<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-17 03:12:13"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331496" ref_strand="+" ref_description="SGN-U331496        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | fatty acid multifunctional protein (MFP2), identical to fatty acid multifunctional protein (AtMFP2) GB:AF123254 (gi:4337027) (Arabidopsis thaliana) (fatty acid beta-oxidation); contains Pfam profiles PF02737 (3-hydroxyacyl-CoA dehydrogenase, NAD binding domain), PF00378 (enoyl-CoA hydratase/isomerase family protein), PF00725 (3-hydroxyacyl-CoA dehydrogenase) | chr3:2161875-2166315 FORWARD | Aliases: F3E22.20(evalue: 2e-79, score=292) genbank/nr: gi|34895142|ref|NP_908896.1| putative tetrafunctional protein of glyoxysomal fatty acid beta-oxidation [Oryza sativa (japonica cultivar-group)] gi|15290204|dbj|BAB63893.1| putative tetrafunctional protein of glyoxysomal fatty acid beta-oxidation [Oryza sativa (japonica cultivar-group)] gi|21104813|dbj|BAB93398.1| putative tetrafunctional protein of glyoxysomal fatty acid beta-oxidation [Oryza sativa (japonica cultivar-group)](evalue: 2e-80, score=301)">
      <seq>caatttggaaggacgtgttaaggaaggaagaatgactcaagagcattataaaaaagcgtgcacgcttttaaagggtgttttgagctatgataacttcaaagatgtggatctagtcatagaggacatgcctgacattgtgtccttgaagcagcaattttttgctgatcttgatgaatgttgccctcatcactgcatttttgcttcaactacttgtatagtcaacttagatttgattggagaaaggatgaaaccatgtaaggagattgttgggatccacttttttagctcaccctctgtcactgatctcctggaaattgtccgaacaaagaggacatcccctcaaacgcttgttgatctgttaaactttggaaggaggattcaaaagactcctattgaagttcagaattgtacaggtattgcagtcagacatatgtgcttcccctacttgcaggcagcgatgcttcttgttgaacatggtgctgatgtgtatcagattgataaggcgcttaccagctttgggttgaaactgggtccatttagaatgcttgatcaagatggattcctgtctgcagctgtgcatgatgtgaaattccttgagacttttccagatagatcttacaaatcgaatttgattccaatcatgaggaaaaataacggtgaaggtaaatactcttgccagggcttctacacatactatgacaaggaagaggcaagcccagatcccgaaatatcaaaatatatagaaatggcgagaagtatgtctggtatcaccattagatcatagttggcaacgttgtccgatggagaaattgttgagatgattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10012" stop="6425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9712" g_stop="9592" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9591" i_stop="8657" i_length="935">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8656" g_stop="8493" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="285" r_length="164" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8492" i_stop="8418" i_length="75">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8417" g_stop="8163" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="540" r_length="255" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8162" i_stop="7789" i_length="374">
            <donor d_prob="0.776" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7788" g_stop="7667" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="662" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7666" i_stop="7578" i_length="89">
            <donor d_prob="0.765" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7577" g_stop="7456" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="784" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7455" i_stop="6767" i_length="689">
            <donor d_prob="0.960" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6766" g_stop="6725" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="785" r_stop="826" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-U331496" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U331496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9712" e_stop="9592"/>
          <exon e_start="8656" e_stop="8493"/>
          <exon e_start="8417" e_stop="8163"/>
          <exon e_start="7788" e_stop="7667"/>
          <exon e_start="7577" e_stop="7456"/>
          <exon e_start="6766" e_stop="6725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTGGAAGGACGTGTTAAGGAAGGAAGAATGACTCAAGAGCATTATAAAAAAGCGTGCACGCTTTTAAAGGGTGTTTTGAGCTATGATAACTTCAAAGATGTGGATCTAGTCATAGAGGTAGGTTGTTGTAGGATTTTTGAAAAGCATTACACTGAATCACTTGATCAATTCAAAGATATTCTAGTCTATCCTTTCTTTCTAAGTTGAAGCTACAGTTTTTGCTAGTGTGCTGCTGCGTAACGAGCATATATGTTATTTTTTTGTATGGATTCGTATTCTTGGAGATAGTAATAATCATCAACCGATCAAAAATTTATCCATATCCATGTAAAAGTTTTAATGACCCAAATCCATGTAAAAGTTCAGGGGCTCTTTGATTTGAAAGAGAAGTTCAAAACTTCTCAAGATAGTTTTTGTTACTAACCAGTAACCGCTTCATAGACAAATTTCCAATGGTAAAATATTGAACTTTTATATGCTGGTATGTAATATAAATGTAAAACAGGAAGTTTCTCAGAAGTACTTTGCATAAATATAAATTAATAAATATTTTAAACTGTATTATTCTCATTGATATGGTAGAGAGTAAAAGGCATGCCAGAGAAGTCTCAGATGAGTAATCTATTGAAGTGTTTAACCATCTCATCTAAAAGCTTAAGCTGTTAGCGAGAAGAGCACACTTTTATTATTTAATTATATTCTCAACGCGCCCCCTCACGTGCGGGCTTGATTTTTTTATGGGCCAAGCACGTGGAAAATCGGGTGTTAACTTTGTATTGAGAAGCAGTCTTTTATCCAGTCCTTTCGGGTGTTAACTTTGTGTTAATCTTTATCTAGTAGTCATGTTAATGTTTTATCATGAAAATGGCCGTTCCAAGAGTATCTATCATGAGTCACGAAAGGCTGAAACAGAAGAGTTGTATAGATACACAAGACTGAGTAGAAAATGGAACCTACATGTTTGTTGCAGATTACTTGTAGAAATGACAATGATACTTATCAGATTGACTCAGATGCAGACTTCTCATTTGTTTCTTCTTCTTGATTAATAGGACATGCCTGACATTGTGTCCTTGAAGCAGCAATTTTTTGCTGATCTTGATGAATGTTGCCCTCATCACTGCATTTTTGCTTCAACTACTTGTATAGTCAACTTAGATTTGATTGGAGAAAGGATGAAACCATGTAGGGAGATTGTTGGGATCCACTTTTTTAGGTAAAGGTGAATCAAGCAAGCGTAGTATATCTGCTGATACATATGAGTTAAGGCTTGCTTGTTACTTGGCTGCAGCTCACCCTCTGTCACTGATCTCCTGGAAATTGTCCGAACAAAGAGGACATCCCCTCAAACGCTTGTTGATCTGTTAAACTTTGGAAGGAGGATTCAAAAGACTCCTATTGTAGTTCAGAATTGTACAGGTTTTGCAGTCAGACATATGTGCTTCCCCTACTTGCAGGCAGCGATGCTTCTTGTTGAACATGGTGCTGATGTGTATCAGATTGATAAGGCGCTTACCAGCTTTGGGTTGAAACTGGGTCCATTTAGGTGCATATTCCATTTAACATCCTATGAATGTGAAATCGATTTGATCGAGTTGTGCTCTTCAATAGAACCCTCAGTTTCTCCATACAGTCGAACTCATAATAAAAGAAATATGAGTTTCCTTATGGTTTAACATAAAGCTACCAAAATGTTCCAGCACTAATGGATGTTGATTCAAAATCTGATCATACAGAAGGAGAAGCTTATTCATTTAAATACTAAATAAAGGTTATATGACACACATTTCTCATGTGGATAATCCACCAATGATGAATGTGATCTTCAGCATTTTTTTTATATCGCTCCACTTGGAGTGCAAGACATCTTCTGTCGTTGCTTCCATTTCTTTTGGTTGATGTTGGCAATGTCAACTGCAGAATGCTTGATCAAGATGGATTCCTGTCTGCAGCTGTGCATGATGTGAAATTCCTTGAGACTTTTCCAGATAGATCTTACAAATCGAATTTGATTCCAATCATGAGGAAAAATAACGGTGAAGGTAATGTGCACTTCCTTCTTGTCATCAGGACCTGAATTGTTTTTGTCATCAGATTTTCTTGAATTTCTCACAAATGGAATGTGTACTAGGTAAATACTCTTGCCAGGGCTTCTACACATACAATGACAAGGAAGAGGCAAGCCCAGATCCCGAAATATCAAAATATATAGAAATGGCGAGAAGTATGTCTGGTATCACCATTAGATCAAAGGTCTTCTCTCTCTCTCTCTCTGTCTCTCAGTTAACTGTCTTTTGGTCCTTCTATTGAAAGTTCTCTAGTAATCTTCCGACTGCACTTATCTTGAAGAAAGTATGAGGCTTATTGCTATGTACTATTTGGCTTTGGGAAAAAATAGAAAACATAAATAATGTTCATGATATAACCATAAAGCGGAACACCAAGATATGGTAATCAACAAGAATATAAAAAGAACGATAATGACACTAAGACTATTTATCGTTCAGTTAATTCTCAAAATGGCATGACTTTTGAGAAGGGAAGTGTCTTTTGATGTTTGTTTTTGTAATCATATACAGGATTCTTAATTTGTACAAAGAAAACAAAAAGAAGAGTAACTAGATAAACTGATCATTCTAATGTAAGAGACGTGCACATCACCGGGCTTATGTCCCCTCTTTATATAGGCAAATAGATTCTTCCTCTAATTGGTCACTTGCAAACAGTTCAACCTGTGTTTATTTGTTGTCTATCCGTTCTTTCATGATTGTAGATTTTGATAAATGATTCAGATTGTTTGAATGCCAAATTGTAGTTGGAATGAATATAATGCATTTACCAATCATTTGAACAAAATAAATTTTTGGAAAGGTCTTTGAATGTTTCCTTTCTATCTATCAATTTATGACTTGGTGCACGTCTGAACAATCAACTTGGTACAGTTGGCAACGTTGTCCGATGGAGAAATTGTTGAGATGATTCTT</genome_strand>
        <mrna_strand>CAATTTGGAAGGACGTGTTAAGGAAGGAAGAATGACTCAAGAGCATTATAAAAAAGCGTGCACGCTTTTAAAGGGTGTTTTGAGCTATGATAACTTCAAAGATGTGGATCTAGTCATAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATGCCTGACATTGTGTCCTTGAAGCAGCAATTTTTTGCTGATCTTGATGAATGTTGCCCTCATCACTGCATTTTTGCTTCAACTACTTGTATAGTCAACTTAGATTTGATTGGAGAAAGGATGAAACCATGTAAGGAGATTGTTGGGATCCACTTTTTTAG...........................................................................CTCACCCTCTGTCACTGATCTCCTGGAAATTGTCCGAACAAAGAGGACATCCCCTCAAACGCTTGTTGATCTGTTAAACTTTGGAAGGAGGATTCAAAAGACTCCTATTGAAGTTCAGAATTGTACAGGTATTGCAGTCAGACATATGTGCTTCCCCTACTTGCAGGCAGCGATGCTTCTTGTTGAACATGGTGCTGATGTGTATCAGATTGATAAGGCGCTTACCAGCTTTGGGTTGAAACTGGGTCCATTTAG......................................................................................................................................................................................................................................................................................................................................................................................AATGCTTGATCAAGATGGATTCCTGTCTGCAGCTGTGCATGATGTGAAATTCCTTGAGACTTTTCCAGATAGATCTTACAAATCGAATTTGATTCCAATCATGAGGAAAAATAACGGTGAAG.........................................................................................GTAAATACTCTTGCCAGGGCTTCTACACATACTATGACAAGGAAGAGGCAAGCCCAGATCCCGAAATATCAAAATATATAGAAATGGCGAGAAGTATGTCTGGTATCACCATTAGATCATAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCAACGTTGTCCGATGGAGAAATTGTTGAGATGATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323937" ref_strand="+" ref_description="SGN-U323937        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: AT4G02340.1 | Symbol: None | epoxide hydrolase, putative, similar to epoxide hydrolases from Glycine max GI:2764806, Solanum tuberosum GI:407938; contains Pfam profile PF00561: hydrolase, alpha/beta fold family | chr4:1035683-1037615 FORWARD | Aliases: T14P8.15, T14P8_15 (evalue: 5e-126, score=447) genbank/nr: gi|18411917|ref|NP_567228.1| epoxide hydrolase, putative [Arabidopsis thaliana] gi|7435060|pir||T01316 epoxide hydrolase homolog T14P8.15 - Arabidopsis thaliana gi|3193297|gb|AAC19281.1| similar to epoxide hydrolases [Arabidopsis thaliana] gi|7268994|emb|CAB80727.1| AT4g02340 [Arabidopsis thaliana] gi|20856515|gb|AAM26670.1| AT4g02340/T14P8_15 [Arabidopsis thaliana] gi|23308303|gb|AAN18121.1| At4g02340/T14P8_15 [Arabidopsis thaliana](evalue: 4e-124, score=447)">
      <seq>aaaaatctcactgtaaacggcataaatatgcacatagctgaaattggtgaaggcccatcaacaatactattccttcatggtttccctgaactctggtattcatggcgtcaccaactgatttcactttcatccaaaggttaccgcgcaatagcaccagatctacgtggttatggcgatacagattctcccccttctccttctagctataccgtttttcatattgttggtgaccttattgcccttctagatgctctgggtctcgatcaggtgttccttgttggacatgattggggtgctgttatagcttggcatgtatgccttttgcgacctgataggatcaaagcactggttaatatgagcgttgtcttccaccccaggaaccccaagagaaagcctattgaatctatgcgtgctgtcctcggggatgattactatatttgcagatttcaggaatatggagaggcagaagaggagtttgctcgtgttgataccgctagactaatcgcgaaatttttaacatcacgcaatccagctcctcttcgtgtgcctaaagagaaaggatttgggggttcaccacatactcccattacattgccatcttggttgtcagaagaggatgtcaactactatgccaacaagttcagacagtcaggttttactggtggattaaactactatcgagctatggacctaaactgggagctgaccgcgccatggaccggtgtacaaattaaggtccctgttaagttcatcgtaggggatgtggacctaacttacaatacacctggtgttaaggaatatatccacaaaggtggtttccaaaaagtggtgccattcttgcaagaagtagttatcatggaaggagttgcacacttcatcaaccaagaaagaccagaagaaattaatgaccacatatatgacttttttcaaaagttctaaggtgtctgtaattttaactttttatcatggattgctttgttgctttgaatcttttttcaagtctttttatgtgtgtgggataaagggcacatggtctatcggaaatagcctctctatcccaaaaggtagagataggtttgcattaccatcctcataccccacttgtgaattacactagatatgttgttattagaatataagaccagtttatgtatcttaaaacttcaaagcttttactaaagaattcagcttttctggactatttttaatttggtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25356" stop="30630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25656" g_stop="25922" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25923" i_stop="27186" i_length="1264">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27187" g_stop="27369" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="450" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27370" i_stop="28933" i_length="1564">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28934" g_stop="29175" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="692" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29176" i_stop="29806" i_length="631">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29807" g_stop="30344" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="693" r_stop="1230" r_length="538" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-U323937" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1230</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U323937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25656" e_stop="25922"/>
          <exon e_start="27187" e_stop="27369"/>
          <exon e_start="28934" e_stop="29175"/>
          <exon e_start="29807" e_stop="30344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATCTCACTGTAAACGGCATAAATATGCACATAGCTGAAATTGGTGAAGGCCCATCAACAATACTATTCCTTCATGGTTTCCCTGAACTCTGGTATTCATGGCGTCACCAACTGATTTCACTTTCATCCAAAGGTTACCGCGCAATAGCACCAGATCTACGTGGTTATGGCGATACAGATTCTCCCCCTTCTCCTTCTAGCTATACCGTTTTTCATATTGTTGGTGACCTTATTGCCCTTCTAGATGCTCTGGGTCTCGATCAGGTTTGAGGCGAATCTAGAGTTTAAATTTCTAATATATTTGATAGTGAGTTTACGAAGTTAGTGATATGTATATTTGAGTAATTACAGGGAAATATAGGATTTAGTGAAAGTTAGTGTACTACTTAGTTCTCGTTAAGCAATAGAAACTTGAAGTTTGAGTTTTTGATGTTGTGATTTTTTGAACATGTATTTAAATGTAGTACACTTCATTCTACATGACGTCCTACATGTATCCTGTCACATGGAACATAGAACATGTATATGTATGTGTGTTCGTTCAATTTTATACAAGTTTAAGTGTTTACTCCTGTGATTCCAAAGTTGGAGGACATAGACATCACTTGAGACCAAGTTAAATGTCATATTTATGTACCATGTCTAAAAATAAGGTTCCCCTTTAGTAGAGTTCTGTATATCTAAGTGTATAGTATAGTTCGAGTAATTACAGGACGATCTAGGATTTACATACTGTGGTGCACAAGTCAACTAATTATATATGGAGGACACATCAATTAATGGATGTACTGTATGGATGATTTTGTATTTTTTGTTTTAACTTTTTTATGTAATAGGAAGTTAACCTTTTATAGTAGGTTAGCCAGCATTTTTTCTAGGTTATTAATTGATGTTTATTATTGCTTATCACTCTGAAAAAAAATGCTTATTCCATTTCTTTGATGAACACAAACTTTTTCACAGATTCTGCTTTCACATTTGCTTGAGCGTCAAATACCCTGGATATAATTCATCTTCAAATATGATTCTGTCTATTTGCCACCTAAAGTGAGTGTTTTGTGGCGTTGTAGAAATGATTGTACAGGAAGGAACTAGATACATTAGAGAGAGAAAAAAGATGATAATGATAAATTATTAAAGTTAGGGTATAAGCAGGGGCTTCTAGCGGGGTGGCTTTTCTAGATGTTCCAGATTTAAGCCTCCAACTCTATGTTATAGCCTTCAGGAGTCACATAGGCGCTCCTACCAAGTAGAATAGTTATGATATTTCCATCAAGATCAAAGTCTAAGAAGACATTATGTTGAACGATTCGCACCGACTTGACTGGCATGATAGATGGATTGGTAGTTTCTGTTATTTTCAGTTAGGACCTTGTCTCCTTTTTTATCTTCCACTCTCTTTGTAATTTGCCCGTAATTATGTTAATACTTGACCTGATTGTATAATGATTAGTGCATAGTTGGAGTTCCAAACAGTGGTTGCACATGCATTTTTTATATAAATATTTTATTTGCCTCTTTGAATTAGGTGTTCCTTGTTGGACATGATTGGGGTGCTGTTATAGCTTGGCATGTATGCCTTTTGCGACCTGATAGGATCAAAGCACTGGTTAATATGAGCGTTGTCTTCCACCCCAGGAACCCCAAGAGAAAGCCTATTGAATCTATGCGTGCTGTCCTCGGGGATGATTACTATATTTGCAGATTTCAGGTTTCTTGCAGCATCCTTCTCTCCTTTGTTTTTCTTCTATCAACTGTTACATTATTTTCCGTTAGCTCCATTAATTTCAGCTTGGATAAAGGAGGGGATGTTAAGTTGACCGGAGACTCGAAATAGTCTAATGGAGGAAAATATATGTAGTTCATTCACATAGGGGACCTCAATTAAAAATTGTCTGAAAAAGTTTAAGCTAGTGTTTGACCAGAGATTTTGGGAGTAGCTATTAAAAAAATTATCTTTAAATATCTGACCGTGAAAATGTGATCTTCATATATTTTCTAGTTTTGGGACTTCCACTTATATACTTATAAAAATTCAAGTAATATGCATGTTCAAATATAACTTCAATTTTCAAAATCACAACTTCGAAAATTCAAATTTTCAAGTTTCAACTTCAAAAACAGGAGCTAAGGATTCATATAGCTGCCTGCAACTAATTACGGATTGAAGAGATTTTTTTATGATCTTCCTTACTGCATGCACTTACGGATAAAGTGAAGATTTTGGTGATATCATTGCTTCCAATTATTTTATGTCAAATAACTTTTGTGGAAATTCAATGTTCGAATTGTTTTGAGTGCTCATATAGGTTCTGCTATTCTGGGACTTCAAATATGTGATATCTGGCATAAGGTTTCTGAATTTGCTGTCTGCCTTTCGTAAGCTATGTTATTACTCCTTCGGTTTCAATTTGTTTGTATAGTATTGACTTGATATGAAGTTTAAGAAAGTATGGAAGACTTTTAAATTTTGTGGTCTTAAACTAAAGATATTAGAATGTACCAAAATGTTCTTTAATCTTGTGGTGTTAAATATGTCATTTGGAAAATTGGAATTAAAGAGTTGCCTAGAAGGAAGGAAGCATTGTTTTTTTAAACGAACTGAAAAAGGAAAGTAAGAGTCCATGCTTATGATTATTGTCCAGAAGTAGCTGTTGATGCAATTTTCCACTGCACTGCGCACAAAATTTAAGCATTGTTCTGGTCAAGACGTAAAAGACACTCATCTTACTCTGTTTCTTGAATTGTAACTTAGGATCCACACCATGATAAAATACTATCCTCATGATTAGACCGAGTCCCTTTAGATTTTATAAAGTACTCATTAGTGTCCCCATTCTCACCATTCAGCTTTGTTCTAAAAATTTGTTAAATATTTTTTCAATTACTATGCTATCGTGATTTTGATTGCTTAATCCAAGTAAAGTATTTTCTTTTTTTGTATGCTTATATAGGAAACTGAGGAGAACAGAAACTTTTTTCACTTGTATTTGTGTAAAAAGAACATGCTATTTGCATAGGTAGTTCGCAAATTTTTTGGGAAGCTCTGTGTTAAGAACTTATACTTCTTTAGCACCATCTTGTTATATAGAATTTTTATGACCTTTTGATTTATCATTTGAAGAAAAGGGTCTTATGTTAGAGTTAAATCATAAAAACAAAAGAAAAACCTAGCTGTTACAAATTTGATGAATTCCGGTGGTTCTCCCTCATCGCTGAAGACGTTATTTAATCATCGCTGCTGAAATCACCCTTTCAAATGTGTTGTTTCTTAGGAATATGGAGAGGCAGAAGAGGAGTTTGCTCGTGTTGATACCGCTAGACTAATCGCGAAATTTTTAACATCACGCAATCCAGCTCCTCTTCGTGTGCCTAAAGAGAAAGGATTTGGGGGTTCACCACATACTCCCATTACATTGCCATCTTGGTTGTCAGAAGAGGATGTCAACTACTATGCCAACAAGTTCAGACAGTCAGGTTTTACTGGTGGATTAAACTACTATCGAGCTATGGACCTGTGAGTTGCCTAATCATTTTTTTAACCAAATGACCTATTTGTTCAAGAACTCTTAATTTTATTTTTTGCTCAAATTTTTTGTGGTATTGTTTCTAAATGAGAACTATGAATGGTTCGGGGTAAAATTTATTAACTGAGAACTAATCCTCGTCGTCTTGGTAAATAACTCAACATTTAACCAAGTGCAACATTTAACCTTTTTGTAGCATGAGTGTTAACAAACAATAGCAGACAATATTATGCTGATTTTAGAATATATATACATTAAATACCTAGTTTTATGAAGAGATCACGGGTTCACAGGCCCCATATTTTCGCCTATAAATTCACCCGGGATATCATGGATCAACCTAATAGTTTTATGTTCTGATACCTGCTTATAAGCAAATGTTACTTTACGAAGCTGATGCAACCTAATATACTCACTTCAACTGAACCCGGTATCTTCAACATGCAACATAGAGATACATGTGTATAAGAGACTAACCAACCTCATATTTATCATAGGATTGTTATCTTTTATCCCATCAAACAAACAACCCCGTAAGTCTTTTATGTATACAATTATATACAATGCATGATAGCTGTTTGTGTGGCCATTTTATTATTGTTTTATTTTTAAATGTTTCAGAAACTGGGAGCTGACCGCGCCATGGACCGGTGTACAAATTAAGGTCCCTGTTAAGTTCATCGTAGGGGATGTGGACCTAACTTACAATACACCTGGTGTTAAGGAATATATCCACAAAGGTGGTTTCCAAAAAGTGGTGCCATTCTTGCAAGAAGTAGTTATCATGGAAGGAGTTGCACACTTCATCAACCAAGAAAGACCAGAAGAAATTAATGACCACATATATGACTTTTTTCAAAAGTTCTAAGGTGTCTGTAATTTTAACTTTTTATCATGGATTGCTTTGTTGCTTTGAATCTTTTTTCAAGTCTTTTTATGTGTGTGGGATAAAGGGCACATGGTCTATCGGAAATAGCCTCTCTATCCCAAAAGGTAGAGATAGGTTTGCATTACCATCCTCATACCCCACTTGTGAATTACACTAGATATGTTGTTATTAGAATATAAGACCAGTTTATGTATCTTAAAACTTCAAAGCTTTTACTAAAGAATTCAGCTTTTCTGGACTATTTTTAATTTGGTAACTATGGACAGAATC</genome_strand>
        <mrna_strand>AAAAATCTCACTGTAAACGGCATAAATATGCACATAGCTGAAATTGGTGAAGGCCCATCAACAATACTATTCCTTCATGGTTTCCCTGAACTCTGGTATTCATGGCGTCACCAACTGATTTCACTTTCATCCAAAGGTTACCGCGCAATAGCACCAGATCTACGTGGTTATGGCGATACAGATTCTCCCCCTTCTCCTTCTAGCTATACCGTTTTTCATATTGTTGGTGACCTTATTGCCCTTCTAGATGCTCTGGGTCTCGATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCCTTGTTGGACATGATTGGGGTGCTGTTATAGCTTGGCATGTATGCCTTTTGCGACCTGATAGGATCAAAGCACTGGTTAATATGAGCGTTGTCTTCCACCCCAGGAACCCCAAGAGAAAGCCTATTGAATCTATGCGTGCTGTCCTCGGGGATGATTACTATATTTGCAGATTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATGGAGAGGCAGAAGAGGAGTTTGCTCGTGTTGATACCGCTAGACTAATCGCGAAATTTTTAACATCACGCAATCCAGCTCCTCTTCGTGTGCCTAAAGAGAAAGGATTTGGGGGTTCACCACATACTCCCATTACATTGCCATCTTGGTTGTCAGAAGAGGATGTCAACTACTATGCCAACAAGTTCAGACAGTCAGGTTTTACTGGTGGATTAAACTACTATCGAGCTATGGACCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTGGGAGCTGACCGCGCCATGGACCGGTGTACAAATTAAGGTCCCTGTTAAGTTCATCGTAGGGGATGTGGACCTAACTTACAATACACCTGGTGTTAAGGAATATATCCACAAAGGTGGTTTCCAAAAAGTGGTGCCATTCTTGCAAGAAGTAGTTATCATGGAAGGAGTTGCACACTTCATCAACCAAGAAAGACCAGAAGAAATTAATGACCACATATATGACTTTTTTCAAAAGTTCTAAGGTGTCTGTAATTTTAACTTTTTATCATGGATTGCTTTGTTGCTTTGAATCTTTTTTCAAGTCTTTTTATGTGTGTGGGATAAAGGGCACATGGTCTATCGGAAATAGCCTCTCTATCCCAAAAGGTAGAGATAGGTTTGCATTACCATCCTCATACCCCACTTGTGAATTACACTAGATATGTTGTTATTAGAATATAAGACCAGTTTATGTATCTTAAAACTTCAAAGCTTTTACTAAAGAATTCAGCTTTTCTGGACTATTTTTAATTTGGTAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U334577" ref_strand="+" ref_description="SGN-U334577        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT1G09140.2 | Symbol: None | similar to pre-mRNA splicing factor SF2 (SF2) / SR1 protein [Arabidopsis thaliana] (TAIR:At1g02840.1); similar to pre-mRNA splicing factor SF2 (SF2) / SR1 protein [Arabidopsis thaliana] (TAIR:At1g02840.3); similar to ASF/SF2-like pre-mRNA splicing factor SRP32 [Zea mays] (GB:AAU29328.1); contains InterPro domain RNA-binding region RNP-1  (RNA recognition motif) (InterPro:IPR000504) | chr1:2942566-2945961 REVERSE | Aliases: None (evalue: 2e-07, score=53.1) genbank/nr: Pre-mRNA(evalue: 2e-08, score=62.4)">
      <seq>accaactatgacgacatgaaatatgctataaaaaaacttgatgaatctgagtttcggaatgctttttctcgttcaacaattcgggtgaaggaacatgattctagaagccgcagccgcagccgttcttactcgagaggaaagagtggtagccgtagccgcagtcgaagttacagtcgcagccggagcagaagcaaatctcctaaagctaagtcgtcaaagcgtacaagatctcgttctagatctgtctcttctcagccccgttctgggttaaaaggacgctctttgtcaaggtaatctttcttactggtcatatctacccattttgttgttggggcaggttatgtaaaagtagcatatagtacaaggttaatgtatatttttatgcaagtccttgtactggtctttttttgagtcaaaagtccttgtgtctatcagtttatcttaatcattttaatcttttctttgtgaaagccacctgggaattaactgttgcatcttgcacctcatttatttagtgggaaatcagctgagcactttgtttccaacccttaatcttgactagactttgtatagttgtggacatgagatggctttgaagcaaaaagttgttttgcagtgtgaccaatttaacattttcacacaagttgggttgtaaatttcacaaattcaaattgcaaattgcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34731" stop="33134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34431" g_stop="34405" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34404" i_stop="34293" i_length="112">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34292" g_stop="34236" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="84" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34235" i_stop="34122" i_length="114">
            <donor d_prob="0.870" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34121" g_stop="34015" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="191" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34014" i_stop="33927" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.429" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33926" g_stop="33434" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="685" r_length="494" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-U334577" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U334577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34431" e_stop="34405"/>
          <exon e_start="34292" e_stop="34236"/>
          <exon e_start="34121" e_stop="34015"/>
          <exon e_start="33926" e_stop="33434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAACTATGACGACATGAAATATGCTGTAAGCTATCTCCTGTTTCTTATTCTGTATAATTATCCTCAATTTTTGTTCAAGATATTTGAAATATGTTTATGCTCGACTAACGAGTGTAATTAATTTTCCTTGTATGTAGATAAAAAAACTTGATGAATCTGAGTTTCGGAATGCTTTTTCTCGTTCAACAATTCGGGTATGATGTGATTATAACTCAAATGATATGATTGCAGGATGCTTAGTGCCTTTTCTTTTGTTAGCCTATACCATTGTCTTATGCTTCATAAAAATATTGCTTTGTCTTATGTAGGTGAAGGAACATGATTCTAGAAGCCGCAGCCGCAGCCGTTCTTACTCGAGAGGAAAGAGTGGTAGCCGTAGCCGCAGTCGAAGTTACAGTCGCAGCCGGAGCAGAAGGTATGTATTATGTAGTTTGCACGTTTTATAGCTTGTTACTTCACCTTTGAATGCTACTATGTATCTCATTGCTGCTCTTTCCTAGCAGCAAATCTCCTAAAGCTAAGTCGTCAAAGCGTACAAGATCTCGTTCTAGATCTGTCTCTTCTCAGCCCCGTTCTGGGTTAAAAGGACGCTCTTTGTCAAGGTAATCTTTCTTACTGGTCATATCTACCCATTTTGTTGTTGGGGCAGGTTATGTAAAAGTAGCATATAGTACAAGGTTAATGTATATTTTTATGCAAGTCCTTGTACTGGTCTTTTTTTGAGTCAAAAGTCCTTGTGTCTATCAGTTTATCTTAATCATTTTAATCTTTTCTTTGTGAAAGCCACCTGGGAATTAACTGTTGCATCTTGCACCTCATTTATTTAGTGGGAAATCAGCTGAGCACTTTGTTTCCAACCCTTAATCTTGACTAGACTTTGTATAGTTGTGGACATGAGATGGCTTTGAAGCAAAAAGTTGTTTTGCAGTGTGACCAATTTAACATTTTCACACAAGTT-GGTTGTAAATTTCACAAATTCAAATTGCAAATTGCATC</genome_strand>
        <mrna_strand>ACCAACTATGACGACATGAAATATGCT................................................................................................................ATAAAAAAACTTGATGAATCTGAGTTTCGGAATGCTTTTTCTCGTTCAACAATTCGG..................................................................................................................GTGAAGGAACATGATTCTAGAAGCCGCAGCCGCAGCCGTTCTTACTCGAGAGGAAAGAGTGGTAGCCGTAGCCGCAGTCGAAGTTACAGTCGCAGCCGGAGCAGAAG........................................................................................CAAATCTCCTAAAGCTAAGTCGTCAAAGCGTACAAGATCTCGTTCTAGATCTGTCTCTTCTCAGCCCCGTTCTGGGTTAAAAGGACGCTCTTTGTCAAGGTAATCTTTCTTACTGGTCATATCTACCCATTTTGTTGTTGGGGCAGGTTATGTAAAAGTAGCATATAGTACAAGGTTAATGTATATTTTTATGCAAGTCCTTGTACTGGTCTTTTTTTGAGTCAAAAGTCCTTGTGTCTATCAGTTTATCTTAATCATTTTAATCTTTTCTTTGTGAAAGCCACCTGGGAATTAACTGTTGCATCTTGCACCTCATTTATTTAGTGGGAAATCAGCTGAGCACTTTGTTTCCAACCCTTAATCTTGACTAGACTTTGTATAGTTGTGGACATGAGATGGCTTTGAAGCAAAAAGTTGTTTTGCAGTGTGACCAATTTAACATTTTCACACAAGTTGGGTTGTAAATTTCACAAATTCAAATTGCAAATTGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U334576" ref_strand="+" ref_description="SGN-U334576        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: RNA-binding(evalue: 5e-05, score=51.6)">
      <seq>ccaactatgacgacatgaaatagggtataataaaacttgatgaatctgagttcccgaatgctttttctcgttcaacaattcgggtgaaggaacatgattctagaagccgcagccgcagccgttcttactcgagaggaaagagtggtagccgtagccgcagtcgaagttacagtcgcagccggagcagaagcaaatctcctaaagctaagtcgccaaagcgtacaagatctcgttctagatctgtctcttctcagccccgttctgggttaaaaggacgctctttgtcaaggtaatctttattactggtcatatctacccattttgttgaaggggcaggttatgtaaaagtagcatatagtacaaggttaatgtatatttttatgcaagtccttgtactggtctttttttgagtcaaaagtccttgtgtctatcagtttatcttaatcattttaatcttttctttgtgaaagccacctgggaattaactgttgcatcttgcacctcatatatttagtgggaaatcacctgagcactttgtttccaacccttaatcttgactaaactttgtataggtgtggacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34730" stop="33234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34430" g_stop="34405" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34404" i_stop="34293" i_length="112">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.959" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34292" g_stop="34236" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="83" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34235" i_stop="34122" i_length="114">
            <donor d_prob="0.870" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34121" g_stop="34015" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="190" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34014" i_stop="33927" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.429" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33926" g_stop="33534" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="583" r_length="393" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-U334576" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U334576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34430" e_stop="34405"/>
          <exon e_start="34292" e_stop="34236"/>
          <exon e_start="34121" e_stop="34015"/>
          <exon e_start="33926" e_stop="33534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACTATGACGACATGAAATATGCTGTAAGCTATCTCCTGTTTCTTATTCTGTATAATTATCCTCAATTTTTGTTCAAGATATTTGAAATATGTTTATGCTCGACTAACGAGTGTAATTAATTTTCCTTGTATGTAGATAAAAAAACTTGATGAATCTGAGTTTCGGAATGCTTTTTCTCGTTCAACAATTCGGGTATGATGTGATTATAACTCAAATGATATGATTGCAGGATGCTTAGTGCCTTTTCTTTTGTTAGCCTATACCATTGTCTTATGCTTCATAAAAATATTGCTTTGTCTTATGTAGGTGAAGGAACATGATTCTAGAAGCCGCAGCCGCAGCCGTTCTTACTCGAGAGGAAAGAGTGGTAGCCGTAGCCGCAGTCGAAGTTACAGTCGCAGCCGGAGCAGAAGGTATGTATTATGTAGTTTGCACGTTTTATAGCTTGTTACTTCACCTTTGAATGCTACTATGTATCTCATTGCTGCTCTTTCCTAGCAGCAAATCTCCTAAAGCTAAGTCGTCAAAGCGTACAAGATCTCGTTCTAGATCTGTCTCTTCTCAGCCCCGTTCTGGGTTAAAAGGACGCTCTTTGTCAAGGTAATCTTTCTTACTGGTCATATCTACCCATTTTGTTGTTGGGGCAGGTTATGTAAAAGTAGCATATAGTACAAGGTTAATGTATATTTTTATGCAAGTCCTTGTACTGGTCTTTTTTTGAGTCAAAAGTCCTTGTGTCTATCAGTTTATCTTAATCATTTTAATCTTTTCTTTGTGAAAGCCACCTGGGAATTAACTGTTGCATCTTGCACCTCATTTATTTAGTGGGAAATCAGCTGAGCACTTTGTTTCCAACCCTTAATCTTGACTAGACTTTGTATAGTTGTGGACATG</genome_strand>
        <mrna_strand>CCAACTATGACGACATGAAATAGGGT................................................................................................................ATAATAAAACTTGATGAATCTGAGTTCCCGAATGCTTTTTCTCGTTCAACAATTCGG..................................................................................................................GTGAAGGAACATGATTCTAGAAGCCGCAGCCGCAGCCGTTCTTACTCGAGAGGAAAGAGTGGTAGCCGTAGCCGCAGTCGAAGTTACAGTCGCAGCCGGAGCAGAAG........................................................................................CAAATCTCCTAAAGCTAAGTCGCCAAAGCGTACAAGATCTCGTTCTAGATCTGTCTCTTCTCAGCCCCGTTCTGGGTTAAAAGGACGCTCTTTGTCAAGGTAATCTTTATTACTGGTCATATCTACCCATTTTGTTGAAGGGGCAGGTTATGTAAAAGTAGCATATAGTACAAGGTTAATGTATATTTTTATGCAAGTCCTTGTACTGGTCTTTTTTTGAGTCAAAAGTCCTTGTGTCTATCAGTTTATCTTAATCATTTTAATCTTTTCTTTGTGAAAGCCACCTGGGAATTAACTGTTGCATCTTGCACCTCATATATTTAGTGGGAAATCACCTGAGCACTTTGTTTCCAACCCTTAATCTTGACTAAACTTTGTATAGGTGTGGACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318232" ref_strand="+" ref_description="SGN-U318232        Tomato 200607 #1 [17 ESTs aligned] arabidopsis/peptide: | Symbol: None | pectinesterase family protein, contains Pfam profile: PF01095 pectinesterase | chr4:1022725-1026118 REVERSE | Aliases: T14P8.1, T14P8_1(evalue: 6e-143, score=504) genbank/nr: gi|50939939|ref|XP_479497.1| putative pectinesterase [Oryza sativa (japonica cultivar-group)] >gi|50509816|dbj|BAD31979.1| putative pectinesterase [Oryza sativa (japonica cultivar-group)] >gi|34393863|dbj|BAC83543.1| putative pectinesterase [Oryza sativa (japonica cultivar-group)] (evalue: 2e-158, score=562)">
      <seq>tactactcatttccaccacaaagttcccaaaatgtatatccaaaaagagaaaccttcactttctcttgctctttcattcattttcttgctcacattcttctttcccccaaaatcattattagtatcaagtactcaacaaattcatgttcacaaaaacatccaaattgcaaattcacattgccaagacacactttaccctaagctttgcatttccactctttcattaatcccaaatcttcataaaaaatcaattccagaaatcatatcttccaatgtcaatgtcacaatgaatgaagtcaaatcctctgctgaaaattgctctaacatacttcaccatatgtccaaattggaccctattgagaaaagggcattagatgattgtattgaacttttaggtgatacaactattgatgagttacaaacaactcttaatgatctttctactaaaaatagtagtaattcacctttaaagcactataatgatctacaaacacttcttagtggtgcaatgacaaatcaagatacttgtcttgaaggaattcacaaaagtaaacacaaattgagtcaatacattgagaagaacttgcatacaatatctcatcatatgagcaactctcttgccatgcttaagaagttaaagacagggtcgtctcaagggtcgtcatcaaactctaatgaagtcttccccgagtacggcaccatgaagaatgggtacccaaaatggttgcaaaaaaaggaccggacccttttacaagctccgttgaaccaaattaagttcaatttggttgtggctaaagatggtagtggtaattttactactattaatgcagcgttaagtgctgcaccaaattcttctagtacaagatttgtgatttacatcaaggcgggaacgtatttcgaatatattgacgtagaaagaaagaaaagtatgataatgttcatcggagatgggatcggaaaaacagtaataaagggtaatcggaacgtcgtagatggatggactactttccgatcagctaccgttgctgtggtgggaaatggattcttagctagaggcattacgtttgagaactatgccggaccaagcaagcaccaagcggtggcgctgcggagcggctccgacctatcggcgttctaccaatgtagctttattgcctatcaagacaccctctacgtccactcacttcgacaattctatcgcgattgcgatgtctatgggacggttgacttcatttttggtaatgcagctgttgttctccagaattgtaacttgtatgctcgtaaacctaacccgaatcagaagaacatgttcacggcacaaggaagagaagatccaaatcaaaacactggaatttcaatcttgaattgtaaagtggaagctgcatcggatttagttcctgttgtatcgtcattcaaaaattacttaggacgaccatggaaacaatattcaagaactgtaattctcatatccaatattggaagcttaattgatcctgctggttggttagaatggagtggtgattttgcattgaacacactttattatggagagtatttgaaccggggacccggttcaaatactagtgctagagtaaaatggcccggttatcgggtcattaatagctctagtgaggccagtcaattcactgttggaaattttattcaagggagtgagtggatacctgctaccggggtgccattttattctggtttgacttcctcttgaatacattattttaaatcagcgaccgctgagggtttatcttatagggtatttattaatataatttttatcaaaaatatcaacaacttatggggtatttattaatatatataccttggagataacaaccacaatagttactagtctggttcattgcttgcatatgttcatgtgttaagatttttcttagcatatgttgttttagcttgttttcctattgagaatatatatatatatatatatatatatattataatatttctttttgtgagaaatttgatgtcagagcttcatttcttgaggaattgttaatgtcaatgaatgtagtgccaatataagtttgatctttatcatgaataaattttgaatgtatttatttatataaaaaaaaaaaaaaaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49576" stop="56033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49876" g_stop="50532" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="657" r_length="657" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50533" i_stop="51411" i_length="879">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51412" g_stop="51779" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="1025" r_length="368" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51780" i_stop="54160" i_length="2381">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54161" g_stop="54373" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1026" r_stop="1238" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54374" i_stop="54858" i_length="485">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54859" g_stop="55728" g_length="870"/>
          <reference_exon_boundary r_type="cDNA" r_start="1239" r_stop="2108" r_length="870" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2109" polyA_stop="2125"/>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-U318232" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2108</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U318232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49876" e_stop="50532"/>
          <exon e_start="51412" e_stop="51779"/>
          <exon e_start="54161" e_stop="54373"/>
          <exon e_start="54859" e_stop="55728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTACTCATTTCCACCACAAAGTTCCCAAAATGTATATCCAAAAAGAGAAACCTTCACTTTCTCTTGCTCTTTCATTCATTTTCTTGCTCACATTCTTCTTTCCCCCAAAATCATTATTAGTATCAAGTACTCAACAAATTCATGTTCACAAAAACATCCAAATTGCAAATTCACATTGCCAAGACACACTTTACCCTAAGCTTTGCATTTCCACTCTTTCATTAATCCCAAATCTTCATAAAAAATCAATTCCAGAAATCATATCTTCCAATGTCAATGTCACAATGAATGAAGTCAAATCCTCTGCTGAAAATTGCTCTAACATACTTCACCATATGTCCAAATTGGACCCTATTGAGAAAAGGGCATTAGATGATTGTATTGAACTTTTAGGTGATACAACTATTGATGAGTTACAAACAACTCTTAATGATCTTTCTACTAAAAATAGTAGTAATTCACCTTTAAAGCACTATAATGATCTACAAACACTTCTTAGTGGTGCAATGACAAATCAAGATACTTGTCTTGAAGGAATTCACAAAAGTAAACACAAATTGAGTCAATACATTGAGAAGAACTTGCATACAATATCTCATCATGTGAGCAACTCTCTTGCCATGCTTAAGAAGTTAAAGACAGGGTCGTCTCAAGGGTAAGGCCACTAAAACCTCTATTTTCGGCCCTCAAAATATTGAATTGATTCAAAAAAAATAGTATATTCCTTCTGTTTCATTTTATTTGACATATTTATTATAACATATTTTTGAAGCCATAACACATTTTTTACTCTAGAAAACACTTTTTAACTTTAAATTTTTCGTCTTTTTCTATATTATCACACAAGAGATGCTTTAGACAAGTATCTAAATTAAACTCGATCTTTTTTTAATTCTTAAACTTTATTTTTTGACATCATACAAAATGAAACTAGTGGAGTTTTCTCATATACAACAAGTATAATTTAACTTGACAACCATAAGATTTAAATGTTTTTTTGTTTTTTTTTAAAATTATGTATCTTGTCAAACTAATACACATGAATTAAAACAAATATGGTATAAGTTTTTTCTTTTTCTTTTAAGGAAAAATGTATAAGTATCTCCTCAACTTGTGCCCGAAATCTCAGAGACACACTTATATTATAGTAAGGTTTTATTACCCCCTAAACTTATTTTATAAGTAATTTTCTACCCCTTTTTGGCGCACTAGCTTGAAAAAAAATTAATGGTATAAAATTATTAATAAAATAAGTTCAGGGGTAATAGGCTTTAGTATAGTATAAGTGTGTCTTTAAAATTTCGGGCATAGATTGAGGGGGTACTTGTGCATTATCCCCTTTTTTTTAAAAGAATTTGTTGAAGTTTAATTTCGTAGCGATGAGTGAGTAAATTACTTTAAATTTCTCTACATAATTAAATAGTTTATCTTTCTCCTTTATGTACAATCATTTTAAATAAGTTACTTTTTTTTTGTCTTCATTTATTTAATCATGAATAAATTTAAAAGGCCTCTTATTATAATATAATTTTAGGTCGTCATCAAACTCTAATGAAGTCTTCCCCGAGTACGGCACCATGAAGAATGGGTACCCAAAATGGTTGCAAAAAAAGGACCGGACCCTTTTACAAGCTCCGTTGAACCAAATTAAGTTCAATTTGGTTGTGGCTAAAGATGGTAGTGGTAATTTTACTACTATTAATGCAGCGTTAAGTGCTGCACCAAATTCTTCTAGTACAAGATTTGTGATTTACATCAAGGCGGGAACGTATTTCGAATATATTGACGTAGAAAGAAAGAAAAGTATGATAATGTTCATCGGAGATGGGATCGGAAAAACAGTAATAAAGGGTAATCGGAACGTCGTAGATGGATGGACTACTTTCCGATCAGCTACCGTTGGTAAGTCCAGAACTCTCCTATTTTAATAAGAGTTTAACTTTTATACGTTGATATAGCTAGCATATGAAATTTAATTTTACGTTAACAATACTCATATTGGAGAAATATTAGTTGAGGTTAATAATTTTAAAATAAGATAGATAATTATTTGGACGAAGGCCACGTTTTATATAGTATCATGAGTTGTTGAAGTTAATTCAATGATTTAGACCTTAATTAATTTCATATTATTGGTGTGAAATAATTTTTTAATCATGGGTCATGTACATACATGACTATGATTAATAGGTTGATAGAATTATTCTAATATTCTTTTAGTAATCTAATTATGTTACATAGTATTTTCTCGATCATTTTTATTTATTCGCTATACTAAAAATAATTGTCTAATAATACTTATTTAATCTAAAAATCAAGAGATTATTAATTATTTTAAGGTGTGTGTCAGGTAAATAGCTAGTGGACAATAATTATTGAAATTTGAACATAGGAAGTAGTTTTTTGTAAAAGTAAAGATCATTGGTACCATCATGAAGGGATGAATGAATATATAAGATTTTGTTCATATATTTAATTAAAAATTTCAAATTCAAATTAAAAGACTGGAAAATAATCATAATTAAGACGCATTTCGCTTTTAATAAGTTAGTCATCCTTTTGGATATTATTGTGTAGATATTTGTGTTAGGCAAAAGTTCAAAAGTATGAATTATTAAAAAGAAGATAGTGAAAGATCTTGACATGAAATATTAGCATTGAACATGTAGGGTTATGAAAAAAATATGGATTCTGTCGGTGAGGAAAAACAAAACTAATATATACTCTGTTTACGATTGAGACAATTTTGAAAAATTTAAATTTTATCATGCATAATGGAGGAATCGAAATATTCATATACTATATATTTTTAAAAAATAAATAATTGATTAATCGTACAAAGTACCTTAAAATAGGAAGGGACGGAGCAGGAAAAATGTCGATATATTCATACAATTTGAATAATTTATAAAATTAAATATCAATATTATTGATCAATTAAAAAATTGTCGTGTACCACAATATTATTAACAAATTTATAAAAAAATTCAATAAATTTTATTTATATTTTACTAAATAAAAATTCATAAACTTTAAATATTAAATTTATCTCTGATTTATAACTAGGGAATTTGTAACTAGGGAATGATTGATATATTTATCTCATTAATTACATCTAATAGATAAAGGACCCCACAAAAACTACCTCAACATTAATTTGGTCCTATCTAATAAGTCTATCATATGAGCTATCATAAAAGTTATAAATTCAATAAATTTAATACGTTGATCTAAATTTTATATTTATATTTAATAAAAAAATATTTTAATTGAATTCACTTCAACAGTGCAACTAAATTTATTTTACAGTACGACTCCTATAATCAATGATCCCATGTCTTCTTGTCTGGTTAGTTCATCCCTCCAATAATTTTTGAATCCACGTCAAAAATTAATTAAATAGCTCGACTTGAAGCAATATGTAGCTTTAGCCTTTAATTTAATTAGGACCACCTAGAGTTATTATACGATAGATATGATAGCTTATATTCGATTAAATATTTTAAATTTTAAATATGAAATATTATGATAAAGTATAACTTTAAGTATAGCCAGGAGTAGAGTCAGATAAGATCAAGAAGTTATTAAAAAAAAAAATTTTGACAAAAAATGACATTGTCTGTAAATAAGTAATTTTTTTATAAATGTTGAACCCCGATGATTTTTGAATAATAATAATAATAATTGAATCCACAACTAAATATTTATGAATACTTACTAGTTAGTTTTCTAATTAAAACCTAGGGTCTACATAAGTTACTTTTTCCGTTCAGAATTATTTGTCATGTTACGCTTATCGAAAGTCAATTTGACTCATTTTCAAAGATAAATTGGATCACATTAATTCGATATTTTTTTTAAAAAATAGATATTCTAAAACTATATGAAAAGTACTATAAATTACAATTTTTTGCATATTAATATGATGAAAAAATATATCTTAAAATGTTAATCAAAGTTTTTATAATTTGACTCTAAAAATAGAAACCATGAAAATAATAATGGACGGAGGGAGTACTGTGTTTACATTACTAATATATATAACTAATGCATTAGATCTAAGTAATTTTTAAAAATAAATAGTGTTAGAGTCAAAATTATTAATTTTGATGATTCAGATCATAAATAATATATCCATGCATCCCTAATAAATTGTTTTCCACTAGCTTTAAGCAGAATCCAAAGAAATTTAAGTCTAGTTTTATATAAAAAGTCAAATTCAATTATCGAATATGATATTATTATTATAAAACTTATTATCTTTGAATTTTTTTAAATTGCAGCTGTGGTGGGAAATGGATTCTTAGCTAGAGGCATTACGTTTGAGAACTATGCCGGACCAAGCAAGCACCAAGCGGTGGCGCTGCGGAGCGGCTCCGACCTATCGGCGTTCTACCAATGTAGCTTTATTGCCTATCAAGACACCCTCTACGTCCACTCACTTCGACAATTCTATCGCGATTGCGATGTCTATGGGACGGTTGACTTCATTTTTGGTAACATTATAGTTATCTCGTTTAAATATTTTAGTTGTTATACAATATTTAATAAATTTACTAAAAATATTTATAAGTCAAAATTTTCAGTTTAACCTGCTCTCTTTCTTGGCCATTAAGTTAATACCTCAGATGGTCATATATTTAAATATGTTATCTTGTCATTAAGTTAATACCTCAGATGGTCATATATCCAAATATGTTATCTTATATAAACTTTTCTCTCATACATTCTTTTATATATAATTGATTACTTATTTTTGCTAATAGAGATACGTAGATTCACTACAAAAATATTGTGAATTACATAGGAATTAGTACAAAAATTTATATTAATTCTCAAATAAAATTTCCATTTAATTCACAGTTTTCCTGTAGTGATCGAGTCATCAAACAAGGTTAACTTCTCTTTCAATATATTAGTATGTTATTAGCTTCTATACGAGACATCTGATTACTTCGATCCTAACAGTTTCTTCAAACAGGTAATGCAGCTGTTGTTCTCCAGAATTGTAACTTGTATGCTCGTAAACCTAACCCGAATCAGAAGAACATGTTCACGGCACAAGGAAGAGAAGATCCAAATCAAAACACTGGAATTTCAATCTTGAATTGTAAAGTGGAAGCTGCATCGGATTTAGTTCCTGTTGTATCGTCATTCAAAAATTACTTAGGACGACCATGGAAACAATATTCAAGAACTGTAATTCTCATATCCAATATTGGAAGCTTAATTGATCCTGCTGGTTGGTTAGAATGGAGTGGTGATTTTGCATTGAACACACTTTATTATGGAGAGTATTTGAACCGGGGACCCGGTTCAAATACTAGTGCTAGAGTAAAATGGCCCGGTTATCGGGTCATTAATAGCTCTAGTGAGGCCAGTCAATTCACTGTTGGAAATTTTATTCAAGGGAGTGAGTGGATACCTGCTACCGGGGTGCCATTTTATTCTGGTTTGACTTCCTCTTGAATACATTATTTTAAATCAGCGACCGCTGAGGGTTTATCTTATAGGGTATTTATTAATATAATTTTTATCAAAAATATCAACAACTTATGGGGTATTTATTAATATATATACCTTGGAGATAACAACCACAATAGTTACTAGTCTGGTTCATTGCTTGCATATGTTCATGTGTTAAGATTTTTCTTAGCATATGTTGTTTTAGCTTGTTTTCCTATTGAGAATATATATATATATATATATATATATATTATAATATTTCTTTTTGTGAGAAATTTGATGTCAGAGCTTCATTTCTTGAGGAATTGTTAATGTCAATGAATGTAGTGCCAATATAAGTTTGATCTTTATCATGAATAAATTTTGAATGTATTTATTTATATAA</genome_strand>
        <mrna_strand>TACTACTCATTTCCACCACAAAGTTCCCAAAATGTATATCCAAAAAGAGAAACCTTCACTTTCTCTTGCTCTTTCATTCATTTTCTTGCTCACATTCTTCTTTCCCCCAAAATCATTATTAGTATCAAGTACTCAACAAATTCATGTTCACAAAAACATCCAAATTGCAAATTCACATTGCCAAGACACACTTTACCCTAAGCTTTGCATTTCCACTCTTTCATTAATCCCAAATCTTCATAAAAAATCAATTCCAGAAATCATATCTTCCAATGTCAATGTCACAATGAATGAAGTCAAATCCTCTGCTGAAAATTGCTCTAACATACTTCACCATATGTCCAAATTGGACCCTATTGAGAAAAGGGCATTAGATGATTGTATTGAACTTTTAGGTGATACAACTATTGATGAGTTACAAACAACTCTTAATGATCTTTCTACTAAAAATAGTAGTAATTCACCTTTAAAGCACTATAATGATCTACAAACACTTCTTAGTGGTGCAATGACAAATCAAGATACTTGTCTTGAAGGAATTCACAAAAGTAAACACAAATTGAGTCAATACATTGAGAAGAACTTGCATACAATATCTCATCATATGAGCAACTCTCTTGCCATGCTTAAGAAGTTAAAGACAGGGTCGTCTCAAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTCATCAAACTCTAATGAAGTCTTCCCCGAGTACGGCACCATGAAGAATGGGTACCCAAAATGGTTGCAAAAAAAGGACCGGACCCTTTTACAAGCTCCGTTGAACCAAATTAAGTTCAATTTGGTTGTGGCTAAAGATGGTAGTGGTAATTTTACTACTATTAATGCAGCGTTAAGTGCTGCACCAAATTCTTCTAGTACAAGATTTGTGATTTACATCAAGGCGGGAACGTATTTCGAATATATTGACGTAGAAAGAAAGAAAAGTATGATAATGTTCATCGGAGATGGGATCGGAAAAACAGTAATAAAGGGTAATCGGAACGTCGTAGATGGATGGACTACTTTCCGATCAGCTACCGTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTGGTGGGAAATGGATTCTTAGCTAGAGGCATTACGTTTGAGAACTATGCCGGACCAAGCAAGCACCAAGCGGTGGCGCTGCGGAGCGGCTCCGACCTATCGGCGTTCTACCAATGTAGCTTTATTGCCTATCAAGACACCCTCTACGTCCACTCACTTCGACAATTCTATCGCGATTGCGATGTCTATGGGACGGTTGACTTCATTTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGCAGCTGTTGTTCTCCAGAATTGTAACTTGTATGCTCGTAAACCTAACCCGAATCAGAAGAACATGTTCACGGCACAAGGAAGAGAAGATCCAAATCAAAACACTGGAATTTCAATCTTGAATTGTAAAGTGGAAGCTGCATCGGATTTAGTTCCTGTTGTATCGTCATTCAAAAATTACTTAGGACGACCATGGAAACAATATTCAAGAACTGTAATTCTCATATCCAATATTGGAAGCTTAATTGATCCTGCTGGTTGGTTAGAATGGAGTGGTGATTTTGCATTGAACACACTTTATTATGGAGAGTATTTGAACCGGGGACCCGGTTCAAATACTAGTGCTAGAGTAAAATGGCCCGGTTATCGGGTCATTAATAGCTCTAGTGAGGCCAGTCAATTCACTGTTGGAAATTTTATTCAAGGGAGTGAGTGGATACCTGCTACCGGGGTGCCATTTTATTCTGGTTTGACTTCCTCTTGAATACATTATTTTAAATCAGCGACCGCTGAGGGTTTATCTTATAGGGTATTTATTAATATAATTTTTATCAAAAATATCAACAACTTATGGGGTATTTATTAATATATATACCTTGGAGATAACAACCACAATAGTTACTAGTCTGGTTCATTGCTTGCATATGTTCATGTGTTAAGATTTTTCTTAGCATATGTTGTTTTAGCTTGTTTTCCTATTGAGAATATATATATATATATATATATATATATTATAATATTTCTTTTTGTGAGAAATTTGATGTCAGAGCTTCATTTCTTGAGGAATTGTTAATGTCAATGAATGTAGTGCCAATATAAGTTTGATCTTTATCATGAATAAATTTTGAATGTATTTATTTATATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320559" ref_strand="+" ref_description="SGN-U320559        Tomato 200607 #1 [11 ESTs aligned] arabidopsis/peptide: AT1G02790.1 | Symbol: None | exopolygalacturonase / galacturan 1,4-alpha-galacturonidase (PGA3) / pectinase, identical to SP:P49062 Exopolygalacturonase clone GBGE184 precursor (EC 3.2.1.67) (ExoPG) (Galacturan 1,4-alpha-galacturonidase) {Arabidopsis thaliana} | chr1:610448-612294 REVERSE | Aliases: T14P4.31 (evalue: 9e-93, score=337) genbank/nr: gi|10185719|gb|AAG14416.1| NTS1 protein [Nicotiana tabacum](evalue: 0, score=639)">
      <seq>ccttctttaatttctcacttttttttcttctttatttttattttttcaatttcctatttaggccacaaccacaatggctattccaaaaggattagaaatcaataatattgtaggattattcttacttttgggtatagccattttatcatcaaaagttgcagaatgtgcaccttttggttcgcgtcgtggccttatggagacagttttcgatgttaccaagcacggagctagaccagatcccactgcagatagcactcggggatttatgatggcatggagagcagcatgtcaatcaacaggcccagcaaaaattgttattccaccaggaacatttactacaggagaaactatttttcaaggcccatgtacatgtccaaagcccattattattgaaattcaagggacagtattgtcaaatacagacataagtttgtactcacgtgcctcgtggatatccctcgaacacgtggacggtgtcgttattacaggtggcggaactctaaacggacaaggaaatgccagctggcagtatgctgacaaatccggaagcgctcctcctctccctatctctcttgtatttcaaactgtgaagagttcttccatcaatggcataaattttgtggattccaaaggtgtccatttgaaaattactgatagtaatgacattacagtttcaaaaatcaagattacagcaccagcaacaagtccaaatactgatggaattcatataagtgaaacaattaatatcaatgttactgatagcaacattgggacaggtgatgattgcattagtgttggacatggtactaccaatatttttgtcaataatattcattgtggccctggacatggaataagcattggaagccttggaaagagaccagatgagaaggatgttacaaaagtttatataaaaaattgtacattccacagtacaacaaatggtgcaagaatcaagacttatatggattcatctccactacaagtttctgatgttgtttatgaagatattgttttggaggatgttaaaaatccaattcttattgatcaacactataattccaagaacaaggttgagccatcaaaagtgaaactaaaagatattcacttcaagaacataagggggacaacaaattcaaaagctccagtatcacttaattgcagtgaagcagctccatgtgaaggagttgaattggctgatatcaatatagctccatctggtacaactggacctctacaaggagcaacatgtcaaaatgccaagacagtattcaatggaaaaactaatgttccagcatgtaaataattacattacattattaatcaaatcatgtccatatgaagtatgtgtataaatttcaatataaccatgtaattttgtttatggtttattataatatttatttaattttttttcgatgcctggaaatagaaaaaaaaagataaaatttagcgcttgacgcatattagctacggatgtagctagttagggttagtttcttagctaaatacatgcatgtgttcttgtgtatccacataatttatttatggttaattacgatatttttctttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64874" stop="87933"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65174" g_stop="65432" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65433" i_stop="65539" i_length="107">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65540" g_stop="65848" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="568" r_length="309" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65849" i_stop="65932" i_length="84">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.131" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65933" g_stop="66222" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="858" r_length="290" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66223" i_stop="66360" i_length="138">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66361" g_stop="66580" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="859" r_stop="1078" r_length="220" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66581" i_stop="67635" i_length="1055">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67636" g_stop="68045" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1079" r_stop="1479" r_length="401" r_score="0.956"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68046" i_stop="68238" i_length="193">
            <donor d_prob="0.003" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68239" g_stop="68261" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1480" r_stop="1502" r_length="23" r_score="0.739"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68262" i_stop="71000" i_length="2739">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.758" a_score="0.67"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="71001" g_stop="71082" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1503" r_stop="1584" r_length="82" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-U320559" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>1593</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65174" e_stop="65432"/>
          <exon e_start="65540" e_stop="65848"/>
          <exon e_start="65933" e_stop="66222"/>
          <exon e_start="66361" e_stop="66580"/>
          <exon e_start="67636" e_stop="68045"/>
          <exon e_start="68239" e_stop="68261"/>
          <exon e_start="71001" e_stop="71082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCTTTAATTTCTCAC-TTTTTTTCTTCTTTATTTTTATTTTTTTCAATTTCCTATTTAGGCCACAACCACAATGGCTATTCCAAAAGGATTAGAAATCAATAATATTGTAGGATTATTCTTACTTTTGGGTATAGCCATTTTATCATCAAAAGTTGCAGAATGTGCACCTTTTGGTTCGCGTCGTGGCCTTATGGAGACAGTTTTCGATGTTACCAAGCACGGAGCTAGACCAGATCCCACTGCAGATAGCACTCGGGTAAAACCCAAACTTATATTTAAATTTCTAGCTCTGCGCACTCTGCCGTAAAGCCAAAAATAAATTGGAGGCCTAACTTTTTTCTTTTTTGTTGTTGGTTTTAATAGGGATTTATGATGGCATGGAGAGCAGCATGTCAATCAACAGGCCCAGCAAAAGTTGTTATTCCACCAGGAACATTTACTACAGGAGAAACTATTTTTCAAGGCCCATGTACATGTCCAAAGCCCATTATTATTGAAATTCAAGGGACAGTATTGTCAAATACAGACATAAGTTTGTACTCACGTGCCTCATGGATATCCCTCGAACACGTGGACGGTGTCGTTATTACAGGTGGCGGAACTCTAAACGGACAAGGAAATGCCAGCTGGCAGTATGCTGACAAAAGCGGAAACTCTCCTCCTCTCCCTACGGTAAGTACAGATGATCACTCAATTTATAGTTGCTCGCTCTTCACTATTAAAAGTTATTAATTATTATTATATTTGTGTGTGTAGTCTCTTGTATTTCAAACTGTGAAGAGTTCTTCCATCAATGGCATAAATTTTGTGGATTCCAAAGGTGTCCATTTGAAAGTTACTGATAGTAATGACATTACAGTTTCAAAAATCAAGATTACAGCACCAGCAACAAGTCCAAATACTGATGGAATTCATATAAGTGAAACAATTAATATCAATGTTACTGATAGCAACATTGGGACAGGTGATGATTGCATTAGTGTTGGACATGGTACTACCAATATTTTTGTCAATAATATTCATTGTGGCCCTGGACATGGAATAAGGTTAGTTTTTTAATTAATAATGATCTTTTCATAGTGTTAAAATAGAAAATCATCAAGAATTGAGGGATTAAATGTACTACTAGCCTTTTCAAAAAAATGTAGGCATTTAAAGATTCTAAATGTAGTTTTTTTGTGCAGTATTGGAAGCCTTGGAAAGAGACCAGATGAGAAGGATGTTACAAAAGTTTATATAAAAAATTGTACATTCCACAGTACAACAAATGGTGCAAGAATCAAGACTTATATGGATTCATCTCCACTACAAGTTTCTGATGTTGTTTATGAAGATATTGTCTTGGAGGATGTTAAAAATCCAATTCTTATTGATCAACACTATAATTCCAAGAACAAGGTTGAGGTAAAGTTATCATAACTACTTTTTACTAACTAATTACTCGACACTAAGGGGGAAAAGGGTCTGATATACCCCCTCAACTTTGTCATTTAGAGCTGATATACTCCTCGTTATAAAAGTGGCTCATATATAAGTTTTAATCTAAGTTTTTATTATTTTTTTCTAAAAAATATAATTCCATATAAATAAATTTAATCCTCGTCAAACTTATTTTTTTAGACTTTTTTTTGTTTCAATGACTAATTTATAATTATTATTTTGATAATCAAATTTATTTATGTTTCACTAATATTCTTGTAAAACTTATTATAGATGACCAAATTTTTTCTTCGAATACGAAATTAAATTACAATACGCACAAAAAAATAGTTTAAATTTTTTTCCTTTAAACTAAGGAATGAAAGAAAAAAACATAATAAGAATAAGAAACCCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCTCTAAATAATTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTCCGTTAAATGAAGGGTATATGTGAGCCATGTTTGTGACGACAGGGGTATATGTGAGCCGTTTTTATAACGGTAAGGACATATATGAGTCACTTTTATAACGAAGGGTATATCAGCTCCAAATGACAAAATTGAGGGATATATCAGACCCTTTTCCCTTTTTTTAATATTCAGGCCTTGCTCGACAGAGTTAATTAATTACTCCATACCTATGTCAATGAGAGATAACAAGTACCTCAAGTTCTATTTAGGACAATAGTGTTAAGATCACCATGAATTGAAATACTAATACAATTTTAAATTGTGATTTTTTCGACTGATCCAAACCTTACTAAGCGGAGTTAGATGAGAGATGATAAATATCATGGTAAGCTATTAGTATATGATCGTAACACATGGATTTGAGTTAATATTACTAGTTTTTTTTTTAGATCAATTTCACTTATACATTATTATATTTTGTTTGGTATAGCCATCAAAAGTGAAACTAAAAGATATTCACTTCAAGAACATAAGGGGGACAACAAATACAAAAGCTCCAGTATCACTTAATTGCAGTGAAGCAGCTCCATGTGAAGGAGTTGAATTGGCTGATATTGATATAGCTCCATCTGGTACAACTGGACCTCTACAAGGAGCAACATGTCAAAATGCCAAGACAGTATTCAATGGAAAAACTAATGTTCCAGCATGTAAATAATTACATTACATTATTAATCAAATCATGTCCATATGAAAAAATGTGTATAAATTTCAATATAACCATGTAATTTTGTTTATGGTTTATTATAATATTTATTTATATTTTTTTTTTCGATGCCTGGAAATAGAAAAAAAAGAAGAAGATAAAATTTAGCGCTTGACGCATATTAGCTAGTTAGGGTTAGTTTCTTAGCCATAATAATGCATGTTATAAGTAGTTAGGGATACCAACCCCTAGCTAAATACATGCATGTGTTCTTGTGTATCCACATAATTTATTTATGGTTAATTACGATGTTTTTTCTTTTTTTCTTGGGTTTTTTGGGAAAAAAATAATTGAAATTTAGCTTGGTTCATATTAGCTATAAAATTATATATAGTAAAGGTTATTTTCTAATGGAAAATATTTCATTCTTTTCCACAAATTTCAATCTATCACCAAATAAGAAAGGTTTTAATTTTTTTTGTTAGAATTGAGAAATTATCTAATCTTATAAGTAGACAAAGTTATTTTTTATTATTAAATAGAAGTGACATGAGAAAAGAAAAGGAAAGTTACATGATTTGGCAAATTTATACTGTTAATTACTCATCATAGCTATAGTTTGTTATAACTATTACTTGTGATTAATATTATACATAAATTACGTGGGCTGACTTTGAGTTTGTATAATTAGTCATGTTTTTTAATAGGGCAACTTTCACATATGGCAAACAAAAAATTCATATTTGTATGCTATAGCAAAGTTTGCATAATTGCGCTCCATAGCAAACATAAAATTGTATAATTCGCTATACATATACAATTGTATAATTCGCTGGCCTATTTCGCTGCAATTGTATAATTTGCTTTGCATACAGTTGAACCGAATTAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCACTGTATACAAAAACAGAAACACAATATATACACTTCTGTTATATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCGTTGCCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACAAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAATTATACACTTCTGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGAGAGACGCTGGCAAATTTTAGCTAATGTTTGCTATGGAGCACAATTAAATCAAACCCTAGCTATTTCATTTAATTTAGGTTATTAGTTTGCTATTATATACAATTTTCCCTTTTTAATATATAACTCGCCAGAATATGCAATTACATATGCATAATATACAATTATTTAACATATATATATATATATATATATATATATATATATATATATATACAACTCACCTCTCTCCTACTCTATGCCCTCTCTCGCTCGCCTCTCTCCTCCCTCTCCCAATCTTGCTCGCGATATATACAAACGCATATATAATATACAATTATATACATATACAATTCATCTCTTTCTCCCTCTCTGCCCCCCTCCCCCTCCCCCTTTCGCTCGCTTCTCTCCTTCCTCTCCCAATCTGGCTCGCCTCTCTCCTTCCTCTCCCAGTCTCACTCGTCTCTTTCATCGCTCTCCCAATCTCACGTGCCATGAATGCATATGTATAACATACAATTATCTAACTGATATACATATACAATTTACCTTTCTCCCACTCTTTTCCCCCTCTCTCACCTCTCTCCTCTCTCTCTCAGTCTCGATCGCCTCTCTCCTCCATATAACATGTAGTTATGAATTGTAATTATCAAACTATAGCTATTGAGAATAATTAGACTATTTTTAAGTGGCTATATATGAAAGTTCCCAAGAAATACCAATATATTAGTCAAAAATTTGTTCACTCCCTAATAATTATTTAATCATCATCTTATAATTCTATATTATAAAAATATATAACTTGATCACGTGACTCTAAGGACTCTAGATTGTATATACGCCACGACTAGCTGGTTTTGGGTTCCCTAATGAATTCATGGTCTAAACTCTGAACTATATAATTCTAGCACTTAAGAGACAATTTAATACATATATAACAAATTTGAGAACAAATACATTTTCTAGTAATTTGTATTCAAAGTTTACTTAAATATTGAAAAATTAAATTATAAATTGTGAAATATATATATATATATATATTGAATTTTGTAAATTGCTACATCTTAACGTATTTAGGTGAAAATTAACTAATTCTGGGCCCAGGTGACGTTTCACTTCTAATCACAACTCATTTGTTGATTCTTCCATACAATAGATCACATAAATTCATGTCTATAAGTAGTGATAATTGTCTTATAAAGATTTGCTTTAGTTATGACTTTAATTAAGTCACTGCTTATGAATCACCAATTCATTTTTTTACGATCAATAACCTGGCTCCTCCCCAATCTAACAGACTTATTTTTATCATTTTTCAAATTTTTCTCACAAACCTTCAATAGTGTTCTTATCTTGAATTTTATACTCAATCTTTATTTAATGAGCTATTATTCATCATTACCATTGCATAAAAAAGTTTGTATAACATGATTTCTATATTGTGTTATAATGATAGAAGAAGATGAGCAACAAATATGTTTTTTTTTTGGTCTAAAGTTGGTCAACTATGAAATATTAAAAAATTTGAAAAAATTTCTTAAAACTGGCTACTAGTGCAATTAGTTTTAATCCTCAGTACTAAGAGGCCCATTGGACCAAAGACAGTTTCTAAGCCCATTTCGAAAAACCCTAGGGCATTAATTTCAGAAGTATAAAAGCCTCCTCTCCCAACTACTGTCCATTTCTCCTTCGTTCGCAGCTTCACAAAATCGAAAATGGTTTCGTTGAAGCTCCAGAAGCGGCTCGCCGCTAGTGTCCTCAAGTGTGGAAGAGGCAAAGTTTGGCTTGATCCTAATGAAGGCAATGAAATCTCCATGGCCAATTCCCGTATGTTTCTGTTTTCTGTTTGTTATCAATATCTATTTACGTTTATGCTATCTCTTTTAATCTCTTGTTTGTATGTTATGGCTTCTGATTGTGAAAGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>CCTTCTTTAATTTCTCACTTTTTTTTCTTCTTTATTTTTATT-TTTTCAATTTCCTATTTAGGCCACAACCACAATGGCTATTCCAAAAGGATTAGAAATCAATAATATTGTAGGATTATTCTTACTTTTGGGTATAGCCATTTTATCATCAAAAGTTGCAGAATGTGCACCTTTTGGTTCGCGTCGTGGCCTTATGGAGACAGTTTTCGATGTTACCAAGCACGGAGCTAGACCAGATCCCACTGCAGATAGCACTCGG...........................................................................................................GGATTTATGATGGCATGGAGAGCAGCATGTCAATCAACAGGCCCAGCAAAAATTGTTATTCCACCAGGAACATTTACTACAGGAGAAACTATTTTTCAAGGCCCATGTACATGTCCAAAGCCCATTATTATTGAAATTCAAGGGACAGTATTGTCAAATACAGACATAAGTTTGTACTCACGTGCCTCGTGGATATCCCTCGAACACGTGGACGGTGTCGTTATTACAGGTGGCGGAACTCTAAACGGACAAGGAAATGCCAGCTGGCAGTATGCTGACAAATCCGGAAGCGCTCCTCCTCTCCCTATC....................................................................................TCTCTTGTATTTCAAACTGTGAAGAGTTCTTCCATCAATGGCATAAATTTTGTGGATTCCAAAGGTGTCCATTTGAAAATTACTGATAGTAATGACATTACAGTTTCAAAAATCAAGATTACAGCACCAGCAACAAGTCCAAATACTGATGGAATTCATATAAGTGAAACAATTAATATCAATGTTACTGATAGCAACATTGGGACAGGTGATGATTGCATTAGTGTTGGACATGGTACTACCAATATTTTTGTCAATAATATTCATTGTGGCCCTGGACATGGAATAAG..........................................................................................................................................CATTGGAAGCCTTGGAAAGAGACCAGATGAGAAGGATGTTACAAAAGTTTATATAAAAAATTGTACATTCCACAGTACAACAAATGGTGCAAGAATCAAGACTTATATGGATTCATCTCCACTACAAGTTTCTGATGTTGTTTATGAAGATATTGTTTTGGAGGATGTTAAAAATCCAATTCTTATTGATCAACACTATAATTCCAAGAACAAGGTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATCAAAAGTGAAACTAAAAGATATTCACTTCAAGAACATAAGGGGGACAACAAATTCAAAAGCTCCAGTATCACTTAATTGCAGTGAAGCAGCTCCATGTGAAGGAGTTGAATTGGCTGATATCAATATAGCTCCATCTGGTACAACTGGACCTCTACAAGGAGCAACATGTCAAAATGCCAAGACAGTATTCAATGGAAAAACTAATGTTCCAGCATGTAAATAATTACATTACATTATTAATCAAATCATGTCCATATG-AAGTATGTGTATAAATTTCAATATAACCATGTAATTTTGTTTATGGTTTATTATAATATTTATTTA-A--TTTTTTTTCGATGCCTGGAAATAG---AAAAA-AA-AAGATAAAATTTAGCGCTTGACGCATATTAGCTACGGATG.................................................................................................................................................................................................TAGCTAGTTAGGGTTAGTTTCTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAAATACATGCATGTGTTCTTGTGTATCCACATAATTTATTTATGGTTAATTACGATATTTTTCTTTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344226" ref_strand="+" ref_description="SGN-U344226        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 2e-07, score=59.3)">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="66581" stop="67636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66881" g_stop="67339" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-U344226" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U344226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66881" e_stop="67339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTATAGATGACCAAATTTTTTCTTCGAATACGAAATTAAATTACAATACGCACAAAAAAATAGTTTAAATTTTTTTCCTTTAAACTAAGGAATGAAAGAAAAAAACATAATAAGAATAAGAAACCCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCTCTAAATA--ATTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTCCGTTAAATGAAGGGTATATGTGAGCCATGTTTGTGACGACAGGGGTATATGTGAGCCGTTTTTATAACGGTAAGGACATATATGAGTCACTTTTATAACGAAGGGTATATCAGCTCCAAATGACAAAATTGAGGGATATATCAGACCCTTTTCCCT-TTTTTTAATA-TTCAGGC</genome_strand>
        <mrna_strand>TTATTGTAGATGACC-AATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATATTTGAATTTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATG-AAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCAT-TTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCCCTATTTTTTAAAATTTCATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313767" ref_strand="+" ref_description="SGN-U313767        Tomato 200607 #1 [50 ESTs aligned] arabidopsis/peptide: | Symbol: None | late embryogenesis abundant 3 family protein / LEA3 family protein, similar to several small proteins (~100 aa) that are induced by heat, auxin, ethylene and wounding such as Phaseolus aureus indole-3-acetic acid induced protein ARG (SW:32292); contains Pfam profile PF03242: Late embryogenesis abundant protein | chr4:1046204-1046996 REVERSE | Aliases: T14P8.2, T14P8_2(evalue: 1e-16, score=84) genbank/nr: gi|2981167|gb|AAC06242.1| late embryogenis abundant protein 5 [Nicotiana tabacum] (evalue: 3e-20, score=102)">
      <seq>tttccttcagattttaaaaaaaatttcaaatttgttgctgcggaagtaattaaaatttcgatttcttccgctgcaacttcaattcaattttgattgattgatcttcttctattctcagcaatatcaattacaatggctcgttatttatccaactgcaaaaatatctctgcttttgttgtagactctgtttctgtagctatccagaggcgtggatacgcggccacggcagcacagggtggtgtttctggtagtgtaagaggtagtgggagtgttagaagcaatgtgatggaatcaaacaagacttcatgggtaccagatcctgttactggttattacagaccagaaactcatgctaaggaaattgatgctgctgaacttagaaacatgttgttgaagtacaaacctagacaaaattgaaaaaaaaaaaagaacaaattagaggatcaagaatcacgtttcgatgagtagagacgaattaggatttggatattgaagttcaatagtagaaatattgtaatttctcacatattatgtttgtttttcgcataaggaaaatgttgaattcagttgaatacgttggacatgtattacatattagattttcactttttgattaattctaaaaaaaaacaattagaagatcaagaattacattttgatgagtagatgaattcaggattgaaatattggagttcaatagtgaaaatattgtaatttttcacatattatgtttgttttctgcataagaaaaatgtttgaattcaactgaatacgttgaacatgccttnnnnaaaaaaaaaaanaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73727" stop="72022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73427" g_stop="73222" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73221" i_stop="72903" i_length="319">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72902" g_stop="72325" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="784" r_length="578" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="792" polyA_stop="814"/>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-U313767" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U313767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73427" e_stop="73222"/>
          <exon e_start="72902" e_stop="72325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCTTCAGATTTTAAAAAAAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGAAAATGTTGAATTCAGTTGAATACGTTGGACATGTATTACATATTAGATTTTCACTTTTTGATTAATTCTAAAAAAAAACAATTAGAAGATCAAGAATTACATTTTGATGAGTAGATGAATTCAGGATTGAAATATTGGAGTTCAATAGTGAAAATATTGTAATTTTTCACATATTATGTTTGTTTTCTGCATAAGAAAAATGTTTGAATTCAACTGAATACGTTGAACATGC</genome_strand>
        <mrna_strand>TTTCCTTCAGATTTTAAAAAAAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAG...............................................................................................................................................................................................................................................................................................................................GCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGAAAATGTTGAATTCAGTTGAATACGTTGGACATGTATTACATATTAGATTTTCACTTTTTGATTAATTCTAAAAAAAAACAATTAGAAGATCAAGAATTACATTTTGATGAGTAGATGAATTCAGGATTGAAATATTGGAGTTCAATAGTGAAAATATTGTAATTTTTCACATATTATGTTTGTTTTCTGCATAAGAAAAATGTTTGAATTCAACTGAATACGTTGAACATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313765" ref_strand="+" ref_description="SGN-U313765        Tomato 200607 #1 [15 ESTs aligned] arabidopsis/peptide: | Symbol: None | late embryogenesis abundant 3 family protein / LEA3 family protein, similar to several small proteins (~100 aa) that are induced by heat, auxin, ethylene and wounding such as Phaseolus aureus indole-3-acetic acid induced protein ARG (SW:32292); contains Pfam profile PF03242: Late embryogenesis abundant protein | chr4:1046204-1046996 REVERSE | Aliases: T14P8.2, T14P8_2(evalue: 4e-08, score=55.8) genbank/nr: gi|2981167|gb|AAC06242.1| late embryogenis abundant protein 5 [Nicotiana tabacum] (evalue: 4e-12, score=75.5)">
      <seq>cagattttaaaaaaaatttcaaatttgttgctgcggaagtaattaaaatttcgatttcttccgctgcaacttcaattcaattttgattgattgatcttcttctattctcagcaatatcaattacaatggctcgttatttatccaactgcaaaaatatctctgcttttgttgtagactctgtttctgtagctatccagaggtaaacaaaaatatcattctttttttcccaatttccgagtttaaaaacgggtttatctgagttaaaataaaatgaacaatagaaatttgtgtagctgtaaatcttttaatttaaaataaaattaatattttaaagttaaattgttagcgagtaaagaaataaaaaacagagttgtatgattgttggttctgtttttcctttttcttttcaaaatatgttaattttaccttttattatatacttttgggataatttatatcattgtcgttagtgtttacgttattttatttaaattttgaatttgtctctaataatataggcgtggatacgcggccacggcagcacagggtggtgtttctggtagtgtaagaggtagtgggagtgttagaagcaatgtgatggaatcaaacaagacttcatgggtaccagatcctgttactggttattacagaccagaaactcatgctaaggaaattgatgctgctgaacttagaaacatgttgttgaagtacaaacctagacaaaattgaaaaaaaaaaaagaacaaattagaggatcaagaatcacgtttcgatgagtagagacgaattaggatttggatattgaagttcaatagtagaaatattgtaatttctcacatattatgtttgtttttcgcataaggaaaatgttgaattcagttgaatacgttggacatgtattacatattagattttcactttttgattaattttaaaaaaaaacaattagaagatcaagaattacattttgatgagtagatgaattcaggattgaaatattggagttcaatagtggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73720" stop="72101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73420" g_stop="72399" g_length="1022"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1022" r_length="1022" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1023" polyA_stop="1046"/>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-U313765" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1022</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U313765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73420" e_stop="72399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATTTTAAAAAAAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGAAAATGTTGAATTCAGTTGAATACGTTGGACATGTATTACATATTAGATTTTCACTTTTTGATTAATTCTAAAAAAAAACAATTAGAAGATCAAGAATTACATTTTGATGAGTAGATGAATTCAGGATTGAAATATTGGAGTTCAATAGTGAAAATATT</genome_strand>
        <mrna_strand>CAGATTTTAAAAAAAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGAAAATGTTGAATTCAGTTGAATACGTTGGACATGTATTACATATTAGATTTTCACTTTTTGATTAATTTTAAAAAAAAACAATTAGAAGATCAAGAATTACATTTTGATGAGTAGATGAATTCAGGATTGAAATATTGGAGTTCAATAGTGGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345634" ref_strand="+" ref_description="SGN-U345634        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | magnesium/proton exchanger (MHX1), identical to magnesium/proton exchanger AtMHX (Arabidopsis thaliana) gi:6492237:gb:AAF14229; Ca2+:Cation Antiporter (CaCA) Family member PMID:11500563 | chr2:19531230-19534483 REVERSE | Aliases: T30B22.10(evalue: 1e-47, score=187) genbank/nr: Sodium/calcium(evalue: 1e-46, score=190)">
      <seq>cctcttggccagcaaaattgctgcagaacgacaacttacagctgactctgccattgctaacattacctgcagcaattcggtgaacatctatataggcattggcgtaccatggctaatcgatacattgtacaactacattgcatacaacgagccattgcgaatagaaaatgcagaaggactaagtttctctctgcttgttttcttctctacttctgtagcctgcatcggtgttttggtgtttagacgactcactatcggtgctgagcttggcgggccaagagtttgggcatgggtaacttgcatattcttcatgttgttatggcttatatttgttgtgctatcttctctcagagtttctggtattatataacaatcttagtccaaatcattcctagaaaggggtaatttttttactcatcgtatctatcgatggatattggtctgagatgggtttaaacaacaatctatggtcgattctgatttgcttgggattgatagtagttgttattgttgtattatattgatttatggatattggactgagatgggcttaaatggagcgatatcaacattgaagatttatatggtcgatttctatagtagttattgttgtattgtaatgatcgatgtaatgtagccttacactcttgcaagttgtatgcatgcatgcatgcactcaattatgaattttggtaaagtgtaaattttttaaatttattgtattgatcgacgtatattgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77840" stop="76119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77541" g_stop="77470" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77469" i_stop="77089" i_length="381">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77088" g_stop="76419" g_length="670"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="742" r_length="670" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-U345634" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U345634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77541" e_stop="77470"/>
          <exon e_start="77088" e_stop="76419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCGTGGCCAGCAAAATTGCTGCAGAACGACAACTTACAGCTGACTCTGCCATTGCTAACATTACCTGCAGGTTTCTTTATCAGTCAACAATGCCCTTAACCTATTACATATTATTATACATTGATAGAAGTCATGCCAGGTCCATAGAGATTGGCAAATTGCTTTCGTCGTTTTCCAATTTTCATTGTCCCCTTCTCCAAGTCTCACGGAATAGCAATTTAGGTGGTATAGAAGTTCATCAATTTTATTTTTTCCCTTATTTGCAGTATGTAGATGAACCAAACAACCCCTTAATACAGCAGTTAGCCAATGCCTAGCTAGTAAAAATTCACATAAGGTGCATGTTTTTATTAACTTAATTTGTTAACCTCTTTAGGAAATGTGAATTTGACATTGTCATTCCTTGGAGCAAGATATCCTGGTGTCTGACTTAGTGTTTTTGTCCTTGTAGCAATTCGGTGAACATCTATATAGGCATTGGCGTACCATGGCTAATCGATACATTGTACAACTACATTGCATACAACGAGCCATTGCGAATAGAAAATGCAGAAGGACTAAGTTTCTCTCTGCTTGTTTTCTTCTCTACTTCTGTAGCCTGCATCGGTGTTTTGGTGTTTAGACGACTCACTATCGGTGCTGAGCTTGGCGGGCCAAGAGTTTGGGCATGGGTAACTTGCATATTCTTCATGTTGTTATGGCTTATATTTGTTGTGCTATCTTCTCTCAGAGTTTCTGGTATTATATAACAATCTTAGTCCAAATCATTCCTAGAAAGGGGTAATTTTTTTACTCATCGTATCTATCGATGGATATTGGTCTGAGATGGGTTTAAACAACAATCTATGGTCGATTCTGATTTGCTTGGGATTGATAGTAGTTGTTATTGTTGTATTATATTGATTTATGGATATTGGACTGAGATGGGCTTAAATGGAGCGATATCAACATTGAAGATTTATATGGTCGATTTCTATAGTAGTTATTGTTGTATTGTAATGATCGATGTAATGTAGCCTTACACTCTTGCAAGTTGTATGCATGCATGCATGCACTCAATTATGAATTTTGGTAAAGTGTAAATTTTTTAAATTTATTGTATTGATCGACGTATATTGGGT</genome_strand>
        <mrna_strand>CCTCTTGGCCAGCAAAATTGCTGCAGAACGACAACTTACAGCTGACTCTGCCATTGCTAACATTACCTGCAG.............................................................................................................................................................................................................................................................................................................................................................................................CAATTCGGTGAACATCTATATAGGCATTGGCGTACCATGGCTAATCGATACATTGTACAACTACATTGCATACAACGAGCCATTGCGAATAGAAAATGCAGAAGGACTAAGTTTCTCTCTGCTTGTTTTCTTCTCTACTTCTGTAGCCTGCATCGGTGTTTTGGTGTTTAGACGACTCACTATCGGTGCTGAGCTTGGCGGGCCAAGAGTTTGGGCATGGGTAACTTGCATATTCTTCATGTTGTTATGGCTTATATTTGTTGTGCTATCTTCTCTCAGAGTTTCTGGTATTATATAACAATCTTAGTCCAAATCATTCCTAGAAAGGGGTAATTTTTTTACTCATCGTATCTATCGATGGATATTGGTCTGAGATGGGTTTAAACAACAATCTATGGTCGATTCTGATTTGCTTGGGATTGATAGTAGTTGTTATTGTTGTATTATATTGATTTATGGATATTGGACTGAGATGGGCTTAAATGGAGCGATATCAACATTGAAGATTTATATGGTCGATTTCTATAGTAGTTATTGTTGTATTGTAATGATCGATGTAATGTAGCCTTACACTCTTGCAAGTTGTATGCATGCATGCATGCACTCAATTATGAATTTTGGTAAAGTGTAAATTTTTTAAATTTATTGTATTGATCGACGTATATTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327953" ref_strand="+" ref_description="SGN-U327953        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | magnesium/proton exchanger (MHX1), identical to magnesium/proton exchanger AtMHX (Arabidopsis thaliana) gi:6492237:gb:AAF14229; Ca2+:Cation Antiporter (CaCA) Family member PMID:11500563 | chr2:19531230-19534483 REVERSE | Aliases: T30B22.10(evalue: 5e-55, score=211) genbank/nr: Sodium/calcium(evalue: 1e-55, score=219)">
      <seq>gtttttggaaatagcaagttgaagttcctattcgatctcaattacaagcaatagtccggtggtgctcactccatgcacgtcttcttcttgtatatactcaccacatttctgtaaactactatctcacaaatcagttcaagaccccatttttatccccttttttttcaatcactaaacggtacaatatggagcaaaatggatattgatagttgtatatgcctatattgtccgcatccgtccgaaagaataatctttctggggcttgaactgcgaagagaaaaatatttatcaagatgacctcgcttggaaactataccactcacagcaccaatggacattcaaatatccttagacatgaaaaatgtgatgcttatttacttttccatctagaaactgctcttggtggaggctttcgaactttcttgtattttttgggtcttgcctattgctttattggattgtcagctataactgctcggtttttccggtccatggagagtgttgtcaagcatagtcggactgtagagacgatagatcctctcacaaacacaaaagctgtcaaaaatgaaaaggtgtggaattacacaattgcagacatcactctactggcatttgggactagttttccacagatctcgctagctacaattgatgcaatacgaaatattggaaaattatatgctggaggtttaggtccgggaacactcgttggatctgctgctttcgatctatttccaatacatgctgtttgcgtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86990" stop="81722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86680" g_stop="86476" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="226" r_length="205" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86475" i_stop="83650" i_length="2826">
            <donor d_prob="0.296" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83649" g_stop="83189" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="687" r_length="461" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83188" i_stop="82092" i_length="1097">
            <donor d_prob="0.838" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82091" g_stop="82022" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="688" r_stop="757" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-U327953" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86680" e_stop="86476"/>
          <exon e_start="83649" e_stop="83189"/>
          <exon e_start="82091" e_stop="82022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCCCTATTCGATCTCAATTACAAGCAATAGTCCGGTGGTGCTCACTCCATGCACGTCTTCTTCTTGTATATACTCACCACATTTCTGTAAACTACTATCTCACAAATCAGTTCAAGACCCCATTTTTATCCCCTTTTTTTTCAATCACTAAACGGTACAATATGGAGCAAAATGGATATTGATAGTTGTATATGCCTATATTGTAAGTTCCCCATCGACCCATTTGCAAATCTTGGATTTATTCTCATTTTTTCTTGTGCTCCAACAATCTTGGAATCTGTGGCACAGTGTTTTATGTGCATTTCTTTCATTTACAAGCATGAGTAAGAAAATTTGATCCCTTTTAAGCTATGTATTGAAAGTCAAACTTTTCAATTGTGTATTGTGGTTGATGACTGAGTACAAAATTTCCTTCCTTTAAAGCTATATTTTGGAAGTTAATTTTTGAATGGTTATTGAAGCTGATGGATGGGTGCTTTGTAATTGAATTTTGGATATTCGGGGTGTAGAGTAGACCTAGTTTTGTTCACTTTCTTTTTCACCTAAAATTGTGTTTCCATGTCTATTAATCATTGGTTTACTGAGCTGAAGGTCTATCGGAAACATTATCCTTAGATGTCCATTAATCATTGAAGCTATGGGCCCATGGCTAATAGTTTAAGTGTTCCCAATTCTTGAGAACTGGATTTTCTGATACTTGGAGAAAATACTTTCTTTTTCTGTATTTGGTGACCATGCTCTTAAAGACTTGCAGTCCATATAAGTGAGTTATTTAGGTGTCTATTAATCATTGAAGTAAGTTATGGGCCCATGGCTAATAGCTTAAGTTTTCCTAATTCTAGAGGATTGCATTTTCTGATGTACAGGGACCTTAAAGAAGCTTTTTTCTTTTTGTATTATCTGACCATGCTCTCTTGTAGTCTATATTAATGAATTTCCATTTTGGGTTATCATAACTTTCTTTTATTCTTGTACTCTGTAAAGACACTATTTTTATTCGTTACGCGAAATTTATAGAAGATTGGCATTTGTGTTGTAGATAGTCGAGACAATAATTGCAGTGATTATTGAACAAAGTTAACCATAGTTCTTGTAGCACTTTTTTAAGTTTTGTATCTCCTTGAATTCTTTGTGCAGTAACTTCTTTATATTCTAACTCCCTTTACTGAAAATCCTGGCCCCATCACTGCCTAGATTAGTGTATGAATGGAATTGGAAGTCTTTGGGTTGTCATGAACCTTTCACATAATTAGGACCACATGAAGGAAAAATGATGTACCAGAGAGTTCTGGTGCCCTGAAAAAAAGTTCAGTTTAGTTGTGAATTCAGATTGTTTAATTTCTTTGTGTTTGATCACCAGCAAGTTTTCTCCAGAATTGGGAAGGATAATGCATGGCAGCATTTCTGTTCTTAGAAACTAGTGGACTTGACGTTATTACGAGCATTTGCATCATAGAAATAGAACAAAATCTTCCAAAAGCCAAAAAATAATAAAGTAAAGGCAAGATTAGGGAAAAATGATAAATGTGCTGATTAATGTCATAGTTTTCTTTTCTATTACTTTGGATCATGTCTAACTCCTTTTGTTGGAGAATGCTCTATTAAACGCCATGTCAGTGTCACTTGGGTTCCAATAGTTCCTACAAACAACATGATTGAGAGAACTGATTACAGAAAGATTTATGGAGATACTCTATTCTCAAACTATTATTCTACACAACTAGTATCTTAGGAGTAATTGTTAAGGAAGGAAAATAAGTTGCTGGCAATACCCTGAATTTAAGTCTAAACTAGGAAAGTGAGGTACTGATATGATCATGAGCGGAGCTTCTAACCTATAGGGGAGAGTTTTAGGGAGTAGACACTTGAGGTGCACTAGAATTGAGATGTTGTCTGGGAGCAACTTATGTGCTGTCAATAAGACAAATATGGTTGCCAATGCCATTTCAGGAAATGTTAAATTGGGTGATATTGTGCTGGCATCATTCTTGGAGGTTTACAGATCTCTACTTCAAATGTACAAGACACGTGAACCTTGATGTTAGAATGAATGGTAGAGTCAATTGGTCAAGCACTCATTTTCATTGTGTTCCTATGCGTGGAACTTAGCTGTTTTTGGCTACATCATAGTTGTAATTGAACAAGAACTCAGAGTAATTGACTGAATTATGGCATTCATCTTTCACAAGTTGATTGTTTTGCTCATCACTCCAATGATTTGATGCTGAGCCTCATGTACTGTTAGTCCTAGGCCCAACAACCCTTGATGAGAAAGTCAACACTGGTATTTGCCTTTTATATTGGTGGGTATCTTAGGTCAGCACCGGCATAAGCCACTTTTGATATCTTATATTTAAGAATGTAAGTCGTGTCCTGGTCTACCTTATGCCTCTTCATTCTTTGGGTTAAGTTAAGCCATGTGGTCCTTTAATCAAATCGTTGTGTTATCCTGAGATCTAAGCTTGGGAGCTTCTTCTCAGAAAGCAACTGGTGTAATTTGTTAAAACCCTTCTATATTTTAATTTCTATCTGCACTACTCTCTTTCACGATGTCTAATGTCATCAATAGTAACATACCCAGTGTAATCCCACATGTGGGGTATGGTGAGGGTAGGATATAAGCAAACCTTATACCACAATTTCATCATACACTTGAATTGATTAATGATATGTTGAGGAAGGAAAATTCATGCTTGTCTCTGTTGGTGCCAAAATGATTGCTCTTGTACAATTAACTTAGAAATCAATCCGAGTGATATAATGGCTTTCTTATGTAATTGGACATGCTTTATTTTATAGTATTAAAACTTCATGATGCACATGTTTGTGCTACATCTGTCCCCTTGCGCACTGACTTAGTACACGGGTTTTTGTGGCCTGAAGTACAAAAGAAACTCTTGGGGATCTTTTTGTATATATATGGTGCTATGTATTCTTCAGAGTGCTACTATTGTTGCTTGATGTAATGAGAACTGTATTAAGATTGTCATTAGACTTTAATTATCAACAACTGTTGCACAAATGGCAGGTCCGCATCCGTCCGAAAGAATAATCTTTCTGGGGCTTGAACTGCGAAGAGAAAAATATTTATCAAGATGACCTCGCTTGGAAACTATACCACTCACAGCACCAATGGACATTCAAATATCCTTAGACATGAAAAATGTGATGCTTATTTACTTTTCCATCTAGAAACTGCTCTTGGTGGAGGCTTTCGAACTTTCTTGTATTTTTTGGGTCTTGCCTATTGCTTTATTGGATTGTCAGCTATAACTGCTCGGTTTTTCCGGTCCATGGAGAGTGTTGTCAAGCATAGTCGGACTGTAGAGACGATAGATCCTCTCACAAACACAAAAGCTGTCAAAAATGAAAAGGTGTGGAATTACACAATTGCAGACATCACTCTACTGGCATTTGGGACTAGTTTTCCACAGATCTCGCTAGCTACAATTGATGCAATACGAAATATTGGAAAATTATATGCTGGAGGTCTGTTGAGGATTTTCTTCTCTGCATTCAGAATCTTGACTTAGTTGGTGTTATAATTTTTCTTCTTATTCATAATACGACGTAAGAAAGCGTGGCATCAAATTTTCAGATTCCTCTCTTCTTCATAATTTTTGTTTGTGTTACAATTTTTCCTTTGTTGAGGTTTGCCATATAATTATATGCTCCTTTAAAAAAGCATGACATCAAACTTTCAGTTTCCTCTTCTCCTATTTTTTAAATGTAGCTAGCCAAACTTTTCTAGTTGTAATGAATACTAAAGTGAGCCATTGATGTGTGTGTTTTTAGACTGTCTTGTGATGTCTGGGAAAGATGCACTCTGAGAGATATTTGTCCCCACTTATTGTGCTTGTGGTGATCTCATCTTGGACATTGTTGAGTGAAGGAGGCGAATAAATGACAAGCCACAACTACAAGATGTCAGGAAGTATTCCTCACCAATGATGTCCCTACACTCTCCCGCCCTCTGTTAAGGAACCTTAAGACTTGACAATGAAATAGTTGACCTTCTAATGATTTTATCTTGAGTAACTCTCAATATGATTGAGTTCAGTATGGATATTGATTTTTACAGAGTAGATTAGACCTTTCTCTTTTAATAATTTTCTTGTGCTTATATTAGTGGTTACCTGTTAATATGTTCTTCACCCCATGATGTTAGTCTCTGAAGTCATGGAGTAAAAATATATTCCATTTTGACCATTAAAATAGAAAACACCAAATATTAATGTCTGCAGCCTGCGAATGACAATGAGTTACTGGAACCTTAAGAGATGCTGAGATAATGACTATGAAATCAATAGTTGATTGGTTAATATTTATATAAAAAAAATTTACATGTTGATATACTTTATATTATGGCCAGTATTATATATAGTTCCATGAGTTATCTTTTCCCTTTTCTTTTCTCTTTTAAGAAGATAGAATGTGAAAATCTAATTTCTATTGGAAAAATTTGCTCGTACCTGTTAGAACATTTATGTATAATGTATCATTTCTACTAGATACCAGAAAATTTTCTGAATCATGGACATCCGTTGTCTTGCTAATACACCCTTGCTACAATTTGACTTGTCCAGGTTTAGGTCCGGGAACACTCGTTGGATCTGCTGCTTTCGATCTATTTCCAATACATGCTGTTTGCGTGGT</genome_strand>
        <mrna_strand>AAGTTCCTATTCGATCTCAATTACAAGCAATAGTCCGGTGGTGCTCACTCCATGCACGTCTTCTTCTTGTATATACTCACCACATTTCTGTAAACTACTATCTCACAAATCAGTTCAAGACCCCATTTTTATCCCCTTTTTTTTCAATCACTAAACGGTACAATATGGAGCAAAATGGATATTGATAGTTGTATATGCCTATATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGCATCCGTCCGAAAGAATAATCTTTCTGGGGCTTGAACTGCGAAGAGAAAAATATTTATCAAGATGACCTCGCTTGGAAACTATACCACTCACAGCACCAATGGACATTCAAATATCCTTAGACATGAAAAATGTGATGCTTATTTACTTTTCCATCTAGAAACTGCTCTTGGTGGAGGCTTTCGAACTTTCTTGTATTTTTTGGGTCTTGCCTATTGCTTTATTGGATTGTCAGCTATAACTGCTCGGTTTTTCCGGTCCATGGAGAGTGTTGTCAAGCATAGTCGGACTGTAGAGACGATAGATCCTCTCACAAACACAAAAGCTGTCAAAAATGAAAAGGTGTGGAATTACACAATTGCAGACATCACTCTACTGGCATTTGGGACTAGTTTTCCACAGATCTCGCTAGCTACAATTGATGCAATACGAAATATTGGAAAATTATATGCTGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAGGTCCGGGAACACTCGTTGGATCTGCTGCTTTCGATCTATTTCCAATACATGCTGTTTGCGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331247" ref_strand="+" ref_description="SGN-U331247        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr4:1067280-1068785 REVERSE | Aliases: None(evalue: 6e-31, score=132) genbank/nr: hypothetical(evalue: 1e-39, score=167)">
      <seq>gagtggcgatcttttttgattttgagaatagtaccccaaatatccatagatacttgtcgacaattttgcttaatcgccattgatttcaaagatccagatcttgttcttcattgataatttaagctgtttatagatgaattgaggtgaatttgagcagatttgaactccattgtagggtgttttcatgaagtttcaatgtcgcctaagactctagattcacgtcacgccattgaatcgtgtacgtatcatctccattcttggaaaccctttcagtttccgtctccgaattctaaaaccctagatttagattcgccaaaaacttactccccgtcgacccatggtgggctgcatacgaagcgtcaatgtagagcggatcgaacaacttcgattccaattgaagctcttgatatgtcaaagttaagtttatttgaggaggataagcctttatcggttcataaacgggagaatcttaggttgatagctggtaagaggcggagacgtgggtctcgttcggtttccgggaggagtagtgatcggagtggaactagaagacggtgttgctcggttggagcttcagcagcttatgggacttgttcggattttcctgttgctgcggggactgattcaagtggggaattgttcgtgaatggggatatgcattggactttggatgttagtgaggttacaaagagtttaaggaaggagaaggaaggtggtggggttggtgaaagagagaataatttaaatggtttgtctgtgcaaagtgggaattttgaggggttgggtaatgagtcagggtatgggagtgaaccggggtatcgtggtgatgcagagtttggatatggtgatgagtttgatgaagaagaagatgatcaacggctttccttctggggcgatgaatttggagcactctctaggatggagaaagttggagagaactcgttgcagaaggtgcaccatagatgtcggcggaggaaacaagattgtcgaatggtgatcccttgaggtttgctgatgttgatgagtgtgattgatagccggttccaagattttgccagtgatacaatcgtgtaattcatgagcagaacctttttgggtttgaatacagaatctgctgctgtaaatatgaacaaatgatgttaattgttcatgtcttattgtcatggtacccctgatgttcaccatggtatgttttggttggggattagacaagttagtatattgtactatttaaggggtcgtttgatagtgtgtaagagtagcgttgaatattgtgtattagtaatactgtgattatcttttgttgtgttctatttcttttggtatattaaacataacatgttttgcctacaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="91891" stop="87544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91592" g_stop="90686" g_length="907"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="907" r_length="907" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90685" i_stop="88287" i_length="2399">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88286" g_stop="87844" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="908" r_stop="1350" r_length="443" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1352" polyA_stop="1370"/>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-U331247" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1350</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U331247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91592" e_stop="90686"/>
          <exon e_start="88286" e_stop="87844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTGGCGATCTTTTTTGATTTTGAGAATAGTACCCCAAATATCCATAGATACTTGTCGACAATTTTGCTTAATCGCCATTGATTTCAAAGATCCAGATCTTGTTCTTCATTGATAATTTAAGCTGTTTATAGATGAATTGAGGTGAATTTGAGCAGATTTGAACTCCATTGTAGGGTGTTTTCATGAAGTTTCAATGTCGCCTAAGACTCTAGATTCACGTCACGCCATTGAATCGTGTACGTATCATCTCCATTCTTGGAAACCCTTTCAGTTTCCGTCTCCGAATTCTAAAACCCTAGATTTAGATTCGCCAAAAACTTACTCCCCGTCGACCCATGGTGGGCTGCATACGAAGCGTCAATGTAGAGCGGATCGAACAACTTCGATTCCAATTGAAGCTCTTGATATGTCAAAGTTAAGTTTATTTGAGGAGGATAAGCCTTTATCGGTTCATAAACGGGAGAATCTTAGGTTGATAGCTGGTAAGAGGCGGAGACGTGGGTCTCGTTCGGTTTCCGGGAGGAGTAGTGATCGGAGTGGAACTAGAAGACGGTGTTGCTCGGTTGGAGCTTCAGCAGCTTATGGGACTTGTTCGGATTTTCCTGTTGCTGCGGGGACTGATTCAAGTGGGGAATTGTTCGTGAATGGGGATATGCATTGGACTTTGGATGTTAGTGAGGTTACAAAGAGTTTAAGGAAGGAGAAGGAAGGTGGTGGGGTTGGTGAAAGAGAGAATAATTTAAATGGTTTGTCTGTGCAAAGTGGGAATTTTGAGGGGTTGGGTAATGAGTCAGGGTATGGGAGTGAACCGGGGTATCGTGGTGATGCAGAGTTTGGATATGGTGATGAGTTTGATGAAGAAGAAGATGATCAACGGCTTTCCTTCTGGGGCGATGAATTTGGAGGTATACCGTGCAATCTGCATAAAGCCCTTTCATTTAAATATTTGTAGTGTCAGAATCAGCTTGTGCTAACCTTGACTATTCCTATGGATACATGGTAGCTCCCACCAATACAGTTAGCGTGTAACTTAAGCTTTTTGCCTGCTGAGATCTCATGGTTCTCCTCCTGCTTCATTGATTGATTGCTGAACCACACCCTAGGGTGCGTCCTGAATTATGCAATAAGCCGGAACTAGTTGGTTGTAGGTTAATGAATCATTATATCCATTTAGCTTCATTTGGGACGGTTGTCTTGATTGTTGTATCGTACTACTTAGATTTGCTCGAAGTATTTACCTGTTGAGACAAAGATTGACGTTCTGATCTCTGTCAGTAAAAATGGACTCTATATGGAATGCCATAGTTTTAAGAGTTACTGTTTGATATGTTCTATCAGAAAAGTCAGTTTCCTCCTGTCCGAAGAGTTAGACTAGACAATGCCAATGCCTTGTAGTCTCGGAAAGAAACATGTTAATAGCTTCTTTTAAGGATGTATGGCTGCTTGATGAACTCCTATAAGAAATATTGTTCAGGAAGTTATTTTTTTTGATTCATAACCATTTTCATGTTTGTGATACATATGTTTTTTCTGTGGAGAATCTTTATATTATGATTCTGCTAACAGAGAATATATATATTATGACACTCACGGAGAAGTTATTCCCTGTCTATAGAACACAAATACAGTACTGCAAGTTGGAATGGAAAGAAGTAATTAAGCAAAGTTGTGCCAGAACTATTGATGTTAATTCATTTATGCATTTGGTGGTTGATATATTGTTTTATTAATGCTTCAGCATTTGAAACAAATATGAGAGAGACCCGAGGGGGGGGGGGGCGGTCTGTGTGGAAGTTATTAAACTTTGGTTGGGATATGCAAATGATGGGTTTCTAATGGCTGATAGAAACATGATAAATGAAATTACAGAACTTGTAAATGTACATGGCACTAATCCAATGATTGGAACGGAGGATTAAACTTGGTTTTAGAAGTTGAGCTAGAAGTATGCCGTGAAGTTGTCAAGTTTCAATTATATCCCAGTTGGAGCTTTACAGTGAGCGTGGACATGTTTAAGATTTCAAGTGAAGTCTGGGTGAACTGTATATATTCTACTTGTGTATGTCTTAAAGTCCACGGTTGCTTTACTTGCAGTTGGTAGTTGTCTGTGACTTCTAACTCCTTTCCTTTTGATAAGGTAAATAATTTTTTTCAATGGAACGTTTACTAACTACTTCATCAAACAAAAAAGGTAAATACTTTAATAATACTGTAATAGTGTGACTTCTAACTTATATGTTGCTTAATATAGTCTACAGACAGTCTGCTCTTCCGATTCTTACTTTTCTGATGAGTGGTACCAGTGGTCTTATTTCTGTTTGTTTACAAGCAGGATTAAGACTATTATCTGCTTTGTTTTTCACTGAAGTCCTGTTAACAAATTTGTTCCAAATCAGTGCTTAAACTACCGTGTATAATCACTTGCCTTATGACACAATTAACTGCTTGTGCTATACTAATGGTGGCTCTTATATAGTTATAGCTGATATCAATGACTCATTAACCTATATTGACTTTTGAGTAGGGGTGGAAAGGGGATACAAATGATAGGGAAGCGTAAGGAGGTATTTTGTCATTCGTTGGAGTTAGCAAGTAAAGTTAATGCCTTTCAATTCCTTCGACTTTTCAAAGGTTAGAGATAGATATATAATGTGGAAATTCTAATTGGTCTCGGTGGTCCTCTGCTGAGATCCAGGCCTTCATTCCATCTTCATGATTCAATTCTTACGTAATCAAAATCGGTTTCTCATCCTTACTTTTTTACCCCATTGTTTGCAATCCTCCCTTTCTAAGGAAGTTCCAGTTTTTCTGGAAGATAGGAAACAGATAATGTCGCTCCAACCCCTTTTTCCCTTTGATTTAGTATAACCAGGGTAGATCTAGCCTTGTTTAACTGGGGAGTCAACTGACACCCCTTCTCCAAAAGTTACACTGCATAGATGGATTAAAATACTCCTAAAAACTTCATGGGGCTTCTTTGTGTGTTCACTTTTTTATATTTAGGATTTCTTACTGAAAAATTCTGGATCTACCATTGGTATAACCATGTTAACATGTATGCTGTGTTCTTTACTAGTGGCAGGTGGTTAAGATGTTTCTATAAGCAGACTGTTTTTGTTGAGATCTCAATAGAAGTGGAGGGCTGCATGATTCTAAGGCAGTTAGATTGAGCTTGGTAGTTGATCAGTAGTACTACTTTACTTGGTGCTTGTGTATGCACTCATGGCTGCTAATTGAGTAGAAAGCCCACCTATTGTGTTTACTTTATTGCTTAACTTGTTTCTTTGGTCTCTTGTACTAACAGCACTCTCTAGGATGGAGAAAGTTGGAGAGAACTCGTTGCAGAAGGTGCACCATAGATGTCGGCGGAGGAAACAAGATTGTCGAATGGTGATCCCTTGAGGTTTGCTGATGTTGATGAGTGTGATTGATAGCCGGTTCCAAGATTTTGCCAGTGATACAATCGTGTAATTCATGAGCAGAACCTTTTTGGGTTTGAATACAGAATCTGCTGCTGTAAATATGAACAAATGATGTTAATTGTTCATGTCTTATTGTCATGGTACCCCTGATGTTCACCATGGTATGTTTTGGTTGGGGATTAGACAAGTTAGTATATTGTACTATTTAAGGGGTCGTTTGATAGTGTGTAAGAGTAGCGTTGAATATTGTGTATTAGTAATACTGTGATTATCTTTTGTTGTGTTCTATTTCTTTTGGTATATTAAACATAACATGTTTTGCCTA</genome_strand>
        <mrna_strand>GAGTGGCGATCTTTTTTGATTTTGAGAATAGTACCCCAAATATCCATAGATACTTGTCGACAATTTTGCTTAATCGCCATTGATTTCAAAGATCCAGATCTTGTTCTTCATTGATAATTTAAGCTGTTTATAGATGAATTGAGGTGAATTTGAGCAGATTTGAACTCCATTGTAGGGTGTTTTCATGAAGTTTCAATGTCGCCTAAGACTCTAGATTCACGTCACGCCATTGAATCGTGTACGTATCATCTCCATTCTTGGAAACCCTTTCAGTTTCCGTCTCCGAATTCTAAAACCCTAGATTTAGATTCGCCAAAAACTTACTCCCCGTCGACCCATGGTGGGCTGCATACGAAGCGTCAATGTAGAGCGGATCGAACAACTTCGATTCCAATTGAAGCTCTTGATATGTCAAAGTTAAGTTTATTTGAGGAGGATAAGCCTTTATCGGTTCATAAACGGGAGAATCTTAGGTTGATAGCTGGTAAGAGGCGGAGACGTGGGTCTCGTTCGGTTTCCGGGAGGAGTAGTGATCGGAGTGGAACTAGAAGACGGTGTTGCTCGGTTGGAGCTTCAGCAGCTTATGGGACTTGTTCGGATTTTCCTGTTGCTGCGGGGACTGATTCAAGTGGGGAATTGTTCGTGAATGGGGATATGCATTGGACTTTGGATGTTAGTGAGGTTACAAAGAGTTTAAGGAAGGAGAAGGAAGGTGGTGGGGTTGGTGAAAGAGAGAATAATTTAAATGGTTTGTCTGTGCAAAGTGGGAATTTTGAGGGGTTGGGTAATGAGTCAGGGTATGGGAGTGAACCGGGGTATCGTGGTGATGCAGAGTTTGGATATGGTGATGAGTTTGATGAAGAAGAAGATGATCAACGGCTTTCCTTCTGGGGCGATGAATTTGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTCTCTAGGATGGAGAAAGTTGGAGAGAACTCGTTGCAGAAGGTGCACCATAGATGTCGGCGGAGGAAACAAGATTGTCGAATGGTGATCCCTTGAGGTTTGCTGATGTTGATGAGTGTGATTGATAGCCGGTTCCAAGATTTTGCCAGTGATACAATCGTGTAATTCATGAGCAGAACCTTTTTGGGTTTGAATACAGAATCTGCTGCTGTAAATATGAACAAATGATGTTAATTGTTCATGTCTTATTGTCATGGTACCCCTGATGTTCACCATGGTATGTTTTGGTTGGGGATTAGACAAGTTAGTATATTGTACTATTTAAGGGGTCGTTTGATAGTGTGTAAGAGTAGCGTTGAATATTGTGTATTAGTAATACTGTGATTATCTTTTGTTGTGTTCTATTTCTTTTGGTATATTAAACATAACATGTTTTGCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323320" ref_strand="+" ref_description="SGN-U323320        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: AT1G44130.1 | Symbol: None | nucellin protein, putative, similar to nucellin GI:2290202 from (Hordeum vulgare) | chr1:16789948-16791758 REVERSE | Aliases: T7O23.17, T7O23_17 (evalue: 3e-111, score=399) genbank/nr: gi|56692305|dbj|BAD80835.1| nucellin-like protein [Daucus carota] (evalue: 8e-116, score=420)">
      <seq>aaagtcttctctttccccgtgctttcttcctacacgtgaaattgacggagtccccatttttctcattcgccattaacgcttcagtccaaacttcaccttccccagctcccatttttctacaatctcttcatatatagttacttgcttgacccatttatttttttttttggtgatttttgagaaatttttttataaatctttctgttcccaaaattacctgttcaacctagaatcaatcttatttgtttgatcggaaaatcaattatgagaggaaaatgggaagtagtacgaatttgggtgttgtatttactgcttctatctgagttctttcagggatgtttttctgcttttaacctgcctcgtccaccatggaagaaacagtcaaattttggttcctctgttgtttttccactttttgggaatgtgtatccaaaagggtattatcaggtgacactcaatgtaggccaaccccccaaaccttactttcttgacattgacacagggagtgatctcacttggctccaatgtgacgcaccttgtgtcaaatgtattccagcacctcacagtccgtacaaaccgaataaaaatgttatcaagcataaggatcccatttgtgcatcccttcactcacctgcaaaccatccccgttacagtcctgacgatcaatgtgactatgaggttgagtatgcggatcattgttcatccttgggagtgctggtcagagacgcatttccagtaaaattcaccaacggtagctccattgctcctcctctggtgttcggttgtgggtatgatcaagaagtcccagcctctgagcatgcaccttatacggatggaattcttggcctagggaatggaaaatcaagcatagtatcacagttgagtagcttgggttttatccggaatgtagtaggtcactgtttaagcgggcaaggtggaggttttcttttccttggagatgatgttgtcccgtcttctgggattgtttggtcacctatcgtccgtgaatcttcagagaaacattattctttgggaccggcagatctcctttttggtgggcaggcaactgggatgaagagtctaccgataattttagacagtggaagtacctttacctacttcaattccgaagcttacaaaactctgttgtcttcgattaagaaaaacatagatgcaaagcagctgactgatgcagtgaacgacaaaagtttgcccgtctgctggaaaggctccaaacctttcaaatcccttaaagatgctacgaggtacttcaagccattgacacttagtttcacaaaagctaagaatattcagcttcaactgacacccgaagcttatcttattcatactaataagggcaatgtatgcttagggatactgaacggttcggaggttggattaagagctgttaatatcatcggagatatttctatgttagacaaaatggtgatttacgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="104368" stop="109022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104668" g_stop="105104" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105105" i_stop="106827" i_length="1723">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106828" g_stop="106945" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="555" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106946" i_stop="107087" i_length="142">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107088" g_stop="107314" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="782" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107315" i_stop="107603" i_length="289">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107604" g_stop="107837" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="783" r_stop="1016" r_length="234" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="107838" i_stop="107930" i_length="93">
            <donor d_prob="0.605" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107931" g_stop="108069" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1017" r_stop="1155" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="108070" i_stop="108145" i_length="76">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108146" g_stop="108340" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1156" r_stop="1350" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="108341" i_stop="108427" i_length="87">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="108428" g_stop="108500" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1351" r_stop="1423" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="108501" i_stop="108687" i_length="187">
            <donor d_prob="0.421" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="108688" g_stop="108722" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1424" r_stop="1458" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-U323320" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U323320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104668" e_stop="105104"/>
          <exon e_start="106828" e_stop="106945"/>
          <exon e_start="107088" e_stop="107314"/>
          <exon e_start="107604" e_stop="107837"/>
          <exon e_start="107931" e_stop="108069"/>
          <exon e_start="108146" e_stop="108340"/>
          <exon e_start="108428" e_stop="108500"/>
          <exon e_start="108688" e_stop="108722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTCTTCTCTTTCCCCGTGCTTTCTTCCTACACGTGAAATTGACGGAGTCCCCATTTTTCTCATTCGCCATTAACGCTTCAGTCCAAACTTCACCTTCCCCAGCTCCCATTTTTCTACAATCTCTTCATATATAGTTACTTGCTTGACCCATTTATTTTTTTTTTTGGTGATTTTTGAGAAATTTTTTTATAAATCTTTCTGTTCCCAAAATTACCTGTTCAACCTAGAATCAATCTTATTTGTTTGATCGGAAAATCAATTATGAGAGGAAAATGGGAAGTAGTACGAATTTGGGTGTTGTATTTACTGCTTCTATCTGAGTTCTTTCAGGGATGTTTTTCTGCTTTTAACCTGCCTCGTCCACCATGGAAGAAACAGTCAAATTTTGGTTCCTCTGTTGTTTTTCCACTTTTTGGGAATGTGTATCCAAAAGGGTATTTTCCTTTTCCTCTACTCCTTTTTCTCAATTATCTATACCTTGTTATTGTATGCTCTGTGCTACTTTGCTATTAGCTGTCGTGTTTTTCTTTTAAGTATTGTTTTGTTTTGCTTGAGCCGAGCTTCATTCGGAAACAGGTTTGCATACACTCTATCCTCCTGGGACCCAACTTTATGGGATTTTTTGTTGTATCTCTGTAGTATCTGCTTAAATTGCTTATGGGTGTCAATGAATCTTCTGCAAAAAAAAAATGCTGATTAAACAGTTTACAAATTCTTAAAGGATTTTTTTAATTCTGTCTGTAGCAATAAGGACATGATTTTTGTTGGAGGTAGAGTTAGTATTTGATCTCCATGGGTTCAACCTTAGAGATTTTTTAGCTTTGAACTTTTATACGTAAATTTATGTTTCGTGTCGAAGTTAAATAGCTGCATTTGCGACTGATGCTTGTAAAGATTATATAAGTAGTTTTATCTATATTTTTTCTCAACTTCTGTGTATTGATTTGTTTATTTGTGATCTGTTACTTTTCTTCAGTAGATCGAATATTGGAAGGGCTCTTTTGGCGTATTCTTTAATTTGATAATTATCTTGCAAATTTTTCAGCATTTTTGCGTGAAAATTTCGTGTACATTTCCCATATACTTGAATAGTTTGGTGTGGTTCTCCATTGAAGTATCCTATGATTTCCTAGTTTATGTACTTGAGACTTTAATCTGACCTGAAGGTTAGAACGAATTGTAAATCTCTTTCAAATGAATCTATTTGATTTATCTTTTAGACAGGAAGAACTTGCAATGGTATTTCAATTTCAATTGGAACATGGGTTTGATTCACACTCCGTGACTGAAGAAAGATGTATAACAGAGTCTTTGTCTAAAGAAATGAATTGAGAAAGGACAGATGTATCCGGGTTTTTGATATTGAGTAGATGAGAAGTCAGTCTTTTATAAGTGTGTCTGGAAATTATGACTTATTGGTCTTATAATAATGATGGTTCAACTAGGGGGTTTCTCCGTGCAAATATTTTCTCAGGGGTCTGTGCAATTGAGGTCCTCACTGATCCTTTTCTCATTCTATACAAGCAAAGAGGCTCATTAGCAAATTTTTCTTCTCTTTACTACTGATACATGTAAAGAGAAGAAAAACTTGCACGTGGGCCTCTTTACTGGTATAAAATGAGAAAAGGAGCAGTCGGGACCCCTGTTGCACACTTCATTCAGTAAATATTTGCACAAGGACGCGTCCCTTGTGGAACCATAATCACCATAGACCAATATATCATTCTTTCCAGAGACATCCCTAGAAGACCGACTTCTCATCTTTTCAACAAAGATAAAGGAAGAACTTGCATTGTTATTTCAATTTGAACATAGGCTTGATTCACCATCCATGATCGGAGAAAGATTTATCGTCTGAAAAACTGGAGTCTTTGTCTAAAGAAATGCGTTGAGAAAGGACAGATGTATCTGGGTTTTGCTGGGATGCAATGGGCTTGCTTACACAAAACATTACTCTATTCAATCTAACTTACATCAGCTAGAAATTTTATACGAGTTTTGGTATTGGGCATTAGTTCTTGGTTCACCATGAGAAGATTTGTTGCAAGTTTCTAGAATTTGGATTTCCTTAAAGTTGTGTTTGAAATTCGTAAAACTTGCATATTACTTGTTTCCTGTTCTCTGTCTCTTAAACTCGTATGCGCAATTCACATTCAGGTATTATCAGGTGACACTCAATGTAGGCCAACCCCCCAAACCTTACTTTCTTGACATTGACACAGGGAGTGATCTCACTTGGCTCCAATGTGACGCACCTTGTGTCAAATGTATTCCAGTGAGTACATCTTTTTATTCCTTCTGCAGCCTAGCTCTTTCAAGTTACACGGAAGATTATTAATATGAATTCAAATCCAAAATCATATGTAAGTTGTCAGAAATATATTTCCTAATTTCTGCATATATGTATGACATTACAGGCACCTCACAGTCCGTACAAACCGAATAAAAATGTTATCAAGCATAAGGATCCCATTTGTGCATCCCTTCACTCACCTGCAAACCATCCCCGTTACAGTCCTGACGATCAATGTGACTATGAGGTTGAGTATGCGGATCATTGTTCATCCTTGGGAGTGCTGGTCAGAGACGCATTTCCAGTAAAATTCACCAACGGTAGCTCCATTGCTCCTCCTCTGGTGTTCGGGTAAGAAGCTGATAAACACTCCTTAAAACTTAACCTTTAAAATTGTCAACCAACAAAGAGAATGTTACTTCTCCACTTTCACTGCTAAAAAGATTGGAATCACAACGGAGAAATCTGTTGCTATTTCTATTTAGCAACGAGTTAGGGACGGATTATCAAAAAAAAATTGCTAGCTACGAGCAGTTTAGTGATGAAGTTTGTTGCTAATTCTAGTTTTTTTTTTGTAGTGTTTATTCTGTTACTGAAATTGTGGTGCTTGTGATTCATGAGTTTGATTTCCCTTCTGTAGTTGTGGGTATGATCAAGAAGTCCCAGCCTCTGAGCATGCACCTTATACGGATGGAATTCTTGGCCTAGGGAATGGAAAATCAAGCATAGTATCACAGTTGAGTAGCTTGGGTTTTATCCGGAATGTAGTAGGTCACTGTTTAAGCGGGCAAGGTGGAGGTTTTCTTTTCCTTGGAGATGATGTTGTCCCGTCTTCTGGGATTGTTTGGTCACCTATCGTCTGTGAATCTTCAGAGTACGTTTTATCTGTAGTTGGCGCTTTTGTATATGAAAATTTGCACTTAGCATGCAAGATGTGAATAAACTTTCTGGATTACTATCGTTTCAGGAAACATTATTCTTTGGGACCGGCAGATCTCCTTTTTGGTGGGCAGGCAACTGGGATGAAGAGTCTACCGATAATTTTAGACAGTGGAAGTACCTTTACCTACTTCAATTCCGAAGCTTACAAAACTCTGTTGTCTTCGGTAAGATCAGAAAAAAACTACATCATATATGCTTATCATCTTTTTGGCTTAGGACTTACAATATTTCTGATTTCAGATTAAGAAAAACATAGATGCAAAGCAGCTGACTGATGCAGTGAACGACAAAAGTTTGCCCGTCTGCTGGAAAGGCTCCAAACCTTTCAAATCCCTTAAAGATGCTACGAGGTACTTCAAGCCATTGACACTTAGTTTCACAAAAGCTAAGAATATTCAGCTTCAACTGACACCCGAAGCTTATCTTATTCATACTGTAAGTGCTCTTGAAATCACTCCGTGAATCTTATAATGCAGCTTAAAAGTATAGCACATCATGATACTGATATTTGTATCCTCTCAGAATAAGGGCAATGTATGCTTAGGGATACTGAACGGTTCGGAGGTTGGATTAGGAGCTGTTAATATCATCGGAGGTATGACAAAACGAGGCACCTTTCGTTTTGTGCTGTTCAAAATTTTTGAGGTTGTTTTCTCCCAAGAAAATATACAACAAAAGAACACACACAACCAACATTTATCCGAGGAGAAGCACATCAGTATCGAAATTGTTGTCCACATTTTAACCTTCTTTCCACATTTTCTCTGGGTTTGCTTATGCAGATATTTCTATGTTAGACAAAATGGTGATTTACGAC</genome_strand>
        <mrna_strand>AAAGTCTTCTCTTTCCCCGTGCTTTCTTCCTACACGTGAAATTGACGGAGTCCCCATTTTTCTCATTCGCCATTAACGCTTCAGTCCAAACTTCACCTTCCCCAGCTCCCATTTTTCTACAATCTCTTCATATATAGTTACTTGCTTGACCCATTTATTTTTTTTTTTGGTGATTTTTGAGAAATTTTTTTATAAATCTTTCTGTTCCCAAAATTACCTGTTCAACCTAGAATCAATCTTATTTGTTTGATCGGAAAATCAATTATGAGAGGAAAATGGGAAGTAGTACGAATTTGGGTGTTGTATTTACTGCTTCTATCTGAGTTCTTTCAGGGATGTTTTTCTGCTTTTAACCTGCCTCGTCCACCATGGAAGAAACAGTCAAATTTTGGTTCCTCTGTTGTTTTTCCACTTTTTGGGAATGTGTATCCAAAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTATCAGGTGACACTCAATGTAGGCCAACCCCCCAAACCTTACTTTCTTGACATTGACACAGGGAGTGATCTCACTTGGCTCCAATGTGACGCACCTTGTGTCAAATGTATTCCA..............................................................................................................................................GCACCTCACAGTCCGTACAAACCGAATAAAAATGTTATCAAGCATAAGGATCCCATTTGTGCATCCCTTCACTCACCTGCAAACCATCCCCGTTACAGTCCTGACGATCAATGTGACTATGAGGTTGAGTATGCGGATCATTGTTCATCCTTGGGAGTGCTGGTCAGAGACGCATTTCCAGTAAAATTCACCAACGGTAGCTCCATTGCTCCTCCTCTGGTGTTCGG.................................................................................................................................................................................................................................................................................................TTGTGGGTATGATCAAGAAGTCCCAGCCTCTGAGCATGCACCTTATACGGATGGAATTCTTGGCCTAGGGAATGGAAAATCAAGCATAGTATCACAGTTGAGTAGCTTGGGTTTTATCCGGAATGTAGTAGGTCACTGTTTAAGCGGGCAAGGTGGAGGTTTTCTTTTCCTTGGAGATGATGTTGTCCCGTCTTCTGGGATTGTTTGGTCACCTATCGTCCGTGAATCTTCAGA.............................................................................................GAAACATTATTCTTTGGGACCGGCAGATCTCCTTTTTGGTGGGCAGGCAACTGGGATGAAGAGTCTACCGATAATTTTAGACAGTGGAAGTACCTTTACCTACTTCAATTCCGAAGCTTACAAAACTCTGTTGTCTTCG............................................................................ATTAAGAAAAACATAGATGCAAAGCAGCTGACTGATGCAGTGAACGACAAAAGTTTGCCCGTCTGCTGGAAAGGCTCCAAACCTTTCAAATCCCTTAAAGATGCTACGAGGTACTTCAAGCCATTGACACTTAGTTTCACAAAAGCTAAGAATATTCAGCTTCAACTGACACCCGAAGCTTATCTTATTCATACT.......................................................................................AATAAGGGCAATGTATGCTTAGGGATACTGAACGGTTCGGAGGTTGGATTAAGAGCTGTTAATATCATCGGAG...........................................................................................................................................................................................ATATTTCTATGTTAGACAAAATGGTGATTTACGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335073" ref_strand="+" ref_description="SGN-U335073        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="159791" stop="160676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="160091" g_stop="160376" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-U335073" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="160091" e_stop="160376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGAAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGACTATAAGACTTTAGGAAAATTCCATTCTTTCTTTCTTTCTTTCGTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACTGCACCAACACCAACACCGGCAAGACAAGGAGCGTCTGAGCCAGCCACTGGGGCTGTAG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335931" ref_strand="+" ref_description="SGN-U335931        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 1e-33, score=146)">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="160150" stop="161303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="160450" g_stop="161003" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-U335931" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="160450" e_stop="161003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATCTGATACTAGGGCGGTGACTCCTCCACCGACAGAGGAAGTAGTAAGAGAAGGGGAGGATGGGGAAAACGAACAAGTACAGAATGAGGAATTACCACCCCAACCTACCCCAGAGATGATAAATCAGGTGCTTGCTTATCTTAGTGGGTTATCTGATCAAGGTCAAACACCTTCAGTGTTTTCTGCACTAGCACCTCAGGGTCTGGAAGTACAACAGGCAACTGCTGCGGCTCCCCGCATGGATATTCCATTAGAAATAGGCACGTTTCCTCGCCTGACTACAGGGCCTATAATGACAAATGATCAACATGAACTTTTCAGTAAGTTCTTGAAATTAAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAATGGCTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335938" ref_strand="-" ref_description="SGN-U335938        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 4e-59, score=231)">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="160798" stop="162821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="161077" g_stop="161263" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.888"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="161264" i_stop="162043" i_length="780">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="162044" g_stop="162507" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="651" r_length="464" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-U335938" ref_strand="-">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335938" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="161077" e_stop="161263"/>
          <exon e_start="162044" e_stop="162507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGCAGGATGTCGGTTTCTGCCTATGAGGCTAAGTTTCGTGCACTCTCCAGGTATGCCACCCAACTGTGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGGTCAGAATTGCAGATTTCAGCCTTACAGATAGCGGCTACGGCAAAATTCTTTCAAGAAGTGGTAGACTTCGTGATAGAGGTGGAAGGAGTGAAGCCAGATGACTTCACCATGGCATCGAAATCAAAAAGGTTTCGAAATGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCAGGAGGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCGCAGACTGGTCTACACTTCTTTGAGTTTGGAGGTTATCCCCAGACTTCGTCATTTTCACAGAGATCTATGCTTGAATCCAGAGAGTGTTATGGATGTGGGGAGACTGGACACATTAAGAGGTATTGTCCAAAACAGAGTTACAGACCTCAAATAGTCAGAGGTAGAGGTGGTCATGGAAGAGGCCGTCATTCTGGAGGGCGTGGTGGCCGAGGTAATGGTGGTCACCAAAACGGTCGGGGTGACGGACAAATGGGAACTACTGCAGCGCAGCCTGGTAGAGGCAACGTGCAGACAGGTGATATGGCCCATTGTTACGCTTTCCCTGGGCGGTCAGAAGCGGAGACATCAGATGTTGTCATCACAGGTAATCTTTTGGTTTGTGATTGCATGGATTTTGTATTATTTGACGCTGGATCCACATTTTCATATATATCTTCCTCATTTGCTACTGGTCTTAAATTAAATTGTGAATTGCTTGACATGCCTATTCATGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAGAAGGTGTATAGGTCTTGTCCTGTGACTTTTATGGAGAGCAATACTTATGTAGACTTGTTTATCTTAGAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGAATTTTGCGATATTGGATTGTAATGCTAAAATTGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTTCGTATCATCTCCTTTCTTCGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGACACTACCCAAGTACCTTCAATTGAGTCGGTTTCGGTAGTCCGTGAGTTTTTAGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGAGATATTGACTTCTGCATCGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAGGCCCAACTTCAAGAGTTGTTAAGTAAAGGTTTCATTAGACCAAGTGCATCCCCTTGGGGTGCTCCAGT</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAGAAATGGTTGACTTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317065" ref_strand="+" ref_description="SGN-U317065        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 3e-84, score=314)">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="162837" stop="161483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="162540" g_stop="161783" g_length="758"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="757" r_length="757" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-U317065" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="162540" e_stop="161783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAACTCCCATCCTTCTTCTTCACAAATAACACTGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAACCTTTACTTAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCGATGCAGAAGTCAATATCTCTATCCGGTGGCATACCAGGAAGGTCTGCAGGAAACACATCTAAAAACTCACGGACTACCGAAACCGACTCAATTGAAGGTACTTGGGTAGTGTCATCCCTGAGGTGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTCTCTTAGCACGAAGAAAGGAGATGATACGAACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACAATTTTAGCATTACAATCCAATATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAAACAAGTCTACATAAGTATTGCTCTCCATAAAAGTCACAGGACAAGACCTATACACCTTCTCAACTATCACAGACTCACCCACCGGAGTAGAAACATGAATAGGCATGTCAAGCAATTCACAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATATATATGAAAATGTGGATCCAGCGTCAAATAATACAAAATCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATC</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATCAACAATACAGAAGCCATGCAATCAC-AATCGAAAGATTACCTGTGATGACAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335937" ref_strand="+" ref_description="SGN-U335937        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="162437" stop="161507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="162137" g_stop="161807" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-U335937" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="162137" e_stop="161807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAATTTTAGCATTACAATCCAATATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAAACAAGTCTACATAAGTATTGCTCTCCATAAAAGTCACAGGACAAGACCTATACACCTTCTCAACTATCACAGACTCACCCACCGGAGTAGAAACATGAATAGGCATGTCAAGCAATTCACAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATATATATGAAAATGTGGATCCAGCGTCAAATAATACAAAATCCATGCAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335936" ref_strand="+" ref_description="SGN-U335936        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 2e-62, score=215)">
      <seq>tttgatcctgcctccacattttcatatgtatcttcctcatttgctactgttcttaatttacatagtgaatcgcttgacatacctattcgtgttctactccggtgggtgagtctgtgattgttgaaaaggtgtataggtcttgtcttgtgacatttgtgggagcaatactcatgtagacttggttatcctataaatggttgacttcgatgtaattctgggtatgacttggctgtctccaaattttgcaatcttggattgtaatgctaaaactgtaacgttggccaagcctgagatagatgcgttagtgtgggagggtgactacacttccactccagttcgtatcatctcctttctttgtgctaagagaatggttagtaaagggtgtttagctttcttggcacacctcagggatgatactacccaagtaccttcaattgagtcagtttcgatagtccgtgagtttctggatgtgtttcctgcagaccttcctggtatgccaccggatagggatattgacttttgcattgatctggagccgggtgatcaccccatttccatacccccttatagaatggctcccgctgagttgggggagttaaaggcccaacttcaagagttgttangtaagggcttcattangccaagtgcatccccttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="+" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="161537" stop="162797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="161837" g_stop="162497" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="+" ref_id="SGN-U335936" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="161837" e_stop="162497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGACGCTGGATCCACATTTTCATATATATCTTCCTCATTTGCTACTGGTCTTAAATTAAATTGTGAATTGCTTGACATGCCTATTCATGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAGAAGGTGTATAGGTCTTGTCCTGTGACTTTTATGGAGAGCAATACTTATGTAGACTTGTTTATCTTAGAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGAATTTTGCGATATTGGATTGTAATGCTAAAATTGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTTCGTATCATCTCCTTTCTTCGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGACACTACCCAAGTACCTTCAATTGAGTCGGTTTCGGTAGTCCGTGAGTTTTTAGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGAGATATTGACTTCTGCATCGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAGGCCCAACTTCAAGAGTTGTTAAGTAAAGGTTTCATTAGACCAAGTGCATCCCCTTGGG</genome_strand>
        <mrna_strand>TTTGATCCTGCCTCCACATTTTCATATGTATCTTCCTCATTTGCTACTGTTCTTAATTTACATAGTGAATCGCTTGACATACCTATTCGTGTT-CTACTCCGGTGGGTGAGTCTGTGATTGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACATTTGTGG-GAGCAATACTCATGTAGACTTGGTTATCCTATAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTGTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGAGATAGATGCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTTGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCAGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTGATCACCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTGGGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTANGTAAGGGCTTCATTANGCCAAGTGCATCCCCTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335935" ref_strand="+" ref_description="SGN-U335935        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 2e-78, score=295)">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0115P13-A6Oco/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0115P13.1" temp_strand="-" temp_description="C06SLm0115P13.1  AC226731.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0115P13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="162909" stop="161651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="162609" g_stop="161951" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0115P13.1" gen_strand="-" ref_id="SGN-U335935" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0115P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="162609" e_stop="161951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGAGGAAGAGGATACTTATTCTTAACCGTTACCTTATTTAGTTGTCTGTAATCTATGCACATCCTAAAACTCCCATCCTTCTTCTTCACAAATAACACTGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAACCTTTACTTAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCGATGCAGAAGTCAATATCTCTATCCGGTGGCATACCAGGAAGGTCTGCAGGAAACACATCTAAAAACTCACGGACTACCGAAACCGACTCAATTGAAGGTACTTGGGTAGTGTCATCCCTGAGGTGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTCTCTTAGCACGAAGAAAGGAGATGATACGAACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACAATTTTAGCATTACAATCCAATATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAAACAAGTCTACATAAGTATTGCTCTCCATAAAAGTC-ACAGGACAAGACCTATACACCTTCTCAACTATCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAAC-AGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>20</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="9712" PGL_stop="6725"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9712" e_stop="9592"/>
            <exon e_start="8656" e_stop="8493"/>
            <exon e_start="8417" e_stop="8163"/>
            <exon e_start="7788" e_stop="7667"/>
            <exon e_start="7577" e_stop="7456"/>
            <exon e_start="6766" e_stop="6725"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.951" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.955" e_score="0.994"/>
          <exon-intron don_prob="0.776" acc_prob="0.961" e_score="0.992"/>
          <exon-intron don_prob="0.765" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.964" e_score="0.984"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9712" e_stop="9592" e_length="121"/>
          </exon>
          <intron i_serial="1" don_prob="0.951" acc_prob="0.989">
            <gDNA_intron_boundary i_start="9591" i_stop="8657" i_length="935"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="8656" e_stop="8493" e_length="164"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.955">
            <gDNA_intron_boundary i_start="8492" i_stop="8418" i_length="75"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="8417" e_stop="8163" e_length="255"/>
          </exon>
          <intron i_serial="3" don_prob="0.776" acc_prob="0.961">
            <gDNA_intron_boundary i_start="8162" i_stop="7789" i_length="374"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7788" e_stop="7667" e_length="122"/>
          </exon>
          <intron i_serial="4" don_prob="0.765" acc_prob="0.971">
            <gDNA_intron_boundary i_start="7666" i_stop="7578" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="0.984">
            <gDNA_exon_boundary e_start="7577" e_stop="7456" e_length="122"/>
          </exon>
          <intron i_serial="5" don_prob="0.960" acc_prob="0.964">
            <gDNA_intron_boundary i_start="7455" i_stop="6767" i_length="689"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="6766" e_stop="6725" e_length="42"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9712" stop="9592"/>
              <exon start="8656" stop="8493"/>
              <exon start="8417" stop="8163"/>
              <exon start="7788" stop="7667"/>
              <exon start="7577" stop="7456"/>
              <exon start="6766" stop="6725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331496" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAATTTGGAAGGACGTGTTAAGGAAGGAAGAATGACTCAAGAGCATTATAAAAAAGCGTGCACGCTTTTAAAGGGTGTTTTGAGCTATGATAACTTCAAAGATGTGGATCTAGTCATAGAG : GACATGCCTGACATTGTGTCCTTGAAGCAGCAATTTTTTGCTGATCTTGATGAATGTTGCCCTCATCACTGCATTTTTGCTTCAACTACTTGTATAGTCAACTTAGATTTGATTGGAGAAAGGATGAAACCATGTAGGGAGATTGTTGGGATCCACTTTTTTAG : CTCACCCTCTGTCACTGATCTCCTGGAAATTGTCCGAACAAAGAGGACATCCCCTCAAACGCTTGTTGATCTGTTAAACTTTGGAAGGAGGATTCAAAAGACTCCTATTGTAGTTCAGAATTGTACAGGTTTTGCAGTCAGACATATGTGCTTCCCCTACTTGCAGGCAGCGATGCTTCTTGTTGAACATGGTGCTGATGTGTATCAGATTGATAAGGCGCTTACCAGCTTTGGGTTGAAACTGGGTCCATTTAG : AATGCTTGATCAAGATGGATTCCTGTCTGCAGCTGTGCATGATGTGAAATTCCTTGAGACTTTTCCAGATAGATCTTACAAATCGAATTTGATTCCAATCATGAGGAAAAATAACGGTGAAG : GTAAATACTCTTGCCAGGGCTTCTACACATACAATGACAAGGAAGAGGCAAGCCCAGATCCCGAAATATCAAAATATATAGAAATGGCGAGAAGTATGTCTGGTATCACCATTAGATCAAAG : TTGGCAACGTTGTCCGATGGAGAAATTGTTGAGATGATTCTT</gDNA_template>
            <first_frame> Q  F  G  R  T  C  *  G  R  K  N  D  S  R  A  L  *  K  S  V  H  A  F  K  G  C  F  E  L  *  *  L  Q  R  C  G  S  S  H  R   : G  H  A  *  H  C  V  L  E  A  A  I  F  C  *  S  *  *  M  L  P  S  S  L  H  F  C  F  N  Y  L  Y  S  Q  L  R  F  D  W  R  K  D  E  T  M  *  G  D  C  W  D  P  L  F  *  :  L  T  L  C  H  *  S  P  G  N  C  P  N  K  E  D  I  P  S  N  A  C  *  S  V  K  L  W  K  E  D  S  K  D  S  Y  C  S  S  E  L  Y  R  F  C  S  Q  T  Y  V  L  P  L  L  A  G  S  D  A  S  C  *  T  W  C  *  C  V  S  D  *  *  G  A  Y  Q  L  W  V  E  T  G  S  I  *  :  N  A  *  S  R  W  I  P  V  C  S  C  A  *  C  E  I  P  *  D  F  S  R  *  I  L  Q  I  E  F  D  S  N  H  E  E  K  *  R  *  R :   *  I  L  L  P  G  L  L  H  I  Q  *  Q  G  R  G  K  P  R  S  R  N  I  K  I  Y  R  N  G  E  K  Y  V  W  Y  H  H  *  I  K   : V  G  N  V  V  R  W  R  N  C  *  D  D  S  </first_frame>
            <second_frame>  N  L  E  G  R  V  K  E  G  R  M  T  Q  E  H  Y  K  K  A  C  T  L  L  K  G  V  L  S  Y  D  N  F  K  D  V  D  L  V  I  E  :  D  M  P  D  I  V  S  L  K  Q  Q  F  F  A  D  L  D  E  C  C  P  H  H  C  I  F  A  S  T  T  C  I  V  N  L  D  L  I  G  E  R  M  K  P  C  R  E  I  V  G  I  H  F  F  S :   S  P  S  V  T  D  L  L  E  I  V  R  T  K  R  T  S  P  Q  T  L  V  D  L  L  N  F  G  R  R  I  Q  K  T  P  I  V  V  Q  N  C  T  G  F  A  V  R  H  M  C  F  P  Y  L  Q  A  A  M  L  L  V  E  H  G  A  D  V  Y  Q  I  D  K  A  L  T  S  F  G  L  K  L  G  P  F  R :   M  L  D  Q  D  G  F  L  S  A  A  V  H  D  V  K  F  L  E  T  F  P  D  R  S  Y  K  S  N  L  I  P  I  M  R  K  N  N  G  E   : G  K  Y  S  C  Q  G  F  Y  T  Y  N  D  K  E  E  A  S  P  D  P  E  I  S  K  Y  I  E  M  A  R  S  M  S  G  I  T  I  R  S  K  :  L  A  T  L  S  D  G  E  I  V  E  M  I  L </second_frame>
            <third_frame>   I  W  K  D  V  L  R  K  E  E  *  L  K  S  I  I  K  K  R  A  R  F  *  R  V  F  *  A  M  I  T  S  K  M  W  I  *  S  *  R :   T  C  L  T  L  C  P  *  S  S  N  F  L  L  I  L  M  N  V  A  L  I  T  A  F  L  L  Q  L  L  V  *  S  T  *  I  *  L  E  K  G  *  N  H  V  G  R  L  L  G  S  T  F  L   : A  H  P  L  S  L  I  S  W  K  L  S  E  Q  R  G  H  P  L  K  R  L  L  I  C  *  T  L  E  G  G  F  K  R  L  L  L  *  F  R  I  V  Q  V  L  Q  S  D  I  C  A  S  P  T  C  R  Q  R  C  F  L  L  N  M  V  L  M  C  I  R  L  I  R  R  L  P  A  L  G  *  N  W  V  H  L   : E  C  L  I  K  M  D  S  C  L  Q  L  C  M  M  *  N  S  L  R  L  F  Q  I  D  L  T  N  R  I  *  F  Q  S  *  G  K  I  T  V  K  :  V  N  T  L  A  R  A  S  T  H  T  M  T  R  K  R  Q  A  Q  I  P  K  Y  Q  N  I  *  K  W  R  E  V  C  L  V  S  P  L  D  Q  S :   W  Q  R  C  P  M  E  K  L  L  R  *  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0115P13.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9711" stop="9592"/>
                    <exon start="8656" stop="8493"/>
                    <exon start="8417" stop="8163"/>
                    <exon start="7788" stop="7667"/>
                    <exon start="7577" stop="7456"/>
                    <exon start="6766" stop="6725"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>825</number_coding_nucleotides>
                  <number_encoded_amino_acids>275</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLEGRVKEGRMTQEHYKKACTLLKGVLSYDNFKDVDLVIEDMPDIVSLKQQFFADLDECCPHHCIFASTTCIVNLDLIGERMKPCREIVGIHFFSSPSVTDLLEIVRTKRTSPQTLVDLLNFGRRIQKTPIVVQNCTGFAVRHMCFPYLQAAMLLVEHGADVYQIDKALTSFGLKLGPFRMLDQDGFLSAAVHDVKFLETFPDRSYKSNLIPIMRKNNGEGKYSCQGFYTYNDKEEASPDPEISKYIEMARSMSGITIRSKLATLSDGEIVEMIL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="25656" PGL_stop="30344"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25656" e_stop="25922"/>
            <exon e_start="27187" e_stop="27369"/>
            <exon e_start="28934" e_stop="29175"/>
            <exon e_start="29807" e_stop="30344"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.940" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25656" e_stop="25922" e_length="267"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.940">
            <gDNA_intron_boundary i_start="25923" i_stop="27186" i_length="1264"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27187" e_stop="27369" e_length="183"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="27370" i_stop="28933" i_length="1564"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28934" e_stop="29175" e_length="242"/>
          </exon>
          <intron i_serial="3" don_prob="0.924" acc_prob="1.000">
            <gDNA_intron_boundary i_start="29176" i_stop="29806" i_length="631"/>
          </intron>
          <exon e_serial="4" e_score="0.983">
            <gDNA_exon_boundary e_start="29807" e_stop="30344" e_length="538"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25656" stop="25922"/>
              <exon start="27187" stop="27369"/>
              <exon start="28934" stop="29175"/>
              <exon start="29807" stop="30344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323937" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAATCTCACTGTAAACGGCATAAATATGCACATAGCTGAAATTGGTGAAGGCCCATCAACAATACTATTCCTTCATGGTTTCCCTGAACTCTGGTATTCATGGCGTCACCAACTGATTTCACTTTCATCCAAAGGTTACCGCGCAATAGCACCAGATCTACGTGGTTATGGCGATACAGATTCTCCCCCTTCTCCTTCTAGCTATACCGTTTTTCATATTGTTGGTGACCTTATTGCCCTTCTAGATGCTCTGGGTCTCGATCAG : GTGTTCCTTGTTGGACATGATTGGGGTGCTGTTATAGCTTGGCATGTATGCCTTTTGCGACCTGATAGGATCAAAGCACTGGTTAATATGAGCGTTGTCTTCCACCCCAGGAACCCCAAGAGAAAGCCTATTGAATCTATGCGTGCTGTCCTCGGGGATGATTACTATATTTGCAGATTTCAG : GAATATGGAGAGGCAGAAGAGGAGTTTGCTCGTGTTGATACCGCTAGACTAATCGCGAAATTTTTAACATCACGCAATCCAGCTCCTCTTCGTGTGCCTAAAGAGAAAGGATTTGGGGGTTCACCACATACTCCCATTACATTGCCATCTTGGTTGTCAGAAGAGGATGTCAACTACTATGCCAACAAGTTCAGACAGTCAGGTTTTACTGGTGGATTAAACTACTATCGAGCTATGGACCT : AAACTGGGAGCTGACCGCGCCATGGACCGGTGTACAAATTAAGGTCCCTGTTAAGTTCATCGTAGGGGATGTGGACCTAACTTACAATACACCTGGTGTTAAGGAATATATCCACAAAGGTGGTTTCCAAAAAGTGGTGCCATTCTTGCAAGAAGTAGTTATCATGGAAGGAGTTGCACACTTCATCAACCAAGAAAGACCAGAAGAAATTAATGACCACATATATGACTTTTTTCAAAAGTTCTAAGGTGTCTGTAATTTTAACTTTTTATCATGGATTGCTTTGTTGCTTTGAATCTTTTTTCAAGTCTTTTTATGTGTGTGGGATAAAGGGCACATGGTCTATCGGAAATAGCCTCTCTATCCCAAAAGGTAGAGATAGGTTTGCATTACCATCCTCATACCCCACTTGTGAATTACACTAGATATGTTGTTATTAGAATATAAGACCAGTTTATGTATCTTAAAACTTCAAAGCTTTTACTAAAGAATTCAGCTTTTCTGGACTATTTTTAATTTGGTAACTATGGACAGAATC</gDNA_template>
            <first_frame> K  N  L  T  V  N  G  I  N  M  H  I  A  E  I  G  E  G  P  S  T  I  L  F  L  H  G  F  P  E  L  W  Y  S  W  R  H  Q  L  I  S  L  S  S  K  G  Y  R  A  I  A  P  D  L  R  G  Y  G  D  T  D  S  P  P  S  P  S  S  Y  T  V  F  H  I  V  G  D  L  I  A  L  L  D  A  L  G  L  D  Q  :  V  F  L  V  G  H  D  W  G  A  V  I  A  W  H  V  C  L  L  R  P  D  R  I  K  A  L  V  N  M  S  V  V  F  H  P  R  N  P  K  R  K  P  I  E  S  M  R  A  V  L  G  D  D  Y  Y  I  C  R  F  Q  :  E  Y  G  E  A  E  E  E  F  A  R  V  D  T  A  R  L  I  A  K  F  L  T  S  R  N  P  A  P  L  R  V  P  K  E  K  G  F  G  G  S  P  H  T  P  I  T  L  P  S  W  L  S  E  E  D  V  N  Y  Y  A  N  K  F  R  Q  S  G  F  T  G  G  L  N  Y  Y  R  A  M  D  L :   N  W  E  L  T  A  P  W  T  G  V  Q  I  K  V  P  V  K  F  I  V  G  D  V  D  L  T  Y  N  T  P  G  V  K  E  Y  I  H  K  G  G  F  Q  K  V  V  P  F  L  Q  E  V  V  I  M  E  G  V  A  H  F  I  N  Q  E  R  P  E  E  I  N  D  H  I  Y  D  F  F  Q  K  F  *  G  V  C  N  F  N  F  L  S  W  I  A  L  L  L  *  I  F  F  Q  V  F  L  C  V  W  D  K  G  H  M  V  Y  R  K  *  P  L  Y  P  K  R  *  R  *  V  C  I  T  I  L  I  P  H  L  *  I  T  L  D  M  L  L  L  E  Y  K  T  S  L  C  I  L  K  L  Q  S  F  Y  *  R  I  Q  L  F  W  T  I  F  N  L  V  T  M  D  R  I </first_frame>
            <second_frame>  K  I  S  L  *  T  A  *  I  C  T  *  L  K  L  V  K  A  H  Q  Q  Y  Y  S  F  M  V  S  L  N  S  G  I  H  G  V  T  N  *  F  H  F  H  P  K  V  T  A  Q  *  H  Q  I  Y  V  V  M  A  I  Q  I  L  P  L  L  L  L  A  I  P  F  F  I  L  L  V  T  L  L  P  F  *  M  L  W  V  S  I  R :   C  S  L  L  D  M  I  G  V  L  L  *  L  G  M  Y  A  F  C  D  L  I  G  S  K  H  W  L  I  *  A  L  S  S  T  P  G  T  P  R  E  S  L  L  N  L  C  V  L  S  S  G  M  I  T  I  F  A  D  F  R :   N  M  E  R  Q  K  R  S  L  L  V  L  I  P  L  D  *  S  R  N  F  *  H  H  A  I  Q  L  L  F  V  C  L  K  R  K  D  L  G  V  H  H  I  L  P  L  H  C  H  L  G  C  Q  K  R  M  S  T  T  M  P  T  S  S  D  S  Q  V  L  L  V  D  *  T  T  I  E  L  W  T   : *  T  G  S  *  P  R  H  G  P  V  Y  K  L  R  S  L  L  S  S  S  *  G  M  W  T  *  L  T  I  H  L  V  L  R  N  I  S  T  K  V  V  S  K  K  W  C  H  S  C  K  K  *  L  S  W  K  E  L  H  T  S  S  T  K  K  D  Q  K  K  L  M  T  T  Y  M  T  F  F  K  S  S  K  V  S  V  I  L  T  F  Y  H  G  L  L  C  C  F  E  S  F  F  K  S  F  Y  V  C  G  I  K  G  T  W  S  I  G  N  S  L  S  I  P  K  G  R  D  R  F  A  L  P  S  S  Y  P  T  C  E  L  H  *  I  C  C  Y  *  N  I  R  P  V  Y  V  S  *  N  F  K  A  F  T  K  E  F  S  F  S  G  L  F  L  I  W  *  L  W  T  E   </second_frame>
            <third_frame>   K  S  H  C  K  R  H  K  Y  A  H  S  *  N  W  *  R  P  I  N  N  T  I  P  S  W  F  P  *  T  L  V  F  M  A  S  P  T  D  F  T  F  I  Q  R  L  P  R  N  S  T  R  S  T  W  L  W  R  Y  R  F  S  P  F  S  F  *  L  Y  R  F  S  Y  C  W  *  P  Y  C  P  S  R  C  S  G  S  R  S   : G  V  P  C  W  T  *  L  G  C  C  Y  S  L  A  C  M  P  F  A  T  *  *  D  Q  S  T  G  *  Y  E  R  C  L  P  P  Q  E  P  Q  E  K  A  Y  *  I  Y  A  C  C  P  R  G  *  L  L  Y  L  Q  I  S   : G  I  W  R  G  R  R  G  V  C  S  C  *  Y  R  *  T  N  R  E  I  F  N  I  T  Q  S  S  S  S  S  C  A  *  R  E  R  I  W  G  F  T  T  Y  S  H  Y  I  A  I  L  V  V  R  R  G  C  Q  L  L  C  Q  Q  V  Q  T  V  R  F  Y  W  W  I  K  L  L  S  S  Y  G  P  :  K  L  G  A  D  R  A  M  D  R  C  T  N  *  G  P  C  *  V  H  R  R  G  C  G  P  N  L  Q  Y  T  W  C  *  G  I  Y  P  Q  R  W  F  P  K  S  G  A  I  L  A  R  S  S  Y  H  G  R  S  C  T  L  H  Q  P  R  K  T  R  R  N  *  *  P  H  I  *  L  F  S  K  V  L  R  C  L  *  F  *  L  F  I  M  D  C  F  V  A  L  N  L  F  S  S  L  F  M  C  V  G  *  R  A  H  G  L  S  E  I  A  S  L  S  Q  K  V  E  I  G  L  H  Y  H  P  H  T  P  L  V  N  Y  T  R  Y  V  V  I  R  I  *  D  Q  F  M  Y  L  K  T  S  K  L  L  L  K  N  S  A  F  L  D  Y  F  *  F  G  N  Y  G  Q  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0115P13.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25656" stop="25922"/>
                    <exon start="27187" stop="27369"/>
                    <exon start="28934" stop="29175"/>
                    <exon start="29807" stop="30053"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>936</number_coding_nucleotides>
                  <number_encoded_amino_acids>312</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNLTVNGINMHIAEIGEGPSTILFLHGFPELWYSWRHQLISLSSKGYRAIAPDLRGYGDTDSPPSPSSYTVFHIVGDLIALLDALGLDQVFLVGHDWGAVIAWHVCLLRPDRIKALVNMSVVFHPRNPKRKPIESMRAVLGDDYYICRFQEYGEAEEEFARVDTARLIAKFLTSRNPAPLRVPKEKGFGGSPHTPITLPSWLSEEDVNYYANKFRQSGFTGGLNYYRAMDLNWELTAPWTGVQIKVPVKFIVGDVDLTYNTPGVKEYIHKGGFQKVVPFLQEVVIMEGVAHFINQERPEEINDHIYDFFQKF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="34431" PGL_stop="33434"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34431" e_stop="34405"/>
            <exon e_start="34292" e_stop="34236"/>
            <exon e_start="34121" e_stop="34015"/>
            <exon e_start="33926" e_stop="33434"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.870" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.429" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34431" e_stop="34405" e_length="27"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.959">
            <gDNA_intron_boundary i_start="34404" i_stop="34293" i_length="112"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34292" e_stop="34236" e_length="57"/>
          </exon>
          <intron i_serial="2" don_prob="0.870" acc_prob="0.999">
            <gDNA_intron_boundary i_start="34235" i_stop="34122" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34121" e_stop="34015" e_length="107"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.429">
            <gDNA_intron_boundary i_start="34014" i_stop="33927" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="33926" e_stop="33434" e_length="493"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34431" stop="34405"/>
              <exon start="34292" stop="34236"/>
              <exon start="34121" stop="34015"/>
              <exon start="33926" stop="33434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34430" stop="34405"/>
              <exon start="34292" stop="34236"/>
              <exon start="34121" stop="34015"/>
              <exon start="33926" stop="33534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334576" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCAACTATGACGACATGAAATATGCT : ATAAAAAAACTTGATGAATCTGAGTTTCGGAATGCTTTTTCTCGTTCAACAATTCGG : GTGAAGGAACATGATTCTAGAAGCCGCAGCCGCAGCCGTTCTTACTCGAGAGGAAAGAGTGGTAGCCGTAGCCGCAGTCGAAGTTACAGTCGCAGCCGGAGCAGAAG : CAAATCTCCTAAAGCTAAGTCGTCAAAGCGTACAAGATCTCGTTCTAGATCTGTCTCTTCTCAGCCCCGTTCTGGGTTAAAAGGACGCTCTTTGTCAAGGTAATCTTTCTTACTGGTCATATCTACCCATTTTGTTGTTGGGGCAGGTTATGTAAAAGTAGCATATAGTACAAGGTTAATGTATATTTTTATGCAAGTCCTTGTACTGGTCTTTTTTTGAGTCAAAAGTCCTTGTGTCTATCAGTTTATCTTAATCATTTTAATCTTTTCTTTGTGAAAGCCACCTGGGAATTAACTGTTGCATCTTGCACCTCATTTATTTAGTGGGAAATCAGCTGAGCACTTTGTTTCCAACCCTTAATCTTGACTAGACTTTGTATAGTTGTGGACATGAGATGGCTTTGAAGCAAAAAGTTGTTTTGCAGTGTGACCAATTTAACATTTTCACACAAGTTGGTTGTAAATTTCACAAATTCAAATTGCAAATTGCATC</gDNA_template>
            <first_frame> T  N  Y  D  D  M  K  Y  A  :  I  K  K  L  D  E  S  E  F  R  N  A  F  S  R  S  T  I  R  :  V  K  E  H  D  S  R  S  R  S  R  S  R  S  Y  S  R  G  K  S  G  S  R  S  R  S  R  S  Y  S  R  S  R  S  R  S :   K  S  P  K  A  K  S  S  K  R  T  R  S  R  S  R  S  V  S  S  Q  P  R  S  G  L  K  G  R  S  L  S  R  *  S  F  L  L  V  I  S  T  H  F  V  V  G  A  G  Y  V  K  V  A  Y  S  T  R  L  M  Y  I  F  M  Q  V  L  V  L  V  F  F  *  V  K  S  P  C  V  Y  Q  F  I  L  I  I  L  I  F  S  L  *  K  P  P  G  N  *  L  L  H  L  A  P  H  L  F  S  G  K  S  A  E  H  F  V  S  N  P  *  S  *  L  D  F  V  *  L  W  T  *  D  G  F  E  A  K  S  C  F  A  V  *  P  I  *  H  F  H  T  S  W  L  *  I  S  Q  I  Q  I  A  N  C  I </first_frame>
            <second_frame>  P  T  M  T  T  *  N  M  L :   *  K  N  L  M  N  L  S  F  G  M  L  F  L  V  Q  Q  F  G :   *  R  N  M  I  L  E  A  A  A  A  A  V  L  T  R  E  E  R  V  V  A  V  A  A  V  E  V  T  V  A  A  G  A  E   : A  N  L  L  K  L  S  R  Q  S  V  Q  D  L  V  L  D  L  S  L  L  S  P  V  L  G  *  K  D  A  L  C  Q  G  N  L  S  Y  W  S  Y  L  P  I  L  L  L  G  Q  V  M  *  K  *  H  I  V  Q  G  *  C  I  F  L  C  K  S  L  Y  W  S  F  F  E  S  K  V  L  V  S  I  S  L  S  *  S  F  *  S  F  L  C  E  S  H  L  G  I  N  C  C  I  L  H  L  I  Y  L  V  G  N  Q  L  S  T  L  F  P  T  L  N  L  D  *  T  L  Y  S  C  G  H  E  M  A  L  K  Q  K  V  V  L  Q  C  D  Q  F  N  I  F  T  Q  V  G  C  K  F  H  K  F  K  L  Q  I  A   </second_frame>
            <third_frame>   Q  L  *  R  H  E  I  C   : Y  K  K  T  *  *  I  *  V  S  E  C  F  F  S  F  N  N  S   : G  E  G  T  *  F  *  K  P  Q  P  Q  P  F  L  L  E  R  K  E  W  *  P  *  P  Q  S  K  L  Q  S  Q  P  E  Q  K  :  Q  I  S  *  S  *  V  V  K  A  Y  K  I  S  F  *  I  C  L  F  S  A  P  F  W  V  K  R  T  L  F  V  K  V  I  F  L  T  G  H  I  Y  P  F  C  C  W  G  R  L  C  K  S  S  I  *  Y  K  V  N  V  Y  F  Y  A  S  P  C  T  G  L  F  L  S  Q  K  S  L  C  L  S  V  Y  L  N  H  F  N  L  F  F  V  K  A  T  W  E  L  T  V  A  S  C  T  S  F  I  *  W  E  I  S  *  A  L  C  F  Q  P  L  I  L  T  R  L  C  I  V  V  D  M  R  W  L  *  S  K  K  L  F  C  S  V  T  N  L  T  F  S  H  K  L  V  V  N  F  T  N  S  N  C  K  L  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0115P13.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34431" stop="34405"/>
                    <exon start="34292" stop="34236"/>
                    <exon start="34121" stop="34015"/>
                    <exon start="33926" stop="33824"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TNYDDMKYAIKKLDESEFRNAFSRSTIRVKEHDSRSRSRSRSYSRGKSGSRSRSRSYSRSRSRSKSPKAKSSKRTRSRSRSVSSQPRSGLKGRSLSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="49876" PGL_stop="55728"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49876" e_stop="50532"/>
            <exon e_start="51412" e_stop="51779"/>
            <exon e_start="54161" e_stop="54373"/>
            <exon e_start="54859" e_stop="55728"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.972" acc_prob="0.990" e_score="0.997"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.886" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="49876" e_stop="50532" e_length="657"/>
          </exon>
          <intron i_serial="1" don_prob="0.972" acc_prob="0.990">
            <gDNA_intron_boundary i_start="50533" i_stop="51411" i_length="879"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51412" e_stop="51779" e_length="368"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="51780" i_stop="54160" i_length="2381"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54161" e_stop="54373" e_length="213"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="0.886">
            <gDNA_intron_boundary i_start="54374" i_stop="54858" i_length="485"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="54859" e_stop="55728" e_length="870"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49876" stop="50532"/>
              <exon start="51412" stop="51779"/>
              <exon start="54161" stop="54373"/>
              <exon start="54859" stop="55728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318232" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTACTCATTTCCACCACAAAGTTCCCAAAATGTATATCCAAAAAGAGAAACCTTCACTTTCTCTTGCTCTTTCATTCATTTTCTTGCTCACATTCTTCTTTCCCCCAAAATCATTATTAGTATCAAGTACTCAACAAATTCATGTTCACAAAAACATCCAAATTGCAAATTCACATTGCCAAGACACACTTTACCCTAAGCTTTGCATTTCCACTCTTTCATTAATCCCAAATCTTCATAAAAAATCAATTCCAGAAATCATATCTTCCAATGTCAATGTCACAATGAATGAAGTCAAATCCTCTGCTGAAAATTGCTCTAACATACTTCACCATATGTCCAAATTGGACCCTATTGAGAAAAGGGCATTAGATGATTGTATTGAACTTTTAGGTGATACAACTATTGATGAGTTACAAACAACTCTTAATGATCTTTCTACTAAAAATAGTAGTAATTCACCTTTAAAGCACTATAATGATCTACAAACACTTCTTAGTGGTGCAATGACAAATCAAGATACTTGTCTTGAAGGAATTCACAAAAGTAAACACAAATTGAGTCAATACATTGAGAAGAACTTGCATACAATATCTCATCATGTGAGCAACTCTCTTGCCATGCTTAAGAAGTTAAAGACAGGGTCGTCTCAAGG : GTCGTCATCAAACTCTAATGAAGTCTTCCCCGAGTACGGCACCATGAAGAATGGGTACCCAAAATGGTTGCAAAAAAAGGACCGGACCCTTTTACAAGCTCCGTTGAACCAAATTAAGTTCAATTTGGTTGTGGCTAAAGATGGTAGTGGTAATTTTACTACTATTAATGCAGCGTTAAGTGCTGCACCAAATTCTTCTAGTACAAGATTTGTGATTTACATCAAGGCGGGAACGTATTTCGAATATATTGACGTAGAAAGAAAGAAAAGTATGATAATGTTCATCGGAGATGGGATCGGAAAAACAGTAATAAAGGGTAATCGGAACGTCGTAGATGGATGGACTACTTTCCGATCAGCTACCGTTG : CTGTGGTGGGAAATGGATTCTTAGCTAGAGGCATTACGTTTGAGAACTATGCCGGACCAAGCAAGCACCAAGCGGTGGCGCTGCGGAGCGGCTCCGACCTATCGGCGTTCTACCAATGTAGCTTTATTGCCTATCAAGACACCCTCTACGTCCACTCACTTCGACAATTCTATCGCGATTGCGATGTCTATGGGACGGTTGACTTCATTTTTG : GTAATGCAGCTGTTGTTCTCCAGAATTGTAACTTGTATGCTCGTAAACCTAACCCGAATCAGAAGAACATGTTCACGGCACAAGGAAGAGAAGATCCAAATCAAAACACTGGAATTTCAATCTTGAATTGTAAAGTGGAAGCTGCATCGGATTTAGTTCCTGTTGTATCGTCATTCAAAAATTACTTAGGACGACCATGGAAACAATATTCAAGAACTGTAATTCTCATATCCAATATTGGAAGCTTAATTGATCCTGCTGGTTGGTTAGAATGGAGTGGTGATTTTGCATTGAACACACTTTATTATGGAGAGTATTTGAACCGGGGACCCGGTTCAAATACTAGTGCTAGAGTAAAATGGCCCGGTTATCGGGTCATTAATAGCTCTAGTGAGGCCAGTCAATTCACTGTTGGAAATTTTATTCAAGGGAGTGAGTGGATACCTGCTACCGGGGTGCCATTTTATTCTGGTTTGACTTCCTCTTGAATACATTATTTTAAATCAGCGACCGCTGAGGGTTTATCTTATAGGGTATTTATTAATATAATTTTTATCAAAAATATCAACAACTTATGGGGTATTTATTAATATATATACCTTGGAGATAACAACCACAATAGTTACTAGTCTGGTTCATTGCTTGCATATGTTCATGTGTTAAGATTTTTCTTAGCATATGTTGTTTTAGCTTGTTTTCCTATTGAGAATATATATATATATATATATATATATATTATAATATTTCTTTTTGTGAGAAATTTGATGTCAGAGCTTCATTTCTTGAGGAATTGTTAATGTCAATGAATGTAGTGCCAATATAAGTTTGATCTTTATCATGAATAAATTTTGAATGTATTTATTTATATAA</gDNA_template>
            <first_frame> Y  Y  S  F  P  P  Q  S  S  Q  N  V  Y  P  K  R  E  T  F  T  F  S  C  S  F  I  H  F  L  A  H  I  L  L  S  P  K  I  I  I  S  I  K  Y  S  T  N  S  C  S  Q  K  H  P  N  C  K  F  T  L  P  R  H  T  L  P  *  A  L  H  F  H  S  F  I  N  P  K  S  S  *  K  I  N  S  R  N  H  I  F  Q  C  Q  C  H  N  E  *  S  Q  I  L  C  *  K  L  L  *  H  T  S  P  Y  V  Q  I  G  P  Y  *  E  K  G  I  R  *  L  Y  *  T  F  R  *  Y  N  Y  *  *  V  T  N  N  S  *  *  S  F  Y  *  K  *  *  *  F  T  F  K  A  L  *  *  S  T  N  T  S  *  W  C  N  D  K  S  R  Y  L  S  *  R  N  S  Q  K  *  T  Q  I  E  S  I  H  *  E  E  L  A  Y  N  I  S  S  C  E  Q  L  S  C  H  A  *  E  V  K  D  R  V  V  S  R  :  V  V  I  K  L  *  *  S  L  P  R  V  R  H  H  E  E  W  V  P  K  M  V  A  K  K  G  P  D  P  F  T  S  S  V  E  P  N  *  V  Q  F  G  C  G  *  R  W  *  W  *  F  Y  Y  Y  *  C  S  V  K  C  C  T  K  F  F  *  Y  K  I  C  D  L  H  Q  G  G  N  V  F  R  I  Y  *  R  R  K  K  E  K  Y  D  N  V  H  R  R  W  D  R  K  N  S  N  K  G  *  S  E  R  R  R  W  M  D  Y  F  P  I  S  Y  R  C :   C  G  G  K  W  I  L  S  *  R  H  Y  V  *  E  L  C  R  T  K  Q  A  P  S  G  G  A  A  E  R  L  R  P  I  G  V  L  P  M  *  L  Y  C  L  S  R  H  P  L  R  P  L  T  S  T  I  L  S  R  L  R  C  L  W  D  G  *  L  H  F  W :   *  C  S  C  C  S  P  E  L  *  L  V  C  S  *  T  *  P  E  S  E  E  H  V  H  G  T  R  K  R  R  S  K  S  K  H  W  N  F  N  L  E  L  *  S  G  S  C  I  G  F  S  S  C  C  I  V  I  Q  K  L  L  R  T  T  M  E  T  I  F  K  N  C  N  S  H  I  Q  Y  W  K  L  N  *  S  C  W  L  V  R  M  E  W  *  F  C  I  E  H  T  L  L  W  R  V  F  E  P  G  T  R  F  K  Y  *  C  *  S  K  M  A  R  L  S  G  H  *  *  L  *  *  G  Q  S  I  H  C  W  K  F  Y  S  R  E  *  V  D  T  C  Y  R  G  A  I  L  F  W  F  D  F  L  L  N  T  L  F  *  I  S  D  R  *  G  F  I  L  *  G  I  Y  *  Y  N  F  Y  Q  K  Y  Q  Q  L  M  G  Y  L  L  I  Y  I  P  W  R  *  Q  P  Q  *  L  L  V  W  F  I  A  C  I  C  S  C  V  K  I  F  L  S  I  C  C  F  S  L  F  S  Y  *  E  Y  I  Y  I  Y  I  Y  I  Y  Y  N  I  S  F  C  E  K  F  D  V  R  A  S  F  L  E  E  L  L  M  S  M  N  V  V  P  I  *  V  *  S  L  S  *  I  N  F  E  C  I  Y  L  Y   </first_frame>
            <second_frame>  I  T  H  F  H  H  K  V  P  K  M  Y  I  Q  K  E  K  P  S  L  S  L  A  L  S  F  I  F  L  L  T  F  F  F  P  P  K  S  L  L  V  S  S  T  Q  Q  I  H  V  H  K  N  I  Q  I  A  N  S  H  C  Q  D  T  L  Y  P  K  L  C  I  S  T  L  S  L  I  P  N  L  H  K  K  S  I  P  E  I  I  S  S  N  V  N  V  T  M  N  E  V  K  S  S  A  E  N  C  S  N  I  L  H  H  M  S  K  L  D  P  I  E  K  R  A  L  D  D  C  I  E  L  L  G  D  T  T  I  D  E  L  Q  T  T  L  N  D  L  S  T  K  N  S  S  N  S  P  L  K  H  Y  N  D  L  Q  T  L  L  S  G  A  M  T  N  Q  D  T  C  L  E  G  I  H  K  S  K  H  K  L  S  Q  Y  I  E  K  N  L  H  T  I  S  H  H  V  S  N  S  L  A  M  L  K  K  L  K  T  G  S  S  Q  G :   S  S  S  N  S  N  E  V  F  P  E  Y  G  T  M  K  N  G  Y  P  K  W  L  Q  K  K  D  R  T  L  L  Q  A  P  L  N  Q  I  K  F  N  L  V  V  A  K  D  G  S  G  N  F  T  T  I  N  A  A  L  S  A  A  P  N  S  S  S  T  R  F  V  I  Y  I  K  A  G  T  Y  F  E  Y  I  D  V  E  R  K  K  S  M  I  M  F  I  G  D  G  I  G  K  T  V  I  K  G  N  R  N  V  V  D  G  W  T  T  F  R  S  A  T  V   : A  V  V  G  N  G  F  L  A  R  G  I  T  F  E  N  Y  A  G  P  S  K  H  Q  A  V  A  L  R  S  G  S  D  L  S  A  F  Y  Q  C  S  F  I  A  Y  Q  D  T  L  Y  V  H  S  L  R  Q  F  Y  R  D  C  D  V  Y  G  T  V  D  F  I  F   : G  N  A  A  V  V  L  Q  N  C  N  L  Y  A  R  K  P  N  P  N  Q  K  N  M  F  T  A  Q  G  R  E  D  P  N  Q  N  T  G  I  S  I  L  N  C  K  V  E  A  A  S  D  L  V  P  V  V  S  S  F  K  N  Y  L  G  R  P  W  K  Q  Y  S  R  T  V  I  L  I  S  N  I  G  S  L  I  D  P  A  G  W  L  E  W  S  G  D  F  A  L  N  T  L  Y  Y  G  E  Y  L  N  R  G  P  G  S  N  T  S  A  R  V  K  W  P  G  Y  R  V  I  N  S  S  S  E  A  S  Q  F  T  V  G  N  F  I  Q  G  S  E  W  I  P  A  T  G  V  P  F  Y  S  G  L  T  S  S  *  I  H  Y  F  K  S  A  T  A  E  G  L  S  Y  R  V  F  I  N  I  I  F  I  K  N  I  N  N  L  W  G  I  Y  *  Y  I  Y  L  G  D  N  N  H  N  S  Y  *  S  G  S  L  L  A  Y  V  H  V  L  R  F  F  L  A  Y  V  V  L  A  C  F  P  I  E  N  I  Y  I  Y  I  Y  I  Y  I  I  I  F  L  F  V  R  N  L  M  S  E  L  H  F  L  R  N  C  *  C  Q  *  M  *  C  Q  Y  K  F  D  L  Y  H  E  *  I  L  N  V  F  I  Y  I  </second_frame>
            <third_frame>   L  L  I  S  T  T  K  F  P  K  C  I  S  K  K  R  N  L  H  F  L  L  L  F  H  S  F  S  C  S  H  S  S  F  P  Q  N  H  Y  *  Y  Q  V  L  N  K  F  M  F  T  K  T  S  K  L  Q  I  H  I  A  K  T  H  F  T  L  S  F  A  F  P  L  F  H  *  S  Q  I  F  I  K  N  Q  F  Q  K  S  Y  L  P  M  S  M  S  Q  *  M  K  S  N  P  L  L  K  I  A  L  T  Y  F  T  I  C  P  N  W  T  L  L  R  K  G  H  *  M  I  V  L  N  F  *  V  I  Q  L  L  M  S  Y  K  Q  L  L  M  I  F  L  L  K  I  V  V  I  H  L  *  S  T  I  M  I  Y  K  H  F  L  V  V  Q  *  Q  I  K  I  L  V  L  K  E  F  T  K  V  N  T  N  *  V  N  T  L  R  R  T  C  I  Q  Y  L  I  M  *  A  T  L  L  P  C  L  R  S  *  R  Q  G  R  L  K   : G  R  H  Q  T  L  M  K  S  S  P  S  T  A  P  *  R  M  G  T  Q  N  G  C  K  K  R  T  G  P  F  Y  K  L  R  *  T  K  L  S  S  I  W  L  W  L  K  M  V  V  V  I  L  L  L  L  M  Q  R  *  V  L  H  Q  I  L  L  V  Q  D  L  *  F  T  S  R  R  E  R  I  S  N  I  L  T  *  K  E  R  K  V  *  *  C  S  S  E  M  G  S  E  K  Q  *  *  R  V  I  G  T  S  *  M  D  G  L  L  S  D  Q  L  P  L  :  L  W  W  E  M  D  S  *  L  E  A  L  R  L  R  T  M  P  D  Q  A  S  T  K  R  W  R  C  G  A  A  P  T  Y  R  R  S  T  N  V  A  L  L  P  I  K  T  P  S  T  S  T  H  F  D  N  S  I  A  I  A  M  S  M  G  R  L  T  S  F  L  :  V  M  Q  L  L  F  S  R  I  V  T  C  M  L  V  N  L  T  R  I  R  R  T  C  S  R  H  K  E  E  K  I  Q  I  K  T  L  E  F  Q  S  *  I  V  K  W  K  L  H  R  I  *  F  L  L  Y  R  H  S  K  I  T  *  D  D  H  G  N  N  I  Q  E  L  *  F  S  Y  P  I  L  E  A  *  L  I  L  L  V  G  *  N  G  V  V  I  L  H  *  T  H  F  I  M  E  S  I  *  T  G  D  P  V  Q  I  L  V  L  E  *  N  G  P  V  I  G  S  L  I  A  L  V  R  P  V  N  S  L  L  E  I  L  F  K  G  V  S  G  Y  L  L  P  G  C  H  F  I  L  V  *  L  P  L  E  Y  I  I  L  N  Q  R  P  L  R  V  Y  L  I  G  Y  L  L  I  *  F  L  S  K  I  S  T  T  Y  G  V  F  I  N  I  Y  T  L  E  I  T  T  T  I  V  T  S  L  V  H  C  L  H  M  F  M  C  *  D  F  S  *  H  M  L  F  *  L  V  F  L  L  R  I  Y  I  Y  I  Y  I  Y  I  L  *  Y  F  F  L  *  E  I  *  C  Q  S  F  I  S  *  G  I  V  N  V  N  E  C  S  A  N  I  S  L  I  F  I  M  N  K  F  *  M  Y  L  F  I  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0115P13.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49877" stop="50532"/>
                    <exon start="51412" stop="51779"/>
                    <exon start="54161" stop="54373"/>
                    <exon start="54859" stop="55346"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1722</number_coding_nucleotides>
                  <number_encoded_amino_acids>574</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITHFHHKVPKMYIQKEKPSLSLALSFIFLLTFFFPPKSLLVSSTQQIHVHKNIQIANSHCQDTLYPKLCISTLSLIPNLHKKSIPEIISSNVNVTMNEVKSSAENCSNILHHMSKLDPIEKRALDDCIELLGDTTIDELQTTLNDLSTKNSSNSPLKHYNDLQTLLSGAMTNQDTCLEGIHKSKHKLSQYIEKNLHTISHHVSNSLAMLKKLKTGSSQGSSSNSNEVFPEYGTMKNGYPKWLQKKDRTLLQAPLNQIKFNLVVAKDGSGNFTTINAALSAAPNSSSTRFVIYIKAGTYFEYIDVERKKSMIMFIGDGIGKTVIKGNRNVVDGWTTFRSATVAVVGNGFLARGITFENYAGPSKHQAVALRSGSDLSAFYQCSFIAYQDTLYVHSLRQFYRDCDVYGTVDFIFGNAAVVLQNCNLYARKPNPNQKNMFTAQGREDPNQNTGISILNCKVEAASDLVPVVSSFKNYLGRPWKQYSRTVILISNIGSLIDPAGWLEWSGDFALNTLYYGEYLNRGPGSNTSARVKWPGYRVINSSSEASQFTVGNFIQGSEWIPATGVPFYSGLTSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="65174" PGL_stop="71082"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65174" e_stop="65432"/>
            <exon e_start="65540" e_stop="65848"/>
            <exon e_start="65933" e_stop="66222"/>
            <exon e_start="66361" e_stop="66580"/>
            <exon e_start="67636" e_stop="68045"/>
            <exon e_start="68239" e_stop="68261"/>
            <exon e_start="71001" e_stop="71082"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="1.000" e_score="0.988"/>
          <exon-intron don_prob="0.999" acc_prob="0.131" e_score="0.974"/>
          <exon-intron don_prob="0.992" acc_prob="0.998" e_score="0.997"/>
          <exon-intron don_prob="0.991" acc_prob="0.994" e_score="0.991"/>
          <exon-intron don_prob="0.003" acc_prob="0.000" e_score="0.956"/>
          <exon-intron don_prob="0.000" acc_prob="0.758" e_score="0.739"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="65174" e_stop="65432" e_length="259"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="1.000">
            <gDNA_intron_boundary i_start="65433" i_stop="65539" i_length="107"/>
          </intron>
          <exon e_serial="2" e_score="0.974">
            <gDNA_exon_boundary e_start="65540" e_stop="65848" e_length="309"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.131">
            <gDNA_intron_boundary i_start="65849" i_stop="65932" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="65933" e_stop="66222" e_length="290"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.998">
            <gDNA_intron_boundary i_start="66223" i_stop="66360" i_length="138"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="66361" e_stop="66580" e_length="220"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.994">
            <gDNA_intron_boundary i_start="66581" i_stop="67635" i_length="1055"/>
          </intron>
          <exon e_serial="5" e_score="0.956">
            <gDNA_exon_boundary e_start="67636" e_stop="68045" e_length="410"/>
          </exon>
          <intron i_serial="5" don_prob="0.003" acc_prob="0.000">
            <gDNA_intron_boundary i_start="68046" i_stop="68238" i_length="193"/>
          </intron>
          <exon e_serial="6" e_score="0.739">
            <gDNA_exon_boundary e_start="68239" e_stop="68261" e_length="23"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.758">
            <gDNA_intron_boundary i_start="68262" i_stop="71000" i_length="2739"/>
          </intron>
          <exon e_serial="7" e_score="0.667">
            <gDNA_exon_boundary e_start="71001" e_stop="71082" e_length="82"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65174" stop="65432"/>
              <exon start="65540" stop="65848"/>
              <exon start="65933" stop="66222"/>
              <exon start="66361" stop="66580"/>
              <exon start="67636" stop="68045"/>
              <exon start="68239" stop="68261"/>
              <exon start="71001" stop="71082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320559" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTTCTTTAATTTCTCACTTTTTTTCTTCTTTATTTTTATTTTTTTCAATTTCCTATTTAGGCCACAACCACAATGGCTATTCCAAAAGGATTAGAAATCAATAATATTGTAGGATTATTCTTACTTTTGGGTATAGCCATTTTATCATCAAAAGTTGCAGAATGTGCACCTTTTGGTTCGCGTCGTGGCCTTATGGAGACAGTTTTCGATGTTACCAAGCACGGAGCTAGACCAGATCCCACTGCAGATAGCACTCGG : GGATTTATGATGGCATGGAGAGCAGCATGTCAATCAACAGGCCCAGCAAAAGTTGTTATTCCACCAGGAACATTTACTACAGGAGAAACTATTTTTCAAGGCCCATGTACATGTCCAAAGCCCATTATTATTGAAATTCAAGGGACAGTATTGTCAAATACAGACATAAGTTTGTACTCACGTGCCTCATGGATATCCCTCGAACACGTGGACGGTGTCGTTATTACAGGTGGCGGAACTCTAAACGGACAAGGAAATGCCAGCTGGCAGTATGCTGACAAAAGCGGAAACTCTCCTCCTCTCCCTACG : TCTCTTGTATTTCAAACTGTGAAGAGTTCTTCCATCAATGGCATAAATTTTGTGGATTCCAAAGGTGTCCATTTGAAAGTTACTGATAGTAATGACATTACAGTTTCAAAAATCAAGATTACAGCACCAGCAACAAGTCCAAATACTGATGGAATTCATATAAGTGAAACAATTAATATCAATGTTACTGATAGCAACATTGGGACAGGTGATGATTGCATTAGTGTTGGACATGGTACTACCAATATTTTTGTCAATAATATTCATTGTGGCCCTGGACATGGAATAAG : TATTGGAAGCCTTGGAAAGAGACCAGATGAGAAGGATGTTACAAAAGTTTATATAAAAAATTGTACATTCCACAGTACAACAAATGGTGCAAGAATCAAGACTTATATGGATTCATCTCCACTACAAGTTTCTGATGTTGTTTATGAAGATATTGTCTTGGAGGATGTTAAAAATCCAATTCTTATTGATCAACACTATAATTCCAAGAACAAGGTTGAG : CCATCAAAAGTGAAACTAAAAGATATTCACTTCAAGAACATAAGGGGGACAACAAATACAAAAGCTCCAGTATCACTTAATTGCAGTGAAGCAGCTCCATGTGAAGGAGTTGAATTGGCTGATATTGATATAGCTCCATCTGGTACAACTGGACCTCTACAAGGAGCAACATGTCAAAATGCCAAGACAGTATTCAATGGAAAAACTAATGTTCCAGCATGTAAATAATTACATTACATTATTAATCAAATCATGTCCATATGAAAAAATGTGTATAAATTTCAATATAACCATGTAATTTTGTTTATGGTTTATTATAATATTTATTTATATTTTTTTTTTCGATGCCTGGAAATAGAAAAAAAAGAAGAAGATAAAATTTAGCGCTTGACGCATATTAGCTAGTTAGG : TATATAGTAAAGGTTATTTTCTA : ATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> P  S  L  I  S  H  F  F  S  S  L  F  L  F  F  S  I  S  Y  L  G  H  N  H  N  G  Y  S  K  R  I  R  N  Q  *  Y  C  R  I  I  L  T  F  G  Y  S  H  F  I  I  K  S  C  R  M  C  T  F  W  F  A  S  W  P  Y  G  D  S  F  R  C  Y  Q  A  R  S  *  T  R  S  H  C  R  *  H  S   : G  I  Y  D  G  M  E  S  S  M  S  I  N  R  P  S  K  S  C  Y  S  T  R  N  I  Y  Y  R  R  N  Y  F  S  R  P  M  Y  M  S  K  A  H  Y  Y  *  N  S  R  D  S  I  V  K  Y  R  H  K  F  V  L  T  C  L  M  D  I  P  R  T  R  G  R  C  R  Y  Y  R  W  R  N  S  K  R  T  R  K  C  Q  L  A  V  C  *  Q  K  R  K  L  S  S  S  P  Y   : V  S  C  I  S  N  C  E  E  F  F  H  Q  W  H  K  F  C  G  F  Q  R  C  P  F  E  S  Y  *  *  *  *  H  Y  S  F  K  N  Q  D  Y  S  T  S  N  K  S  K  Y  *  W  N  S  Y  K  *  N  N  *  Y  Q  C  Y  *  *  Q  H  W  D  R  *  *  L  H  *  C  W  T  W  Y  Y  Q  Y  F  C  Q  *  Y  S  L  W  P  W  T  W  N  K  :  Y  W  K  P  W  K  E  T  R  *  E  G  C  Y  K  S  L  Y  K  K  L  Y  I  P  Q  Y  N  K  W  C  K  N  Q  D  L  Y  G  F  I  S  T  T  S  F  *  C  C  L  *  R  Y  C  L  G  G  C  *  K  S  N  S  Y  *  S  T  L  *  F  Q  E  Q  G  *   : A  I  K  S  E  T  K  R  Y  S  L  Q  E  H  K  G  D  N  K  Y  K  S  S  S  I  T  *  L  Q  *  S  S  S  M  *  R  S  *  I  G  *  Y  *  Y  S  S  I  W  Y  N  W  T  S  T  R  S  N  M  S  K  C  Q  D  S  I  Q  W  K  N  *  C  S  S  M  *  I  I  T  L  H  Y  *  S  N  H  V  H  M  K  K  C  V  *  I  S  I  *  P  C  N  F  V  Y  G  L  L  *  Y  L  F  I  F  F  F  S  M  P  G  N  R  K  K  R  R  R  *  N  L  A  L  D  A  Y  *  L  V  R  :  Y  I  V  K  V  I  F  * :   S  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </first_frame>
            <second_frame>  L  L  *  F  L  T  F  F  L  L  Y  F  Y  F  F  Q  F  P  I  *  A  T  T  T  M  A  I  P  K  G  L  E  I  N  N  I  V  G  L  F  L  L  L  G  I  A  I  L  S  S  K  V  A  E  C  A  P  F  G  S  R  R  G  L  M  E  T  V  F  D  V  T  K  H  G  A  R  P  D  P  T  A  D  S  T  R  :  G  F  M  M  A  W  R  A  A  C  Q  S  T  G  P  A  K  V  V  I  P  P  G  T  F  T  T  G  E  T  I  F  Q  G  P  C  T  C  P  K  P  I  I  I  E  I  Q  G  T  V  L  S  N  T  D  I  S  L  Y  S  R  A  S  W  I  S  L  E  H  V  D  G  V  V  I  T  G  G  G  T  L  N  G  Q  G  N  A  S  W  Q  Y  A  D  K  S  G  N  S  P  P  L  P  T  :  S  L  V  F  Q  T  V  K  S  S  S  I  N  G  I  N  F  V  D  S  K  G  V  H  L  K  V  T  D  S  N  D  I  T  V  S  K  I  K  I  T  A  P  A  T  S  P  N  T  D  G  I  H  I  S  E  T  I  N  I  N  V  T  D  S  N  I  G  T  G  D  D  C  I  S  V  G  H  G  T  T  N  I  F  V  N  N  I  H  C  G  P  G  H  G  I  S :   I  G  S  L  G  K  R  P  D  E  K  D  V  T  K  V  Y  I  K  N  C  T  F  H  S  T  T  N  G  A  R  I  K  T  Y  M  D  S  S  P  L  Q  V  S  D  V  V  Y  E  D  I  V  L  E  D  V  K  N  P  I  L  I  D  Q  H  Y  N  S  K  N  K  V  E  :  P  S  K  V  K  L  K  D  I  H  F  K  N  I  R  G  T  T  N  T  K  A  P  V  S  L  N  C  S  E  A  A  P  C  E  G  V  E  L  A  D  I  D  I  A  P  S  G  T  T  G  P  L  Q  G  A  T  C  Q  N  A  K  T  V  F  N  G  K  T  N  V  P  A  C  K  *  L  H  Y  I  I  N  Q  I  M  S  I  *  K  N  V  Y  K  F  Q  Y  N  H  V  I  L  F  M  V  Y  Y  N  I  Y  L  Y  F  F  F  R  C  L  E  I  E  K  K  E  E  D  K  I  *  R  L  T  H  I  S  *  L  G :   I  *  *  R  L  F  S   : N  L  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </second_frame>
            <third_frame>   F  F  N  F  S  L  F  F  F  F  I  F  I  F  F  N  F  L  F  R  P  Q  P  Q  W  L  F  Q  K  D  *  K  S  I  I  L  *  D  Y  S  Y  F  W  V  *  P  F  Y  H  Q  K  L  Q  N  V  H  L  L  V  R  V  V  A  L  W  R  Q  F  S  M  L  P  S  T  E  L  D  Q  I  P  L  Q  I  A  L  G :   D  L  *  W  H  G  E  Q  H  V  N  Q  Q  A  Q  Q  K  L  L  F  H  Q  E  H  L  L  Q  E  K  L  F  F  K  A  H  V  H  V  Q  S  P  L  L  L  K  F  K  G  Q  Y  C  Q  I  Q  T  *  V  C  T  H  V  P  H  G  Y  P  S  N  T  W  T  V  S  L  L  Q  V  A  E  L  *  T  D  K  E  M  P  A  G  S  M  L  T  K  A  E  T  L  L  L  S  L  R :   L  L  Y  F  K  L  *  R  V  L  P  S  M  A  *  I  L  W  I  P  K  V  S  I  *  K  L  L  I  V  M  T  L  Q  F  Q  K  S  R  L  Q  H  Q  Q  Q  V  Q  I  L  M  E  F  I  *  V  K  Q  L  I  S  M  L  L  I  A  T  L  G  Q  V  M  I  A  L  V  L  D  M  V  L  P  I  F  L  S  I  I  F  I  V  A  L  D  M  E  *   : V  L  E  A  L  E  R  D  Q  M  R  R  M  L  Q  K  F  I  *  K  I  V  H  S  T  V  Q  Q  M  V  Q  E  S  R  L  I  W  I  H  L  H  Y  K  F  L  M  L  F  M  K  I  L  S  W  R  M  L  K  I  Q  F  L  L  I  N  T  I  I  P  R  T  R  L  S :   H  Q  K  *  N  *  K  I  F  T  S  R  T  *  G  G  Q  Q  I  Q  K  L  Q  Y  H  L  I  A  V  K  Q  L  H  V  K  E  L  N  W  L  I  L  I  *  L  H  L  V  Q  L  D  L  Y  K  E  Q  H  V  K  M  P  R  Q  Y  S  M  E  K  L  M  F  Q  H  V  N  N  Y  I  T  L  L  I  K  S  C  P  Y  E  K  M  C  I  N  F  N  I  T  M  *  F  C  L  W  F  I  I  I  F  I  Y  I  F  F  F  D  A  W  K  *  K  K  K  K  K  I  K  F  S  A  *  R  I  L  A  S  *   : V  Y  S  K  G  Y  F  L  :  I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0115P13.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65235" stop="65432"/>
                    <exon start="65540" stop="65848"/>
                    <exon start="65933" stop="66222"/>
                    <exon start="66361" stop="66580"/>
                    <exon start="67636" stop="67863"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1242</number_coding_nucleotides>
                  <number_encoded_amino_acids>414</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ATTTMAIPKGLEINNIVGLFLLLGIAILSSKVAECAPFGSRRGLMETVFDVTKHGARPDPTADSTRGFMMAWRAACQSTGPAKVVIPPGTFTTGETIFQGPCTCPKPIIIEIQGTVLSNTDISLYSRASWISLEHVDGVVITGGGTLNGQGNASWQYADKSGNSPPLPTSLVFQTVKSSSINGINFVDSKGVHLKVTDSNDITVSKIKITAPATSPNTDGIHISETININVTDSNIGTGDDCISVGHGTTNIFVNNIHCGPGHGISIGSLGKRPDEKDVTKVYIKNCTFHSTTNGARIKTYMDSSPLQVSDVVYEDIVLEDVKNPILIDQHYNSKNKVEPSKVKLKDIHFKNIRGTTNTKAPVSLNCSEAAPCEGVELADIDIAPSGTTGPLQGATCQNAKTVFNGKTNVPACK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="66881" e_stop="67339"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="66881" e_stop="67339" e_length="459"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66881" stop="67339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344226" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATTATAGATGACCAAATTTTTTCTTCGAATACGAAATTAAATTACAATACGCACAAAAAAATAGTTTAAATTTTTTTCCTTTAAACTAAGGAATGAAAGAAAAAAACATAATAAGAATAAGAAACCCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCTCTAAATAATTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTCCGTTAAATGAAGGGTATATGTGAGCCATGTTTGTGACGACAGGGGTATATGTGAGCCGTTTTTATAACGGTAAGGACATATATGAGTCACTTTTATAACGAAGGGTATATCAGCTCCAAATGACAAAATTGAGGGATATATCAGACCCTTTTCCCTTTTTTTAATATTCAGGC</gDNA_template>
            <first_frame> L  L  *  M  T  K  F  F  L  R  I  R  N  *  I  T  I  R  T  K  K  *  F  K  F  F  S  F  K  L  R  N  E  R  K  K  H  N  K  N  K  K  P  K  *  L  *  *  K  K  S  K  N  N  L  C  M  K  K  I  K  I  Y  L  E  L  *  *  K  N  H  I  Y  L  *  I  I  F  K  K  K  L  E  V  T  N  I  N  L  K  L  I  F  *  L  P  L  N  E  G  Y  M  *  A  M  F  V  T  T  G  V  Y  V  S  R  F  Y  N  G  K  D  I  Y  E  S  L  L  *  R  R  V  Y  Q  L  Q  M  T  K  L  R  D  I  S  D  P  F  P  F  F  *  Y  S  G </first_frame>
            <second_frame>  Y  Y  R  *  P  N  F  F  F  E  Y  E  I  K  L  Q  Y  A  Q  K  N  S  L  N  F  F  P  L  N  *  G  M  K  E  K  N  I  I  R  I  R  N  P  N  N  Y  N  K  R  S  Q  K  I  I  Y  V  *  K  K  L  K  Y  T  L  N  F  D  R  R  I  I  Y  I  S  K  *  F  L  K  K  N  *  K  *  Q  I  *  I  *  N  *  F  F  N  F  R  *  M  K  G  I  C  E  P  C  L  *  R  Q  G  Y  M  *  A  V  F  I  T  V  R  T  Y  M  S  H  F  Y  N  E  G  Y  I  S  S  K  *  Q  N  *  G  I  Y  Q  T  L  F  P  F  F  N  I  Q   </second_frame>
            <third_frame>   I  I  D  D  Q  I  F  S  S  N  T  K  L  N  Y  N  T  H  K  K  I  V  *  I  F  F  L  *  T  K  E  *  K  K  K  T  *  *  E  *  E  T  Q  I  I  I  I  K  E  V  K  K  *  F  M  Y  E  K  N  *  N  I  P  *  T  L  I  E  E  S  Y  I  S  L  N  N  F  *  K  K  I  R  S  N  K  Y  K  F  K  T  N  F  L  T  S  V  K  *  R  V  Y  V  S  H  V  C  D  D  R  G  I  C  E  P  F  L  *  R  *  G  H  I  *  V  T  F  I  T  K  G  I  S  A  P  N  D  K  I  E  G  Y  I  R  P  F  S  L  F  L  I  F  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLm0115P13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="73427" PGL_stop="72325"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73427" e_stop="73222"/>
            <exon e_start="72902" e_stop="72325"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73427" e_stop="73222" e_length="206"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="73221" i_stop="72903" i_length="319"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72902" e_stop="72325" e_length="578"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73427" stop="73222"/>
              <exon start="72902" stop="72325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313767" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCCTTCAGATTTTAAAAAAAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAG : GCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGAAAATGTTGAATTCAGTTGAATACGTTGGACATGTATTACATATTAGATTTTCACTTTTTGATTAATTCTAAAAAAAAACAATTAGAAGATCAAGAATTACATTTTGATGAGTAGATGAATTCAGGATTGAAATATTGGAGTTCAATAGTGAAAATATTGTAATTTTTCACATATTATGTTTGTTTTCTGCATAAGAAAAATGTTTGAATTCAACTGAATACGTTGAACATGC</gDNA_template>
            <first_frame> F  P  S  D  F  K  K  N  F  K  F  V  A  A  E  V  I  K  I  S  I  S  S  A  A  T  S  I  Q  F  *  L  I  D  L  L  L  F  S  A  I  S  I  T  M  A  R  Y  L  S  N  C  K  N  I  S  A  F  V  V  D  S  V  S  V  A  I  Q  R :   R  G  Y  A  A  T  A  A  Q  G  G  V  S  G  S  V  R  G  S  G  S  V  R  S  N  V  M  E  S  N  K  T  S  W  V  P  D  P  V  T  G  Y  Y  R  P  E  T  H  A  K  E  I  D  A  A  E  L  R  N  M  L  L  K  Y  K  P  R  Q  N  *  K  K  K  K  N  K  L  E  D  Q  E  S  R  F  D  E  *  R  R  I  R  I  W  I  L  K  F  N  S  R  N  I  V  I  S  H  I  L  C  L  F  F  A  *  G  K  C  *  I  Q  L  N  T  L  D  M  Y  Y  I  L  D  F  H  F  L  I  N  S  K  K  K  Q  L  E  D  Q  E  L  H  F  D  E  *  M  N  S  G  L  K  Y  W  S  S  I  V  K  I  L  *  F  F  T  Y  Y  V  C  F  L  H  K  K  N  V  *  I  Q  L  N  T  L  N  M  </first_frame>
            <second_frame>  F  L  Q  I  L  K  K  I  S  N  L  L  L  R  K  *  L  K  F  R  F  L  P  L  Q  L  Q  F  N  F  D  *  L  I  F  F  Y  S  Q  Q  Y  Q  L  Q  W  L  V  I  Y  P  T  A  K  I  S  L  L  L  L  *  T  L  F  L  *  L  S  R   : G  V  D  T  R  P  R  Q  H  R  V  V  F  L  V  V  *  E  V  V  G  V  L  E  A  M  *  W  N  Q  T  R  L  H  G  Y  Q  I  L  L  L  V  I  T  D  Q  K  L  M  L  R  K  L  M  L  L  N  L  E  T  C  C  *  S  T  N  L  D  K  I  E  K  K  K  R  T  N  *  R  I  K  N  H  V  S  M  S  R  D  E  L  G  F  G  Y  *  S  S  I  V  E  I  L  *  F  L  T  Y  Y  V  C  F  S  H  K  E  N  V  E  F  S  *  I  R  W  T  C  I  T  Y  *  I  F  T  F  *  L  I  L  K  K  N  N  *  K  I  K  N  Y  I  L  M  S  R  *  I  Q  D  *  N  I  G  V  Q  *  *  K  Y  C  N  F  S  H  I  M  F  V  F  C  I  R  K  M  F  E  F  N  *  I  R  *  T  C </second_frame>
            <third_frame>   S  F  R  F  *  K  K  F  Q  I  C  C  C  G  S  N  *  N  F  D  F  F  R  C  N  F  N  S  I  L  I  D  *  S  S  S  I  L  S  N  I  N  Y  N  G  S  L  F  I  Q  L  Q  K  Y  L  C  F  C  C  R  L  C  F  C  S  Y  P  E  :  A  W  I  R  G  H  G  S  T  G  W  C  F  W  *  C  K  R  *  W  E  C  *  K  Q  C  D  G  I  K  Q  D  F  M  G  T  R  S  C  Y  W  L  L  Q  T  R  N  S  C  *  G  N  *  C  C  *  T  *  K  H  V  V  E  V  Q  T  *  T  K  L  K  K  K  K  E  Q  I  R  G  S  R  I  T  F  R  *  V  E  T  N  *  D  L  D  I  E  V  Q  *  *  K  Y  C  N  F  S  H  I  M  F  V  F  R  I  R  K  M  L  N  S  V  E  Y  V  G  H  V  L  H  I  R  F  S  L  F  D  *  F  *  K  K  T  I  R  R  S  R  I  T  F  *  *  V  D  E  F  R  I  E  I  L  E  F  N  S  E  N  I  V  I  F  H  I  L  C  L  F  S  A  *  E  K  C  L  N  S  T  E  Y  V  E  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0115P13.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73334" stop="73222"/>
                    <exon start="72902" stop="72692"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIDLLLFSAISITMARYLSNCKNISAFVVDSVSVAIQRRGYAATAAQGGVSGSVRGSGSVRSNVMESNKTSWVPDPVTGYYRPETHAKEIDAAELRNMLLKYKPRQN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="73420" e_stop="72399"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="73420" e_stop="72399" e_length="1022"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73420" stop="72399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313765" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGATTTTAAAAAAAATTTCAAATTTGTTGCTGCGGAAGTAATTAAAATTTCGATTTCTTCCGCTGCAACTTCAATTCAATTTTGATTGATTGATCTTCTTCTATTCTCAGCAATATCAATTACAATGGCTCGTTATTTATCCAACTGCAAAAATATCTCTGCTTTTGTTGTAGACTCTGTTTCTGTAGCTATCCAGAGGTAAACAAAAATATCATTCTTTTTTTCCCAATTTCCGAGTTTAAAAACGGGTTTATCTGAGTTAAAATAAAATGAACAATAGAAATTTGTGTAGCTGTAAATCTTTTAATTTAAAATAAAATTAATATTTTAAAGTTAAATTGTTAGCGAGTAAAGAAATAAAAAACAGAGTTGTATGATTGTTGGTTCTGTTTTTCCTTTTTCTTTTCAAAATATGTTAATTTTACCTTTTATTATATACTTTTGGGATAATTTATATCATTGTCGTTAGTGTTTACGTTATTTTATTTAAATTTTGAATTTGTCTCTAATAATATAGGCGTGGATACGCGGCCACGGCAGCACAGGGTGGTGTTTCTGGTAGTGTAAGAGGTAGTGGGAGTGTTAGAAGCAATGTGATGGAATCAAACAAGACTTCATGGGTACCAGATCCTGTTACTGGTTATTACAGACCAGAAACTCATGCTAAGGAAATTGATGCTGCTGAACTTAGAAACATGTTGTTGAAGTACAAACCTAGACAAAATTGAAAAAAAAAAAAGAACAAATTAGAGGATCAAGAATCACGTTTCGATGAGTAGAGACGAATTAGGATTTGGATATTGAAGTTCAATAGTAGAAATATTGTAATTTCTCACATATTATGTTTGTTTTTCGCATAAGGAAAATGTTGAATTCAGTTGAATACGTTGGACATGTATTACATATTAGATTTTCACTTTTTGATTAATTCTAAAAAAAAACAATTAGAAGATCAAGAATTACATTTTGATGAGTAGATGAATTCAGGATTGAAATATTGGAGTTCAATAGTGAAAATATT</gDNA_template>
            <first_frame> Q  I  L  K  K  I  S  N  L  L  L  R  K  *  L  K  F  R  F  L  P  L  Q  L  Q  F  N  F  D  *  L  I  F  F  Y  S  Q  Q  Y  Q  L  Q  W  L  V  I  Y  P  T  A  K  I  S  L  L  L  L  *  T  L  F  L  *  L  S  R  G  K  Q  K  Y  H  S  F  F  P  N  F  R  V  *  K  R  V  Y  L  S  *  N  K  M  N  N  R  N  L  C  S  C  K  S  F  N  L  K  *  N  *  Y  F  K  V  K  L  L  A  S  K  E  I  K  N  R  V  V  *  L  L  V  L  F  F  L  F  L  F  K  I  C  *  F  Y  L  L  L  Y  T  F  G  I  I  Y  I  I  V  V  S  V  Y  V  I  L  F  K  F  *  I  C  L  *  *  Y  R  R  G  Y  A  A  T  A  A  Q  G  G  V  S  G  S  V  R  G  S  G  S  V  R  S  N  V  M  E  S  N  K  T  S  W  V  P  D  P  V  T  G  Y  Y  R  P  E  T  H  A  K  E  I  D  A  A  E  L  R  N  M  L  L  K  Y  K  P  R  Q  N  *  K  K  K  K  N  K  L  E  D  Q  E  S  R  F  D  E  *  R  R  I  R  I  W  I  L  K  F  N  S  R  N  I  V  I  S  H  I  L  C  L  F  F  A  *  G  K  C  *  I  Q  L  N  T  L  D  M  Y  Y  I  L  D  F  H  F  L  I  N  S  K  K  K  Q  L  E  D  Q  E  L  H  F  D  E  *  M  N  S  G  L  K  Y  W  S  S  I  V  K  I   </first_frame>
            <second_frame>  R  F  *  K  K  F  Q  I  C  C  C  G  S  N  *  N  F  D  F  F  R  C  N  F  N  S  I  L  I  D  *  S  S  S  I  L  S  N  I  N  Y  N  G  S  L  F  I  Q  L  Q  K  Y  L  C  F  C  C  R  L  C  F  C  S  Y  P  E  V  N  K  N  I  I  L  F  F  P  I  S  E  F  K  N  G  F  I  *  V  K  I  K  *  T  I  E  I  C  V  A  V  N  L  L  I  *  N  K  I  N  I  L  K  L  N  C  *  R  V  K  K  *  K  T  E  L  Y  D  C  W  F  C  F  S  F  F  F  S  K  Y  V  N  F  T  F  Y  Y  I  L  L  G  *  F  I  S  L  S  L  V  F  T  L  F  Y  L  N  F  E  F  V  S  N  N  I  G  V  D  T  R  P  R  Q  H  R  V  V  F  L  V  V  *  E  V  V  G  V  L  E  A  M  *  W  N  Q  T  R  L  H  G  Y  Q  I  L  L  L  V  I  T  D  Q  K  L  M  L  R  K  L  M  L  L  N  L  E  T  C  C  *  S  T  N  L  D  K  I  E  K  K  K  R  T  N  *  R  I  K  N  H  V  S  M  S  R  D  E  L  G  F  G  Y  *  S  S  I  V  E  I  L  *  F  L  T  Y  Y  V  C  F  S  H  K  E  N  V  E  F  S  *  I  R  W  T  C  I  T  Y  *  I  F  T  F  *  L  I  L  K  K  N  N  *  K  I  K  N  Y  I  L  M  S  R  *  I  Q  D  *  N  I  G  V  Q  *  *  K  Y  </second_frame>
            <third_frame>   D  F  K  K  N  F  K  F  V  A  A  E  V  I  K  I  S  I  S  S  A  A  T  S  I  Q  F  *  L  I  D  L  L  L  F  S  A  I  S  I  T  M  A  R  Y  L  S  N  C  K  N  I  S  A  F  V  V  D  S  V  S  V  A  I  Q  R  *  T  K  I  S  F  F  F  S  Q  F  P  S  L  K  T  G  L  S  E  L  K  *  N  E  Q  *  K  F  V  *  L  *  I  F  *  F  K  I  K  L  I  F  *  S  *  I  V  S  E  *  R  N  K  K  Q  S  C  M  I  V  G  S  V  F  P  F  S  F  Q  N  M  L  I  L  P  F  I  I  Y  F  W  D  N  L  Y  H  C  R  *  C  L  R  Y  F  I  *  I  L  N  L  S  L  I  I  *  A  W  I  R  G  H  G  S  T  G  W  C  F  W  *  C  K  R  *  W  E  C  *  K  Q  C  D  G  I  K  Q  D  F  M  G  T  R  S  C  Y  W  L  L  Q  T  R  N  S  C  *  G  N  *  C  C  *  T  *  K  H  V  V  E  V  Q  T  *  T  K  L  K  K  K  K  E  Q  I  R  G  S  R  I  T  F  R  *  V  E  T  N  *  D  L  D  I  E  V  Q  *  *  K  Y  C  N  F  S  H  I  M  F  V  F  R  I  R  K  M  L  N  S  V  E  Y  V  G  H  V  L  H  I  R  F  S  L  F  D  *  F  *  K  K  T  I  R  R  S  R  I  T  F  *  *  V  D  E  F  R  I  E  I  L  E  F  N  S  E  N  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0115P13.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72907" stop="72692"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YRRGYAATAAQGGVSGSVRGSGSVRSNVMESNKTSWVPDPVTGYYRPETHAKEIDAAELRNMLLKYKPRQN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="77541" PGL_stop="76419"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77541" e_stop="77470"/>
            <exon e_start="77088" e_stop="76419"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="0.972"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="77541" e_stop="77470" e_length="72"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="77469" i_stop="77089" i_length="381"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="77088" e_stop="76419" e_length="670"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77541" stop="77470"/>
              <exon start="77088" stop="76419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345634" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTCGTGGCCAGCAAAATTGCTGCAGAACGACAACTTACAGCTGACTCTGCCATTGCTAACATTACCTGCAG : CAATTCGGTGAACATCTATATAGGCATTGGCGTACCATGGCTAATCGATACATTGTACAACTACATTGCATACAACGAGCCATTGCGAATAGAAAATGCAGAAGGACTAAGTTTCTCTCTGCTTGTTTTCTTCTCTACTTCTGTAGCCTGCATCGGTGTTTTGGTGTTTAGACGACTCACTATCGGTGCTGAGCTTGGCGGGCCAAGAGTTTGGGCATGGGTAACTTGCATATTCTTCATGTTGTTATGGCTTATATTTGTTGTGCTATCTTCTCTCAGAGTTTCTGGTATTATATAACAATCTTAGTCCAAATCATTCCTAGAAAGGGGTAATTTTTTTACTCATCGTATCTATCGATGGATATTGGTCTGAGATGGGTTTAAACAACAATCTATGGTCGATTCTGATTTGCTTGGGATTGATAGTAGTTGTTATTGTTGTATTATATTGATTTATGGATATTGGACTGAGATGGGCTTAAATGGAGCGATATCAACATTGAAGATTTATATGGTCGATTTCTATAGTAGTTATTGTTGTATTGTAATGATCGATGTAATGTAGCCTTACACTCTTGCAAGTTGTATGCATGCATGCATGCACTCAATTATGAATTTTGGTAAAGTGTAAATTTTTTAAATTTATTGTATTGATCGACGTATATTGGGT</gDNA_template>
            <first_frame> S  R  G  Q  Q  N  C  C  R  T  T  T  Y  S  *  L  C  H  C  *  H  Y  L  Q  :  Q  F  G  E  H  L  Y  R  H  W  R  T  M  A  N  R  Y  I  V  Q  L  H  C  I  Q  R  A  I  A  N  R  K  C  R  R  T  K  F  L  S  A  C  F  L  L  Y  F  C  S  L  H  R  C  F  G  V  *  T  T  H  Y  R  C  *  A  W  R  A  K  S  L  G  M  G  N  L  H  I  L  H  V  V  M  A  Y  I  C  C  A  I  F  S  Q  S  F  W  Y  Y  I  T  I  L  V  Q  I  I  P  R  K  G  *  F  F  Y  S  S  Y  L  S  M  D  I  G  L  R  W  V  *  T  T  I  Y  G  R  F  *  F  A  W  D  *  *  *  L  L  L  L  Y  Y  I  D  L  W  I  L  D  *  D  G  L  K  W  S  D  I  N  I  E  D  L  Y  G  R  F  L  *  *  L  L  L  Y  C  N  D  R  C  N  V  A  L  H  S  C  K  L  Y  A  C  M  H  A  L  N  Y  E  F  W  *  S  V  N  F  L  N  L  L  Y  *  S  T  Y  I  G  </first_frame>
            <second_frame>  L  V  A  S  K  I  A  A  E  R  Q  L  T  A  D  S  A  I  A  N  I  T  C  S :   N  S  V  N  I  Y  I  G  I  G  V  P  W  L  I  D  T  L  Y  N  Y  I  A  Y  N  E  P  L  R  I  E  N  A  E  G  L  S  F  S  L  L  V  F  F  S  T  S  V  A  C  I  G  V  L  V  F  R  R  L  T  I  G  A  E  L  G  G  P  R  V  W  A  W  V  T  C  I  F  F  M  L  L  W  L  I  F  V  V  L  S  S  L  R  V  S  G  I  I  *  Q  S  *  S  K  S  F  L  E  R  G  N  F  F  T  H  R  I  Y  R  W  I  L  V  *  D  G  F  K  Q  Q  S  M  V  D  S  D  L  L  G  I  D  S  S  C  Y  C  C  I  I  L  I  Y  G  Y  W  T  E  M  G  L  N  G  A  I  S  T  L  K  I  Y  M  V  D  F  Y  S  S  Y  C  C  I  V  M  I  D  V  M  *  P  Y  T  L  A  S  C  M  H  A  C  M  H  S  I  M  N  F  G  K  V  *  I  F  *  I  Y  C  I  D  R  R  I  L  G </second_frame>
            <third_frame>   S  W  P  A  K  L  L  Q  N  D  N  L  Q  L  T  L  P  L  L  T  L  P  A   : A  I  R  *  T  S  I  *  A  L  A  Y  H  G  *  S  I  H  C  T  T  T  L  H  T  T  S  H  C  E  *  K  M  Q  K  D  *  V  S  L  C  L  F  S  S  L  L  L  *  P  A  S  V  F  W  C  L  D  D  S  L  S  V  L  S  L  A  G  Q  E  F  G  H  G  *  L  A  Y  S  S  C  C  Y  G  L  Y  L  L  C  Y  L  L  S  E  F  L  V  L  Y  N  N  L  S  P  N  H  S  *  K  G  V  I  F  L  L  I  V  S  I  D  G  Y  W  S  E  M  G  L  N  N  N  L  W  S  I  L  I  C  L  G  L  I  V  V  V  I  V  V  L  Y  *  F  M  D  I  G  L  R  W  A  *  M  E  R  Y  Q  H  *  R  F  I  W  S  I  S  I  V  V  I  V  V  L  *  *  S  M  *  C  S  L  T  L  L  Q  V  V  C  M  H  A  C  T  Q  L  *  I  L  V  K  C  K  F  F  K  F  I  V  L  I  D  V  Y  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0115P13.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77540" stop="77470"/>
                    <exon start="77088" stop="76791"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVASKIAAERQLTADSAIANITCSNSVNIYIGIGVPWLIDTLYNYIAYNEPLRIENAEGLSFSLLVFFSTSVACIGVLVFRRLTIGAELGGPRVWAWVTCIFFMLLWLIFVVLSSLRVSGII*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="86680" PGL_stop="82022"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86680" e_stop="86476"/>
            <exon e_start="83649" e_stop="83189"/>
            <exon e_start="82091" e_stop="82022"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.296" acc_prob="0.977" e_score="0.985"/>
          <exon-intron don_prob="0.838" acc_prob="0.969" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="86680" e_stop="86476" e_length="205"/>
          </exon>
          <intron i_serial="1" don_prob="0.296" acc_prob="0.977">
            <gDNA_intron_boundary i_start="86475" i_stop="83650" i_length="2826"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="83649" e_stop="83189" e_length="461"/>
          </exon>
          <intron i_serial="2" don_prob="0.838" acc_prob="0.969">
            <gDNA_intron_boundary i_start="83188" i_stop="82092" i_length="1097"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="82091" e_stop="82022" e_length="70"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86680" stop="86476"/>
              <exon start="83649" stop="83189"/>
              <exon start="82091" stop="82022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327953" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAATCCCTATTCGATCTCAATTACAAGCAATAGTCCGGTGGTGCTCACTCCATGCACGTCTTCTTCTTGTATATACTCACCACATTTCTGTAAACTACTATCTCACAAATCAGTTCAAGACCCCATTTTTATCCCCTTTTTTTTCAATCACTAAACGGTACAATATGGAGCAAAATGGATATTGATAGTTGTATATGCCTATATT : GTCCGCATCCGTCCGAAAGAATAATCTTTCTGGGGCTTGAACTGCGAAGAGAAAAATATTTATCAAGATGACCTCGCTTGGAAACTATACCACTCACAGCACCAATGGACATTCAAATATCCTTAGACATGAAAAATGTGATGCTTATTTACTTTTCCATCTAGAAACTGCTCTTGGTGGAGGCTTTCGAACTTTCTTGTATTTTTTGGGTCTTGCCTATTGCTTTATTGGATTGTCAGCTATAACTGCTCGGTTTTTCCGGTCCATGGAGAGTGTTGTCAAGCATAGTCGGACTGTAGAGACGATAGATCCTCTCACAAACACAAAAGCTGTCAAAAATGAAAAGGTGTGGAATTACACAATTGCAGACATCACTCTACTGGCATTTGGGACTAGTTTTCCACAGATCTCGCTAGCTACAATTGATGCAATACGAAATATTGGAAAATTATATGCTGGAG : GTTTAGGTCCGGGAACACTCGTTGGATCTGCTGCTTTCGATCTATTTCCAATACATGCTGTTTGCGTGGT</gDNA_template>
            <first_frame> Q  S  L  F  D  L  N  Y  K  Q  *  S  G  G  A  H  S  M  H  V  F  F  L  Y  I  L  T  T  F  L  *  T  T  I  S  Q  I  S  S  R  P  H  F  Y  P  L  F  F  Q  S  L  N  G  T  I  W  S  K  M  D  I  D  S  C  I  C  L  Y   : C  P  H  P  S  E  R  I  I  F  L  G  L  E  L  R  R  E  K  Y  L  S  R  *  P  R  L  E  T  I  P  L  T  A  P  M  D  I  Q  I  S  L  D  M  K  N  V  M  L  I  Y  F  S  I  *  K  L  L  L  V  E  A  F  E  L  S  C  I  F  W  V  L  P  I  A  L  L  D  C  Q  L  *  L  L  G  F  S  G  P  W  R  V  L  S  S  I  V  G  L  *  R  R  *  I  L  S  Q  T  Q  K  L  S  K  M  K  R  C  G  I  T  Q  L  Q  T  S  L  Y  W  H  L  G  L  V  F  H  R  S  R  *  L  Q  L  M  Q  Y  E  I  L  E  N  Y  M  L  E  :  V  *  V  R  E  H  S  L  D  L  L  L  S  I  Y  F  Q  Y  M  L  F  A  W  </first_frame>
            <second_frame>  N  P  Y  S  I  S  I  T  S  N  S  P  V  V  L  T  P  C  T  S  S  S  C  I  Y  S  P  H  F  C  K  L  L  S  H  K  S  V  Q  D  P  I  F  I  P  F  F  F  N  H  *  T  V  Q  Y  G  A  K  W  I  L  I  V  V  Y  A  Y  I  :  V  R  I  R  P  K  E  *  S  F  W  G  L  N  C  E  E  K  N  I  Y  Q  D  D  L  A  W  K  L  Y  H  S  Q  H  Q  W  T  F  K  Y  P  *  T  *  K  M  *  C  L  F  T  F  P  S  R  N  C  S  W  W  R  L  S  N  F  L  V  F  F  G  S  C  L  L  L  Y  W  I  V  S  Y  N  C  S  V  F  P  V  H  G  E  C  C  Q  A  *  S  D  C  R  D  D  R  S  S  H  K  H  K  S  C  Q  K  *  K  G  V  E  L  H  N  C  R  H  H  S  T  G  I  W  D  *  F  S  T  D  L  A  S  Y  N  *  C  N  T  K  Y  W  K  I  I  C  W  R :   F  R  S  G  N  T  R  W  I  C  C  F  R  S  I  S  N  T  C  C  L  R  G </second_frame>
            <third_frame>   I  P  I  R  S  Q  L  Q  A  I  V  R  W  C  S  L  H  A  R  L  L  L  V  Y  T  H  H  I  S  V  N  Y  Y  L  T  N  Q  F  K  T  P  F  L  S  P  F  F  S  I  T  K  R  Y  N  M  E  Q  N  G  Y  *  *  L  Y  M  P  I  L :   S  A  S  V  R  K  N  N  L  S  G  A  *  T  A  K  R  K  I  F  I  K  M  T  S  L  G  N  Y  T  T  H  S  T  N  G  H  S  N  I  L  R  H  E  K  C  D  A  Y  L  L  F  H  L  E  T  A  L  G  G  G  F  R  T  F  L  Y  F  L  G  L  A  Y  C  F  I  G  L  S  A  I  T  A  R  F  F  R  S  M  E  S  V  V  K  H  S  R  T  V  E  T  I  D  P  L  T  N  T  K  A  V  K  N  E  K  V  W  N  Y  T  I  A  D  I  T  L  L  A  F  G  T  S  F  P  Q  I  S  L  A  T  I  D  A  I  R  N  I  G  K  L  Y  A  G   : G  L  G  P  G  T  L  V  G  S  A  A  F  D  L  F  P  I  H  A  V  C  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0115P13.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83609" stop="83189"/>
                    <exon start="82091" stop="82024"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TAKRKIFIKMTSLGNYTTHSTNGHSNILRHEKCDAYLLFHLETALGGGFRTFLYFLGLAYCFIGLSAITARFFRSMESVVKHSRTVETIDPLTNTKAVKNEKVWNYTIADITLLAFGTSFPQISLATIDAIRNIGKLYAGGLGPGTLVGSAAFDLFPIHAVCV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="91592" PGL_stop="87844"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91592" e_stop="90686"/>
            <exon e_start="88286" e_stop="87844"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.965" acc_prob="0.999" e_score="0.999"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="91592" e_stop="90686" e_length="907"/>
          </exon>
          <intron i_serial="1" don_prob="0.965" acc_prob="0.999">
            <gDNA_intron_boundary i_start="90685" i_stop="88287" i_length="2399"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="88286" e_stop="87844" e_length="443"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91592" stop="90686"/>
              <exon start="88286" stop="87844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331247" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGTGGCGATCTTTTTTGATTTTGAGAATAGTACCCCAAATATCCATAGATACTTGTCGACAATTTTGCTTAATCGCCATTGATTTCAAAGATCCAGATCTTGTTCTTCATTGATAATTTAAGCTGTTTATAGATGAATTGAGGTGAATTTGAGCAGATTTGAACTCCATTGTAGGGTGTTTTCATGAAGTTTCAATGTCGCCTAAGACTCTAGATTCACGTCACGCCATTGAATCGTGTACGTATCATCTCCATTCTTGGAAACCCTTTCAGTTTCCGTCTCCGAATTCTAAAACCCTAGATTTAGATTCGCCAAAAACTTACTCCCCGTCGACCCATGGTGGGCTGCATACGAAGCGTCAATGTAGAGCGGATCGAACAACTTCGATTCCAATTGAAGCTCTTGATATGTCAAAGTTAAGTTTATTTGAGGAGGATAAGCCTTTATCGGTTCATAAACGGGAGAATCTTAGGTTGATAGCTGGTAAGAGGCGGAGACGTGGGTCTCGTTCGGTTTCCGGGAGGAGTAGTGATCGGAGTGGAACTAGAAGACGGTGTTGCTCGGTTGGAGCTTCAGCAGCTTATGGGACTTGTTCGGATTTTCCTGTTGCTGCGGGGACTGATTCAAGTGGGGAATTGTTCGTGAATGGGGATATGCATTGGACTTTGGATGTTAGTGAGGTTACAAAGAGTTTAAGGAAGGAGAAGGAAGGTGGTGGGGTTGGTGAAAGAGAGAATAATTTAAATGGTTTGTCTGTGCAAAGTGGGAATTTTGAGGGGTTGGGTAATGAGTCAGGGTATGGGAGTGAACCGGGGTATCGTGGTGATGCAGAGTTTGGATATGGTGATGAGTTTGATGAAGAAGAAGATGATCAACGGCTTTCCTTCTGGGGCGATGAATTTGGAG : CACTCTCTAGGATGGAGAAAGTTGGAGAGAACTCGTTGCAGAAGGTGCACCATAGATGTCGGCGGAGGAAACAAGATTGTCGAATGGTGATCCCTTGAGGTTTGCTGATGTTGATGAGTGTGATTGATAGCCGGTTCCAAGATTTTGCCAGTGATACAATCGTGTAATTCATGAGCAGAACCTTTTTGGGTTTGAATACAGAATCTGCTGCTGTAAATATGAACAAATGATGTTAATTGTTCATGTCTTATTGTCATGGTACCCCTGATGTTCACCATGGTATGTTTTGGTTGGGGATTAGACAAGTTAGTATATTGTACTATTTAAGGGGTCGTTTGATAGTGTGTAAGAGTAGCGTTGAATATTGTGTATTAGTAATACTGTGATTATCTTTTGTTGTGTTCTATTTCTTTTGGTATATTAAACATAACATGTTTTGCCTA</gDNA_template>
            <first_frame> *  W  R  S  F  L  I  L  R  I  V  P  Q  I  S  I  D  T  C  R  Q  F  C  L  I  A  I  D  F  K  D  P  D  L  V  L  H  *  *  F  K  L  F  I  D  E  L  R  *  I  *  A  D  L  N  S  I  V  G  C  F  H  E  V  S  M  S  P  K  T  L  D  S  R  H  A  I  E  S  C  T  Y  H  L  H  S  W  K  P  F  Q  F  P  S  P  N  S  K  T  L  D  L  D  S  P  K  T  Y  S  P  S  T  H  G  G  L  H  T  K  R  Q  C  R  A  D  R  T  T  S  I  P  I  E  A  L  D  M  S  K  L  S  L  F  E  E  D  K  P  L  S  V  H  K  R  E  N  L  R  L  I  A  G  K  R  R  R  R  G  S  R  S  V  S  G  R  S  S  D  R  S  G  T  R  R  R  C  C  S  V  G  A  S  A  A  Y  G  T  C  S  D  F  P  V  A  A  G  T  D  S  S  G  E  L  F  V  N  G  D  M  H  W  T  L  D  V  S  E  V  T  K  S  L  R  K  E  K  E  G  G  G  V  G  E  R  E  N  N  L  N  G  L  S  V  Q  S  G  N  F  E  G  L  G  N  E  S  G  Y  G  S  E  P  G  Y  R  G  D  A  E  F  G  Y  G  D  E  F  D  E  E  E  D  D  Q  R  L  S  F  W  G  D  E  F  G   : A  L  S  R  M  E  K  V  G  E  N  S  L  Q  K  V  H  H  R  C  R  R  R  K  Q  D  C  R  M  V  I  P  *  G  L  L  M  L  M  S  V  I  D  S  R  F  Q  D  F  A  S  D  T  I  V  *  F  M  S  R  T  F  L  G  L  N  T  E  S  A  A  V  N  M  N  K  *  C  *  L  F  M  S  Y  C  H  G  T  P  D  V  H  H  G  M  F  W  L  G  I  R  Q  V  S  I  L  Y  Y  L  R  G  R  L  I  V  C  K  S  S  V  E  Y  C  V  L  V  I  L  *  L  S  F  V  V  F  Y  F  F  W  Y  I  K  H  N  M  F  C  L </first_frame>
            <second_frame>  S  G  D  L  F  *  F  *  E  *  Y  P  K  Y  P  *  I  L  V  D  N  F  A  *  S  P  L  I  S  K  I  Q  I  L  F  F  I  D  N  L  S  C  L  *  M  N  *  G  E  F  E  Q  I  *  T  P  L  *  G  V  F  M  K  F  Q  C  R  L  R  L  *  I  H  V  T  P  L  N  R  V  R  I  I  S  I  L  G  N  P  F  S  F  R  L  R  I  L  K  P  *  I  *  I  R  Q  K  L  T  P  R  R  P  M  V  G  C  I  R  S  V  N  V  E  R  I  E  Q  L  R  F  Q  L  K  L  L  I  C  Q  S  *  V  Y  L  R  R  I  S  L  Y  R  F  I  N  G  R  I  L  G  *  *  L  V  R  G  G  D  V  G  L  V  R  F  P  G  G  V  V  I  G  V  E  L  E  D  G  V  A  R  L  E  L  Q  Q  L  M  G  L  V  R  I  F  L  L  L  R  G  L  I  Q  V  G  N  C  S  *  M  G  I  C  I  G  L  W  M  L  V  R  L  Q  R  V  *  G  R  R  R  K  V  V  G  L  V  K  E  R  I  I  *  M  V  C  L  C  K  V  G  I  L  R  G  W  V  M  S  Q  G  M  G  V  N  R  G  I  V  V  M  Q  S  L  D  M  V  M  S  L  M  K  K  K  M  I  N  G  F  P  S  G  A  M  N  L  E  :  H  S  L  G  W  R  K  L  E  R  T  R  C  R  R  C  T  I  D  V  G  G  G  N  K  I  V  E  W  *  S  L  E  V  C  *  C  *  *  V  *  L  I  A  G  S  K  I  L  P  V  I  Q  S  C  N  S  *  A  E  P  F  W  V  *  I  Q  N  L  L  L  *  I  *  T  N  D  V  N  C  S  C  L  I  V  M  V  P  L  M  F  T  M  V  C  F  G  W  G  L  D  K  L  V  Y  C  T  I  *  G  V  V  *  *  C  V  R  V  A  L  N  I  V  Y  *  *  Y  C  D  Y  L  L  L  C  S  I  S  F  G  I  L  N  I  T  C  F  A   </second_frame>
            <third_frame>   V  A  I  F  F  D  F  E  N  S  T  P  N  I  H  R  Y  L  S  T  I  L  L  N  R  H  *  F  Q  R  S  R  S  C  S  S  L  I  I  *  A  V  Y  R  *  I  E  V  N  L  S  R  F  E  L  H  C  R  V  F  S  *  S  F  N  V  A  *  D  S  R  F  T  S  R  H  *  I  V  Y  V  S  S  P  F  L  E  T  L  S  V  S  V  S  E  F  *  N  P  R  F  R  F  A  K  N  L  L  P  V  D  P  W  W  A  A  Y  E  A  S  M  *  S  G  S  N  N  F  D  S  N  *  S  S  *  Y  V  K  V  K  F  I  *  G  G  *  A  F  I  G  S  *  T  G  E  S  *  V  D  S  W  *  E  A  E  T  W  V  S  F  G  F  R  E  E  *  *  S  E  W  N  *  K  T  V  L  L  G  W  S  F  S  S  L  W  D  L  F  G  F  S  C  C  C  G  D  *  F  K  W  G  I  V  R  E  W  G  Y  A  L  D  F  G  C  *  *  G  Y  K  E  F  K  E  G  E  G  R  W  W  G  W  *  K  R  E  *  F  K  W  F  V  C  A  K  W  E  F  *  G  V  G  *  *  V  R  V  W  E  *  T  G  V  S  W  *  C  R  V  W  I  W  *  *  V  *  *  R  R  R  *  S  T  A  F  L  L  G  R  *  I  W  S :   T  L  *  D  G  E  S  W  R  E  L  V  A  E  G  A  P  *  M  S  A  E  E  T  R  L  S  N  G  D  P  L  R  F  A  D  V  D  E  C  D  *  *  P  V  P  R  F  C  Q  *  Y  N  R  V  I  H  E  Q  N  L  F  G  F  E  Y  R  I  C  C  C  K  Y  E  Q  M  M  L  I  V  H  V  L  L  S  W  Y  P  *  C  S  P  W  Y  V  L  V  G  D  *  T  S  *  Y  I  V  L  F  K  G  S  F  D  S  V  *  E  *  R  *  I  L  C  I  S  N  T  V  I  I  F  C  C  V  L  F  L  L  V  Y  *  T  *  H  V  L  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0115P13.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91439" stop="90686"/>
                    <exon start="88286" stop="88189"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>849</number_coding_nucleotides>
                  <number_encoded_amino_acids>283</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ADLNSIVGCFHEVSMSPKTLDSRHAIESCTYHLHSWKPFQFPSPNSKTLDLDSPKTYSPSTHGGLHTKRQCRADRTTSIPIEALDMSKLSLFEEDKPLSVHKRENLRLIAGKRRRRGSRSVSGRSSDRSGTRRRCCSVGASAAYGTCSDFPVAAGTDSSGELFVNGDMHWTLDVSEVTKSLRKEKEGGGVGERENNLNGLSVQSGNFEGLGNESGYGSEPGYRGDAEFGYGDEFDEEEDDQRLSFWGDEFGALSRMEKVGENSLQKVHHRCRRRKQDCRMVIP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="104668" PGL_stop="108722"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104668" e_stop="105104"/>
            <exon e_start="106828" e_stop="106945"/>
            <exon e_start="107088" e_stop="107314"/>
            <exon e_start="107604" e_stop="107837"/>
            <exon e_start="107931" e_stop="108069"/>
            <exon e_start="108146" e_stop="108340"/>
            <exon e_start="108428" e_stop="108500"/>
            <exon e_start="108688" e_stop="108722"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.894" e_score="1.000"/>
          <exon-intron don_prob="0.605" acc_prob="0.972" e_score="0.996"/>
          <exon-intron don_prob="0.952" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="0.421" acc_prob="0.996" e_score="0.986"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="104668" e_stop="105104" e_length="437"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.960">
            <gDNA_intron_boundary i_start="105105" i_stop="106827" i_length="1723"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="106828" e_stop="106945" e_length="118"/>
          </exon>
          <intron i_serial="2" don_prob="0.965" acc_prob="0.998">
            <gDNA_intron_boundary i_start="106946" i_stop="107087" i_length="142"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="107088" e_stop="107314" e_length="227"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.894">
            <gDNA_intron_boundary i_start="107315" i_stop="107603" i_length="289"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="107604" e_stop="107837" e_length="234"/>
          </exon>
          <intron i_serial="4" don_prob="0.605" acc_prob="0.972">
            <gDNA_intron_boundary i_start="107838" i_stop="107930" i_length="93"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="107931" e_stop="108069" e_length="139"/>
          </exon>
          <intron i_serial="5" don_prob="0.952" acc_prob="0.999">
            <gDNA_intron_boundary i_start="108070" i_stop="108145" i_length="76"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="108146" e_stop="108340" e_length="195"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.916">
            <gDNA_intron_boundary i_start="108341" i_stop="108427" i_length="87"/>
          </intron>
          <exon e_serial="7" e_score="0.986">
            <gDNA_exon_boundary e_start="108428" e_stop="108500" e_length="73"/>
          </exon>
          <intron i_serial="7" don_prob="0.421" acc_prob="0.996">
            <gDNA_intron_boundary i_start="108501" i_stop="108687" i_length="187"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="108688" e_stop="108722" e_length="35"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104668" stop="105104"/>
              <exon start="106828" stop="106945"/>
              <exon start="107088" stop="107314"/>
              <exon start="107604" stop="107837"/>
              <exon start="107931" stop="108069"/>
              <exon start="108146" stop="108340"/>
              <exon start="108428" stop="108500"/>
              <exon start="108688" stop="108722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323320" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGTCTTCTCTTTCCCCGTGCTTTCTTCCTACACGTGAAATTGACGGAGTCCCCATTTTTCTCATTCGCCATTAACGCTTCAGTCCAAACTTCACCTTCCCCAGCTCCCATTTTTCTACAATCTCTTCATATATAGTTACTTGCTTGACCCATTTATTTTTTTTTTTGGTGATTTTTGAGAAATTTTTTTATAAATCTTTCTGTTCCCAAAATTACCTGTTCAACCTAGAATCAATCTTATTTGTTTGATCGGAAAATCAATTATGAGAGGAAAATGGGAAGTAGTACGAATTTGGGTGTTGTATTTACTGCTTCTATCTGAGTTCTTTCAGGGATGTTTTTCTGCTTTTAACCTGCCTCGTCCACCATGGAAGAAACAGTCAAATTTTGGTTCCTCTGTTGTTTTTCCACTTTTTGGGAATGTGTATCCAAAAGG : GTATTATCAGGTGACACTCAATGTAGGCCAACCCCCCAAACCTTACTTTCTTGACATTGACACAGGGAGTGATCTCACTTGGCTCCAATGTGACGCACCTTGTGTCAAATGTATTCCA : GCACCTCACAGTCCGTACAAACCGAATAAAAATGTTATCAAGCATAAGGATCCCATTTGTGCATCCCTTCACTCACCTGCAAACCATCCCCGTTACAGTCCTGACGATCAATGTGACTATGAGGTTGAGTATGCGGATCATTGTTCATCCTTGGGAGTGCTGGTCAGAGACGCATTTCCAGTAAAATTCACCAACGGTAGCTCCATTGCTCCTCCTCTGGTGTTCGG : TTGTGGGTATGATCAAGAAGTCCCAGCCTCTGAGCATGCACCTTATACGGATGGAATTCTTGGCCTAGGGAATGGAAAATCAAGCATAGTATCACAGTTGAGTAGCTTGGGTTTTATCCGGAATGTAGTAGGTCACTGTTTAAGCGGGCAAGGTGGAGGTTTTCTTTTCCTTGGAGATGATGTTGTCCCGTCTTCTGGGATTGTTTGGTCACCTATCGTCTGTGAATCTTCAGA : GAAACATTATTCTTTGGGACCGGCAGATCTCCTTTTTGGTGGGCAGGCAACTGGGATGAAGAGTCTACCGATAATTTTAGACAGTGGAAGTACCTTTACCTACTTCAATTCCGAAGCTTACAAAACTCTGTTGTCTTCG : ATTAAGAAAAACATAGATGCAAAGCAGCTGACTGATGCAGTGAACGACAAAAGTTTGCCCGTCTGCTGGAAAGGCTCCAAACCTTTCAAATCCCTTAAAGATGCTACGAGGTACTTCAAGCCATTGACACTTAGTTTCACAAAAGCTAAGAATATTCAGCTTCAACTGACACCCGAAGCTTATCTTATTCATACT : AATAAGGGCAATGTATGCTTAGGGATACTGAACGGTTCGGAGGTTGGATTAGGAGCTGTTAATATCATCGGAG : ATATTTCTATGTTAGACAAAATGGTGATTTACGAC</gDNA_template>
            <first_frame> K  V  F  S  F  P  V  L  S  S  Y  T  *  N  *  R  S  P  H  F  S  H  S  P  L  T  L  Q  S  K  L  H  L  P  Q  L  P  F  F  Y  N  L  F  I  Y  S  Y  L  L  D  P  F  I  F  F  F  G  D  F  *  E  I  F  L  *  I  F  L  F  P  K  L  P  V  Q  P  R  I  N  L  I  C  L  I  G  K  S  I  M  R  G  K  W  E  V  V  R  I  W  V  L  Y  L  L  L  L  S  E  F  F  Q  G  C  F  S  A  F  N  L  P  R  P  P  W  K  K  Q  S  N  F  G  S  S  V  V  F  P  L  F  G  N  V  Y  P  K  G :   Y  Y  Q  V  T  L  N  V  G  Q  P  P  K  P  Y  F  L  D  I  D  T  G  S  D  L  T  W  L  Q  C  D  A  P  C  V  K  C  I  P  :  A  P  H  S  P  Y  K  P  N  K  N  V  I  K  H  K  D  P  I  C  A  S  L  H  S  P  A  N  H  P  R  Y  S  P  D  D  Q  C  D  Y  E  V  E  Y  A  D  H  C  S  S  L  G  V  L  V  R  D  A  F  P  V  K  F  T  N  G  S  S  I  A  P  P  L  V  F  G :   C  G  Y  D  Q  E  V  P  A  S  E  H  A  P  Y  T  D  G  I  L  G  L  G  N  G  K  S  S  I  V  S  Q  L  S  S  L  G  F  I  R  N  V  V  G  H  C  L  S  G  Q  G  G  G  F  L  F  L  G  D  D  V  V  P  S  S  G  I  V  W  S  P  I  V  C  E  S  S  E :   K  H  Y  S  L  G  P  A  D  L  L  F  G  G  Q  A  T  G  M  K  S  L  P  I  I  L  D  S  G  S  T  F  T  Y  F  N  S  E  A  Y  K  T  L  L  S  S  :  I  K  K  N  I  D  A  K  Q  L  T  D  A  V  N  D  K  S  L  P  V  C  W  K  G  S  K  P  F  K  S  L  K  D  A  T  R  Y  F  K  P  L  T  L  S  F  T  K  A  K  N  I  Q  L  Q  L  T  P  E  A  Y  L  I  H  T  :  N  K  G  N  V  C  L  G  I  L  N  G  S  E  V  G  L  G  A  V  N  I  I  G   : D  I  S  M  L  D  K  M  V  I  Y  D </first_frame>
            <second_frame>  K  S  S  L  S  P  C  F  L  P  T  R  E  I  D  G  V  P  I  F  L  I  R  H  *  R  F  S  P  N  F  T  F  P  S  S  H  F  S  T  I  S  S  Y  I  V  T  C  L  T  H  L  F  F  F  L  V  I  F  E  K  F  F  Y  K  S  F  C  S  Q  N  Y  L  F  N  L  E  S  I  L  F  V  *  S  E  N  Q  L  *  E  E  N  G  K  *  Y  E  F  G  C  C  I  Y  C  F  Y  L  S  S  F  R  D  V  F  L  L  L  T  C  L  V  H  H  G  R  N  S  Q  I  L  V  P  L  L  F  F  H  F  L  G  M  C  I  Q  K   : G  I  I  R  *  H  S  M  *  A  N  P  P  N  L  T  F  L  T  L  T  Q  G  V  I  S  L  G  S  N  V  T  H  L  V  S  N  V  F  Q :   H  L  T  V  R  T  N  R  I  K  M  L  S  S  I  R  I  P  F  V  H  P  F  T  H  L  Q  T  I  P  V  T  V  L  T  I  N  V  T  M  R  L  S  M  R  I  I  V  H  P  W  E  C  W  S  E  T  H  F  Q  *  N  S  P  T  V  A  P  L  L  L  L  W  C  S   : V  V  G  M  I  K  K  S  Q  P  L  S  M  H  L  I  R  M  E  F  L  A  *  G  M  E  N  Q  A  *  Y  H  S  *  V  A  W  V  L  S  G  M  *  *  V  T  V  *  A  G  K  V  E  V  F  F  S  L  E  M  M  L  S  R  L  L  G  L  F  G  H  L  S  S  V  N  L  Q   : R  N  I  I  L  W  D  R  Q  I  S  F  L  V  G  R  Q  L  G  *  R  V  Y  R  *  F  *  T  V  E  V  P  L  P  T  S  I  P  K  L  T  K  L  C  C  L  R :   L  R  K  T  *  M  Q  S  S  *  L  M  Q  *  T  T  K  V  C  P  S  A  G  K  A  P  N  L  S  N  P  L  K  M  L  R  G  T  S  S  H  *  H  L  V  S  Q  K  L  R  I  F  S  F  N  *  H  P  K  L  I  L  F  I  L :   I  R  A  M  Y  A  *  G  Y  *  T  V  R  R  L  D  *  E  L  L  I  S  S  E  :  I  F  L  C  *  T  K  W  *  F  T   </second_frame>
            <third_frame>   S  L  L  F  P  R  A  F  F  L  H  V  K  L  T  E  S  P  F  F  S  F  A  I  N  A  S  V  Q  T  S  P  S  P  A  P  I  F  L  Q  S  L  H  I  *  L  L  A  *  P  I  Y  F  F  F  W  *  F  L  R  N  F  F  I  N  L  S  V  P  K  I  T  C  S  T  *  N  Q  S  Y  L  F  D  R  K  I  N  Y  E  R  K  M  G  S  S  T  N  L  G  V  V  F  T  A  S  I  *  V  L  S  G  M  F  F  C  F  *  P  A  S  S  T  M  E  E  T  V  K  F  W  F  L  C  C  F  S  T  F  W  E  C  V  S  K  R  :  V  L  S  G  D  T  Q  C  R  P  T  P  Q  T  L  L  S  *  H  *  H  R  E  *  S  H  L  A  P  M  *  R  T  L  C  Q  M  Y  S   : S  T  S  Q  S  V  Q  T  E  *  K  C  Y  Q  A  *  G  S  H  L  C  I  P  S  L  T  C  K  P  S  P  L  Q  S  *  R  S  M  *  L  *  G  *  V  C  G  S  L  F  I  L  G  S  A  G  Q  R  R  I  S  S  K  I  H  Q  R  *  L  H  C  S  S  S  G  V  R  :  L  W  V  *  S  R  S  P  S  L  *  A  C  T  L  Y  G  W  N  S  W  P  R  E  W  K  I  K  H  S  I  T  V  E  *  L  G  F  Y  P  E  C  S  R  S  L  F  K  R  A  R  W  R  F  S  F  P  W  R  *  C  C  P  V  F  W  D  C  L  V  T  Y  R  L  *  I  F  R  :  E  T  L  F  F  G  T  G  R  S  P  F  W  W  A  G  N  W  D  E  E  S  T  D  N  F  R  Q  W  K  Y  L  Y  L  L  Q  F  R  S  L  Q  N  S  V  V  F   : D  *  E  K  H  R  C  K  A  A  D  *  C  S  E  R  Q  K  F  A  R  L  L  E  R  L  Q  T  F  Q  I  P  *  R  C  Y  E  V  L  Q  A  I  D  T  *  F  H  K  S  *  E  Y  S  A  S  T  D  T  R  S  L  S  Y  S  Y   : *  *  G  Q  C  M  L  R  D  T  E  R  F  G  G  W  I  R  S  C  *  Y  H  R  R :   Y  F  Y  V  R  Q  N  G  D  L  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0115P13.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104863" stop="105104"/>
                    <exon start="106828" stop="106945"/>
                    <exon start="107088" stop="107314"/>
                    <exon start="107604" stop="107837"/>
                    <exon start="107931" stop="108069"/>
                    <exon start="108146" stop="108340"/>
                    <exon start="108428" stop="108500"/>
                    <exon start="108688" stop="108722"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1263</number_coding_nucleotides>
                  <number_encoded_amino_acids>421</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFLFPKLPVQPRINLICLIGKSIMRGKWEVVRIWVLYLLLLSEFFQGCFSAFNLPRPPWKKQSNFGSSVVFPLFGNVYPKGYYQVTLNVGQPPKPYFLDIDTGSDLTWLQCDAPCVKCIPAPHSPYKPNKNVIKHKDPICASLHSPANHPRYSPDDQCDYEVEYADHCSSLGVLVRDAFPVKFTNGSSIAPPLVFGCGYDQEVPASEHAPYTDGILGLGNGKSSIVSQLSSLGFIRNVVGHCLSGQGGGFLFLGDDVVPSSGIVWSPIVCESSEKHYSLGPADLLFGGQATGMKSLPIILDSGSTFTYFNSEAYKTLLSSIKKNIDAKQLTDAVNDKSLPVCWKGSKPFKSLKDATRYFKPLTLSFTKAKNIQLQLTPEAYLIHTNKGNVCLGILNGSEVGLGAVNIIGDISMLDKMVIYD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="160091" PGL_stop="160376"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="160091" e_stop="160376"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="160091" e_stop="160376" e_length="286"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="160091" stop="160376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335073" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGAAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGACTATAAGACTTTAGGAAAATTCCATTCTTTCTTTCTTTCTTTCGTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACTGCACCAACACCAACACCGGCAAGACAAGGAGCGTCTGAGCCAGCCACTGGGGCTGTAG</gDNA_template>
            <first_frame> L  G  S  L  V  S  S  H  K  N  E  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  F  E  R  L  *  D  F  R  K  I  P  F  F  L  S  F  F  R  A  I  T  W  V  Q  L  V  S  R  *  Y  K  L  V  S  D  H  L  H  S  I  S  Q  M  V  R  T  R  A  T  T  A  P  T  P  T  P  A  R  Q  G  A  S  E  P  A  T  G  A  V  </first_frame>
            <second_frame>  *  V  R  W  S  H  H  T  R  T  S  L  V  E  S  *  E  T  V  G  G  R  L  Y  F  S  L  R  D  Y  K  T  L  G  K  F  H  S  F  F  L  S  F  V  L  L  L  G  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  R  L  H  Q  H  Q  H  R  Q  D  K  E  R  L  S  Q  P  L  G  L  * </second_frame>
            <third_frame>   R  F  V  G  L  I  T  Q  E  R  V  *  *  S  L  K  K  R  *  G  D  A  F  T  F  L  *  E  T  I  R  L  *  E  N  S  I  L  S  F  F  L  S  C  Y  Y  L  G  P  I  G  I  *  V  I  Q  I  G  I  *  P  S  S  L  Y  F  A  D  G  *  N  *  S  N  D  C  T  N  T  N  T  G  K  T  R  S  V  *  A  S  H  W  G  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0115P13.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="160140" stop="160376"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ETVGGRLYFSLRDYKTLGKFHSFFLSFVLLLGSNWYLGDTNWYLTIFTLFRRWLELEQRLHQHQHRQDKERLSQPLGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="160450" PGL_stop="161003"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="160450" e_stop="161003"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="160450" e_stop="161003" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="160450" stop="161003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335931" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTAGCCCATCTGATACTAGGGCGGTGACTCCTCCACCGACAGAGGAAGTAGTAAGAGAAGGGGAGGATGGGGAAAACGAACAAGTACAGAATGAGGAATTACCACCCCAACCTACCCCAGAGATGATAAATCAGGTGCTTGCTTATCTTAGTGGGTTATCTGATCAAGGTCAAACACCTTCAGTGTTTTCTGCACTAGCACCTCAGGGTCTGGAAGTACAACAGGCAACTGCTGCGGCTCCCCGCATGGATATTCCATTAGAAATAGGCACGTTTCCTCGCCTGACTACAGGGCCTATAATGACAAATGATCAACATGAACTTTTCAGTAAGTTCTTGAAATTAAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAATGGCTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</gDNA_template>
            <first_frame> T  *  P  I  *  Y  *  G  G  D  S  S  T  D  R  G  S  S  K  R  R  G  G  W  G  K  R  T  S  T  E  *  G  I  T  T  P  T  Y  P  R  D  D  K  S  G  A  C  L  S  *  W  V  I  *  S  R  S  N  T  F  S  V  F  C  T  S  T  S  G  S  G  S  T  T  G  N  C  C  G  S  P  H  G  Y  S  I  R  N  R  H  V  S  S  P  D  Y  R  A  Y  N  D  K  *  S  T  *  T  F  Q  *  V  L  E  I  K  T  S  S  L  Q  G  C  *  I  *  G  C  L  *  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  M  A  W  C  *  V  C  D  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  I  I   </first_frame>
            <second_frame>  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  V  R  E  G  E  D  G  E  N  E  Q  V  Q  N  E  E  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  S  V  F  S  A  L  A  P  Q  G  L  E  V  Q  Q  A  T  A  A  A  P  R  M  D  I  P  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  W  L  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  I  L  G  R  *  L  L  H  R  Q  R  K  *  *  E  K  G  R  M  G  K  T  N  K  Y  R  M  R  N  Y  H  P  N  L  P  Q  R  *  *  I  R  C  L  L  I  L  V  G  Y  L  I  K  V  K  H  L  Q  C  F  L  H  *  H  L  R  V  W  K  Y  N  R  Q  L  L  R  L  P  A  W  I  F  H  *  K  *  A  R  F  L  A  *  L  Q  G  L  *  *  Q  M  I  N  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  P  M  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  L  *  L  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  H  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0115P13.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="160451" stop="161002"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSDTRAVTPPPTEEVVREGEDGENEQVQNEELPPQPTPEMINQVLAYLSGLSDQGQTPSVFSALAPQGLEVQQATAAAPRMDIPLEIGTFPRLTTGPIMTNDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVEWLGVEFVTYQFQGNAKMWWRSHVECQPTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="161077" PGL_stop="162507"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="161077" e_stop="161263"/>
            <exon e_start="162044" e_stop="162507"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.888"/>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.888">
            <gDNA_exon_boundary e_start="161077" e_stop="161263" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="161264" i_stop="162043" i_length="780"/>
          </intron>
          <exon e_serial="2" e_score="0.918">
            <gDNA_exon_boundary e_start="162044" e_stop="162507" e_length="464"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="161077" stop="161263"/>
              <exon start="162044" stop="162507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335938" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAGGCAGGATGTCGGTTTCTGCCTATGAGGCTAAGTTTCGTGCACTCTCCAGGTATGCCACCCAACTGTGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGGTCAGAATTGCAGATTTCAGCCTTACAGATAGCGGCTACGGCAAAATTCTTTCAAGAAGTGGTAGACTTC : GATGTAATTCTGGGTATGACTTGGCTTTCTCCGAATTTTGCGATATTGGATTGTAATGCTAAAATTGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTTCGTATCATCTCCTTTCTTCGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGACACTACCCAAGTACCTTCAATTGAGTCGGTTTCGGTAGTCCGTGAGTTTTTAGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGAGATATTGACTTCTGCATCGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAGGCCCAACTTCAAGAGTTGTTAAGTAAAGGTTTCATTAGACCAAGTGCATCCCCTTGGGGTGCTCCAGT</gDNA_template>
            <first_frame> A  R  Q  D  V  G  F  C  L  *  G  *  V  S  C  T  L  Q  V  C  H  P  T  V  F  Q  S  T  R  A  D  S  P  F  C  E  G  V  E  V  R  I  A  D  F  S  L  T  D  S  G  Y  G  K  I  L  S  R  S  G  R  L   : R  C  N  S  G  Y  D  L  A  F  S  E  F  C  D  I  G  L  *  C  *  N  C  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  S  Y  H  L  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  P  Q  G  *  H  Y  P  S  T  F  N  *  V  G  F  G  S  P  *  V  F  R  C  V  S  C  R  P  S  W  Y  A  T  G  *  R  Y  *  L  L  H  R  S  *  T  G  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  V  K  G  P  T  S  R  V  V  K  *  R  F  H  *  T  K  C  I  P  L  G  C  S  S </first_frame>
            <second_frame>  Q  G  R  M  S  V  S  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  Q  I  S  A  L  Q  I  A  A  T  A  K  F  F  Q  E  V  V  D  F  :  D  V  I  L  G  M  T  W  L  S  P  N  F  A  I  L  D  C  N  A  K  I  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  R  A  K  R  M  V  S  K  G  C  L  A  F  L  A  H  L  R  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  P  W  G  A  P   </second_frame>
            <third_frame>   K  A  G  C  R  F  L  P  M  R  L  S  F  V  H  S  P  G  M  P  P  N  C  V  S  V  H  K  S  G  F  A  V  L  *  R  G  *  G  Q  N  C  R  F  Q  P  Y  R  *  R  L  R  Q  N  S  F  K  K  W  *  T  S :   M  *  F  W  V  *  L  G  F  L  R  I  L  R  Y  W  I  V  M  L  K  L  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  F  V  S  S  P  F  F  V  L  R  E  W  L  V  K  G  V  *  L  S  W  H  T  S  G  M  T  L  P  K  Y  L  Q  L  S  R  F  R  *  S  V  S  F  *  M  C  F  L  Q  T  F  L  V  C  H  R  I  E  I  L  T  S  A  S  I  L  N  R  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  S  *  R  P  N  F  K  S  C  *  V  K  V  S  L  D  Q  V  H  P  L  G  V  L  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0115P13.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="161078" stop="161263"/>
                    <exon start="162044" stop="162505"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVSAYEAKFRALSRYATQLCFSPQERIRRFVKGLRSELQISALQIAATAKFFQEVVDFDVILGMTWLSPNFAILDCNAKIVTLAKPGTDPLVWEGDYTSNPVRIISFLRAKRMVSKGCLAFLAHLRDDTTQVPSIESVSVVREFLDVFPADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKAQLQELLSKGFIRPSASPWGAP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="161837" e_stop="162497"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="161837" e_stop="162497" e_length="661"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="161837" stop="162497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335936" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGACGCTGGATCCACATTTTCATATATATCTTCCTCATTTGCTACTGGTCTTAAATTAAATTGTGAATTGCTTGACATGCCTATTCATGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAGAAGGTGTATAGGTCTTGTCCTGTGACTTTTATGGAGAGCAATACTTATGTAGACTTGTTTATCTTAGAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGAATTTTGCGATATTGGATTGTAATGCTAAAATTGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTTCGTATCATCTCCTTTCTTCGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGACACTACCCAAGTACCTTCAATTGAGTCGGTTTCGGTAGTCCGTGAGTTTTTAGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGAGATATTGACTTCTGCATCGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAGGCCCAACTTCAAGAGTTGTTAAGTAAAGGTTTCATTAGACCAAGTGCATCCCCTTGGG</gDNA_template>
            <first_frame> F  D  A  G  S  T  F  S  Y  I  S  S  S  F  A  T  G  L  K  L  N  C  E  L  L  D  M  P  I  H  V  S  T  P  V  G  E  S  V  I  V  E  K  V  Y  R  S  C  P  V  T  F  M  E  S  N  T  Y  V  D  L  F  I  L  E  M  V  D  F  D  V  I  L  G  M  T  W  L  S  P  N  F  A  I  L  D  C  N  A  K  I  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  R  A  K  R  M  V  S  K  G  C  L  A  F  L  A  H  L  R  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  P  W  </first_frame>
            <second_frame>  L  T  L  D  P  H  F  H  I  Y  L  P  H  L  L  L  V  L  N  *  I  V  N  C  L  T  C  L  F  M  F  L  L  R  W  V  S  L  *  *  L  R  R  C  I  G  L  V  L  *  L  L  W  R  A  I  L  M  *  T  C  L  S  *  K  W  L  I  L  M  *  F  W  V  *  L  G  F  L  R  I  L  R  Y  W  I  V  M  L  K  L  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  F  V  S  S  P  F  F  V  L  R  E  W  L  V  K  G  V  *  L  S  W  H  T  S  G  M  T  L  P  K  Y  L  Q  L  S  R  F  R  *  S  V  S  F  *  M  C  F  L  Q  T  F  L  V  C  H  R  I  E  I  L  T  S  A  S  I  L  N  R  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  S  *  R  P  N  F  K  S  C  *  V  K  V  S  L  D  Q  V  H  P  L  G </second_frame>
            <third_frame>   *  R  W  I  H  I  F  I  Y  I  F  L  I  C  Y  W  S  *  I  K  L  *  I  A  *  H  A  Y  S  C  F  Y  S  G  G  *  V  C  D  S  *  E  G  V  *  V  L  S  C  D  F  Y  G  E  Q  Y  L  C  R  L  V  Y  L  R  N  G  *  F  *  C  N  S  G  Y  D  L  A  F  S  E  F  C  D  I  G  L  *  C  *  N  C  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  S  Y  H  L  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  P  Q  G  *  H  Y  P  S  T  F  N  *  V  G  F  G  S  P  *  V  F  R  C  V  S  C  R  P  S  W  Y  A  T  G  *  R  Y  *  L  L  H  R  S  *  T  G  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  V  K  G  P  T  S  R  V  V  K  *  R  F  H  *  T  K  C  I  P  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0115P13.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="161837" stop="162496"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDAGSTFSYISSSFATGLKLNCELLDMPIHVSTPVGESVIVEKVYRSCPVTFMESNTYVDLFILEMVDFDVILGMTWLSPNFAILDCNAKIVTLAKPGTDPLVWEGDYTSNPVRIISFLRAKRMVSKGCLAFLAHLRDDTTQVPSIESVSVVREFLDVFPADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKAQLQELLSKGFIRPSASPW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="162609" PGL_stop="161783"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="162609" e_stop="161783"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="162609" e_stop="161783" e_length="827"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="162609" stop="161951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="162540" stop="161783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="162137" stop="161807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335937" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAATGCGAGGAAGAGGATACTTATTCTTAACCGTTACCTTATTTAGTTGTCTGTAATCTATGCACATCCTAAAACTCCCATCCTTCTTCTTCACAAATAACACTGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAACCTTTACTTAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCGATGCAGAAGTCAATATCTCTATCCGGTGGCATACCAGGAAGGTCTGCAGGAAACACATCTAAAAACTCACGGACTACCGAAACCGACTCAATTGAAGGTACTTGGGTAGTGTCATCCCTGAGGTGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTCTCTTAGCACGAAGAAAGGAGATGATACGAACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACAATTTTAGCATTACAATCCAATATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAAACAAGTCTACATAAGTATTGCTCTCCATAAAAGTCACAGGACAAGACCTATACACCTTCTCAACTATCACAGACTCACCCACCGGAGTAGAAACATGAATAGGCATGTCAAGCAATTCACAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATATATATGAAAATGTGGATCCAGCGTCAAATAATACAAAATCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATC</gDNA_template>
            <first_frame> S  M  R  G  R  G  Y  L  F  L  T  V  T  L  F  S  C  L  *  S  M  H  I  L  K  L  P  S  F  F  F  T  N  N  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  L  N  N  S  *  S  W  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  M  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  K  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  L  L  A  R  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  I  L  A  L  Q  S  N  I  A  K  F  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  N  K  S  T  *  V  L  L  S  I  K  V  T  G  Q  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  V  E  T  *  I  G  M  S  S  N  S  Q  F  N  L  R  P  V  A  N  E  E  D  I  Y  E  N  V  D  P  A  S  N  N  T  K  S  M  Q  S  Q  T  K  R  L  P  V  M  T  T   </first_frame>
            <second_frame>  Q  C  E  E  E  D  T  Y  S  *  P  L  P  Y  L  V  V  C  N  L  C  T  S  *  N  S  H  P  S  S  S  Q  I  T  L  E  H  P  K  G  M  H  L  V  *  *  N  L  Y  L  T  T  L  E  V  G  P  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  P  V  Q  D  R  C  R  S  Q  Y  L  Y  P  V  A  Y  Q  E  G  L  Q  E  T  H  L  K  T  H  G  L  P  K  P  T  Q  L  K  V  L  G  *  C  H  P  *  G  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  R  R  *  Y  E  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  Q  F  *  H  Y  N  P  I  S  Q  N  S  E  K  A  K  S  Y  P  E  L  H  Q  N  Q  P  F  L  R  *  T  S  L  H  K  Y  C  S  P  *  K  S  Q  D  K  T  Y  T  P  S  Q  L  S  Q  T  H  P  P  E  *  K  H  E  *  A  C  Q  A  I  H  N  L  I  *  D  Q  *  Q  M  R  K  I  Y  M  K  M  W  I  Q  R  Q  I  I  Q  N  P  C  N  H  K  P  K  D  Y  L  *  *  Q  H  </second_frame>
            <third_frame>   N  A  R  K  R  I  L  I  L  N  R  Y  L  I  *  L  S  V  I  Y  A  H  P  K  T  P  I  L  L  L  H  K  *  H  W  S  T  P  R  G  C  T  W  S  N  E  T  F  T  *  Q  L  L  K  L  G  L  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  R  F  K  I  D  A  E  V  N  I  S  I  R  W  H  T  R  K  V  C  R  K  H  I  *  K  L  T  D  Y  R  N  R  L  N  *  R  Y  L  G  S  V  I  P  E  V  C  Q  E  S  *  T  P  F  T  N  H  S  L  S  T  K  K  G  D  D  T  N  R  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  R  H  N  F  S  I  T  I  Q  Y  R  K  I  R  R  K  P  S  H  T  Q  N  Y  I  K  I  N  H  F  *  D  K  Q  V  Y  I  S  I  A  L  H  K  S  H  R  T  R  P  I  H  L  L  N  Y  H  R  L  T  H  R  S  R  N  M  N  R  H  V  K  Q  F  T  I  *  F  K  T  S  S  K  *  G  R  Y  I  *  K  C  G  S  S  V  K  *  Y  K  I  H  A  I  T  N  Q  K  I  T  C  D  D  N  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0115P13.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="162402" stop="162157"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSMQKSISLSGGIPGRSAGNTSKNSRTTETDSIEGTWVVSSLRCAKKAKHPLLTILLARRKEMIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 92 chains have been computed
$ 
$ memory statistics:
$ 75936 bytes spliced alignments in total
$ 20 spliced alignments have been stored
$ 3796 bytes was the average size of a spliced alignment
$ 22136 bytes predicted gene locations in total
$ 14 predicted gene locations have been stored
$ 1581 bytes was the average size of a predicted gene location
$ 13 megabytes was the average size of the backtrace matrix
$ 119 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-17 03:18:54
-->
