAAAACAGAAACACAATATATACACTTCTGTTATATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCGTTGCCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACAAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAATTATACACTTCTGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGAGAGACGCTGGCAAATTTTAGCTAATGTTTGCTATGGAGCACAATTAAATCAAACCCTAGCTATTTCATTTAATTTAGGTTATTAG</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  I  A  R  R  Y  M  F  F  S  L  Y  T  K  T  E  T  Q  Y  I  H  F  C  Y  I  K  L  E  K  I  V  F  H  C  N  C  I  I  H  N  C  I  I  R  C  P  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  I  F  A  C  V  Y  T  I  F  S  R  F  I  Q  N  R  N  R  I  I  H  F  C  V  *  S  E  R  G  E  R  E  W  R  V  A  S  E  I  F  G  R  E  T  L  A  N  F  S  *  C  L  L  W  S  T  I  K  S  N  P  S  Y  F  I  *  F  R  L  L  </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  Q  E  D  I  C  F  S  H  C  I  Q  K  Q  K  H  N  I  Y  T  S  V  I  *  S  *  R  K  L  Y  F  T  A  I  V  *  F  T  I  V  *  F  V  A  L  F  L  C  N  I  *  S  K  M  F  V  N  C  I  I  K  C  I  T  Q  R  Y  T  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  E  T  E  L  Y  T  S  V  Y  K  A  R  E  A  S  E  N  G  E  W  R  A  R  F  L  G  E  R  R  W  Q  I  L  A  N  V  C  Y  G  A  Q  L  N  Q  T  L  A  I  S  F  N  L  G  Y  * </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  V  F  L  T  V  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  A  R  E  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  S  L  P  F  F  S  A  I  F  E  V  K  C  L  *  I  V  *  L  S  V  *  H  K  D  I  H  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  Q  K  Q  N  Y  T  L  L  C  I  K  R  E  R  R  A  R  M  E  S  G  E  R  D  F  W  E  R  D  A  G  K  F  *  L  M  F  A  M  E  H  N  *  I  K  P  *  L  F  H  L  I  *  V  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0115P13.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68925" stop="69185"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKMFVNCIIKCITQRYTFLHVYIQFSLALYKTETELYTSVYKAREASENGEWRARFLGERRWQILANVCYGAQLNQTLAISFNLGY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="66881" e_stop="67339"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="66881" e_stop="67339" e_length="459"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66881" stop="67339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243215" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATTATAGATGACCAAATTTTTTCTTCGAATACGAAATTAAATTACAATACGCACAAAAAAATAGTTTAAATTTTTTTCCTTTAAACTAAGGAATGAAAGAAAAAAACATAATAAGAATAAGAAACCCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCTCTAAATAATTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTCCGTTAAATGAAGGGTATATGTGAGCCATGTTTGTGACGACAGGGGTATATGTGAGCCGTTTTTATAACGGTAAGGACATATATGAGTCACTTTTATAACGAAGGGTATATCAGCTCCAAATGACAAAATTGAGGGATATATCAGACCCTTTTCCCTTTTTTTAATATTCAGGC</gDNA_template>
            <first_frame> L  L  *  M  T  K  F  F  L  R  I  R  N  *  I  T  I  R  T  K  K  *  F  K  F  F  S  F  K  L  R  N  E  R  K  K  H  N  K  N  K  K  P  K  *  L  *  *  K  K  S  K  N  N  L  C  M  K  K  I  K  I  Y  L  E  L  *  *  K  N  H  I  Y  L  *  I  I  F  K  K  K  L  E  V  T  N  I  N  L  K  L  I  F  *  L  P  L  N  E  G  Y  M  *  A  M  F  V  T  T  G  V  Y  V  S  R  F  Y  N  G  K  D  I  Y  E  S  L  L  *  R  R  V  Y  Q  L  Q  M  T  K  L  R  D  I  S  D  P  F  P  F  F  *  Y  S  G </first_frame>
            <second_frame>  Y  Y  R  *  P  N  F  F  F  E  Y  E  I  K  L  Q  Y  A  Q  K  N  S  L  N  F  F  P  L  N  *  G  M  K  E  K  N  I  I  R  I  R  N  P  N  N  Y  N  K  R  S  Q  K  I  I  Y  V  *  K  K  L  K  Y  T  L  N  F  D  R  R  I  I  Y  I  S  K  *  F  L  K  K  N  *  K  *  Q  I  *  I  *  N  *  F  F  N  F  R  *  M  K  G  I  C  E  P  C  L  *  R  Q  G  Y  M  *  A  V  F  I  T  V  R  T  Y  M  S  H  F  Y  N  E  G  Y  I  S  S  K  *  Q  N  *  G  I  Y  Q  T  L  F  P  F  F  N  I  Q   </second_frame>
            <third_frame>   I  I  D  D  Q  I  F  S  S  N  T  K  L  N  Y  N  T  H  K  K  I  V  *  I  F  F  L  *  T  K  E  *  K  K  K  T  *  *  E  *  E  T  Q  I  I  I  I  K  E  V  K  K  *  F  M  Y  E  K  N  *  N  I  P  *  T  L  I  E  E  S  Y  I  S  L  N  N  F  *  K  K  I  R  S  N  K  Y  K  F  K  T  N  F  L  T  S  V  K  *  R  V  Y  V  S  H  V  C  D  D  R  G  I  C  E  P  F  L  *  R  *  G  H  I  *  V  T  F  I  T  K  G  I  S  A  P  N  D  K  I  E  G  Y  I  R  P  F  S  L  F  L  I  F  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLm0115P13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="66393" e_stop="66580"/>
            <exon e_start="67636" e_stop="68045"/>
            <exon e_start="68239" e_stop="68261"/>
            <exon e_start="71001" e_stop="71082"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.994" e_score="0.995"/>
          <exon-intron don_prob="0.003" acc_prob="0.000" e_score="0.956"/>
          <exon-intron don_prob="0.000" acc_prob="0.758" e_score="0.739"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="66393" e_stop="66580" e_length="188"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.994">
            <gDNA_intron_boundary i_start="66581" i_stop="67635" i_length="1055"/>
          </intron>
          <exon e_serial="2" e_score="0.956">
            <gDNA_exon_boundary e_start="67636" e_stop="68045" e_length="410"/>
          </exon>
          <intron i_serial="2" don_prob="0.003" acc_prob="0.000">
            <gDNA_intron_boundary i_start="68046" i_stop="68238" i_length="193"/>
          </intron>
          <exon e_serial="3" e_score="0.739">
            <gDNA_exon_boundary e_start="68239" e_stop="68261" e_length="23"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.758">
            <gDNA_intron_boundary i_start="68262" i_stop="71000" i_length="2739"/>
          </intron>
          <exon e_serial="4" e_score="0.667">
            <gDNA_exon_boundary e_start="71001" e_stop="71082" e_length="82"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66393" stop="66580"/>
              <exon start="67636" stop="68045"/>
              <exon start="68239" stop="68261"/>
              <exon start="71001" stop="71082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374305" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGATGTTACAAAAGTTTATATAAAAAATTGTACATTCCACAGTACAACAAATGGTGCAAGAATCAAGACTTATATGGATTCATCTCCACTACAAGTTTCTGATGTTGTTTATGAAGATATTGTCTTGGAGGATGTTAAAAATCCAATTCTTATTGATCAACACTATAATTCCAAGAACAAGGTTGAG : CCATCAAAAGTGAAACTAAAAGATATTCACTTCAAGAACATAAGGGGGACAACAAATACAAAAGCTCCAGTATCACTTAATTGCAGTGAAGCAGCTCCATGTGAAGGAGTTGAATTGGCTGATATTGATATAGCTCCATCTGGTACAACTGGACCTCTACAAGGAGCAACATGTCAAAATGCCAAGACAGTATTCAATGGAAAAACTAATGTTCCAGCATGTAAATAATTACATTACATTATTAATCAAATCATGTCCATATGAAAAAATGTGTATAAATTTCAATATAACCATGTAATTTTGTTTATGGTTTATTATAATATTTATTTATATTTTTTTTTTCGATGCCTGGAAATAGAAAAAAAAGAAGAAGATAAAATTTAGCGCTTGACGCATATTAGCTAGTTAGG : TATATAGTAAAGGTTATTTTCTA : ATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> R  M  L  Q  K  F  I  *  K  I  V  H  S  T  V  Q  Q  M  V  Q  E  S  R  L  I  W  I  H  L  H  Y  K  F  L  M  L  F  M  K  I  L  S  W  R  M  L  K  I  Q  F  L  L  I  N  T  I  I  P  R  T  R  L  S :   H  Q  K  *  N  *  K  I  F  T  S  R  T  *  G  G  Q  Q  I  Q  K  L  Q  Y  H  L  I  A  V  K  Q  L  H  V  K  E  L  N  W  L  I  L  I  *  L  H  L  V  Q  L  D  L  Y  K  E  Q  H  V  K  M  P  R  Q  Y  S  M  E  K  L  M  F  Q  H  V  N  N  Y  I  T  L  L  I  K  S  C  P  Y  E  K  M  C  I  N  F  N  I  T  M  *  F  C  L  W  F  I  I  I  F  I  Y  I  F  F  F  D  A  W  K  *  K  K  K  K  K  I  K  F  S  A  *  R  I  L  A  S  *   : V  Y  S  K  G  Y  F  L  :  I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </first_frame>
            <second_frame>  G  C  Y  K  S  L  Y  K  K  L  Y  I  P  Q  Y  N  K  W  C  K  N  Q  D  L  Y  G  F  I  S  T  T  S  F  *  C  C  L  *  R  Y  C  L  G  G  C  *  K  S  N  S  Y  *  S  T  L  *  F  Q  E  Q  G  *   : A  I  K  S  E  T  K  R  Y  S  L  Q  E  H  K  G  D  N  K  Y  K  S  S  S  I  T  *  L  Q  *  S  S  S  M  *  R  S  *  I  G  *  Y  *  Y  S  S  I  W  Y  N  W  T  S  T  R  S  N  M  S  K  C  Q  D  S  I  Q  W  K  N  *  C  S  S  M  *  I  I  T  L  H  Y  *  S  N  H  V  H  M  K  K  C  V  *  I  S  I  *  P  C  N  F  V  Y  G  L  L  *  Y  L  F  I  F  F  F  S  M  P  G  N  R  K  K  R  R  R  *  N  L  A  L  D  A  Y  *  L  V  R  :  Y  I  V  K  V  I  F  * :   S  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </second_frame>
            <third_frame>   D  V  T  K  V  Y  I  K  N  C  T  F  H  S  T  T  N  G  A  R  I  K  T  Y  M  D  S  S  P  L  Q  V  S  D  V  V  Y  E  D  I  V  L  E  D  V  K  N  P  I  L  I  D  Q  H  Y  N  S  K  N  K  V  E  :  P  S  K  V  K  L  K  D  I  H  F  K  N  I  R  G  T  T  N  T  K  A  P  V  S  L  N  C  S  E  A  A  P  C  E  G  V  E  L  A  D  I  D  I  A  P  S  G  T  T  G  P  L  Q  G  A  T  C  Q  N  A  K  T  V  F  N  G  K  T  N  V  P  A  C  K  *  L  H  Y  I  I  N  Q  I  M  S  I  *  K  N  V  Y  K  F  Q  Y  N  H  V  I  L  F  M  V  Y  Y  N  I  Y  L  Y  F  F  F  R  C  L  E  I  E  K  K  E  E  D  K  I  *  R  L  T  H  I  S  *  L  G :   I  *  *  R  L  F  S   : N  L  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0115P13.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66395" stop="66580"/>
                    <exon start="67636" stop="67863"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>411</number_coding_nucleotides>
                  <number_encoded_amino_acids>137</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DVTKVYIKNCTFHSTTNGARIKTYMDSSPLQVSDVVYEDIVLEDVKNPILIDQHYNSKNKVEPSKVKLKDIHFKNIRGTTNTKAPVSLNCSEAAPCEGVELADIDIAPSGTTGPLQGATCQNAKTVFNGKTNVPACK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="73438" PGL_stop="72325"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73438" e_stop="73222"/>
            <exon e_start="72902" e_stop="72325"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73438" e_stop="73222" e_length="217"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="73221" i_stop="72903" i_length="319"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="72902" e_stop="72325" e_length="578"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73438" stop="73222"/>
              <exon start="72902" stop="72660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73427" stop="73222"/>
              <exon start="72902" stop="72684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73426" stop="73222"/>
              <exon start="72902" stop="72474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73426" stop="73222"/>
              <exon start="72902" stop="72719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73421" stop="73222"/>
              <exon start="72902" stop="72795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73419" stop="73222"/>
              <exon start="72902" stop="72477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73419" stop="73222"/>
              <exon start="72902" stop="72684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73419" stop="73228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73418" stop="73222"/>
              <exon start="72902" stop="72689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73417" stop="73222"/>
              <exon start="72902" stop="72525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73417" stop="73222"/>
              <exon start="72902" stop="72534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73417" stop="73222"/>
              <exon start="72902" stop="72658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73417" stop="73222"/>
              <exon start="72902" stop="72695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73416" stop="73222"/>
              <exon start="72902" stop="72577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73414" stop="73222"/>
              <exon start="72902" stop="72377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73413" stop="73222"/>
              <exon start="72902" stop="72538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73412" stop="73222"/>
              <exon start="72902" stop="72682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73408" stop="73222"/>
              <exon start="72902" stop="72562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73407" stop="73222"/>
              <exon start="72902" stop="72484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73407" stop="73222"/>
              <exon start="72902" stop="72486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73407" stop="73222"/>
              <exon start="72902" stop="72781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73406" stop="73222"/>
              <exon start="72902" stop="72485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73406" stop="73222"/>
              <exon start="72902" stop="72526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73406" stop="73222"/>
              <exon start="72902" stop="72555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73406" stop="73222"/>
              <exon start="72902" stop="72644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73394" stop="73222"/>
              <exon start="72902" stop="72689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73390" stop="73222"/>
              <exon start="72902" stop="72682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73384" stop="73222"/>
              <exon start="72902" stop="72686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73381" stop="73222"/>
              <exon start="72902" stop="72689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73373" stop="73222"/>
              <exon start="72902" stop="72538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73373" stop="73222"/>
              <exon start="72902" stop="72684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73371" stop="73222"/>
              <exon start="72902" stop="72682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73367" stop="73222"/>
              <exon start="72902" stop="72586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73350" stop="73222"/>
              <exon start="72902" stop="72684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73350" stop="73222"/>
              <exon start="72902" stop="72686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73337" stop="73222"/>
              <exon start="72902" stop="72684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73336" stop="73222"/>
              <exon start="72902" stop="72823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73321" stop="73222"/>
              <exon start="72902" stop="72325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73299" stop="73222"/>
              <exon start="72902" stop="72358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73299" stop="73222"/>
              <exon start="72902" stop="72421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73281" stop="73222"/>
              <exon start="72902" stop="72531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73280" stop="73222"/>
              <exon start="72902" stop="72538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73278" stop="73222"/>
              <exon start="72902" stop="72530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73262" stop="73222"/>
              <exon start="72902" stop="72684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72902" stop="72446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72821" stop="72663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72754" stop="72380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72733" stop="72372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72733" stop="72436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72733" stop="72465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72697" stop="72410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549638" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATATCTAACATTTTCCTTCAGATTTTAAAAAAAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAG : GCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGAAAATGTTGAATTCAGTTGAATACGTTGGACATGTATTACATATTAGATTTTCACTTTTTGATTAATTCTAAAAAAAAACAATTAGAAGATCAAGAATTACATTTTGATGAGTAGATGAATTCAGGATTGAAATATTGGAGTTCAATAGTGAAAATATTGTAATTTTTCACATATTATGTTTGTTTTCTGCATAAGAAAAATGTTTGAATTCAACTGAATACGTTGAACATGC</gDNA_template>
            <first_frame> I  S  N  I  F  L  Q  I  L  K  K  I  S  N  L  L  L  R  K  *  L  K  F  R  F  L  P  L  Q  L  Q  F  N  F  D  *  L  I  F  F  Y  S  Q  Q  Y  Q  L  Q  W  L  V  I  Y  P  T  A  K  I  S  L  L  L  L  *  T  L  F  L  *  L  S  R   : G  V  D  T  R  P  R  Q  H  R  V  V  F  L  V  V  *  E  V  V  G  V  L  E  A  M  *  W  N  Q  T  R  L  H  G  Y  Q  I  L  L  L  V  I  T  D  Q  K  L  M  L  R  K  L  M  L  L  N  L  E  T  C  C  *  S  T  N  L  D  K  I  E  K  K  K  R  T  N  *  R  I  K  N  H  V  S  M  S  R  D  E  L  G  F  G  Y  *  S  S  I  V  E  I  L  *  F  L  T  Y  Y  V  C  F  S  H  K  E  N  V  E  F  S  *  I  R  W  T  C  I  T  Y  *  I  F  T  F  *  L  I  L  K  K  N  N  *  K  I  K  N  Y  I  L  M  S  R  *  I  Q  D  *  N  I  G  V  Q  *  *  K  Y  C  N  F  S  H  I  M  F  V  F  C  I  R  K  M  F  E  F  N  *  I  R  *  T  C </first_frame>
            <second_frame>  Y  L  T  F  S  F  R  F  *  K  K  F  Q  I  C  C  C  G  S  N  *  N  F  D  F  F  R  C  N  F  N  S  I  L  I  D  *  S  S  S  I  L  S  N  I  N  Y  N  G  S  L  F  I  Q  L  Q  K  Y  L  C  F  C  C  R  L  C  F  C  S  Y  P  E  :  A  W  I  R  G  H  G  S  T  G  W  C  F  W  *  C  K  R  *  W  E  C  *  K  Q  C  D  G  I  K  Q  D  F  M  G  T  R  S  C  Y  W  L  L  Q  T  R  N  S  C  *  G  N  *  C  C  *  T  *  K  H  V  V  E  V  Q  T  *  T  K  L  K  K  K  K  E  Q  I  R  G  S  R  I  T  F  R  *  V  E  T  N  *  D  L  D  I  E  V  Q  *  *  K  Y  C  N  F  S  H  I  M  F  V  F  R  I  R  K  M  L  N  S  V  E  Y  V  G  H  V  L  H  I  R  F  S  L  F  D  *  F  *  K  K  T  I  R  R  S  R  I  T  F  *  *  V  D  E  F  R  I  E  I  L  E  F  N  S  E  N  I  V  I  F  H  I  L  C  L  F  S  A  *  E  K  C  L  N  S  T  E  Y  V  E  H   </second_frame>
            <third_frame>   I  *  H  F  P  S  D  F  K  K  N  F  K  F  V  A  A  E  V  I  K  I  S  I  S  S  A  A  T  S  I  Q  F  *  L  I  D  L  L  L  F  S  A  I  S  I  T  M  A  R  Y  L  S  N  C  K  N  I  S  A  F  V  V  D  S  V  S  V  A  I  Q  R :   R  G  Y  A  A  T  A  A  Q  G  G  V  S  G  S  V  R  G  S  G  S  V  R  S  N  V  M  E  S  N  K  T  S  W  V  P  D  P  V  T  G  Y  Y  R  P  E  T  H  A  K  E  I  D  A  A  E  L  R  N  M  L  L  K  Y  K  P  R  Q  N  *  K  K  K  K  N  K  L  E  D  Q  E  S  R  F  D  E  *  R  R  I  R  I  W  I  L  K  F  N  S  R  N  I  V  I  S  H  I  L  C  L  F  F  A  *  G  K  C  *  I  Q  L  N  T  L  D  M  Y  Y  I  L  D  F  H  F  L  I  N  S  K  K  K  Q  L  E  D  Q  E  L  H  F  D  E  *  M  N  S  G  L  K  Y  W  S  S  I  V  K  I  L  *  F  F  T  Y  Y  V  C  F  L  H  K  K  N  V  *  I  Q  L  N  T  L  N  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0115P13.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73334" stop="73222"/>
                    <exon start="72902" stop="72692"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIDLLLFSAISITMARYLSNCKNISAFVVDSVSVAIQRRGYAATAAQGGVSGSVRGSGSVRSNVMESNKTSWVPDPVTGYYRPETHAKEIDAAELRNMLLKYKPRQN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="73420" e_stop="72325"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73420" e_stop="72325" e_length="1096"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73420" stop="72731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73419" stop="72921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73419" stop="73228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73417" stop="72691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73409" stop="72683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73408" stop="72733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73408" stop="72738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73408" stop="72813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73408" stop="72907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73407" stop="73018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73407" stop="73056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73240" stop="72864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73239" stop="72839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73117" stop="72514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73117" stop="72557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72979" stop="72399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72911" stop="72325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72902" stop="72446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72821" stop="72663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72754" stop="72380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72733" stop="72372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72733" stop="72436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72733" stop="72465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72697" stop="72410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549638" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGATTTTAAAAAAAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGAAAATGTTGAATTCAGTTGAATACGTTGGACATGTATTACATATTAGATTTTCACTTTTTGATTAATTCTAAAAAAAAACAATTAGAAGATCAAGAATTACATTTTGATGAGTAGATGAATTCAGGATTGAAATATTGGAGTTCAATAGTGAAAATATTGTAATTTTTCACATATTATGTTTGTTTTCTGCATAAGAAAAATGTTTGAATTCAACTGAATACGTTGAACATGC</gDNA_template>
            <first_frame> Q  I  L  K  K  I  S  N  L  L  L  R  K  *  L  K  F  R  F  L  P  L  Q  L  Q  F  N  F  D  *  L  I  F  F  Y  S  Q  Q  Y  Q  L  Q  W  L  V  I  Y  P  T  A  K  I  S  L  L  L  L  *  T  L  F  L  *  L  S  R  G  K  Q  K  Y  H  S  F  F  P  N  F  R  V  *  K  R  V  Y  L  S  *  N  K  M  N  N  R  N  L  C  S  C  K  S  F  N  L  K  *  N  *  Y  F  K  V  K  L  L  A  S  K  E  I  K  N  R  V  V  *  L  L  V  L  F  F  L  F  L  F  K  I  C  *  F  Y  L  L  L  Y  T  F  G  I  I  Y  I  I  V  V  S  V  Y  V  I  L  F  K  F  *  I  C  L  *  *  Y  R  R  G  Y  A  A  T  A  A  Q  G  G  V  S  G  S  V  R  G  S  G  S  V  R  S  N  V  M  E  S  N  K  T  S  W  V  P  D  P  V  T  G  Y  Y  R  P  E  T  H  A  K  E  I  D  A  A  E  L  R  N  M  L  L  K  Y  K  P  R  Q  N  *  K  K  K  K  N  K  L  E  D  Q  E  S  R  F  D  E  *  R  R  I  R  I  W  I  L  K  F  N  S  R  N  I  V  I  S  H  I  L  C  L  F  F  A  *  G  K  C  *  I  Q  L  N  T  L  D  M  Y  Y  I  L  D  F  H  F  L  I  N  S  K  K  K  Q  L  E  D  Q  E  L  H  F  D  E  *  M  N  S  G  L  K  Y  W  S  S  I  V  K  I  L  *  F  F  T  Y  Y  V  C  F  L  H  K  K  N  V  *  I  Q  L  N  T  L  N  M  </first_frame>
            <second_frame>  R  F  *  K  K  F  Q  I  C  C  C  G  S  N  *  N  F  D  F  F  R  C  N  F  N  S  I  L  I  D  *  S  S  S  I  L  S  N  I  N  Y  N  G  S  L  F  I  Q  L  Q  K  Y  L  C  F  C  C  R  L  C  F  C  S  Y  P  E  V  N  K  N  I  I  L  F  F  P  I  S  E  F  K  N  G  F  I  *  V  K  I  K  *  T  I  E  I  C  V  A  V  N  L  L  I  *  N  K  I  N  I  L  K  L  N  C  *  R  V  K  K  *  K  T  E  L  Y  D  C  W  F  C  F  S  F  F  F  S  K  Y  V  N  F  T  F  Y  Y  I  L  L  G  *  F  I  S  L  S  L  V  F  T  L  F  Y  L  N  F  E  F  V  S  N  N  I  G  V  D  T  R  P  R  Q  H  R  V  V  F  L  V  V  *  E  V  V  G  V  L  E  A  M  *  W  N  Q  T  R  L  H  G  Y  Q  I  L  L  L  V  I  T  D  Q  K  L  M  L  R  K  L  M  L  L  N  L  E  T  C  C  *  S  T  N  L  D  K  I  E  K  K  K  R  T  N  *  R  I  K  N  H  V  S  M  S  R  D  E  L  G  F  G  Y  *  S  S  I  V  E  I  L  *  F  L  T  Y  Y  V  C  F  S  H  K  E  N  V  E  F  S  *  I  R  W  T  C  I  T  Y  *  I  F  T  F  *  L  I  L  K  K  N  N  *  K  I  K  N  Y  I  L  M  S  R  *  I  Q  D  *  N  I  G  V  Q  *  *  K  Y  C  N  F  S  H  I  M  F  V  F  C  I  R  K  M  F  E  F  N  *  I  R  *  T  C </second_frame>
            <third_frame>   D  F  K  K  N  F  K  F  V  A  A  E  V  I  K  I  S  I  S  S  A  A  T  S  I  Q  F  *  L  I  D  L  L  L  F  S  A  I  S  I  T  M  A  R  Y  L  S  N  C  K  N  I  S  A  F  V  V  D  S  V  S  V  A  I  Q  R  *  T  K  I  S  F  F  F  S  Q  F  P  S  L  K  T  G  L  S  E  L  K  *  N  E  Q  *  K  F  V  *  L  *  I  F  *  F  K  I  K  L  I  F  *  S  *  I  V  S  E  *  R  N  K  K  Q  S  C  M  I  V  G  S  V  F  P  F  S  F  Q  N  M  L  I  L  P  F  I  I  Y  F  W  D  N  L  Y  H  C  R  *  C  L  R  Y  F  I  *  I  L  N  L  S  L  I  I  *  A  W  I  R  G  H  G  S  T  G  W  C  F  W  *  C  K  R  *  W  E  C  *  K  Q  C  D  G  I  K  Q  D  F  M  G  T  R  S  C  Y  W  L  L  Q  T  R  N  S  C  *  G  N  *  C  C  *  T  *  K  H  V  V  E  V  Q  T  *  T  K  L  K  K  K  K  E  Q  I  R  G  S  R  I  T  F  R  *  V  E  T  N  *  D  L  D  I  E  V  Q  *  *  K  Y  C  N  F  S  H  I  M  F  V  F  R  I  R  K  M  L  N  S  V  E  Y  V  G  H  V  L  H  I  R  F  S  L  F  D  *  F  *  K  K  T  I  R  R  S  R  I  T  F  *  *  V  D  E  F  R  I  E  I  L  E  F  N  S  E  N  I  V  I  F  H  I  L  C  L  F  S  A  *  E  K  C  L  N  S  T  E  Y  V  E  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0115P13.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72907" stop="72692"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YRRGYAATAAQGGVSGSVRGSGSVRSNVMESNKTSWVPDPVTGYYRPETHAKEIDAAELRNMLLKYKPRQN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="77541" PGL_stop="76419"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77541" e_stop="77470"/>
            <exon e_start="77088" e_stop="76419"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="0.972"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="77541" e_stop="77470" e_length="72"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="77469" i_stop="77089" i_length="381"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="77088" e_stop="76419" e_length="670"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77541" stop="77470"/>
              <exon start="77088" stop="76419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713540" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTCGTGGCCAGCAAAATTGCTGCAGAACGACAACTTACAGCTGACTCTGCCATTGCTAACATTACCTGCAG : CAATTCGGTGAACATCTATATAGGCATTGGCGTACCATGGCTAATCGATACATTGTACAACTACATTGCATACAACGAGCCATTGCGAATAGAAAATGCAGAAGGACTAAGTTTCTCTCTGCTTGTTTTCTTCTCTACTTCTGTAGCCTGCATCGGTGTTTTGGTGTTTAGACGACTCACTATCGGTGCTGAGCTTGGCGGGCCAAGAGTTTGGGCATGGGTAACTTGCATATTCTTCATGTTGTTATGGCTTATATTTGTTGTGCTATCTTCTCTCAGAGTTTCTGGTATTATATAACAATCTTAGTCCAAATCATTCCTAGAAAGGGGTAATTTTTTTACTCATCGTATCTATCGATGGATATTGGTCTGAGATGGGTTTAAACAACAATCTATGGTCGATTCTGATTTGCTTGGGATTGATAGTAGTTGTTATTGTTGTATTATATTGATTTATGGATATTGGACTGAGATGGGCTTAAATGGAGCGATATCAACATTGAAGATTTATATGGTCGATTTCTATAGTAGTTATTGTTGTATTGTAATGATCGATGTAATGTAGCCTTACACTCTTGCAAGTTGTATGCATGCATGCATGCACTCAATTATGAATTTTGGTAAAGTGTAAATTTTTTAAATTTATTGTATTGATCGACGTATATTGGGT</gDNA_template>
            <first_frame> S  R  G  Q  Q  N  C  C  R  T  T  T  Y  S  *  L  C  H  C  *  H  Y  L  Q  :  Q  F  G  E  H  L  Y  R  H  W  R  T  M  A  N  R  Y  I  V  Q  L  H  C  I  Q  R  A  I  A  N  R  K  C  R  R  T  K  F  L  S  A  C  F  L  L  Y  F  C  S  L  H  R  C  F  G  V  *  T  T  H  Y  R  C  *  A  W  R  A  K  S  L  G  M  G  N  L  H  I  L  H  V  V  M  A  Y  I  C  C  A  I  F  S  Q  S  F  W  Y  Y  I  T  I  L  V  Q  I  I  P  R  K  G  *  F  F  Y  S  S  Y  L  S  M  D  I  G  L  R  W  V  *  T  T  I  Y  G  R  F  *  F  A  W  D  *  *  *  L  L  L  L  Y  Y  I  D  L  W  I  L  D  *  D  G  L  K  W  S  D  I  N  I  E  D  L  Y  G  R  F  L  *  *  L  L  L  Y  C  N  D  R  C  N  V  A  L  H  S  C  K  L  Y  A  C  M  H  A  L  N  Y  E  F  W  *  S  V  N  F  L  N  L  L  Y  *  S  T  Y  I  G  </first_frame>
            <second_frame>  L  V  A  S  K  I  A  A  E  R  Q  L  T  A  D  S  A  I  A  N  I  T  C  S :   N  S  V  N  I  Y  I  G  I  G  V  P  W  L  I  D  T  L  Y  N  Y  I  A  Y  N  E  P  L  R  I  E  N  A  E  G  L  S  F  S  L  L  V  F  F  S  T  S  V  A  C  I  G  V  L  V  F  R  R  L  T  I  G  A  E  L  G  G  P  R  V  W  A  W  V  T  C  I  F  F  M  L  L  W  L  I  F  V  V  L  S  S  L  R  V  S  G  I  I  *  Q  S  *  S  K  S  F  L  E  R  G  N  F  F  T  H  R  I  Y  R  W  I  L  V  *  D  G  F  K  Q  Q  S  M  V  D  S  D  L  L  G  I  D  S  S  C  Y  C  C  I  I  L  I  Y  G  Y  W  T  E  M  G  L  N  G  A  I  S  T  L  K  I  Y  M  V  D  F  Y  S  S  Y  C  C  I  V  M  I  D  V  M  *  P  Y  T  L  A  S  C  M  H  A  C  M  H  S  I  M  N  F  G  K  V  *  I  F  *  I  Y  C  I  D  R  R  I  L  G </second_frame>
            <third_frame>   S  W  P  A  K  L  L  Q  N  D  N  L  Q  L  T  L  P  L  L  T  L  P  A   : A  I  R  *  T  S  I  *  A  L  A  Y  H  G  *  S  I  H  C  T  T  T  L  H  T  T  S  H  C  E  *  K  M  Q  K  D  *  V  S  L  C  L  F  S  S  L  L  L  *  P  A  S  V  F  W  C  L  D  D  S  L  S  V  L  S  L  A  G  Q  E  F  G  H  G  *  L  A  Y  S  S  C  C  Y  G  L  Y  L  L  C  Y  L  L  S  E  F  L  V  L  Y  N  N  L  S  P  N  H  S  *  K  G  V  I  F  L  L  I  V  S  I  D  G  Y  W  S  E  M  G  L  N  N  N  L  W  S  I  L  I  C  L  G  L  I  V  V  V  I  V  V  L  Y  *  F  M  D  I  G  L  R  W  A  *  M  E  R  Y  Q  H  *  R  F  I  W  S  I  S  I  V  V  I  V  V  L  *  *  S  M  *  C  S  L  T  L  L  Q  V  V  C  M  H  A  C  T  Q  L  *  I  L  V  K  C  K  F  F  K  F  I  V  L  I  D  V  Y  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0115P13.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77540" stop="77470"/>
                    <exon start="77088" stop="76791"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVASKIAAERQLTADSAIANITCSNSVNIYIGIGVPWLIDTLYNYIAYNEPLRIENAEGLSFSLLVFFSTSVACIGVLVFRRLTIGAELGGPRVWAWVTCIFFMLLWLIFVVLSSLRVSGII*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="82020" PGL_stop="77754"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82020" e_stop="81916"/>
            <exon e_start="80749" e_stop="80631"/>
            <exon e_start="80164" e_stop="80004"/>
            <exon e_start="78877" e_stop="78750"/>
            <exon e_start="77909" e_stop="77754"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.850" acc_prob="0.897" e_score="1.000"/>
          <exon-intron don_prob="0.876" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.052" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.971" e_score="1.000"/>
          <exon-only e_score="0.897"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="82020" e_stop="81916" e_length="105"/>
          </exon>
          <intron i_serial="1" don_prob="0.850" acc_prob="0.897">
            <gDNA_intron_boundary i_start="81915" i_stop="80750" i_length="1166"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80749" e_stop="80631" e_length="119"/>
          </exon>
          <intron i_serial="2" don_prob="0.876" acc_prob="0.942">
            <gDNA_intron_boundary i_start="80630" i_stop="80165" i_length="466"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80164" e_stop="80004" e_length="161"/>
          </exon>
          <intron i_serial="3" don_prob="0.052" acc_prob="0.998">
            <gDNA_intron_boundary i_start="80003" i_stop="78878" i_length="1126"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="78877" e_stop="78750" e_length="128"/>
          </exon>
          <intron i_serial="4" don_prob="0.980" acc_prob="0.971">
            <gDNA_intron_boundary i_start="78749" i_stop="77910" i_length="840"/>
          </intron>
          <exon e_serial="5" e_score="0.897">
            <gDNA_exon_boundary e_start="77909" e_stop="77754" e_length="156"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82020" stop="81916"/>
              <exon start="80749" stop="80631"/>
              <exon start="80164" stop="80004"/>
              <exon start="78877" stop="78750"/>
              <exon start="77909" stop="77848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81959" stop="81916"/>
              <exon start="80749" stop="80631"/>
              <exon start="80164" stop="80004"/>
              <exon start="78877" stop="78750"/>
              <exon start="77909" stop="77754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483970" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTCCTAAAGCTGGAGAATTGAAGAAGATATCAGATATTGGAGTCTGGCTTGTTGAGCTCTTTTGGTCCTTTTGGGCCTACATCTGGCTGTATATAATTTTAGAG : GTGTGGACTCCAAATGTTGTAACTTTGTGGGAGTCTATCTTAACAGTGTTGCAATTTGGGCTATTGCTGATACATGCCTATGCACAGGACAAACGTTGGCCCTATTTGTCCCTTCCTTT : AGAAAGAGCTGAGAGGCCAGAGGAGTGGGTGCCTGCTGAGGTTGTTAAATACAGGCCTCTTGACAAGGTTCATGAGCCACACTCGGAAGTATCTCAAGTTGGTGAAGAAGAAAATACCGGAATTGTTGATATATTCTCCATTCATTCAGGAGAGGGGACAG : GTCACTTTTATCAAAACTTAGCAGGAGAAGATGTCACTGAATCGTCCACGCCGAATAATTGCTATATCATTCCTGAAGAATCTGATATCCTCTCAATTTGGAAGCATCAATTTGTGGATGCTCTCATG : TTGGAGAGTACAGAATCCAGAAAATTGAATAATACATACCTACGTGTAGCAAGAATTTTCTGGCAGTTGCTTCTTCTACCGTGGAAGCTTCTTTTTGCGTTTGTGCCACCGTATCAGATTGCCCATGGGTGGATTGCTTTCATATGTTCTTTGATA</gDNA_template>
            <first_frame> V  P  K  A  G  E  L  K  K  I  S  D  I  G  V  W  L  V  E  L  F  W  S  F  W  A  Y  I  W  L  Y  I  I  L  E  :  V  W  T  P  N  V  V  T  L  W  E  S  I  L  T  V  L  Q  F  G  L  L  L  I  H  A  Y  A  Q  D  K  R  W  P  Y  L  S  L  P  L :   E  R  A  E  R  P  E  E  W  V  P  A  E  V  V  K  Y  R  P  L  D  K  V  H  E  P  H  S  E  V  S  Q  V  G  E  E  E  N  T  G  I  V  D  I  F  S  I  H  S  G  E  G  T   : G  H  F  Y  Q  N  L  A  G  E  D  V  T  E  S  S  T  P  N  N  C  Y  I  I  P  E  E  S  D  I  L  S  I  W  K  H  Q  F  V  D  A  L  M  :  L  E  S  T  E  S  R  K  L  N  N  T  Y  L  R  V  A  R  I  F  W  Q  L  L  L  L  P  W  K  L  L  F  A  F  V  P  P  Y  Q  I  A  H  G  W  I  A  F  I  C  S  L  I </first_frame>
            <second_frame>  F  L  K  L  E  N  *  R  R  Y  Q  I  L  E  S  G  L  L  S  S  F  G  P  F  G  P  T  S  G  C  I  *  F  *  R :   C  G  L  Q  M  L  *  L  C  G  S  L  S  *  Q  C  C  N  L  G  Y  C  *  Y  M  P  M  H  R  T  N  V  G  P  I  C  P  F  L   : *  K  E  L  R  G  Q  R  S  G  C  L  L  R  L  L  N  T  G  L  L  T  R  F  M  S  H  T  R  K  Y  L  K  L  V  K  K  K  I  P  E  L  L  I  Y  S  P  F  I  Q  E  R  G  Q  :  V  T  F  I  K  T  *  Q  E  K  M  S  L  N  R  P  R  R  I  I  A  I  S  F  L  K  N  L  I  S  S  Q  F  G  S  I  N  L  W  M  L  S  C :   W  R  V  Q  N  P  E  N  *  I  I  H  T  Y  V  *  Q  E  F  S  G  S  C  F  F  Y  R  G  S  F  F  L  R  L  C  H  R  I  R  L  P  M  G  G  L  L  S  Y  V  L  *   </second_frame>
            <third_frame>   S  *  S  W  R  I  E  E  D  I  R  Y  W  S  L  A  C  *  A  L  L  V  L  L  G  L  H  L  A  V  Y  N  F  R   : G  V  D  S  K  C  C  N  F  V  G  V  Y  L  N  S  V  A  I  W  A  I  A  D  T  C  L  C  T  G  Q  T  L  A  L  F  V  P  S  F  :  R  K  S  *  E  A  R  G  V  G  A  C  *  G  C  *  I  Q  A  S  *  Q  G  S  *  A  T  L  G  S  I  S  S  W  *  R  R  K  Y  R  N  C  *  Y  I  L  H  S  F  R  R  G  D  R :   S  L  L  S  K  L  S  R  R  R  C  H  *  I  V  H  A  E  *  L  L  Y  H  S  *  R  I  *  Y  P  L  N  L  E  A  S  I  C  G  C  S  H   : V  G  E  Y  R  I  Q  K  I  E  *  Y  I  P  T  C  S  K  N  F  L  A  V  A  S  S  T  V  E  A  S  F  C  V  C  A  T  V  S  D  C  P  W  V  D  C  F  H  M  F  F  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0115P13.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82020" stop="81916"/>
                    <exon start="80749" stop="80631"/>
                    <exon start="80164" stop="80004"/>
                    <exon start="78877" stop="78750"/>
                    <exon start="77909" stop="77754"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>669</number_coding_nucleotides>
                  <number_encoded_amino_acids>223</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VPKAGELKKISDIGVWLVELFWSFWAYIWLYIILEVWTPNVVTLWESILTVLQFGLLLIHAYAQDKRWPYLSLPLERAERPEEWVPAEVVKYRPLDKVHEPHSEVSQVGEEENTGIVDIFSIHSGEGTGHFYQNLAGEDVTESSTPNNCYIIPEESDILSIWKHQFVDALMLESTESRKLNNTYLRVARIFWQLLLLPWKLLFAFVPPYQIAHGWIAFICSLI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="86680" PGL_stop="82022"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86680" e_stop="86476"/>
            <exon e_start="83649" e_stop="83189"/>
            <exon e_start="82091" e_stop="82022"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.296" acc_prob="0.977" e_score="0.951"/>
          <exon-intron don_prob="0.838" acc_prob="0.969" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="86680" e_stop="86476" e_length="205"/>
          </exon>
          <intron i_serial="1" don_prob="0.296" acc_prob="0.977">
            <gDNA_intron_boundary i_start="86475" i_stop="83650" i_length="2826"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="83649" e_stop="83189" e_length="461"/>
          </exon>
          <intron i_serial="2" don_prob="0.838" acc_prob="0.969">
            <gDNA_intron_boundary i_start="83188" i_stop="82092" i_length="1097"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="82091" e_stop="82022" e_length="70"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86680" stop="86476"/>
              <exon start="83649" stop="83369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86659" stop="86476"/>
              <exon start="83649" stop="83389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86636" stop="86476"/>
              <exon start="83649" stop="83192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86629" stop="86476"/>
              <exon start="83649" stop="83189"/>
              <exon start="82091" stop="82022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708985" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAATCCCTATTCGATCTCAATTACAAGCAATAGTCCGGTGGTGCTCACTCCATGCACGTCTTCTTCTTGTATATACTCACCACATTTCTGTAAACTACTATCTCACAAATCAGTTCAAGACCCCATTTTTATCCCCTTTTTTTTCAATCACTAAACGGTACAATATGGAGCAAAATGGATATTGATAGTTGTATATGCCTATATT : GTCCGCATCCGTCCGAAAGAATAATCTTTCTGGGGCTTGAACTGCGAAGAGAAAAATATTTATCAAGATGACCTCGCTTGGAAACTATACCACTCACAGCACCAATGGACATTCAAATATCCTTAGACATGAAAAATGTGATGCTTATTTACTTTTCCATCTAGAAACTGCTCTTGGTGGAGGCTTTCGAACTTTCTTGTATTTTTTGGGTCTTGCCTATTGCTTTATTGGATTGTCAGCTATAACTGCTCGGTTTTTCCGGTCCATGGAGAGTGTTGTCAAGCATAGTCGGACTGTAGAGACGATAGATCCTCTCACAAACACAAAAGCTGTCAAAAATGAAAAGGTGTGGAATTACACAATTGCAGACATCACTCTACTGGCATTTGGGACTAGTTTTCCACAGATCTCGCTAGCTACAATTGATGCAATACGAAATATTGGAAAATTATATGCTGGAG : GTTTAGGTCCGGGAACACTCGTTGGATCTGCTGCTTTCGATCTATTTCCAATACATGCTGTTTGCGTGGT</gDNA_template>
            <first_frame> Q  S  L  F  D  L  N  Y  K  Q  *  S  G  G  A  H  S  M  H  V  F  F  L  Y  I  L  T  T  F  L  *  T  T  I  S  Q  I  S  S  R  P  H  F  Y  P  L  F  F  Q  S  L  N  G  T  I  W  S  K  M  D  I  D  S  C  I  C  L  Y   : C  P  H  P  S  E  R  I  I  F  L  G  L  E  L  R  R  E  K  Y  L  S  R  *  P  R  L  E  T  I  P  L  T  A  P  M  D  I  Q  I  S  L  D  M  K  N  V  M  L  I  Y  F  S  I  *  K  L  L  L  V  E  A  F  E  L  S  C  I  F  W  V  L  P  I  A  L  L  D  C  Q  L  *  L  L  G  F  S  G  P  W  R  V  L  S  S  I  V  G  L  *  R  R  *  I  L  S  Q  T  Q  K  L  S  K  M  K  R  C  G  I  T  Q  L  Q  T  S  L  Y  W  H  L  G  L  V  F  H  R  S  R  *  L  Q  L  M  Q  Y  E  I  L  E  N  Y  M  L  E  :  V  *  V  R  E  H  S  L  D  L  L  L  S  I  Y  F  Q  Y  M  L  F  A  W  </first_frame>
            <second_frame>  N  P  Y  S  I  S  I  T  S  N  S  P  V  V  L  T  P  C  T  S  S  S  C  I  Y  S  P  H  F  C  K  L  L  S  H  K  S  V  Q  D  P  I  F  I  P  F  F  F  N  H  *  T  V  Q  Y  G  A  K  W  I  L  I  V  V  Y  A  Y  I  :  V  R  I  R  P  K  E  *  S  F  W  G  L  N  C  E  E  K  N  I  Y  Q  D  D  L  A  W  K  L  Y  H  S  Q  H  Q  W  T  F  K  Y  P  *  T  *  K  M  *  C  L  F  T  F  P  S  R  N  C  S  W  W  R  L  S  N  F  L  V  F  F  G  S  C  L  L  L  Y  W  I  V  S  Y  N  C  S  V  F  P  V  H  G  E  C  C  Q  A  *  S  D  C  R  D  D  R  S  S  H  K  H  K  S  C  Q  K  *  K  G  V  E  L  H  N  C  R  H  H  S  T  G  I  W  D  *  F  S  T  D  L  A  S  Y  N  *  C  N  T  K  Y  W  K  I  I  C  W  R :   F  R  S  G  N  T  R  W  I  C  C  F  R  S  I  S  N  T  C  C  L  R  G </second_frame>
            <third_frame>   I  P  I  R  S  Q  L  Q  A  I  V  R  W  C  S  L  H  A  R  L  L  L  V  Y  T  H  H  I  S  V  N  Y  Y  L  T  N  Q  F  K  T  P  F  L  S  P  F  F  S  I  T  K  R  Y  N  M  E  Q  N  G  Y  *  *  L  Y  M  P  I  L :   S  A  S  V  R  K  N  N  L  S  G  A  *  T  A  K  R  K  I  F  I  K  M  T  S  L  G  N  Y  T  T  H  S  T  N  G  H  S  N  I  L  R  H  E  K  C  D  A  Y  L  L  F  H  L  E  T  A  L  G  G  G  F  R  T  F  L  Y  F  L  G  L  A  Y  C  F  I  G  L  S  A  I  T  A  R  F  F  R  S  M  E  S  V  V  K  H  S  R  T  V  E  T  I  D  P  L  T  N  T  K  A  V  K  N  E  K  V  W  N  Y  T  I  A  D  I  T  L  L  A  F  G  T  S  F  P  Q  I  S  L  A  T  I  D  A  I  R  N  I  G  K  L  Y  A  G   : G  L  G  P  G  T  L  V  G  S  A  A  F  D  L  F  P  I  H  A  V  C  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0115P13.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83609" stop="83189"/>
                    <exon start="82091" stop="82024"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TAKRKIFIKMTSLGNYTTHSTNGHSNILRHEKCDAYLLFHLETALGGGFRTFLYFLGLAYCFIGLSAITARFFRSMESVVKHSRTVETIDPLTNTKAVKNEKVWNYTIADITLLAFGTSFPQISLATIDAIRNIGKLYAGGLGPGTLVGSAAFDLFPIHAVCV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="91592" PGL_stop="87844"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91592" e_stop="90686"/>
            <exon e_start="88286" e_stop="87844"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.965" acc_prob="0.999" e_score="0.998"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="91592" e_stop="90686" e_length="907"/>
          </exon>
          <intron i_serial="1" don_prob="0.965" acc_prob="0.999">
            <gDNA_intron_boundary i_start="90685" i_stop="88287" i_length="2399"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="88286" e_stop="87844" e_length="443"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91592" stop="90686"/>
              <exon start="88286" stop="87844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90904" stop="90686"/>
              <exon start="88286" stop="87963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318295" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGTGGCGATCTTTTTTGATTTTGAGAATAGTACCCCAAATATCCATAGATACTTGTCGACAATTTTGCTTAATCGCCATTGATTTCAAAGATCCAGATCTTGTTCTTCATTGATAATTTAAGCTGTTTATAGATGAATTGAGGTGAATTTGAGCAGATTTGAACTCCATTGTAGGGTGTTTTCATGAAGTTTCAATGTCGCCTAAGACTCTAGATTCACGTCACGCCATTGAATCGTGTACGTATCATCTCCATTCTTGGAAACCCTTTCAGTTTCCGTCTCCGAATTCTAAAACCCTAGATTTAGATTCGCCAAAAACTTACTCCCCGTCGACCCATGGTGGGCTGCATACGAAGCGTCAATGTAGAGCGGATCGAACAACTTCGATTCCAATTGAAGCTCTTGATATGTCAAAGTTAAGTTTATTTGAGGAGGATAAGCCTTTATCGGTTCATAAACGGGAGAATCTTAGGTTGATAGCTGGTAAGAGGCGGAGACGTGGGTCTCGTTCGGTTTCCGGGAGGAGTAGTGATCGGAGTGGAACTAGAAGACGGTGTTGCTCGGTTGGAGCTTCAGCAGCTTATGGGACTTGTTCGGATTTTCCTGTTGCTGCGGGGACTGATTCAAGTGGGGAATTGTTCGTGAATGGGGATATGCATTGGACTTTGGATGTTAGTGAGGTTACAAAGAGTTTAAGGAAGGAGAAGGAAGGTGGTGGGGTTGGTGAAAGAGAGAATAATTTAAATGGTTTGTCTGTGCAAAGTGGGAATTTTGAGGGGTTGGGTAATGAGTCAGGGTATGGGAGTGAACCGGGGTATCGTGGTGATGCAGAGTTTGGATATGGTGATGAGTTTGATGAAGAAGAAGATGATCAACGGCTTTCCTTCTGGGGCGATGAATTTGGAG : CACTCTCTAGGATGGAGAAAGTTGGAGAGAACTCGTTGCAGAAGGTGCACCATAGATGTCGGCGGAGGAAACAAGATTGTCGAATGGTGATCCCTTGAGGTTTGCTGATGTTGATGAGTGTGATTGATAGCCGGTTCCAAGATTTTGCCAGTGATACAATCGTGTAATTCATGAGCAGAACCTTTTTGGGTTTGAATACAGAATCTGCTGCTGTAAATATGAACAAATGATGTTAATTGTTCATGTCTTATTGTCATGGTACCCCTGATGTTCACCATGGTATGTTTTGGTTGGGGATTAGACAAGTTAGTATATTGTACTATTTAAGGGGTCGTTTGATAGTGTGTAAGAGTAGCGTTGAATATTGTGTATTAGTAATACTGTGATTATCTTTTGTTGTGTTCTATTTCTTTTGGTATATTAAACATAACATGTTTTGCCTA</gDNA_template>
            <first_frame> *  W  R  S  F  L  I  L  R  I  V  P  Q  I  S  I  D  T  C  R  Q  F  C  L  I  A  I  D  F  K  D  P  D  L  V  L  H  *  *  F  K  L  F  I  D  E  L  R  *  I  *  A  D  L  N  S  I  V  G  C  F  H  E  V  S  M  S  P  K  T  L  D  S  R  H  A  I  E  S  C  T  Y  H  L  H  S  W  K  P  F  Q  F  P  S  P  N  S  K  T  L  D  L  D  S  P  K  T  Y  S  P  S  T  H  G  G  L  H  T  K  R  Q  C  R  A  D  R  T  T  S  I  P  I  E  A  L  D  M  S  K  L  S  L  F  E  E  D  K  P  L  S  V  H  K  R  E  N  L  R  L  I  A  G  K  R  R  R  R  G  S  R  S  V  S  G  R  S  S  D  R  S  G  T  R  R  R  C  C  S  V  G  A  S  A  A  Y  G  T  C  S  D  F  P  V  A  A  G  T  D  S  S  G  E  L  F  V  N  G  D  M  H  W  T  L  D  V  S  E  V  T  K  S  L  R  K  E  K  E  G  G  G  V  G  E  R  E  N  N  L  N  G  L  S  V  Q  S  G  N  F  E  G  L  G  N  E  S  G  Y  G  S  E  P  G  Y  R  G  D  A  E  F  G  Y  G  D  E  F  D  E  E  E  D  D  Q  R  L  S  F  W  G  D  E  F  G   : A  L  S  R  M  E  K  V  G  E  N  S  L  Q  K  V  H  H  R  C  R  R  R  K  Q  D  C  R  M  V  I  P  *  G  L  L  M  L  M  S  V  I  D  S  R  F  Q  D  F  A  S  D  T  I  V  *  F  M  S  R  T  F  L  G  L  N  T  E  S  A  A  V  N  M  N  K  *  C  *  L  F  M  S  Y  C  H  G  T  P  D  V  H  H  G  M  F  W  L  G  I  R  Q  V  S  I  L  Y  Y  L  R  G  R  L  I  V  C  K  S  S  V  E  Y  C  V  L  V  I  L  *  L  S  F  V  V  F  Y  F  F  W  Y  I  K  H  N  M  F  C  L </first_frame>
            <second_frame>  S  G  D  L  F  *  F  *  E  *  Y  P  K  Y  P  *  I  L  V  D  N  F  A  *  S  P  L  I  S  K  I  Q  I  L  F  F  I  D  N  L  S  C  L  *  M  N  *  G  E  F  E  Q  I  *  T  P  L  *  G  V  F  M  K  F  Q  C  R  L  R  L  *  I  H  V  T  P  L  N  R  V  R  I  I  S  I  L  G  N  P  F  S  F  R  L  R  I  L  K  P  *  I  *  I  R  Q  K  L  T  P  R  R  P  M  V  G  C  I  R  S  V  N  V  E  R  I  E  Q  L  R  F  Q  L  K  L  L  I  C  Q  S  *  V  Y  L  R  R  I  S  L  Y  R  F  I  N  G  R  I  L  G  *  *  L  V  R  G  G  D  V  G  L  V  R  F  P  G  G  V  V  I  G  V  E  L  E  D  G  V  A  R  L  E  L  Q  Q  L  M  G  L  V  R  I  F  L  L  L  R  G  L  I  Q  V  G  N  C  S  *  M  G  I  C  I  G  L  W  M  L  V  R  L  Q  R  V  *  G  R  R  R  K  V  V  G  L  V  K  E  R  I  I  *  M  V  C  L  C  K  V  G  I  L  R  G  W  V  M  S  Q  G  M  G  V  N  R  G  I  V  V  M  Q  S  L  D  M  V  M  S  L  M  K  K  K  M  I  N  G  F  P  S  G  A  M  N  L  E  :  H  S  L  G  W  R  K  L  E  R  T  R  C  R  R  C  T  I  D  V  G  G  G  N  K  I  V  E  W  *  S  L  E  V  C  *  C  *  *  V  *  L  I  A  G  S  K  I  L  P  V  I  Q  S  C  N  S  *  A  E  P  F  W  V  *  I  Q  N  L  L  L  *  I  *  T  N  D  V  N  C  S  C  L  I  V  M  V  P  L  M  F  T  M  V  C  F  G  W  G  L  D  K  L  V  Y  C  T  I  *  G  V  V  *  *  C  V  R  V  A  L  N  I  V  Y  *  *  Y  C  D  Y  L  L  L  C  S  I  S  F  G  I  L  N  I  T  C  F  A   </second_frame>
            <third_frame>   V  A  I  F  F  D  F  E  N  S  T  P  N  I  H  R  Y  L  S  T  I  L  L  N  R  H  *  F  Q  R  S  R  S  C  S  S  L  I  I  *  A  V  Y  R  *  I  E  V  N  L  S  R  F  E  L  H  C  R  V  F  S  *  S  F  N  V  A  *  D  S  R  F  T  S  R  H  *  I  V  Y  V  S  S  P  F  L  E  T  L  S  V  S  V  S  E  F  *  N  P  R  F  R  F  A  K  N  L  L  P  V  D  P  W  W  A  A  Y  E  A  S  M  *  S  G  S  N  N  F  D  S  N  *  S  S  *  Y  V  K  V  K  F  I  *  G  G  *  A  F  I  G  S  *  T  G  E  S  *  V  D  S  W  *  E  A  E  T  W  V  S  F  G  F  R  E  E  *  *  S  E  W  N  *  K  T  V  L  L  G  W  S  F  S  S  L  W  D  L  F  G  F  S  C  C  C  G  D  *  F  K  W  G  I  V  R  E  W  G  Y  A  L  D  F  G  C  *  *  G  Y  K  E  F  K  E  G  E  G  R  W  W  G  W  *  K  R  E  *  F  K  W  F  V  C  A  K  W  E  F  *  G  V  G  *  *  V  R  V  W  E  *  T  G  V  S  W  *  C  R  V  W  I  W  *  *  V  *  *  R  R  R  *  S  T  A  F  L  L  G  R  *  I  W  S :   T  L  *  D  G  E  S  W  R  E  L  V  A  E  G  A  P  *  M  S  A  E  E  T  R  L  S  N  G  D  P  L  R  F  A  D  V  D  E  C  D  *  *  P  V  P  R  F  C  Q  *  Y  N  R  V  I  H  E  Q  N  L  F  G  F  E  Y  R  I  C  C  C  K  Y  E  Q  M  M  L  I  V  H  V  L  L  S  W  Y  P  *  C  S  P  W  Y  V  L  V  G  D  *  T  S  *  Y  I  V  L  F  K  G  S  F  D  S  V  *  E  *  R  *  I  L  C  I  S  N  T  V  I  I  F  C  C  V  L  F  L  L  V  Y  *  T  *  H  V  L  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0115P13.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91439" stop="90686"/>
                    <exon start="88286" stop="88189"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>849</number_coding_nucleotides>
                  <number_encoded_amino_acids>283</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ADLNSIVGCFHEVSMSPKTLDSRHAIESCTYHLHSWKPFQFPSPNSKTLDLDSPKTYSPSTHGGLHTKRQCRADRTTSIPIEALDMSKLSLFEEDKPLSVHKRENLRLIAGKRRRRGSRSVSGRSSDRSGTRRRCCSVGASAAYGTCSDFPVAAGTDSSGELFVNGDMHWTLDVSEVTKSLRKEKEGGGVGERENNLNGLSVQSGNFEGLGNESGYGSEPGYRGDAEFGYGDEFDEEEDDQRLSFWGDEFGALSRMEKVGENSLQKVHHRCRRRKQDCRMVIP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="104668" PGL_stop="109483"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104668" e_stop="105104"/>
            <exon e_start="106828" e_stop="106945"/>
            <exon e_start="107088" e_stop="107314"/>
            <exon e_start="107604" e_stop="107837"/>
            <exon e_start="107931" e_stop="108069"/>
            <exon e_start="108146" e_stop="108340"/>
            <exon e_start="108428" e_stop="108500"/>
            <exon e_start="108688" e_stop="108784"/>
            <exon e_start="108876" e_stop="109057"/>
            <exon e_start="109449" e_stop="109483"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.894" e_score="1.000"/>
          <exon-intron don_prob="0.605" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="0.421" acc_prob="0.996" e_score="0.986"/>
          <exon-intron don_prob="0.651" acc_prob="0.854" e_score="0.959"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.714"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="104668" e_stop="105104" e_length="437"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.960">
            <gDNA_intron_boundary i_start="105105" i_stop="106827" i_length="1723"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="106828" e_stop="106945" e_length="118"/>
          </exon>
          <intron i_serial="2" don_prob="0.965" acc_prob="0.998">
            <gDNA_intron_boundary i_start="106946" i_stop="107087" i_length="142"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="107088" e_stop="107314" e_length="227"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.894">
            <gDNA_intron_boundary i_start="107315" i_stop="107603" i_length="289"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="107604" e_stop="107837" e_length="234"/>
          </exon>
          <intron i_serial="4" don_prob="0.605" acc_prob="0.972">
            <gDNA_intron_boundary i_start="107838" i_stop="107930" i_length="93"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="107931" e_stop="108069" e_length="139"/>
          </exon>
          <intron i_serial="5" don_prob="0.952" acc_prob="0.999">
            <gDNA_intron_boundary i_start="108070" i_stop="108145" i_length="76"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="108146" e_stop="108340" e_length="195"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.916">
            <gDNA_intron_boundary i_start="108341" i_stop="108427" i_length="87"/>
          </intron>
          <exon e_serial="7" e_score="0.986">
            <gDNA_exon_boundary e_start="108428" e_stop="108500" e_length="73"/>
          </exon>
          <intron i_serial="7" don_prob="0.421" acc_prob="0.996">
            <gDNA_intron_boundary i_start="108501" i_stop="108687" i_length="187"/>
          </intron>
          <exon e_serial="8" e_score="0.959">
            <gDNA_exon_boundary e_start="108688" e_stop="108784" e_length="97"/>
          </exon>
          <intron i_serial="8" don_prob="0.651" acc_prob="0.854">
            <gDNA_intron_boundary i_start="108785" i_stop="108875" i_length="91"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="108876" e_stop="109057" e_length="182"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="109058" i_stop="109448" i_length="391"/>
          </intron>
          <exon e_serial="10" e_score="0.714">
            <gDNA_exon_boundary e_start="109449" e_stop="109483" e_length="35"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104668" stop="105104"/>
              <exon start="106828" stop="106891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104690" stop="105104"/>
              <exon start="106828" stop="106945"/>
              <exon start="107088" stop="107111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106844" stop="106945"/>
              <exon start="107088" stop="107314"/>
              <exon start="107604" stop="107818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106844" stop="106945"/>
              <exon start="107088" stop="107314"/>
              <exon start="107604" stop="107803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106884" stop="106945"/>
              <exon start="107088" stop="107314"/>
              <exon start="107604" stop="107837"/>
              <exon start="107931" stop="108069"/>
              <exon start="108146" stop="108198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107099" stop="107314"/>
              <exon start="107604" stop="107837"/>
              <exon start="107931" stop="107984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107195" stop="107314"/>
              <exon start="107604" stop="107837"/>
              <exon start="107931" stop="108069"/>
              <exon start="108146" stop="108340"/>
              <exon start="108428" stop="108447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107634" stop="107837"/>
              <exon start="107931" stop="108069"/>
              <exon start="108146" stop="108340"/>
              <exon start="108428" stop="108500"/>
              <exon start="108688" stop="108784"/>
              <exon start="108876" stop="108949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107938" stop="108069"/>
              <exon start="108146" stop="108340"/>
              <exon start="108428" stop="108500"/>
              <exon start="108688" stop="108722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108754" stop="108784"/>
              <exon start="108876" stop="109057"/>
              <exon start="109449" stop="109483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544929" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGTCTTCTCTTTCCCCGTGCTTTCTTCCTACACGTGAAATTGACGGAGTCCCCATTTTTCTCATTCGCCATTAACGCTTCAGTCCAAACTTCACCTTCCCCAGCTCCCATTTTTCTACAATCTCTTCATATATAGTTACTTGCTTGACCCATTTATTTTTTTTTTTGGTGATTTTTGAGAAATTTTTTTATAAATCTTTCTGTTCCCAAAATTACCTGTTCAACCTAGAATCAATCTTATTTGTTTGATCGGAAAATCAATTATGAGAGGAAAATGGGAAGTAGTACGAATTTGGGTGTTGTATTTACTGCTTCTATCTGAGTTCTTTCAGGGATGTTTTTCTGCTTTTAACCTGCCTCGTCCACCATGGAAGAAACAGTCAAATTTTGGTTCCTCTGTTGTTTTTCCACTTTTTGGGAATGTGTATCCAAAAGG : GTATTATCAGGTGACACTCAATGTAGGCCAACCCCCCAAACCTTACTTTCTTGACATTGACACAGGGAGTGATCTCACTTGGCTCCAATGTGACGCACCTTGTGTCAAATGTATTCCA : GCACCTCACAGTCCGTACAAACCGAATAAAAATGTTATCAAGCATAAGGATCCCATTTGTGCATCCCTTCACTCACCTGCAAACCATCCCCGTTACAGTCCTGACGATCAATGTGACTATGAGGTTGAGTATGCGGATCATTGTTCATCCTTGGGAGTGCTGGTCAGAGACGCATTTCCAGTAAAATTCACCAACGGTAGCTCCATTGCTCCTCCTCTGGTGTTCGG : TTGTGGGTATGATCAAGAAGTCCCAGCCTCTGAGCATGCACCTTATACGGATGGAATTCTTGGCCTAGGGAATGGAAAATCAAGCATAGTATCACAGTTGAGTAGCTTGGGTTTTATCCGGAATGTAGTAGGTCACTGTTTAAGCGGGCAAGGTGGAGGTTTTCTTTTCCTTGGAGATGATGTTGTCCCGTCTTCTGGGATTGTTTGGTCACCTATCGTCTGTGAATCTTCAGA : GAAACATTATTCTTTGGGACCGGCAGATCTCCTTTTTGGTGGGCAGGCAACTGGGATGAAGAGTCTACCGATAATTTTAGACAGTGGAAGTACCTTTACCTACTTCAATTCCGAAGCTTACAAAACTCTGTTGTCTTCG : ATTAAGAAAAACATAGATGCAAAGCAGCTGACTGATGCAGTGAACGACAAAAGTTTGCCCGTCTGCTGGAAAGGCTCCAAACCTTTCAAATCCCTTAAAGATGCTACGAGGTACTTCAAGCCATTGACACTTAGTTTCACAAAAGCTAAGAATATTCAGCTTCAACTGACACCCGAAGCTTATCTTATTCATACT : AATAAGGGCAATGTATGCTTAGGGATACTGAACGGTTCGGAGGTTGGATTAGGAGCTGTTAATATCATCGGAG : ATATTTCTATGTTAGACAAAATGGTGATTTACGACAACGAAAAACAGCAGATTGGATGGGTTCCCGCAAACTGCAACAAGCTTCCATCGTTGTCCTG : AATATATCAATGATTACAGTGAAAATTTTGGTGACATACCATAGGAAGAAGCAAGCAGAAAGTATGTCAGTATTGTAAGCATACCAATGTTTGCTATATTACAGCATATTTTAGTTTGATTTGTAATACAGAAAATTCACTGTAATCACCCATATATATATATATATAACAGCCTTATATGT : AAAGTCAAAAGTAAAATAGAAAAACAAATAAGAGA</gDNA_template>
            <first_frame> K  V  F  S  F  P  V  L  S  S  Y  T  *  N  *  R  S  P  H  F  S  H  S  P  L  T  L  Q  S  K  L  H  L  P  Q  L  P  F  F  Y  N  L  F  I  Y  S  Y  L  L  D  P  F  I  F  F  F  G  D  F  *  E  I  F  L  *  I  F  L  F  P  K  L  P  V  Q  P  R  I  N  L  I  C  L  I  G  K  S  I  M  R  G  K  W  E  V  V  R  I  W  V  L  Y  L  L  L  L  S  E  F  F  Q  G  C  F  S  A  F  N  L  P  R  P  P  W  K  K  Q  S  N  F  G  S  S  V  V  F  P  L  F  G  N  V  Y  P  K  G :   Y  Y  Q  V  T  L  N  V  G  Q  P  P  K  P  Y  F  L  D  I  D  T  G  S  D  L  T  W  L  Q  C  D  A  P  C  V  K  C  I  P  :  A  P  H  S  P  Y  K  P  N  K  N  V  I  K  H  K  D  P  I  C  A  S  L  H  S  P  A  N  H  P  R  Y  S  P  D  D  Q  C  D  Y  E  V  E  Y  A  D  H  C  S  S  L  G  V  L  V  R  D  A  F  P  V  K  F  T  N  G  S  S  I  A  P  P  L  V  F  G :   C  G  Y  D  Q  E  V  P  A  S  E  H  A  P  Y  T  D  G  I  L  G  L  G  N  G  K  S  S  I  V  S  Q  L  S  S  L  G  F  I  R  N  V  V  G  H  C  L  S  G  Q  G  G  G  F  L  F  L  G  D  D  V  V  P  S  S  G  I  V  W  S  P  I  V  C  E  S  S  E :   K  H  Y  S  L  G  P  A  D  L  L  F  G  G  Q  A  T  G  M  K  S  L  P  I  I  L  D  S  G  S  T  F  T  Y  F  N  S  E  A  Y  K  T  L  L  S  S  :  I  K  K  N  I  D  A  K  Q  L  T  D  A  V  N  D  K  S  L  P  V  C  W  K  G  S  K  P  F  K  S  L  K  D  A  T  R  Y  F  K  P  L  T  L  S  F  T  K  A  K  N  I  Q  L  Q  L  T  P  E  A  Y  L  I  H  T  :  N  K  G  N  V  C  L  G  I  L  N  G  S  E  V  G  L  G  A  V  N  I  I  G   : D  I  S  M  L  D  K  M  V  I  Y  D  N  E  K  Q  Q  I  G  W  V  P  A  N  C  N  K  L  P  S  L  S  * :   I  Y  Q  *  L  Q  *  K  F  W  *  H  T  I  G  R  S  K  Q  K  V  C  Q  Y  C  K  H  T  N  V  C  Y  I  T  A  Y  F  S  L  I  C  N  T  E  N  S  L  *  S  P  I  Y  I  Y  I  *  Q  P  Y  M   : *  S  Q  K  *  N  R  K  T  N  K  R </first_frame>
            <second_frame>  K  S  S  L  S  P  C  F  L  P  T  R  E  I  D  G  V  P  I  F  L  I  R  H  *  R  F  S  P  N  F  T  F  P  S  S  H  F  S  T  I  S  S  Y  I  V  T  C  L  T  H  L  F  F  F  L  V  I  F  E  K  F  F  Y  K  S  F  C  S  Q  N  Y  L  F  N  L  E  S  I  L  F  V  *  S  E  N  Q  L  *  E  E  N  G  K  *  Y  E  F  G  C  C  I  Y  C  F  Y  L  S  S  F  R  D  V  F  L  L  L  T  C  L  V  H  H  G  R  N  S  Q  I  L  V  P  L  L  F  F  H  F  L  G  M  C  I  Q  K   : G  I  I  R  *  H  S  M  *  A  N  P  P  N  L  T  F  L  T  L  T  Q  G  V  I  S  L  G  S  N  V  T  H  L  V  S  N  V  F  Q :   H  L  T  V  R  T  N  R  I  K  M  L  S  S  I  R  I  P  F  V  H  P  F  T  H  L  Q  T  I  P  V  T  V  L  T  I  N  V  T  M  R  L  S  M  R  I  I  V  H  P  W  E  C  W  S  E  T  H  F  Q  *  N  S  P  T  V  A  P  L  L  L  L  W  C  S   : V  V  G  M  I  K  K  S  Q  P  L  S  M  H  L  I  R  M  E  F  L  A  *  G  M  E  N  Q  A  *  Y  H  S  *  V  A  W  V  L  S  G  M  *  *  V  T  V  *  A  G  K  V  E  V  F  F  S  L  E  M  M  L  S  R  L  L  G  L  F  G  H  L  S  S  V  N  L  Q   : R  N  I  I  L  W  D  R  Q  I  S  F  L  V  G  R  Q  L  G  *  R  V  Y  R  *  F  *  T  V  E  V  P  L  P  T  S  I  P  K  L  T  K  L  C  C  L  R :   L  R  K  T  *  M  Q  S  S  *  L  M  Q  *  T  T  K  V  C  P  S  A  G  K  A  P  N  L  S  N  P  L  K  M  L  R  G  T  S  S  H  *  H  L  V  S  Q  K  L  R  I  F  S  F  N  *  H  P  K  L  I  L  F  I  L :   I  R  A  M  Y  A  *  G  Y  *  T  V  R  R  L  D  *  E  L  L  I  S  S  E  :  I  F  L  C  *  T  K  W  *  F  T  T  T  K  N  S  R  L  D  G  F  P  Q  T  A  T  S  F  H  R  C  P   : E  Y  I  N  D  Y  S  E  N  F  G  D  I  P  *  E  E  A  S  R  K  Y  V  S  I  V  S  I  P  M  F  A  I  L  Q  H  I  L  V  *  F  V  I  Q  K  I  H  C  N  H  P  Y  I  Y  I  Y  N  S  L  I  C  :  K  V  K  S  K  I  E  K  Q  I  R   </second_frame>
            <third_frame>   S  L  L  F  P  R  A  F  F  L  H  V  K  L  T  E  S  P  F  F  S  F  A  I  N  A  S  V  Q  T  S  P  S  P  A  P  I  F  L  Q  S  L  H  I  *  L  L  A  *  P  I  Y  F  F  F  W  *  F  L  R  N  F  F  I  N  L  S  V  P  K  I  T  C  S  T  *  N  Q  S  Y  L  F  D  R  K  I  N  Y  E  R  K  M  G  S  S  T  N  L  G  V  V  F  T  A  S  I  *  V  L  S  G  M  F  F  C  F  *  P  A  S  S  T  M  E  E  T  V  K  F  W  F  L  C  C  F  S  T  F  W  E  C  V  S  K  R  :  V  L  S  G  D  T  Q  C  R  P  T  P  Q  T  L  L  S  *  H  *  H  R  E  *  S  H  L  A  P  M  *  R  T  L  C  Q  M  Y  S   : S  T  S  Q  S  V  Q  T  E  *  K  C  Y  Q  A  *  G  S  H  L  C  I  P  S  L  T  C  K  P  S  P  L  Q  S  *  R  S  M  *  L  *  G  *  V  C  G  S  L  F  I  L  G  S  A  G  Q  R  R  I  S  S  K  I  H  Q  R  *  L  H  C  S  S  S  G  V  R  :  L  W  V  *  S  R  S  P  S  L  *  A  C  T  L  Y  G  W  N  S  W  P  R  E  W  K  I  K  H  S  I  T  V  E  *  L  G  F  Y  P  E  C  S  R  S  L  F  K  R  A  R  W  R  F  S  F  P  W  R  *  C  C  P  V  F  W  D  C  L  V  T  Y  R  L  *  I  F  R  :  E  T  L  F  F  G  T  G  R  S  P  F  W  W  A  G  N  W  D  E  E  S  T  D  N  F  R  Q  W  K  Y  L  Y  L  L  Q  F  R  S  L  Q  N  S  V  V  F   : D  *  E  K  H  R  C  K  A  A  D  *  C  S  E  R  Q  K  F  A  R  L  L  E  R  L  Q  T  F  Q  I  P  *  R  C  Y  E  V  L  Q  A  I  D  T  *  F  H  K  S  *  E  Y  S  A  S  T  D  T  R  S  L  S  Y  S  Y   : *  *  G  Q  C  M  L  R  D  T  E  R  F  G  G  W  I  R  S  C  *  Y  H  R  R :   Y  F  Y  V  R  Q  N  G  D  L  R  Q  R  K  T  A  D  W  M  G  S  R  K  L  Q  Q  A  S  I  V  V  L  :  N  I  S  M  I  T  V  K  I  L  V  T  Y  H  R  K  K  Q  A  E  S  M  S  V  L  *  A  Y  Q  C  L  L  Y  Y  S  I  F  *  F  D  L  *  Y  R  K  F  T  V  I  T  H  I  Y  I  Y  I  T  A  L  Y  V :   K  S  K  V  K  *  K  N  K  *  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0115P13.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104863" stop="105104"/>
                    <exon start="106828" stop="106945"/>
                    <exon start="107088" stop="107314"/>
                    <exon start="107604" stop="107837"/>
                    <exon start="107931" stop="108069"/>
                    <exon start="108146" stop="108340"/>
                    <exon start="108428" stop="108500"/>
                    <exon start="108688" stop="108876"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1323</number_coding_nucleotides>
                  <number_encoded_amino_acids>441</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFLFPKLPVQPRINLICLIGKSIMRGKWEVVRIWVLYLLLLSEFFQGCFSAFNLPRPPWKKQSNFGSSVVFPLFGNVYPKGYYQVTLNVGQPPKPYFLDIDTGSDLTWLQCDAPCVKCIPAPHSPYKPNKNVIKHKDPICASLHSPANHPRYSPDDQCDYEVEYADHCSSLGVLVRDAFPVKFTNGSSIAPPLVFGCGYDQEVPASEHAPYTDGILGLGNGKSSIVSQLSSLGFIRNVVGHCLSGQGGGFLFLGDDVVPSSGIVWSPIVCESSEKHYSLGPADLLFGGQATGMKSLPIILDSGSTFTYFNSEAYKTLLSSIKKNIDAKQLTDAVNDKSLPVCWKGSKPFKSLKDATRYFKPLTLSFTKAKNIQLQLTPEAYLIHTNKGNVCLGILNGSEVGLGAVNIIGDISMLDKMVIYDNEKQQIGWVPANCNKLPSLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="106386" e_stop="106617"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="106386" e_stop="106617" e_length="232"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106386" stop="106617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475993" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATATATCATTCTTTCCAGAGACATCCCTAGAAGACCGACTTCTCATCTTTTCAACAAAGATAAAGGAAGAACTTGCATTGTTATTTCAATTTGAACATAGGCTTGATTCACCATCCATGATCGGAGAAAGATTTATCGTCTGAAAAACTGGAGTCTTTGTCTAAAGAAATGCGTTGAGAAAGGACAGATGTATCTGGGTTTTGCTGGGATGCAATGGGCTTGCTTACACAAA</gDNA_template>
            <first_frame> I  Y  H  S  F  Q  R  H  P  *  K  T  D  F  S  S  F  Q  Q  R  *  R  K  N  L  H  C  Y  F  N  L  N  I  G  L  I  H  H  P  *  S  E  K  D  L  S  S  E  K  L  E  S  L  S  K  E  M  R  *  E  R  T  D  V  S  G  F  C  W  D  A  M  G  L  L  T  Q  </first_frame>
            <second_frame>  Y  I  I  L  S  R  D  I  P  R  R  P  T  S  H  L  F  N  K  D  K  G  R  T  C  I  V  I  S  I  *  T  *  A  *  F  T  I  H  D  R  R  K  I  Y  R  L  K  N  W  S  L  C  L  K  K  C  V  E  K  G  Q  M  Y  L  G  F  A  G  M  Q  W  A  C  L  H  K </second_frame>
            <third_frame>   I  S  F  F  P  E  T  S  L  E  D  R  L  L  I  F  S  T  K  I  K  E  E  L  A  L  L  F  Q  F  E  H  R  L  D  S  P  S  M  I  G  E  R  F  I  V  *  K  T  G  V  F  V  *  R  N  A  L  R  K  D  R  C  I  W  V  L  L  G  C  N  G  L  A  Y  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLm0115P13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="131899" PGL_stop="131452"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="131899" e_stop="131452"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="131899" e_stop="131452" e_length="448"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131899" stop="131578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131899" stop="131594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131898" stop="131452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTATAACAAGAAGATATATGTTTTTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTTGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAATTATACACTTTTGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTCTTGGGAGAGAGACGCTGACAAATTTTAGCTAATGTTTGCTATGGAGCACAATTAAATCAAACCCTAGCTATTTCATTTAATTTAAGTTATTAG</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  I  T  R  R  Y  M  F  F  S  L  Y  T  K  T  E  T  Q  Y  I  H  F  C  C  I  K  L  E  K  I  V  F  H  C  N  C  I  I  R  N  C  I  I  C  W  P  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  I  F  A  C  V  Y  T  I  F  S  R  F  I  Q  N  R  N  R  I  I  H  F  C  V  *  S  E  R  G  E  R  E  W  R  V  A  S  E  I  L  G  R  E  T  L  T  N  F  S  *  C  L  L  W  S  T  I  K  S  N  P  S  Y  F  I  *  F  K  L  L  </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  Q  E  D  I  C  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  T  S  V  V  *  S  *  R  K  L  Y  F  T  A  I  V  *  F  A  I  V  *  F  V  G  L  F  L  C  N  I  *  S  K  M  F  V  N  C  I  I  K  C  I  T  R  R  Y  T  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  E  T  E  L  Y  T  F  V  Y  K  A  R  E  A  S  E  N  G  E  W  R  A  R  F  L  G  E  R  R  *  Q  I  L  A  N  V  C  Y  G  A  Q  L  N  Q  T  L  A  I  S  F  N  L  S  Y  * </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  N  K  K  I  Y  V  F  L  A  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  A  R  E  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  L  L  A  F  F  S  A  I  F  E  V  K  C  L  *  I  V  *  L  S  V  *  H  E  D  I  H  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  Q  K  Q  N  Y  T  L  L  C  I  K  R  E  R  R  A  R  M  E  S  G  E  R  D  S  W  E  R  D  A  D  K  F  *  L  M  F  A  M  E  H  N  *  I  K  P  *  L  F  H  L  I  *  V  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLm0115P13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="160091" PGL_stop="160376"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="160091" e_stop="160376"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="160091" e_stop="160376" e_length="286"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="160091" stop="160376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGAAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGACTATAAGACTTTAGGAAAATTCCATTCTTTCTTTCTTTCTTTCGTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACTGCACCAACACCAACACCGGCAAGACAAGGAGCGTCTGAGCCAGCCACTGGGGCTGTAG</gDNA_template>
            <first_frame> L  G  S  L  V  S  S  H  K  N  E  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  F  E  R  L  *  D  F  R  K  I  P  F  F  L  S  F  F  R  A  I  T  W  V  Q  L  V  S  R  *  Y  K  L  V  S  D  H  L  H  S  I  S  Q  M  V  R  T  R  A  T  T  A  P  T  P  T  P  A  R  Q  G  A  S  E  P  A  T  G  A  V  </first_frame>
            <second_frame>  *  V  R  W  S  H  H  T  R  T  S  L  V  E  S  *  E  T  V  G  G  R  L  Y  F  S  L  R  D  Y  K  T  L  G  K  F  H  S  F  F  L  S  F  V  L  L  L  G  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  R  L  H  Q  H  Q  H  R  Q  D  K  E  R  L  S  Q  P  L  G  L  * </second_frame>
            <third_frame>   R  F  V  G  L  I  T  Q  E  R  V  *  *  S  L  K  K  R  *  G  D  A  F  T  F  L  *  E  T  I  R  L  *  E  N  S  I  L  S  F  F  L  S  C  Y  Y  L  G  P  I  G  I  *  V  I  Q  I  G  I  *  P  S  S  L  Y  F  A  D  G  *  N  *  S  N  D  C  T  N  T  N  T  G  K  T  R  S  V  *  A  S  H  W  G  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0115P13.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="160140" stop="160376"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ETVGGRLYFSLRDYKTLGKFHSFFLSFVLLLGSNWYLGDTNWYLTIFTLFRRWLELEQRLHQHQHRQDKERLSQPLGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="160450" PGL_stop="161003"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="160450" e_stop="161003"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="160450" e_stop="161003" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="160450" stop="161003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTAGCCCATCTGATACTAGGGCGGTGACTCCTCCACCGACAGAGGAAGTAGTAAGAGAAGGGGAGGATGGGGAAAACGAACAAGTACAGAATGAGGAATTACCACCCCAACCTACCCCAGAGATGATAAATCAGGTGCTTGCTTATCTTAGTGGGTTATCTGATCAAGGTCAAACACCTTCAGTGTTTTCTGCACTAGCACCTCAGGGTCTGGAAGTACAACAGGCAACTGCTGCGGCTCCCCGCATGGATATTCCATTAGAAATAGGCACGTTTCCTCGCCTGACTACAGGGCCTATAATGACAAATGATCAACATGAACTTTTCAGTAAGTTCTTGAAATTAAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAATGGCTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</gDNA_template>
            <first_frame> T  *  P  I  *  Y  *  G  G  D  S  S  T  D  R  G  S  S  K  R  R  G  G  W  G  K  R  T  S  T  E  *  G  I  T  T  P  T  Y  P  R  D  D  K  S  G  A  C  L  S  *  W  V  I  *  S  R  S  N  T  F  S  V  F  C  T  S  T  S  G  S  G  S  T  T  G  N  C  C  G  S  P  H  G  Y  S  I  R  N  R  H  V  S  S  P  D  Y  R  A  Y  N  D  K  *  S  T  *  T  F  Q  *  V  L  E  I  K  T  S  S  L  Q  G  C  *  I  *  G  C  L  *  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  M  A  W  C  *  V  C  D  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  I  I   </first_frame>
            <second_frame>  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  V  R  E  G  E  D  G  E  N  E  Q  V  Q  N  E  E  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  S  V  F  S  A  L  A  P  Q  G  L  E  V  Q  Q  A  T  A  A  A  P  R  M  D  I  P  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  W  L  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  I  L  G  R  *  L  L  H  R  Q  R  K  *  *  E  K  G  R  M  G  K  T  N  K  Y  R  M  R  N  Y  H  P  N  L  P  Q  R  *  *  I  R  C  L  L  I  L  V  G  Y  L  I  K  V  K  H  L  Q  C  F  L  H  *  H  L  R  V  W  K  Y  N  R  Q  L  L  R  L  P  A  W  I  F  H  *  K  *  A  R  F  L  A  *  L  Q  G  L  *  *  Q  M  I  N  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  P  M  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  L  *  L  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  H  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0115P13.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="160451" stop="161002"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSDTRAVTPPPTEEVVREGEDGENEQVQNEELPPQPTPEMINQVLAYLSGLSDQGQTPSVFSALAPQGLEVQQATAAAPRMDIPLEIGTFPRLTTGPIMTNDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVEWLGVEFVTYQFQGNAKMWWRSHVECQPTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="161077" PGL_stop="162507"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="161077" e_stop="161263"/>
            <exon e_start="162044" e_stop="162507"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.888"/>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.888">
            <gDNA_exon_boundary e_start="161077" e_stop="161263" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="161264" i_stop="162043" i_length="780"/>
          </intron>
          <exon e_serial="2" e_score="0.918">
            <gDNA_exon_boundary e_start="162044" e_stop="162507" e_length="464"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="161077" stop="161263"/>
              <exon start="162044" stop="162507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAGGCAGGATGTCGGTTTCTGCCTATGAGGCTAAGTTTCGTGCACTCTCCAGGTATGCCACCCAACTGTGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGGTCAGAATTGCAGATTTCAGCCTTACAGATAGCGGCTACGGCAAAATTCTTTCAAGAAGTGGTAGACTTC : GATGTAATTCTGGGTATGACTTGGCTTTCTCCGAATTTTGCGATATTGGATTGTAATGCTAAAATTGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTTCGTATCATCTCCTTTCTTCGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGACACTACCCAAGTACCTTCAATTGAGTCGGTTTCGGTAGTCCGTGAGTTTTTAGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGAGATATTGACTTCTGCATCGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAGGCCCAACTTCAAGAGTTGTTAAGTAAAGGTTTCATTAGACCAAGTGCATCCCCTTGGGGTGCTCCAGT</gDNA_template>
            <first_frame> A  R  Q  D  V  G  F  C  L  *  G  *  V  S  C  T  L  Q  V  C  H  P  T  V  F  Q  S  T  R  A  D  S  P  F  C  E  G  V  E  V  R  I  A  D  F  S  L  T  D  S  G  Y  G  K  I  L  S  R  S  G  R  L   : R  C  N  S  G  Y  D  L  A  F  S  E  F  C  D  I  G  L  *  C  *  N  C  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  S  Y  H  L  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  P  Q  G  *  H  Y  P  S  T  F  N  *  V  G  F  G  S  P  *  V  F  R  C  V  S  C  R  P  S  W  Y  A  T  G  *  R  Y  *  L  L  H  R  S  *  T  G  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  V  K  G  P  T  S  R  V  V  K  *  R  F  H  *  T  K  C  I  P  L  G  C  S  S </first_frame>
            <second_frame>  Q  G  R  M  S  V  S  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  Q  I  S  A  L  Q  I  A  A  T  A  K  F  F  Q  E  V  V  D  F  :  D  V  I  L  G  M  T  W  L  S  P  N  F  A  I  L  D  C  N  A  K  I  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  R  A  K  R  M  V  S  K  G  C  L  A  F  L  A  H  L  R  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  P  W  G  A  P   </second_frame>
            <third_frame>   K  A  G  C  R  F  L  P  M  R  L  S  F  V  H  S  P  G  M  P  P  N  C  V  S  V  H  K  S  G  F  A  V  L  *  R  G  *  G  Q  N  C  R  F  Q  P  Y  R  *  R  L  R  Q  N  S  F  K  K  W  *  T  S :   M  *  F  W  V  *  L  G  F  L  R  I  L  R  Y  W  I  V  M  L  K  L  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  F  V  S  S  P  F  F  V  L  R  E  W  L  V  K  G  V  *  L  S  W  H  T  S  G  M  T  L  P  K  Y  L  Q  L  S  R  F  R  *  S  V  S  F  *  M  C  F  L  Q  T  F  L  V  C  H  R  I  E  I  L  T  S  A  S  I  L  N  R  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  S  *  R  P  N  F  K  S  C  *  V  K  V  S  L  D  Q  V  H  P  L  G  V  L  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0115P13.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="161078" stop="161263"/>
                    <exon start="162044" stop="162505"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVSAYEAKFRALSRYATQLCFSPQERIRRFVKGLRSELQISALQIAATAKFFQEVVDFDVILGMTWLSPNFAILDCNAKIVTLAKPGTDPLVWEGDYTSNPVRIISFLRAKRMVSKGCLAFLAHLRDDTTQVPSIESVSVVREFLDVFPADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKAQLQELLSKGFIRPSASPWGAP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="161837" e_stop="162497"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="161837" e_stop="162497" e_length="661"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="161837" stop="162497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352117" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGACGCTGGATCCACATTTTCATATATATCTTCCTCATTTGCTACTGGTCTTAAATTAAATTGTGAATTGCTTGACATGCCTATTCATGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAGAAGGTGTATAGGTCTTGTCCTGTGACTTTTATGGAGAGCAATACTTATGTAGACTTGTTTATCTTAGAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGAATTTTGCGATATTGGATTGTAATGCTAAAATTGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTTCGTATCATCTCCTTTCTTCGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGACACTACCCAAGTACCTTCAATTGAGTCGGTTTCGGTAGTCCGTGAGTTTTTAGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGAGATATTGACTTCTGCATCGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAGGCCCAACTTCAAGAGTTGTTAAGTAAAGGTTTCATTAGACCAAGTGCATCCCCTTGGG</gDNA_template>
            <first_frame> F  D  A  G  S  T  F  S  Y  I  S  S  S  F  A  T  G  L  K  L  N  C  E  L  L  D  M  P  I  H  V  S  T  P  V  G  E  S  V  I  V  E  K  V  Y  R  S  C  P  V  T  F  M  E  S  N  T  Y  V  D  L  F  I  L  E  M  V  D  F  D  V  I  L  G  M  T  W  L  S  P  N  F  A  I  L  D  C  N  A  K  I  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  R  A  K  R  M  V  S  K  G  C  L  A  F  L  A  H  L  R  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  P  W  </first_frame>
            <second_frame>  L  T  L  D  P  H  F  H  I  Y  L  P  H  L  L  L  V  L  N  *  I  V  N  C  L  T  C  L  F  M  F  L  L  R  W  V  S  L  *  *  L  R  R  C  I  G  L  V  L  *  L  L  W  R  A  I  L  M  *  T  C  L  S  *  K  W  L  I  L  M  *  F  W  V  *  L  G  F  L  R  I  L  R  Y  W  I  V  M  L  K  L  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  F  V  S  S  P  F  F  V  L  R  E  W  L  V  K  G  V  *  L  S  W  H  T  S  G  M  T  L  P  K  Y  L  Q  L  S  R  F  R  *  S  V  S  F  *  M  C  F  L  Q  T  F  L  V  C  H  R  I  E  I  L  T  S  A  S  I  L  N  R  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  S  *  R  P  N  F  K  S  C  *  V  K  V  S  L  D  Q  V  H  P  L  G </second_frame>
            <third_frame>   *  R  W  I  H  I  F  I  Y  I  F  L  I  C  Y  W  S  *  I  K  L  *  I  A  *  H  A  Y  S  C  F  Y  S  G  G  *  V  C  D  S  *  E  G  V  *  V  L  S  C  D  F  Y  G  E  Q  Y  L  C  R  L  V  Y  L  R  N  G  *  F  *  C  N  S  G  Y  D  L  A  F  S  E  F  C  D  I  G  L  *  C  *  N  C  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  S  Y  H  L  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  P  Q  G  *  H  Y  P  S  T  F  N  *  V  G  F  G  S  P  *  V  F  R  C  V  S  C  R  P  S  W  Y  A  T  G  *  R  Y  *  L  L  H  R  S  *  T  G  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  V  K  G  P  T  S  R  V  V  K  *  R  F  H  *  T  K  C  I  P  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0115P13.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="161837" stop="162496"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDAGSTFSYISSSFATGLKLNCELLDMPIHVSTPVGESVIVEKVYRSCPVTFMESNTYVDLFILEMVDFDVILGMTWLSPNFAILDCNAKIVTLAKPGTDPLVWEGDYTSNPVRIISFLRAKRMVSKGCLAFLAHLRDDTTQVPSIESVSVVREFLDVFPADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKAQLQELLSKGFIRPSASPW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="162609" PGL_stop="161779"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="162609" e_stop="161779"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.900">
            <gDNA_exon_boundary e_start="162609" e_stop="161779" e_length="831"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="162609" stop="161951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="162540" stop="161779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="162540" stop="161880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="162137" stop="161807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAATGCGAGGAAGAGGATACTTATTCTTAACCGTTACCTTATTTAGTTGTCTGTAATCTATGCACATCCTAAAACTCCCATCCTTCTTCTTCACAAATAACACTGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAACCTTTACTTAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCGATGCAGAAGTCAATATCTCTATCCGGTGGCATACCAGGAAGGTCTGCAGGAAACACATCTAAAAACTCACGGACTACCGAAACCGACTCAATTGAAGGTACTTGGGTAGTGTCATCCCTGAGGTGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTCTCTTAGCACGAAGAAAGGAGATGATACGAACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACAATTTTAGCATTACAATCCAATATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAAACAAGTCTACATAAGTATTGCTCTCCATAAAAGTCACAGGACAAGACCTATACACCTTCTCAACTATCACAGACTCACCCACCGGAGTAGAAACATGAATAGGCATGTCAAGCAATTCACAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATATATATGAAAATGTGGATCCAGCGTCAAATAATACAAAATCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCTGAT</gDNA_template>
            <first_frame> S  M  R  G  R  G  Y  L  F  L  T  V  T  L  F  S  C  L  *  S  M  H  I  L  K  L  P  S  F  F  F  T  N  N  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  L  N  N  S  *  S  W  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  M  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  K  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  L  L  A  R  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  I  L  A  L  Q  S  N  I  A  K  F  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  N  K  S  T  *  V  L  L  S  I  K  V  T  G  Q  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  V  E  T  *  I  G  M  S  S  N  S  Q  F  N  L  R  P  V  A  N  E  E  D  I  Y  E  N  V  D  P  A  S  N  N  T  K  S  M  Q  S  Q  T  K  R  L  P  V  M  T  T  S  D </first_frame>
            <second_frame>  Q  C  E  E  E  D  T  Y  S  *  P  L  P  Y  L  V  V  C  N  L  C  T  S  *  N  S  H  P  S  S  S  Q  I  T  L  E  H  P  K  G  M  H  L  V  *  *  N  L  Y  L  T  T  L  E  V  G  P  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  P  V  Q  D  R  C  R  S  Q  Y  L  Y  P  V  A  Y  Q  E  G  L  Q  E  T  H  L  K  T  H  G  L  P  K  P  T  Q  L  K  V  L  G  *  C  H  P  *  G  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  R  R  *  Y  E  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  Q  F  *  H  Y  N  P  I  S  Q  N  S  E  K  A  K  S  Y  P  E  L  H  Q  N  Q  P  F  L  R  *  T  S  L  H  K  Y  C  S  P  *  K  S  Q  D  K  T  Y  T  P  S  Q  L  S  Q  T  H  P  P  E  *  K  H  E  *  A  C  Q  A  I  H  N  L  I  *  D  Q  *  Q  M  R  K  I  Y  M  K  M  W  I  Q  R  Q  I  I  Q  N  P  C  N  H  K  P  K  D  Y  L  *  *  Q  H  L   </second_frame>
            <third_frame>   N  A  R  K  R  I  L  I  L  N  R  Y  L  I  *  L  S  V  I  Y  A  H  P  K  T  P  I  L  L  L  H  K  *  H  W  S  T  P  R  G  C  T  W  S  N  E  T  F  T  *  Q  L  L  K  L  G  L  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  R  F  K  I  D  A  E  V  N  I  S  I  R  W  H  T  R  K  V  C  R  K  H  I  *  K  L  T  D  Y  R  N  R  L  N  *  R  Y  L  G  S  V  I  P  E  V  C  Q  E  S  *  T  P  F  T  N  H  S  L  S  T  K  K  G  D  D  T  N  R  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  R  H  N  F  S  I  T  I  Q  Y  R  K  I  R  R  K  P  S  H  T  Q  N  Y  I  K  I  N  H  F  *  D  K  Q  V  Y  I  S  I  A  L  H  K  S  H  R  T  R  P  I  H  L  L  N  Y  H  R  L  T  H  R  S  R  N  M  N  R  H  V  K  Q  F  T  I  *  F  K  T  S  S  K  *  G  R  Y  I  *  K  C  G  S  S  V  K  *  Y  K  I  H  A  I  T  N  Q  K  I  T  C  D  D  N  I  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0115P13.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="162402" stop="162157"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSMQKSISLSGGIPGRSAGNTSKNSRTTETDSIEGTWVVSSLRCAKKAKHPLLTILLARRKEMIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 483 chains have been computed
$ 
$ memory statistics:
$ 2214888 bytes spliced alignments in total
$ 179 spliced alignments have been stored
$ 12373 bytes was the average size of a spliced alignment
$ 29712 bytes predicted gene locations in total
$ 18 predicted gene locations have been stored
$ 1650 bytes was the average size of a predicted gene location
$ 6 megabytes was the average size of the backtrace matrix
$ 556 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-17 03:12:07
-->
