<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 23:37:15"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715835" ref_strand="+" ref_description="SGN-E715835 [FB15BF04]">
      <seq>gtgaagtgattagtttgaatcaacaaatcagaaattttgagaatgtgacattgccagagttggaggagcagacaaagtgtaaaagcaaagaatcattgaagaattacttgtttgttgtgggaagtggtggaaatgactactcactcaactacttcttgggcttagctaccaaaaatatcactattcaagactttactgctaatttgaccatgacactttctcaccaactcaagaggttgtatgatatgggagctagaaaatttgtgttgatggcattatatcccaatggttgcagcccaatggccagagctagaaatccaaatgccactggctgtatacagattttgaatgatgctgcacaactcttcaacactaacttgaggactttggttgattccccaactcttcaaatgcctgattccacaatagtcattgtcaatgcctacaaaatcattatggatatcttacaaaatcctactccttatggttttagtgataccaagaatccatgttgtgatgttgcaagaatagaagaaggtggaacaggaactttatgcaaaaacggagggattgtttgttcagataggaatgtgaatgtgtattttgatgggttgcatccaacagaagcagtgaacattgtgcttgctaataaggctttttcttccaatctcatagatgaagtctaccctacaaatgttcgtctcttatcacactaatttatcaaaccaacaatgtatttcgagttatgaaagagtatccatattatgttattcaaacaattatatgaagtgaacaattatacatgagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="+" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="2036" stop="4137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2336" g_stop="2568" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2569" i_stop="3135" i_length="567">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3136" g_stop="3388" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="486" r_length="253" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3389" i_stop="3508" i_length="120">
            <donor d_prob="0.725" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3509" g_stop="3839" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="817" r_length="331" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="+" ref_id="SGN-E715835" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2336" e_stop="2568"/>
          <exon e_start="3136" e_stop="3388"/>
          <exon e_start="3509" e_stop="3839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAGTGATTAGTTTGAATCAACAAATCAGAAATTTTGAGAATGTGACATTGCCAGAGTTGGAGGAGCAGACAAAGTGTAAAAGCAAAGAATCATTGAAGAATTACTTGTTTGTTGTGGGAAGTGGTGGAAATGACTACTCACTCAACTACTTCTTGGGCTTAGCTACCAAAAATATCACTATTCAAGACTTTACTGCTAATTTGACCATGACACTTTCTCACCAACTCAAGGTATGCATTTATACTGTGCTTTCTGTTTTATTTTTTATGCTATGAATGTTCGCTACATTACGACAAAAATAACTTTTAGCGGTAACAAATAAACATATTAGTAAAGAGTGCTAAAGTATTTAGCGGCATTAGTTAAGTGTCATTAGATTCAATGTCGCTAAAGCCTTTAAAAACACATACAAAAAGTGTTAATTACTGCTAAAAATATATATTTAACCACAGTTGCTAAAGCTCATTTTTGATGTAGTGAGCTATTTAAAATTGAGAATGAAATAAAAAAAGATTTACAAATATTTTGGTGGTATATAGTATATGTGAGTTGATTTCTAGATGATCACTCAACTAGTAGTGTTACTATCTCTGAAAGTTGTGTTGACATTACTTCCAACTTTCAAACATATACTCTAACAAGTCAATTTTTCAGCGAAGAGGATTCAGATGACCTAATTAGTTATGTCAATTAAATTAATACTTGGTCACATTTTAAGAATGATCACACATATGAAATATGGTGCTAACTAGTGTGACTAATCAAAGTACATAAATGTTTTGTTCATATTATTTCAGAGGTTGTATGATATGGGAGCTAGAAAATTTGTGTTGATGGCATTATATCCCAATGGTTGCAGCCCAATGGCCAGAGCTAGAAATCCAAATGCCACTGGCTGTATACAGATTTTGAATGATGCTGCACAACTCTTCAACACTAACTTGAGGACTTTGGTTGATTCCCCAACTCTTCAAATGCCTGATTCCACAATAGTCATTGTCAATGCCTACAAAATCATTATGGATATCTTACAAAATCCTACTCCTTATGGTCAGTCTCTATATGCGATACACTTTAACAGGATACACAGTTTAAGAATGAACGAACGAAATGAAACAACTTTTTTAACCAAATAAGTCAAAATTTGTGACATGTTATTTTTTTTTAAAGGTTTTAGTGATACCAAGAATCCATGTTGTGATGTTGCAAGAATAGAAGAAGGTGGAACAGGAACTTTATGCAAAAACGGAGGGATTGTTTGTTCAGATAGGAATGTGAATGTGTATTTTGATGGGTTGCATCCAACAGAAGCAGTGAACATTGTGCTTGCTAATAAGGCTTTTTCTTCCAATCTCATAGATGAAGTCTACCCTACAAATGTTCGTCTCTTATCACACTAATTTATCAAACCAACAATGTATTTCGAGTTATGAAAGAGTATCCATATTATGTTATTCAAACAAATATATGAGGTGAACAATTATACATGAGAAAATAAACT</genome_strand>
        <mrna_strand>GTGAAGTGATTAGTTTGAATCAACAAATCAGAAATTTTGAGAATGTGACATTGCCAGAGTTGGAGGAGCAGACAAAGTGTAAAAGCAAAGAATCATTGAAGAATTACTTGTTTGTTGTGGGAAGTGGTGGAAATGACTACTCACTCAACTACTTCTTGGGCTTAGCTACCAAAAATATCACTATTCAAGACTTTACTGCTAATTTGACCATGACACTTTCTCACCAACTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTGTATGATATGGGAGCTAGAAAATTTGTGTTGATGGCATTATATCCCAATGGTTGCAGCCCAATGGCCAGAGCTAGAAATCCAAATGCCACTGGCTGTATACAGATTTTGAATGATGCTGCACAACTCTTCAACACTAACTTGAGGACTTTGGTTGATTCCCCAACTCTTCAAATGCCTGATTCCACAATAGTCATTGTCAATGCCTACAAAATCATTATGGATATCTTACAAAATCCTACTCCTTATG........................................................................................................................GTTTTAGTGATACCAAGAATCCATGTTGTGATGTTGCAAGAATAGAAGAAGGTGGAACAGGAACTTTATGCAAAAACGGAGGGATTGTTTGTTCAGATAGGAATGTGAATGTGTATTTTGATGGGTTGCATCCAACAGAAGCAGTGAACATTGTGCTTGCTAATAAGGCTTTTTCTTCCAATCTCATAGATGAAGTCTACCCTACAAATGTTCGTCTCTTATCACACTAATTTATCAAACCAACAATGTATTTCGAGTTATGAAAGAGTATCCATATTATGTTATTCAAACAATTATATGAAGTGAACAATTATACATGAGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210155" ref_strand="-" ref_description="SGN-E210155 [cLEC-40-H18]">
      <seq>ccatgttgtgatgttgcaaaaataaaaaaaggtggaacaggaactttatgcaaaaacggagggattgtttgttcaaataggaatgtgaatgtgtattttgatgggttgcatccaacaaaagcagtgaacattgtgcttgctaataaggctttttcttccaatttcataaatgaagtctaccctacaaatgttcgtctcttatccccctaatttatcaaaccaacaatgtatttcgagttatgaaagagtatccatattatgttattcaaacaaatatatgaggtgaccaattatacatgagaaaataaactatgaatttcatatgaatggcttatatctataaaatatgagagtaacatccgaggcttttttttttaaaaaaaaaaaaaaaaaaaaaaaaaataaaaaaaaaaaaaaaaaaaaaaaaaaaaactcgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="+" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="3229" stop="14385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3529" g_stop="3903" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3904" i_stop="4312" i_length="409">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4313" g_stop="4385" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="448" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="+" ref_id="SGN-E210155" ref_strand="-">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210155" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="3529" e_stop="3903"/>
          <exon e_start="4313" e_stop="4385"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGTTGTGATGTTGCAAGAATAGAAGAAGGTGGAACAGGAACTTTATGCAAAAACGGAGGGATTGTTTGTTCAGATAGGAATGTGAATGTGTATTTTGATGGGTTGCATCCAACAGAAGCAGTGAACATTGTGCTTGCTAATAAGGCTTTTTCTTCCAATCTCATAGATGAAGTCTACCCTACAAATGTTCGTCTCTTATCACACTAATTTATCAAACCAACAATGTATTTCGAGTTATGAAAGAGTATCCATATTATGTTATTCAAACAAATATATGAGGTGAACAATTATACATGAGAAAATAAACTATGAATTTCATATGAATGGCTTATATCTATAAAATATGAGAGTAACATCCGAGGCTTATTATTTATTTAGTGAGTCGATAACCTGATTCAATATTTATTGTTTGATTCTCTATTAGAAAAAAAAAATATAGCAAATGTGTGTAATAGATCATCATGATAATTTAAGCGTCTAACTGACTTTTCGATACAAGTTTAAGGGTGAATCTATGCCTTTTCCCTAATATAATATATGAAGTTCCAGGCTCCATCAAAATATATGTCATGTGAGTATTGTTGATGATCAAAGAGTGTTTATTATGAAAGAATAAACTGGTTATTTATAATACCATGTCAGTATATGATATACGTCATGTGGAAATTATAAAGTATATTGAATAGTATTTTTATGAGAAAATTGTACGGAATAATAAACTATTAATTCAAATTAAGTGGTATAACTTATAATCATAGTTTCATTTAATTGTAATTCGTAGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>CCATGTTGTGATGTTGCAAAAATAAAAAAAGGTGGAACAGGAACTTTATGCAAAAACGGAGGGATTGTTTGTTCAAATAGGAATGTGAATGTGTATTTTGATGGGTTGCATCCAACAAAAGCAGTGAACATTGTGCTTGCTAATAAGGCTTTTTCTTCCAATTTCATAAATGAAGTCTACCCTACAAATGTTCGTCTCTTATCCCCCTAATTTATCAAACCAACAATGTATTTCGAGTTATGAAAGAGTATCCATATTATGTTATTCAAACAAATATATGAGGTGACCAATTATACATGAGAAAATAAACTATGAATTTCATATGAATGGCTTATATCTATAAAATATGAGAGTAACATCCGAGGCTTTTTTTTT.........................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539776" ref_strand="+" ref_description="SGN-E539776 [TUS-59-L10](-)">
      <seq>cgggcttttcctcatgggttttatctcgatattccctcccattttgaaggggaagaaaatattggaataaagctccccccagaaggccaattgggatccttttggaaagtaacttatagaagatatagtttaatttttttgtgggagcaaattggaggggcaggggcaagacatagcaagatagatttaatttgaaatctccatttgactgtccaatccacgggtagaataggggaaaacgttgtgttttttcccaaccccttatgttttcccctcggttagtcggtttttgacccgaatttccctgtagtattgtttaaggtaatgtcaaatgtagcagccagattttgatatgaattttgattcaagattgattttaaagtcatttccctgttcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggaaaaanttaaactcgagggggggcccgtacccaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22936" stop="7745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22636" g_stop="22240" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22239" i_stop="21082" i_length="1158">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.521" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21081" g_stop="21073" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="406" r_length="9" r_score="0.667"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21072" i_stop="19380" i_length="1693">
            <donor d_prob="0.074" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19379" g_stop="19293" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="493" r_length="87" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E539776" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22636" e_stop="22240"/>
          <exon e_start="21081" e_stop="21073"/>
          <exon e_start="19379" e_stop="19293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGCTCTTCCTCATTGGTTTTATCTCGATATTACCTACCATCTTGAAGAGGAAGAAAATATACGAATAAAGCTCCCCCCAGAAGGCCAATTCGGATCCTCTTGGAAAGTAACTTATAGAAGATATAGTTTAATTTTATTGTCGGAGCAAATTGGAGAGGCAGAGGCAAGACATAGCAAGATAGATCTAATTTGAAATCTACATTTGACTGTCCAATCCACTGGTAGAATAGTGGAAAACGTTGTGTTCTTTACCAACTCCTTATGTTTTACCCTCTGTTAGTCTGTTTCTGACCCGAACTTACCTGTAGTATTGTTTAAGGTAATGTCAAATGTAGCAGACAGATTTTGATATGAATTCTGATTCAAGATTGATCTTATAGTCATTTCACTGTTCAGTATTTTCTTCTTTGATCTTATGGTCATATCCCAACTGCCATGTTATAGATAGCTGCAACTTTGTTTAGAGCTTGTTTTTACTTTCTGAAAATTAATTCCCTCAAGTCTACGATAACGTGTTAGGTTTAACAATCTCTCAACCCTCAATTTACACATAAATGCTATGACATGAACAGACATGTCTGGTACTTGAGAAGAAGATAAAGAGGTCATAATAATCACTTGCAATTTAAGAAGATGATGAATGAGAGACATGTTTGGCCTAGTAAGTGCAAAGAATAACTGCTGTTCAGTCAAAAAGAGGTTTCTTCAATATTCAAAACTCAAGTACATTGCTCAACCAAATAATACATGCAAAGAAACAAAATGGATGGAAATTACAACAAAACATGAGGTTAAATGCGCCTTCCAAAACTCATTTCTGTCATTGCTTTCTCGGTCTATACAAAACTACATAATCCTGAAAGGCACTATTAAGCAGATGTTGAGAAAACAGCAATTTGGACGTAATTTTGAGCCTAAAAGTCACTTGGCTGCTTCTAGGTCTGCAAGGGTGACTGCTGGTGAATCTTGATAACCAGTAATGCCCATTATTCTTATCCGAGTAATTGGCTGCATGATTACAGAAACCGAATTAGTTTGGCATAAGCAAGGGCAAGTTATGATATTCTGCACAAATATCATTTTAAGGGGCATGTCTCATACATGGCTGTAAGCTCACTGATTTAGACAGTTTTCATGTTTGCATGGTAATTATTTGCAGACATAGTTAAAACTATGATAGACTACGGTGCGCCTTGCTTTAAGGGCAAACAGATAGGTTAAAAAAGTTCAAACTACTTTATAGTTATTCAGATATCACTAAAAACAGTTCTTTGATACCTGTCTGTGACCAATATTCCTTCTGTAGTTCTTTTTCTTCTTATACTTGAAGACGATAACCTTCTTATCTTTCAACTGCATGGAAATGTAATAATGAGCCAACAGATATGTCAAGTAAACAAGATATACTCAGTGGAAACTACAGCAGAGGAAGAATGATGTCTGACCTGCTCTTCAACAACAGCGTGGACTGTTGCATTTGGCACCACTGGTTTTCCAACCCAAGTACTTGTTTTTGTTCCCACAAGTAACACCTTGTTTAGGATAATCTGCAGAAGCAACAAGTATAGATGCTTCAACAATGATCCTCATTGTGGAAATTTTGAAATAAGAGTATTGCCAATATGGCAAGAAAACCTTGACATACACATATAACCCTTATATCAAGTGTTAGCTTCCGTGGAAAATAACTGGTGAAGACAATGTATTAAAGATAATAGAAATAGGACAAGCAAATGTCACTATTGGTTGAAATTGATGCCTTTTGACATAATTGAGAAATTGCTGCAAGCAAGTTCTTTTTGATTGGACACCACAATGTTGATATGAGATAGCGAGACAAGGAAAAAGAAAAACAACTCACGTAACTAAAGCCAAAGCCACAGAGAGGTAACCAGATTTTGGGAAATCAATTGTAAATTAAGACCAAAAATGCTCACTTTGTCATTGACATTTGCACCTTTAAGCCTCTGGGTGTAGATATACCGCCCAGGAAAAACAATATATTGCCGAGATCCAACCTATGAAAGCGAAAGAGCAAAAATGAACAAACAGCTTAACGTATTAAAGACAAGCCCCATAGAGTTATATTAGGGTAGTGTCACATTCATCTGAAAAAAAGAAAAAAGAACAAAATAAAGCACAAAATTTGACACCTAGAGGACTTGAAAATTGTTAGCAGCAGGAATAATGATCAGATTGAAATAGCAGCTATAATCTCCTCGCAAGAGTGAGTATTTTCCACATGGAAAAGAAAAAATATTCATCAAATAAGTAGTAAACATGAATGTTTTCTCCGGTTAAATACAATAGTTCACAATTCACATTAAATAAAAGATGAAAGTGTAGAATATGGCAACCTCAAAATCAAATTTCAACAATTACTAGACTTTTGCTTAAATGTTTGCATGGACTTGTAGATATGTATTCCCTCTGACAACTGTATAACACCTAAAGTTAGAACTAAATGATAGTTATCAGTTATTTATTAGTTATATTACTTCTAATCTGCCATATGAACCCCTTTGCAACTTAACTAGAGGAAACGCCTACCGAAAATAGATGGCCCACTTGTAAAACGAAATTAAACTAAAACCAAAGAGAACATAGACTGAGATTTTTGAAATTGGATGGTGTCCAGAACACAGGTAAGGATATACCAAGTACTAAATCTTCGTCATGTCTTCATAATAATTATAGTTTTCTGTTAACATCAGCCAACTCTACTGGAGAATACTAAGCATATAAAAAGTTCAGTTCAGCTTATTTAGCACGGACTATTTTAACATTTCCAATAGCCACCACCACTGCCAAGTCAATATGACACAAACATATAGACATGTGTATTGTTCCTTTAAGACACCCTAAAACAGAATGCTAAACCTAAGCATCACAGAATGGCATTGACGTATAAATAACAGAACGAAAGAATTTCATTGTAACACTCCCTATTTTCACCACATACACCATAGGAAGCAGTAATGTATCAACAGTACTAGCAAACACGAAATATGAACTAAGTGAGTGAGGTGTGGTGGAACATTCTTCATGAAAACAAATTTTTGGAACTTCTAATCCGTTTGACATAAAGGAAGTTTTCGTTCTAGTGGCAAAGGTTAATTCGAGAAATTGCTTCAATAATAGGTCTGAGTAATTTTGAATTCCCCTTATTAAAATTCCGACTGCTTTTGTGATATCAAAGGTTGAGCACATGACAATCTTGAACCAAAGTTGTGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAATA</genome_strand>
        <mrna_strand>CGGGCTTTTCCTCATGGGTTTTATCTCGATATTCCCTCCCATTTTGAAGGGGAAGAAAATATTGGAATAAAGCTCCCCCCAGAAGGCCAATTGGGATCCTTTTGGAAAGTAACTTATAGAAGATATAGTTTAATTTTTTTGTGGGAGCAAATTGGAGGGGCAGGGGCAAGACATAGCAAGATAGATTTAATTTGAAATCTCCATTTGACTGTCCAATCCACGGGTAGAATAGGGGAAAACGTTGTGTTTTTTCCCAACCCCTTATGTTTTCCCCTCGGTTAGTCGGTTTTTGACCCGAATTTCCCTGTAGTATTGTTTAAGGTAATGTCAAATGTAGCAGCCAGATTTTGATATGAATTTTGATTCAAGATTGATTTTAAAGTCATTTCCCTGTTCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAAAAANTTAAACTCGAGGGGGGGCCCGTACCCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370487" ref_strand="+" ref_description="SGN-E370487 [TUS-29-E11](-)">
      <seq>ggcttaaaggtgcaaatgtcaatgacaaaattatcctaaacaaggtgttacttgtgggaacaaaaaacaagtacttgggttggaaaaccagtggtgccaaatgcaacagtccacgctgttgttgaagagcagttgaaagacaagaaggttatcgtcttcaagtataagaagaaaaagaactacagaaggaatattggtcacagacagccaattactcggataagaataatgggcattactggttatcaagattcaccagcagtcacccttgcagacctagaagcagccaagtgacttttaggctcaaaattacgtccaaattgctgttttctcaacatctgcttaatagtgcctttcaggattatgtagttttgtatagaccgagaaagcaatgacagaaatgagttttggaaggcgcatttaacctcatgttctgttgtaatttccatccattttgtttctttgcatgtattatttggttgagcaatgtacttgagttttggatatttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="+" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20369" stop="22234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20669" g_stop="20697" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20698" i_stop="21087" i_length="390">
            <donor d_prob="0.927" d_score="0.00"/>
            <acceptor a_prob="0.731" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21088" g_stop="21189" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="132" r_length="103" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21190" i_stop="21281" i_length="92">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21282" g_stop="21356" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="207" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21357" i_stop="21626" i_length="270">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21627" g_stop="21934" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="515" r_length="308" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21935" i_stop="22154" i_length="220">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.077" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22155" g_stop="22164" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="525" r_length="10" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="+" ref_id="SGN-E370487" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20669" e_stop="20697"/>
          <exon e_start="21088" e_stop="21189"/>
          <exon e_start="21282" e_stop="21356"/>
          <exon e_start="21627" e_stop="21934"/>
          <exon e_start="22155" e_stop="22164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTAAAGGTGCAAATGTCAATGACAAAGTGAGCATTTTTGGTCTTAATTTACAATTGATTTCCCAAAATCTGGTTACCTCTCTGTGGCTTTGGCTTTAGTTACGTGAGTTGTTTTTCTTTTTCCTTGTCTCGCTATCTCATATCAACATTGTGGTGTCCAATCAAAAAGAACTTGCTTGCAGCAATTTCTCAATTATGTCAAAAGGCATCAATTTCAACCAATAGTGACATTTGCTTGTCCTATTTCTATTATCTTTAATACATTGTCTTCACCAGTTATTTTCCACGGAAGCTAACACTTGATATAAGGGTTATATGTGTATGTCAAGGTTTTCTTGCCATATTGGCAATACTCTTATTTCAAAATTTCCACAATGAGGATCATTGTTGAAGCATCTATACTTGTTGCTTCTGCAGATTATCCTAAACAAGGTGTTACTTGTGGGAAC-AAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAGGTCAGACATCATTCTTCCTCTGCTGTAGTTTCCACTGAGTATATCTTGTTTACTTGACATATCTGTTGGCTCATTATTACATTTCCATGCAGTTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAGGTATCAAAGAACTGTTTTTAGTGATATCTGAATAACTATAAAGTAGTTTGAACTTTTTTAACCTATCTGTTTGCCCTTAAAGCAAGGCGCACCGTAGTCTATCATAGTTTTAACTATGTCTGCAAATAATTACCATGCAAACATGAAAACTGTCTAAATCAGTGAGCTTACAGCCATGTATGAGACATGCCCCTTAAAATGATATTTGTGCAGAATATCATAACTTGCCCTTGCTTATGCCAAACTAATTCGGTTTCTGTAATCATGCAGCCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAAATTACGTCCAAATTGCTGTTTTCTCAACATCTGCTTAATAGTGCCTTTCAGGATTATGTAGTTTTGTATAGACCGAGAAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACCTCATGTTTTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGTTGAGCAATGTACTTGAGTTTTGAATATTGAAGAAACCTCTTTTTGACTGAACAGCAGTTATTCTTTGCACTTACTAGGCCAAACATGTCTCTCATTCATCATCTTCTTAAATTGCAAGTGATTATTATGACCTCTTTATCTTCTTCTCAAGTACCAGACATGTCTGTTCATGTCATAGCATTTATGTGTAAATTGAGGGTTGAGAGATTGTTAAACCTAACACGTTATCGTAGACTTGAGGGAATTAATTTTCAGAAAGTAAAAA</genome_strand>
        <mrna_strand>GGCTTAAAGGTGCAAATGTCAATGACAAA......................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAG............................................................................................TTGAAAGACAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAG..............................................................................................................................................................................................................................................................................CCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAAATTACGTCCAAATTGCTGTTTTCTCAACATCTGCTTAATAGTGCCTTTCAGGATTATGTAGTTTTGTATAGACCGAGAAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACCTCATGTTCTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGTTGAGCAATGTACTTGAGTTTTGGATATTTAAAAAA............................................................................................................................................................................................................................AAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203322" ref_strand="+" ref_description="SGN-E203322 [cLEB-3-J1](-)">
      <seq>acttgtgggaacaaaaacaagtacttgggttggaaaaccagtggtgccaaatgcaacagtccacgctgttgttgaagagcagttgaaagataagaaggttatcgtcttcaagtataagaagaaaaagaactacagaaggaatattggtcacagacagccaattactcggataagaataatgggcattactggttatcaagattcaccagcagtcacccttgcagacctagaagcagccaagtgacttttaggctcaaaattacgtccaaattgctgttttctcaacatctgcttaatagtgcctttcaggattatgtagttttgtatagaccgagaaagcaatgacagaaatgagttttggaaggcgcatttaacctcatgttttgttgtaatttccatccattttgtttctttgcatgtattatttggttgagcaatgtacttgagttttgaatattgaagaaacctctttttgactgaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="+" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20808" stop="22252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21108" g_stop="21189" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21190" i_stop="21281" i_length="92">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21282" g_stop="21356" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="157" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21357" i_stop="21626" i_length="270">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21627" g_stop="21952" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="483" r_length="326" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="484" polyA_stop="500"/>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="+" ref_id="SGN-E203322" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21108" e_stop="21189"/>
          <exon e_start="21282" e_stop="21356"/>
          <exon e_start="21627" e_stop="21952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAGGTCAGACATCATTCTTCCTCTGCTGTAGTTTCCACTGAGTATATCTTGTTTACTTGACATATCTGTTGGCTCATTATTACATTTCCATGCAGTTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAGGTATCAAAGAACTGTTTTTAGTGATATCTGAATAACTATAAAGTAGTTTGAACTTTTTTAACCTATCTGTTTGCCCTTAAAGCAAGGCGCACCGTAGTCTATCATAGTTTTAACTATGTCTGCAAATAATTACCATGCAAACATGAAAACTGTCTAAATCAGTGAGCTTACAGCCATGTATGAGACATGCCCCTTAAAATGATATTTGTGCAGAATATCATAACTTGCCCTTGCTTATGCCAAACTAATTCGGTTTCTGTAATCATGCAGCCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAAATTACGTCCAAATTGCTGTTTTCTCAACATCTGCTTAATAGTGCCTTTCAGGATTATGTAGTTTTGTATAGACCGAGAAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACCTCATGTTTTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGTTGAGCAATGTACTTGAGTTTTGAATATTGAAGAAACCTCTTTTTGACTGAACA</genome_strand>
        <mrna_strand>ACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAG............................................................................................TTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAG..............................................................................................................................................................................................................................................................................CCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAAATTACGTCCAAATTGCTGTTTTCTCAACATCTGCTTAATAGTGCCTTTCAGGATTATGTAGTTTTGTATAGACCGAGAAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACCTCATGTTTTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGTTGAGCAATGTACTTGAGTTTTGAATATTGAAGAAACCTCTTTTTGACTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E404889" ref_strand="+" ref_description="SGN-E404889 [PPC-15-N9]">
      <seq>caaaaacaagtacttgggttggaaaaccagtggtgccaaatgcaacagtccatgctgttgttgaagagcagttgaaagataagaaggttatcgtcttcaagtataagaagaaaaagaactacagaaggaacattggtcacagacagccaattactcggataagaataatgggcattactggttatcaagattcaccagcagtcacccttgcagacctagaagcagccaagtgacttttaggctcaagattacatccaaattactgttttctcaagattatgtagttttgtatagaccgaggaagcaatgacagaaatgagttttggaaggcgcatttaacttcatcttttgttgtaatttccatccattttgtttctttgcatgtattatttggttgagcaatgtacttgagttttgaatatttcagaaacctctttttgattgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="+" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20819" stop="22252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21119" g_stop="21189" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21190" i_stop="21281" i_length="92">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21282" g_stop="21356" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="146" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21357" i_stop="21626" i_length="270">
            <donor d_prob="0.946" d_score="0.98"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21627" g_stop="21952" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="448" r_length="302" r_score="0.896"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21953" i_stop="22154" i_length="202">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.077" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22155" g_stop="22166" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="460" r_length="12" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="+" ref_id="SGN-E404889" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.052" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E404889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21119" e_stop="21189"/>
          <exon e_start="21282" e_stop="21356"/>
          <exon e_start="21627" e_stop="21952"/>
          <exon e_start="22155" e_stop="22166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAGGTCAGACATCATTCTTCCTCTGCTGTAGTTTCCACTGAGTATATCTTGTTTACTTGACATATCTGTTGGCTCATTATTACATTTCCATGCAGTTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAGGTATCAAAGAACTGTTTTTAGTGATATCTGAATAACTATAAAGTAGTTTGAACTTTTTTAACCTATCTGTTTGCCCTTAAAGCAAGGCGCACCGTAGTCTATCATAGTTTTAACTATGTCTGCAAATAATTACCATGCAAACATGAAAACTGTCTAAATCAGTGAGCTTACAGCCATGTATGAGACATGCCCCTTAAAATGATATTTGTGCAGAATATCATAACTTGCCCTTGCTTATGCCAAACTAATTCGGTTTCTGTAATCATGCAGCCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAAATTACGTCCAAATTGCTGTTTTCTCAACATCTGCTTAATAGTGCCTTTCAGGATTATGTAGTTTTGTATAGACCGAGAAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACCTCATGTTTTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGTTGAGCAATGTACTTGAGTTTTGAATATTGAAGAAACCTCTTTTTGACTGAACAGCAGTTATTCTTTGCACTTACTAGGCCAAACATGTCTCTCATTCATCATCTTCTTAAATTGCAAGTGATTATTATGACCTCTTTATCTTCTTCTCAAGTACCAGACATGTCTGTTCATGTCATAGCATTTATGTGTAAATTGAGGGTTGAGAGATTGTTAAACCTAACACGTTATCGTAGACTTGAGGGAATTAATTTTCAGAAAGTAAAAACA</genome_strand>
        <mrna_strand>CAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCATGCTGTTGTTGAAGAGCAG............................................................................................TTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAACATTGGTCACAGACAG..............................................................................................................................................................................................................................................................................CCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAGATTACATCCAAA---------T-T----A-CTG-TT--T--T--C--TCAAGATTATGTAGTTTTGTATAGACCGAGGAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACTTCATCTTTTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGTTGAGCAATGTACTTGAGTTTTGAATATTTCAGAAACCTCTTTTTGATTGAAAA..........................................................................................................................................................................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E234545" ref_strand="+" ref_description="SGN-E234545 [cLEL-6-J9](-)">
      <seq>aaaccagtggtgccaaatgcaacagtccacgctgttgttgaagagcagttgaaagataagaaggttatcgtcttcaagtataagaagaaaaagaactacagaaggaatattggtcacagacagccaattactcggataagaataatgggcattactggttatcaagattcaccagcagtcacccttgcagacctagaagcagccaagtgacttttaggctcaaaattacgtccaaattgctgttttctcaacatctgcttaatagtgcctttcaggattatgtagttttgtatagaccgagaaagcaatgacagaaatgagttttggaaggcgcatttaacctcatgttttgttgtaatttccatccattttgtttctttgcatgtattatttggttgagcaatgtacttgagttttgaatattgaagaaacctctttttgactgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="+" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20842" stop="22252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21142" g_stop="21189" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21190" i_stop="21281" i_length="92">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21282" g_stop="21356" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="123" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21357" i_stop="21626" i_length="270">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21627" g_stop="21952" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="449" r_length="326" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="450" polyA_stop="463"/>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="+" ref_id="SGN-E234545" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21142" e_stop="21189"/>
          <exon e_start="21282" e_stop="21356"/>
          <exon e_start="21627" e_stop="21952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAGGTCAGACATCATTCTTCCTCTGCTGTAGTTTCCACTGAGTATATCTTGTTTACTTGACATATCTGTTGGCTCATTATTACATTTCCATGCAGTTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAGGTATCAAAGAACTGTTTTTAGTGATATCTGAATAACTATAAAGTAGTTTGAACTTTTTTAACCTATCTGTTTGCCCTTAAAGCAAGGCGCACCGTAGTCTATCATAGTTTTAACTATGTCTGCAAATAATTACCATGCAAACATGAAAACTGTCTAAATCAGTGAGCTTACAGCCATGTATGAGACATGCCCCTTAAAATGATATTTGTGCAGAATATCATAACTTGCCCTTGCTTATGCCAAACTAATTCGGTTTCTGTAATCATGCAGCCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAAATTACGTCCAAATTGCTGTTTTCTCAACATCTGCTTAATAGTGCCTTTCAGGATTATGTAGTTTTGTATAGACCGAGAAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACCTCATGTTTTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGTTGAGCAATGTACTTGAGTTTTGAATATTGAAGAAACCTCTTTTTGACTGAACA</genome_strand>
        <mrna_strand>AAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAG............................................................................................TTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAG..............................................................................................................................................................................................................................................................................CCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAAATTACGTCCAAATTGCTGTTTTCTCAACATCTGCTTAATAGTGCCTTTCAGGATTATGTAGTTTTGTATAGACCGAGAAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACCTCATGTTTTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGTTGAGCAATGTACTTGAGTTTTGAATATTGAAGAAACCTCTTTTTGACTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292748" ref_strand="+" ref_description="SGN-E292748 [cLET-11-B14]">
      <seq>gggctgcaggcaaatgcaacactccacgctgttgttgaagagcagttgaaagataagaaggttatcgtcttcaagtataagaagaaaaagaactacagaaggaatattggtcacagacagccaattactcggataagaataatgggcattactggttatcaagattcaccagcagtcacccttgcagacctagaagcagccaagtgacttttaggctcaaaattacatccaaattgctgttttctcaacatctgcttaatagtgcctttcaggattatgtagttttgtatagaccgagaaagcaatgacagaaatgagttttggaaggcgcatttaacctcatgttttgttgtaatttccatccattttgtttctttgcatgtattatttgggtgagcaatgtacttgagttttgaatattgaagaaacctctttttgactgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="+" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20849" stop="22252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21149" g_stop="21189" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="45" r_length="41" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21190" i_stop="21281" i_length="92">
            <donor d_prob="0.994" d_score="0.90"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21282" g_stop="21356" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="120" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21357" i_stop="21626" i_length="270">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21627" g_stop="21959" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="453" r_length="333" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="+" ref_id="SGN-E292748" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21149" e_stop="21189"/>
          <exon e_start="21282" e_stop="21356"/>
          <exon e_start="21627" e_stop="21959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAGGTCAGACATCATTCTTCCTCTGCTGTAGTTTCCACTGAGTATATCTTGTTTACTTGACATATCTGTTGGCTCATTATTACATTTCCATGCAGTTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAGGTATCAAAGAACTGTTTTTAGTGATATCTGAATAACTATAAAGTAGTTTGAACTTTTTTAACCTATCTGTTTGCCCTTAAAGCAAGGCGCACCGTAGTCTATCATAGTTTTAACTATGTCTGCAAATAATTACCATGCAAACATGAAAACTGTCTAAATCAGTGAGCTTACAGCCATGTATGAGACATGCCCCTTAAAATGATATTTGTGCAGAATATCATAACTTGCCCTTGCTTATGCCAAACTAATTCGGTTTCTGTAATCATGCAGCCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAAATTACGTCCAAATTGCTGTTTTCTCAACATCTGCTTAATAGTGCCTTTCAGGATTATGTAGTTTTGTATAGACCGAGAAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACCTCATGTTTTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGTTGAGCAATGTACTTGAGTTTTGAATATTGAAGAAACCTCTTTTTGACTGAACAGCAGTTA</genome_strand>
        <mrna_strand>TGCAGGCAAATGCAACACTCCACGCTGTTGTTGAAGAGCAG............................................................................................TTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAG..............................................................................................................................................................................................................................................................................CCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAAATTACATCCAAATTGCTGTTTTCTCAACATCTGCTTAATAGTGCCTTTCAGGATTATGTAGTTTTGTATAGACCGAGAAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACCTCATGTTTTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGGTGAGCAATGTACTTGAGTTTTGAATATTGAAGAAACCTCTTTTTGACTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289775" ref_strand="+" ref_description="SGN-E289775 [cLET-9-A14]">
      <seq>aaatgcaacagtccacgctgttgttgaagagcagttgaaagataagaaggttatcgtcttcaagtataagaagaaaaagaactacagaaggaatattggtcacagacagccaattactcggataagaataatgggcattactggttatcaagattcaccagcagtcacccttgcagacctagaagcagccaagtgacttttaggctcaaaattacgtccaaattgctgttttctcaacatctgcttaatagtgcctttcaggattatgtagttttgtatagaccgagaaagcaatgacagaaatgagttttggaaggcgcatttaacctcatgttttgttgtaatttccatccattttgtttctttgcatgtattatttgggtgagcaatgtacttgagttttgaatattgaagaaacctctttttgactgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="+" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20856" stop="22252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21156" g_stop="21189" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21190" i_stop="21281" i_length="92">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21282" g_stop="21356" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="109" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21357" i_stop="21626" i_length="270">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21627" g_stop="21959" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="442" r_length="333" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="+" ref_id="SGN-E289775" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21156" e_stop="21189"/>
          <exon e_start="21282" e_stop="21356"/>
          <exon e_start="21627" e_stop="21959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGCAACAGTCCACGCTGTTGTTGAAGAGCAGGTCAGACATCATTCTTCCTCTGCTGTAGTTTCCACTGAGTATATCTTGTTTACTTGACATATCTGTTGGCTCATTATTACATTTCCATGCAGTTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAGGTATCAAAGAACTGTTTTTAGTGATATCTGAATAACTATAAAGTAGTTTGAACTTTTTTAACCTATCTGTTTGCCCTTAAAGCAAGGCGCACCGTAGTCTATCATAGTTTTAACTATGTCTGCAAATAATTACCATGCAAACATGAAAACTGTCTAAATCAGTGAGCTTACAGCCATGTATGAGACATGCCCCTTAAAATGATATTTGTGCAGAATATCATAACTTGCCCTTGCTTATGCCAAACTAATTCGGTTTCTGTAATCATGCAGCCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAAATTACGTCCAAATTGCTGTTTTCTCAACATCTGCTTAATAGTGCCTTTCAGGATTATGTAGTTTTGTATAGACCGAGAAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACCTCATGTTTTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGTTGAGCAATGTACTTGAGTTTTGAATATTGAAGAAACCTCTTTTTGACTGAACAGCAGTTA</genome_strand>
        <mrna_strand>AAATGCAACAGTCCACGCTGTTGTTGAAGAGCAG............................................................................................TTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAG..............................................................................................................................................................................................................................................................................CCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAAATTACGTCCAAATTGCTGTTTTCTCAACATCTGCTTAATAGTGCCTTTCAGGATTATGTAGTTTTGTATAGACCGAGAAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACCTCATGTTTTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGGTGAGCAATGTACTTGAGTTTTGAATATTGAAGAAACCTCTTTTTGACTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E615769" ref_strand="-" ref_description="SGN-E615769 [65571]">
      <seq>gttgaaagataagaaggtgatagtcttcaagtataagaagaaaaaaaattacagaaggaacatgggtcacagacagccaattactcggataagaataatgggcattactggttatcaagattcaccagcagtcacccttgcagacctagaagcagccaagtgacttttaggctcaagattacatccaaattactgttttctcaggattatgtanttttgtatagaccgaggaagcaatgacagaaatgagttttggaaggcgcatttaacttcatcttttgttgtaatttccatccattttgtttctttgcatgtattatttggttgagcaatgtacttgagttttgaataaaaaaaaataaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="+" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20981" stop="22225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21281" g_stop="21356" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21357" i_stop="21626" i_length="270">
            <donor d_prob="0.946" d_score="0.92"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21627" g_stop="21924" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="350" r_length="274" r_score="0.899"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="351" polyA_stop="380"/>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="+" ref_id="SGN-E615769" ref_strand="-">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E615769" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="21281" e_stop="21356"/>
          <exon e_start="21627" e_stop="21924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAGGTATCAAAGAACTGTTTTTAGTGATATCTGAATAACTATAAAGTAGTTTGAACTTTTTTAACCTATCTGTTTGCCCTTAAAGCAAGGCGCACCGTAGTCTATCATAGTTTTAACTATGTCTGCAAATAATTACCATGCAAACATGAAAACTGTCTAAATCAGTGAGCTTACAGCCATGTATGAGACATGCCCCTTAAAATGATATTTGTGCAGAATATCATAACTTGCCCTTGCTTATGCCAAACTAATTCGGTTTCTGTAATCATGCAGCCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAAATTACGTCCAAATTGCTGTTTTCTCAACATCTGCTTAATAGTGCCTTTCAGGATTATGTAGTTTTGTATAGACCGAGAAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACCTCATGTTTTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGTTGAGCAATGTACTTGAGTTTTGAAT</genome_strand>
        <mrna_strand>GTTGAAAGATAAGAAGGTGATAGTCTTCAAGTATAAGAAGAAAAAAAATTACAGAAGGAACATGGGTCACAGACAG..............................................................................................................................................................................................................................................................................CCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAGATTACATCCAAA---------T-T----A-CTG-TT--T--T--C--TCAGGATTATGTANTTTTGTATAGACCGAGGAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACTTCATCTTTTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGTTGAGCAATGTACTTGAGTTTTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235217" ref_strand="+" ref_description="SGN-E235217 [cLEL-6-J9](-)">
      <seq>ggttatcgtcttcaagtataagaagaaaaagaactacagaaggaatattggtcacagacagccaattactcggataagaataatgggcattactggttatcaagattcaccagcagtcacccttgcagacctagaagcagccaagtgacttttaggctcaaaattacgtccaaattgctgttttctcaacatctgcttaatagtgcctttcaggattatgtagttttgtatagaccgagaaagcaatgacagaaatgagttttggaaggcgcatttaacctcatgttttgttgtaatttccatccattttgtttctttgcatgtattatttggttgagcaatgtacttgagttttgaatattgaagaaacctctttttgactgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="+" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20996" stop="22252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21296" g_stop="21356" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21357" i_stop="21626" i_length="270">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21627" g_stop="21952" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="387" r_length="326" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="388" polyA_stop="401"/>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="+" ref_id="SGN-E235217" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235217" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21296" e_stop="21356"/>
          <exon e_start="21627" e_stop="21952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAGGTATCAAAGAACTGTTTTTAGTGATATCTGAATAACTATAAAGTAGTTTGAACTTTTTTAACCTATCTGTTTGCCCTTAAAGCAAGGCGCACCGTAGTCTATCATAGTTTTAACTATGTCTGCAAATAATTACCATGCAAACATGAAAACTGTCTAAATCAGTGAGCTTACAGCCATGTATGAGACATGCCCCTTAAAATGATATTTGTGCAGAATATCATAACTTGCCCTTGCTTATGCCAAACTAATTCGGTTTCTGTAATCATGCAGCCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAAATTACGTCCAAATTGCTGTTTTCTCAACATCTGCTTAATAGTGCCTTTCAGGATTATGTAGTTTTGTATAGACCGAGAAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACCTCATGTTTTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGTTGAGCAATGTACTTGAGTTTTGAATATTGAAGAAACCTCTTTTTGACTGAACA</genome_strand>
        <mrna_strand>GGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAG..............................................................................................................................................................................................................................................................................CCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAAATTACGTCCAAATTGCTGTTTTCTCAACATCTGCTTAATAGTGCCTTTCAGGATTATGTAGTTTTGTATAGACCGAGAAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACCTCATGTTTTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGTTGAGCAATGTACTTGAGTTTTGAATATTGAAGAAACCTCTTTTTGACTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392626" ref_strand="+" ref_description="SGN-E392626 [TUS-35-L4](-)">
      <seq>ctcaaaattacgtccaatttgctgttttctcaacatttgcttaatagtgcctttcaggattatgtagttttgtatagaccgagaaagcaatgacagaaatgagttttggaaggcgcatttaacctcatgttttgttgaaatttccatccattttgtttctttgcatgtattatttggttgagcaatgtacttgagttttgaatattgaaaaaacctctttttgactgaacacgcagttattctttgcaaatagtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="+" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21422" stop="22275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21722" g_stop="21965" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="255" polyA_stop="270"/>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="+" ref_id="SGN-E392626" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>244</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21722" e_stop="21965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAAATTACGTCCAAATTGCTGTTTTCTCAACATCTGCTTAATAGTGCCTTTCAGGATTATGTAGTTTTGTATAGACCGAGAAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACCTCATGTTTTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGTTGAGCAATGTACTTGAGTTTTGAATATTGAAGAAACCTCTTTTTGACTGAACA-GCAGTTATTCTTT</genome_strand>
        <mrna_strand>CTCAAAATTACGTCCAATTTGCTGTTTTCTCAACATTTGCTTAATAGTGCCTTTCAGGATTATGTAGTTTTGTATAGACCGAGAAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACCTCATGTTTTGTTGAAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGTTGAGCAATGTACTTGAGTTTTGAATATTGAAAAAACCTCTTTTTGACTGAACACGCAGTTATTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392633" ref_strand="+" ref_description="SGN-E392633 [TUS-35-N6](-)">
      <seq>attacgttcaaattgcggttttctcaacatttgcttaatagtgcctttcaggattatgtagttttgtatagaccgagaaagcaatgacagaaatgagttttggaaggcgcatttaacctcatgttttgttgtaatttccatccattttgtttctttgcatgtattatttggttgagcaatgtacttgagttttgaatattgaaaaaacctctttttgactgaacacgcagttattctttgcaataagtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="+" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21428" stop="22275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21728" g_stop="21965" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="249" polyA_stop="264"/>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="+" ref_id="SGN-E392633" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21728" e_stop="21965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACGTCCAAATTGCTGTTTTCTCAACATCTGCTTAATAGTGCCTTTCAGGATTATGTAGTTTTGTATAGACCGAGAAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACCTCATGTTTTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGTTGAGCAATGTACTTGAGTTTTGAATATTGAAGAAACCTCTTTTTGACTGAACA-GCAGTTATTCTTT</genome_strand>
        <mrna_strand>ATTACGTTCAAATTGCGGTTTTCTCAACATTTGCTTAATAGTGCCTTTCAGGATTATGTAGTTTTGTATAGACCGAGAAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACCTCATGTTTTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGTTGAGCAATGTACTTGAGTTTTGAATATTGAAAAAACCTCTTTTTGACTGAACACGCAGTTATTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539778" ref_strand="+" ref_description="SGN-E539778 [TUS-59-L10]">
      <seq>gctggttgtggcctgaaaaattgagattcttccaggcagagatagccaagcgtcgggataagttgctcaactatatgttgtttctgagaataactccaacattgccaaatcttttcatcaacttggcatctccaatagtggatataccattccatattttcttctcggccacattggttggtctcattccagccgcatatattacagtcaaggctggcctagctcttggtgagctgaagtctgttaaagatctatacgatctgaagaccttgtccgtgctcttcctcattggttttatctcgatattacctaccatcttgaagaggaagaaaatatacgaataaagctccccccagaaggccaattcggatcctcttggaaagtaacttatagaagatatagtttaattttattgtcggagcaaattggagaggcagaggcaagacatagcaagatagatctaatttgaaatctacatttgactgtccaatccactggtagaatagtggaaaacgttgtgttctttaccaactccttatgttttaccctctgttagtctgtttctgacccgaacttacctgtagtattgtttaaggtaatgtcaaatgtagcagacagattttgatatgaattctgatttcagattgatcttatagtcatttcactgttcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24101" stop="21940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23801" g_stop="23761" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23760" i_stop="23656" i_length="105">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23655" g_stop="23485" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="212" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23484" i_stop="22699" i_length="786">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22698" g_stop="22238" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="673" r_length="461" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E539778" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23801" e_stop="23761"/>
          <exon e_start="23655" e_stop="23485"/>
          <exon e_start="22698" e_stop="22238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGTTGTGGCCTGAAAAATTGAGATTCTTCCAGGCAGAGGTTTGTGATGTTCTGAAACTGTTTACTGTTAATGTGCTGCTGATCTTCTAATGTCATGCTTCCTTCATTTTCTGGCACATAGTAATGTGTAACATGTGGTTTCAGATAGCCAAGCGTCGGGATAAGTTGCTCAACTATATGTTGTTTCTGAGAATAACTCCAACATTGCCAAATCTTTTCATCAACTTGGCATCTCCAATAGTGGATATACCATTCCATATTTTCTTCTCGGCCACATTGGTTGGTCTCATTCCAGCCGCATATATTACAGTCAAGGTAAACTTTCTTCAGCTGGTGGTGGTTTTCCCCGTCATGCTTGTCCGTATTTGATGTCTTTCAACTGTATTACTCAATTTTGCTCTGAAATGATTGGTATAATGCATCTAGAGGACATGCTTTCTTAAAAAAGTAATTATCTTCCTTTGTGTGGTGACTCTCTTACAACAACATACCCTGTGAAATCTCACAGTTGGGTGTGGGAGGTTTGAGTCGGGAGTGTATGCAGCCCCTACTCGTGGAGGTAAAGAGGCTATTTCCCAACTCTCTAACCATCCAAATACTCTTTTAAAAAACGCAAGAAGCTGACGGCGTATTCTCTTTATAAATGGGTAAATCAGTTCCAGGATGTCATGCTTGGCACTAGTATAGATGTTGCAATAAATGGTAGAAGTACACCAACACAATCTAACTTTGGTAGCATTTAGAGTTAGCCTCTTCAGGTGATGTGGAGTCCCATAATGTGATAGTAATGGTGAAGGTTCTTTGTGTGTTACTTCCATAAAAAGACAAAAACTATACTTGGTGCGTACATTAATTAAAAAATCATCAAGCTCATTTTCTGAAATTGAGTTAAAATCATGTGAGCTGTTGACGGCAGCATATCATCTAAAACTATCCAAGTGAATAATTTGGCAATGCATCTCTCTTGTCTTGTCTATGAACTAACTAAGATGATACATCTTTTGTTGAAGTTCGCAGTGCCAATATCACTTGTGAGACCTGAGTAATCACTCCAGTATATTTTTGTAATCTCATATGTGATGTTTTATTTTAACTTGTCAGGCTGGCCTAGCTCTTGGTGAGCTGAAGTCTGTTAAAGATCTATACGATCTGAAGACCTTGTCCGTGCTCTTCCTCATTGGTTTTATCTCGATATTACCTACCATCTTGAAGAGGAAGAAAATATACGAATAAAGCTCCCCCCAGAAGGCCAATTCGGATCCTCTTGGAAAGTAACTTATAGAAGATATAGTTTAATTTTATTGTCGGAGCAAATTGGAGAGGCAGAGGCAAGACATAGCAAGATAGATCTAATTTGAAATCTACATTTGACTGTCCAATCCACTGGTAGAATAGTGGAAAACGTTGTGTTCTTTACCAACTCCTTATGTTTTACCCTCTGTTAGTCTGTTTCTGACCCGAACTTACCTGTAGTATTGTTTAAGGTAATGTCAAATGTAGCAGACAGATTTTGATATGAATTCTGATTCAAGATTGATCTTATAGTCATTTCACTGTTCAGT</genome_strand>
        <mrna_strand>GCTGGTTGTGGCCTGAAAAATTGAGATTCTTCCAGGCAGAG.........................................................................................................ATAGCCAAGCGTCGGGATAAGTTGCTCAACTATATGTTGTTTCTGAGAATAACTCCAACATTGCCAAATCTTTTCATCAACTTGGCATCTCCAATAGTGGATATACCATTCCATATTTTCTTCTCGGCCACATTGGTTGGTCTCATTCCAGCCGCATATATTACAGTCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGCCTAGCTCTTGGTGAGCTGAAGTCTGTTAAAGATCTATACGATCTGAAGACCTTGTCCGTGCTCTTCCTCATTGGTTTTATCTCGATATTACCTACCATCTTGAAGAGGAAGAAAATATACGAATAAAGCTCCCCCCAGAAGGCCAATTCGGATCCTCTTGGAAAGTAACTTATAGAAGATATAGTTTAATTTTATTGTCGGAGCAAATTGGAGAGGCAGAGGCAAGACATAGCAAGATAGATCTAATTTGAAATCTACATTTGACTGTCCAATCCACTGGTAGAATAGTGGAAAACGTTGTGTTCTTTACCAACTCCTTATGTTTTACCCTCTGTTAGTCTGTTTCTGACCCGAACTTACCTGTAGTATTGTTTAAGGTAATGTCAAATGTAGCAGACAGATTTTGATATGAATTCTGATTTCAGATTGATCTTATAGTCATTTCACTGTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396947" ref_strand="+" ref_description="SGN-E396947 [TUS-44-F13](-)">
      <seq>ttttttctgtttaaattaattggcagacctttggttagctggtgggggcctgaaaaattgagattcttccaggcagagatagccaagcgtcgggataagttgctcaactatatgttgtttctgagaataactccaacattgccaaatcttttcatcaacttggcatctccaatagtggatataccattccatattttcttctcggccacattggttggtctcattccagccgcatatattacagtcaaggctggcctagctcttggtgagctgaagtctgttaaagatctatacgatctgaagaccttgtccgtgctcttcctcattggttttatctcgatattacctaccatcttgaagaggaagaaaatatacgaataaagctccccccagaaggccaattcggatcctcttggaaagtaacttatagaagatatagtttaattttattgtcggagcaaattggagaggcagaggcaagacatagcaagatagatctaatttgaaatctacatttgactgtccaatccactggtagaatagtggaaaacgttgtgttctttaccaactccttatgttttaccctctgttagtctgtttttgacccgaacttacctgtagtattgtttaaggtaatgtcaaatgtagcagacagattttgatatgaattctgattcaagattgatcttatagtcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24138" stop="21952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23838" g_stop="23761" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23760" i_stop="23656" i_length="105">
            <donor d_prob="0.970" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23655" g_stop="23485" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="249" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23484" i_stop="22699" i_length="786">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22698" g_stop="22253" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="695" r_length="446" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="696" polyA_stop="705"/>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E396947" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23838" e_stop="23761"/>
          <exon e_start="23655" e_stop="23485"/>
          <exon e_start="22698" e_stop="22253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTGTCTAAATTAATTGGCAGACCTTTGGTTAGCTGGTTGTGGCCTGAAAAATTGAGATTCTTCCAGGCAGAGGTTTGTGATGTTCTGAAACTGTTTACTGTTAATGTGCTGCTGATCTTCTAATGTCATGCTTCCTTCATTTTCTGGCACATAGTAATGTGTAACATGTGGTTTCAGATAGCCAAGCGTCGGGATAAGTTGCTCAACTATATGTTGTTTCTGAGAATAACTCCAACATTGCCAAATCTTTTCATCAACTTGGCATCTCCAATAGTGGATATACCATTCCATATTTTCTTCTCGGCCACATTGGTTGGTCTCATTCCAGCCGCATATATTACAGTCAAGGTAAACTTTCTTCAGCTGGTGGTGGTTTTCCCCGTCATGCTTGTCCGTATTTGATGTCTTTCAACTGTATTACTCAATTTTGCTCTGAAATGATTGGTATAATGCATCTAGAGGACATGCTTTCTTAAAAAAGTAATTATCTTCCTTTGTGTGGTGACTCTCTTACAACAACATACCCTGTGAAATCTCACAGTTGGGTGTGGGAGGTTTGAGTCGGGAGTGTATGCAGCCCCTACTCGTGGAGGTAAAGAGGCTATTTCCCAACTCTCTAACCATCCAAATACTCTTTTAAAAAACGCAAGAAGCTGACGGCGTATTCTCTTTATAAATGGGTAAATCAGTTCCAGGATGTCATGCTTGGCACTAGTATAGATGTTGCAATAAATGGTAGAAGTACACCAACACAATCTAACTTTGGTAGCATTTAGAGTTAGCCTCTTCAGGTGATGTGGAGTCCCATAATGTGATAGTAATGGTGAAGGTTCTTTGTGTGTTACTTCCATAAAAAGACAAAAACTATACTTGGTGCGTACATTAATTAAAAAATCATCAAGCTCATTTTCTGAAATTGAGTTAAAATCATGTGAGCTGTTGACGGCAGCATATCATCTAAAACTATCCAAGTGAATAATTTGGCAATGCATCTCTCTTGTCTTGTCTATGAACTAACTAAGATGATACATCTTTTGTTGAAGTTCGCAGTGCCAATATCACTTGTGAGACCTGAGTAATCACTCCAGTATATTTTTGTAATCTCATATGTGATGTTTTATTTTAACTTGTCAGGCTGGCCTAGCTCTTGGTGAGCTGAAGTCTGTTAAAGATCTATACGATCTGAAGACCTTGTCCGTGCTCTTCCTCATTGGTTTTATCTCGATATTACCTACCATCTTGAAGAGGAAGAAAATATACGAATAAAGCTCCCCCCAGAAGGCCAATTCGGATCCTCTTGGAAAGTAACTTATAGAAGATATAGTTTAATTTTATTGTCGGAGCAAATTGGAGAGGCAGAGGCAAGACATAGCAAGATAGATCTAATTTGAAATCTACATTTGACTGTCCAATCCACTGGTAGAATAGTGGAAAACGTTGTGTTCTTTACCAACTCCTTATGTTTTACCCTCTGTTAGTCTGTTTCTGACCCGAACTTACCTGTAGTATTGTTTAAGGTAATGTCAAATGTAGCAGACAGATTTTGATATGAATTCTGATTCAAGATTGATCTTATAGTC</genome_strand>
        <mrna_strand>TTTTTTCTGTTTAAATTAATTGGCAGACCTTTGGTTAGCTGGTGGGGGCCTGAAAAATTGAGATTCTTCCAGGCAGAG.........................................................................................................ATAGCCAAGCGTCGGGATAAGTTGCTCAACTATATGTTGTTTCTGAGAATAACTCCAACATTGCCAAATCTTTTCATCAACTTGGCATCTCCAATAGTGGATATACCATTCCATATTTTCTTCTCGGCCACATTGGTTGGTCTCATTCCAGCCGCATATATTACAGTCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGCCTAGCTCTTGGTGAGCTGAAGTCTGTTAAAGATCTATACGATCTGAAGACCTTGTCCGTGCTCTTCCTCATTGGTTTTATCTCGATATTACCTACCATCTTGAAGAGGAAGAAAATATACGAATAAAGCTCCCCCCAGAAGGCCAATTCGGATCCTCTTGGAAAGTAACTTATAGAAGATATAGTTTAATTTTATTGTCGGAGCAAATTGGAGAGGCAGAGGCAAGACATAGCAAGATAGATCTAATTTGAAATCTACATTTGACTGTCCAATCCACTGGTAGAATAGTGGAAAACGTTGTGTTCTTTACCAACTCCTTATGTTTTACCCTCTGTTAGTCTGTTTTTGACCCGAACTTACCTGTAGTATTGTTTAAGGTAATGTCAAATGTAGCAGACAGATTTTGATATGAATTCTGATTCAAGATTGATCTTATAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395538" ref_strand="+" ref_description="SGN-E395538 [TUS-43-E14](-)">
      <seq>cattccagccgcatatattacagtcaaggctggcctagctcttggtgagctgaagtctgttaaagatctatacgatctgaagaccttgtccgtgctcttcctcattggttttatctcgatattacctaccatcttgaagaggaagaaaatatacgaataaagctccccccagaaggccaattcggatcctcttggaaagtaacttatagaagatatagtttaattttattgtcggagcaaattggagaggcagaggcaagacatagcaagatagatctaatttgaaatctacatttgactgtccaatccactggtagaatagtggaaaacgttgtgttctttaccaactccttatgttttaccctctgttagtctgtttctgacccgaacttacctgtagtattgtttaaggtaatgtcaaatgtagcagacagattttgatatgaattctgattcaagattgatcttatagtcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="23812" stop="21952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23512" g_stop="23485" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23484" i_stop="22699" i_length="786">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22698" g_stop="22253" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="474" r_length="446" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="475" polyA_stop="484"/>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E395538" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23512" e_stop="23485"/>
          <exon e_start="22698" e_stop="22253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCCAGCCGCATATATTACAGTCAAGGTAAACTTTCTTCAGCTGGTGGTGGTTTTCCCCGTCATGCTTGTCCGTATTTGATGTCTTTCAACTGTATTACTCAATTTTGCTCTGAAATGATTGGTATAATGCATCTAGAGGACATGCTTTCTTAAAAAAGTAATTATCTTCCTTTGTGTGGTGACTCTCTTACAACAACATACCCTGTGAAATCTCACAGTTGGGTGTGGGAGGTTTGAGTCGGGAGTGTATGCAGCCCCTACTCGTGGAGGTAAAGAGGCTATTTCCCAACTCTCTAACCATCCAAATACTCTTTTAAAAAACGCAAGAAGCTGACGGCGTATTCTCTTTATAAATGGGTAAATCAGTTCCAGGATGTCATGCTTGGCACTAGTATAGATGTTGCAATAAATGGTAGAAGTACACCAACACAATCTAACTTTGGTAGCATTTAGAGTTAGCCTCTTCAGGTGATGTGGAGTCCCATAATGTGATAGTAATGGTGAAGGTTCTTTGTGTGTTACTTCCATAAAAAGACAAAAACTATACTTGGTGCGTACATTAATTAAAAAATCATCAAGCTCATTTTCTGAAATTGAGTTAAAATCATGTGAGCTGTTGACGGCAGCATATCATCTAAAACTATCCAAGTGAATAATTTGGCAATGCATCTCTCTTGTCTTGTCTATGAACTAACTAAGATGATACATCTTTTGTTGAAGTTCGCAGTGCCAATATCACTTGTGAGACCTGAGTAATCACTCCAGTATATTTTTGTAATCTCATATGTGATGTTTTATTTTAACTTGTCAGGCTGGCCTAGCTCTTGGTGAGCTGAAGTCTGTTAAAGATCTATACGATCTGAAGACCTTGTCCGTGCTCTTCCTCATTGGTTTTATCTCGATATTACCTACCATCTTGAAGAGGAAGAAAATATACGAATAAAGCTCCCCCCAGAAGGCCAATTCGGATCCTCTTGGAAAGTAACTTATAGAAGATATAGTTTAATTTTATTGTCGGAGCAAATTGGAGAGGCAGAGGCAAGACATAGCAAGATAGATCTAATTTGAAATCTACATTTGACTGTCCAATCCACTGGTAGAATAGTGGAAAACGTTGTGTTCTTTACCAACTCCTTATGTTTTACCCTCTGTTAGTCTGTTTCTGACCCGAACTTACCTGTAGTATTGTTTAAGGTAATGTCAAATGTAGCAGACAGATTTTGATATGAATTCTGATTCAAGATTGATCTTATAGTC</genome_strand>
        <mrna_strand>CATTCCAGCCGCATATATTACAGTCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGCCTAGCTCTTGGTGAGCTGAAGTCTGTTAAAGATCTATACGATCTGAAGACCTTGTCCGTGCTCTTCCTCATTGGTTTTATCTCGATATTACCTACCATCTTGAAGAGGAAGAAAATATACGAATAAAGCTCCCCCCAGAAGGCCAATTCGGATCCTCTTGGAAAGTAACTTATAGAAGATATAGTTTAATTTTATTGTCGGAGCAAATTGGAGAGGCAGAGGCAAGACATAGCAAGATAGATCTAATTTGAAATCTACATTTGACTGTCCAATCCACTGGTAGAATAGTGGAAAACGTTGTGTTCTTTACCAACTCCTTATGTTTTACCCTCTGTTAGTCTGTTTCTGACCCGAACTTACCTGTAGTATTGTTTAAGGTAATGTCAAATGTAGCAGACAGATTTTGATATGAATTCTGATTCAAGATTGATCTTATAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284657" ref_strand="+" ref_description="SGN-E284657 [cLES-3-G17]">
      <seq>ctggttgtggcctgaaaaattgagattcttccaggcagagatagccaagcgtcgggataagttgctcaactatatgttgtttctgagaataactccaacattgccaaatcttttcatcaacttggcatctccaatagtggatataccattccatattttcttctcggccacattggttggtctcattccagccgcatatattacagtcaaggctggcctagctcttggtgagctgaagtctgttaaagatctatacgatctgaagaccttgtccgtgctcttcctcattggttttatctcgatattacctaccatcttgaagaggaagaaaatatacgaataaagctccccccagaaggccaattcggatcctcttggaaagtaacttatagaagatatagtttaattttattgtcggagcaaattggagaggcagaggcaagacatagcaagatagatctaatttgaaatctacatttgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24100" stop="22127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23800" g_stop="23761" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23760" i_stop="23656" i_length="105">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23655" g_stop="23485" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="211" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23484" i_stop="22699" i_length="786">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22698" g_stop="22427" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="483" r_length="272" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E284657" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23800" e_stop="23761"/>
          <exon e_start="23655" e_stop="23485"/>
          <exon e_start="22698" e_stop="22427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTTGTGGCCTGAAAAATTGAGATTCTTCCAGGCAGAGGTTTGTGATGTTCTGAAACTGTTTACTGTTAATGTGCTGCTGATCTTCTAATGTCATGCTTCCTTCATTTTCTGGCACATAGTAATGTGTAACATGTGGTTTCAGATAGCCAAGCGTCGGGATAAGTTGCTCAACTATATGTTGTTTCTGAGAATAACTCCAACATTGCCAAATCTTTTCATCAACTTGGCATCTCCAATAGTGGATATACCATTCCATATTTTCTTCTCGGCCACATTGGTTGGTCTCATTCCAGCCGCATATATTACAGTCAAGGTAAACTTTCTTCAGCTGGTGGTGGTTTTCCCCGTCATGCTTGTCCGTATTTGATGTCTTTCAACTGTATTACTCAATTTTGCTCTGAAATGATTGGTATAATGCATCTAGAGGACATGCTTTCTTAAAAAAGTAATTATCTTCCTTTGTGTGGTGACTCTCTTACAACAACATACCCTGTGAAATCTCACAGTTGGGTGTGGGAGGTTTGAGTCGGGAGTGTATGCAGCCCCTACTCGTGGAGGTAAAGAGGCTATTTCCCAACTCTCTAACCATCCAAATACTCTTTTAAAAAACGCAAGAAGCTGACGGCGTATTCTCTTTATAAATGGGTAAATCAGTTCCAGGATGTCATGCTTGGCACTAGTATAGATGTTGCAATAAATGGTAGAAGTACACCAACACAATCTAACTTTGGTAGCATTTAGAGTTAGCCTCTTCAGGTGATGTGGAGTCCCATAATGTGATAGTAATGGTGAAGGTTCTTTGTGTGTTACTTCCATAAAAAGACAAAAACTATACTTGGTGCGTACATTAATTAAAAAATCATCAAGCTCATTTTCTGAAATTGAGTTAAAATCATGTGAGCTGTTGACGGCAGCATATCATCTAAAACTATCCAAGTGAATAATTTGGCAATGCATCTCTCTTGTCTTGTCTATGAACTAACTAAGATGATACATCTTTTGTTGAAGTTCGCAGTGCCAATATCACTTGTGAGACCTGAGTAATCACTCCAGTATATTTTTGTAATCTCATATGTGATGTTTTATTTTAACTTGTCAGGCTGGCCTAGCTCTTGGTGAGCTGAAGTCTGTTAAAGATCTATACGATCTGAAGACCTTGTCCGTGCTCTTCCTCATTGGTTTTATCTCGATATTACCTACCATCTTGAAGAGGAAGAAAATATACGAATAAAGCTCCCCCCAGAAGGCCAATTCGGATCCTCTTGGAAAGTAACTTATAGAAGATATAGTTTAATTTTATTGTCGGAGCAAATTGGAGAGGCAGAGGCAAGACATAGCAAGATAGATCTAATTTGAAATCTACATTTGACT</genome_strand>
        <mrna_strand>CTGGTTGTGGCCTGAAAAATTGAGATTCTTCCAGGCAGAG.........................................................................................................ATAGCCAAGCGTCGGGATAAGTTGCTCAACTATATGTTGTTTCTGAGAATAACTCCAACATTGCCAAATCTTTTCATCAACTTGGCATCTCCAATAGTGGATATACCATTCCATATTTTCTTCTCGGCCACATTGGTTGGTCTCATTCCAGCCGCATATATTACAGTCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGCCTAGCTCTTGGTGAGCTGAAGTCTGTTAAAGATCTATACGATCTGAAGACCTTGTCCGTGCTCTTCCTCATTGGTTTTATCTCGATATTACCTACCATCTTGAAGAGGAAGAAAATATACGAATAAAGCTCCCCCCAGAAGGCCAATTCGGATCCTCTTGGAAAGTAACTTATAGAAGATATAGTTTAATTTTATTGTCGGAGCAAATTGGAGAGGCAGAGGCAAGACATAGCAAGATAGATCTAATTTGAAATCTACATTTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E440164" ref_strand="+" ref_description="SGN-E440164 [cSTA-15-B24]">
      <seq>ctgacaagggatgaggaaatgaacttaggtttgacgccgggagctgaggattcaccgactggtaaaaggtataaggaagggaagtttccgttgtcaagatgggagtttgcggcagctttaggtgtatttgtggtgtttacagtagggttgttttctatatacttgacaatgccagctgctgagtatggaaaactcaagttgcctcgttccctttccgacctccggatgctcaaggataatattggaacatatgccaaagtgtatcctgcgaaattcattctgggttactgctcaacatacatattcatgcagacatttatgattcctgggacaatattcatgtccctgcttgctggagcactttttggtgtttttaaagggcttatcttggttgtctttaatgctacagctggtgcatcatcctgcttttttctgtctaaattaattggcaagcctttagttagctggttgtggcctgaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="27816" stop="23481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27516" g_stop="27284" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27283" i_stop="24032" i_length="3252">
            <donor d_prob="0.966" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24031" g_stop="23781" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="484" r_length="251" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E440164" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E440164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27516" e_stop="27284"/>
          <exon e_start="24031" e_stop="23781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGACAAGGGATGAGGAAATGAACTTAGGTTTGACGCCGGGAGCTGAGGATTCACCGACTGGTAAAAGGTATAAGGAAGGGAAGTTCCCGTTGTCAAGATGGGAATTTGCGGCAGCTTTGGGTGTATTTGTGGTGTTTTCAGTAGGGTTATTTTCTATATACTTGACAATGCCAGCTGCTGAATATGGAAAACTCAAGTTGCCTCGTTCCCTTTCCGACCTCCGGATACTCAAGTAGGCAATTGTTTTGCTTTTGTGTTTCATTTCCTGCTTTTGATTGGTATAGTTTATGTGACATTGAACTGTAGCATCAATCTGCTTTTGTTAAGTTTAGCTGTATCGTGGTTGCTTGTGCATTTCGTGCGGGGTGTCAAATTTAGAGAGACCTAAGCAGCTTGTGGAGTTATGTTGCTAGTCATTGCTGTGTTTAAGCTCCTGTTGCTTGCCACGTATCAAGTGATACTTGGGGCTTAACCCTACTAAGTGTTTGAGGTGCCTGTGTTGTGTGATTGTAATCTTGCAGTTGTGTTTTTCTGCTGCCCCAGCTGTATATGTGGTCAATCATGTACCTTTTCTGTGAAAACTATTTGGTTGAGGTATAAAACAAAGCTTTTATTACTTTTAGTTTATGGTTGCAACTATTATATATACACTTTTTTGAGAACACTCAGCTTGTGCAGTGAGTGGTTGGGTGAGCTCCATATAGACTGACTGCACTCCAAATTTCTGCATTTGGGGAATTTTCTGATACAATTAGTTTTGATCTGCATGTAGGAGAAATCATTTGTGTATGTCCTTTTTAAAGCAGCTTTCCTCCTAAATGCTTCATTGTGTGTGTGCATTAGTTAGGACGCGGAGGGGTGTGACTTTCTCATCAATGTACTGTTGTCAGCTTAGTTTCAGAAGTTGGGGCCTTAAATTTGATAGTGAAAAAAGGAAACTGTACAAGTTAAACCTTTAACTTCTTTTTTCTGGTATGAAAGAAGAAACTTCTCGTCTTCTCCAGTCTAGATTTCTCTTCTATTTGAGTATTTATCTGTGTGCCAGAAGAAATTTAGGTGTGATAATTGCAGACTGTTTTTGTCTTTTAGTACGTTTTTCTACTATATCCTTTTAGTTTAATCTCCTTAAGACTTACGGTTTCCTTAGATCAATTAATGAGTAGGTGCTCAGATGGAACACAGGGCCTGGAAAGACTTGGGTGCTTGGTATCACTTTTTATCTAGGCTTAAGTCATCGATAGCCCCTTAAAGTTGTCCGCATAATTCACTTAATTTATCAAAATTGCAGACCTGCTGCCGCCAATTATTCATAACAATAAAATCTACCACCTTACATTTTTTTTAATAGATTTGCTTCTTCTAAACTTATGCTTAATTTAATAAGAAATGTAGTCAACTGCCCTCATTTCCTTTGTTAGAAAAAATGAAGAACATAATCTAAGTTTTTTAGCCTGAAAAAATGGAGATCACCATTCATTTTTTTTGCCGGAAAATATGGAGGCCTCACACACTGCCTCCGGTTCACACCCCTTCTTTCTTGATTACGAAACAAGAACAGAAAGTAAATTTGAAATCAAAACAAAAAGACAATGAACAGATTCTTTTTTATAAGAAAAACAAATACTATCAATTTTGAAATAGGAACAAAAAAGAAAACATAAAGAGAAAAAAGAAGAAGATAAATTCATACTTAGTATATGTCAAAATCACCATTTAGAAAATAACAGTGTTGGACAAGAGGTGATTTTAGTGAGAGAAGAAAAGGAAAGGTTTGAGGTGGTGTCGGGTGCAGGTGGGTGTGACGGTGGTAACATGAATTTTTCTTTTTCTTTTTTAAGTTAAAATTCTTTTCTTTTCATTCATTTATACAATTATTTTAAATTTAACTGCACATGTCTTCATTTTATTTGCTATTTTGCCACATCAGCTGCATGTGTATTACACGCACTTCCTCTTTTCACCAGGTCTTAGAAAAATGTTTGATAGGTACTTATTTTTTAAGGTTTGAGTGTCTAATAGAAAAATGGGCATGTTAAGGTGTTTAAGTGAATTTTGCGGACAACTTTAAGGGGCTCTGCTAAGCCTTTCATCTAATTCCAAATACATGAAGTAGCTGGAAGACGGTAGGTAGAGCAATAGTGTGAAGGAAGCTCTGTCAAACTGATAAATGGGTTATATCACTTGGTACCAATTTCCAGATATTTAAGCACAAAAGTACTATTAGCAGTAGAATGCCTATCTCACCAAAGTAATACATATGCAACCATTTGATTGAGCCTATACTGTGATCTGTGAGTTAAGAACATAATAAGCTGATACACATTATGATGAGAAAAAAAGTACAATCTCTTCAGAATGGGTGACGCATGAGTGCGGCCTACCAGTCAATGAAGTGAGTGAAAACCATGGGAGTCTTGGGTTAGAATTTCAACAGAGATGGCGATTTCTTCTCATCTTAAGCATTGTCGGTAGACTTACCCAGTGGAATAGTAGAGATGTGCGGAATCTAGCTTGGATACCTCAGTTATAAAGAAAAAGTGTATTTCTATTGTGTACCGGTTGTTGAGATAAATTTTGCAAGATTGTGCAGTACAATGCTCCAATGTCTAGTAAAAGCATCAGGATCCTGTAACATTTCTGTATAATAACAAACCAGTTTGAGTTAACAGGAATGACTCAACGGCATATTTTCTGTAAAATGGAGTGAAAAGCCTTACAGAAGTCTTGTATTCTCTTTTCTTTCACCAAAAATTTGTTCTTTGAATGTGAAAATCTGATGCAATCAACAATATACCTAGTGTAGTCCCACAACAATACATCTCTTAAAACACGATTAAAGCTTGAAAATCAGGAACGATGTGGAATTTGTTAAGTATGAGGCACGAGTGGGTTGATCATGAATTCATGACCAATTGGTCAATGGGGACAATTGCAATTTGAGGAGGAGAAAGTGAGGTGAGGGGAGGAAAATCTATTTTTCTGTTGATGACATTGACAGTACCAGCTCATTAATTAGTAATGCTTTCTGCTGTTGTTGGTTTACATAAATAAAATAAAAGAGGCATAGTTTTCCTTTTGAAGGATTGGATTTGTCAGAAATTGATTTGGAGGAAGATAAATATCAGGTCACTTTTATACTCAAAAATTTCTAAGGAAATGAAAGAGGAAGTTCAATTATGACAAGAGAGAGTTGGTTGCTCGATACTCCTCAAACCTAATGGGGTACGAAGCTCGAAGAACAAGGTTCACTTTCAATCGTTTAGATTGAAAACCACTAGCAGTCTTCTTACCATTGTTCAGCATCATGAATTTCTGGTTGTAATGTTGCTTCTTAATTAAAATCTTTTCATGCAAAGGTTCTGTGACCAAATGTTATTTGTAGATATTTTTTGGCATGATGTTTTAATATAATATTTGACCACTTTTTTCTAGTTATTATCTAGTATGGTACTGTTATAACTTATTATCTTGGTTGTTCCTTCAGGGATAATATTGGAACATATGCCAAAGTTTATCCTGCGAAGTTCATTCTGGGTTACTGCTCAACATATATATTCATGCAGACATTTATGATTCCTGGGACAATATTCATGTCCCTACTTGCAGGAGCACTTTTTGGTGTTCTTAAAGGGCTTATCTTGGTTGTCTTTAATGCTACAGCTGGTGCATCATCCTGCTTTTTTCTGTCTAAATTAATTGGCAGACCTTTGGTTAGCTGGTTGTGGCCTGAAAAAT</genome_strand>
        <mrna_strand>CTGACAAGGGATGAGGAAATGAACTTAGGTTTGACGCCGGGAGCTGAGGATTCACCGACTGGTAAAAGGTATAAGGAAGGGAAGTTTCCGTTGTCAAGATGGGAGTTTGCGGCAGCTTTAGGTGTATTTGTGGTGTTTACAGTAGGGTTGTTTTCTATATACTTGACAATGCCAGCTGCTGAGTATGGAAAACTCAAGTTGCCTCGTTCCCTTTCCGACCTCCGGATGCTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATAATATTGGAACATATGCCAAAGTGTATCCTGCGAAATTCATTCTGGGTTACTGCTCAACATACATATTCATGCAGACATTTATGATTCCTGGGACAATATTCATGTCCCTGCTTGCTGGAGCACTTTTTGGTGTTTTTAAAGGGCTTATCTTGGTTGTCTTTAATGCTACAGCTGGTGCATCATCCTGCTTTTTTCTGTCTAAATTAATTGGCAAGCCTTTAGTTAGCTGGTTGTGGCCTGAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E398649" ref_strand="+" ref_description="SGN-E398649 [TUS-44-F13]">
      <seq>tttgtttcttggatttttttttggtggggtttgattgaattttgttatataaattcaaatgaatgaagaatagggtgtcacgttcatcatcgtcaccagcatcgttgttgttgtcaatggctgcgccaaggagtttggtagtggatacggggcggttgctgacaagggatgaggaaatgaacttaggtttgacgccgggagctgaggattcaccgactggtaaaaggtataaggaagggaagttcccgttgtcaagatgggaatttgcggcagctttgggtgtatttgtggtgttttcagtagggttattttctatatacttgacaatgccagctgctgaatatggaaaactcaagttgcctcgttccctttccgacctccggatactcaaggataatattggaacatatgccaaagtttatcctgcgaagttcattctgggttactgctcaacatatatattcatgcagacatttatgattcctgggacaatattcatgtccctacttgcaggagcactttttggtgttcttaaagggcttatcttggttgtctttaatgctacagctggtgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="27973" stop="23548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27673" g_stop="27284" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27283" i_stop="24032" i_length="3252">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24031" g_stop="23848" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="575" r_length="184" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E398649" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27673" e_stop="27284"/>
          <exon e_start="24031" e_stop="23848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTTCTTGGA-TTTTTTTTGGTGGGGTTTGATTGAATTTTGTTATATAAATTCAAATGAATGAAGAATAGGGTGTCACGTTCATCATCGTCACCAGCATCGTTGTTGTTGTCAATGGCTGCGCCAAGGAGTTTGGTAGTGGATACGGGGCGGTTGCTGACAAGGGATGAGGAAATGAACTTAGGTTTGACGCCGGGAGCTGAGGATTCACCGACTGGTAAAAGGTATAAGGAAGGGAAGTTCCCGTTGTCAAGATGGGAATTTGCGGCAGCTTTGGGTGTATTTGTGGTGTTTTCAGTAGGGTTATTTTCTATATACTTGACAATGCCAGCTGCTGAATATGGAAAACTCAAGTTGCCTCGTTCCCTTTCCGACCTCCGGATACTCAAGTAGGCAATTGTTTTGCTTTTGTGTTTCATTTCCTGCTTTTGATTGGTATAGTTTATGTGACATTGAACTGTAGCATCAATCTGCTTTTGTTAAGTTTAGCTGTATCGTGGTTGCTTGTGCATTTCGTGCGGGGTGTCAAATTTAGAGAGACCTAAGCAGCTTGTGGAGTTATGTTGCTAGTCATTGCTGTGTTTAAGCTCCTGTTGCTTGCCACGTATCAAGTGATACTTGGGGCTTAACCCTACTAAGTGTTTGAGGTGCCTGTGTTGTGTGATTGTAATCTTGCAGTTGTGTTTTTCTGCTGCCCCAGCTGTATATGTGGTCAATCATGTACCTTTTCTGTGAAAACTATTTGGTTGAGGTATAAAACAAAGCTTTTATTACTTTTAGTTTATGGTTGCAACTATTATATATACACTTTTTTGAGAACACTCAGCTTGTGCAGTGAGTGGTTGGGTGAGCTCCATATAGACTGACTGCACTCCAAATTTCTGCATTTGGGGAATTTTCTGATACAATTAGTTTTGATCTGCATGTAGGAGAAATCATTTGTGTATGTCCTTTTTAAAGCAGCTTTCCTCCTAAATGCTTCATTGTGTGTGTGCATTAGTTAGGACGCGGAGGGGTGTGACTTTCTCATCAATGTACTGTTGTCAGCTTAGTTTCAGAAGTTGGGGCCTTAAATTTGATAGTGAAAAAAGGAAACTGTACAAGTTAAACCTTTAACTTCTTTTTTCTGGTATGAAAGAAGAAACTTCTCGTCTTCTCCAGTCTAGATTTCTCTTCTATTTGAGTATTTATCTGTGTGCCAGAAGAAATTTAGGTGTGATAATTGCAGACTGTTTTTGTCTTTTAGTACGTTTTTCTACTATATCCTTTTAGTTTAATCTCCTTAAGACTTACGGTTTCCTTAGATCAATTAATGAGTAGGTGCTCAGATGGAACACAGGGCCTGGAAAGACTTGGGTGCTTGGTATCACTTTTTATCTAGGCTTAAGTCATCGATAGCCCCTTAAAGTTGTCCGCATAATTCACTTAATTTATCAAAATTGCAGACCTGCTGCCGCCAATTATTCATAACAATAAAATCTACCACCTTACATTTTTTTTAATAGATTTGCTTCTTCTAAACTTATGCTTAATTTAATAAGAAATGTAGTCAACTGCCCTCATTTCCTTTGTTAGAAAAAATGAAGAACATAATCTAAGTTTTTTAGCCTGAAAAAATGGAGATCACCATTCATTTTTTTTGCCGGAAAATATGGAGGCCTCACACACTGCCTCCGGTTCACACCCCTTCTTTCTTGATTACGAAACAAGAACAGAAAGTAAATTTGAAATCAAAACAAAAAGACAATGAACAGATTCTTTTTTATAAGAAAAACAAATACTATCAATTTTGAAATAGGAACAAAAAAGAAAACATAAAGAGAAAAAAGAAGAAGATAAATTCATACTTAGTATATGTCAAAATCACCATTTAGAAAATAACAGTGTTGGACAAGAGGTGATTTTAGTGAGAGAAGAAAAGGAAAGGTTTGAGGTGGTGTCGGGTGCAGGTGGGTGTGACGGTGGTAACATGAATTTTTCTTTTTCTTTTTTAAGTTAAAATTCTTTTCTTTTCATTCATTTATACAATTATTTTAAATTTAACTGCACATGTCTTCATTTTATTTGCTATTTTGCCACATCAGCTGCATGTGTATTACACGCACTTCCTCTTTTCACCAGGTCTTAGAAAAATGTTTGATAGGTACTTATTTTTTAAGGTTTGAGTGTCTAATAGAAAAATGGGCATGTTAAGGTGTTTAAGTGAATTTTGCGGACAACTTTAAGGGGCTCTGCTAAGCCTTTCATCTAATTCCAAATACATGAAGTAGCTGGAAGACGGTAGGTAGAGCAATAGTGTGAAGGAAGCTCTGTCAAACTGATAAATGGGTTATATCACTTGGTACCAATTTCCAGATATTTAAGCACAAAAGTACTATTAGCAGTAGAATGCCTATCTCACCAAAGTAATACATATGCAACCATTTGATTGAGCCTATACTGTGATCTGTGAGTTAAGAACATAATAAGCTGATACACATTATGATGAGAAAAAAAGTACAATCTCTTCAGAATGGGTGACGCATGAGTGCGGCCTACCAGTCAATGAAGTGAGTGAAAACCATGGGAGTCTTGGGTTAGAATTTCAACAGAGATGGCGATTTCTTCTCATCTTAAGCATTGTCGGTAGACTTACCCAGTGGAATAGTAGAGATGTGCGGAATCTAGCTTGGATACCTCAGTTATAAAGAAAAAGTGTATTTCTATTGTGTACCGGTTGTTGAGATAAATTTTGCAAGATTGTGCAGTACAATGCTCCAATGTCTAGTAAAAGCATCAGGATCCTGTAACATTTCTGTATAATAACAAACCAGTTTGAGTTAACAGGAATGACTCAACGGCATATTTTCTGTAAAATGGAGTGAAAAGCCTTACAGAAGTCTTGTATTCTCTTTTCTTTCACCAAAAATTTGTTCTTTGAATGTGAAAATCTGATGCAATCAACAATATACCTAGTGTAGTCCCACAACAATACATCTCTTAAAACACGATTAAAGCTTGAAAATCAGGAACGATGTGGAATTTGTTAAGTATGAGGCACGAGTGGGTTGATCATGAATTCATGACCAATTGGTCAATGGGGACAATTGCAATTTGAGGAGGAGAAAGTGAGGTGAGGGGAGGAAAATCTATTTTTCTGTTGATGACATTGACAGTACCAGCTCATTAATTAGTAATGCTTTCTGCTGTTGTTGGTTTACATAAATAAAATAAAAGAGGCATAGTTTTCCTTTTGAAGGATTGGATTTGTCAGAAATTGATTTGGAGGAAGATAAATATCAGGTCACTTTTATACTCAAAAATTTCTAAGGAAATGAAAGAGGAAGTTCAATTATGACAAGAGAGAGTTGGTTGCTCGATACTCCTCAAACCTAATGGGGTACGAAGCTCGAAGAACAAGGTTCACTTTCAATCGTTTAGATTGAAAACCACTAGCAGTCTTCTTACCATTGTTCAGCATCATGAATTTCTGGTTGTAATGTTGCTTCTTAATTAAAATCTTTTCATGCAAAGGTTCTGTGACCAAATGTTATTTGTAGATATTTTTTGGCATGATGTTTTAATATAATATTTGACCACTTTTTTCTAGTTATTATCTAGTATGGTACTGTTATAACTTATTATCTTGGTTGTTCCTTCAGGGATAATATTGGAACATATGCCAAAGTTTATCCTGCGAAGTTCATTCTGGGTTACTGCTCAACATATATATTCATGCAGACATTTATGATTCCTGGGACAATATTCATGTCCCTACTTGCAGGAGCACTTTTTGGTGTTCTTAAAGGGCTTATCTTGGTTGTCTTTAATGCTACAGCTGGTGCA</genome_strand>
        <mrna_strand>TTTGTTTCTTGGATTTTTTTTTGGTGGGGTTTGATTGAATTTTGTTATATAAATTCAAATGAATGAAGAATAGGGTGTCACGTTCATCATCGTCACCAGCATCGTTGTTGTTGTCAATGGCTGCGCCAAGGAGTTTGGTAGTGGATACGGGGCGGTTGCTGACAAGGGATGAGGAAATGAACTTAGGTTTGACGCCGGGAGCTGAGGATTCACCGACTGGTAAAAGGTATAAGGAAGGGAAGTTCCCGTTGTCAAGATGGGAATTTGCGGCAGCTTTGGGTGTATTTGTGGTGTTTTCAGTAGGGTTATTTTCTATATACTTGACAATGCCAGCTGCTGAATATGGAAAACTCAAGTTGCCTCGTTCCCTTTCCGACCTCCGGATACTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATAATATTGGAACATATGCCAAAGTTTATCCTGCGAAGTTCATTCTGGGTTACTGCTCAACATATATATTCATGCAGACATTTATGATTCCTGGGACAATATTCATGTCCCTACTTGCAGGAGCACTTTTTGGTGTTCTTAAAGGGCTTATCTTGGTTGTCTTTAATGCTACAGCTGGTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204794" ref_strand="+" ref_description="SGN-E204794 [cLEC-14-M7]">
      <seq>ttgtttcttggatttttttttggtggggtttgattgaattttgttatataaattcaaatgaatgaagaatagggtgtcacgttcatcatcgtcaccagcatcgttgttgttgtcaatggctgcgccaaggagtttggtagtggatacggggcggttgctgacaagggatgaggaaatgaacttaggtttgacgccgggagctgaggattcaccgactggtaaaaggtataaggaagggaagttcccgttgtcaagatgggaatttgcggcagctttgggtgtatttgtggtgttttcagtagggttattttctatatacttgacaatgccagctgctgaatatggaaaactcaagttgcctcgttccctttccgacctccggatactcaaggataatattggaacatatgccaaagtttatcctgcgaagttcattctgggttactgctcaacatatatattcatgcagacatttatgattcctgggacaatattcatgtccctacttgcaggagcactttttggtgttcttaaagggcttatctttggtgtctttaatgctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="27972" stop="23558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27672" g_stop="27284" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27283" i_stop="24032" i_length="3252">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24031" g_stop="23858" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="564" r_length="174" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E204794" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27672" e_stop="27284"/>
          <exon e_start="24031" e_stop="23858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTCTTGGA-TTTTTTTTGGTGGGGTTTGATTGAATTTTGTTATATAAATTCAAATGAATGAAGAATAGGGTGTCACGTTCATCATCGTCACCAGCATCGTTGTTGTTGTCAATGGCTGCGCCAAGGAGTTTGGTAGTGGATACGGGGCGGTTGCTGACAAGGGATGAGGAAATGAACTTAGGTTTGACGCCGGGAGCTGAGGATTCACCGACTGGTAAAAGGTATAAGGAAGGGAAGTTCCCGTTGTCAAGATGGGAATTTGCGGCAGCTTTGGGTGTATTTGTGGTGTTTTCAGTAGGGTTATTTTCTATATACTTGACAATGCCAGCTGCTGAATATGGAAAACTCAAGTTGCCTCGTTCCCTTTCCGACCTCCGGATACTCAAGTAGGCAATTGTTTTGCTTTTGTGTTTCATTTCCTGCTTTTGATTGGTATAGTTTATGTGACATTGAACTGTAGCATCAATCTGCTTTTGTTAAGTTTAGCTGTATCGTGGTTGCTTGTGCATTTCGTGCGGGGTGTCAAATTTAGAGAGACCTAAGCAGCTTGTGGAGTTATGTTGCTAGTCATTGCTGTGTTTAAGCTCCTGTTGCTTGCCACGTATCAAGTGATACTTGGGGCTTAACCCTACTAAGTGTTTGAGGTGCCTGTGTTGTGTGATTGTAATCTTGCAGTTGTGTTTTTCTGCTGCCCCAGCTGTATATGTGGTCAATCATGTACCTTTTCTGTGAAAACTATTTGGTTGAGGTATAAAACAAAGCTTTTATTACTTTTAGTTTATGGTTGCAACTATTATATATACACTTTTTTGAGAACACTCAGCTTGTGCAGTGAGTGGTTGGGTGAGCTCCATATAGACTGACTGCACTCCAAATTTCTGCATTTGGGGAATTTTCTGATACAATTAGTTTTGATCTGCATGTAGGAGAAATCATTTGTGTATGTCCTTTTTAAAGCAGCTTTCCTCCTAAATGCTTCATTGTGTGTGTGCATTAGTTAGGACGCGGAGGGGTGTGACTTTCTCATCAATGTACTGTTGTCAGCTTAGTTTCAGAAGTTGGGGCCTTAAATTTGATAGTGAAAAAAGGAAACTGTACAAGTTAAACCTTTAACTTCTTTTTTCTGGTATGAAAGAAGAAACTTCTCGTCTTCTCCAGTCTAGATTTCTCTTCTATTTGAGTATTTATCTGTGTGCCAGAAGAAATTTAGGTGTGATAATTGCAGACTGTTTTTGTCTTTTAGTACGTTTTTCTACTATATCCTTTTAGTTTAATCTCCTTAAGACTTACGGTTTCCTTAGATCAATTAATGAGTAGGTGCTCAGATGGAACACAGGGCCTGGAAAGACTTGGGTGCTTGGTATCACTTTTTATCTAGGCTTAAGTCATCGATAGCCCCTTAAAGTTGTCCGCATAATTCACTTAATTTATCAAAATTGCAGACCTGCTGCCGCCAATTATTCATAACAATAAAATCTACCACCTTACATTTTTTTTAATAGATTTGCTTCTTCTAAACTTATGCTTAATTTAATAAGAAATGTAGTCAACTGCCCTCATTTCCTTTGTTAGAAAAAATGAAGAACATAATCTAAGTTTTTTAGCCTGAAAAAATGGAGATCACCATTCATTTTTTTTGCCGGAAAATATGGAGGCCTCACACACTGCCTCCGGTTCACACCCCTTCTTTCTTGATTACGAAACAAGAACAGAAAGTAAATTTGAAATCAAAACAAAAAGACAATGAACAGATTCTTTTTTATAAGAAAAACAAATACTATCAATTTTGAAATAGGAACAAAAAAGAAAACATAAAGAGAAAAAAGAAGAAGATAAATTCATACTTAGTATATGTCAAAATCACCATTTAGAAAATAACAGTGTTGGACAAGAGGTGATTTTAGTGAGAGAAGAAAAGGAAAGGTTTGAGGTGGTGTCGGGTGCAGGTGGGTGTGACGGTGGTAACATGAATTTTTCTTTTTCTTTTTTAAGTTAAAATTCTTTTCTTTTCATTCATTTATACAATTATTTTAAATTTAACTGCACATGTCTTCATTTTATTTGCTATTTTGCCACATCAGCTGCATGTGTATTACACGCACTTCCTCTTTTCACCAGGTCTTAGAAAAATGTTTGATAGGTACTTATTTTTTAAGGTTTGAGTGTCTAATAGAAAAATGGGCATGTTAAGGTGTTTAAGTGAATTTTGCGGACAACTTTAAGGGGCTCTGCTAAGCCTTTCATCTAATTCCAAATACATGAAGTAGCTGGAAGACGGTAGGTAGAGCAATAGTGTGAAGGAAGCTCTGTCAAACTGATAAATGGGTTATATCACTTGGTACCAATTTCCAGATATTTAAGCACAAAAGTACTATTAGCAGTAGAATGCCTATCTCACCAAAGTAATACATATGCAACCATTTGATTGAGCCTATACTGTGATCTGTGAGTTAAGAACATAATAAGCTGATACACATTATGATGAGAAAAAAAGTACAATCTCTTCAGAATGGGTGACGCATGAGTGCGGCCTACCAGTCAATGAAGTGAGTGAAAACCATGGGAGTCTTGGGTTAGAATTTCAACAGAGATGGCGATTTCTTCTCATCTTAAGCATTGTCGGTAGACTTACCCAGTGGAATAGTAGAGATGTGCGGAATCTAGCTTGGATACCTCAGTTATAAAGAAAAAGTGTATTTCTATTGTGTACCGGTTGTTGAGATAAATTTTGCAAGATTGTGCAGTACAATGCTCCAATGTCTAGTAAAAGCATCAGGATCCTGTAACATTTCTGTATAATAACAAACCAGTTTGAGTTAACAGGAATGACTCAACGGCATATTTTCTGTAAAATGGAGTGAAAAGCCTTACAGAAGTCTTGTATTCTCTTTTCTTTCACCAAAAATTTGTTCTTTGAATGTGAAAATCTGATGCAATCAACAATATACCTAGTGTAGTCCCACAACAATACATCTCTTAAAACACGATTAAAGCTTGAAAATCAGGAACGATGTGGAATTTGTTAAGTATGAGGCACGAGTGGGTTGATCATGAATTCATGACCAATTGGTCAATGGGGACAATTGCAATTTGAGGAGGAGAAAGTGAGGTGAGGGGAGGAAAATCTATTTTTCTGTTGATGACATTGACAGTACCAGCTCATTAATTAGTAATGCTTTCTGCTGTTGTTGGTTTACATAAATAAAATAAAAGAGGCATAGTTTTCCTTTTGAAGGATTGGATTTGTCAGAAATTGATTTGGAGGAAGATAAATATCAGGTCACTTTTATACTCAAAAATTTCTAAGGAAATGAAAGAGGAAGTTCAATTATGACAAGAGAGAGTTGGTTGCTCGATACTCCTCAAACCTAATGGGGTACGAAGCTCGAAGAACAAGGTTCACTTTCAATCGTTTAGATTGAAAACCACTAGCAGTCTTCTTACCATTGTTCAGCATCATGAATTTCTGGTTGTAATGTTGCTTCTTAATTAAAATCTTTTCATGCAAAGGTTCTGTGACCAAATGTTATTTGTAGATATTTTTTGGCATGATGTTTTAATATAATATTTGACCACTTTTTTCTAGTTATTATCTAGTATGGTACTGTTATAACTTATTATCTTGGTTGTTCCTTCAGGGATAATATTGGAACATATGCCAAAGTTTATCCTGCGAAGTTCATTCTGGGTTACTGCTCAACATATATATTCATGCAGACATTTATGATTCCTGGGACAATATTCATGTCCCTACTTGCAGGAGCACTTTTTGGTGTTCTTAAAGGGCTTATCTTGGTTGTCTTTAATGCTAC</genome_strand>
        <mrna_strand>TTGTTTCTTGGATTTTTTTTTGGTGGGGTTTGATTGAATTTTGTTATATAAATTCAAATGAATGAAGAATAGGGTGTCACGTTCATCATCGTCACCAGCATCGTTGTTGTTGTCAATGGCTGCGCCAAGGAGTTTGGTAGTGGATACGGGGCGGTTGCTGACAAGGGATGAGGAAATGAACTTAGGTTTGACGCCGGGAGCTGAGGATTCACCGACTGGTAAAAGGTATAAGGAAGGGAAGTTCCCGTTGTCAAGATGGGAATTTGCGGCAGCTTTGGGTGTATTTGTGGTGTTTTCAGTAGGGTTATTTTCTATATACTTGACAATGCCAGCTGCTGAATATGGAAAACTCAAGTTGCCTCGTTCCCTTTCCGACCTCCGGATACTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATAATATTGGAACATATGCCAAAGTTTATCCTGCGAAGTTCATTCTGGGTTACTGCTCAACATATATATTCATGCAGACATTTATGATTCCTGGGACAATATTCATGTCCCTACTTGCAGGAGCACTTTTTGGTGTTCTTAAAGGGCTTATCTTTGGTGTCTTTAATGCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270948" ref_strand="+" ref_description="SGN-E270948 [cLEM-6-P16]">
      <seq>ttgatttcttttatttcaaatatagattttttctgtattttttggtggattttctgcgatttgatttgatttgaatttctattgatttgggggtgattatttttggattttatttgtgggttttgattccggtgatagataattcaagattttgctttgggggtttgtttcttggattttttttggtggggtttgattgaattttgttatataaattcaaatgaatgaagaatagggtgtcacgttcatcatcgtcaccagcatcgttgttgttgtcaatggctgcgccaaggagtttggtagtggatacggggcggttgctgacaagggatgaggaaatgaacttangtttgacgccgggagctgaggattcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28136" stop="27162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27836" g_stop="27462" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E270948" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27836" e_stop="27462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTTCTTTGATTTCAAATATAGATTTTTTCTGTATTTTTTGGTGGATTTTCTGCGATTTGATTTGATTTGAATTTCTATTGATTTGGGGGTGATTATTTTTGGATTTTATTTGTGGGTTTTGATTCCGGTGATAGATAATTCAAGATTTTGCTTTGGGGGTTTGTTTCTTGGATTTTTTTTGGTGGGGTTTGATTGAATTTTGTTATATAAATTCAAATGAATGAAGAATAGGGTGTCACGTTCATCATCGTCACCAGCATCGTTGTTGTTGTCAATGGCTGCGCCAAGGAGTTTGGTAGTGGATACGGGGCGGTTGCTGACAAGGGATGAGGAAATGAACTTAGGTTTGACGCCGGGAGCTGAGGATTCAC</genome_strand>
        <mrna_strand>TTGATTTCTTTTATTTCAAATATAGATTTTTTCTGTATTTTTTGGTGGATTTTCTGCGATTTGATTTGATTTGAATTTCTATTGATTTGGGGGTGATTATTTTTGGATTTTATTTGTGGGTTTTGATTCCGGTGATAGATAATTCAAGATTTTGCTTTGGGGGTTTGTTTCTTGGATTTTTTTTGGTGGGGTTTGATTGAATTTTGTTATATAAATTCAAATGAATGAAGAATAGGGTGTCACGTTCATCATCGTCACCAGCATCGTTGTTGTTGTCAATGGCTGCGCCAAGGAGTTTGGTAGTGGATACGGGGCGGTTGCTGACAAGGGATGAGGAAATGAACTTANGTTTGACGCCGGGAGCTGAGGATTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270949" ref_strand="+" ref_description="SGN-E270949 [cLEM-6-P18]">
      <seq>gatttcttttatttcaaatatagattttttgtgtattttttggtggattttctgccatctaatttcatttgaatttctattgatttgggggtgattatttttggattttatttgtgggttttgattccggtgatagataattcaagattttgctttgggggtttgtttcttggattttttttggtggggtttgattgaattttgttatataaattcaaatgaatgaagaatagggtgtcacgttcatcatcgtcaccaacatcgttgttgttgtcaatggctgcgccaatgagtttggtaatggatacggggcggttgctgacaagggatgacgaaatgaacttatgtttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28134" stop="27183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27834" g_stop="27483" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E270949" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27834" e_stop="27483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTCTTTGATTTCAAATATAGATTTTTTCTGTATTTTTTGGTGGATTTTCTGCGATTTGATTTGATTTGAATTTCTATTGATTTGGGGGTGATTATTTTTGGATTTTATTTGTGGGTTTTGATTCCGGTGATAGATAATTCAAGATTTTGCTTTGGGGGTTTGTTTCTTGGATTTTTTTTGGTGGGGTTTGATTGAATTTTGTTATATAAATTCAAATGAATGAAGAATAGGGTGTCACGTTCATCATCGTCACCAGCATCGTTGTTGTTGTCAATGGCTGCGCCAAGGAGTTTGGTAGTGGATACGGGGCGGTTGCTGACAAGGGATGAGGAAATGAACTTAGGTTTGA</genome_strand>
        <mrna_strand>GATTTCTTTTATTTCAAATATAGATTTTTTGTGTATTTTTTGGTGGATTTTCTGCCATCTAATTTCATTTGAATTTCTATTGATTTGGGGGTGATTATTTTTGGATTTTATTTGTGGGTTTTGATTCCGGTGATAGATAATTCAAGATTTTGCTTTGGGGGTTTGTTTCTTGGATTTTTTTTGGTGGGGTTTGATTGAATTTTGTTATATAAATTCAAATGAATGAAGAATAGGGTGTCACGTTCATCATCGTCACCAACATCGTTGTTGTTGTCAATGGCTGCGCCAATGAGTTTGGTAATGGATACGGGGCGGTTGCTGACAAGGGATGACGAAATGAACTTATGTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395539" ref_strand="+" ref_description="SGN-E395539 [TUS-43-E14]">
      <seq>tttgtttcttggatttttttttggtggggtttgattgaattttgttatataaattcaaatgaatgaagaatagggtgtcacgttcatcatcgtcaccagcatcgttgttgttgtcaatggctgcgccaaggagtttggtagtggatacggggcgggatgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="27973" stop="27220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27673" g_stop="27513" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E395539" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>161</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27673" e_stop="27513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTTCTTGGA-TTTTTTTTGGTGGGGTTTGATTGAATTTTGTTATATAAATTCAAATGAATGAAGAATAGGGTGTCACGTTCATCATCGTCACCAGCATCGTTGTTGTTGTCAATGGCTGCGCCAAGGAGTTTGGTAGTGGATACGGGGC-GGTTGCTGA</genome_strand>
        <mrna_strand>TTTGTTTCTTGGATTTTTTTTTGGTGGGGTTTGATTGAATTTTGTTATATAAATTCAAATGAATGAAGAATAGGGTGTCACGTTCATCATCGTCACCAGCATCGTTGTTGTTGTCAATGGCTGCGCCAAGGAGTTTGGTAGTGGATACGGGGCGGGATGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250325" ref_strand="+" ref_description="SGN-E250325 [cLEG-6-H4]">
      <seq>taaaatcaatattgctttgcatttaaagccccaaaaaataaaaataaatgtcaagtgcctaatggaaatatttcaccttctcagttgaaatctcagctacctacagtctttttgctgctcattttttattttatttatttatattatattggttatcgaatttaatttcaacccttgaattttctgtatttttggtggatcttcttgttggggtttcattgattctgatctttatttttttttaaaataagaaattggttgatttctttgatttcaaatatagattttttctgtattttttggtggattttctgcgatttgatttgatttgaatttctattgatttgggggtgattatttttggattttatttgtgggttttgattccggtgatagataattcaagattttgctttgggggtttgtttcttggattttttttggtggggtttgattgaattttgttatataaattcaaatgaatgaagaatagggtgtcacgttcatcatcgtcaccagcatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28394" stop="27271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28094" g_stop="27571" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E250325" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28094" e_stop="27571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATCAATATTGCTTTGCATTTAAAGCCCCAAAAAATAAAAATAAATGTCAAGTTCCTAATTTAAATATTTCACCTTCTCAGTTGAAATCTCAGCTACCTACAGTCTTTTTGCTGCTCATTTTTTATTTTATTTATTTATATTATATTGGTTATCGAATTTAATTTCAACCCTTGAATTTTCTGTATTTTTGGTGGATCTTCTTGTTGGGGTTTCATTGATTCTGATCTTTATTTTTTTTTAAAATAAGAAATTGGTTGATTTCTTTGATTTCAAATATAGATTTTTTCTGTATTTTTTGGTGGATTTTCTGCGATTTGATTTGATTTGAATTTCTATTGATTTGGGGGTGATTATTTTTGGATTTTATTTGTGGGTTTTGATTCCGGTGATAGATAATTCAAGATTTTGCTTTGGGGGTTTGTTTCTTGGATTTTTTTTGGTGGGGTTTGATTGAATTTTGTTATATAAATTCAAATGAATGAAGAATAGGGTGTCACGTTCATCATCGTCACCAGCATCG</genome_strand>
        <mrna_strand>TAAAATCAATATTGCTTTGCATTTAAAGCCCCAAAAAATAAAAATAAATGTCAAGTGCCTAATGGAAATATTTCACCTTCTCAGTTGAAATCTCAGCTACCTACAGTCTTTTTGCTGCTCATTTTTTATTTTATTTATTTATATTATATTGGTTATCGAATTTAATTTCAACCCTTGAATTTTCTGTATTTTTGGTGGATCTTCTTGTTGGGGTTTCATTGATTCTGATCTTTATTTTTTTTTAAAATAAGAAATTGGTTGATTTCTTTGATTTCAAATATAGATTTTTTCTGTATTTTTTGGTGGATTTTCTGCGATTTGATTTGATTTGAATTTCTATTGATTTGGGGGTGATTATTTTTGGATTTTATTTGTGGGTTTTGATTCCGGTGATAGATAATTCAAGATTTTGCTTTGGGGGTTTGTTTCTTGGATTTTTTTTGGTGGGGTTTGATTGAATTTTGTTATATAAATTCAAATGAATGAAGAATAGGGTGTCACGTTCATCATCGTCACCAGCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250327" ref_strand="+" ref_description="SGN-E250327 [cLEG-6-H8]">
      <seq>taaaatcaatattgctttgcatttaaagccccaaaaaataaaaataaatgtcaagggcctaatggaaatatttcaccttctcagttgaaatctcagctacctacagtctttttgctgctcattttttattttatttatttatattatattgggtatcgaatttaatttcaacccttgaattttctgtatttttggtggatcttcttgttggggtttcattgattctgatctttatttttttttaaaataagaaattggttgatttctttgatttcaaatatagattttttctgtattttttggtggattctctgcgatttgatttgatttgaatttctattgatttgggggtgattatttttggattttatttgtgggttttgattccggcgatagataattcaagattttgctttgggggtttgtttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28394" stop="27364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28094" g_stop="27664" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E250327" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28094" e_stop="27664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATCAATATTGCTTTGCATTTAAAGCCCCAAAAAATAAAAATAAATGTCAAGTTCCTAATTTAAATATTTCACCTTCTCAGTTGAAATCTCAGCTACCTACAGTCTTTTTGCTGCTCATTTTTTATTTTATTTATTTATATTATATTGGTTATCGAATTTAATTTCAACCCTTGAATTTTCTGTATTTTTGGTGGATCTTCTTGTTGGGGTTTCATTGATTCTGATCTTTATTTTTTTTTAAAATAAGAAATTGGTTGATTTCTTTGATTTCAAATATAGATTTTTTCTGTATTTTTTGGTGGATTTTCTGCGATTTGATTTGATTTGAATTTCTATTGATTTGGGGGTGATTATTTTTGGATTTTATTTGTGGGTTTTGATTCCGGTGATAGATAATTCAAGATTTTGCTTTGGGGGTTTGTTTCTT</genome_strand>
        <mrna_strand>TAAAATCAATATTGCTTTGCATTTAAAGCCCCAAAAAATAAAAATAAATGTCAAGGGCCTAATGGAAATATTTCACCTTCTCAGTTGAAATCTCAGCTACCTACAGTCTTTTTGCTGCTCATTTTTTATTTTATTTATTTATATTATATTGGGTATCGAATTTAATTTCAACCCTTGAATTTTCTGTATTTTTGGTGGATCTTCTTGTTGGGGTTTCATTGATTCTGATCTTTATTTTTTTTTAAAATAAGAAATTGGTTGATTTCTTTGATTTCAAATATAGATTTTTTCTGTATTTTTTGGTGGATTCTCTGCGATTTGATTTGATTTGAATTTCTATTGATTTGGGGGTGATTATTTTTGGATTTTATTTGTGGGTTTTGATTCCGGCGATAGATAATTCAAGATTTTGCTTTGGGGGTTTGTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E398124" ref_strand="+" ref_description="SGN-E398124 [TUS-14-C6](-)">
      <seq>ctcgagaattgggtcaaatcttcactagtggttccaaagaatcagcttcttactatcgtatctccgaaagagtattataagaggtttaggaagttcattgacacacatttcttaagtgttccagataattggtgctcccaaaattcttcaaatccttgtcaacttcttcgcacggtaagcagtataaccccacagtcagagtctgatgatggtgattctgatcaaccaaagtgcactggtgaaggggaacataaagatgcgtactctgatgcctaatggttcgcgtcccctgagttctgttcccttttaagtagttctcatccccggtgaagtcattagtttgtgtacatagttgtttgtcgcccgagcatctagatatataccccctcttatttctgcgattatttttagcaaagttatgaggatggctttattctttaggttcatttctagcttacagtatataccaaagttcttgtgaagtcttatgatttattgtaaaaagccctttagtaagcttgagtattatttaagctgtaaagggaaaaaagatagcagttgaatctgctgatggttgaaatttttggctgtaacaatatattcctataaatccattgttgagtttttggtaaaaaaaaaaaaaaaaaaaaagggggggcccgtacccaatcgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31475" stop="7748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31175" g_stop="30548" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="628" r_length="628" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30547" i_stop="29282" i_length="1266">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29281" g_stop="29236" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="674" r_length="46" r_score="0.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E398124" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31175" e_stop="30548"/>
          <exon e_start="29281" e_stop="29236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGAGAATTGGGTCAAATCTTCACTAGTGGTTCCAAAGAATCAGCTTCCTACTATCGTATCTCCGAAAGAGTATTATAAGAGGTTTAGGAAGTTCATTGACACACATTTCTTAAGTGTTCCAGATAATTGGTGCTCCCAAAATTCTTCAAATCCTTGTCAACTTCTTCGCACGGTAAGCAGTATAACCCCACAGTCAGAGTCTGATGATGGTGATTCTGATCAACCAAAGTGCACTGGTGAAGGGGAACATAAAGATGCGTACTCTGATGCCTAATGGTTCGCGTCCCCTGAGTTCTGTTCCCTTTTAAGTAGTTCTCATCCCCGGTGAAGTCATTAGTTTGTGTACATAGTTGTTTGTCGCCCGAGCATCTAGATATATACCCCCTCTTATTTCTGCGATTATTTTTAGCAAAGTTATGAGGATGGCTTTATTCTTTAGGTTCATTTCTAGCTTACAGTATATACCAAAGTTCTTGTGAAGTCTTATGATTTATTGTAAAAAGCCCTTTAGTAAGCTTGAGTATTATTTAAGCTGTAAAGGGAAAAAAGATAGCAGTTGAATCTGCTGATGGTTGAAATTTTTGGCTGTAACAATATATTCCTATAAATCCATTGTTGAGTTTTTGGTTATTTGGTATATGTGACTCTTTTTTATGGCATAGTAGAATCACCAATGATCCACAACAACATACTTTATGTGTAGTTTCAAGAAGTGGAGTCAGAAGAAGGTAAAACAAAACGTACACATAGACAAGAAAAGAAATCGAAGCATGGTTGTAAGATAACATGACAACAAATAGCAAGATCATTACACACAGAGTGAAACTACAAAAAGTAAAACATGGGGCAAAGAAATATACCTGTTTTTTGTTGTGCTAGCTTTCATCCACAAAATGAACTAATGTAACAACCGTCAATTTCAGATTTTAGAATTCCTCCATCCTTAATCAGAAGAGACTGCTTTCCCATTCCCTTAGCGGGGGCGAGAATTCGAATTATTTAGGCCAATAACCAACTAATATTGAACAAAGAAAATACCATATCCTTCAAATCAGTCTCTTAGGGCTTCCAAGTTGTTTAATTTTAGTGTACAAATACAATTACAATGTGAAAAGAAGATGCATGTCATATTTTCAAAATTTCACGAGTCTCTCATTATTTGGATATCTTCAAGAATACCGTGAATGGATCACATTTAAAAACCATTTTGTCAAGTGTGTTTGTGTCGTGATATATATACACTTATTAATCATGTGTTTAAGAAATAATAGAATGATAAAGTTAATATTTATTTTTATAATAAATATACAATGTATCAATTTAAAAGTAGATAAATAATTAAGATGGGATGGAATAGTAGCGTATCAAACAACTATTGTTTTGTATATTTTCTCTTAAAAATGCCTTCACTTAATTATATCTGCAATAAATATGAAGCCTTTTGTTGGTATTTGTGAAATAAGTATAATTTTTAATATAAAAAAATATGAAGAAAATAATAATGAACTTTTTCTTGATTTGTTAAAATAATTAATAAAAATAAAGACTAAAATAAAATTTTGTTATAAAAATAATAAACAATTAAAAGAAATGGAATTGATTCTAATTTAATTATTTTTTTGTTAAAGACCATAGTGATGGGGTCGGTTTCAATTATTACATTAAAGTTTTGGATTGAAACTCAAAATTTTTGGTCTTTCTTTTTTTCTTTTTTTTTTCAGAAAAAGATGATTCTAAGAGAAAGAACATGGAGAACAAAATAAATTCAATACACTAAAAAAGATATTATACGCAATTTTATGCTACACTATAAAATTAATTTACTATGAAATTTGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>CTCGAGAATTGGGTCAAATCTTCACTAGTGGTTCCAAAGAATCAGCTTCTTACTATCGTATCTCCGAAAGAGTATTATAAGAGGTTTAGGAAGTTCATTGACACACATTTCTTAAGTGTTCCAGATAATTGGTGCTCCCAAAATTCTTCAAATCCTTGTCAACTTCTTCGCACGGTAAGCAGTATAACCCCACAGTCAGAGTCTGATGATGGTGATTCTGATCAACCAAAGTGCACTGGTGAAGGGGAACATAAAGATGCGTACTCTGATGCCTAATGGTTCGCGTCCCCTGAGTTCTGTTCCCTTTTAAGTAGTTCTCATCCCCGGTGAAGTCATTAGTTTGTGTACATAGTTGTTTGTCGCCCGAGCATCTAGATATATACCCCCTCTTATTTCTGCGATTATTTTTAGCAAAGTTATGAGGATGGCTTTATTCTTTAGGTTCATTTCTAGCTTACAGTATATACCAAAGTTCTTGTGAAGTCTTATGATTTATTGTAAAAAGCCCTTTAGTAAGCTTGAGTATTATTTAAGCTGTAAAGGGAAAAAAGATAGCAGTTGAATCTGCTGATGGTTGAAATTTTTGGCTGTAACAATATATTCCTATAAATCCATTGTTGAGTTTTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAAAAAAAAAAAAAAAAAGGGGGGGCCCGTACCCAATCGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733080" ref_strand="+" ref_description="SGN-E733080 [LB03DF11]">
      <seq>cgatttgtttgtggcatcattgactatctcagacaatatacatgggacaaacaactcgagaattgggtcaaatcttcactagtggttccaaagaatcagcttcctactatcgtatctccgaaagagtattataagaggtttaggaagttcattgacacacatttcttaagtgttccagataattggtgctcccaaaattcttcaaatccttgtcaacttcttcgcacggtaagcagtataaccccacagtcagagtctgatgatggtgattctgatcaaccaaagtgcactggtgaaggggaacataaagatgcgtactctgatgcctaatggttcgcgtcccctgagttctgttcccttttaagtagttctcatccccggtgaagtcattagtttgtgtacatagttgtttgtcgcccgagcatctagatatataccccctcttatttctgcgattatttttagcaaagttatgaggatggctttattctttaggttcatttctagcttacagtatataccaaagttcttgtgaagtcttatgatttattgtaaaaagccctttagtaagcttgagtattatttaagctgtaaagggaaaaaagatagcagttgaatctgctgatggttgaaatttttggctgtaacaatatattcctataaatccattgttgagtttttggttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31527" stop="30244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31229" g_stop="30533" g_length="697"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="697" r_length="697" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E733080" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31229" e_stop="30533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTTGTTTGTGGCATCATTGACTATCTCAGACAATATACATGGGACAAACAACTCGAGAATTGGGTCAAATCTTCACTAGTGGTTCCAAAGAATCAGCTTCCTACTATCGTATCTCCGAAAGAGTATTATAAGAGGTTTAGGAAGTTCATTGACACACATTTCTTAAGTGTTCCAGATAATTGGTGCTCCCAAAATTCTTCAAATCCTTGTCAACTTCTTCGCACGGTAAGCAGTATAACCCCACAGTCAGAGTCTGATGATGGTGATTCTGATCAACCAAAGTGCACTGGTGAAGGGGAACATAAAGATGCGTACTCTGATGCCTAATGGTTCGCGTCCCCTGAGTTCTGTTCCCTTTTAAGTAGTTCTCATCCCCGGTGAAGTCATTAGTTTGTGTACATAGTTGTTTGTCGCCCGAGCATCTAGATATATACCCCCTCTTATTTCTGCGATTATTTTTAGCAAAGTTATGAGGATGGCTTTATTCTTTAGGTTCATTTCTAGCTTACAGTATATACCAAAGTTCTTGTGAAGTCTTATGATTTATTGTAAAAAGCCCTTTAGTAAGCTTGAGTATTATTTAAGCTGTAAAGGGAAAAAAGATAGCAGTTGAATCTGCTGATGGTTGAAATTTTTGGCTGTAACAATATATTCCTATAAATCCATTGTTGAGTTTTTGGTTATTTGGTATATG</genome_strand>
        <mrna_strand>CGATTTGTTTGTGGCATCATTGACTATCTCAGACAATATACATGGGACAAACAACTCGAGAATTGGGTCAAATCTTCACTAGTGGTTCCAAAGAATCAGCTTCCTACTATCGTATCTCCGAAAGAGTATTATAAGAGGTTTAGGAAGTTCATTGACACACATTTCTTAAGTGTTCCAGATAATTGGTGCTCCCAAAATTCTTCAAATCCTTGTCAACTTCTTCGCACGGTAAGCAGTATAACCCCACAGTCAGAGTCTGATGATGGTGATTCTGATCAACCAAAGTGCACTGGTGAAGGGGAACATAAAGATGCGTACTCTGATGCCTAATGGTTCGCGTCCCCTGAGTTCTGTTCCCTTTTAAGTAGTTCTCATCCCCGGTGAAGTCATTAGTTTGTGTACATAGTTGTTTGTCGCCCGAGCATCTAGATATATACCCCCTCTTATTTCTGCGATTATTTTTAGCAAAGTTATGAGGATGGCTTTATTCTTTAGGTTCATTTCTAGCTTACAGTATATACCAAAGTTCTTGTGAAGTCTTATGATTTATTGTAAAAAGCCCTTTAGTAAGCTTGAGTATTATTTAAGCTGTAAAGGGAAAAAAGATAGCAGTTGAATCTGCTGATGGTTGAAATTTTTGGCTGTAACAATATATTCCTATAAATCCATTGTTGAGTTTTTGGTTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728777" ref_strand="+" ref_description="SGN-E728777 [LA18DF11]">
      <seq>acttgtttgtggcatcattgactanctcagacaatatacatgggacaaacaactcgagaattgggtcaaatcttcactagtggttccaaagaatcagcttcctactatcgtatctccgaaagagtattataagaggtttaggaagttcattgacacacatttcttaagtgttccagataattggtgctcccaaaattcttcaaatccttgtcaacttcttcgcacggtaagcagtataaccccacagtcagagtctgatgatggtgattctgatcaaccaaagtgcactggtgaaggggaacataaagatgcgtactctgatgcctaatggttcgcgtcccctgagttctgttcccttttaagtagttctcatccccggtgaagtcattagtttgtgtacatagttgtttgtcgcccgagcatctagatatataccccctcttatttctgcgattatttttagcaaagttatgaggatggctttattctttaggttcatttctagcttacagtatataccaaagttcttgtgaagtcttatgatttattgtaaaaagccctttagtaagcttgagtattatttaagctgtaaagggaaaaaagacagcagttgaatctgctgatggatgaaatttttggctgtaacaatatattcctataaatccattgttgagttgttggttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31527" stop="30244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31227" g_stop="30533" g_length="695"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="695" r_length="695" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E728777" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31227" e_stop="30533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGTTTGTGGCATCATTGACTATCTCAGACAATATACATGGGACAAACAACTCGAGAATTGGGTCAAATCTTCACTAGTGGTTCCAAAGAATCAGCTTCCTACTATCGTATCTCCGAAAGAGTATTATAAGAGGTTTAGGAAGTTCATTGACACACATTTCTTAAGTGTTCCAGATAATTGGTGCTCCCAAAATTCTTCAAATCCTTGTCAACTTCTTCGCACGGTAAGCAGTATAACCCCACAGTCAGAGTCTGATGATGGTGATTCTGATCAACCAAAGTGCACTGGTGAAGGGGAACATAAAGATGCGTACTCTGATGCCTAATGGTTCGCGTCCCCTGAGTTCTGTTCCCTTTTAAGTAGTTCTCATCCCCGGTGAAGTCATTAGTTTGTGTACATAGTTGTTTGTCGCCCGAGCATCTAGATATATACCCCCTCTTATTTCTGCGATTATTTTTAGCAAAGTTATGAGGATGGCTTTATTCTTTAGGTTCATTTCTAGCTTACAGTATATACCAAAGTTCTTGTGAAGTCTTATGATTTATTGTAAAAAGCCCTTTAGTAAGCTTGAGTATTATTTAAGCTGTAAAGGGAAAAAAGATAGCAGTTGAATCTGCTGATGGTTGAAATTTTTGGCTGTAACAATATATTCCTATAAATCCATTGTTGAGTTTTTGGTTATTTGGTATATG</genome_strand>
        <mrna_strand>ACTTGTTTGTGGCATCATTGACTANCTCAGACAATATACATGGGACAAACAACTCGAGAATTGGGTCAAATCTTCACTAGTGGTTCCAAAGAATCAGCTTCCTACTATCGTATCTCCGAAAGAGTATTATAAGAGGTTTAGGAAGTTCATTGACACACATTTCTTAAGTGTTCCAGATAATTGGTGCTCCCAAAATTCTTCAAATCCTTGTCAACTTCTTCGCACGGTAAGCAGTATAACCCCACAGTCAGAGTCTGATGATGGTGATTCTGATCAACCAAAGTGCACTGGTGAAGGGGAACATAAAGATGCGTACTCTGATGCCTAATGGTTCGCGTCCCCTGAGTTCTGTTCCCTTTTAAGTAGTTCTCATCCCCGGTGAAGTCATTAGTTTGTGTACATAGTTGTTTGTCGCCCGAGCATCTAGATATATACCCCCTCTTATTTCTGCGATTATTTTTAGCAAAGTTATGAGGATGGCTTTATTCTTTAGGTTCATTTCTAGCTTACAGTATATACCAAAGTTCTTGTGAAGTCTTATGATTTATTGTAAAAAGCCCTTTAGTAAGCTTGAGTATTATTTAAGCTGTAAAGGGAAAAAAGACAGCAGTTGAATCTGCTGATGGATGAAATTTTTGGCTGTAACAATATATTCCTATAAATCCATTGTTGAGTTGTTGGTTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728167" ref_strand="+" ref_description="SGN-E728167 [LA16DF11]">
      <seq>acctgtttgtggcatcattgactatctcagacaatatacatgggacaaacaactcgagaattgggtcaaatcttcactagtggttccaaagaatcagcttcctactatcgtatctccgaaagagtattataagaggtttaggaagttcattgacacacatttcttaagtgttccagataattggtgctcccaaaattcttcaaatccttgtcaacttcttcgcacggtaagcagtataaccccacagtcagagtctgatgatggtgattctgatcaaccaaagtgcactggtgaaggggaacataaagatgcgtactctgatgcctaatggttcgcgtcccctgagttctgttcccttttaagtagttctcatccccggtgaagtcattagtttgtgtacatagttgtttgtcgcccgagcatctagatatataccccctcttatttctgcgattatttttagcaaagttatgaggatggctttattctttaggttcatttctagcttacagtatataccaaagttcttgtgaagtcttatgatttattgtaaaaagccctttagtaagcttgagtattatttaagctgtaaagggaaaaaagatagcagttgaatctgctgatggttgaaatttttggctgtaacaatatattcctataaatccattgttgagtttttggttacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31527" stop="30244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31227" g_stop="30533" g_length="695"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="695" r_length="695" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E728167" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728167" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31227" e_stop="30533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGTTTGTGGCATCATTGACTATCTCAGACAATATACATGGGACAAACAACTCGAGAATTGGGTCAAATCTTCACTAGTGGTTCCAAAGAATCAGCTTCCTACTATCGTATCTCCGAAAGAGTATTATAAGAGGTTTAGGAAGTTCATTGACACACATTTCTTAAGTGTTCCAGATAATTGGTGCTCCCAAAATTCTTCAAATCCTTGTCAACTTCTTCGCACGGTAAGCAGTATAACCCCACAGTCAGAGTCTGATGATGGTGATTCTGATCAACCAAAGTGCACTGGTGAAGGGGAACATAAAGATGCGTACTCTGATGCCTAATGGTTCGCGTCCCCTGAGTTCTGTTCCCTTTTAAGTAGTTCTCATCCCCGGTGAAGTCATTAGTTTGTGTACATAGTTGTTTGTCGCCCGAGCATCTAGATATATACCCCCTCTTATTTCTGCGATTATTTTTAGCAAAGTTATGAGGATGGCTTTATTCTTTAGGTTCATTTCTAGCTTACAGTATATACCAAAGTTCTTGTGAAGTCTTATGATTTATTGTAAAAAGCCCTTTAGTAAGCTTGAGTATTATTTAAGCTGTAAAGGGAAAAAAGATAGCAGTTGAATCTGCTGATGGTTGAAATTTTTGGCTGTAACAATATATTCCTATAAATCCATTGTTGAGTTTTTGGTTATTTGGTATATG</genome_strand>
        <mrna_strand>ACCTGTTTGTGGCATCATTGACTATCTCAGACAATATACATGGGACAAACAACTCGAGAATTGGGTCAAATCTTCACTAGTGGTTCCAAAGAATCAGCTTCCTACTATCGTATCTCCGAAAGAGTATTATAAGAGGTTTAGGAAGTTCATTGACACACATTTCTTAAGTGTTCCAGATAATTGGTGCTCCCAAAATTCTTCAAATCCTTGTCAACTTCTTCGCACGGTAAGCAGTATAACCCCACAGTCAGAGTCTGATGATGGTGATTCTGATCAACCAAAGTGCACTGGTGAAGGGGAACATAAAGATGCGTACTCTGATGCCTAATGGTTCGCGTCCCCTGAGTTCTGTTCCCTTTTAAGTAGTTCTCATCCCCGGTGAAGTCATTAGTTTGTGTACATAGTTGTTTGTCGCCCGAGCATCTAGATATATACCCCCTCTTATTTCTGCGATTATTTTTAGCAAAGTTATGAGGATGGCTTTATTCTTTAGGTTCATTTCTAGCTTACAGTATATACCAAAGTTCTTGTGAAGTCTTATGATTTATTGTAAAAAGCCCTTTAGTAAGCTTGAGTATTATTTAAGCTGTAAAGGGAAAAAAGATAGCAGTTGAATCTGCTGATGGTTGAAATTTTTGGCTGTAACAATATATTCCTATAAATCCATTGTTGAGTTTTTGGTTACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E398270" ref_strand="+" ref_description="SGN-E398270 [TUS-14-C6]">
      <seq>ctcgagaattgggtcaaatcttcactagtggttccaaagaatcagcttcctactatcgtatctccgaaagagtattataagaggtttaggaagttcattgacacacatttcttaagtgttccagataattggtgctcccaaaattcttcaaatccttgtcaacttcttcgcacggtaagcagtataaccccacagtcagagtctgatgatggtgattctgatcaaccaaagtgcactggtgaaggggaacataaagatgcgtactctgatgcctaatggttcgcgtcccctgagttctgttcccttttaagtagttctcatccccggtgaagtcattagtttgtgtacatagttgtttgtcgcccgagcatctagatatataccccctcttatttctgcgattatttttagcaaagttatgaggatggctttattctttaggttcatttctagcttacagtatataccaaagttcttgtgaagtcttatgatttattgtaaaaagccctttagtaagcttgagtattatttaagctgtaaagggaaaaaagatagcagttgaatctgctgatggttgaaatttttggctgtaacaatatattcctataaatccattgttgagtttttggttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31475" stop="30244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31175" g_stop="30536" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="640" r_length="640" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E398270" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31175" e_stop="30536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGAGAATTGGGTCAAATCTTCACTAGTGGTTCCAAAGAATCAGCTTCCTACTATCGTATCTCCGAAAGAGTATTATAAGAGGTTTAGGAAGTTCATTGACACACATTTCTTAAGTGTTCCAGATAATTGGTGCTCCCAAAATTCTTCAAATCCTTGTCAACTTCTTCGCACGGTAAGCAGTATAACCCCACAGTCAGAGTCTGATGATGGTGATTCTGATCAACCAAAGTGCACTGGTGAAGGGGAACATAAAGATGCGTACTCTGATGCCTAATGGTTCGCGTCCCCTGAGTTCTGTTCCCTTTTAAGTAGTTCTCATCCCCGGTGAAGTCATTAGTTTGTGTACATAGTTGTTTGTCGCCCGAGCATCTAGATATATACCCCCTCTTATTTCTGCGATTATTTTTAGCAAAGTTATGAGGATGGCTTTATTCTTTAGGTTCATTTCTAGCTTACAGTATATACCAAAGTTCTTGTGAAGTCTTATGATTTATTGTAAAAAGCCCTTTAGTAAGCTTGAGTATTATTTAAGCTGTAAAGGGAAAAAAGATAGCAGTTGAATCTGCTGATGGTTGAAATTTTTGGCTGTAACAATATATTCCTATAAATCCATTGTTGAGTTTTTGGTTATTTGGTAT</genome_strand>
        <mrna_strand>CTCGAGAATTGGGTCAAATCTTCACTAGTGGTTCCAAAGAATCAGCTTCCTACTATCGTATCTCCGAAAGAGTATTATAAGAGGTTTAGGAAGTTCATTGACACACATTTCTTAAGTGTTCCAGATAATTGGTGCTCCCAAAATTCTTCAAATCCTTGTCAACTTCTTCGCACGGTAAGCAGTATAACCCCACAGTCAGAGTCTGATGATGGTGATTCTGATCAACCAAAGTGCACTGGTGAAGGGGAACATAAAGATGCGTACTCTGATGCCTAATGGTTCGCGTCCCCTGAGTTCTGTTCCCTTTTAAGTAGTTCTCATCCCCGGTGAAGTCATTAGTTTGTGTACATAGTTGTTTGTCGCCCGAGCATCTAGATATATACCCCCTCTTATTTCTGCGATTATTTTTAGCAAAGTTATGAGGATGGCTTTATTCTTTAGGTTCATTTCTAGCTTACAGTATATACCAAAGTTCTTGTGAAGTCTTATGATTTATTGTAAAAAGCCCTTTAGTAAGCTTGAGTATTATTTAAGCTGTAAAGGGAAAAAAGATAGCAGTTGAATCTGCTGATGGTTGAAATTTTTGGCTGTAACAATATATTCCTATAAATCCATTGTTGAGTTTTTGGTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202294" ref_strand="+" ref_description="SGN-E202294 [cLEC-6-E14]">
      <seq>tcgagaattgggtcaaatcttcactagtggttccaaagaatcagcttcctactatcgtatctccgaaagagtattataagaggtttaggaagttcattgacacacatttcttaagtgttccagataattggtgctcccaaaattcttcaaatccttgtcaacttcttcgcacggtaagcagtataaccccacagtcagagtctgatgatggtgattctgatcaaccaaagtgcactggtgaaggggaacataaagatgcgtactctgatgcctaatggttcgcgtcccctgagttctgttcccttttaagtagttctcatccccggtgaagtcattagtttgtgtacatagttgtttgtcgcccgagcatctagatatataccccctcttatttctgcgattatttttagcaaagttatgaggatggctttattctttaggttcatttctagcttacagtatataccaaagttcttgtgaagtcttatgatttattgtaaaaagccctttagtaagcttgagtattatttaagctgtaaagggaaaaaagatagcagttgaatctgctgatggttgaaatttttggctgtaacaatatattcctataaatccattgttgagtttttggttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31474" stop="30244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31174" g_stop="30537" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E202294" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31174" e_stop="30537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAGAATTGGGTCAAATCTTCACTAGTGGTTCCAAAGAATCAGCTTCCTACTATCGTATCTCCGAAAGAGTATTATAAGAGGTTTAGGAAGTTCATTGACACACATTTCTTAAGTGTTCCAGATAATTGGTGCTCCCAAAATTCTTCAAATCCTTGTCAACTTCTTCGCACGGTAAGCAGTATAACCCCACAGTCAGAGTCTGATGATGGTGATTCTGATCAACCAAAGTGCACTGGTGAAGGGGAACATAAAGATGCGTACTCTGATGCCTAATGGTTCGCGTCCCCTGAGTTCTGTTCCCTTTTAAGTAGTTCTCATCCCCGGTGAAGTCATTAGTTTGTGTACATAGTTGTTTGTCGCCCGAGCATCTAGATATATACCCCCTCTTATTTCTGCGATTATTTTTAGCAAAGTTATGAGGATGGCTTTATTCTTTAGGTTCATTTCTAGCTTACAGTATATACCAAAGTTCTTGTGAAGTCTTATGATTTATTGTAAAAAGCCCTTTAGTAAGCTTGAGTATTATTTAAGCTGTAAAGGGAAAAAAGATAGCAGTTGAATCTGCTGATGGTTGAAATTTTTGGCTGTAACAATATATTCCTATAAATCCATTGTTGAGTTTTTGGTTATTTGGTA</genome_strand>
        <mrna_strand>TCGAGAATTGGGTCAAATCTTCACTAGTGGTTCCAAAGAATCAGCTTCCTACTATCGTATCTCCGAAAGAGTATTATAAGAGGTTTAGGAAGTTCATTGACACACATTTCTTAAGTGTTCCAGATAATTGGTGCTCCCAAAATTCTTCAAATCCTTGTCAACTTCTTCGCACGGTAAGCAGTATAACCCCACAGTCAGAGTCTGATGATGGTGATTCTGATCAACCAAAGTGCACTGGTGAAGGGGAACATAAAGATGCGTACTCTGATGCCTAATGGTTCGCGTCCCCTGAGTTCTGTTCCCTTTTAAGTAGTTCTCATCCCCGGTGAAGTCATTAGTTTGTGTACATAGTTGTTTGTCGCCCGAGCATCTAGATATATACCCCCTCTTATTTCTGCGATTATTTTTAGCAAAGTTATGAGGATGGCTTTATTCTTTAGGTTCATTTCTAGCTTACAGTATATACCAAAGTTCTTGTGAAGTCTTATGATTTATTGTAAAAAGCCCTTTAGTAAGCTTGAGTATTATTTAAGCTGTAAAGGGAAAAAAGATAGCAGTTGAATCTGCTGATGGTTGAAATTTTTGGCTGTAACAATATATTCCTATAAATCCATTGTTGAGTTTTTGGTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E598086" ref_strand="+" ref_description="SGN-E598086 [73754]">
      <seq>gttgttctcgtccctggtgaagtcattagtttgtgtacatagttgtttatctcgccgagcatctagatatatacgccctcttatttctgcgattatttttagcaaagttatgaggatggctttattctttaggttcatttctagcttgcagtatataccaaagttcttgtgaaagtctatgatttattgtaaaaagccctttagtaagcttgagtattatttaggctgtaaagggaaaaaagatagcagttgaacctgctgattgttgaattttttggctgtaagacaatattcctataaatccattgttgagtttttggttaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31165" stop="30244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30865" g_stop="30540" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E598086" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E598086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30865" e_stop="30540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGTTCTCATCCCCGGTGAAGTCATTAGTTTGTGTACATAGTTGTTTGTCGC-CCGAGCATCTAGATATATACCCCCTCTTATTTCTGCGATTATTTTTAGCAAAGTTATGAGGATGGCTTTATTCTTTAGGTTCATTTCTAGCTTACAGTATATACCAAAGTTCTTGTG-AAGTCTTATGATTTATTGTAAAAAGCCCTTTAGTAAGCTTGAGTATTATTTAAGCTGTAAAGGGAAAAAAGATAGCAGTTGAATCTGCTGATGGTTGAAATTTTTGGCTGTAACAATATATTCCTATAAATCCATTGTTGAGTTTTTGGTTATTTG</genome_strand>
        <mrna_strand>GTTGTTCTCGTCCCTGGTGAAGTCATTAGTTTGTGTACATAGTTGTTTATCTCGCCGAGCATCTAGATATATACGCCCTCTTATTTCTGCGATTATTTTTAGCAAAGTTATGAGGATGGCTTTATTCTTTAGGTTCATTTCTAGCTTGCAGTATATACCAAAGTTCTTGTGAAAGTC-TATGATTTATTGTAAAAAGCCCTTTAGTAAGCTTGAGTATTATTTAGGCTGTAAAGGGAAAAAAGATAGCAGTTGAACCTGCTGATTGTTGAATTTTTTGGCTGTAAGACAATATTCCTATAAATCCATTGTTGAGTTTTTGGTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E221281" ref_strand="+" ref_description="SGN-E221281 [cLEL-22-H1](-)">
      <seq>tcatcaaggaaattaagagagcggaatttgactcgttcttaaagtttgctcctagttattttgcatacatggatcagtgccatgctaagaggaatcaaacgtgccttgcaaaaattcttggcatttatcaggtcaatgtaaggccaagaggtggaaaagagactaggcacgatctcatggtgatggagaacctttcatttggtagaattactactcggcagtatgatctgaaaggagctttgcatgctcgatttagtgcagctggcaatggtgcaggagacgttcttttagaccaaaactttgtgaatgacatgaatgtttctcctttatatgtcgggacaagatcaaagagggctttgcaacgggctgtatggaatgactgtactttcctcaagtcaatcaatgtgatggactattctctacttgtgggagtggatagccaacgccatgaacttgtttgtggcatcattgactatctcagacaatatacatgggacaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32351" stop="30877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32051" g_stop="31921" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31920" i_stop="31804" i_length="117">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31803" g_stop="31540" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="395" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31539" i_stop="31284" i_length="256">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31283" g_stop="31177" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="502" r_length="107" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E221281" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32051" e_stop="31921"/>
          <exon e_start="31803" e_stop="31540"/>
          <exon e_start="31283" e_stop="31177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCAAGGAAATTAAGAGAGCGGAATTTGACTCGTTCTTGAAGTTTGCTCCTAGTTATTTTGCATACATGGATCAGTGCCATGCTAAGAGGAATCAAACGTGCCTTGCAAAAATTCTTGGCATTTATCAGGTTGATTAATCGACTTTAGTCACTCCACTTTTCTGGCTGTTACCACAATATATTTTTTTTCCTGCCAGCACACTCTGGACATCTTTTTGAGTGTTCCAACTGTTTTATGTTTTTCAGGTCAATGTAAGGCCAAGAGGTGGAAAAGAGACTAGGCACGATCTCATGGTGATGGAGAACCTTTCATTTGGTAGAATTACTACTCGGCAGTATGATCTGAAAGGAGCTTTGCATGCTCGATTTAGTGCAGCTGGCAATGGTGCAGGAGACGTTCTTTTAGACCAAAACTTTGTGAATGACATGAATGTTTCTCCTTTATATGTCGGGACAAGATCAAAGAGGGCTTTGCAACGGGCTGTATGGAATGACTGTACTTTCCTCAAGGTAAGTCAGGGGTCAAACTGCTCTAACTCTAATTACCCGTAGCTCTATCCACCAAAACTTAAAAGCATCCAAAAAAAAAAGTCACTTCTGCTTATAATTATTACTCCCTCCCTTTCAATTTGGTCGTCTTATTTTCCTTTTTTAGTCGGTTTCAAAAAGAATGCAATTTTCCTTTTTTTGGCAATCTAATTGAAATGCATTATCTGAAGCTAATGGATTATCCTCTAAAACTGGTAGTATTTGTTGATTTTTGCAGTCAATCAATGTGATGGACTATTCTCTACTTGTGGGAGTGGATAGCCAACGCCATGAACTTGTTTGTGGCATCATTGACTATCTCAGACAATATACATGGGACAAACA</genome_strand>
        <mrna_strand>TCATCAAGGAAATTAAGAGAGCGGAATTTGACTCGTTCTTAAAGTTTGCTCCTAGTTATTTTGCATACATGGATCAGTGCCATGCTAAGAGGAATCAAACGTGCCTTGCAAAAATTCTTGGCATTTATCAG.....................................................................................................................GTCAATGTAAGGCCAAGAGGTGGAAAAGAGACTAGGCACGATCTCATGGTGATGGAGAACCTTTCATTTGGTAGAATTACTACTCGGCAGTATGATCTGAAAGGAGCTTTGCATGCTCGATTTAGTGCAGCTGGCAATGGTGCAGGAGACGTTCTTTTAGACCAAAACTTTGTGAATGACATGAATGTTTCTCCTTTATATGTCGGGACAAGATCAAAGAGGGCTTTGCAACGGGCTGTATGGAATGACTGTACTTTCCTCAAG................................................................................................................................................................................................................................................................TCAATCAATGTGATGGACTATTCTCTACTTGTGGGAGTGGATAGCCAACGCCATGAACTTGTTTGTGGCATCATTGACTATCTCAGACAATATACATGGGACAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E221151" ref_strand="+" ref_description="SGN-E221151 [cLEL-22-H1](-)">
      <seq>tggtgatggagagacctttcatttggtagaattactactcggcagtatgatctgaaaggagctttgcatgctcgatttagtgcagctggcaatggtgcaggagacgttcttttagaccaaaactttgtgaatgacatgaatgtttctcctttatatgtcgggacaagatcaaagagggctttgcaacgggctgtatggaatgactgtactttcctcaagtcaatcaatgtgatggactattctctacttgtgggagtggatagccaacgccatgaacttgtttgtggcatcattgactatctcagacaatatacatgggacaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32057" stop="30877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31757" g_stop="31540" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31539" i_stop="31284" i_length="256">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31283" g_stop="31177" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="326" r_length="107" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E221151" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31757" e_stop="31540"/>
          <exon e_start="31283" e_stop="31177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGATGGAGA-ACCTTTCATTTGGTAGAATTACTACTCGGCAGTATGATCTGAAAGGAGCTTTGCATGCTCGATTTAGTGCAGCTGGCAATGGTGCAGGAGACGTTCTTTTAGACCAAAACTTTGTGAATGACATGAATGTTTCTCCTTTATATGTCGGGACAAGATCAAAGAGGGCTTTGCAACGGGCTGTATGGAATGACTGTACTTTCCTCAAGGTAAGTCAGGGGTCAAACTGCTCTAACTCTAATTACCCGTAGCTCTATCCACCAAAACTTAAAAGCATCCAAAAAAAAAAGTCACTTCTGCTTATAATTATTACTCCCTCCCTTTCAATTTGGTCGTCTTATTTTCCTTTTTTAGTCGGTTTCAAAAAGAATGCAATTTTCCTTTTTTTGGCAATCTAATTGAAATGCATTATCTGAAGCTAATGGATTATCCTCTAAAACTGGTAGTATTTGTTGATTTTTGCAGTCAATCAATGTGATGGACTATTCTCTACTTGTGGGAGTGGATAGCCAACGCCATGAACTTGTTTGTGGCATCATTGACTATCTCAGACAATATACATGGGACAAACA</genome_strand>
        <mrna_strand>TGGTGATGGAGAGACCTTTCATTTGGTAGAATTACTACTCGGCAGTATGATCTGAAAGGAGCTTTGCATGCTCGATTTAGTGCAGCTGGCAATGGTGCAGGAGACGTTCTTTTAGACCAAAACTTTGTGAATGACATGAATGTTTCTCCTTTATATGTCGGGACAAGATCAAAGAGGGCTTTGCAACGGGCTGTATGGAATGACTGTACTTTCCTCAAG................................................................................................................................................................................................................................................................TCAATCAATGTGATGGACTATTCTCTACTTGTGGGAGTGGATAGCCAACGCCATGAACTTGTTTGTGGCATCATTGACTATCTCAGACAATATACATGGGACAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214964" ref_strand="+" ref_description="SGN-E214964 [cLEC-78-D14]">
      <seq>caaaagtaactctttgtttgccaaaacagttgatgatcggtttatcatcaaggaaattaagagagcggaatttgactcgttcttgaagtttgctcctagttattttgcatacatggatcagtgccatgctaagaggaatcaaacgtgccttgcaaaaattcttggcatttatcaggtcaatgtaaggccaagaggtggaaaagagactaggcacgatctcatggtgatggagaacctttcatttggtagaattactactcggcagtatgatctgaaaggagctttgcatgctcgatttagtgcagctggcaatggtgcaggagacgttcttttagaccaaaactttgtgaatgacatgaatgtttctcctttatatgtcgggacaagatcaaagagggctttgcaacgggctgtatggaatgactgtactttcctcaagtcaatcaatgtgatggactattctctacttgtgggagtggatagcccacgccatgaacttgtttgtggcatcattgactatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32395" stop="30901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32095" g_stop="31921" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31920" i_stop="31804" i_length="117">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31803" g_stop="31540" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="439" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31539" i_stop="31284" i_length="256">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31283" g_stop="31201" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="522" r_length="83" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E214964" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32095" e_stop="31921"/>
          <exon e_start="31803" e_stop="31540"/>
          <exon e_start="31283" e_stop="31201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGTAACTCTTTGTTTGCCAAAACAGTTGATGATCGGTTTATCATCAAGGAAATTAAGAGAGCGGAATTTGACTCGTTCTTGAAGTTTGCTCCTAGTTATTTTGCATACATGGATCAGTGCCATGCTAAGAGGAATCAAACGTGCCTTGCAAAAATTCTTGGCATTTATCAGGTTGATTAATCGACTTTAGTCACTCCACTTTTCTGGCTGTTACCACAATATATTTTTTTTCCTGCCAGCACACTCTGGACATCTTTTTGAGTGTTCCAACTGTTTTATGTTTTTCAGGTCAATGTAAGGCCAAGAGGTGGAAAAGAGACTAGGCACGATCTCATGGTGATGGAGAACCTTTCATTTGGTAGAATTACTACTCGGCAGTATGATCTGAAAGGAGCTTTGCATGCTCGATTTAGTGCAGCTGGCAATGGTGCAGGAGACGTTCTTTTAGACCAAAACTTTGTGAATGACATGAATGTTTCTCCTTTATATGTCGGGACAAGATCAAAGAGGGCTTTGCAACGGGCTGTATGGAATGACTGTACTTTCCTCAAGGTAAGTCAGGGGTCAAACTGCTCTAACTCTAATTACCCGTAGCTCTATCCACCAAAACTTAAAAGCATCCAAAAAAAAAAGTCACTTCTGCTTATAATTATTACTCCCTCCCTTTCAATTTGGTCGTCTTATTTTCCTTTTTTAGTCGGTTTCAAAAAGAATGCAATTTTCCTTTTTTTGGCAATCTAATTGAAATGCATTATCTGAAGCTAATGGATTATCCTCTAAAACTGGTAGTATTTGTTGATTTTTGCAGTCAATCAATGTGATGGACTATTCTCTACTTGTGGGAGTGGATAGCCAACGCCATGAACTTGTTTGTGGCATCATTGACTATCT</genome_strand>
        <mrna_strand>CAAAAGTAACTCTTTGTTTGCCAAAACAGTTGATGATCGGTTTATCATCAAGGAAATTAAGAGAGCGGAATTTGACTCGTTCTTGAAGTTTGCTCCTAGTTATTTTGCATACATGGATCAGTGCCATGCTAAGAGGAATCAAACGTGCCTTGCAAAAATTCTTGGCATTTATCAG.....................................................................................................................GTCAATGTAAGGCCAAGAGGTGGAAAAGAGACTAGGCACGATCTCATGGTGATGGAGAACCTTTCATTTGGTAGAATTACTACTCGGCAGTATGATCTGAAAGGAGCTTTGCATGCTCGATTTAGTGCAGCTGGCAATGGTGCAGGAGACGTTCTTTTAGACCAAAACTTTGTGAATGACATGAATGTTTCTCCTTTATATGTCGGGACAAGATCAAAGAGGGCTTTGCAACGGGCTGTATGGAATGACTGTACTTTCCTCAAG................................................................................................................................................................................................................................................................TCAATCAATGTGATGGACTATTCTCTACTTGTGGGAGTGGATAGCCCACGCCATGAACTTGTTTGTGGCATCATTGACTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458152" ref_strand="+" ref_description="SGN-E458152 [cPRO-4-H14]">
      <seq>gatgtttcgtgacgtagaaaaagctttgaaggcaatagagtctcaatttgttggaactactctaaatcttcaaggatcaattaagaaattttctgaaattgagaaaatgttgaaggaagagagaactcaatttgagattggtattcaaaatgtcgttatggatgggaatcgggatgtcgtcatgtataaacttctaatgttgaatagaatacggctggagcttttgctggtgtcctgtgtgtgggatcgccgccttcgttcattactatcatctgattgtaccgctgccaatccccaaactattgaccagagtatctatgctattaaccacagggaacaactagagagaagcaatgttaaaggagacactaaaggttatctggaaagagatgacagagcattggaagattgtccggatctgaaaatcaagctagttgaagactcttgtggagatgataacagcacgacagaaactactgtaggaagtcctggtgatgttttggatgctgactatgatctgaaaccgaatgttgaatcatctgctaaatttccccttgaagaaactccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34314" stop="32749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34014" g_stop="33879" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33878" i_stop="33481" i_length="398">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33480" g_stop="33049" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="568" r_length="432" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E458152" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E458152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34014" e_stop="33879"/>
          <exon e_start="33480" e_stop="33049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTTTTGTGATGTAGAAAAAGCTTTGAAGGCAATAGAGTCTCGATTTGTTGGAACTACTCTAAATCTTCAAGGATCAATTAGGAAATTTTCTGAAATTGAGAAAATGTTGAAGGAAGAGAGAACTCAATTTGAGGTTAGCTCTTTTTGCTTCCAGTTTCAGATTGATTGTTCCCGTTACATTCTATTTGATCAAAGTCGATGTGGTGGACTGTCATTCTAGTTCTAAGTTCCCTTTAGATTAATCAGATCAGTTGGTTCATTTTTTTCTACGGTATAATAATATTAATAGATATCAGATACATACAAGCACATGCTTTAAGAGTTGATAGCTTTCTGATTTTCTGGTTAATGAGAATCAACGTTAAGGTATAAGTCAATAAATGCATTTATGTGCATGTGTGGATGGGAAGCTATATCCAAACCTATTGCCTTTTTTCATTGAACTCATTTACTATTTATTTGGTCCAGACATTTATTAAAGCATAATGTAAATCTTATTTTACTATTACTAATCTGTGGATTCAATGTCAGATTGGTATTCAAAATGTCATTATGGATGGCAATCGGGATGTCGTCATGTATAAACTTCTAATTTTGAATAGAATACGGTTGGAGCTTTTGCTGGAGTCCTGTGTGTGGGATCGCCGTCTTCATTCATTACTATCATCTGATTGTACCGCTGCCAATCCAAAAACTATTGACAAGAGTATCATTGCTATTAACCACATGGAACAACAAGAGGGAAGCAATGTTAATGGACACACTAAAGTTTATCTGGAAAGAGATGACAGAGCATTGGAAGATTGTCCGGATCTGAAAATCAAGCTAGTTGAAGACTCTTGCGGAGATGATAACAGTAGGACAGAAGCTACTGTAGGCAGTCGTGGTGATGTTTTGGATGATGACTGTGATTTGAAACCGAATGTTGAATCATCTGCTAAAGTTCCCATTAAAGAAACTCCC</genome_strand>
        <mrna_strand>GATGTTTCGTGACGTAGAAAAAGCTTTGAAGGCAATAGAGTCTCAATTTGTTGGAACTACTCTAAATCTTCAAGGATCAATTAAGAAATTTTCTGAAATTGAGAAAATGTTGAAGGAAGAGAGAACTCAATTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTATTCAAAATGTCGTTATGGATGGGAATCGGGATGTCGTCATGTATAAACTTCTAATGTTGAATAGAATACGGCTGGAGCTTTTGCTGGTGTCCTGTGTGTGGGATCGCCGCCTTCGTTCATTACTATCATCTGATTGTACCGCTGCCAATCCCCAAACTATTGACCAGAGTATCTATGCTATTAACCACAGGGAACAACTAGAGAGAAGCAATGTTAAAGGAGACACTAAAGGTTATCTGGAAAGAGATGACAGAGCATTGGAAGATTGTCCGGATCTGAAAATCAAGCTAGTTGAAGACTCTTGTGGAGATGATAACAGCACGACAGAAACTACTGTAGGAAGTCCTGGTGATGTTTTGGATGCTGACTATGATCTGAAACCGAATGTTGAATCATCTGCTAAATTTCCCCTTGAAGAAACTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245575" ref_strand="+" ref_description="SGN-E245575 [cLEF-43-G17]">
      <seq>ttctgatatcaagccgtagggcttcaaaagggactatgtgtgcacatggtcatttttctcgcattaagttctaccaaaattttgatattccgcttggaagctttttgcagcaaaatttgctaagtcagaaactcccatgcaagagctgtgatggacctcctgaagctcacattttctattatgcacattacaataagttacttgcaattcaagttcgttctcttccaaaagacaaggggcttccaggtgaaagggaaggtaagatttggatgtggagtcgttgtggtagatgcaagttccagagtggcagctcaaaatctacgaaaagagttttagtatccactggttcacgtggtttctcatttggaaaatttttggagctcaggttctcaaattcttctttgttcaataggctacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35516" stop="34280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35216" g_stop="35089" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35088" i_stop="34871" i_length="218">
            <donor d_prob="0.847" d_score="1.00"/>
            <acceptor a_prob="0.326" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34870" g_stop="34580" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="419" r_length="291" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E245575" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35216" e_stop="35089"/>
          <exon e_start="34870" e_stop="34580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGATATCAAGCCGTAATGCTTCAAAAGGGACTATGTGTGCACATGGTCATTTTTCTCGCATTAAGTTCTACCAAAATTTTGATATTCCGCTTGGAAGCTTTTTGCAGCAAAATTTGCTAAGTCAGGTGCGTAGAACTCAATAGTCTCCAGTTCAGCTCTTCTTGTTCTGTCTCTGTAGTTGCAATATGATGAACAATTTTCTTTGGAATGATTGGTGGTCATTTTGCTGATTTCATCATTAATAGTTGCTATAATGATCTATTTGAAATAAAATTGTGGCCTTATCATTATCAGTTACACTGGAGTTTGTTTTAAATGTTAACCTTAAAGCCCTGTCATACAGAAACTCCCATGCAAGAGCTGTGATGGACCTCCTGAAGCTCACATTTTCTATTATGCACATTACAATAAGTTACTTGCAATTCAAGTTCGTTCTCTTCCAAAAGACAAGGGGCTTCCAGGTGAAAGGGAAGGTAAGATTTGGATGTGGAGTCGTTGTGGTAGATGCAAGTTCCAGAGTGGCAGCTCAAAATCTACGAAAAGAGTTTTAGTATCCACTGGTTCACGTGGTTTCTCATTTGGAAAATTTTTGGAGCTCAGGTTCTCAAATTCTTCTTTGTTCAATAGGCTACCT</genome_strand>
        <mrna_strand>TTCTGATATCAAGCCGTAGGGCTTCAAAAGGGACTATGTGTGCACATGGTCATTTTTCTCGCATTAAGTTCTACCAAAATTTTGATATTCCGCTTGGAAGCTTTTTGCAGCAAAATTTGCTAAGTCAG..........................................................................................................................................................................................................................AAACTCCCATGCAAGAGCTGTGATGGACCTCCTGAAGCTCACATTTTCTATTATGCACATTACAATAAGTTACTTGCAATTCAAGTTCGTTCTCTTCCAAAAGACAAGGGGCTTCCAGGTGAAAGGGAAGGTAAGATTTGGATGTGGAGTCGTTGTGGTAGATGCAAGTTCCAGAGTGGCAGCTCAAAATCTACGAAAAGAGTTTTAGTATCCACTGGTTCACGTGGTTTCTCATTTGGAAAATTTTTGGAGCTCAGGTTCTCAAATTCTTCTTTGTTCAATAGGCTACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E423240" ref_strand="+" ref_description="SGN-E423240 [STM-41-B4]">
      <seq>actagcatttgcacttctttacatttctctccatctcattttcttcattctcagaggcaattactccaataacaaacacacaaatcttccaccaggctcaaatggatggccaattcttggagaaaacattcacatggcttactcatcatccccagaaaaattcatccatgaaagaatggaaaaacactcatcacaagtctttaaaacctccctctttggtgaaaaaatcgcgattttctgtggctctaatggtaacaagtttttgttttcaaatgaaaacaaacttcttaccacatggtggccacagtctctaaccaaaccactcatgtgcccaactcaatctcaatctcaaaattctgtcaaaaaaatctctctttcaaatcgcgaattccttcttgagatcctaaaacccgaaaatctcaaacaatacatcccttttatggattccatggctcgtgatcacttaaaacaagaatgggtccctttcaaagaagtcaaaatttaccctctagtaaaaaatatactttcagcttagcttgcaattactcttatcaatagaggattttcgacacgttaaaaagttattggaccctttcgttcttgtaacgtcngggttgtttaccgtggcaattaatttacctggtacgccttataatcgagcgataaaagggggaaaaatggtgcgtgaggagcttatgaagattattaaggagaggaagatcaatgagaaaaataattatagtaatgacttgttgtctcaacttacaagttttactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="+" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52957" stop="54328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53304" g_stop="54028" g_length="725"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="779" r_length="723" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="+" ref_id="SGN-E423240" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E423240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53304" e_stop="54028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATTACTCCAATAACAAACACACAAATCTTCCACTAGGCTCAAATGGATGGCCAATTCTTGGAGAAAACATTGACATGGCTTACTCATCATCCCCAGAGAAATTCATTCATGAAAGAATGGAAAAACACTCATCACAAGTCTTTAAAACCTCCCTCTTAGGCCAAAAAATCGCGATTTTTTGTGGCACTAGTGGTAACAAGTTCTTGTTTTCGAATGAAAACAAACTTCTTACCACATGGTGGCCACCGTCTCTAACCAAACCACTCATGTGCCCGACTCAATCTCAATCTCAAAATTCTGTCAAAGAAATCGCTCTTTTAAATCGCGGATTCCTACGTGAGATCCTAAAACCCGAAAATCTCAAACAATACATCCCTTTTATGGATTCCATGGCTCGTGATCACTTAAAACAAGAATGGATCCCTTTCAAAGAAGTCAAAATTTACCCTCTAGTAAAAAAATATACTTTCAGCTTAGCTTGCAAATTGTTCCTATCAATAGATGATTTTCGACACGTTAAAAAGTTATCGGACCCTTTCGTTCTTGTAACGTCAGGGATGTTTACGGTGCCAATTAATTTGCCCGGTACGCCTTATAATCGCGCGATAAAAGGGGGGAAAATGGTGCATGAGGAGCTTATGAAGATTATTAAGGAGAGGAAGATCAATGAGAAAAATAATCATAGTAATGATTTATTGTCTCAACTTATAAGTTTTAGTGAT</genome_strand>
        <mrna_strand>GCAATTACTCCAATAACAAACACACAAATCTTCCACCAGGCTCAAATGGATGGCCAATTCTTGGAGAAAACATTCACATGGCTTACTCATCATCCCCAGAAAAATTCATCCATGAAAGAATGGAAAAACACTCATCACAAGTCTTTAAAACCTCCCTCTTTGGTGAAAAAATCGCGATTTTCTGTGGCTCTAATGGTAACAAGTTTTTGTTTTCAAATGAAAACAAACTTCTTACCACATGGTGGCCACAGTCTCTAACCAAACCACTCATGTGCCCAACTCAATCTCAATCTCAAAATTCTGTCAAAAAAATCTCTCTTTCAAATCGCGAATTCCTTCTTGAGATCCTAAAACCCGAAAATCTCAAACAATACATCCCTTTTATGGATTCCATGGCTCGTGATCACTTAAAACAAGAATGGGTCCCTTTCAAAGAAGTCAAAATTTACCCTCTAGT-AAAAAATATACTTTCAGCTTAGCTTGC-AATTACTCTTATCAATAGAGGATTTTCGACACGTTAAAAAGTTATTGGACCCTTTCGTTCTTGTAACGTCNGGGTTGTTTACCGTGGCAATTAATTTACCTGGTACGCCTTATAATCGAGCGATAAAAGGGGGAAAAATGGTGCGTGAGGAGCTTATGAAGATTATTAAGGAGAGGAAGATCAATGAGAAAAATAATTATAGTAATGACTTGTTGTCTCAACTTACAAGTTTTACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450047" ref_strand="+" ref_description="SGN-E450047 [cSTS-8-A10]">
      <seq>actagcatttgcacttctttacatttctctccatctcattttcttcattctcagaggcaattactccaataacaaacacacaaatcttccaccaggctcaaatggatggccaattcttggagaaaacattcacatggcttactcatcatccccagaaaaattcatccatgaaagaatggaaaaacactcatcacaagtctttaaaacctccctctttggtgaaaaaatcgcgattttctgtggctctaatggtaacaagtttttgttttcaaatgaaaacaaacttcttaccacatggtggccacagtctctaaccaaaccactcatgtgcccaactcaatctcaatctcaaaattctgtcaaaaaaatctctctttcaaatcgcgaattccttcttgagatcctaaaacccgaaaatctcaaacaatacatcccttttatggattccatggctcgtgatcacttaaaacaagaatgggtccctttcaaagaagtcaaaatttaccctctagtaaaaaaatatactttcagcttagcttgcaaattactcttatcaatagaggattttcgacacgttaaaaagttattggaccctttcgttcttgtaacgtcggggttgtttaccgtgccaattaatttacctggtacgccttataatcgagcgataaaagggggaaaaatggtgcgtgaggagcttatgaagattattaaggagagggagatcaatgagaaaaaataatatagtaatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="+" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52957" stop="54299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53304" g_stop="53999" g_length="696"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="752" r_length="696" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="+" ref_id="SGN-E450047" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E450047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53304" e_stop="53999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATTACTCCAATAACAAACACACAAATCTTCCACTAGGCTCAAATGGATGGCCAATTCTTGGAGAAAACATTGACATGGCTTACTCATCATCCCCAGAGAAATTCATTCATGAAAGAATGGAAAAACACTCATCACAAGTCTTTAAAACCTCCCTCTTAGGCCAAAAAATCGCGATTTTTTGTGGCACTAGTGGTAACAAGTTCTTGTTTTCGAATGAAAACAAACTTCTTACCACATGGTGGCCACCGTCTCTAACCAAACCACTCATGTGCCCGACTCAATCTCAATCTCAAAATTCTGTCAAAGAAATCGCTCTTTTAAATCGCGGATTCCTACGTGAGATCCTAAAACCCGAAAATCTCAAACAATACATCCCTTTTATGGATTCCATGGCTCGTGATCACTTAAAACAAGAATGGATCCCTTTCAAAGAAGTCAAAATTTACCCTCTAGTAAAAAAATATACTTTCAGCTTAGCTTGCAAATTGTTCCTATCAATAGATGATTTTCGACACGTTAAAAAGTTATCGGACCCTTTCGTTCTTGTAACGTCAGGGATGTTTACGGTGCCAATTAATTTGCCCGGTACGCCTTATAATCGCGCGATAAAAGGGGGGAAAATGGTGCATGAGGAGCTTATGAAGATTATTAAGGAGAGGAAGATCAATGAGAAAAATAATCATAGTAATGATT</genome_strand>
        <mrna_strand>GCAATTACTCCAATAACAAACACACAAATCTTCCACCAGGCTCAAATGGATGGCCAATTCTTGGAGAAAACATTCACATGGCTTACTCATCATCCCCAGAAAAATTCATCCATGAAAGAATGGAAAAACACTCATCACAAGTCTTTAAAACCTCCCTCTTTGGTGAAAAAATCGCGATTTTCTGTGGCTCTAATGGTAACAAGTTTTTGTTTTCAAATGAAAACAAACTTCTTACCACATGGTGGCCACAGTCTCTAACCAAACCACTCATGTGCCCAACTCAATCTCAATCTCAAAATTCTGTCAAAAAAATCTCTCTTTCAAATCGCGAATTCCTTCTTGAGATCCTAAAACCCGAAAATCTCAAACAATACATCCCTTTTATGGATTCCATGGCTCGTGATCACTTAAAACAAGAATGGGTCCCTTTCAAAGAAGTCAAAATTTACCCTCTAGTAAAAAAATATACTTTCAGCTTAGCTTGCAAATTACTCTTATCAATAGAGGATTTTCGACACGTTAAAAAGTTATTGGACCCTTTCGTTCTTGTAACGTCGGGGTTGTTTACCGTGCCAATTAATTTACCTGGTACGCCTTATAATCGAGCGATAAAAGGGGGAAAAATGGTGCGTGAGGAGCTTATGAAGATTATTAAGGAGAGGGAGATCAATGAGAAAAAATAATATAGTAATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559573" ref_strand="+" ref_description="SGN-E559573 [19091]">
      <seq>caataacaaacacacaaatcttccaccaggctcaaatggatggccaattcttggagaaaacattcacatggcttactcatcatccccagaaaaattcatccatgaaagaatggaaaaacactcatcacaagtctttaaaacctccctctttggtgaaaaaatcgcgattttctgtggctctaatggtaacaagtttttgttttcaaatgaaaacaatcttcttaccacatggtggccacagtctctaaccaaaccactcatgtgcccaactcaatctcaatctcaaaattctgtcaaaaaaatctctctttcaaatcgcgaattccttcttgagatcctaaaacccgaaaatctcaaacaatacatcccttttatggattccatggctcgtgatcacttaaaacaagaatgggtccctttcaaagaagtcaaaatttaccctctagtaaaaaaatatactttcagcttagcttgcaaattactcttatcaatagaggattttcgacacgttaaaaagttattggaccctttcgttcttgtaacgtcggggttgtttaccgtgccaattaatttacctggtacgccttataatcgagcgataaaagggggaaaaatggtgcgtgaggagcttatgaagattattaaggagaggaagatcaatgagaaaaataattatagtaatgacttgtngtctcaacttacaagttttactgatgaaaatggtcaatctatgaatgatgcagagatttgcaataatattatagggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="+" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53014" stop="54380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53314" g_stop="54081" g_length="768"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="768" r_length="768" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="+" ref_id="SGN-E559573" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E559573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53314" e_stop="54081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATAACAAACACACAAATCTTCCACTAGGCTCAAATGGATGGCCAATTCTTGGAGAAAACATTGACATGGCTTACTCATCATCCCCAGAGAAATTCATTCATGAAAGAATGGAAAAACACTCATCACAAGTCTTTAAAACCTCCCTCTTAGGCCAAAAAATCGCGATTTTTTGTGGCACTAGTGGTAACAAGTTCTTGTTTTCGAATGAAAACAAACTTCTTACCACATGGTGGCCACCGTCTCTAACCAAACCACTCATGTGCCCGACTCAATCTCAATCTCAAAATTCTGTCAAAGAAATCGCTCTTTTAAATCGCGGATTCCTACGTGAGATCCTAAAACCCGAAAATCTCAAACAATACATCCCTTTTATGGATTCCATGGCTCGTGATCACTTAAAACAAGAATGGATCCCTTTCAAAGAAGTCAAAATTTACCCTCTAGTAAAAAAATATACTTTCAGCTTAGCTTGCAAATTGTTCCTATCAATAGATGATTTTCGACACGTTAAAAAGTTATCGGACCCTTTCGTTCTTGTAACGTCAGGGATGTTTACGGTGCCAATTAATTTGCCCGGTACGCCTTATAATCGCGCGATAAAAGGGGGGAAAATGGTGCATGAGGAGCTTATGAAGATTATTAAGGAGAGGAAGATCAATGAGAAAAATAATCATAGTAATGATTTATTGTCTCAACTTATAAGTTTTAGTGATGAAAATGGTCAATTTATGAATGATGCAGAGATTTACAATAATATTATAGGGTT</genome_strand>
        <mrna_strand>CAATAACAAACACACAAATCTTCCACCAGGCTCAAATGGATGGCCAATTCTTGGAGAAAACATTCACATGGCTTACTCATCATCCCCAGAAAAATTCATCCATGAAAGAATGGAAAAACACTCATCACAAGTCTTTAAAACCTCCCTCTTTGGTGAAAAAATCGCGATTTTCTGTGGCTCTAATGGTAACAAGTTTTTGTTTTCAAATGAAAACAATCTTCTTACCACATGGTGGCCACAGTCTCTAACCAAACCACTCATGTGCCCAACTCAATCTCAATCTCAAAATTCTGTCAAAAAAATCTCTCTTTCAAATCGCGAATTCCTTCTTGAGATCCTAAAACCCGAAAATCTCAAACAATACATCCCTTTTATGGATTCCATGGCTCGTGATCACTTAAAACAAGAATGGGTCCCTTTCAAAGAAGTCAAAATTTACCCTCTAGTAAAAAAATATACTTTCAGCTTAGCTTGCAAATTACTCTTATCAATAGAGGATTTTCGACACGTTAAAAAGTTATTGGACCCTTTCGTTCTTGTAACGTCGGGGTTGTTTACCGTGCCAATTAATTTACCTGGTACGCCTTATAATCGAGCGATAAAAGGGGGAAAAATGGTGCGTGAGGAGCTTATGAAGATTATTAAGGAGAGGAAGATCAATGAGAAAAATAATTATAGTAATGACTTGTNGTCTCAACTTACAAGTTTTACTGATGAAAATGGTCAATCTATGAATGATGCAGAGATTTGCAATAATATTATAGGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318108" ref_strand="+" ref_description="SGN-E318108 [cTOA-29-J7]">
      <seq>acccttttgcttagtttcctcttttcttgttgtgtgtgtaatcccactcagagcatctttaatctggtttgtcttcattacttttgcttattattgattggatttcatctattggtggactaattagggcttagtcttgttgtccactcatattaattagttgtctactattgctagtgtctgattttcgaatatcatattctcttcagaccccatttatgttgttgttgttggggggtttcaggattgttaaatgttttttttgaaaactttgtttctatgtaatttacttttctgttggaggttggtctgagggttgggggtaggatgttcgatggggatgctgttattcagtgtttggaaattaaatgtaggtttcaatgaacatggacggctttcttgtggtagtaattgcgaacatctctcctctgctcagtttgcctacgagccgtcttaggcacatctctctatcttaatttcttttaaatttcaaagacttaaaagtgtataaatatcctcatttgggattataactaattttctcaaataactaactaactacactcatttctgggtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="+" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56243" stop="57420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56543" g_stop="57120" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="578" r_length="578" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="+" ref_id="SGN-E318108" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56543" e_stop="57120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCTTTTGCTTAGTTTCCTCTTTTCTTGTTGTGTGTGTAATCCCACTCAGAGCATCTTTAATCTGGTTTGTCTTCATTACTTTTGCTTATTATTGATTGGATTTCATCTATTGGTGGACTAATTAGGGCTTAGTCTTGTTGTCCACTCATATTAATTAGTTGTCTACTATTGCTAGTGTCTGATTTTCGAATATCATATTCTCTTCAGACCCCATTTATGTTGTTGTTGTTGGGGGGTTTCAGGATTGTTAAATGTTTTTTTTGAAAACTTTGTTTCTATGTAATTTACTTTTCTGTTGGAGGTTGGTCTGAGGGTTGGGGGTAGGATGTTCGATGGGGATGCTGTTATTCAGTGTTTGGAAATTAAATGTAGGTTTCAATGAACATGGACGGCTTTCTTGTGGTAGTAATTGCGAACATCTCTCCTCTGCTCAGTTTGCCTACGAGCCGTCTTAGGCACATCTCTCTATCTTAGTTTCTTTTAAATTTCAAAGACTTAAAAGTGTATAAATATCCTCATTTGGGATTATAACTAATTTTCTCAAATAACTAACTAACTACACTCATTTCTGGTTTA</genome_strand>
        <mrna_strand>ACCCTTTTGCTTAGTTTCCTCTTTTCTTGTTGTGTGTGTAATCCCACTCAGAGCATCTTTAATCTGGTTTGTCTTCATTACTTTTGCTTATTATTGATTGGATTTCATCTATTGGTGGACTAATTAGGGCTTAGTCTTGTTGTCCACTCATATTAATTAGTTGTCTACTATTGCTAGTGTCTGATTTTCGAATATCATATTCTCTTCAGACCCCATTTATGTTGTTGTTGTTGGGGGGTTTCAGGATTGTTAAATGTTTTTTTTGAAAACTTTGTTTCTATGTAATTTACTTTTCTGTTGGAGGTTGGTCTGAGGGTTGGGGGTAGGATGTTCGATGGGGATGCTGTTATTCAGTGTTTGGAAATTAAATGTAGGTTTCAATGAACATGGACGGCTTTCTTGTGGTAGTAATTGCGAACATCTCTCCTCTGCTCAGTTTGCCTACGAGCCGTCTTAGGCACATCTCTCTATCTTAATTTCTTTTAAATTTCAAAGACTTAAAAGTGTATAAATATCCTCATTTGGGATTATAACTAATTTTCTCAAATAACTAACTAACTACACTCATTTCTGGGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E406531" ref_strand="+" ref_description="SGN-E406531 [PPI-4-I9]">
      <seq>taaaagtactgtcttttcttgaacaaaagacttcatcaactccgggaattggtgcgtataattgttgaccaccagaaatctagctgggacttcagggaaagtgaccctttcaattcagcagcaaccagctaataacaactgatcttacctctattattattcaattgatatcaactgcagggagtcttcttccaaccgtgaagcatcgagcgaatccacctaccaagcaactcgagcagtttggtggtgcctctgttccttctgaaataggactaatgttggtgctctgacatgtaatgttaatgcaactaaggcgaaagatcatcccaaccatgttgatcaaatgggagattgttctgtcgatgaacatgaggcgaaagatgaagatgaaccccatgaggaagagaaccttcctcctggttcctacgagattctgcagctggagaaagaggaaattcttgcacctcacactcacttttgcacaatttgtgggaagggatttaagagagatgccaatttgcggatgcacatgangggtcatgggggatgaatacaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="+" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56946" stop="58097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57246" g_stop="57797" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="+" ref_id="SGN-E406531" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E406531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57246" e_stop="57797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAGTA-TGTCTTTTCTTGAACAAAAGA-TTCATCAACTCCGGGAGCTGGTGCGTATAATTGTTGACCA-TAGAAGTCTAGCTGGGA-TTCAGGGAA-GTGAC-CTTTCAATTCAGCAACAA-CAGCTTATAACAGCTGATCTTACCTCTATTATTATTCAATTGATATCAACTGCAGGGAGTCTTCTTCCAACCGTGAAGCATCAAGCGAATCCACCTACCAAGCGACTCGAGCAGTTTGGTGGTGCTTCCGTTCCTTCTGAAACAGGTACTAATATTGGTGCTCTGACATGTAATGGTTATGTGCCCAAGGCAAAAGATCAGCTCAGCCATGTTGATCAAATGGGAGATTGTTTTGTTGATGAACATGAGGCGAAAGATGAAGATGAACCCCATGAGGAAGAGAACCTACCTCCTGGTTCCTACGAGATTCTGCAGCTGGAGAAAGAGGAAATTCTTGCACCTCATACTCACTTTTGCACAATTTGTGGGAAGGGATTTAAGAGAGATGCCAATTTGCGGATGCACATGAGGGGTCAT-GGGGATGAATACAAAAC</genome_strand>
        <mrna_strand>TAAAAGTACTGTCTTTTCTTGAACAAAAGACTTCATCAACTCCGGGAATTGGTGCGTATAATTGTTGACCACCAGAAATCTAGCTGGGACTTCAGGGAAAGTGACCCTTTCAATTCAGCAGCAACCAGCTAATAACAACTGATCTTACCTCTATTATTATTCAATTGATATCAACTGCAGGGAGTCTTCTTCCAACCGTGAAGCATCGAGCGAATCCACCTACCAAGCAACTCGAGCAGTTTGGTGGTGCCTCTGTTCCTTCTGAAATAGG-ACTAATGTTGGTGCTCTGACATGTAATGTTAATGCAACTAAGGCGAAAGATCATCCCAACCATGTTGATCAAATGGGAGATTGTTCTGTCGATGAACATGAGGCGAAAGATGAAGATGAACCCCATGAGGAAGAGAACCTTCCTCCTGGTTCCTACGAGATTCTGCAGCTGGAGAAAGAGGAAATTCTTGCACCTCACACTCACTTTTGCACAATTTGTGGGAAGGGATTTAAGAGAGATGCCAATTTGCGGATGCACATGANGGGTCATGGGGGATGAATACAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270054" ref_strand="+" ref_description="SGN-E270054 [cLEM-7-G21]">
      <seq>ccccatgaggaagagaacctacctcctggttcctacgagattctgcagctggagaaagaggaaattcttgcacctcatactcacttttgcacaatttgtgggaagggatttaagagagatgccaatttgcggatgcacatgaggggtcatggggatgaatacaaaacttcagctgctcttataaagcctcagaaggattccagctctgggacgacgcttattaaaaggtattcatgtccttgtattggttgcaagcgcaataaagagcacaaaaagtttcagccactaaagactatcttatgtgtgaaaaaccattacagaagaactcactgtgagaaaagatatgcttgtagtaggtgcaatttgaagaaattttcagttattgcagatcttagaacacatgagaaacattgtggtaaagataaatggctttgttcttgtggaacaaccttttccaggaaagacaagcttttcgggcacatttcccttttccaaggacacacacctgcaattcctctagatgaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="+" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="57331" stop="58458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57631" g_stop="58158" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="+" ref_id="SGN-E270054" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57631" e_stop="58158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCATGAGGAAGAGAACCTACCTCCTGGTTCCTACGAGATTCTGCAGCTGGAGAAAGAGGAAATTCTTGCACCTCATACTCACTTTTGCACAATTTGTGGGAAGGGATTTAAGAGAGATGCCAATTTGCGGATGCACATGAGGGGTCATGGGGATGAATACAAAACTTCAGCTGCTCTTATAAAGCCTCAGAAGGATTCCAGCTCTGGGACGACGCTTATTAAAAGGTATTCATGTCCTTGTATTGGTTGCAAGCGCAATAAAGAGCACAAAAAGTTTCAGCCACTAAAGACTATCTTATGTGTGAAAAACCATTACAGAAGAACTCACTGTGAGAAAAGATATGCTTGTAGTAGGTGCAATTTGAAGAAATTTTCAGTTATTGCAGATCTTAGAACACATGAGAAACATTGTGGTAAAGATAAATGGCTTTGTTCTTGTGGAACAACCTTTTCCAGGAAAGACAAGCTTTTCGGGCACATTTCCCTTTTCCAAGGACACACACCTGCAATTCCTCTAGATGAAACC</genome_strand>
        <mrna_strand>CCCCATGAGGAAGAGAACCTACCTCCTGGTTCCTACGAGATTCTGCAGCTGGAGAAAGAGGAAATTCTTGCACCTCATACTCACTTTTGCACAATTTGTGGGAAGGGATTTAAGAGAGATGCCAATTTGCGGATGCACATGAGGGGTCATGGGGATGAATACAAAACTTCAGCTGCTCTTATAAAGCCTCAGAAGGATTCCAGCTCTGGGACGACGCTTATTAAAAGGTATTCATGTCCTTGTATTGGTTGCAAGCGCAATAAAGAGCACAAAAAGTTTCAGCCACTAAAGACTATCTTATGTGTGAAAAACCATTACAGAAGAACTCACTGTGAGAAAAGATATGCTTGTAGTAGGTGCAATTTGAAGAAATTTTCAGTTATTGCAGATCTTAGAACACATGAGAAACATTGTGGTAAAGATAAATGGCTTTGTTCTTGTGGAACAACCTTTTCCAGGAAAGACAAGCTTTTCGGGCACATTTCCCTTTTCCAAGGACACACACCTGCAATTCCTCTAGATGAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E425291" ref_strand="-" ref_description="SGN-E425291 [STM-44-J14]">
      <seq>tgtgagaaaagatatgcttgtagtaggtgcaatttgaagaaattttcagttattgcagatcttagaacacatgagaaacattgtggtaaagataaatggctttgttcttgtggaacaaccttttccaggaaagacaagcttttcgggcacatttcccttttccaaggacacacacctgcaattcctctagataaaaccaaaggttttgctcggacatccgatcaaggccaaaccaatgatgcaactacaaagcctggaaatatagattttgaggtaaatgttcagaatgacagtggacttcaaaatactatgaatgttaaagggagtacagataaccctgacagttatttctcatctttgaactttgaaactagcaagcttaacgaactgcaagagtttcctcaaccaccatttgaggaccaagaaaactcattctcttttctactgtcaggttcatgtaattacccccggaaggttggaaaaaacataggttctactacactggaatagttcaagtgaatttgtctttggtttaatgctgtctagttttctttttatgtcagttctttgtgaataaatgacgtctttcattaaaaaaaaaaaaaaaaaaaaaactcgagactagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="+" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="57661" stop="58851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57961" g_stop="58551" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="594" polyA_stop="615"/>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="+" ref_id="SGN-E425291" ref_strand="-">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E425291" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="57961" e_stop="58551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGAGAAAAGATATGCTTGTAGTAGGTGCAATTTGAAGAAATTTTCAGTTATTGCAGATCTTAGAACACATGAGAAACATTGTGGTAAAGATAAATGGCTTTGTTCTTGTGGAACAACCTTTTCCAGGAAAGACAAGCTTTTCGGGCACATTTCCCTTTTCCAAGGACACACACCTGCAATTCCTCTAGATGAAACCAAAGGTTTTGCTCAGACATCCAATCAAGGCC-AACCAATGATGCAACTACAAAGGCTGGAAATATAGATTTTGAGATAAATGTTCAGAATGACAGTGGACCTCAAAATACAATGAATGTTAAAGGGTGTACAGATAACCCTGACAGTTATTTCTCATCTTCGAACTTTGAAACTATCAAGCTTAACGAACTGCAAGAGTTCCCTCAACCATCATTTGAGGACCAAGAAAACTCATTCTCTTTTCTACTGTCAGGTTCATGTAATTACCCCCGGAAGGCTGG-AAAAACATAGGTTCTACTGAACTGGAATAGTTCAAGTAAATTTGTCTTTGGTTTAATGGTGTCTAGTTTTCTTATTATGTCAGTTCTTTATGAATAAATGACGTCTTTCATTA</genome_strand>
        <mrna_strand>TGTGAGAAAAGATATGCTTGTAGTAGGTGCAATTTGAAGAAATTTTCAGTTATTGCAGATCTTAGAACACATGAGAAACATTGTGGTAAAGATAAATGGCTTTGTTCTTGTGGAACAACCTTTTCCAGGAAAGACAAGCTTTTCGGGCACATTTCCCTTTTCCAAGGACACACACCTGCAATTCCTCTAGATAAAACCAAAGGTTTTGCTCGGACATCCGATCAAGGCCAAACCAATGATGCAACTACAAAGCCTGGAAATATAGATTTTGAGGTAAATGTTCAGAATGACAGTGGACTTCAAAATACTATGAATGTTAAAGGGAGTACAGATAACCCTGACAGTTATTTCTCATCTTTGAACTTTGAAACTAGCAAGCTTAACGAACTGCAAGAGTTTCCTCAACCACCATTTGAGGACCAAGAAAACTCATTCTCTTTTCTACTGTCAGGTTCATGTAATTACCCCCGGAAGGTTGGAAAAAACATAGGTTCTACTACACTGGAATAGTTCAAGTGAATTTGTCTTTGGTTTAATGCTGTCTAGTTTTCTTTTTATGTCAGTTCTTTGTGAATAAATGACGTCTTTCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E598272" ref_strand="+" ref_description="SGN-E598272 [73942]">
      <seq>ggcacgaggctgtcaggatcatgtaattacccccggaaggttggaaaaaacataggttctactacactggaatagttcaagtgaatttgtctttggtttaatgctgtctagttttcttattatgtcagttctttgtgaataaatgacgtctttcattagtgtgcattgctctttttgactgcttaaaaatgttatatctggcttcgactaggtacttggcaagtctgtaatcccaagtcaacaatatcagaatatttttttatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="+" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58104" stop="58938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58411" g_stop="58635" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="243" r_length="227" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58636" i_stop="58708" i_length="73">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58709" g_stop="58726" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="261" r_length="18" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="+" ref_id="SGN-E598272" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>243</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E598272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58411" e_stop="58635"/>
          <exon e_start="58709" e_stop="58726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCATGTAATTACCCCCGGAAGGCTGG-AAAAACATAGGTTCTACTGAACTGGAATAGTTCAAGTAAATTTGTCTTTGGTTTAATGGTGTCTAGTTTTCTTATTATGTCAGTTCTTTATGAATAAATGACGTCTTTCATTAGTGTGCATTGCTCTTTTTGACTGCTTAAAAATGTTATACCTGGC-TCGACTAGGTACTTGGCAAGACTCTAATCTCAAGTCAACAATAAATGCATTATTCGTCTAAAGCCGTGCTATAGAAGTTGAGAGGAAGACATTTCTTAGATAATTGTTGATACATATTAGAATATTTTTTT</genome_strand>
        <mrna_strand>GATCATGTAATTACCCCCGGAAGGTTGGAAAAAACATAGGTTCTACTACACTGGAATAGTTCAAGTGAATTTGTCTTTGGTTTAATGCTGTCTAGTTTTCTTATTATGTCAGTTCTTTGTGAATAAATGACGTCTTTCATTAGTGTGCATTGCTCTTTTTGACTGCTTAAAAATGTTATATCTGGCTTCGACTAGGTACTTGGCAAGTCTGTAATCCCAAGTCAACA.........................................................................ATATCAGAATATTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E414593" ref_strand="+" ref_description="SGN-E414593 [STM-19-F12]">
      <seq>acgggccccccctcgagactagttctatcagagtcatattctctttatctggtgttacaatttgttcactattcttactcatatttgagagaattgtagatgatccgacattttctgtgtaatattcaagaccttcagcttgtgtgagtatggaatcaaaagtctctttcattggggaagatctaaaagattttggattcttaatttgttctgaacagctcatcttcttcattgaccttggtgaatgagtgtttgcggaaaaatccactttgtccagagtaaaattctcttcaccattctcatccatacaacaagaaagcacaggttttgtagtttgtccatcagtaagacatgagttcttctcggacccaagtaagagagaactaggaacatggttctctttgtctggaatgaaggcatcttcttcatccttgtttccactagaaaaaggatcattgagaactgattccattgcaaccttctcatgatcaagtgtgtgaacttcagtatcaatgtcaactttttcaataaaagctctatctcgaccagtttgaatctgaacactggaacattttccccgtctagaccaaatgttcaaacatctttgctgagatcttactggagtactatctgcattttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="+" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60215" stop="61436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60522" g_stop="61136" g_length="615"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="642" r_length="612" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="+" ref_id="SGN-E414593" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E414593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60522" e_stop="61136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTCATATTCTCTTTATCTGGAGTGAAAATTTGTTCACTATTCTTAATTATATTTGAGAGCAAAGTAGATGATCCGACATTCTCTGTGTAATATTCAAGACCTTCAGCTTGTGTTAGTATGGAATCAAAAGCCTCTTTCATTGGGGAAGATCTAAAAGATTTTGGATTCTTAATTTGCTGCTCTGAACAGCTCATCTTCTTCATTGACCTTGGTGAATGAGTGTTTGCGGAAAAATCCACTTTTTCCAGAGTAATATTCTCTTCACCATTCTCATCCATACAACAAGAAAGAATAGGTTTTGTAGCTTGTCCATCAGCAAGACATGAGTTCTTCTCGGACCCAAGTAAGAGAGAACTAGGAACATGGTTCTCTTTGTCTGGAGTGAAGGCGTCTTCTTCATCCTTGTTTCCAACAGAAAAAGGATCATGGAAAACTGATTCCATTGCAACCTTCTCATGATCACCTGTGTGAACTTCAGTATCAATGTCAACTTTTTCAATAACAGCTCTATCTCGGCCAGTTTGAATCTGAACAGTAGAATATTTTCCCCGTCTAGACCAAATGTTCAAACATCTTTGCTGAGATCTTACTGGAGTACTATCTTCATTTTCTG</genome_strand>
        <mrna_strand>GAGTCATATTCTCTTTATCTGGTGTTACAATTTGTTCACTATTCTTACTCATATTTGAGAGAATTGTAGATGATCCGACATTTTCTGTGTAATATTCAAGACCTTCAGCTTGTGTGAGTATGGAATCAAAAGTCTCTTTCATTGGGGAAGATCTAAAAGATTTTGGATTCTTAATTTG-T--TCTGAACAGCTCATCTTCTTCATTGACCTTGGTGAATGAGTGTTTGCGGAAAAATCCACTTTGTCCAGAGTAAAATTCTCTTCACCATTCTCATCCATACAACAAGAAAGCACAGGTTTTGTAGTTTGTCCATCAGTAAGACATGAGTTCTTCTCGGACCCAAGTAAGAGAGAACTAGGAACATGGTTCTCTTTGTCTGGAATGAAGGCATCTTCTTCATCCTTGTTTCCACTAGAAAAAGGATCATTGAGAACTGATTCCATTGCAACCTTCTCATGATCAAGTGTGTGAACTTCAGTATCAATGTCAACTTTTTCAATAAAAGCTCTATCTCGACCAGTTTGAATCTGAACACTGGAACATTTTCCCCGTCTAGACCAAATGTTCAAACATCTTTGCTGAGATCTTACTGGAGTACTATCTGCATTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E474126" ref_strand="+" ref_description="SGN-E474126 [cSTB-34-F4]">
      <seq>ataatttgaagagattttggtagttggtttacacccagattgttacattgtattggaacacccaagcattagcagatttcacctcacaattcactctaatccctcttctcattccctctctgttattgatctgtcttcggtccatgggtcatggatttctggaaacaagattgaaccaggggttcgagttgagttgaaagagggcgataagatgaagctaggaggttcaagaagggaatacatgctgcactggattccaataagtcgcgcatatgatttggagaatccatttgtagctccactatgtgaggaagaaccattcaaagaaatggatgagaaagaacatcacgatgagaatggctttgctcttcagaatgagggtgatgatttggtgcaggatcaagattcatcattttcttgtccgagtttgttgccatacattaaatgtccaactccgtcagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62507" stop="61027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62207" g_stop="62068" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62067" i_stop="61713" i_length="355">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61712" g_stop="61504" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="349" r_length="209" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61503" i_stop="61426" i_length="78">
            <donor d_prob="0.994" d_score="0.88"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61425" g_stop="61312" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="463" r_length="114" r_score="0.877"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E474126" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E474126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62207" e_stop="62068"/>
          <exon e_start="61712" e_stop="61504"/>
          <exon e_start="61425" e_stop="61312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTTGAAGAGATTTTGGTAGTTGGAAGACACCCAGATTGTAACATTGTACTGGAACACCCAAGCATTAGCAGATTTCACCTCCGAATTCACTCTAATCCCTCTTCTCATTCCCTCTCTGTTATTGATCTGTCTTCGGGTAATTCCTAATTCAAACTCTGCCTTTTGAAGTTTTTCTTTCTTTTTCAGTATTAAGTATGTAGATTTCTTGATTTTGTACGAGGTCAGCATCCCAGAAAGATAATACTCTTTTTGTACAATTTACGTGACACTTTCCTTTTTAGTCCGTCCTAAAAAATGTTATTTTTCTACAATTAGGACGATTTTTAAAGTCAAAAAGTGAAATTTTACAAGAGCTTTTTCCAAGTCTTGCATATTTAGGGATTTTTATGAATGTGATTGTTCCTATGAAAATCTTTTTCTCTTGACTAGACAAGAAATCCATGAATTCACATTTCTTTTTATTGTTTCACTGTGATTTGTTGCTGCTTCAGTCCATGGGTCATGGATTTCTGGTAGCAAGATTGAACCAGGGGTTCGAGTTGAGTTGAAAGAGGGTGATAAGATGAAGCTAGGAGGTTCAAGCAGGGAATACATGCTTCACTGGATTCCAATAAGTCGCGCATATGATTTAGAGAATCCGTTTGTAGCTCCGCTAGGTGAGGCAGAACCATTCGAAGAAATGGAGGAGAAAGAACATCAGGTGAGCTGTAGTAGTTTACCTGTATGTTTTCAACGATTTTGTACCCGTAGTGTCTAATTTATCATTTTCTTTTTCTAGGATGAGAATGGCTTTGCTCTTCAGAATGAGGGTGATGATTTGGTGAATAAGCAAGATTCATCGTGTTCTTATTCGAGTTTGTTGCCATATGTTAAATGTTTGACTCCGTCGGCT</genome_strand>
        <mrna_strand>ATAATTTGAAGAGATTTTGGTAGTTGGTTTACACCCAGATTGTTACATTGTATTGGAACACCCAAGCATTAGCAGATTTCACCTCACAATTCACTCTAATCCCTCTTCTCATTCCCTCTCTGTTATTGATCTGTCTTCGG...................................................................................................................................................................................................................................................................................................................................................................TCCATGGGTCATGGATTTCTGGAAACAAGATTGAACCAGGGGTTCGAGTTGAGTTGAAAGAGGGCGATAAGATGAAGCTAGGAGGTTCAAGAAGGGAATACATGCTGCACTGGATTCCAATAAGTCGCGCATATGATTTGGAGAATCCATTTGTAGCTCCACTATGTGAGGAAGAACCATTCAAAGAAATGGATGAGAAAGAACATCAC..............................................................................GATGAGAATGGCTTTGCTCTTCAGAATGAGGGTGATGATTTGGTGCAGGATCAAGATTCATCATTTTCTTGTCCGAGTTTGTTGCCATACATTAAATGTCCAACTCCGTCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E400421" ref_strand="+" ref_description="SGN-E400421 [cSTC-8-N19]">
      <seq>ctcttctctctcccatggcggaaaagcaagaatctttgggaaaacccaattcgcagagtgaagaagagaagaagattccagtgtttacagtgctaaagaatggcgccatcctcaagaacatctttcttcttgacaatcccccggccacacctgttgcaatcacagcaanatcaagaatttgaagagattttggtagttggaagacacccagattgtaacattgtattggaacacccaagcattagcagatttcacctcagaattcactctaatccctcttctcattccctctctgctattgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62679" stop="61776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62379" g_stop="62076" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E400421" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E400421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62379" e_stop="62076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTTCTCTCCCATGGCGGAAAAGCAAGAATCTTTGGGAAAACCCAATTCGCAGAGTGAAGAAGAGAAGAAGATTCCAGTGTTTACGGTGCTAAAGAATGGTGCCATCCTCAAGAATATCTTTCTTCTTGACAATCCCCCTGTCACACCTGTTGCAATCACAGCAA-ATCAAGAATTTGAAGAGATTTTGGTAGTTGGAAGACACCCAGATTGTAACATTGTACTGGAACACCCAAGCATTAGCAGATTTCACCTCCGAATTCACTCTAATCCCTCTTCTCATTCCCTCTCTGTTATTGATCT</genome_strand>
        <mrna_strand>CTCTTCTCTCTCCCATGGCGGAAAAGCAAGAATCTTTGGGAAAACCCAATTCGCAGAGTGAAGAAGAGAAGAAGATTCCAGTGTTTACAGTGCTAAAGAATGGCGCCATCCTCAAGAACATCTTTCTTCTTGACAATCCCCCGGCCACACCTGTTGCAATCACAGCAANATCAAGAATTTGAAGAGATTTTGGTAGTTGGAAGACACCCAGATTGTAACATTGTATTGGAACACCCAAGCATTAGCAGATTTCACCTCAGAATTCACTCTAATCCCTCTTCTCATTCCCTCTCTGCTATTGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334725" ref_strand="+" ref_description="SGN-E334725 [cTOE-3-E13]">
      <seq>ccaagaattcgctactgcaagaactaggcttagcaagttccacaggctgagtaagagtagtaaccattcccctatacgtgaaaccaggaaggatccctttcccgtcaggagactgtcttctgttccagtaatcgattttaacatggatcgactcaaagctttggatgtcattgatcgagtggacacaattcgaagtacataatggtacactgatatagctgggttggcagagaggggatcctttatttgaggcatcatttttctgctgcatttggttatcttctttatgctaagcatgagccgatcattttcctctactgacgtcgtactatgttctaagtttgtgatggggaacaacaagatatcagaaaagcgttcaaaatctgctatctgttctgctgcaaattttccggtaaagttagggtactatgatgggtgaaagtattctggcctggtttggtattgtctggtctctgtgcttgcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64277" stop="63192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63977" g_stop="63492" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E334725" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63977" e_stop="63492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGAATTCGCTACTGCAAGAACTAGGCTTAGCAAGTTCCACAGGCTGAGTAAGAGTAGTAACCATTCCCCTATACGTGAAACCAGGAAGGATCCCTTTCCCGTCAGGAGACTGTCTTCTGTTCCAGTAATCGATTTTAACATGGATCGACTCAAAGCTTTGGATGTCATTGATCGAGTGGACACAATTCGAAGTACATAATGGTACACTGATATAGCTGGGTTGGCAGAGAGGGGATCCTTTATTTGAGGCATCATTTTTCTGCTGCATTTGGTTATCTTCTTTATGCTAAGCATGAGCCGATCATTTTCCTCTACTGACGTCGTACTATGTTCTAAGTTTGTGATGGGGAACAACAAGATATCAGAAAAGCGTTCAAAATCTGCTATCTGTTCTGCTGCAAATTTTCCGGTAAAGTTAGGGTACTATGATGGGTGAAAGTATTCTGGCCTGGTTTGGTATTGTCTGGTCTCTGTGCTTGCAAG</genome_strand>
        <mrna_strand>CCAAGAATTCGCTACTGCAAGAACTAGGCTTAGCAAGTTCCACAGGCTGAGTAAGAGTAGTAACCATTCCCCTATACGTGAAACCAGGAAGGATCCCTTTCCCGTCAGGAGACTGTCTTCTGTTCCAGTAATCGATTTTAACATGGATCGACTCAAAGCTTTGGATGTCATTGATCGAGTGGACACAATTCGAAGTACATAATGGTACACTGATATAGCTGGGTTGGCAGAGAGGGGATCCTTTATTTGAGGCATCATTTTTCTGCTGCATTTGGTTATCTTCTTTATGCTAAGCATGAGCCGATCATTTTCCTCTACTGACGTCGTACTATGTTCTAAGTTTGTGATGGGGAACAACAAGATATCAGAAAAGCGTTCAAAATCTGCTATCTGTTCTGCTGCAAATTTTCCGGTAAAGTTAGGGTACTATGATGGGTGAAAGTATTCTGGCCTGGTTTGGTATTGTCTGGTCTCTGTGCTTGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347779" ref_strand="+" ref_description="SGN-E347779 [cTOF-26-F19]">
      <seq>ttggaagaggtgatggaaaagcttgtggacattgtccacttcctccatttggagatccatgctgcatttggaaactctgatggagaccgtccaataaaaaacaaccatcagagattaggatctgctggtcttgcattacattatgcaaatatcataactcagattgatacgcttgtcacgcgatcaggttcggtgcccccaaatacaagagatgctttataccaagggttgccaccaagcattaagtcagctttgcgattcaaattacaatccttccagctcaaggaagagttaactgtgcaacaaatcaaggctgaaatggagaaaacgctgcagtggcttgttcccatggcaaccaacacaaccaaggcccaccatggctttggatgggttggagaatgggcaaatacagggaaacctgctggccagactgatctacttcgaattgagacactatatcatgctgataaggagaaaaccgaagcttatattcttgaactggtggtgtggcttcactatcttgtcactcagtcgagaaattctacaaatggcggaatcagatctcctgtaaaatctccatcttgttaccctaatcaaaagatgaatcagttaacacacaagccaagttctccatcttccacattaacagttgaagaccaagagatgcttcnggatgtaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68130" stop="63709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68004" g_stop="67996" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67995" i_stop="67825" i_length="171">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67824" g_stop="67755" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="79" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67754" i_stop="67137" i_length="618">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67136" g_stop="67042" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="174" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67041" i_stop="65423" i_length="1619">
            <donor d_prob="0.723" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65422" g_stop="65306" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="291" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65305" i_stop="65199" i_length="107">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65198" g_stop="65122" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="368" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="65121" i_stop="64410" i_length="712">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64409" g_stop="64365" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="413" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="64364" i_stop="64278" i_length="87">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="64277" g_stop="64009" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="682" r_length="269" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E347779" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68004" e_stop="67996"/>
          <exon e_start="67824" e_stop="67755"/>
          <exon e_start="67136" e_stop="67042"/>
          <exon e_start="65422" e_stop="65306"/>
          <exon e_start="65198" e_stop="65122"/>
          <exon e_start="64409" e_stop="64365"/>
          <exon e_start="64277" e_stop="64009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAAGAGGTAGCAATTCATTCCTGATTTATCGTTTACCTTGATCTTAAATTTGATACTGGTAATGTGGTATCTAGTTTCTACATACTGCACAAGATGGGTGGTCTGTTTAAGATAAGCTGGCGAGGCTCCTTGCAAATTTGAATTGACTATCTAACATCTGCTTTGCCATAATTGAAGGTGATGGAAAAGCTTGTGGACATTGTCCACTTCCTCCATTTGGAGATCCATGCTGCATTTGGAAACTCTGGTAATGCTTTTGGAACTTCAAGTTCACTTTTTATCATGATTCGTGGATCATTGTTGTCTGCCTATATCGTGATTGACATTCAGATTAAATTTTTCTCATGTGTTAACTGCTCGTTTAGTTTTAAGTGTAAACAACAATTTGTTTCTACATTATAGACTAGAAAATTAGCACGTCTTGCTATTCACTAGGTGAGTAAAGATAGGGTACAACGGCTACCTATCAATTTTATCTGTTATGTGTACAAACAGTTAATGCACATGTGGTGATCGAGGGAAATCATAATCCAGGTTGAATTATGAGTTATCGGAGTTTATCATGTAACTAATAGAGTTAGAAGTCATTGTCATGGCAGAACAATCGTGCTTGTTTGTTATTGCCTATGCTTATATTACAGCTCATGATGCTGATTCATTTCTTCCTATAAGGAAAGGTGTATTTTGTTTTATAAGGCAGGAATAGACAAAATCAATCGAAACAGTTAAAAAAAAATTTAACTCGTATTCTATAGGTGCTGAGCATTTAAAGTTAAATCATTCCTTTTATGCCTTCAATTTGTTTTTGAGTGACTGAATTTTACAATTTTTTACCTGACTGCTGTAATTTTGCCAAACCTTGCAGATGGAGACCGTCCAATAAAAAACAACCATCAGAGATTAGGATCTGCTGGTCTTGCATTACATTATGCAAATATCATAACTCAGATTGATACGCTTGTAAGCATTCCATGCACATACAATTATTAGAGAATCAGCACTTTTGACGCTATCATTTAATCTTTTGATTTCATTCATATCCTTGATGGAAATGTGGAATGAAGGTGATATCTTTTCCACCATTAAAGCTAAAATACTTTTTTTGTTTCTCGTCATAAATATGTCAAGCATTTATCTTCCTTGTAAATCATCATCTTATCCCAATAGATATGCTTTCATTCTTTGTATGTTTCATAAAGCTGTATGCTCTAATATCTATCAGTAATCACAATAAAAAATGGAGGTCTATCAATTGGACCAAAAACAAATGCTGCAAGAACTGCCACTAATGAAAATACTCAAATTGCCATTGTCTTTGTGAATTTCATATCATAATTAGAATTTTAAATCGATAGCTAGAACTCCAAGATCAGGTGTGAATTGTTCATGTGAAGATAGCAGTACTTTAAGGTTGTGATTTACTATAGAAGGCATTTGAAAAATCTTACTCTAAGTGCTTTCATGGTTTTCATCATCTCACTTACTGTTTAATATTGTATTTTTTTTAAGAACTCGAATCGTAAGTAGGTGGGTTTATTATATTAACTTAGGCTTTTTTTTCTTTTTGACTTAAATTTGATGTTTGACTTCATTTTTTTTTTTGGAAAAAAAAATAATGTAATATGTTACCCAAACTTTATGGTCCTTGTGTATAGCTTGTAATCTTCTCTTCGTTACCCAAACTTTATGGTCCTCATGTATCGCTGGCTTATATGCCTCATGTTTGGGTCTTGGGGACCTGTAAATATTTGGAAGTCTATTGTTACTAACTTGGCCGGAATGTAGATTAGTTCAAATGAAATTTTTGGGTAACCCAGCCATAGTTGTGGTGCCAGAGCTATTTTTTTGATTAGTTATATTTCTTCTAATAAATATTCTTGTAGACAAGCTAGATACAATGTATGAGAATTTTTATGAGAAATGCCTACTCTCTATGTTAGGCGGACTCTTCAAATCCCTGCCACACCCGTGCTGAGACGACATGGGTGTAGGATCCATAACTGATTTGGTCAGCTTATCTTGGGTACTTTGACCATCTAGACCAAGAAGTAAATATTGATTGGGTATTTAGTTTGATTTTCGGGTTTATGTCATATATATATATAAGAACGCTTTTCTATTTCGTGAGATAAGAATAAAATATTGGTGTTTAGAAGGAACGAAGGTTTAGTTCAATAACTTTAACTAATCGATATATTTACTTTATATGTCATAATAAACATTTATTGGTCATATCCCTGCACCCGTATCTGAACTCGGATTCATACCCTAATCCTAAAATTTATGTGATGAAGAATCCGACCCTCAGATCCGCATTCATGTCCGAGCAGCATAGCAGTTGCTCTAGTATCCTAAATTCGGGTGTTTCTCCATTTTAGCTCTCTTTCTTCAGACTGTAGAGGTGCCTAAGTAATGGGATCATACTTCTTACAGTCTCACAATCCTGCTGAAATTGTAACAAATTTGTTTTCTGGATTAGTTATGTTGTCGAATTGTATAATAATTATTTGTATAATTATGTTCTTTGTTGACATTTCTAATCAGAAACAAAAAGTGAGTATCATATTTTATATGATCAGGTCACGCGATCAGGTTCGGTGCCCCCAAATACAAGAGATGCTTTATACCAAGGGTTGCCACCAAGCATTAAGTCAGCTTTGCGATTCAAATTACAATCCTTCCAGCTCAAGGAAGAGGTACTCTTTATTTTGTCTTTCAAGAGTTTTTTTTTGTGGGTATTCTCAAGTTTCTGCCTTCTAGGCCGTTGAATGTTAGTAATACTCCAGATACTCTTATTGTGCAGTTAACTGTGCAACAAATCAAGGCTGAAATGGAGAAAACGCTGCAGTGGCTTGTTCCCATGGCAACCAACACAACCAAGTAAAACATCAATTTCCTAGCAATATATTCTTCAATTATAGCTTTCCAGTGATTCTTCATATGTTTCTTAGTCCAAAGAGGCCGTTCTGGTCAGCTATATTATATCAGTGGGTACTCTAAAGTAATTCTAATTTGAGTTTTCTTTTGACTGGTGTTCCGATAGGTGAGTGATGTGAATCCAAATCGTACTAAAATAAATGATTTTTTTAAGAAAATGATAGATTTCATTATCCATTGGATTGTTTGCTTGGAGGTTATCTTTCTTCTCTTGTAGATTTTAAATGAGCTAAATAGAGCAATGTTAAATAAGGGCAATTGTATGAAGAGTGCTATATTGTTTGTCCCTATAGTATATTTTGATTAGGAAAAAATAGAATCTTGTAGAAGGAAGGAAAGCAAAAGAAGAGTGTCTTGTTTCTGTGTTTTGGATTTGAAGGCGAAAGAATGTAAAAAATAGTTTCTTCATATTAGATTCCTTGATGTGCTTATGTTTCAGTTCCTTGGCTAAGATCAAGTGTAGTTTCTCATCTTATCAGTATAGCATCCTTATTTTTCTCCTTAATAACTCAGGCCTTTGGCCTACTAAAAGGAGTTGCATTGGATTTTTCTTCCCTCAACTTCTGTCCATTTTGTGTGAAAAGGTATATGTGTTATATCCTCCCCGTCTCCTTTTTTCTGATGAAGATCCACTGCCTTTACTCTTATTTTACAGGGCCCACCATGGCTTTGGATGGGTTGGAGAATGGGCAAATACAGGGTGAGCTTAATTATAAGAAACTTGTTCTTTACCGATTGAACTAATTTTATGGCAAGTATATATATTCATTTGGTCTGAAATGAACAGGAAACCTGCTGGCCAGACTGATCTACTTCGAATTGAGACACTATATCATGCTGATAAGGAGAAAACCGAAGCTTATATTCTTGAACTGGTGGTGTGGCTTCACTATCTTGTCACTCAGTCGAGAAATTCTACAAATGGCGGAATCAGATCTCCTGTAAAATCTCCATCTTGTTACCCTAATCAAAAGATGAATCAGTTAACACACAAGCCAAGTTCTCCATCTTCCACATTAACAGTTGAAGACCAAGAGATGCTTCGGGATGTAAGCA</genome_strand>
        <mrna_strand>TTGGAAGAG...........................................................................................................................................................................GTGATGGAAAAGCTTGTGGACATTGTCCACTTCCTCCATTTGGAGATCCATGCTGCATTTGGAAACTCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGACCGTCCAATAAAAAACAACCATCAGAGATTAGGATCTGCTGGTCTTGCATTACATTATGCAAATATCATAACTCAGATTGATACGCTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACGCGATCAGGTTCGGTGCCCCCAAATACAAGAGATGCTTTATACCAAGGGTTGCCACCAAGCATTAAGTCAGCTTTGCGATTCAAATTACAATCCTTCCAGCTCAAGGAAGAG...........................................................................................................TTAACTGTGCAACAAATCAAGGCTGAAATGGAGAAAACGCTGCAGTGGCTTGTTCCCATGGCAACCAACACAACCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCCACCATGGCTTTGGATGGGTTGGAGAATGGGCAAATACAGG.......................................................................................GAAACCTGCTGGCCAGACTGATCTACTTCGAATTGAGACACTATATCATGCTGATAAGGAGAAAACCGAAGCTTATATTCTTGAACTGGTGGTGTGGCTTCACTATCTTGTCACTCAGTCGAGAAATTCTACAAATGGCGGAATCAGATCTCCTGTAAAATCTCCATCTTGTTACCCTAATCAAAAGATGAATCAGTTAACACACAAGCCAAGTTCTCCATCTTCCACATTAACAGTTGAAGACCAAGAGATGCTTCNGGATGTAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343044" ref_strand="+" ref_description="SGN-E343044 [cTOF-11-E18]">
      <seq>attattagagaatcagcacttttgacgctatcatttaatcttttgatttcattcatatccttgatggaaatgtggaatgaaggtgatatcttttccaccattaaagctaaaatactttttttgtttctcgtcataaatatgtcaagcatttatcttccttgtaaatcatcatcttatcccaatagatatgctttcattctttgtatgtttcataaagctgtatgctctaatatctatcagtaatcacaataaaaaatggaggtctatcaattggaccaaaaacaaatgctgcaagaactgccactaatgaaaatactcaaattgccattgtctttgtgaatttcatatcataattagaattttaaatcgatagctagaactccaagatcaggtgtgaattgttcatgtgaagatagcagtactttaaggttgtgatttactatagaaggcatttgaaaaatcttactctaagtgctttcatggttttcatcatctcacttactgtttaatattgtattttttttaagaactcgaatcgtaagtaggtggggtttattatattaacttangcttttttttctttttgacttaaatttgatgtttgacttcattttttttttttggaaaaaaaaataatgtaatatgttacccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="67319" stop="66068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67019" g_stop="66368" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="654" r_length="654" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E343044" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67019" e_stop="66368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATTAGAGAATCAGCACTTTTGACGCTATCATTTAATCTTTTGATTTCATTCATATCCTTGATGGAAATGTGGAATGAAGGTGATATCTTTTCCACCATTAAAGCTAAAATACTTTTTTTGTTTCTCGTCATAAATATGTCAAGCATTTATCTTCCTTGTAAATCATCATCTTATCCCAATAGATATGCTTTCATTCTTTGTATGTTTCATAAAGCTGTATGCTCTAATATCTATCAGTAATCACAATAAAAAATGGAGGTCTATCAATTGGACCAAAAACAAATGCTGCAAGAACTGCCACTAATGAAAATACTCAAATTGCCATTGTCTTTGTGAATTTCATATCATAATTAGAATTTTAAATCGATAGCTAGAACTCCAAGATCAGGTGTGAATTGTTCATGTGAAGATAGCAGTACTTTAAGGTTGTGATTTACTATAGAAGGCATTTGAAAAATCTTACTCTAAGTGCTTTCATGGTTTTCATCATCTCACTTACTGTTTAATATTGTATTTTTTTTAAGAACTCGAATCGTAAGTAGGT-GGGTTTATTATATTAACTTAGGCTTTTTTTTCTTTTTGACTTAAATTTGATGTTTGACTTCA-TTTTTTTTTTTGGAAAAAAAAATAATGTAATATGTTACCCAAA</genome_strand>
        <mrna_strand>ATTATTAGAGAATCAGCACTTTTGACGCTATCATTTAATCTTTTGATTTCATTCATATCCTTGATGGAAATGTGGAATGAAGGTGATATCTTTTCCACCATTAAAGCTAAAATACTTTTTTTGTTTCTCGTCATAAATATGTCAAGCATTTATCTTCCTTGTAAATCATCATCTTATCCCAATAGATATGCTTTCATTCTTTGTATGTTTCATAAAGCTGTATGCTCTAATATCTATCAGTAATCACAATAAAAAATGGAGGTCTATCAATTGGACCAAAAACAAATGCTGCAAGAACTGCCACTAATGAAAATACTCAAATTGCCATTGTCTTTGTGAATTTCATATCATAATTAGAATTTTAAATCGATAGCTAGAACTCCAAGATCAGGTGTGAATTGTTCATGTGAAGATAGCAGTACTTTAAGGTTGTGATTTACTATAGAAGGCATTTGAAAAATCTTACTCTAAGTGCTTTCATGGTTTTCATCATCTCACTTACTGTTTAATATTGTATTTTTTTTAAGAACTCGAATCGTAAGTAGGTGGGGTTTATTATATTAACTTANGCTTTTTTTTCTTTTTGACTTAAATTTGATGTTTGACTTCATTTTTTTTTTTTGGAAAAAAAAATAATGTAATATGTTACCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E552364" ref_strand="+" ref_description="SGN-E552364 [cTSB-3-K7]">
      <seq>gatggattattttagtcactggagtcaatgaggaggcacacgaagatgatcttcataatacatttggtgagttcggggagatcaagaatttgcatttgaatctggatcgtcgttctggatttgtcaagggttatgcacttattgaatatgaaaactttgaagaagcagagagagctattagtgaaatggatgggaatgagctgctaactcagactatacatgttgattgggcattcagcaaaggtccttttagaaggagaaatgttaggaggaggtcacctcgtagtcatcgttctagaagtcccaggaggagattctagttctatgcacacacctatttgcaaggattatgtcactgacttctagagatcaggctctatgaattcctggtctatgctgtacgattgttcctttgccagtttttctttaattttctgttcccttaactctgctctaagtgaatgtatctcgagcttgcctggcctttgtgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaanngggggggggggggccgcccccccccccccccttggggggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78702" stop="7745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78402" g_stop="78275" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78274" i_stop="77885" i_length="390">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77884" g_stop="77739" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="274" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77738" i_stop="75838" i_length="1901">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75837" g_stop="75618" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="494" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75617" i_stop="73133" i_length="2485">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.66"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73132" g_stop="73063" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="564" r_length="70" r_score="0.700"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73062" i_stop="72483" i_length="580">
            <donor d_prob="0.000" d_score="0.68"/>
            <acceptor a_prob="0.000" a_score="0.52"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72482" g_stop="72429" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="618" r_length="54" r_score="0.481"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E552364" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78402" e_stop="78275"/>
          <exon e_start="77884" e_stop="77739"/>
          <exon e_start="75837" e_stop="75618"/>
          <exon e_start="73132" e_stop="73063"/>
          <exon e_start="72482" e_stop="72429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTCTGGATTTGTCAAGGTGAACTGACTCTTTCTTTCTCGGAATGTTTAGCTGCTTGCCTGCTTCTTTGGGTTTTGGGTGTTGTACATATGATGCTATATGAATTGCATCCCCATTGTATGCTTTAATCTAATAAACTTTCCTATCAAAAGATTTTGGATGATGACAAAATTCTTTTGATCAAGAAAAATTTGTTGAAGTTTATAAGTGACAGACATTCCTTCTTCCATATAACTATGTAAGAGCATTTCCTTGAATGAATCTGTAATGGAGTAAAATGGAATAAAATAGGATCAATGCTATGTTAATTATGAAGGATTCTAGATAGATACTTTTCTTTGTTTTAAGTTTCAACTTTTGTCGTAGTTTGGAGTGGTATAGTTTTTATACAGTTTTCCATTTTGACAGGGTTATGCACTTATTGAATATGAAAACTTTGAAGAAGCAGAGAGAGCTATTAGTGAAATGGATGGGAATGAGCTGCTAACTCAGACTATACATGTTGATTGGGCATTCAGCAAAGGTCCTTTTAGAAGGAGAAATGTTAGGAGGAGGTATTTTTCTTGGTTAATCCAATTAACATAATTTTGTGTAGAATAGCTGTGAAAAAATGTTGCCTGAATCAAGGATACACTTTTTCACTTTTAATCAATGTTGGCAAATGTTCCTTCAGAAGCATAGATTTACCCTCTTGACAAAAAGTCGGGGCCTTCAAATTATTTTCAGAGATTGGAATAGCTACTTCTTAAACATTTGCAACTGGATTAATGTTATGACGTCTGTAATTGTTTTCTTGCGAACTGTTTCACTATAATATATGTCGTTTATTGTATTGCCTTCAACTCCGTAGGAGTGGAATTGTCACTGGCCTCCCTCATGTTTTTGTTGATAAAAGTTACCAGCCCATTTCCTGTAATTCATGATTCAGCTGTCAGTTATGTGTGTGTGGGATCAATAATAACCACCTATTACTAAGACTCCCTTTTATTTAAACGTCTGGCAGCTGAATAGCCTGTGGATCAATATTATCTTAAATTTTTGCCTCATCTTTTATTCTTTTACGTTATAGTAGTTTTTTAATTCTATCAAAGCATTTCTCTGTGGAGGTGATGGACAGTGTATCCTTCAGTCGCTTAAATTCTCTTTTTTGCTCCCTGTTTTCTGAGGGTATGCATAATTGTTTGATTTATTTCCTTTTGCTGTTAATCTAGTTTCGGCCAAATCCCAGCTGAGATCATTGAATTAGGTTTCCTATTGATCATATTGTAGGCAAAAATTGATAACTTATCCCTCAATACATAGCTAGAAAAGTTCCAAATTGTTTAGCAGAAGTTTGAGTAGGATTAGCTCAATGATAAATACCAGTTCTCTGCAGCCTTATTTAGTAGACTAACTGCAAATTCTTATCAGACTTCTCTTCGGGTTTATTTGTCAAGTTTGCCAGCAATTAGAGAGCTGATTGTTTTGCAATATACATATGATTGCTATGGTTGTATGAAAATGTGTAGTGGTGGATTAGGTTTTCCTAACATCATTATGGTCACAATGATTGTCTGAAGATTTATGCATTTCTCACTCTCCCATGGATAGGTGTCCCCAGAGCAGTTTGGGCTTTTATTTAGCTTTTGGAGAGGGGTGCAAAGGTGGTGGAATTGATGCAAAAGACACTAGGAATGTGTCTGTGTGGGGTATGGGTTGCCATTTATAGTCAAATATAGGATAGGCTCTTCACATTTACCATTCGAAACTAACACGTGTCTTGTCGGAGATTTTCCTTTTTGGCAAAAAGGGAGTTGGATACCATATGATGAGCTCACACATAACCTATAAATCGGACTCTATTAGAGCAATGATGTAAGTCTGCGCATCTGTTTCCTGGAAATTTGTTAACCCTTGTTTAGTTATTGCAAATTACAGTGTCTCTGTGGTGCCATGAGTTGTGAAGGTGTTTCTAGTGTATCCATTAGAAAAAGAACAGAGGATGCTTATTATGCGCACAATGTCATGACTCTGCTTGTAATTGTTGAAGCTACAGACTAATAACTGGGTTGCTCAGACATATCAGTTTGAAAATACCAACTTAAGTTGTTGGTGCCCCATTCATAATGTTAGAAAAATAGGAAGAGTTAGAGATAAACAATATATTAAGCGAATTTTCTAGTCTGTTAGTGCCATTTTGAGCTGGTAGGAAGACTACTAATTATTTATTTTATGTTTGAAAAATGAAAGGTGAGAAAACTATGACTTATGAGAGAGTTGTTGCTCTATTGAGTCAATTTGGAGGAAAGTTTATCCTTGTTCTTTTAGATACTTCCCTTTATATGATAAATAGAAAATGAAATTCCTATGCGACTACATTACTGCAAAATCTATGTTTGAATGTTTGGAACATCACCCATATGATTTTTGTATTGAAGAACTATTGACTAACATGTAGCTGTCCTCGTCCTTGCAGGTCACCTCGTAGTCATCGTTCTAGAAGTCCCAGGAGGAGATTCTAGTTCTATGCACACACCTATTTGCAAGGATTATGTCACTGACTTCTAGAGATCAGGCTCTATGAATTCCTGGTCTATGCTGTACGATTGTTCCTTTGCCAGTTTTTCTTTAATTTTCTGTTCCCTTAACTCTGCTCTAAGTGAATGTATCTCGAGCTTGCCTGGCCTTTGTGAAAATTTAGATTCCTTTTATGAATATTTCAGAACTTTCCGGTTATCTTTTGAATTGGTTATGTTGGAGGCGGCATTGTGAGTTGATTGTCATGTAACATTTGTGGGTAATTTGATGTGTTTCAGTAGTGTGTACTAGCGATTTACCTTTTGAGTACATTTCCTTTAGCAGAAAGATTGAATATGTTTTGTGGAATTCATGACTTGAGAATAGCGAGTGGCACTGAAATTATAAAAACGAACAGTGGTAATTGAGAAGTTATGGTAAAAGGTGCTGACGATATATAATATAATATTATAAATGATGAGCATATGGTAATAATGACTTTTTTTCTCTCTTTGATGTAATTCATAATTACCTCGGGAAAAATAAATTTATATCACGTTGGGGTTTGACCATTAAAAAGACAAAAAAGCAAAGCAAGTGCACGATGACGTCTGGTGGGTTTGGTGTGGTTGAGGCAATTATTTTACTCTTTATCACTTTAACTATAGCCAAATTTTCCCCGTTAATCACATTTTAAAATTAAATAATATACCTTATTTAACTAATTATATTAAAGATTTTTCAAATATATTTTAATAATAGTATTAAATGAACTATATATAATAGAATATTCTTGATTTTTAAAATTAAAGATCTATATTTAATATAGGGTTTAAGTAATATAAACATAGGAAGGATAAGAAAATCGCTATATGGTGTTTCTTGAATAATAGAGACGGAAGTGTTCAAAGTCATATAAAGAATTATTATTGATAAAATAAAATTAAAATATTCACTATTTGTTCACTTTGATATTCTTGATATAAATTTATTACAACTATAATCATTTATTTACAATAAATAAATTAATATAAAAACCATTTTTTTTTTATTATAAAAACATAGTAAGAAAAAGTTAAACTCAATTCAATTTGTTGTTAAATATGATTAAAAACATTTGAACGCCGAGAGCGAAGTTTTGTTTTTTCAAGAACATAGATAACTCAACTCTGTGCGTGTGAGAGAGAGTTTTCCTACTCTACCGTGTCTGACTTGGGGGGTCTCTTTGCTTACTTCTTTGCCATTATTCTTGACCCAGCTTCCCCTTCCCTACTTTCTAACTCTCGAAAAATCCAACATCCATTAAGCAAAAAAAGCTACTAATCACTTGTATTACCCTTTTTTTCTCCCTTAATCAAGTGTATTTTGTTCTTCTTGAAAAAGGGGTTATTAGAATCTGTTGTGTCTTTGTTCAGATCCAAGTTATCATCTTTTTTGTTACCACTCTTTGTATCTTACTTGGTAAGCTTGCTTTGCCGCTTCATTATACAGCTGTTTCATGTGTTTTTATTCAGTATGTGACTGTGTCGGTCTCTTTTTCTTGTTTTCTTGCTGACTGATGAGGTAAAGTTGTGATCTTTTAGACCCTTCTAGCGTGTTTTGACTTACTTCTTTATAGTTCATGTTATAGAGGTGGATCTTGGATTTTTGTAGTAGTAGTCTCCTGCTTATTTGTGGAAGTGAGTGCAAACTTAATATATTTTACATTATATGTAGTTCAAGTTGAGAACAGTGGATTCCCTGTAGTGTTCTATGAGCTTTGGTGTTTCTTGTGGAAACATGCTGGTGGTATTTGATATCTTTTGCTAATAATATTGTACATTCTCCCATCTGGATGCCATTAAGTATTATGTATATCCTGCAAATTGGGTTTTTGCATTGCTTGTTTGTTGTTAATTTATTGAGATATAGAGGCACGCTTTTTTGATATTCTGTTCTTTGTGTTTGTGTCAGTTGAATTAGATCGTACCTATGCTCAGAGTTGATTGTTAATTTAATCATGCAGCTGAGCTCGAGGATCTGCTTGGTTTAGCTTAGACACATCTGAGAGGAGATTGTCAATCGGCTTTCTTGATATCGGTCCTCTGCTGCAGAAGTTTCTCAAGGCATTTATAGACTTTTGACTCAAATGTTGATGGAAGTTCGAGATTGAAGTAGGTTGAAGCATTATACGATAATGGGTGGCCTTTGCTCTAGAAGAGCCACCAGTGAGAATACAACAGGTCGTTCCATACCACATGTCAATGGTCACTTCAACTATGGTGCCGGAACAGTTTATCAGTCGCATAGATTGCCCCCACAGGCAAATAATGATTCTATGCAATCTCCACTGGGGGAAAGCACGGAGAATCAACCAAGTGAACCAGTGTTCTCTTTTCCAGAGTTGAATGCAGCTTCCCATGGGGTTGAAATGGATGCTATCAATGATGGAATTCCTCGATTGTCTAGGGCTTTATCAAATAAAACCAGACCAACAAGGTCAAAGCAAGTTGCCATGGCAAAGGTGAATAGTCTCCTATTCATTGTTCTTTCCTTTGTCCTATGGCTGATGCTTCTGTCTTTTTCCTATTGCATATGTGATTATGTAAAGTATTTCCATTTCACTGTCTTGACAATGGCCAAATGTAAGATAGGTTGTAAAAAATGAAGATACATCTACGAGTGAATAATTAATAAATAAAAAAAAAGAAATCAGATGAATAATTAAAAGGCAAACAAAGAGAAAAAAAAACAAGTGAGAATAATAGAGATGATACTATAACTGTCTGGGAAATCCAATGAAATGTTAAAGGAGCACATGATGTTCTATAACTTTGAAGTTGTGGTGCGTCCTAACTCCTATGTGAGTATAATATAGAGGGTAGACTTCAATAGTGTTGCTTTCTCTCTCTCAGACAAATACTCTCTTCCCTCCACCACCCTCCTCTAGAATTTCTTCATTGTAGGTTGTCACAAATCTTTATTTTTGAATTTTCTCTTCTAAGGAACTCAAAGAAGCAAAGACGATATTGGCAATTTAGTCACTTTTTGCAAGTTTCACTTACAAGTCCATGCCAAGCTGTGGATGTCTTGTAACTTATCCAATAGCACTAACTCTGACTTGTGTATACTGATACAAAGTCATGATATAGGTTCAGACTATATTAAGGTTTATCTAAGTATTGTCTGGTCTATGTCGAAGCCCACAAAAGATTAATATATCAGTGATGAACAATAAATGAGATATGTCCTTCCTTTCTCCGCTTCCATTACTACCTAGAGTCTCTTTATGAATCCAACATACCACCATACGCTCCATGAGTCTATTGAGGGAGAACAAAAAAGAAGCAGAGGTAATGGCCCCCCTTGCCTATTCCCTCTTAAGCTCC</genome_strand>
        <mrna_strand>GATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTCTGGATTTGTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................GGTTATGCACTTATTGAATATGAAAACTTTGAAGAAGCAGAGAGAGCTATTAGTGAAATGGATGGGAATGAGCTGCTAACTCAGACTATACATGTTGATTGGGCATTCAGCAAAGGTCCTTTTAGAAGGAGAAATGTTAGGAGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACCTCGTAGTCATCGTTCTAGAAGTCCCAGGAGGAGATTCTAGTTCTATGCACACACCTATTTGCAAGGATTATGTCACTGACTTCTAGAGATCAGGCTCTATGAATTCCTGGTCTATGCTGTACGATTGTTCCTTTGCCAGTTTTTCTTTAATTTTCTGTTCCCTTAACTCTGCTCTAAGTGAATGTATCTCGAGCTTGCCTGGCCTTTGTGAAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAANNGGGGGGGGGGGGGCCGCCCCCCCCCCCCCCCTTGGGGGGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226380" ref_strand="+" ref_description="SGN-E226380 [cLEL-26-B17](-)">
      <seq>tgttgattgggcattcagcaaaggtccttttagaaggagaaatgttaggaggaggtcacctcgtagtcatcgttctagaagtcccaggaggagattctagttctatgcacacacctatttgcaaggattatgtcactgacttctagagatcaggctctatgaattcctggtctatgctgtacgattgttcctttgccagtttttctttaattttctgttcccttaactctgctctaagtgaatgtatctcgagcttgcctggcctttgtgaaaatttagattccttttatgaatatttcagaactttccggttatcttttgaattggttatgttggaggcggcattgtgagttgattgtcatgtaacatttgtgggtaatttgatgtgtttcagtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78092" stop="7756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77792" g_stop="77739" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77738" i_stop="75838" i_length="1901">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75837" g_stop="75496" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="396" r_length="342" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75495" i_stop="73109" i_length="2387">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.66"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73108" g_stop="73065" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="440" r_length="44" r_score="0.659"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E226380" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77792" e_stop="77739"/>
          <exon e_start="75837" e_stop="75496"/>
          <exon e_start="73108" e_stop="73065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGATTGGGCATTCAGCAAAGGTCCTTTTAGAAGGAGAAATGTTAGGAGGAGGTATTTTTCTTGGTTAATCCAATTAACATAATTTTGTGTAGAATAGCTGTGAAAAAATGTTGCCTGAATCAAGGATACACTTTTTCACTTTTAATCAATGTTGGCAAATGTTCCTTCAGAAGCATAGATTTACCCTCTTGACAAAAAGTCGGGGCCTTCAAATTATTTTCAGAGATTGGAATAGCTACTTCTTAAACATTTGCAACTGGATTAATGTTATGACGTCTGTAATTGTTTTCTTGCGAACTGTTTCACTATAATATATGTCGTTTATTGTATTGCCTTCAACTCCGTAGGAGTGGAATTGTCACTGGCCTCCCTCATGTTTTTGTTGATAAAAGTTACCAGCCCATTTCCTGTAATTCATGATTCAGCTGTCAGTTATGTGTGTGTGGGATCAATAATAACCACCTATTACTAAGACTCCCTTTTATTTAAACGTCTGGCAGCTGAATAGCCTGTGGATCAATATTATCTTAAATTTTTGCCTCATCTTTTATTCTTTTACGTTATAGTAGTTTTTTAATTCTATCAAAGCATTTCTCTGTGGAGGTGATGGACAGTGTATCCTTCAGTCGCTTAAATTCTCTTTTTTGCTCCCTGTTTTCTGAGGGTATGCATAATTGTTTGATTTATTTCCTTTTGCTGTTAATCTAGTTTCGGCCAAATCCCAGCTGAGATCATTGAATTAGGTTTCCTATTGATCATATTGTAGGCAAAAATTGATAACTTATCCCTCAATACATAGCTAGAAAAGTTCCAAATTGTTTAGCAGAAGTTTGAGTAGGATTAGCTCAATGATAAATACCAGTTCTCTGCAGCCTTATTTAGTAGACTAACTGCAAATTCTTATCAGACTTCTCTTCGGGTTTATTTGTCAAGTTTGCCAGCAATTAGAGAGCTGATTGTTTTGCAATATACATATGATTGCTATGGTTGTATGAAAATGTGTAGTGGTGGATTAGGTTTTCCTAACATCATTATGGTCACAATGATTGTCTGAAGATTTATGCATTTCTCACTCTCCCATGGATAGGTGTCCCCAGAGCAGTTTGGGCTTTTATTTAGCTTTTGGAGAGGGGTGCAAAGGTGGTGGAATTGATGCAAAAGACACTAGGAATGTGTCTGTGTGGGGTATGGGTTGCCATTTATAGTCAAATATAGGATAGGCTCTTCACATTTACCATTCGAAACTAACACGTGTCTTGTCGGAGATTTTCCTTTTTGGCAAAAAGGGAGTTGGATACCATATGATGAGCTCACACATAACCTATAAATCGGACTCTATTAGAGCAATGATGTAAGTCTGCGCATCTGTTTCCTGGAAATTTGTTAACCCTTGTTTAGTTATTGCAAATTACAGTGTCTCTGTGGTGCCATGAGTTGTGAAGGTGTTTCTAGTGTATCCATTAGAAAAAGAACAGAGGATGCTTATTATGCGCACAATGTCATGACTCTGCTTGTAATTGTTGAAGCTACAGACTAATAACTGGGTTGCTCAGACATATCAGTTTGAAAATACCAACTTAAGTTGTTGGTGCCCCATTCATAATGTTAGAAAAATAGGAAGAGTTAGAGATAAACAATATATTAAGCGAATTTTCTAGTCTGTTAGTGCCATTTTGAGCTGGTAGGAAGACTACTAATTATTTATTTTATGTTTGAAAAATGAAAGGTGAGAAAACTATGACTTATGAGAGAGTTGTTGCTCTATTGAGTCAATTTGGAGGAAAGTTTATCCTTGTTCTTTTAGATACTTCCCTTTATATGATAAATAGAAAATGAAATTCCTATGCGACTACATTACTGCAAAATCTATGTTTGAATGTTTGGAACATCACCCATATGATTTTTGTATTGAAGAACTATTGACTAACATGTAGCTGTCCTCGTCCTTGCAGGTCACCTCGTAGTCATCGTTCTAGAAGTCCCAGGAGGAGATTCTAGTTCTATGCACACACCTATTTGCAAGGATTATGTCACTGACTTCTAGAGATCAGGCTCTATGAATTCCTGGTCTATGCTGTACGATTGTTCCTTTGCCAGTTTTTCTTTAATTTTCTGTTCCCTTAACTCTGCTCTAAGTGAATGTATCTCGAGCTTGCCTGGCCTTTGTGAAAATTTAGATTCCTTTTATGAATATTTCAGAACTTTCCGGTTATCTTTTGAATTGGTTATGTTGGAGGCGGCATTGTGAGTTGATTGTCATGTAACATTTGTGGGTAATTTGATGTGTTTCAGTAGTGTGTACTAGCGATTTACCTTTTGAGTACATTTCCTTTAGCAGAAAGATTGAATATGTTTTGTGGAATTCATGACTTGAGAATAGCGAGTGGCACTGAAATTATAAAAACGAACAGTGGTAATTGAGAAGTTATGGTAAAAGGTGCTGACGATATATAATATAATATTATAAATGATGAGCATATGGTAATAATGACTTTTTTTCTCTCTTTGATGTAATTCATAATTACCTCGGGAAAAATAAATTTATATCACGTTGGGGTTTGACCATTAAAAAGACAAAAAAGCAAAGCAAGTGCACGATGACGTCTGGTGGGTTTGGTGTGGTTGAGGCAATTATTTTACTCTTTATCACTTTAACTATAGCCAAATTTTCCCCGTTAATCACATTTTAAAATTAAATAATATACCTTATTTAACTAATTATATTAAAGATTTTTCAAATATATTTTAATAATAGTATTAAATGAACTATATATAATAGAATATTCTTGATTTTTAAAATTAAAGATCTATATTTAATATAGGGTTTAAGTAATATAAACATAGGAAGGATAAGAAAATCGCTATATGGTGTTTCTTGAATAATAGAGACGGAAGTGTTCAAAGTCATATAAAGAATTATTATTGATAAAATAAAATTAAAATATTCACTATTTGTTCACTTTGATATTCTTGATATAAATTTATTACAACTATAATCATTTATTTACAATAAATAAATTAATATAAAAACCATTTTTTTTTTATTATAAAAACATAGTAAGAAAAAGTTAAACTCAATTCAATTTGTTGTTAAATATGATTAAAAACATTTGAACGCCGAGAGCGAAGTTTTGTTTTTTCAAGAACATAGATAACTCAACTCTGTGCGTGTGAGAGAGAGTTTTCCTACTCTACCGTGTCTGACTTGGGGGGTCTCTTTGCTTACTTCTTTGCCATTATTCTTGACCCAGCTTCCCCTTCCCTACTTTCTAACTCTCGAAAAATCCAACATCCATTAAGCAAAAAAAGCTACTAATCACTTGTATTACCCTTTTTTTCTCCCTTAATCAAGTGTATTTTGTTCTTCTTGAAAAAGGGGTTATTAGAATCTGTTGTGTCTTTGTTCAGATCCAAGTTATCATCTTTTTTGTTACCACTCTTTGTATCTTACTTGGTAAGCTTGCTTTGCCGCTTCATTATACAGCTGTTTCATGTGTTTTTATTCAGTATGTGACTGTGTCGGTCTCTTTTTCTTGTTTTCTTGCTGACTGATGAGGTAAAGTTGTGATCTTTTAGACCCTTCTAGCGTGTTTTGACTTACTTCTTTATAGTTCATGTTATAGAGGTGGATCTTGGATTTTTGTAGTAGTAGTCTCCTGCTTATTTGTGGAAGTGAGTGCAAACTTAATATATTTTACATTATATGTAGTTCAAGTTGAGAACAGTGGATTCCCTGTAGTGTTCTATGAGCTTTGGTGTTTCTTGTGGAAACATGCTGGTGGTATTTGATATCTTTTGCTAATAATATTGTACATTCTCCCATCTGGATGCCATTAAGTATTATGTATATCCTGCAAATTGGGTTTTTGCATTGCTTGTTTGTTGTTAATTTATTGAGATATAGAGGCACGCTTTTTTGATATTCTGTTCTTTGTGTTTGTGTCAGTTGAATTAGATCGTACCTATGCTCAGAGTTGATTGTTAATTTAATCATGCAGCTGAGCTCGAGGATCTGCTTGGTTTAGCTTAGACACATCTGAGAGGAGATTGTCAATCGGCTTTCTTGATATCGGTCCTCTGCTGCAGAAGTTTCTCAAGGCATTTATAGACTTTTGACTCAAATGTTGATGGAAGTTCGAGATTGAAGTAGGTTGAAGCATTATACGATAATGGGTGGCCTTTGCTCTAGAAGAGCCACCAGTGAGAATACAACAGGTCGTTCCATACCACATGTCAATGGTCACTTCAACTATGGTGCCGGAACAGTTTATCAGTCGCATAGATTGCCCCCACAGGCAAATAATGATTCTATGCAATCTCCACTGGGGGAAAGCACGGAGAATCAACCAAGTGAACCAGTGTTCTCTTTTCCAGAGTTGAATGCAGCTTCCCATGGGGTTGAAATGGATGCTATCAATGATGGAATTCCTCGATTGTCTAGGGCTTTATCAAATAAAACCAGACCAACAAGGTCAAAGCAAGTTGCCATGGCAAAGGTGAATAGTCTCCTATTCATTGTTCTTTCCTTTGTCCTATGGCTGATGCTTCTGTCTTTTTCCTATTGCATATGTGATTATGTAAAGTATTTCCATTTCACTGTCTTGACAATGGCCAAATGTAAGATAGGTTGTAAAAAATGAAGATACATCTACGAGTGAATAATTAATAAATAAAAAAAAAGAAATCAGATGAATAATTAAAAGGCAAACAAAGAGAAAAAAAAAC</genome_strand>
        <mrna_strand>TGTTGATTGGGCATTCAGCAAAGGTCCTTTTAGAAGGAGAAATGTTAGGAGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACCTCGTAGTCATCGTTCTAGAAGTCCCAGGAGGAGATTCTAGTTCTATGCACACACCTATTTGCAAGGATTATGTCACTGACTTCTAGAGATCAGGCTCTATGAATTCCTGGTCTATGCTGTACGATTGTTCCTTTGCCAGTTTTTCTTTAATTTTCTGTTCCCTTAACTCTGCTCTAAGTGAATGTATCTCGAGCTTGCCTGGCCTTTGTGAAAATTTAGATTCCTTTTATGAATATTTCAGAACTTTCCGGTTATCTTTTGAATTGGTTATGTTGGAGGCGGCATTGTGAGTTGATTGTCATGTAACATTTGTGGGTAATTTGATGTGTTTCAGTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226461" ref_strand="+" ref_description="SGN-E226461 [cLEL-26-B17](-)">
      <seq>gggcattcagcaaaggtccttttagaaggagaaatgttaggaggaggtcacctcgtagtcatcgttctagaagtcccaggaggagattctagttctatgcacacacctatttgcaaggattatgtcactgacttctagagatcaggctctatgaattcctggtctatgctgtacgattgttcctttgccagtttttctttaattttctgttcccttaactctgctctaagtgaatgtatctcgagcttgcctggcctttgtgaaaatttagattccttttatgaatatttcagaactttccggttatcttttgaattggttatgttggaggcggcattgtgagttgattgtcatgtaacatttgtgggtaatttgatgtgtttccgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78084" stop="7756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77784" g_stop="77739" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77738" i_stop="75838" i_length="1901">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75837" g_stop="75496" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="388" r_length="342" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75495" i_stop="73109" i_length="2387">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.66"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73108" g_stop="73065" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="432" r_length="44" r_score="0.659"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E226461" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77784" e_stop="77739"/>
          <exon e_start="75837" e_stop="75496"/>
          <exon e_start="73108" e_stop="73065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGCATTCAGCAAAGGTCCTTTTAGAAGGAGAAATGTTAGGAGGAGGTATTTTTCTTGGTTAATCCAATTAACATAATTTTGTGTAGAATAGCTGTGAAAAAATGTTGCCTGAATCAAGGATACACTTTTTCACTTTTAATCAATGTTGGCAAATGTTCCTTCAGAAGCATAGATTTACCCTCTTGACAAAAAGTCGGGGCCTTCAAATTATTTTCAGAGATTGGAATAGCTACTTCTTAAACATTTGCAACTGGATTAATGTTATGACGTCTGTAATTGTTTTCTTGCGAACTGTTTCACTATAATATATGTCGTTTATTGTATTGCCTTCAACTCCGTAGGAGTGGAATTGTCACTGGCCTCCCTCATGTTTTTGTTGATAAAAGTTACCAGCCCATTTCCTGTAATTCATGATTCAGCTGTCAGTTATGTGTGTGTGGGATCAATAATAACCACCTATTACTAAGACTCCCTTTTATTTAAACGTCTGGCAGCTGAATAGCCTGTGGATCAATATTATCTTAAATTTTTGCCTCATCTTTTATTCTTTTACGTTATAGTAGTTTTTTAATTCTATCAAAGCATTTCTCTGTGGAGGTGATGGACAGTGTATCCTTCAGTCGCTTAAATTCTCTTTTTTGCTCCCTGTTTTCTGAGGGTATGCATAATTGTTTGATTTATTTCCTTTTGCTGTTAATCTAGTTTCGGCCAAATCCCAGCTGAGATCATTGAATTAGGTTTCCTATTGATCATATTGTAGGCAAAAATTGATAACTTATCCCTCAATACATAGCTAGAAAAGTTCCAAATTGTTTAGCAGAAGTTTGAGTAGGATTAGCTCAATGATAAATACCAGTTCTCTGCAGCCTTATTTAGTAGACTAACTGCAAATTCTTATCAGACTTCTCTTCGGGTTTATTTGTCAAGTTTGCCAGCAATTAGAGAGCTGATTGTTTTGCAATATACATATGATTGCTATGGTTGTATGAAAATGTGTAGTGGTGGATTAGGTTTTCCTAACATCATTATGGTCACAATGATTGTCTGAAGATTTATGCATTTCTCACTCTCCCATGGATAGGTGTCCCCAGAGCAGTTTGGGCTTTTATTTAGCTTTTGGAGAGGGGTGCAAAGGTGGTGGAATTGATGCAAAAGACACTAGGAATGTGTCTGTGTGGGGTATGGGTTGCCATTTATAGTCAAATATAGGATAGGCTCTTCACATTTACCATTCGAAACTAACACGTGTCTTGTCGGAGATTTTCCTTTTTGGCAAAAAGGGAGTTGGATACCATATGATGAGCTCACACATAACCTATAAATCGGACTCTATTAGAGCAATGATGTAAGTCTGCGCATCTGTTTCCTGGAAATTTGTTAACCCTTGTTTAGTTATTGCAAATTACAGTGTCTCTGTGGTGCCATGAGTTGTGAAGGTGTTTCTAGTGTATCCATTAGAAAAAGAACAGAGGATGCTTATTATGCGCACAATGTCATGACTCTGCTTGTAATTGTTGAAGCTACAGACTAATAACTGGGTTGCTCAGACATATCAGTTTGAAAATACCAACTTAAGTTGTTGGTGCCCCATTCATAATGTTAGAAAAATAGGAAGAGTTAGAGATAAACAATATATTAAGCGAATTTTCTAGTCTGTTAGTGCCATTTTGAGCTGGTAGGAAGACTACTAATTATTTATTTTATGTTTGAAAAATGAAAGGTGAGAAAACTATGACTTATGAGAGAGTTGTTGCTCTATTGAGTCAATTTGGAGGAAAGTTTATCCTTGTTCTTTTAGATACTTCCCTTTATATGATAAATAGAAAATGAAATTCCTATGCGACTACATTACTGCAAAATCTATGTTTGAATGTTTGGAACATCACCCATATGATTTTTGTATTGAAGAACTATTGACTAACATGTAGCTGTCCTCGTCCTTGCAGGTCACCTCGTAGTCATCGTTCTAGAAGTCCCAGGAGGAGATTCTAGTTCTATGCACACACCTATTTGCAAGGATTATGTCACTGACTTCTAGAGATCAGGCTCTATGAATTCCTGGTCTATGCTGTACGATTGTTCCTTTGCCAGTTTTTCTTTAATTTTCTGTTCCCTTAACTCTGCTCTAAGTGAATGTATCTCGAGCTTGCCTGGCCTTTGTGAAAATTTAGATTCCTTTTATGAATATTTCAGAACTTTCCGGTTATCTTTTGAATTGGTTATGTTGGAGGCGGCATTGTGAGTTGATTGTCATGTAACATTTGTGGGTAATTTGATGTGTTTCAGTAGTGTGTACTAGCGATTTACCTTTTGAGTACATTTCCTTTAGCAGAAAGATTGAATATGTTTTGTGGAATTCATGACTTGAGAATAGCGAGTGGCACTGAAATTATAAAAACGAACAGTGGTAATTGAGAAGTTATGGTAAAAGGTGCTGACGATATATAATATAATATTATAAATGATGAGCATATGGTAATAATGACTTTTTTTCTCTCTTTGATGTAATTCATAATTACCTCGGGAAAAATAAATTTATATCACGTTGGGGTTTGACCATTAAAAAGACAAAAAAGCAAAGCAAGTGCACGATGACGTCTGGTGGGTTTGGTGTGGTTGAGGCAATTATTTTACTCTTTATCACTTTAACTATAGCCAAATTTTCCCCGTTAATCACATTTTAAAATTAAATAATATACCTTATTTAACTAATTATATTAAAGATTTTTCAAATATATTTTAATAATAGTATTAAATGAACTATATATAATAGAATATTCTTGATTTTTAAAATTAAAGATCTATATTTAATATAGGGTTTAAGTAATATAAACATAGGAAGGATAAGAAAATCGCTATATGGTGTTTCTTGAATAATAGAGACGGAAGTGTTCAAAGTCATATAAAGAATTATTATTGATAAAATAAAATTAAAATATTCACTATTTGTTCACTTTGATATTCTTGATATAAATTTATTACAACTATAATCATTTATTTACAATAAATAAATTAATATAAAAACCATTTTTTTTTTATTATAAAAACATAGTAAGAAAAAGTTAAACTCAATTCAATTTGTTGTTAAATATGATTAAAAACATTTGAACGCCGAGAGCGAAGTTTTGTTTTTTCAAGAACATAGATAACTCAACTCTGTGCGTGTGAGAGAGAGTTTTCCTACTCTACCGTGTCTGACTTGGGGGGTCTCTTTGCTTACTTCTTTGCCATTATTCTTGACCCAGCTTCCCCTTCCCTACTTTCTAACTCTCGAAAAATCCAACATCCATTAAGCAAAAAAAGCTACTAATCACTTGTATTACCCTTTTTTTCTCCCTTAATCAAGTGTATTTTGTTCTTCTTGAAAAAGGGGTTATTAGAATCTGTTGTGTCTTTGTTCAGATCCAAGTTATCATCTTTTTTGTTACCACTCTTTGTATCTTACTTGGTAAGCTTGCTTTGCCGCTTCATTATACAGCTGTTTCATGTGTTTTTATTCAGTATGTGACTGTGTCGGTCTCTTTTTCTTGTTTTCTTGCTGACTGATGAGGTAAAGTTGTGATCTTTTAGACCCTTCTAGCGTGTTTTGACTTACTTCTTTATAGTTCATGTTATAGAGGTGGATCTTGGATTTTTGTAGTAGTAGTCTCCTGCTTATTTGTGGAAGTGAGTGCAAACTTAATATATTTTACATTATATGTAGTTCAAGTTGAGAACAGTGGATTCCCTGTAGTGTTCTATGAGCTTTGGTGTTTCTTGTGGAAACATGCTGGTGGTATTTGATATCTTTTGCTAATAATATTGTACATTCTCCCATCTGGATGCCATTAAGTATTATGTATATCCTGCAAATTGGGTTTTTGCATTGCTTGTTTGTTGTTAATTTATTGAGATATAGAGGCACGCTTTTTTGATATTCTGTTCTTTGTGTTTGTGTCAGTTGAATTAGATCGTACCTATGCTCAGAGTTGATTGTTAATTTAATCATGCAGCTGAGCTCGAGGATCTGCTTGGTTTAGCTTAGACACATCTGAGAGGAGATTGTCAATCGGCTTTCTTGATATCGGTCCTCTGCTGCAGAAGTTTCTCAAGGCATTTATAGACTTTTGACTCAAATGTTGATGGAAGTTCGAGATTGAAGTAGGTTGAAGCATTATACGATAATGGGTGGCCTTTGCTCTAGAAGAGCCACCAGTGAGAATACAACAGGTCGTTCCATACCACATGTCAATGGTCACTTCAACTATGGTGCCGGAACAGTTTATCAGTCGCATAGATTGCCCCCACAGGCAAATAATGATTCTATGCAATCTCCACTGGGGGAAAGCACGGAGAATCAACCAAGTGAACCAGTGTTCTCTTTTCCAGAGTTGAATGCAGCTTCCCATGGGGTTGAAATGGATGCTATCAATGATGGAATTCCTCGATTGTCTAGGGCTTTATCAAATAAAACCAGACCAACAAGGTCAAAGCAAGTTGCCATGGCAAAGGTGAATAGTCTCCTATTCATTGTTCTTTCCTTTGTCCTATGGCTGATGCTTCTGTCTTTTTCCTATTGCATATGTGATTATGTAAAGTATTTCCATTTCACTGTCTTGACAATGGCCAAATGTAAGATAGGTTGTAAAAAATGAAGATACATCTACGAGTGAATAATTAATAAATAAAAAAAAAGAAATCAGATGAATAATTAAAAGGCAAACAAAGAGAAAAAAAAAC</genome_strand>
        <mrna_strand>GGGCATTCAGCAAAGGTCCTTTTAGAAGGAGAAATGTTAGGAGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACCTCGTAGTCATCGTTCTAGAAGTCCCAGGAGGAGATTCTAGTTCTATGCACACACCTATTTGCAAGGATTATGTCACTGACTTCTAGAGATCAGGCTCTATGAATTCCTGGTCTATGCTGTACGATTGTTCCTTTGCCAGTTTTTCTTTAATTTTCTGTTCCCTTAACTCTGCTCTAAGTGAATGTATCTCGAGCTTGCCTGGCCTTTGTGAAAATTTAGATTCCTTTTATGAATATTTCAGAACTTTCCGGTTATCTTTTGAATTGGTTATGTTGGAGGCGGCATTGTGAGTTGATTGTCATGTAACATTTGTGGGTAATTTGATGTGTTTCCGTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729852" ref_strand="+" ref_description="SGN-E729852 [LA22BC04]">
      <seq>gaggtaataaataaatatatacagttgaaacaagcgaatcaaaaccccagattctctctttttgctgcagcggcgaaaatggcgaacccggaggaggctgtggatttcgagccagaggaagacgatctgatggacgaagacgttgacgcttcatcacctagggcaccgatgccaaagctgaaatcagccattacaggtggcggcggcggttcttctgcttctaagaaaatcaaaggacggggtttccgtgaagagactgctgaggctgaaaggaatgctcgcctttctgctcgatttgattcacttgactccgaaggtggccctggacctgaacgatccattgaaggatggattattttagtcactggagtcaatgaggaggcacacgaagatgatcttcataatatatttggtgagttcggggagatcaagaatttgcatttgaatctggatcgtcgttctggatttgtcaagggttatgcacttattgaatatgaaaactttgaagaagcagagagagctattagtgaaatggatgggaatgagctgctaactcagactatacatgttgattgggcattcagcaaaggtccttttagaaggagaaatgttaggaggaggtcacctcgtagtcatcgttctagaagtcccaggaggagattctagttctatgcacacacctatttgcaaggattatgtcactgacttctagagatcaggctctatgaattcctggtctatgctgtacgattgttcctttgccagtttttctttaattttctgntccccttaactctgctctaagtgaatgtatctcgagcttgcctggcctttgtgaaaatttaaatcccttttatgaatatttcagaactttccggttatcttttgaattggttatggtggaggccggattgtgagttgattgtcatgtnacctttggggggaatttgatgggtttccgaaaggtggactaccgatttaccttttgagtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80595" stop="75165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80299" g_stop="79963" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79962" i_stop="78412" i_length="1551">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.156" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78411" g_stop="78275" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="474" r_length="137" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78274" i_stop="77885" i_length="390">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77884" g_stop="77739" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="620" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77738" i_stop="75838" i_length="1901">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75837" g_stop="75466" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="993" r_length="373" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E729852" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>992</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80299" e_stop="79963"/>
          <exon e_start="78411" e_stop="78275"/>
          <exon e_start="77884" e_stop="77739"/>
          <exon e_start="75837" e_stop="75466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACTAATAAATAAATATATACAGTTGAAACAAGCGAATCAAAACCCCAGATTCTCTCTTTTTGCTGCAGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTGGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCACCGATGCCAAAGCTGAAATCAGCCATTACAGGTGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGGGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGATTTGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGATGTTAGTTTCTACTCTTAACTCATCTTTTATATAACCCAACGAACTTTCTACCTCATTTTTTTCTTTTTTTTTTTAGAATTTTGTTCAAATTAGGGGAAAATGTTGCAGTGGGTCAACAATTCATCAAAACCCCAGATTCTCTCTTTGTGCGCTGGTGTTAAAGAATTGTTACCTATAATTGTTTTCTCTATGATTTTGTGACGGGAGGTTGATAGTTGGGGTAATGGGTAAAGTGTCTTAAGGAAATGTTTTAGTCTGGTTAGAGACTTCTAATTAAGAGAATATCTAGGTTTAGGATGTCTTAATTTTAACAGGTTAAAAATTGCTTATTCTTATAATTGTTTTTCTTTTGGTTTTTGTGTTATGAATAAAGAAAACTGCTACAGGTTGGTAATCCGCGTAATGTAATGACCCTCGAAGGAGTGTGTTTAGTTTGGTTTACAGTGTTGAATCTAGAGAACATCTAACTTTAGAAGACTAACATTGAACACTCAAGTGTTGACCCTGTTATCTTTAGAGTTTTTTCACGAGGTGCTTTTATGGTTTTATTGAGTGTATTTAGTATACTTTCTAGTTTTGGTTTAATTTGTTATCTGTTATTGATTAGTTGAACGATATTAAATTGCTTTTGTGAATGAGACCATGTTAAGGTTTCACCTACATTGTATAAGCAAGCAGAATTAGAGAAGTGAATAAAGAAGTTAGGACCTACTGCTAGTAGAAGTTGATTTTGTTCATCTGTGTGAAGAAAAGCAACTAGAGAAAGGAACACTCAAATATTGCTTGTACTCATCTTCAAGTTGTTAGGACCCTGTAACGGTATCTAGAAAGTGGAATAACTTGAAGATAATTAAGTCGAGGTCTTTTTTTGTCAAAAAAAATAATTAAGTTGAGGTCTTCATTTTCAGAAAGAGTGGAAAGATCGTGAAATAGGGTAAAATGTTTGTACTTAATGTATATCTGTGCTGTTTGGTCCCCTCCTCTAGCCATTGTGCTTATAAGCCTCCGCCCTCCAGCTTCGTGTTCTTTACATTATAAATGTGCTAACCAGTTGGATTGGGTTCCAGCTATTACTTTATTTACATCTAAGAAGCACGTAATGGTAGGCTGTATATTTGTCACTTTATCATTGTTGCTTAGCTTTTAGAGAGAGCTAGCTTTGTATAGCTAATGCAACTTACCCTCCAACGGCTCAGCTTGGTCTTCAGCACTTGCTGTCGGAGAAATTGGCCAACAGAATCTAATATGCTGATTTCAGTCGTAGATATTAGTTGTTTGATTGCTGGGTCACCAGCACTTCAAGTAATATGTAATTTGTGCTGGGTATCTCAGATATTTTTCAAGTTATGCAATTCTAATGTAATAAAAATCCCAAAATGTCTGATAGGTGCTGATTCAGACATGCATGGTGTCCCCCCCCCCCCCCCCCTCTTTTTTTTTTTTTTCTTTTCTTCAATATATATATATATATATATATTTGAAGTTACCGGTAAGGTTAATAAAGGTTTAGTTTAATTAGTAGTAGAGAGCTAATGAGGGGAACATCTGCAGCCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTCTGGATTTGTCAAGGTGAACTGACTCTTTCTTTCTCGGAATGTTTAGCTGCTTGCCTGCTTCTTTGGGTTTTGGGTGTTGTACATATGATGCTATATGAATTGCATCCCCATTGTATGCTTTAATCTAATAAACTTTCCTATCAAAAGATTTTGGATGATGACAAAATTCTTTTGATCAAGAAAAATTTGTTGAAGTTTATAAGTGACAGACATTCCTTCTTCCATATAACTATGTAAGAGCATTTCCTTGAATGAATCTGTAATGGAGTAAAATGGAATAAAATAGGATCAATGCTATGTTAATTATGAAGGATTCTAGATAGATACTTTTCTTTGTTTTAAGTTTCAACTTTTGTCGTAGTTTGGAGTGGTATAGTTTTTATACAGTTTTCCATTTTGACAGGGTTATGCACTTATTGAATATGAAAACTTTGAAGAAGCAGAGAGAGCTATTAGTGAAATGGATGGGAATGAGCTGCTAACTCAGACTATACATGTTGATTGGGCATTCAGCAAAGGTCCTTTTAGAAGGAGAAATGTTAGGAGGAGGTATTTTTCTTGGTTAATCCAATTAACATAATTTTGTGTAGAATAGCTGTGAAAAAATGTTGCCTGAATCAAGGATACACTTTTTCACTTTTAATCAATGTTGGCAAATGTTCCTTCAGAAGCATAGATTTACCCTCTTGACAAAAAGTCGGGGCCTTCAAATTATTTTCAGAGATTGGAATAGCTACTTCTTAAACATTTGCAACTGGATTAATGTTATGACGTCTGTAATTGTTTTCTTGCGAACTGTTTCACTATAATATATGTCGTTTATTGTATTGCCTTCAACTCCGTAGGAGTGGAATTGTCACTGGCCTCCCTCATGTTTTTGTTGATAAAAGTTACCAGCCCATTTCCTGTAATTCATGATTCAGCTGTCAGTTATGTGTGTGTGGGATCAATAATAACCACCTATTACTAAGACTCCCTTTTATTTAAACGTCTGGCAGCTGAATAGCCTGTGGATCAATATTATCTTAAATTTTTGCCTCATCTTTTATTCTTTTACGTTATAGTAGTTTTTTAATTCTATCAAAGCATTTCTCTGTGGAGGTGATGGACAGTGTATCCTTCAGTCGCTTAAATTCTCTTTTTTGCTCCCTGTTTTCTGAGGGTATGCATAATTGTTTGATTTATTTCCTTTTGCTGTTAATCTAGTTTCGGCCAAATCCCAGCTGAGATCATTGAATTAGGTTTCCTATTGATCATATTGTAGGCAAAAATTGATAACTTATCCCTCAATACATAGCTAGAAAAGTTCCAAATTGTTTAGCAGAAGTTTGAGTAGGATTAGCTCAATGATAAATACCAGTTCTCTGCAGCCTTATTTAGTAGACTAACTGCAAATTCTTATCAGACTTCTCTTCGGGTTTATTTGTCAAGTTTGCCAGCAATTAGAGAGCTGATTGTTTTGCAATATACATATGATTGCTATGGTTGTATGAAAATGTGTAGTGGTGGATTAGGTTTTCCTAACATCATTATGGTCACAATGATTGTCTGAAGATTTATGCATTTCTCACTCTCCCATGGATAGGTGTCCCCAGAGCAGTTTGGGCTTTTATTTAGCTTTTGGAGAGGGGTGCAAAGGTGGTGGAATTGATGCAAAAGACACTAGGAATGTGTCTGTGTGGGGTATGGGTTGCCATTTATAGTCAAATATAGGATAGGCTCTTCACATTTACCATTCGAAACTAACACGTGTCTTGTCGGAGATTTTCCTTTTTGGCAAAAAGGGAGTTGGATACCATATGATGAGCTCACACATAACCTATAAATCGGACTCTATTAGAGCAATGATGTAAGTCTGCGCATCTGTTTCCTGGAAATTTGTTAACCCTTGTTTAGTTATTGCAAATTACAGTGTCTCTGTGGTGCCATGAGTTGTGAAGGTGTTTCTAGTGTATCCATTAGAAAAAGAACAGAGGATGCTTATTATGCGCACAATGTCATGACTCTGCTTGTAATTGTTGAAGCTACAGACTAATAACTGGGTTGCTCAGACATATCAGTTTGAAAATACCAACTTAAGTTGTTGGTGCCCCATTCATAATGTTAGAAAAATAGGAAGAGTTAGAGATAAACAATATATTAAGCGAATTTTCTAGTCTGTTAGTGCCATTTTGAGCTGGTAGGAAGACTACTAATTATTTATTTTATGTTTGAAAAATGAAAGGTGAGAAAACTATGACTTATGAGAGAGTTGTTGCTCTATTGAGTCAATTTGGAGGAAAGTTTATCCTTGTTCTTTTAGATACTTCCCTTTATATGATAAATAGAAAATGAAATTCCTATGCGACTACATTACTGCAAAATCTATGTTTGAATGTTTGGAACATCACCCATATGATTTTTGTATTGAAGAACTATTGACTAACATGTAGCTGTCCTCGTCCTTGCAGGTCACCTCGTAGTCATCGTTCTAGAAGTCCCAGGAGGAGATTCTAGTTCTATGCACACACCTATTTGCAAGGATTATGTCACTGACTTCTAGAGATCAGGCTCTATGAATTCCTGGTCTATGCTGTACGATTGTTCCTTTGCCAGTTTTTCTTTAATTTTCTGTT-CCCTTAACTCTGCTCTAAGTGAATGTATCTCGAGCTTGCCTGGCCTTTGTGAAAATTTAGATTCCTTTTATGAATATTTCAGAACTTTCCGGTTATCTTTTGAATTGGTTATGTTGGAGGCGGCATTGTGAGTTGATTGTCATGTAACATTTGTGGGTAATTTGATGTGTTTCAGTAGTGTGTACTAGCGATTTACCTTTTGAGTAC</genome_strand>
        <mrna_strand>GAGGTAATAAATAAATATATACAGTTGAAACAAGCGAATCAAAACCCCAGATTCTCTCTTTTTGCTGCAGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTGGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCACCGATGCCAAAGCTGAAATCAGCCATTACAGGTGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGGGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGATTTGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATATATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTCTGGATTTGTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................GGTTATGCACTTATTGAATATGAAAACTTTGAAGAAGCAGAGAGAGCTATTAGTGAAATGGATGGGAATGAGCTGCTAACTCAGACTATACATGTTGATTGGGCATTCAGCAAAGGTCCTTTTAGAAGGAGAAATGTTAGGAGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACCTCGTAGTCATCGTTCTAGAAGTCCCAGGAGGAGATTCTAGTTCTATGCACACACCTATTTGCAAGGATTATGTCACTGACTTCTAGAGATCAGGCTCTATGAATTCCTGGTCTATGCTGTACGATTGTTCCTTTGCCAGTTTTTCTTTAATTTTCTGNTCCCCTTAACTCTGCTCTAAGTGAATGTATCTCGAGCTTGCCTGGCCTTTGTGAAAATTTAAATCCCTTTTATGAATATTTCAGAACTTTCCGGTTATCTTTTGAATTGGTTATGGTGGAGGCCGGATTGTGAGTTGATTGTCATGTNACCTTTGGGGGGAATTTGATGGGTTTCCGAAAGGTGGACTACCGATTTACCTTTTGAGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731581" ref_strand="+" ref_description="SGN-E731581 [LA27CC08]">
      <seq>aggctctttttgctgcagcggcgaaaatggcgaacccggaggaggctgtggatttcgagccagaggaagacgatctgatggacgaagacgttgacgcttcatcacctagggcaccgatgccaaagctgaaatcagccattacaggtggcggcggcggttcttctgcttctaagaaaatcaaaggacggggtttccgtgaagagactgctgaggctgaaaggaatgctcgcctttctgctcgatttgattcacttgactccgaaggtggccctggacctgaacgatccattgaaggatggattattttagtcactggagtcaatgaggaggcacacgaagatgatcttcataatacatttggtgagttcggggagatcaagaatttgcatttgaatctggatcgtcgttctggatttgtcaagggttatgcacttattgaatatgaaaactttgaagaagcagagagagctattagtgaaatggatgggaatgagctgctaactcagactatacatgttgattgggcattcagcaaaggtccttttagaaggagaaatgttaggaggaggtcacctcgtagtcatcgttctagaagtcccaggaggagattctagttctatgcacacacctatttgcaaggattatgtcactgacttctagagatcaggctctatgaattcctggtctatgctgtacgattgttcctttgccagtttttctttaattttctgttcccttaactctgctctaagtgaatgtatctcgagcttgcctggcctttgtgaaaatttagattccttttatgaatatttcagaactttccggttatcttttgaattggttatgttggaggcggcattgtgagttgattgtcatgtaacatttgtggggtatttgatgtgtttccgtagggtgtactaacgatttaccttttgagtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80544" stop="75165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80247" g_stop="79963" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79962" i_stop="78412" i_length="1551">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.156" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78411" g_stop="78275" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="422" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78274" i_stop="77885" i_length="390">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77884" g_stop="77739" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="568" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77738" i_stop="75838" i_length="1901">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75837" g_stop="75466" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="940" r_length="372" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="941" polyA_stop="950"/>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E731581" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>940</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80247" e_stop="79963"/>
          <exon e_start="78411" e_stop="78275"/>
          <exon e_start="77884" e_stop="77739"/>
          <exon e_start="75837" e_stop="75466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTTTTTGCTGCAGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTGGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCACCGATGCCAAAGCTGAAATCAGCCATTACAGGTGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGGGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGATTTGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGATGTTAGTTTCTACTCTTAACTCATCTTTTATATAACCCAACGAACTTTCTACCTCATTTTTTTCTTTTTTTTTTTAGAATTTTGTTCAAATTAGGGGAAAATGTTGCAGTGGGTCAACAATTCATCAAAACCCCAGATTCTCTCTTTGTGCGCTGGTGTTAAAGAATTGTTACCTATAATTGTTTTCTCTATGATTTTGTGACGGGAGGTTGATAGTTGGGGTAATGGGTAAAGTGTCTTAAGGAAATGTTTTAGTCTGGTTAGAGACTTCTAATTAAGAGAATATCTAGGTTTAGGATGTCTTAATTTTAACAGGTTAAAAATTGCTTATTCTTATAATTGTTTTTCTTTTGGTTTTTGTGTTATGAATAAAGAAAACTGCTACAGGTTGGTAATCCGCGTAATGTAATGACCCTCGAAGGAGTGTGTTTAGTTTGGTTTACAGTGTTGAATCTAGAGAACATCTAACTTTAGAAGACTAACATTGAACACTCAAGTGTTGACCCTGTTATCTTTAGAGTTTTTTCACGAGGTGCTTTTATGGTTTTATTGAGTGTATTTAGTATACTTTCTAGTTTTGGTTTAATTTGTTATCTGTTATTGATTAGTTGAACGATATTAAATTGCTTTTGTGAATGAGACCATGTTAAGGTTTCACCTACATTGTATAAGCAAGCAGAATTAGAGAAGTGAATAAAGAAGTTAGGACCTACTGCTAGTAGAAGTTGATTTTGTTCATCTGTGTGAAGAAAAGCAACTAGAGAAAGGAACACTCAAATATTGCTTGTACTCATCTTCAAGTTGTTAGGACCCTGTAACGGTATCTAGAAAGTGGAATAACTTGAAGATAATTAAGTCGAGGTCTTTTTTTGTCAAAAAAAATAATTAAGTTGAGGTCTTCATTTTCAGAAAGAGTGGAAAGATCGTGAAATAGGGTAAAATGTTTGTACTTAATGTATATCTGTGCTGTTTGGTCCCCTCCTCTAGCCATTGTGCTTATAAGCCTCCGCCCTCCAGCTTCGTGTTCTTTACATTATAAATGTGCTAACCAGTTGGATTGGGTTCCAGCTATTACTTTATTTACATCTAAGAAGCACGTAATGGTAGGCTGTATATTTGTCACTTTATCATTGTTGCTTAGCTTTTAGAGAGAGCTAGCTTTGTATAGCTAATGCAACTTACCCTCCAACGGCTCAGCTTGGTCTTCAGCACTTGCTGTCGGAGAAATTGGCCAACAGAATCTAATATGCTGATTTCAGTCGTAGATATTAGTTGTTTGATTGCTGGGTCACCAGCACTTCAAGTAATATGTAATTTGTGCTGGGTATCTCAGATATTTTTCAAGTTATGCAATTCTAATGTAATAAAAATCCCAAAATGTCTGATAGGTGCTGATTCAGACATGCATGGTGTCCCCCCCCCCCCCCCCCTCTTTTTTTTTTTTTTCTTTTCTTCAATATATATATATATATATATATTTGAAGTTACCGGTAAGGTTAATAAAGGTTTAGTTTAATTAGTAGTAGAGAGCTAATGAGGGGAACATCTGCAGCCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTCTGGATTTGTCAAGGTGAACTGACTCTTTCTTTCTCGGAATGTTTAGCTGCTTGCCTGCTTCTTTGGGTTTTGGGTGTTGTACATATGATGCTATATGAATTGCATCCCCATTGTATGCTTTAATCTAATAAACTTTCCTATCAAAAGATTTTGGATGATGACAAAATTCTTTTGATCAAGAAAAATTTGTTGAAGTTTATAAGTGACAGACATTCCTTCTTCCATATAACTATGTAAGAGCATTTCCTTGAATGAATCTGTAATGGAGTAAAATGGAATAAAATAGGATCAATGCTATGTTAATTATGAAGGATTCTAGATAGATACTTTTCTTTGTTTTAAGTTTCAACTTTTGTCGTAGTTTGGAGTGGTATAGTTTTTATACAGTTTTCCATTTTGACAGGGTTATGCACTTATTGAATATGAAAACTTTGAAGAAGCAGAGAGAGCTATTAGTGAAATGGATGGGAATGAGCTGCTAACTCAGACTATACATGTTGATTGGGCATTCAGCAAAGGTCCTTTTAGAAGGAGAAATGTTAGGAGGAGGTATTTTTCTTGGTTAATCCAATTAACATAATTTTGTGTAGAATAGCTGTGAAAAAATGTTGCCTGAATCAAGGATACACTTTTTCACTTTTAATCAATGTTGGCAAATGTTCCTTCAGAAGCATAGATTTACCCTCTTGACAAAAAGTCGGGGCCTTCAAATTATTTTCAGAGATTGGAATAGCTACTTCTTAAACATTTGCAACTGGATTAATGTTATGACGTCTGTAATTGTTTTCTTGCGAACTGTTTCACTATAATATATGTCGTTTATTGTATTGCCTTCAACTCCGTAGGAGTGGAATTGTCACTGGCCTCCCTCATGTTTTTGTTGATAAAAGTTACCAGCCCATTTCCTGTAATTCATGATTCAGCTGTCAGTTATGTGTGTGTGGGATCAATAATAACCACCTATTACTAAGACTCCCTTTTATTTAAACGTCTGGCAGCTGAATAGCCTGTGGATCAATATTATCTTAAATTTTTGCCTCATCTTTTATTCTTTTACGTTATAGTAGTTTTTTAATTCTATCAAAGCATTTCTCTGTGGAGGTGATGGACAGTGTATCCTTCAGTCGCTTAAATTCTCTTTTTTGCTCCCTGTTTTCTGAGGGTATGCATAATTGTTTGATTTATTTCCTTTTGCTGTTAATCTAGTTTCGGCCAAATCCCAGCTGAGATCATTGAATTAGGTTTCCTATTGATCATATTGTAGGCAAAAATTGATAACTTATCCCTCAATACATAGCTAGAAAAGTTCCAAATTGTTTAGCAGAAGTTTGAGTAGGATTAGCTCAATGATAAATACCAGTTCTCTGCAGCCTTATTTAGTAGACTAACTGCAAATTCTTATCAGACTTCTCTTCGGGTTTATTTGTCAAGTTTGCCAGCAATTAGAGAGCTGATTGTTTTGCAATATACATATGATTGCTATGGTTGTATGAAAATGTGTAGTGGTGGATTAGGTTTTCCTAACATCATTATGGTCACAATGATTGTCTGAAGATTTATGCATTTCTCACTCTCCCATGGATAGGTGTCCCCAGAGCAGTTTGGGCTTTTATTTAGCTTTTGGAGAGGGGTGCAAAGGTGGTGGAATTGATGCAAAAGACACTAGGAATGTGTCTGTGTGGGGTATGGGTTGCCATTTATAGTCAAATATAGGATAGGCTCTTCACATTTACCATTCGAAACTAACACGTGTCTTGTCGGAGATTTTCCTTTTTGGCAAAAAGGGAGTTGGATACCATATGATGAGCTCACACATAACCTATAAATCGGACTCTATTAGAGCAATGATGTAAGTCTGCGCATCTGTTTCCTGGAAATTTGTTAACCCTTGTTTAGTTATTGCAAATTACAGTGTCTCTGTGGTGCCATGAGTTGTGAAGGTGTTTCTAGTGTATCCATTAGAAAAAGAACAGAGGATGCTTATTATGCGCACAATGTCATGACTCTGCTTGTAATTGTTGAAGCTACAGACTAATAACTGGGTTGCTCAGACATATCAGTTTGAAAATACCAACTTAAGTTGTTGGTGCCCCATTCATAATGTTAGAAAAATAGGAAGAGTTAGAGATAAACAATATATTAAGCGAATTTTCTAGTCTGTTAGTGCCATTTTGAGCTGGTAGGAAGACTACTAATTATTTATTTTATGTTTGAAAAATGAAAGGTGAGAAAACTATGACTTATGAGAGAGTTGTTGCTCTATTGAGTCAATTTGGAGGAAAGTTTATCCTTGTTCTTTTAGATACTTCCCTTTATATGATAAATAGAAAATGAAATTCCTATGCGACTACATTACTGCAAAATCTATGTTTGAATGTTTGGAACATCACCCATATGATTTTTGTATTGAAGAACTATTGACTAACATGTAGCTGTCCTCGTCCTTGCAGGTCACCTCGTAGTCATCGTTCTAGAAGTCCCAGGAGGAGATTCTAGTTCTATGCACACACCTATTTGCAAGGATTATGTCACTGACTTCTAGAGATCAGGCTCTATGAATTCCTGGTCTATGCTGTACGATTGTTCCTTTGCCAGTTTTTCTTTAATTTTCTGTTCCCTTAACTCTGCTCTAAGTGAATGTATCTCGAGCTTGCCTGGCCTTTGTGAAAATTTAGATTCCTTTTATGAATATTTCAGAACTTTCCGGTTATCTTTTGAATTGGTTATGTTGGAGGCGGCATTGTGAGTTGATTGTCATGTAACATTTGTGGGTAATTTGATGTGTTTCAGTAGTGTGTACTAGCGATTTACCTTTTGAGTAC</genome_strand>
        <mrna_strand>AGGCTCTTTTTGCTGCAGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTGGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCACCGATGCCAAAGCTGAAATCAGCCATTACAGGTGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGGGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGATTTGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTCTGGATTTGTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................GGTTATGCACTTATTGAATATGAAAACTTTGAAGAAGCAGAGAGAGCTATTAGTGAAATGGATGGGAATGAGCTGCTAACTCAGACTATACATGTTGATTGGGCATTCAGCAAAGGTCCTTTTAGAAGGAGAAATGTTAGGAGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACCTCGTAGTCATCGTTCTAGAAGTCCCAGGAGGAGATTCTAGTTCTATGCACACACCTATTTGCAAGGATTATGTCACTGACTTCTAGAGATCAGGCTCTATGAATTCCTGGTCTATGCTGTACGATTGTTCCTTTGCCAGTTTTTCTTTAATTTTCTGTTCCCTTAACTCTGCTCTAAGTGAATGTATCTCGAGCTTGCCTGGCCTTTGTGAAAATTTAGATTCCTTTTATGAATATTTCAGAACTTTCCGGTTATCTTTTGAATTGGTTATGTTGGAGGCGGCATTGTGAGTTGATTGTCATGTAACATTTGTGGGGTATTTGATGTGTTTCCGTAGGGTGTACTAACGATTTACCTTTTGAGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731661" ref_strand="+" ref_description="SGN-E731661 [LA27DC08]">
      <seq>aggctctttttgctgcagcggcgaaaatggcgaacccggaggaggctgtggatttcgagccagaggaagacgatctgatggacgaagacgttgacgcttcatcacctagggcaccgatgccaaagctgaaatcagccattacaggtggcggcggcggttcttctgcttctaagaaaatcaaaggacggggtttccgtgaagagactgctgaggctgaaaggaatgctcgcctttctgctcgatttgattcacttgactccgaaggtggccctggacctgaacgatccattgaaggatggattattttagtcactggagtcaatgaggaggcacacgaagatgatcttcataatacatttggtgagttcggggagatcaagaatttgcatttgaatctggatcgtcgttctggatttgtcaagggttatgcacttattgaatatgaaaactttgaagaagcagagagagctattagtgaaatggatgggaatgagctgctaactcagactatacatgttgattgggcattcagcaaaggtccttttagaaggagaaatgttaggaggaggtcacctcgtagtcatcgttctagaagtcccaggaggagattctagttctatgcacacacctatttgcaaggattatgtcactgacttctagagatcaggctctatgaattcctggtctatgctgtacgattgttcctttgccagtttttctttaattttctgttcccttaactctgctctaagtgaatgtatctcgagcttgcctggcctttgtgaaaatttagattccttttatgaatatttcagaactttccggntatcttttgaaatggttatgttggaggcggcattgtgagttgattgtcatgtaacatttgtggggtatttgatgtgtttcagtagtgtgtactaacgatttaccttttgagtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80544" stop="75165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80247" g_stop="79963" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79962" i_stop="78412" i_length="1551">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.156" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78411" g_stop="78275" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="422" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78274" i_stop="77885" i_length="390">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77884" g_stop="77739" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="568" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77738" i_stop="75838" i_length="1901">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75837" g_stop="75466" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="940" r_length="372" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="941" polyA_stop="951"/>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E731661" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>940</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80247" e_stop="79963"/>
          <exon e_start="78411" e_stop="78275"/>
          <exon e_start="77884" e_stop="77739"/>
          <exon e_start="75837" e_stop="75466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTTTTTGCTGCAGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTGGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCACCGATGCCAAAGCTGAAATCAGCCATTACAGGTGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGGGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGATTTGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGATGTTAGTTTCTACTCTTAACTCATCTTTTATATAACCCAACGAACTTTCTACCTCATTTTTTTCTTTTTTTTTTTAGAATTTTGTTCAAATTAGGGGAAAATGTTGCAGTGGGTCAACAATTCATCAAAACCCCAGATTCTCTCTTTGTGCGCTGGTGTTAAAGAATTGTTACCTATAATTGTTTTCTCTATGATTTTGTGACGGGAGGTTGATAGTTGGGGTAATGGGTAAAGTGTCTTAAGGAAATGTTTTAGTCTGGTTAGAGACTTCTAATTAAGAGAATATCTAGGTTTAGGATGTCTTAATTTTAACAGGTTAAAAATTGCTTATTCTTATAATTGTTTTTCTTTTGGTTTTTGTGTTATGAATAAAGAAAACTGCTACAGGTTGGTAATCCGCGTAATGTAATGACCCTCGAAGGAGTGTGTTTAGTTTGGTTTACAGTGTTGAATCTAGAGAACATCTAACTTTAGAAGACTAACATTGAACACTCAAGTGTTGACCCTGTTATCTTTAGAGTTTTTTCACGAGGTGCTTTTATGGTTTTATTGAGTGTATTTAGTATACTTTCTAGTTTTGGTTTAATTTGTTATCTGTTATTGATTAGTTGAACGATATTAAATTGCTTTTGTGAATGAGACCATGTTAAGGTTTCACCTACATTGTATAAGCAAGCAGAATTAGAGAAGTGAATAAAGAAGTTAGGACCTACTGCTAGTAGAAGTTGATTTTGTTCATCTGTGTGAAGAAAAGCAACTAGAGAAAGGAACACTCAAATATTGCTTGTACTCATCTTCAAGTTGTTAGGACCCTGTAACGGTATCTAGAAAGTGGAATAACTTGAAGATAATTAAGTCGAGGTCTTTTTTTGTCAAAAAAAATAATTAAGTTGAGGTCTTCATTTTCAGAAAGAGTGGAAAGATCGTGAAATAGGGTAAAATGTTTGTACTTAATGTATATCTGTGCTGTTTGGTCCCCTCCTCTAGCCATTGTGCTTATAAGCCTCCGCCCTCCAGCTTCGTGTTCTTTACATTATAAATGTGCTAACCAGTTGGATTGGGTTCCAGCTATTACTTTATTTACATCTAAGAAGCACGTAATGGTAGGCTGTATATTTGTCACTTTATCATTGTTGCTTAGCTTTTAGAGAGAGCTAGCTTTGTATAGCTAATGCAACTTACCCTCCAACGGCTCAGCTTGGTCTTCAGCACTTGCTGTCGGAGAAATTGGCCAACAGAATCTAATATGCTGATTTCAGTCGTAGATATTAGTTGTTTGATTGCTGGGTCACCAGCACTTCAAGTAATATGTAATTTGTGCTGGGTATCTCAGATATTTTTCAAGTTATGCAATTCTAATGTAATAAAAATCCCAAAATGTCTGATAGGTGCTGATTCAGACATGCATGGTGTCCCCCCCCCCCCCCCCCTCTTTTTTTTTTTTTTCTTTTCTTCAATATATATATATATATATATATTTGAAGTTACCGGTAAGGTTAATAAAGGTTTAGTTTAATTAGTAGTAGAGAGCTAATGAGGGGAACATCTGCAGCCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTCTGGATTTGTCAAGGTGAACTGACTCTTTCTTTCTCGGAATGTTTAGCTGCTTGCCTGCTTCTTTGGGTTTTGGGTGTTGTACATATGATGCTATATGAATTGCATCCCCATTGTATGCTTTAATCTAATAAACTTTCCTATCAAAAGATTTTGGATGATGACAAAATTCTTTTGATCAAGAAAAATTTGTTGAAGTTTATAAGTGACAGACATTCCTTCTTCCATATAACTATGTAAGAGCATTTCCTTGAATGAATCTGTAATGGAGTAAAATGGAATAAAATAGGATCAATGCTATGTTAATTATGAAGGATTCTAGATAGATACTTTTCTTTGTTTTAAGTTTCAACTTTTGTCGTAGTTTGGAGTGGTATAGTTTTTATACAGTTTTCCATTTTGACAGGGTTATGCACTTATTGAATATGAAAACTTTGAAGAAGCAGAGAGAGCTATTAGTGAAATGGATGGGAATGAGCTGCTAACTCAGACTATACATGTTGATTGGGCATTCAGCAAAGGTCCTTTTAGAAGGAGAAATGTTAGGAGGAGGTATTTTTCTTGGTTAATCCAATTAACATAATTTTGTGTAGAATAGCTGTGAAAAAATGTTGCCTGAATCAAGGATACACTTTTTCACTTTTAATCAATGTTGGCAAATGTTCCTTCAGAAGCATAGATTTACCCTCTTGACAAAAAGTCGGGGCCTTCAAATTATTTTCAGAGATTGGAATAGCTACTTCTTAAACATTTGCAACTGGATTAATGTTATGACGTCTGTAATTGTTTTCTTGCGAACTGTTTCACTATAATATATGTCGTTTATTGTATTGCCTTCAACTCCGTAGGAGTGGAATTGTCACTGGCCTCCCTCATGTTTTTGTTGATAAAAGTTACCAGCCCATTTCCTGTAATTCATGATTCAGCTGTCAGTTATGTGTGTGTGGGATCAATAATAACCACCTATTACTAAGACTCCCTTTTATTTAAACGTCTGGCAGCTGAATAGCCTGTGGATCAATATTATCTTAAATTTTTGCCTCATCTTTTATTCTTTTACGTTATAGTAGTTTTTTAATTCTATCAAAGCATTTCTCTGTGGAGGTGATGGACAGTGTATCCTTCAGTCGCTTAAATTCTCTTTTTTGCTCCCTGTTTTCTGAGGGTATGCATAATTGTTTGATTTATTTCCTTTTGCTGTTAATCTAGTTTCGGCCAAATCCCAGCTGAGATCATTGAATTAGGTTTCCTATTGATCATATTGTAGGCAAAAATTGATAACTTATCCCTCAATACATAGCTAGAAAAGTTCCAAATTGTTTAGCAGAAGTTTGAGTAGGATTAGCTCAATGATAAATACCAGTTCTCTGCAGCCTTATTTAGTAGACTAACTGCAAATTCTTATCAGACTTCTCTTCGGGTTTATTTGTCAAGTTTGCCAGCAATTAGAGAGCTGATTGTTTTGCAATATACATATGATTGCTATGGTTGTATGAAAATGTGTAGTGGTGGATTAGGTTTTCCTAACATCATTATGGTCACAATGATTGTCTGAAGATTTATGCATTTCTCACTCTCCCATGGATAGGTGTCCCCAGAGCAGTTTGGGCTTTTATTTAGCTTTTGGAGAGGGGTGCAAAGGTGGTGGAATTGATGCAAAAGACACTAGGAATGTGTCTGTGTGGGGTATGGGTTGCCATTTATAGTCAAATATAGGATAGGCTCTTCACATTTACCATTCGAAACTAACACGTGTCTTGTCGGAGATTTTCCTTTTTGGCAAAAAGGGAGTTGGATACCATATGATGAGCTCACACATAACCTATAAATCGGACTCTATTAGAGCAATGATGTAAGTCTGCGCATCTGTTTCCTGGAAATTTGTTAACCCTTGTTTAGTTATTGCAAATTACAGTGTCTCTGTGGTGCCATGAGTTGTGAAGGTGTTTCTAGTGTATCCATTAGAAAAAGAACAGAGGATGCTTATTATGCGCACAATGTCATGACTCTGCTTGTAATTGTTGAAGCTACAGACTAATAACTGGGTTGCTCAGACATATCAGTTTGAAAATACCAACTTAAGTTGTTGGTGCCCCATTCATAATGTTAGAAAAATAGGAAGAGTTAGAGATAAACAATATATTAAGCGAATTTTCTAGTCTGTTAGTGCCATTTTGAGCTGGTAGGAAGACTACTAATTATTTATTTTATGTTTGAAAAATGAAAGGTGAGAAAACTATGACTTATGAGAGAGTTGTTGCTCTATTGAGTCAATTTGGAGGAAAGTTTATCCTTGTTCTTTTAGATACTTCCCTTTATATGATAAATAGAAAATGAAATTCCTATGCGACTACATTACTGCAAAATCTATGTTTGAATGTTTGGAACATCACCCATATGATTTTTGTATTGAAGAACTATTGACTAACATGTAGCTGTCCTCGTCCTTGCAGGTCACCTCGTAGTCATCGTTCTAGAAGTCCCAGGAGGAGATTCTAGTTCTATGCACACACCTATTTGCAAGGATTATGTCACTGACTTCTAGAGATCAGGCTCTATGAATTCCTGGTCTATGCTGTACGATTGTTCCTTTGCCAGTTTTTCTTTAATTTTCTGTTCCCTTAACTCTGCTCTAAGTGAATGTATCTCGAGCTTGCCTGGCCTTTGTGAAAATTTAGATTCCTTTTATGAATATTTCAGAACTTTCCGGTTATCTTTTGAATTGGTTATGTTGGAGGCGGCATTGTGAGTTGATTGTCATGTAACATTTGTGGGTAATTTGATGTGTTTCAGTAGTGTGTACTAGCGATTTACCTTTTGAGTAC</genome_strand>
        <mrna_strand>AGGCTCTTTTTGCTGCAGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTGGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCACCGATGCCAAAGCTGAAATCAGCCATTACAGGTGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGGGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGATTTGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTCTGGATTTGTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................GGTTATGCACTTATTGAATATGAAAACTTTGAAGAAGCAGAGAGAGCTATTAGTGAAATGGATGGGAATGAGCTGCTAACTCAGACTATACATGTTGATTGGGCATTCAGCAAAGGTCCTTTTAGAAGGAGAAATGTTAGGAGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACCTCGTAGTCATCGTTCTAGAAGTCCCAGGAGGAGATTCTAGTTCTATGCACACACCTATTTGCAAGGATTATGTCACTGACTTCTAGAGATCAGGCTCTATGAATTCCTGGTCTATGCTGTACGATTGTTCCTTTGCCAGTTTTTCTTTAATTTTCTGTTCCCTTAACTCTGCTCTAAGTGAATGTATCTCGAGCTTGCCTGGCCTTTGTGAAAATTTAGATTCCTTTTATGAATATTTCAGAACTTTCCGGNTATCTTTTGAAATGGTTATGTTGGAGGCGGCATTGTGAGTTGATTGTCATGTAACATTTGTGGGGTATTTGATGTGTTTCAGTAGTGTGTACTAACGATTTACCTTTTGAGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E726907" ref_strand="+" ref_description="SGN-E726907 [LA13AF10]">
      <seq>aggctctttttgctgcagcggcgaaaatggcgaacccggaggaggctgtggatttcgagccagaggaagacgatctgatggacgaagacgttgacgcttcatcacctagggcaccgatgccaaagctgaaatcagccattacaggtggcggcggcggttcttctgcttctaagaaaatcaaaggacggggtttccgtgaagagactgctgaggctgaaaggaatgctcgcctttctgctcgatttgattcacttgactccgaaggtggccctggacctgaacgatccattgaaggatggattattttagtcactggagtcaatgaggaggcacacgaagatgatcttcataatacatttggtgagttcggggagatcaagaatttgcatttgaatctggatcgtcgttctggatttgtcaagggttatgcacttattgaatatgaaaactttgaagaagcagagagagctattagtgaaatggatgggaatgagctgctaactcagactatacatgttgattgggcattcagcaaaggtccttttagaaggagaaatgttaggaggaggtcacctcgtagtcatcgttctagaagtcccaggaggagattctagttctatgcacacacctatttgcaaggattatgtcactgacttctagagatcaggctctatgaattcctggtctatgctgtacgattgttcctttgccagtttttctttaattttctgttcccttaactctgctctaagtgaatgtatctcgagcttgcctggcctttgtgaaaatttagattccttttatgaatatttcagaactttccggntatcttttgaattggttatgttggaggcggcattgtgagttgattgtcatgtaacatttgtgggtaatttgaggtgtttccgtagtgtgtactagcgatttaccttttgagtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80544" stop="75165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80247" g_stop="79963" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79962" i_stop="78412" i_length="1551">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.156" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78411" g_stop="78275" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="422" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78274" i_stop="77885" i_length="390">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77884" g_stop="77739" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="568" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77738" i_stop="75838" i_length="1901">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75837" g_stop="75466" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="940" r_length="372" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="941" polyA_stop="952"/>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E726907" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>940</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80247" e_stop="79963"/>
          <exon e_start="78411" e_stop="78275"/>
          <exon e_start="77884" e_stop="77739"/>
          <exon e_start="75837" e_stop="75466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTTTTTGCTGCAGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTGGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCACCGATGCCAAAGCTGAAATCAGCCATTACAGGTGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGGGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGATTTGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGATGTTAGTTTCTACTCTTAACTCATCTTTTATATAACCCAACGAACTTTCTACCTCATTTTTTTCTTTTTTTTTTTAGAATTTTGTTCAAATTAGGGGAAAATGTTGCAGTGGGTCAACAATTCATCAAAACCCCAGATTCTCTCTTTGTGCGCTGGTGTTAAAGAATTGTTACCTATAATTGTTTTCTCTATGATTTTGTGACGGGAGGTTGATAGTTGGGGTAATGGGTAAAGTGTCTTAAGGAAATGTTTTAGTCTGGTTAGAGACTTCTAATTAAGAGAATATCTAGGTTTAGGATGTCTTAATTTTAACAGGTTAAAAATTGCTTATTCTTATAATTGTTTTTCTTTTGGTTTTTGTGTTATGAATAAAGAAAACTGCTACAGGTTGGTAATCCGCGTAATGTAATGACCCTCGAAGGAGTGTGTTTAGTTTGGTTTACAGTGTTGAATCTAGAGAACATCTAACTTTAGAAGACTAACATTGAACACTCAAGTGTTGACCCTGTTATCTTTAGAGTTTTTTCACGAGGTGCTTTTATGGTTTTATTGAGTGTATTTAGTATACTTTCTAGTTTTGGTTTAATTTGTTATCTGTTATTGATTAGTTGAACGATATTAAATTGCTTTTGTGAATGAGACCATGTTAAGGTTTCACCTACATTGTATAAGCAAGCAGAATTAGAGAAGTGAATAAAGAAGTTAGGACCTACTGCTAGTAGAAGTTGATTTTGTTCATCTGTGTGAAGAAAAGCAACTAGAGAAAGGAACACTCAAATATTGCTTGTACTCATCTTCAAGTTGTTAGGACCCTGTAACGGTATCTAGAAAGTGGAATAACTTGAAGATAATTAAGTCGAGGTCTTTTTTTGTCAAAAAAAATAATTAAGTTGAGGTCTTCATTTTCAGAAAGAGTGGAAAGATCGTGAAATAGGGTAAAATGTTTGTACTTAATGTATATCTGTGCTGTTTGGTCCCCTCCTCTAGCCATTGTGCTTATAAGCCTCCGCCCTCCAGCTTCGTGTTCTTTACATTATAAATGTGCTAACCAGTTGGATTGGGTTCCAGCTATTACTTTATTTACATCTAAGAAGCACGTAATGGTAGGCTGTATATTTGTCACTTTATCATTGTTGCTTAGCTTTTAGAGAGAGCTAGCTTTGTATAGCTAATGCAACTTACCCTCCAACGGCTCAGCTTGGTCTTCAGCACTTGCTGTCGGAGAAATTGGCCAACAGAATCTAATATGCTGATTTCAGTCGTAGATATTAGTTGTTTGATTGCTGGGTCACCAGCACTTCAAGTAATATGTAATTTGTGCTGGGTATCTCAGATATTTTTCAAGTTATGCAATTCTAATGTAATAAAAATCCCAAAATGTCTGATAGGTGCTGATTCAGACATGCATGGTGTCCCCCCCCCCCCCCCCCTCTTTTTTTTTTTTTTCTTTTCTTCAATATATATATATATATATATATTTGAAGTTACCGGTAAGGTTAATAAAGGTTTAGTTTAATTAGTAGTAGAGAGCTAATGAGGGGAACATCTGCAGCCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTCTGGATTTGTCAAGGTGAACTGACTCTTTCTTTCTCGGAATGTTTAGCTGCTTGCCTGCTTCTTTGGGTTTTGGGTGTTGTACATATGATGCTATATGAATTGCATCCCCATTGTATGCTTTAATCTAATAAACTTTCCTATCAAAAGATTTTGGATGATGACAAAATTCTTTTGATCAAGAAAAATTTGTTGAAGTTTATAAGTGACAGACATTCCTTCTTCCATATAACTATGTAAGAGCATTTCCTTGAATGAATCTGTAATGGAGTAAAATGGAATAAAATAGGATCAATGCTATGTTAATTATGAAGGATTCTAGATAGATACTTTTCTTTGTTTTAAGTTTCAACTTTTGTCGTAGTTTGGAGTGGTATAGTTTTTATACAGTTTTCCATTTTGACAGGGTTATGCACTTATTGAATATGAAAACTTTGAAGAAGCAGAGAGAGCTATTAGTGAAATGGATGGGAATGAGCTGCTAACTCAGACTATACATGTTGATTGGGCATTCAGCAAAGGTCCTTTTAGAAGGAGAAATGTTAGGAGGAGGTATTTTTCTTGGTTAATCCAATTAACATAATTTTGTGTAGAATAGCTGTGAAAAAATGTTGCCTGAATCAAGGATACACTTTTTCACTTTTAATCAATGTTGGCAAATGTTCCTTCAGAAGCATAGATTTACCCTCTTGACAAAAAGTCGGGGCCTTCAAATTATTTTCAGAGATTGGAATAGCTACTTCTTAAACATTTGCAACTGGATTAATGTTATGACGTCTGTAATTGTTTTCTTGCGAACTGTTTCACTATAATATATGTCGTTTATTGTATTGCCTTCAACTCCGTAGGAGTGGAATTGTCACTGGCCTCCCTCATGTTTTTGTTGATAAAAGTTACCAGCCCATTTCCTGTAATTCATGATTCAGCTGTCAGTTATGTGTGTGTGGGATCAATAATAACCACCTATTACTAAGACTCCCTTTTATTTAAACGTCTGGCAGCTGAATAGCCTGTGGATCAATATTATCTTAAATTTTTGCCTCATCTTTTATTCTTTTACGTTATAGTAGTTTTTTAATTCTATCAAAGCATTTCTCTGTGGAGGTGATGGACAGTGTATCCTTCAGTCGCTTAAATTCTCTTTTTTGCTCCCTGTTTTCTGAGGGTATGCATAATTGTTTGATTTATTTCCTTTTGCTGTTAATCTAGTTTCGGCCAAATCCCAGCTGAGATCATTGAATTAGGTTTCCTATTGATCATATTGTAGGCAAAAATTGATAACTTATCCCTCAATACATAGCTAGAAAAGTTCCAAATTGTTTAGCAGAAGTTTGAGTAGGATTAGCTCAATGATAAATACCAGTTCTCTGCAGCCTTATTTAGTAGACTAACTGCAAATTCTTATCAGACTTCTCTTCGGGTTTATTTGTCAAGTTTGCCAGCAATTAGAGAGCTGATTGTTTTGCAATATACATATGATTGCTATGGTTGTATGAAAATGTGTAGTGGTGGATTAGGTTTTCCTAACATCATTATGGTCACAATGATTGTCTGAAGATTTATGCATTTCTCACTCTCCCATGGATAGGTGTCCCCAGAGCAGTTTGGGCTTTTATTTAGCTTTTGGAGAGGGGTGCAAAGGTGGTGGAATTGATGCAAAAGACACTAGGAATGTGTCTGTGTGGGGTATGGGTTGCCATTTATAGTCAAATATAGGATAGGCTCTTCACATTTACCATTCGAAACTAACACGTGTCTTGTCGGAGATTTTCCTTTTTGGCAAAAAGGGAGTTGGATACCATATGATGAGCTCACACATAACCTATAAATCGGACTCTATTAGAGCAATGATGTAAGTCTGCGCATCTGTTTCCTGGAAATTTGTTAACCCTTGTTTAGTTATTGCAAATTACAGTGTCTCTGTGGTGCCATGAGTTGTGAAGGTGTTTCTAGTGTATCCATTAGAAAAAGAACAGAGGATGCTTATTATGCGCACAATGTCATGACTCTGCTTGTAATTGTTGAAGCTACAGACTAATAACTGGGTTGCTCAGACATATCAGTTTGAAAATACCAACTTAAGTTGTTGGTGCCCCATTCATAATGTTAGAAAAATAGGAAGAGTTAGAGATAAACAATATATTAAGCGAATTTTCTAGTCTGTTAGTGCCATTTTGAGCTGGTAGGAAGACTACTAATTATTTATTTTATGTTTGAAAAATGAAAGGTGAGAAAACTATGACTTATGAGAGAGTTGTTGCTCTATTGAGTCAATTTGGAGGAAAGTTTATCCTTGTTCTTTTAGATACTTCCCTTTATATGATAAATAGAAAATGAAATTCCTATGCGACTACATTACTGCAAAATCTATGTTTGAATGTTTGGAACATCACCCATATGATTTTTGTATTGAAGAACTATTGACTAACATGTAGCTGTCCTCGTCCTTGCAGGTCACCTCGTAGTCATCGTTCTAGAAGTCCCAGGAGGAGATTCTAGTTCTATGCACACACCTATTTGCAAGGATTATGTCACTGACTTCTAGAGATCAGGCTCTATGAATTCCTGGTCTATGCTGTACGATTGTTCCTTTGCCAGTTTTTCTTTAATTTTCTGTTCCCTTAACTCTGCTCTAAGTGAATGTATCTCGAGCTTGCCTGGCCTTTGTGAAAATTTAGATTCCTTTTATGAATATTTCAGAACTTTCCGGTTATCTTTTGAATTGGTTATGTTGGAGGCGGCATTGTGAGTTGATTGTCATGTAACATTTGTGGGTAATTTGATGTGTTTCAGTAGTGTGTACTAGCGATTTACCTTTTGAGTAC</genome_strand>
        <mrna_strand>AGGCTCTTTTTGCTGCAGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTGGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCACCGATGCCAAAGCTGAAATCAGCCATTACAGGTGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGGGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGATTTGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTCTGGATTTGTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................GGTTATGCACTTATTGAATATGAAAACTTTGAAGAAGCAGAGAGAGCTATTAGTGAAATGGATGGGAATGAGCTGCTAACTCAGACTATACATGTTGATTGGGCATTCAGCAAAGGTCCTTTTAGAAGGAGAAATGTTAGGAGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACCTCGTAGTCATCGTTCTAGAAGTCCCAGGAGGAGATTCTAGTTCTATGCACACACCTATTTGCAAGGATTATGTCACTGACTTCTAGAGATCAGGCTCTATGAATTCCTGGTCTATGCTGTACGATTGTTCCTTTGCCAGTTTTTCTTTAATTTTCTGTTCCCTTAACTCTGCTCTAAGTGAATGTATCTCGAGCTTGCCTGGCCTTTGTGAAAATTTAGATTCCTTTTATGAATATTTCAGAACTTTCCGGNTATCTTTTGAATTGGTTATGTTGGAGGCGGCATTGTGAGTTGATTGTCATGTAACATTTGTGGGTAATTTGAGGTGTTTCCGTAGTGTGTACTAGCGATTTACCTTTTGAGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E216678" ref_strand="+" ref_description="SGN-E216678 [cLEL-1-F2](-)">
      <seq>tatttgcaaggattatgtcactgacttctagagatcaggctctatgaattcctggtctatgctgtacgattgttcctttgccagtttttctttaattttctgttcccttaactctgctctaagtgaatgtatctcgagcttgcctggcctttgtgaaaatttagattccttttatgaatatttcagagctttccggttatcttttgaatgggttatgttggaggcggcattgtgagttgattgtcatgtaacatttgtgggtaatttgatgtgtttcagaagtgtgtcctaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76076" stop="75186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75776" g_stop="75486" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="292" polyA_stop="306"/>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E216678" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75776" e_stop="75486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTGCAAGGATTATGTCACTGACTTCTAGAGATCAGGCTCTATGAATTCCTGGTCTATGCTGTACGATTGTTCCTTTGCCAGTTTTTCTTTAATTTTCTGTTCCCTTAACTCTGCTCTAAGTGAATGTATCTCGAGCTTGCCTGGCCTTTGTGAAAATTTAGATTCCTTTTATGAATATTTCAGAACTTTCCGGTTATCTTTTGAATTGGTTATGTTGGAGGCGGCATTGTGAGTTGATTGTCATGTAACATTTGTGGGTAATTTGATGTGTTTCAGTAGTGTGTACTA</genome_strand>
        <mrna_strand>TATTTGCAAGGATTATGTCACTGACTTCTAGAGATCAGGCTCTATGAATTCCTGGTCTATGCTGTACGATTGTTCCTTTGCCAGTTTTTCTTTAATTTTCTGTTCCCTTAACTCTGCTCTAAGTGAATGTATCTCGAGCTTGCCTGGCCTTTGTGAAAATTTAGATTCCTTTTATGAATATTTCAGAGCTTTCCGGTTATCTTTTGAATGGGTTATGTTGGAGGCGGCATTGTGAGTTGATTGTCATGTAACATTTGTGGGTAATTTGATGTGTTTCAGAAGTGTGTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350226" ref_strand="+" ref_description="SGN-E350226 [cTOS-4-D5]">
      <seq>gaatgctcgcctttctgctcgatttgattcacttgactccgaaggtggccctggacctgaacgatccattgaaggatggattattttagtcactggagtcaatgaggaggcacacgaagatgatcttcataatacatttggtgagttcggggagatcaagaatttgcatttgaatctggatcgtcgttctggatttgtcaagggttatgcacttattgaatatgaaaactttgaagaagcagagagagctattagtgaaatggatgggaatgagctgctaactcagactatacatgttgattgggcattcagcaaaggtccttttagaaggagaaatgttaggaggaggtcacctcgtagtcatcgttctagaagtcccaggaggagattctagttctatgcacacacctatttgcaaggattatgtcactgacttctagagatcaggctctatgaattcctggtctatgctgtacgattgttcctttgccagtttttctttaattttctgttcccttaactctgctctaagtgaatgtatctcgagcttgcctggcctttgtgaaaatttagattccttttatgaatatttcagaactttccggttatcttttgaattnggtatgttggaggcggcattgtgagttgattgtcatgtaacatttgtgggtaatttgatgtgtttcagtaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80327" stop="75196"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80027" g_stop="79963" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79962" i_stop="78412" i_length="1551">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.156" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78411" g_stop="78275" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="202" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78274" i_stop="77885" i_length="390">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77884" g_stop="77739" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="348" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77738" i_stop="75838" i_length="1901">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75837" g_stop="75496" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="690" r_length="342" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E350226" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80027" e_stop="79963"/>
          <exon e_start="78411" e_stop="78275"/>
          <exon e_start="77884" e_stop="77739"/>
          <exon e_start="75837" e_stop="75496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGCTCGCCTTTCTGCTCGATTTGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGATGTTAGTTTCTACTCTTAACTCATCTTTTATATAACCCAACGAACTTTCTACCTCATTTTTTTCTTTTTTTTTTTAGAATTTTGTTCAAATTAGGGGAAAATGTTGCAGTGGGTCAACAATTCATCAAAACCCCAGATTCTCTCTTTGTGCGCTGGTGTTAAAGAATTGTTACCTATAATTGTTTTCTCTATGATTTTGTGACGGGAGGTTGATAGTTGGGGTAATGGGTAAAGTGTCTTAAGGAAATGTTTTAGTCTGGTTAGAGACTTCTAATTAAGAGAATATCTAGGTTTAGGATGTCTTAATTTTAACAGGTTAAAAATTGCTTATTCTTATAATTGTTTTTCTTTTGGTTTTTGTGTTATGAATAAAGAAAACTGCTACAGGTTGGTAATCCGCGTAATGTAATGACCCTCGAAGGAGTGTGTTTAGTTTGGTTTACAGTGTTGAATCTAGAGAACATCTAACTTTAGAAGACTAACATTGAACACTCAAGTGTTGACCCTGTTATCTTTAGAGTTTTTTCACGAGGTGCTTTTATGGTTTTATTGAGTGTATTTAGTATACTTTCTAGTTTTGGTTTAATTTGTTATCTGTTATTGATTAGTTGAACGATATTAAATTGCTTTTGTGAATGAGACCATGTTAAGGTTTCACCTACATTGTATAAGCAAGCAGAATTAGAGAAGTGAATAAAGAAGTTAGGACCTACTGCTAGTAGAAGTTGATTTTGTTCATCTGTGTGAAGAAAAGCAACTAGAGAAAGGAACACTCAAATATTGCTTGTACTCATCTTCAAGTTGTTAGGACCCTGTAACGGTATCTAGAAAGTGGAATAACTTGAAGATAATTAAGTCGAGGTCTTTTTTTGTCAAAAAAAATAATTAAGTTGAGGTCTTCATTTTCAGAAAGAGTGGAAAGATCGTGAAATAGGGTAAAATGTTTGTACTTAATGTATATCTGTGCTGTTTGGTCCCCTCCTCTAGCCATTGTGCTTATAAGCCTCCGCCCTCCAGCTTCGTGTTCTTTACATTATAAATGTGCTAACCAGTTGGATTGGGTTCCAGCTATTACTTTATTTACATCTAAGAAGCACGTAATGGTAGGCTGTATATTTGTCACTTTATCATTGTTGCTTAGCTTTTAGAGAGAGCTAGCTTTGTATAGCTAATGCAACTTACCCTCCAACGGCTCAGCTTGGTCTTCAGCACTTGCTGTCGGAGAAATTGGCCAACAGAATCTAATATGCTGATTTCAGTCGTAGATATTAGTTGTTTGATTGCTGGGTCACCAGCACTTCAAGTAATATGTAATTTGTGCTGGGTATCTCAGATATTTTTCAAGTTATGCAATTCTAATGTAATAAAAATCCCAAAATGTCTGATAGGTGCTGATTCAGACATGCATGGTGTCCCCCCCCCCCCCCCCCTCTTTTTTTTTTTTTTCTTTTCTTCAATATATATATATATATATATATTTGAAGTTACCGGTAAGGTTAATAAAGGTTTAGTTTAATTAGTAGTAGAGAGCTAATGAGGGGAACATCTGCAGCCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTCTGGATTTGTCAAGGTGAACTGACTCTTTCTTTCTCGGAATGTTTAGCTGCTTGCCTGCTTCTTTGGGTTTTGGGTGTTGTACATATGATGCTATATGAATTGCATCCCCATTGTATGCTTTAATCTAATAAACTTTCCTATCAAAAGATTTTGGATGATGACAAAATTCTTTTGATCAAGAAAAATTTGTTGAAGTTTATAAGTGACAGACATTCCTTCTTCCATATAACTATGTAAGAGCATTTCCTTGAATGAATCTGTAATGGAGTAAAATGGAATAAAATAGGATCAATGCTATGTTAATTATGAAGGATTCTAGATAGATACTTTTCTTTGTTTTAAGTTTCAACTTTTGTCGTAGTTTGGAGTGGTATAGTTTTTATACAGTTTTCCATTTTGACAGGGTTATGCACTTATTGAATATGAAAACTTTGAAGAAGCAGAGAGAGCTATTAGTGAAATGGATGGGAATGAGCTGCTAACTCAGACTATACATGTTGATTGGGCATTCAGCAAAGGTCCTTTTAGAAGGAGAAATGTTAGGAGGAGGTATTTTTCTTGGTTAATCCAATTAACATAATTTTGTGTAGAATAGCTGTGAAAAAATGTTGCCTGAATCAAGGATACACTTTTTCACTTTTAATCAATGTTGGCAAATGTTCCTTCAGAAGCATAGATTTACCCTCTTGACAAAAAGTCGGGGCCTTCAAATTATTTTCAGAGATTGGAATAGCTACTTCTTAAACATTTGCAACTGGATTAATGTTATGACGTCTGTAATTGTTTTCTTGCGAACTGTTTCACTATAATATATGTCGTTTATTGTATTGCCTTCAACTCCGTAGGAGTGGAATTGTCACTGGCCTCCCTCATGTTTTTGTTGATAAAAGTTACCAGCCCATTTCCTGTAATTCATGATTCAGCTGTCAGTTATGTGTGTGTGGGATCAATAATAACCACCTATTACTAAGACTCCCTTTTATTTAAACGTCTGGCAGCTGAATAGCCTGTGGATCAATATTATCTTAAATTTTTGCCTCATCTTTTATTCTTTTACGTTATAGTAGTTTTTTAATTCTATCAAAGCATTTCTCTGTGGAGGTGATGGACAGTGTATCCTTCAGTCGCTTAAATTCTCTTTTTTGCTCCCTGTTTTCTGAGGGTATGCATAATTGTTTGATTTATTTCCTTTTGCTGTTAATCTAGTTTCGGCCAAATCCCAGCTGAGATCATTGAATTAGGTTTCCTATTGATCATATTGTAGGCAAAAATTGATAACTTATCCCTCAATACATAGCTAGAAAAGTTCCAAATTGTTTAGCAGAAGTTTGAGTAGGATTAGCTCAATGATAAATACCAGTTCTCTGCAGCCTTATTTAGTAGACTAACTGCAAATTCTTATCAGACTTCTCTTCGGGTTTATTTGTCAAGTTTGCCAGCAATTAGAGAGCTGATTGTTTTGCAATATACATATGATTGCTATGGTTGTATGAAAATGTGTAGTGGTGGATTAGGTTTTCCTAACATCATTATGGTCACAATGATTGTCTGAAGATTTATGCATTTCTCACTCTCCCATGGATAGGTGTCCCCAGAGCAGTTTGGGCTTTTATTTAGCTTTTGGAGAGGGGTGCAAAGGTGGTGGAATTGATGCAAAAGACACTAGGAATGTGTCTGTGTGGGGTATGGGTTGCCATTTATAGTCAAATATAGGATAGGCTCTTCACATTTACCATTCGAAACTAACACGTGTCTTGTCGGAGATTTTCCTTTTTGGCAAAAAGGGAGTTGGATACCATATGATGAGCTCACACATAACCTATAAATCGGACTCTATTAGAGCAATGATGTAAGTCTGCGCATCTGTTTCCTGGAAATTTGTTAACCCTTGTTTAGTTATTGCAAATTACAGTGTCTCTGTGGTGCCATGAGTTGTGAAGGTGTTTCTAGTGTATCCATTAGAAAAAGAACAGAGGATGCTTATTATGCGCACAATGTCATGACTCTGCTTGTAATTGTTGAAGCTACAGACTAATAACTGGGTTGCTCAGACATATCAGTTTGAAAATACCAACTTAAGTTGTTGGTGCCCCATTCATAATGTTAGAAAAATAGGAAGAGTTAGAGATAAACAATATATTAAGCGAATTTTCTAGTCTGTTAGTGCCATTTTGAGCTGGTAGGAAGACTACTAATTATTTATTTTATGTTTGAAAAATGAAAGGTGAGAAAACTATGACTTATGAGAGAGTTGTTGCTCTATTGAGTCAATTTGGAGGAAAGTTTATCCTTGTTCTTTTAGATACTTCCCTTTATATGATAAATAGAAAATGAAATTCCTATGCGACTACATTACTGCAAAATCTATGTTTGAATGTTTGGAACATCACCCATATGATTTTTGTATTGAAGAACTATTGACTAACATGTAGCTGTCCTCGTCCTTGCAGGTCACCTCGTAGTCATCGTTCTAGAAGTCCCAGGAGGAGATTCTAGTTCTATGCACACACCTATTTGCAAGGATTATGTCACTGACTTCTAGAGATCAGGCTCTATGAATTCCTGGTCTATGCTGTACGATTGTTCCTTTGCCAGTTTTTCTTTAATTTTCTGTTCCCTTAACTCTGCTCTAAGTGAATGTATCTCGAGCTTGCCTGGCCTTTGTGAAAATTTAGATTCCTTTTATGAATATTTCAGAACTTTCCGGTTATCTTTTGAATTGGTTATGTTGGAGGCGGCATTGTGAGTTGATTGTCATGTAACATTTGTGGGTAATTTGATGTGTTTCAGTA</genome_strand>
        <mrna_strand>GAATGCTCGCCTTTCTGCTCGATTTGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTCTGGATTTGTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................GGTTATGCACTTATTGAATATGAAAACTTTGAAGAAGCAGAGAGAGCTATTAGTGAAATGGATGGGAATGAGCTGCTAACTCAGACTATACATGTTGATTGGGCATTCAGCAAAGGTCCTTTTAGAAGGAGAAATGTTAGGAGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACCTCGTAGTCATCGTTCTAGAAGTCCCAGGAGGAGATTCTAGTTCTATGCACACACCTATTTGCAAGGATTATGTCACTGACTTCTAGAGATCAGGCTCTATGAATTCCTGGTCTATGCTGTACGATTGTTCCTTTGCCAGTTTTTCTTTAATTTTCTGTTCCCTTAACTCTGCTCTAAGTGAATGTATCTCGAGCTTGCCTGGCCTTTGTGAAAATTTAGATTCCTTTTATGAATATTTCAGAACTTTCCGGTTATCTTTTGAATTNGGTATGTTGGAGGCGGCATTGTGAGTTGATTGTCATGTAACATTTGTGGGTAATTTGATGTGTTTCAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354538" ref_strand="+" ref_description="SGN-E354538 [cTOS-17-A24]">
      <seq>actttgaagaagcagagagagctattagtgaaatggatgggaatgagctgctaactcagactatacatgttgattgggcattcagcaaaggtccttttagaaggagaaatgttaggaggaggtcacctcgtagtcatcgttctagaagtcccaggaggagattctagttctatgcacacacctatttgcaaggattatgtcactgacttctagagatcaggctctatgaattcctggtctatgctgtacgattgttcctttgccagtttttctttaattttctgttcccttaactctgctctaagtgaatgtatctcgagcttgcctggcctttgtgaaaatttagattccttttatgaatatttcagaactttccggttatcttttgaattggttatgttggaggcggcattgtgagttgattgtcatgtaacatttgtgggtaatttgatgtgtttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78159" stop="75199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77859" g_stop="77739" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77738" i_stop="75838" i_length="1901">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75837" g_stop="75499" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="460" r_length="339" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E354538" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77859" e_stop="77739"/>
          <exon e_start="75837" e_stop="75499"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTGAAGAAGCAGAGAGAGCTATTAGTGAAATGGATGGGAATGAGCTGCTAACTCAGACTATACATGTTGATTGGGCATTCAGCAAAGGTCCTTTTAGAAGGAGAAATGTTAGGAGGAGGTATTTTTCTTGGTTAATCCAATTAACATAATTTTGTGTAGAATAGCTGTGAAAAAATGTTGCCTGAATCAAGGATACACTTTTTCACTTTTAATCAATGTTGGCAAATGTTCCTTCAGAAGCATAGATTTACCCTCTTGACAAAAAGTCGGGGCCTTCAAATTATTTTCAGAGATTGGAATAGCTACTTCTTAAACATTTGCAACTGGATTAATGTTATGACGTCTGTAATTGTTTTCTTGCGAACTGTTTCACTATAATATATGTCGTTTATTGTATTGCCTTCAACTCCGTAGGAGTGGAATTGTCACTGGCCTCCCTCATGTTTTTGTTGATAAAAGTTACCAGCCCATTTCCTGTAATTCATGATTCAGCTGTCAGTTATGTGTGTGTGGGATCAATAATAACCACCTATTACTAAGACTCCCTTTTATTTAAACGTCTGGCAGCTGAATAGCCTGTGGATCAATATTATCTTAAATTTTTGCCTCATCTTTTATTCTTTTACGTTATAGTAGTTTTTTAATTCTATCAAAGCATTTCTCTGTGGAGGTGATGGACAGTGTATCCTTCAGTCGCTTAAATTCTCTTTTTTGCTCCCTGTTTTCTGAGGGTATGCATAATTGTTTGATTTATTTCCTTTTGCTGTTAATCTAGTTTCGGCCAAATCCCAGCTGAGATCATTGAATTAGGTTTCCTATTGATCATATTGTAGGCAAAAATTGATAACTTATCCCTCAATACATAGCTAGAAAAGTTCCAAATTGTTTAGCAGAAGTTTGAGTAGGATTAGCTCAATGATAAATACCAGTTCTCTGCAGCCTTATTTAGTAGACTAACTGCAAATTCTTATCAGACTTCTCTTCGGGTTTATTTGTCAAGTTTGCCAGCAATTAGAGAGCTGATTGTTTTGCAATATACATATGATTGCTATGGTTGTATGAAAATGTGTAGTGGTGGATTAGGTTTTCCTAACATCATTATGGTCACAATGATTGTCTGAAGATTTATGCATTTCTCACTCTCCCATGGATAGGTGTCCCCAGAGCAGTTTGGGCTTTTATTTAGCTTTTGGAGAGGGGTGCAAAGGTGGTGGAATTGATGCAAAAGACACTAGGAATGTGTCTGTGTGGGGTATGGGTTGCCATTTATAGTCAAATATAGGATAGGCTCTTCACATTTACCATTCGAAACTAACACGTGTCTTGTCGGAGATTTTCCTTTTTGGCAAAAAGGGAGTTGGATACCATATGATGAGCTCACACATAACCTATAAATCGGACTCTATTAGAGCAATGATGTAAGTCTGCGCATCTGTTTCCTGGAAATTTGTTAACCCTTGTTTAGTTATTGCAAATTACAGTGTCTCTGTGGTGCCATGAGTTGTGAAGGTGTTTCTAGTGTATCCATTAGAAAAAGAACAGAGGATGCTTATTATGCGCACAATGTCATGACTCTGCTTGTAATTGTTGAAGCTACAGACTAATAACTGGGTTGCTCAGACATATCAGTTTGAAAATACCAACTTAAGTTGTTGGTGCCCCATTCATAATGTTAGAAAAATAGGAAGAGTTAGAGATAAACAATATATTAAGCGAATTTTCTAGTCTGTTAGTGCCATTTTGAGCTGGTAGGAAGACTACTAATTATTTATTTTATGTTTGAAAAATGAAAGGTGAGAAAACTATGACTTATGAGAGAGTTGTTGCTCTATTGAGTCAATTTGGAGGAAAGTTTATCCTTGTTCTTTTAGATACTTCCCTTTATATGATAAATAGAAAATGAAATTCCTATGCGACTACATTACTGCAAAATCTATGTTTGAATGTTTGGAACATCACCCATATGATTTTTGTATTGAAGAACTATTGACTAACATGTAGCTGTCCTCGTCCTTGCAGGTCACCTCGTAGTCATCGTTCTAGAAGTCCCAGGAGGAGATTCTAGTTCTATGCACACACCTATTTGCAAGGATTATGTCACTGACTTCTAGAGATCAGGCTCTATGAATTCCTGGTCTATGCTGTACGATTGTTCCTTTGCCAGTTTTTCTTTAATTTTCTGTTCCCTTAACTCTGCTCTAAGTGAATGTATCTCGAGCTTGCCTGGCCTTTGTGAAAATTTAGATTCCTTTTATGAATATTTCAGAACTTTCCGGTTATCTTTTGAATTGGTTATGTTGGAGGCGGCATTGTGAGTTGATTGTCATGTAACATTTGTGGGTAATTTGATGTGTTTCA</genome_strand>
        <mrna_strand>ACTTTGAAGAAGCAGAGAGAGCTATTAGTGAAATGGATGGGAATGAGCTGCTAACTCAGACTATACATGTTGATTGGGCATTCAGCAAAGGTCCTTTTAGAAGGAGAAATGTTAGGAGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACCTCGTAGTCATCGTTCTAGAAGTCCCAGGAGGAGATTCTAGTTCTATGCACACACCTATTTGCAAGGATTATGTCACTGACTTCTAGAGATCAGGCTCTATGAATTCCTGGTCTATGCTGTACGATTGTTCCTTTGCCAGTTTTTCTTTAATTTTCTGTTCCCTTAACTCTGCTCTAAGTGAATGTATCTCGAGCTTGCCTGGCCTTTGTGAAAATTTAGATTCCTTTTATGAATATTTCAGAACTTTCCGGTTATCTTTTGAATTGGTTATGTTGGAGGCGGCATTGTGAGTTGATTGTCATGTAACATTTGTGGGTAATTTGATGTGTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708439" ref_strand="+" ref_description="SGN-E708439 [FA35DB01]">
      <seq>ccctattagaaccccagattctctctttttgctgcagcggcgcatatggcgaacccggaggaggctgtggatttcgagccagaggaagacgatctgatggacgaagacgttgacgcttcatcacctagggcaccgatgccaaagctgaaatcagccattacaggtggcggcggcggttcttctgcttctaagaaaatcaaaggacggggtttccgtgaagagactgctgaggctgaaaggaatgctcgcctttctgctcgatttgattcacttgactccgaaggtggccctggacctgaacgatccattgaaggatggattattttagtcactggagtcaatgaggaggcacacgaagatgatcttcataatacatttggtgagttcggggagatcaagaatttgcatttgaatctggatcgtcgttctggatttgtcaagggttatgcacttattgaatatgaaaactttgaagaagcagagagagctattagtgaaatggatgggaatgagctgctaactcagactatacatgttgattgggcattcagcaaaggtccttttagaaggagaaatgttaggaggaggtcacctcgtagtcatcgttctagaagtcccaggaggagattctagttctatgcacacacctatttgcaaggattatgtcactgacttctagagatcaggctctatgaattcctggtctatgctgtacgattgttcctttgccagtttttctttaattttctgttcccttaactctgctctaagtgaatgtatctcgagcttgcctggcctttgtgaaaatttagattccttttatgaatatttcagaactttcgggttatcttttgaattggttatgttggaggcggcattgtgagttgattgtcatgtaacattttgtgggtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80562" stop="75213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80266" g_stop="79963" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79962" i_stop="78412" i_length="1551">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.156" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78411" g_stop="78275" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="441" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78274" i_stop="77885" i_length="390">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77884" g_stop="77739" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="587" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77738" i_stop="75838" i_length="1901">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75837" g_stop="75521" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="904" r_length="317" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="912" polyA_stop="923"/>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E708439" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>904</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80266" e_stop="79963"/>
          <exon e_start="78411" e_stop="78275"/>
          <exon e_start="77884" e_stop="77739"/>
          <exon e_start="75837" e_stop="75521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAATCAAAACCCCAGATTCTCTCTTTTTGCTGCAGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTGGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCACCGATGCCAAAGCTGAAATCAGCCATTACAGGTGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGGGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGATTTGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGATGTTAGTTTCTACTCTTAACTCATCTTTTATATAACCCAACGAACTTTCTACCTCATTTTTTTCTTTTTTTTTTTAGAATTTTGTTCAAATTAGGGGAAAATGTTGCAGTGGGTCAACAATTCATCAAAACCCCAGATTCTCTCTTTGTGCGCTGGTGTTAAAGAATTGTTACCTATAATTGTTTTCTCTATGATTTTGTGACGGGAGGTTGATAGTTGGGGTAATGGGTAAAGTGTCTTAAGGAAATGTTTTAGTCTGGTTAGAGACTTCTAATTAAGAGAATATCTAGGTTTAGGATGTCTTAATTTTAACAGGTTAAAAATTGCTTATTCTTATAATTGTTTTTCTTTTGGTTTTTGTGTTATGAATAAAGAAAACTGCTACAGGTTGGTAATCCGCGTAATGTAATGACCCTCGAAGGAGTGTGTTTAGTTTGGTTTACAGTGTTGAATCTAGAGAACATCTAACTTTAGAAGACTAACATTGAACACTCAAGTGTTGACCCTGTTATCTTTAGAGTTTTTTCACGAGGTGCTTTTATGGTTTTATTGAGTGTATTTAGTATACTTTCTAGTTTTGGTTTAATTTGTTATCTGTTATTGATTAGTTGAACGATATTAAATTGCTTTTGTGAATGAGACCATGTTAAGGTTTCACCTACATTGTATAAGCAAGCAGAATTAGAGAAGTGAATAAAGAAGTTAGGACCTACTGCTAGTAGAAGTTGATTTTGTTCATCTGTGTGAAGAAAAGCAACTAGAGAAAGGAACACTCAAATATTGCTTGTACTCATCTTCAAGTTGTTAGGACCCTGTAACGGTATCTAGAAAGTGGAATAACTTGAAGATAATTAAGTCGAGGTCTTTTTTTGTCAAAAAAAATAATTAAGTTGAGGTCTTCATTTTCAGAAAGAGTGGAAAGATCGTGAAATAGGGTAAAATGTTTGTACTTAATGTATATCTGTGCTGTTTGGTCCCCTCCTCTAGCCATTGTGCTTATAAGCCTCCGCCCTCCAGCTTCGTGTTCTTTACATTATAAATGTGCTAACCAGTTGGATTGGGTTCCAGCTATTACTTTATTTACATCTAAGAAGCACGTAATGGTAGGCTGTATATTTGTCACTTTATCATTGTTGCTTAGCTTTTAGAGAGAGCTAGCTTTGTATAGCTAATGCAACTTACCCTCCAACGGCTCAGCTTGGTCTTCAGCACTTGCTGTCGGAGAAATTGGCCAACAGAATCTAATATGCTGATTTCAGTCGTAGATATTAGTTGTTTGATTGCTGGGTCACCAGCACTTCAAGTAATATGTAATTTGTGCTGGGTATCTCAGATATTTTTCAAGTTATGCAATTCTAATGTAATAAAAATCCCAAAATGTCTGATAGGTGCTGATTCAGACATGCATGGTGTCCCCCCCCCCCCCCCCCTCTTTTTTTTTTTTTTCTTTTCTTCAATATATATATATATATATATATTTGAAGTTACCGGTAAGGTTAATAAAGGTTTAGTTTAATTAGTAGTAGAGAGCTAATGAGGGGAACATCTGCAGCCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTCTGGATTTGTCAAGGTGAACTGACTCTTTCTTTCTCGGAATGTTTAGCTGCTTGCCTGCTTCTTTGGGTTTTGGGTGTTGTACATATGATGCTATATGAATTGCATCCCCATTGTATGCTTTAATCTAATAAACTTTCCTATCAAAAGATTTTGGATGATGACAAAATTCTTTTGATCAAGAAAAATTTGTTGAAGTTTATAAGTGACAGACATTCCTTCTTCCATATAACTATGTAAGAGCATTTCCTTGAATGAATCTGTAATGGAGTAAAATGGAATAAAATAGGATCAATGCTATGTTAATTATGAAGGATTCTAGATAGATACTTTTCTTTGTTTTAAGTTTCAACTTTTGTCGTAGTTTGGAGTGGTATAGTTTTTATACAGTTTTCCATTTTGACAGGGTTATGCACTTATTGAATATGAAAACTTTGAAGAAGCAGAGAGAGCTATTAGTGAAATGGATGGGAATGAGCTGCTAACTCAGACTATACATGTTGATTGGGCATTCAGCAAAGGTCCTTTTAGAAGGAGAAATGTTAGGAGGAGGTATTTTTCTTGGTTAATCCAATTAACATAATTTTGTGTAGAATAGCTGTGAAAAAATGTTGCCTGAATCAAGGATACACTTTTTCACTTTTAATCAATGTTGGCAAATGTTCCTTCAGAAGCATAGATTTACCCTCTTGACAAAAAGTCGGGGCCTTCAAATTATTTTCAGAGATTGGAATAGCTACTTCTTAAACATTTGCAACTGGATTAATGTTATGACGTCTGTAATTGTTTTCTTGCGAACTGTTTCACTATAATATATGTCGTTTATTGTATTGCCTTCAACTCCGTAGGAGTGGAATTGTCACTGGCCTCCCTCATGTTTTTGTTGATAAAAGTTACCAGCCCATTTCCTGTAATTCATGATTCAGCTGTCAGTTATGTGTGTGTGGGATCAATAATAACCACCTATTACTAAGACTCCCTTTTATTTAAACGTCTGGCAGCTGAATAGCCTGTGGATCAATATTATCTTAAATTTTTGCCTCATCTTTTATTCTTTTACGTTATAGTAGTTTTTTAATTCTATCAAAGCATTTCTCTGTGGAGGTGATGGACAGTGTATCCTTCAGTCGCTTAAATTCTCTTTTTTGCTCCCTGTTTTCTGAGGGTATGCATAATTGTTTGATTTATTTCCTTTTGCTGTTAATCTAGTTTCGGCCAAATCCCAGCTGAGATCATTGAATTAGGTTTCCTATTGATCATATTGTAGGCAAAAATTGATAACTTATCCCTCAATACATAGCTAGAAAAGTTCCAAATTGTTTAGCAGAAGTTTGAGTAGGATTAGCTCAATGATAAATACCAGTTCTCTGCAGCCTTATTTAGTAGACTAACTGCAAATTCTTATCAGACTTCTCTTCGGGTTTATTTGTCAAGTTTGCCAGCAATTAGAGAGCTGATTGTTTTGCAATATACATATGATTGCTATGGTTGTATGAAAATGTGTAGTGGTGGATTAGGTTTTCCTAACATCATTATGGTCACAATGATTGTCTGAAGATTTATGCATTTCTCACTCTCCCATGGATAGGTGTCCCCAGAGCAGTTTGGGCTTTTATTTAGCTTTTGGAGAGGGGTGCAAAGGTGGTGGAATTGATGCAAAAGACACTAGGAATGTGTCTGTGTGGGGTATGGGTTGCCATTTATAGTCAAATATAGGATAGGCTCTTCACATTTACCATTCGAAACTAACACGTGTCTTGTCGGAGATTTTCCTTTTTGGCAAAAAGGGAGTTGGATACCATATGATGAGCTCACACATAACCTATAAATCGGACTCTATTAGAGCAATGATGTAAGTCTGCGCATCTGTTTCCTGGAAATTTGTTAACCCTTGTTTAGTTATTGCAAATTACAGTGTCTCTGTGGTGCCATGAGTTGTGAAGGTGTTTCTAGTGTATCCATTAGAAAAAGAACAGAGGATGCTTATTATGCGCACAATGTCATGACTCTGCTTGTAATTGTTGAAGCTACAGACTAATAACTGGGTTGCTCAGACATATCAGTTTGAAAATACCAACTTAAGTTGTTGGTGCCCCATTCATAATGTTAGAAAAATAGGAAGAGTTAGAGATAAACAATATATTAAGCGAATTTTCTAGTCTGTTAGTGCCATTTTGAGCTGGTAGGAAGACTACTAATTATTTATTTTATGTTTGAAAAATGAAAGGTGAGAAAACTATGACTTATGAGAGAGTTGTTGCTCTATTGAGTCAATTTGGAGGAAAGTTTATCCTTGTTCTTTTAGATACTTCCCTTTATATGATAAATAGAAAATGAAATTCCTATGCGACTACATTACTGCAAAATCTATGTTTGAATGTTTGGAACATCACCCATATGATTTTTGTATTGAAGAACTATTGACTAACATGTAGCTGTCCTCGTCCTTGCAGGTCACCTCGTAGTCATCGTTCTAGAAGTCCCAGGAGGAGATTCTAGTTCTATGCACACACCTATTTGCAAGGATTATGTCACTGACTTCTAGAGATCAGGCTCTATGAATTCCTGGTCTATGCTGTACGATTGTTCCTTTGCCAGTTTTTCTTTAATTTTCTGTTCCCTTAACTCTGCTCTAAGTGAATGTATCTCGAGCTTGCCTGGCCTTTGTGAAAATTTAGATTCCTTTTATGAATATTTCAGAACTTTCCGGTTATCTTTTGAATTGGTTATGTTGGAGGCGGCATTGTGAGTTGATTGTCATGTAACATTT</genome_strand>
        <mrna_strand>CCCTATTAGAACCCCAGATTCTCTCTTTTTGCTGCAGCGGCGCATATGGCGAACCCGGAGGAGGCTGTGGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCACCGATGCCAAAGCTGAAATCAGCCATTACAGGTGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGGGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGATTTGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTCTGGATTTGTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................GGTTATGCACTTATTGAATATGAAAACTTTGAAGAAGCAGAGAGAGCTATTAGTGAAATGGATGGGAATGAGCTGCTAACTCAGACTATACATGTTGATTGGGCATTCAGCAAAGGTCCTTTTAGAAGGAGAAATGTTAGGAGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACCTCGTAGTCATCGTTCTAGAAGTCCCAGGAGGAGATTCTAGTTCTATGCACACACCTATTTGCAAGGATTATGTCACTGACTTCTAGAGATCAGGCTCTATGAATTCCTGGTCTATGCTGTACGATTGTTCCTTTGCCAGTTTTTCTTTAATTTTCTGTTCCCTTAACTCTGCTCTAAGTGAATGTATCTCGAGCTTGCCTGGCCTTTGTGAAAATTTAGATTCCTTTTATGAATATTTCAGAACTTTCGGGTTATCTTTTGAATTGGTTATGTTGGAGGCGGCATTGTGAGTTGATTGTCATGTAACATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727063" ref_strand="+" ref_description="SGN-E727063 [LA13CE04]">
      <seq>attagtactaataaataaatatatacagttgaaacaagcgaatcaaaaccccagattctctctttttgctgcagcggcgaaaatggcgaacccggaggaggctgtggatttcgagccagaggaagacgatctgatggacgaagacgttgacgcttcatcacctagggcaccgatgccaaagctgaaatcagccattacaggtggcggcggcggttcttctgcttctaagaaaatcaaaggacggggtttccgtgaagagactgctgaggctgaaaggaatgctcgcctttctgctcgatttgattcacttgactccgaaggtggccctggacctgaacgatccattgaaggatggattattttagtcactggagtcaatgaggaggcacacgaagatgatcttcataatacatttggtgagttcggggagatcaagaatttgcatttgaatctggatcgtcgttctggatttgtcaagggttatgcacttattgaatatgaaaactttgaagaagcagagagagctattagtgaaatggatgggaatgagctgctaactcagactatacatgttgattgggcattcagcaaaggtccttttagaaggagaaatgttaggaggaggtcacctcgtagtcatcgttctagaagtcccaggaggagattctagttctatgcacacacctatttgcaaggattatgtcactgacttctagagatcaggctctatgaattcctggtctatgctgtacgattgttcctttgccagtttttctttaattttctgttcccttaactctgctctaagtgaatgtatctcgagctttgcctggccttgtgaaaatttagattccttttatgaatatttcagaactttccggttatcttttgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80603" stop="75268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80303" g_stop="79963" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79962" i_stop="78412" i_length="1551">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.156" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78411" g_stop="78275" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="478" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78274" i_stop="77885" i_length="390">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77884" g_stop="77739" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="624" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77738" i_stop="75838" i_length="1901">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75837" g_stop="75568" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="894" r_length="270" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E727063" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>894</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80303" e_stop="79963"/>
          <exon e_start="78411" e_stop="78275"/>
          <exon e_start="77884" e_stop="77739"/>
          <exon e_start="75837" e_stop="75568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGTACTAATAAATAAATATATACAGTTGAAACAAGCGAATCAAAACCCCAGATTCTCTCTTTTTGCTGCAGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTGGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCACCGATGCCAAAGCTGAAATCAGCCATTACAGGTGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGGGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGATTTGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGATGTTAGTTTCTACTCTTAACTCATCTTTTATATAACCCAACGAACTTTCTACCTCATTTTTTTCTTTTTTTTTTTAGAATTTTGTTCAAATTAGGGGAAAATGTTGCAGTGGGTCAACAATTCATCAAAACCCCAGATTCTCTCTTTGTGCGCTGGTGTTAAAGAATTGTTACCTATAATTGTTTTCTCTATGATTTTGTGACGGGAGGTTGATAGTTGGGGTAATGGGTAAAGTGTCTTAAGGAAATGTTTTAGTCTGGTTAGAGACTTCTAATTAAGAGAATATCTAGGTTTAGGATGTCTTAATTTTAACAGGTTAAAAATTGCTTATTCTTATAATTGTTTTTCTTTTGGTTTTTGTGTTATGAATAAAGAAAACTGCTACAGGTTGGTAATCCGCGTAATGTAATGACCCTCGAAGGAGTGTGTTTAGTTTGGTTTACAGTGTTGAATCTAGAGAACATCTAACTTTAGAAGACTAACATTGAACACTCAAGTGTTGACCCTGTTATCTTTAGAGTTTTTTCACGAGGTGCTTTTATGGTTTTATTGAGTGTATTTAGTATACTTTCTAGTTTTGGTTTAATTTGTTATCTGTTATTGATTAGTTGAACGATATTAAATTGCTTTTGTGAATGAGACCATGTTAAGGTTTCACCTACATTGTATAAGCAAGCAGAATTAGAGAAGTGAATAAAGAAGTTAGGACCTACTGCTAGTAGAAGTTGATTTTGTTCATCTGTGTGAAGAAAAGCAACTAGAGAAAGGAACACTCAAATATTGCTTGTACTCATCTTCAAGTTGTTAGGACCCTGTAACGGTATCTAGAAAGTGGAATAACTTGAAGATAATTAAGTCGAGGTCTTTTTTTGTCAAAAAAAATAATTAAGTTGAGGTCTTCATTTTCAGAAAGAGTGGAAAGATCGTGAAATAGGGTAAAATGTTTGTACTTAATGTATATCTGTGCTGTTTGGTCCCCTCCTCTAGCCATTGTGCTTATAAGCCTCCGCCCTCCAGCTTCGTGTTCTTTACATTATAAATGTGCTAACCAGTTGGATTGGGTTCCAGCTATTACTTTATTTACATCTAAGAAGCACGTAATGGTAGGCTGTATATTTGTCACTTTATCATTGTTGCTTAGCTTTTAGAGAGAGCTAGCTTTGTATAGCTAATGCAACTTACCCTCCAACGGCTCAGCTTGGTCTTCAGCACTTGCTGTCGGAGAAATTGGCCAACAGAATCTAATATGCTGATTTCAGTCGTAGATATTAGTTGTTTGATTGCTGGGTCACCAGCACTTCAAGTAATATGTAATTTGTGCTGGGTATCTCAGATATTTTTCAAGTTATGCAATTCTAATGTAATAAAAATCCCAAAATGTCTGATAGGTGCTGATTCAGACATGCATGGTGTCCCCCCCCCCCCCCCCCTCTTTTTTTTTTTTTTCTTTTCTTCAATATATATATATATATATATATTTGAAGTTACCGGTAAGGTTAATAAAGGTTTAGTTTAATTAGTAGTAGAGAGCTAATGAGGGGAACATCTGCAGCCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTCTGGATTTGTCAAGGTGAACTGACTCTTTCTTTCTCGGAATGTTTAGCTGCTTGCCTGCTTCTTTGGGTTTTGGGTGTTGTACATATGATGCTATATGAATTGCATCCCCATTGTATGCTTTAATCTAATAAACTTTCCTATCAAAAGATTTTGGATGATGACAAAATTCTTTTGATCAAGAAAAATTTGTTGAAGTTTATAAGTGACAGACATTCCTTCTTCCATATAACTATGTAAGAGCATTTCCTTGAATGAATCTGTAATGGAGTAAAATGGAATAAAATAGGATCAATGCTATGTTAATTATGAAGGATTCTAGATAGATACTTTTCTTTGTTTTAAGTTTCAACTTTTGTCGTAGTTTGGAGTGGTATAGTTTTTATACAGTTTTCCATTTTGACAGGGTTATGCACTTATTGAATATGAAAACTTTGAAGAAGCAGAGAGAGCTATTAGTGAAATGGATGGGAATGAGCTGCTAACTCAGACTATACATGTTGATTGGGCATTCAGCAAAGGTCCTTTTAGAAGGAGAAATGTTAGGAGGAGGTATTTTTCTTGGTTAATCCAATTAACATAATTTTGTGTAGAATAGCTGTGAAAAAATGTTGCCTGAATCAAGGATACACTTTTTCACTTTTAATCAATGTTGGCAAATGTTCCTTCAGAAGCATAGATTTACCCTCTTGACAAAAAGTCGGGGCCTTCAAATTATTTTCAGAGATTGGAATAGCTACTTCTTAAACATTTGCAACTGGATTAATGTTATGACGTCTGTAATTGTTTTCTTGCGAACTGTTTCACTATAATATATGTCGTTTATTGTATTGCCTTCAACTCCGTAGGAGTGGAATTGTCACTGGCCTCCCTCATGTTTTTGTTGATAAAAGTTACCAGCCCATTTCCTGTAATTCATGATTCAGCTGTCAGTTATGTGTGTGTGGGATCAATAATAACCACCTATTACTAAGACTCCCTTTTATTTAAACGTCTGGCAGCTGAATAGCCTGTGGATCAATATTATCTTAAATTTTTGCCTCATCTTTTATTCTTTTACGTTATAGTAGTTTTTTAATTCTATCAAAGCATTTCTCTGTGGAGGTGATGGACAGTGTATCCTTCAGTCGCTTAAATTCTCTTTTTTGCTCCCTGTTTTCTGAGGGTATGCATAATTGTTTGATTTATTTCCTTTTGCTGTTAATCTAGTTTCGGCCAAATCCCAGCTGAGATCATTGAATTAGGTTTCCTATTGATCATATTGTAGGCAAAAATTGATAACTTATCCCTCAATACATAGCTAGAAAAGTTCCAAATTGTTTAGCAGAAGTTTGAGTAGGATTAGCTCAATGATAAATACCAGTTCTCTGCAGCCTTATTTAGTAGACTAACTGCAAATTCTTATCAGACTTCTCTTCGGGTTTATTTGTCAAGTTTGCCAGCAATTAGAGAGCTGATTGTTTTGCAATATACATATGATTGCTATGGTTGTATGAAAATGTGTAGTGGTGGATTAGGTTTTCCTAACATCATTATGGTCACAATGATTGTCTGAAGATTTATGCATTTCTCACTCTCCCATGGATAGGTGTCCCCAGAGCAGTTTGGGCTTTTATTTAGCTTTTGGAGAGGGGTGCAAAGGTGGTGGAATTGATGCAAAAGACACTAGGAATGTGTCTGTGTGGGGTATGGGTTGCCATTTATAGTCAAATATAGGATAGGCTCTTCACATTTACCATTCGAAACTAACACGTGTCTTGTCGGAGATTTTCCTTTTTGGCAAAAAGGGAGTTGGATACCATATGATGAGCTCACACATAACCTATAAATCGGACTCTATTAGAGCAATGATGTAAGTCTGCGCATCTGTTTCCTGGAAATTTGTTAACCCTTGTTTAGTTATTGCAAATTACAGTGTCTCTGTGGTGCCATGAGTTGTGAAGGTGTTTCTAGTGTATCCATTAGAAAAAGAACAGAGGATGCTTATTATGCGCACAATGTCATGACTCTGCTTGTAATTGTTGAAGCTACAGACTAATAACTGGGTTGCTCAGACATATCAGTTTGAAAATACCAACTTAAGTTGTTGGTGCCCCATTCATAATGTTAGAAAAATAGGAAGAGTTAGAGATAAACAATATATTAAGCGAATTTTCTAGTCTGTTAGTGCCATTTTGAGCTGGTAGGAAGACTACTAATTATTTATTTTATGTTTGAAAAATGAAAGGTGAGAAAACTATGACTTATGAGAGAGTTGTTGCTCTATTGAGTCAATTTGGAGGAAAGTTTATCCTTGTTCTTTTAGATACTTCCCTTTATATGATAAATAGAAAATGAAATTCCTATGCGACTACATTACTGCAAAATCTATGTTTGAATGTTTGGAACATCACCCATATGATTTTTGTATTGAAGAACTATTGACTAACATGTAGCTGTCCTCGTCCTTGCAGGTCACCTCGTAGTCATCGTTCTAGAAGTCCCAGGAGGAGATTCTAGTTCTATGCACACACCTATTTGCAAGGATTATGTCACTGACTTCTAGAGATCAGGCTCTATGAATTCCTGGTCTATGCTGTACGATTGTTCCTTTGCCAGTTTTTCTTTAATTTTCTGTTCCCTTAACTCTGCTCTAAGTGAATGTATCTCGAGC-TTGCCTGGCCTTTGTGAAAATTTAGATTCCTTTTATGAATATTTCAGAACTTTCCGGTTATCTTTTGAAT</genome_strand>
        <mrna_strand>ATTAGTACTAATAAATAAATATATACAGTTGAAACAAGCGAATCAAAACCCCAGATTCTCTCTTTTTGCTGCAGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTGGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCACCGATGCCAAAGCTGAAATCAGCCATTACAGGTGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGGGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGATTTGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTCTGGATTTGTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................GGTTATGCACTTATTGAATATGAAAACTTTGAAGAAGCAGAGAGAGCTATTAGTGAAATGGATGGGAATGAGCTGCTAACTCAGACTATACATGTTGATTGGGCATTCAGCAAAGGTCCTTTTAGAAGGAGAAATGTTAGGAGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACCTCGTAGTCATCGTTCTAGAAGTCCCAGGAGGAGATTCTAGTTCTATGCACACACCTATTTGCAAGGATTATGTCACTGACTTCTAGAGATCAGGCTCTATGAATTCCTGGTCTATGCTGTACGATTGTTCCTTTGCCAGTTTTTCTTTAATTTTCTGTTCCCTTAACTCTGCTCTAAGTGAATGTATCTCGAGCTTTGCCTGGCC-TTGTGAAAATTTAGATTCCTTTTATGAATATTTCAGAACTTTCCGGTTATCTTTTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261028" ref_strand="+" ref_description="SGN-E261028 [cLEG-55-D11]">
      <seq>aaaaccccagattctctctttttgctgcagcggcgaaaatggcgaacccggaggaggctgtggatttcgagccagaggaagacgatctgatggacgaagacgttgacgcttcatcacctagggcaccgatgccaaagctgaaatcagccattacaggtggcggcggcggttcttctgcttctaagaaaatcaaaggacggggtttccgtgaagagactgctgaggctgaaaggaatgctcgcctttctgctcgatttgattcacttgactccgaaggtggccctggacctgaacgatccattgaaggatggattattttagtcactggagtcaatgaggaggcacacgaagatgatcttcataatacatttggtgagttcggggagatcaagaatttgcatttgaatctggatcgtcgttctggatttgtcaagggttatgcacttattgaatatgaaaactttgaagaagcagagagagctattagtgaaatggatgggaatgagctgctaactcagactatacatgttgattgggcattcagcaaaggtccttttagaaggagaaatgtttaggaggaggtcacctcgtagtcatcgttctagaagtcccaggaggagattctagttctatgcacacacctatttgcaaggattatgtcactgacttctagagatcaggctctatgaattcctggtctatgctgtacgattgttcctttgccagtttttctttaattttctgttcccttactctgctctaagtgatgtatctcgagcttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80559" stop="75333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80259" g_stop="79963" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79962" i_stop="78412" i_length="1551">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.156" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78411" g_stop="78275" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="434" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78274" i_stop="77885" i_length="390">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77884" g_stop="77739" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="581" r_length="147" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77738" i_stop="75838" i_length="1901">
            <donor d_prob="0.970" d_score="0.96"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75837" g_stop="75633" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="784" r_length="203" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E261028" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80259" e_stop="79963"/>
          <exon e_start="78411" e_stop="78275"/>
          <exon e_start="77884" e_stop="77739"/>
          <exon e_start="75837" e_stop="75633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCCCAGATTCTCTCTTTTTGCTGCAGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTGGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCACCGATGCCAAAGCTGAAATCAGCCATTACAGGTGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGGGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGATTTGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGATGTTAGTTTCTACTCTTAACTCATCTTTTATATAACCCAACGAACTTTCTACCTCATTTTTTTCTTTTTTTTTTTAGAATTTTGTTCAAATTAGGGGAAAATGTTGCAGTGGGTCAACAATTCATCAAAACCCCAGATTCTCTCTTTGTGCGCTGGTGTTAAAGAATTGTTACCTATAATTGTTTTCTCTATGATTTTGTGACGGGAGGTTGATAGTTGGGGTAATGGGTAAAGTGTCTTAAGGAAATGTTTTAGTCTGGTTAGAGACTTCTAATTAAGAGAATATCTAGGTTTAGGATGTCTTAATTTTAACAGGTTAAAAATTGCTTATTCTTATAATTGTTTTTCTTTTGGTTTTTGTGTTATGAATAAAGAAAACTGCTACAGGTTGGTAATCCGCGTAATGTAATGACCCTCGAAGGAGTGTGTTTAGTTTGGTTTACAGTGTTGAATCTAGAGAACATCTAACTTTAGAAGACTAACATTGAACACTCAAGTGTTGACCCTGTTATCTTTAGAGTTTTTTCACGAGGTGCTTTTATGGTTTTATTGAGTGTATTTAGTATACTTTCTAGTTTTGGTTTAATTTGTTATCTGTTATTGATTAGTTGAACGATATTAAATTGCTTTTGTGAATGAGACCATGTTAAGGTTTCACCTACATTGTATAAGCAAGCAGAATTAGAGAAGTGAATAAAGAAGTTAGGACCTACTGCTAGTAGAAGTTGATTTTGTTCATCTGTGTGAAGAAAAGCAACTAGAGAAAGGAACACTCAAATATTGCTTGTACTCATCTTCAAGTTGTTAGGACCCTGTAACGGTATCTAGAAAGTGGAATAACTTGAAGATAATTAAGTCGAGGTCTTTTTTTGTCAAAAAAAATAATTAAGTTGAGGTCTTCATTTTCAGAAAGAGTGGAAAGATCGTGAAATAGGGTAAAATGTTTGTACTTAATGTATATCTGTGCTGTTTGGTCCCCTCCTCTAGCCATTGTGCTTATAAGCCTCCGCCCTCCAGCTTCGTGTTCTTTACATTATAAATGTGCTAACCAGTTGGATTGGGTTCCAGCTATTACTTTATTTACATCTAAGAAGCACGTAATGGTAGGCTGTATATTTGTCACTTTATCATTGTTGCTTAGCTTTTAGAGAGAGCTAGCTTTGTATAGCTAATGCAACTTACCCTCCAACGGCTCAGCTTGGTCTTCAGCACTTGCTGTCGGAGAAATTGGCCAACAGAATCTAATATGCTGATTTCAGTCGTAGATATTAGTTGTTTGATTGCTGGGTCACCAGCACTTCAAGTAATATGTAATTTGTGCTGGGTATCTCAGATATTTTTCAAGTTATGCAATTCTAATGTAATAAAAATCCCAAAATGTCTGATAGGTGCTGATTCAGACATGCATGGTGTCCCCCCCCCCCCCCCCCTCTTTTTTTTTTTTTTCTTTTCTTCAATATATATATATATATATATATTTGAAGTTACCGGTAAGGTTAATAAAGGTTTAGTTTAATTAGTAGTAGAGAGCTAATGAGGGGAACATCTGCAGCCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTCTGGATTTGTCAAGGTGAACTGACTCTTTCTTTCTCGGAATGTTTAGCTGCTTGCCTGCTTCTTTGGGTTTTGGGTGTTGTACATATGATGCTATATGAATTGCATCCCCATTGTATGCTTTAATCTAATAAACTTTCCTATCAAAAGATTTTGGATGATGACAAAATTCTTTTGATCAAGAAAAATTTGTTGAAGTTTATAAGTGACAGACATTCCTTCTTCCATATAACTATGTAAGAGCATTTCCTTGAATGAATCTGTAATGGAGTAAAATGGAATAAAATAGGATCAATGCTATGTTAATTATGAAGGATTCTAGATAGATACTTTTCTTTGTTTTAAGTTTCAACTTTTGTCGTAGTTTGGAGTGGTATAGTTTTTATACAGTTTTCCATTTTGACAGGGTTATGCACTTATTGAATATGAAAACTTTGAAGAAGCAGAGAGAGCTATTAGTGAAATGGATGGGAATGAGCTGCTAACTCAGACTATACATGTTGATTGGGCATTCAGCAAAGGTCCTTTTAGAAGGAGAAATG-TTAGGAGGAGGTATTTTTCTTGGTTAATCCAATTAACATAATTTTGTGTAGAATAGCTGTGAAAAAATGTTGCCTGAATCAAGGATACACTTTTTCACTTTTAATCAATGTTGGCAAATGTTCCTTCAGAAGCATAGATTTACCCTCTTGACAAAAAGTCGGGGCCTTCAAATTATTTTCAGAGATTGGAATAGCTACTTCTTAAACATTTGCAACTGGATTAATGTTATGACGTCTGTAATTGTTTTCTTGCGAACTGTTTCACTATAATATATGTCGTTTATTGTATTGCCTTCAACTCCGTAGGAGTGGAATTGTCACTGGCCTCCCTCATGTTTTTGTTGATAAAAGTTACCAGCCCATTTCCTGTAATTCATGATTCAGCTGTCAGTTATGTGTGTGTGGGATCAATAATAACCACCTATTACTAAGACTCCCTTTTATTTAAACGTCTGGCAGCTGAATAGCCTGTGGATCAATATTATCTTAAATTTTTGCCTCATCTTTTATTCTTTTACGTTATAGTAGTTTTTTAATTCTATCAAAGCATTTCTCTGTGGAGGTGATGGACAGTGTATCCTTCAGTCGCTTAAATTCTCTTTTTTGCTCCCTGTTTTCTGAGGGTATGCATAATTGTTTGATTTATTTCCTTTTGCTGTTAATCTAGTTTCGGCCAAATCCCAGCTGAGATCATTGAATTAGGTTTCCTATTGATCATATTGTAGGCAAAAATTGATAACTTATCCCTCAATACATAGCTAGAAAAGTTCCAAATTGTTTAGCAGAAGTTTGAGTAGGATTAGCTCAATGATAAATACCAGTTCTCTGCAGCCTTATTTAGTAGACTAACTGCAAATTCTTATCAGACTTCTCTTCGGGTTTATTTGTCAAGTTTGCCAGCAATTAGAGAGCTGATTGTTTTGCAATATACATATGATTGCTATGGTTGTATGAAAATGTGTAGTGGTGGATTAGGTTTTCCTAACATCATTATGGTCACAATGATTGTCTGAAGATTTATGCATTTCTCACTCTCCCATGGATAGGTGTCCCCAGAGCAGTTTGGGCTTTTATTTAGCTTTTGGAGAGGGGTGCAAAGGTGGTGGAATTGATGCAAAAGACACTAGGAATGTGTCTGTGTGGGGTATGGGTTGCCATTTATAGTCAAATATAGGATAGGCTCTTCACATTTACCATTCGAAACTAACACGTGTCTTGTCGGAGATTTTCCTTTTTGGCAAAAAGGGAGTTGGATACCATATGATGAGCTCACACATAACCTATAAATCGGACTCTATTAGAGCAATGATGTAAGTCTGCGCATCTGTTTCCTGGAAATTTGTTAACCCTTGTTTAGTTATTGCAAATTACAGTGTCTCTGTGGTGCCATGAGTTGTGAAGGTGTTTCTAGTGTATCCATTAGAAAAAGAACAGAGGATGCTTATTATGCGCACAATGTCATGACTCTGCTTGTAATTGTTGAAGCTACAGACTAATAACTGGGTTGCTCAGACATATCAGTTTGAAAATACCAACTTAAGTTGTTGGTGCCCCATTCATAATGTTAGAAAAATAGGAAGAGTTAGAGATAAACAATATATTAAGCGAATTTTCTAGTCTGTTAGTGCCATTTTGAGCTGGTAGGAAGACTACTAATTATTTATTTTATGTTTGAAAAATGAAAGGTGAGAAAACTATGACTTATGAGAGAGTTGTTGCTCTATTGAGTCAATTTGGAGGAAAGTTTATCCTTGTTCTTTTAGATACTTCCCTTTATATGATAAATAGAAAATGAAATTCCTATGCGACTACATTACTGCAAAATCTATGTTTGAATGTTTGGAACATCACCCATATGATTTTTGTATTGAAGAACTATTGACTAACATGTAGCTGTCCTCGTCCTTGCAGGTCACCTCGTAGTCATCGTTCTAGAAGTCCCAGGAGGAGATTCTAGTTCTATGCACACACCTATTTGCAAGGATTATGTCACTGACTTCTAGAGATCAGGCTCTATGAATTCCTGGTCTATGCTGTACGATTGTTCCTTTGCCAGTTTTTCTTTAATTTTCTGTTCCCTTAACTCTGCTCTAAGTGAATGTATCTCGAGCTTGCC</genome_strand>
        <mrna_strand>AAAACCCCAGATTCTCTCTTTTTGCTGCAGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTGGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCACCGATGCCAAAGCTGAAATCAGCCATTACAGGTGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGGGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGATTTGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTCTGGATTTGTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................GGTTATGCACTTATTGAATATGAAAACTTTGAAGAAGCAGAGAGAGCTATTAGTGAAATGGATGGGAATGAGCTGCTAACTCAGACTATACATGTTGATTGGGCATTCAGCAAAGGTCCTTTTAGAAGGAGAAATGTTTAGGAGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACCTCGTAGTCATCGTTCTAGAAGTCCCAGGAGGAGATTCTAGTTCTATGCACACACCTATTTGCAAGGATTATGTCACTGACTTCTAGAGATCAGGCTCTATGAATTCCTGGTCTATGCTGTACGATTGTTCCTTTGCCAGTTTTTCTTTAATTTTCTGTTCCCTT-ACTCTGCTCTAAGTG-ATGTATCTCGAGCTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326507" ref_strand="+" ref_description="SGN-E326507 [cTOC-17-M1]">
      <seq>agcggcgaaaatggcgaacccggaggaggctgtggatttcgagccagaggaagacgatctgatggacgaagacgttgacgcttcatcacctagggcaccgatgccaaagctgaaatcagccattacaggtggcggcggcggttcttctgcttctaagaaaatcaaaggacggggtttccgtgaagagactgctgaggctgaaaggaatgctcgcctttctgctcgatttgattcacttgactccgaaggtggccctggacctgaacgatccattgaaggatggattattttagtcactggagtcaatgaggaggcacacgaagatgatcttcataatacatttggtgagttcggggagatcaagaatttgcatttgaatctggatcgtcgttctggatttgtcaagggttatgcacttattgaatatgaaaactttgaagaagcagagagagctattagtgaaatggatgggaatgagctgctaactcagactatacatgttgattgggcattcagcaaaggtccttttagaaggagaaatgttaggaggaggtcacctcgtagtcatcgttctagaagtcccaggaggagattctagttctatgcacacacctatttgcaaggattatgtcactgacttctagagatcaggctctatgaattcctggtctatgctgtacgattgntcctttgccagtttttctttaatttttctgtcccttactctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80531" stop="75361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80231" g_stop="79963" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79962" i_stop="78412" i_length="1551">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.156" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78411" g_stop="78275" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="406" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78274" i_stop="77885" i_length="390">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77884" g_stop="77739" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="552" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77738" i_stop="75838" i_length="1901">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75837" g_stop="75661" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="728" r_length="176" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E326507" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80231" e_stop="79963"/>
          <exon e_start="78411" e_stop="78275"/>
          <exon e_start="77884" e_stop="77739"/>
          <exon e_start="75837" e_stop="75661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTGGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCACCGATGCCAAAGCTGAAATCAGCCATTACAGGTGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGGGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGATTTGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGATGTTAGTTTCTACTCTTAACTCATCTTTTATATAACCCAACGAACTTTCTACCTCATTTTTTTCTTTTTTTTTTTAGAATTTTGTTCAAATTAGGGGAAAATGTTGCAGTGGGTCAACAATTCATCAAAACCCCAGATTCTCTCTTTGTGCGCTGGTGTTAAAGAATTGTTACCTATAATTGTTTTCTCTATGATTTTGTGACGGGAGGTTGATAGTTGGGGTAATGGGTAAAGTGTCTTAAGGAAATGTTTTAGTCTGGTTAGAGACTTCTAATTAAGAGAATATCTAGGTTTAGGATGTCTTAATTTTAACAGGTTAAAAATTGCTTATTCTTATAATTGTTTTTCTTTTGGTTTTTGTGTTATGAATAAAGAAAACTGCTACAGGTTGGTAATCCGCGTAATGTAATGACCCTCGAAGGAGTGTGTTTAGTTTGGTTTACAGTGTTGAATCTAGAGAACATCTAACTTTAGAAGACTAACATTGAACACTCAAGTGTTGACCCTGTTATCTTTAGAGTTTTTTCACGAGGTGCTTTTATGGTTTTATTGAGTGTATTTAGTATACTTTCTAGTTTTGGTTTAATTTGTTATCTGTTATTGATTAGTTGAACGATATTAAATTGCTTTTGTGAATGAGACCATGTTAAGGTTTCACCTACATTGTATAAGCAAGCAGAATTAGAGAAGTGAATAAAGAAGTTAGGACCTACTGCTAGTAGAAGTTGATTTTGTTCATCTGTGTGAAGAAAAGCAACTAGAGAAAGGAACACTCAAATATTGCTTGTACTCATCTTCAAGTTGTTAGGACCCTGTAACGGTATCTAGAAAGTGGAATAACTTGAAGATAATTAAGTCGAGGTCTTTTTTTGTCAAAAAAAATAATTAAGTTGAGGTCTTCATTTTCAGAAAGAGTGGAAAGATCGTGAAATAGGGTAAAATGTTTGTACTTAATGTATATCTGTGCTGTTTGGTCCCCTCCTCTAGCCATTGTGCTTATAAGCCTCCGCCCTCCAGCTTCGTGTTCTTTACATTATAAATGTGCTAACCAGTTGGATTGGGTTCCAGCTATTACTTTATTTACATCTAAGAAGCACGTAATGGTAGGCTGTATATTTGTCACTTTATCATTGTTGCTTAGCTTTTAGAGAGAGCTAGCTTTGTATAGCTAATGCAACTTACCCTCCAACGGCTCAGCTTGGTCTTCAGCACTTGCTGTCGGAGAAATTGGCCAACAGAATCTAATATGCTGATTTCAGTCGTAGATATTAGTTGTTTGATTGCTGGGTCACCAGCACTTCAAGTAATATGTAATTTGTGCTGGGTATCTCAGATATTTTTCAAGTTATGCAATTCTAATGTAATAAAAATCCCAAAATGTCTGATAGGTGCTGATTCAGACATGCATGGTGTCCCCCCCCCCCCCCCCCTCTTTTTTTTTTTTTTCTTTTCTTCAATATATATATATATATATATATTTGAAGTTACCGGTAAGGTTAATAAAGGTTTAGTTTAATTAGTAGTAGAGAGCTAATGAGGGGAACATCTGCAGCCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTCTGGATTTGTCAAGGTGAACTGACTCTTTCTTTCTCGGAATGTTTAGCTGCTTGCCTGCTTCTTTGGGTTTTGGGTGTTGTACATATGATGCTATATGAATTGCATCCCCATTGTATGCTTTAATCTAATAAACTTTCCTATCAAAAGATTTTGGATGATGACAAAATTCTTTTGATCAAGAAAAATTTGTTGAAGTTTATAAGTGACAGACATTCCTTCTTCCATATAACTATGTAAGAGCATTTCCTTGAATGAATCTGTAATGGAGTAAAATGGAATAAAATAGGATCAATGCTATGTTAATTATGAAGGATTCTAGATAGATACTTTTCTTTGTTTTAAGTTTCAACTTTTGTCGTAGTTTGGAGTGGTATAGTTTTTATACAGTTTTCCATTTTGACAGGGTTATGCACTTATTGAATATGAAAACTTTGAAGAAGCAGAGAGAGCTATTAGTGAAATGGATGGGAATGAGCTGCTAACTCAGACTATACATGTTGATTGGGCATTCAGCAAAGGTCCTTTTAGAAGGAGAAATGTTAGGAGGAGGTATTTTTCTTGGTTAATCCAATTAACATAATTTTGTGTAGAATAGCTGTGAAAAAATGTTGCCTGAATCAAGGATACACTTTTTCACTTTTAATCAATGTTGGCAAATGTTCCTTCAGAAGCATAGATTTACCCTCTTGACAAAAAGTCGGGGCCTTCAAATTATTTTCAGAGATTGGAATAGCTACTTCTTAAACATTTGCAACTGGATTAATGTTATGACGTCTGTAATTGTTTTCTTGCGAACTGTTTCACTATAATATATGTCGTTTATTGTATTGCCTTCAACTCCGTAGGAGTGGAATTGTCACTGGCCTCCCTCATGTTTTTGTTGATAAAAGTTACCAGCCCATTTCCTGTAATTCATGATTCAGCTGTCAGTTATGTGTGTGTGGGATCAATAATAACCACCTATTACTAAGACTCCCTTTTATTTAAACGTCTGGCAGCTGAATAGCCTGTGGATCAATATTATCTTAAATTTTTGCCTCATCTTTTATTCTTTTACGTTATAGTAGTTTTTTAATTCTATCAAAGCATTTCTCTGTGGAGGTGATGGACAGTGTATCCTTCAGTCGCTTAAATTCTCTTTTTTGCTCCCTGTTTTCTGAGGGTATGCATAATTGTTTGATTTATTTCCTTTTGCTGTTAATCTAGTTTCGGCCAAATCCCAGCTGAGATCATTGAATTAGGTTTCCTATTGATCATATTGTAGGCAAAAATTGATAACTTATCCCTCAATACATAGCTAGAAAAGTTCCAAATTGTTTAGCAGAAGTTTGAGTAGGATTAGCTCAATGATAAATACCAGTTCTCTGCAGCCTTATTTAGTAGACTAACTGCAAATTCTTATCAGACTTCTCTTCGGGTTTATTTGTCAAGTTTGCCAGCAATTAGAGAGCTGATTGTTTTGCAATATACATATGATTGCTATGGTTGTATGAAAATGTGTAGTGGTGGATTAGGTTTTCCTAACATCATTATGGTCACAATGATTGTCTGAAGATTTATGCATTTCTCACTCTCCCATGGATAGGTGTCCCCAGAGCAGTTTGGGCTTTTATTTAGCTTTTGGAGAGGGGTGCAAAGGTGGTGGAATTGATGCAAAAGACACTAGGAATGTGTCTGTGTGGGGTATGGGTTGCCATTTATAGTCAAATATAGGATAGGCTCTTCACATTTACCATTCGAAACTAACACGTGTCTTGTCGGAGATTTTCCTTTTTGGCAAAAAGGGAGTTGGATACCATATGATGAGCTCACACATAACCTATAAATCGGACTCTATTAGAGCAATGATGTAAGTCTGCGCATCTGTTTCCTGGAAATTTGTTAACCCTTGTTTAGTTATTGCAAATTACAGTGTCTCTGTGGTGCCATGAGTTGTGAAGGTGTTTCTAGTGTATCCATTAGAAAAAGAACAGAGGATGCTTATTATGCGCACAATGTCATGACTCTGCTTGTAATTGTTGAAGCTACAGACTAATAACTGGGTTGCTCAGACATATCAGTTTGAAAATACCAACTTAAGTTGTTGGTGCCCCATTCATAATGTTAGAAAAATAGGAAGAGTTAGAGATAAACAATATATTAAGCGAATTTTCTAGTCTGTTAGTGCCATTTTGAGCTGGTAGGAAGACTACTAATTATTTATTTTATGTTTGAAAAATGAAAGGTGAGAAAACTATGACTTATGAGAGAGTTGTTGCTCTATTGAGTCAATTTGGAGGAAAGTTTATCCTTGTTCTTTTAGATACTTCCCTTTATATGATAAATAGAAAATGAAATTCCTATGCGACTACATTACTGCAAAATCTATGTTTGAATGTTTGGAACATCACCCATATGATTTTTGTATTGAAGAACTATTGACTAACATGTAGCTGTCCTCGTCCTTGCAGGTCACCTCGTAGTCATCGTTCTAGAAGTCCCAGGAGGAGATTCTAGTTCTATGCACACACCTATTTGCAAGGATTATGTCACTGACTTCTAGAGATCAGGCTCTATGAATTCCTGGTCTATGCTGTACGATTGTTCCTTTGCCAGTTTTTCTTTAATTTTCTGTTCCCTTAACTCTG</genome_strand>
        <mrna_strand>AGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTGGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCACCGATGCCAAAGCTGAAATCAGCCATTACAGGTGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGGGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGATTTGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTCTGGATTTGTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................GGTTATGCACTTATTGAATATGAAAACTTTGAAGAAGCAGAGAGAGCTATTAGTGAAATGGATGGGAATGAGCTGCTAACTCAGACTATACATGTTGATTGGGCATTCAGCAAAGGTCCTTTTAGAAGGAGAAATGTTAGGAGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACCTCGTAGTCATCGTTCTAGAAGTCCCAGGAGGAGATTCTAGTTCTATGCACACACCTATTTGCAAGGATTATGTCACTGACTTCTAGAGATCAGGCTCTATGAATTCCTGGTCTATGCTGTACGATTGNTCCTTTGCCAGTTTTTCTTTAATTTTTCTGTCCCTT-ACTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326655" ref_strand="+" ref_description="SGN-E326655 [cTOC-17-M2]">
      <seq>agcggcgaaaatggcgaacccggaggaggctgtggatttcgagccagaggaagacgatctgatggacgaagacgttgacgcttcatcacctagggcaccgatgccaaagctgaaatcagccattacaggtggcggcggcggttcttctgcttctaagaaaatcaaaggacggggtttccgtgaagagactgctgaggctgaaaggaatgctcgcctttctgctcgatttgattcacttgactccgaaggtggccctggacctgaacgatccattgaaggatggattattttagtcactggagtcaatgaggaggcacacgaagatgatcttcataatacatttggtgagttcggggagatcaagaatttgcatttgaatctggatcgtcgttctggatttgtcaagggttatgcacttattgaatatgaaaactttgaagaagcagagagagctattagtgaaatggatgggaatgagctgctaactcagactatacatgttgattgggcattcagcaaaggtccttttagaaggagaaatgttaggaggaggtcacctcgtagtcatcgttctagaagtcccaggaggagattctagttctatgcacacacctatttgcaaggattatgtcactgacttctagagatcaggctctatgaattcctggtctatgctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80531" stop="75412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80231" g_stop="79963" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79962" i_stop="78412" i_length="1551">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.156" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78411" g_stop="78275" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="406" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78274" i_stop="77885" i_length="390">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77884" g_stop="77739" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="552" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77738" i_stop="75838" i_length="1901">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75837" g_stop="75712" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="678" r_length="126" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E326655" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326655" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80231" e_stop="79963"/>
          <exon e_start="78411" e_stop="78275"/>
          <exon e_start="77884" e_stop="77739"/>
          <exon e_start="75837" e_stop="75712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTGGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCACCGATGCCAAAGCTGAAATCAGCCATTACAGGTGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGGGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGATTTGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGATGTTAGTTTCTACTCTTAACTCATCTTTTATATAACCCAACGAACTTTCTACCTCATTTTTTTCTTTTTTTTTTTAGAATTTTGTTCAAATTAGGGGAAAATGTTGCAGTGGGTCAACAATTCATCAAAACCCCAGATTCTCTCTTTGTGCGCTGGTGTTAAAGAATTGTTACCTATAATTGTTTTCTCTATGATTTTGTGACGGGAGGTTGATAGTTGGGGTAATGGGTAAAGTGTCTTAAGGAAATGTTTTAGTCTGGTTAGAGACTTCTAATTAAGAGAATATCTAGGTTTAGGATGTCTTAATTTTAACAGGTTAAAAATTGCTTATTCTTATAATTGTTTTTCTTTTGGTTTTTGTGTTATGAATAAAGAAAACTGCTACAGGTTGGTAATCCGCGTAATGTAATGACCCTCGAAGGAGTGTGTTTAGTTTGGTTTACAGTGTTGAATCTAGAGAACATCTAACTTTAGAAGACTAACATTGAACACTCAAGTGTTGACCCTGTTATCTTTAGAGTTTTTTCACGAGGTGCTTTTATGGTTTTATTGAGTGTATTTAGTATACTTTCTAGTTTTGGTTTAATTTGTTATCTGTTATTGATTAGTTGAACGATATTAAATTGCTTTTGTGAATGAGACCATGTTAAGGTTTCACCTACATTGTATAAGCAAGCAGAATTAGAGAAGTGAATAAAGAAGTTAGGACCTACTGCTAGTAGAAGTTGATTTTGTTCATCTGTGTGAAGAAAAGCAACTAGAGAAAGGAACACTCAAATATTGCTTGTACTCATCTTCAAGTTGTTAGGACCCTGTAACGGTATCTAGAAAGTGGAATAACTTGAAGATAATTAAGTCGAGGTCTTTTTTTGTCAAAAAAAATAATTAAGTTGAGGTCTTCATTTTCAGAAAGAGTGGAAAGATCGTGAAATAGGGTAAAATGTTTGTACTTAATGTATATCTGTGCTGTTTGGTCCCCTCCTCTAGCCATTGTGCTTATAAGCCTCCGCCCTCCAGCTTCGTGTTCTTTACATTATAAATGTGCTAACCAGTTGGATTGGGTTCCAGCTATTACTTTATTTACATCTAAGAAGCACGTAATGGTAGGCTGTATATTTGTCACTTTATCATTGTTGCTTAGCTTTTAGAGAGAGCTAGCTTTGTATAGCTAATGCAACTTACCCTCCAACGGCTCAGCTTGGTCTTCAGCACTTGCTGTCGGAGAAATTGGCCAACAGAATCTAATATGCTGATTTCAGTCGTAGATATTAGTTGTTTGATTGCTGGGTCACCAGCACTTCAAGTAATATGTAATTTGTGCTGGGTATCTCAGATATTTTTCAAGTTATGCAATTCTAATGTAATAAAAATCCCAAAATGTCTGATAGGTGCTGATTCAGACATGCATGGTGTCCCCCCCCCCCCCCCCCTCTTTTTTTTTTTTTTCTTTTCTTCAATATATATATATATATATATATTTGAAGTTACCGGTAAGGTTAATAAAGGTTTAGTTTAATTAGTAGTAGAGAGCTAATGAGGGGAACATCTGCAGCCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTCTGGATTTGTCAAGGTGAACTGACTCTTTCTTTCTCGGAATGTTTAGCTGCTTGCCTGCTTCTTTGGGTTTTGGGTGTTGTACATATGATGCTATATGAATTGCATCCCCATTGTATGCTTTAATCTAATAAACTTTCCTATCAAAAGATTTTGGATGATGACAAAATTCTTTTGATCAAGAAAAATTTGTTGAAGTTTATAAGTGACAGACATTCCTTCTTCCATATAACTATGTAAGAGCATTTCCTTGAATGAATCTGTAATGGAGTAAAATGGAATAAAATAGGATCAATGCTATGTTAATTATGAAGGATTCTAGATAGATACTTTTCTTTGTTTTAAGTTTCAACTTTTGTCGTAGTTTGGAGTGGTATAGTTTTTATACAGTTTTCCATTTTGACAGGGTTATGCACTTATTGAATATGAAAACTTTGAAGAAGCAGAGAGAGCTATTAGTGAAATGGATGGGAATGAGCTGCTAACTCAGACTATACATGTTGATTGGGCATTCAGCAAAGGTCCTTTTAGAAGGAGAAATGTTAGGAGGAGGTATTTTTCTTGGTTAATCCAATTAACATAATTTTGTGTAGAATAGCTGTGAAAAAATGTTGCCTGAATCAAGGATACACTTTTTCACTTTTAATCAATGTTGGCAAATGTTCCTTCAGAAGCATAGATTTACCCTCTTGACAAAAAGTCGGGGCCTTCAAATTATTTTCAGAGATTGGAATAGCTACTTCTTAAACATTTGCAACTGGATTAATGTTATGACGTCTGTAATTGTTTTCTTGCGAACTGTTTCACTATAATATATGTCGTTTATTGTATTGCCTTCAACTCCGTAGGAGTGGAATTGTCACTGGCCTCCCTCATGTTTTTGTTGATAAAAGTTACCAGCCCATTTCCTGTAATTCATGATTCAGCTGTCAGTTATGTGTGTGTGGGATCAATAATAACCACCTATTACTAAGACTCCCTTTTATTTAAACGTCTGGCAGCTGAATAGCCTGTGGATCAATATTATCTTAAATTTTTGCCTCATCTTTTATTCTTTTACGTTATAGTAGTTTTTTAATTCTATCAAAGCATTTCTCTGTGGAGGTGATGGACAGTGTATCCTTCAGTCGCTTAAATTCTCTTTTTTGCTCCCTGTTTTCTGAGGGTATGCATAATTGTTTGATTTATTTCCTTTTGCTGTTAATCTAGTTTCGGCCAAATCCCAGCTGAGATCATTGAATTAGGTTTCCTATTGATCATATTGTAGGCAAAAATTGATAACTTATCCCTCAATACATAGCTAGAAAAGTTCCAAATTGTTTAGCAGAAGTTTGAGTAGGATTAGCTCAATGATAAATACCAGTTCTCTGCAGCCTTATTTAGTAGACTAACTGCAAATTCTTATCAGACTTCTCTTCGGGTTTATTTGTCAAGTTTGCCAGCAATTAGAGAGCTGATTGTTTTGCAATATACATATGATTGCTATGGTTGTATGAAAATGTGTAGTGGTGGATTAGGTTTTCCTAACATCATTATGGTCACAATGATTGTCTGAAGATTTATGCATTTCTCACTCTCCCATGGATAGGTGTCCCCAGAGCAGTTTGGGCTTTTATTTAGCTTTTGGAGAGGGGTGCAAAGGTGGTGGAATTGATGCAAAAGACACTAGGAATGTGTCTGTGTGGGGTATGGGTTGCCATTTATAGTCAAATATAGGATAGGCTCTTCACATTTACCATTCGAAACTAACACGTGTCTTGTCGGAGATTTTCCTTTTTGGCAAAAAGGGAGTTGGATACCATATGATGAGCTCACACATAACCTATAAATCGGACTCTATTAGAGCAATGATGTAAGTCTGCGCATCTGTTTCCTGGAAATTTGTTAACCCTTGTTTAGTTATTGCAAATTACAGTGTCTCTGTGGTGCCATGAGTTGTGAAGGTGTTTCTAGTGTATCCATTAGAAAAAGAACAGAGGATGCTTATTATGCGCACAATGTCATGACTCTGCTTGTAATTGTTGAAGCTACAGACTAATAACTGGGTTGCTCAGACATATCAGTTTGAAAATACCAACTTAAGTTGTTGGTGCCCCATTCATAATGTTAGAAAAATAGGAAGAGTTAGAGATAAACAATATATTAAGCGAATTTTCTAGTCTGTTAGTGCCATTTTGAGCTGGTAGGAAGACTACTAATTATTTATTTTATGTTTGAAAAATGAAAGGTGAGAAAACTATGACTTATGAGAGAGTTGTTGCTCTATTGAGTCAATTTGGAGGAAAGTTTATCCTTGTTCTTTTAGATACTTCCCTTTATATGATAAATAGAAAATGAAATTCCTATGCGACTACATTACTGCAAAATCTATGTTTGAATGTTTGGAACATCACCCATATGATTTTTGTATTGAAGAACTATTGACTAACATGTAGCTGTCCTCGTCCTTGCAGGTCACCTCGTAGTCATCGTTCTAGAAGTCCCAGGAGGAGATTCTAGTTCTATGCACACACCTATTTGCAAGGATTATGTCACTGACTTCTAGAGATCAGGCTCTATGAATTCCTGGTCTATGCTGT</genome_strand>
        <mrna_strand>AGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTGGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCACCGATGCCAAAGCTGAAATCAGCCATTACAGGTGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGGGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGATTTGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTCTGGATTTGTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................GGTTATGCACTTATTGAATATGAAAACTTTGAAGAAGCAGAGAGAGCTATTAGTGAAATGGATGGGAATGAGCTGCTAACTCAGACTATACATGTTGATTGGGCATTCAGCAAAGGTCCTTTTAGAAGGAGAAATGTTAGGAGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACCTCGTAGTCATCGTTCTAGAAGTCCCAGGAGGAGATTCTAGTTCTATGCACACACCTATTTGCAAGGATTATGTCACTGACTTCTAGAGATCAGGCTCTATGAATTCCTGGTCTATGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576418" ref_strand="+" ref_description="SGN-E576418 [59633]">
      <seq>aaattctctctttttgcagcggcgaaaatggcgaacccggaggaggctgtcgatttcgagccagaggaagacgatctgatggacgaagacgttgacgcttcatcacctagggcatcgatgccaaagctgaaatcagccattacaagcggcggcggcggttcttctgcttctaagaaaatcaaaggacgtggtttccgtgaagagactgctgaggctgaaaggaatgctcgcctttctgctcgttttgattctcttgactccgaaggtggccctggacctgaacgatccattgaaggatggattgttttagtcactggagttaatgaggaggcacaagaagatgatcttcataatacatttggtgagttcggggagatcaagaatttgcatttgaatctggatcgtcgttctggatttgtcaagggttatgcacttattgaatatgagaactttgaagaagcagagagagctatcagtgaaatggatgggaatgagctgctcactcagactattcatgttgattgggcattcagcaaaggtccttttagaaggagaaatgctaggaggaggtcaccacgtagtcatcgttctagaagtcccaggaggagattctagttctacgcacacctatttgcaaggattgtgtcactgacttctagagatcaggctctatgaatgcctggtctatgctgtaattccatgtgtacgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80549" stop="75411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80251" g_stop="79963" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79962" i_stop="78412" i_length="1551">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.156" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78411" g_stop="78275" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="423" r_length="137" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78274" i_stop="77885" i_length="390">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77884" g_stop="77739" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="569" r_length="146" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77738" i_stop="75838" i_length="1901">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75837" g_stop="75714" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="691" r_length="122" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E576418" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E576418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80251" e_stop="79963"/>
          <exon e_start="78411" e_stop="78275"/>
          <exon e_start="77884" e_stop="77739"/>
          <exon e_start="75837" e_stop="75714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTCTCTCTTTTTGCTGCAGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTGGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCACCGATGCCAAAGCTGAAATCAGCCATTACAGGTGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGGGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGATTTGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGATGTTAGTTTCTACTCTTAACTCATCTTTTATATAACCCAACGAACTTTCTACCTCATTTTTTTCTTTTTTTTTTTAGAATTTTGTTCAAATTAGGGGAAAATGTTGCAGTGGGTCAACAATTCATCAAAACCCCAGATTCTCTCTTTGTGCGCTGGTGTTAAAGAATTGTTACCTATAATTGTTTTCTCTATGATTTTGTGACGGGAGGTTGATAGTTGGGGTAATGGGTAAAGTGTCTTAAGGAAATGTTTTAGTCTGGTTAGAGACTTCTAATTAAGAGAATATCTAGGTTTAGGATGTCTTAATTTTAACAGGTTAAAAATTGCTTATTCTTATAATTGTTTTTCTTTTGGTTTTTGTGTTATGAATAAAGAAAACTGCTACAGGTTGGTAATCCGCGTAATGTAATGACCCTCGAAGGAGTGTGTTTAGTTTGGTTTACAGTGTTGAATCTAGAGAACATCTAACTTTAGAAGACTAACATTGAACACTCAAGTGTTGACCCTGTTATCTTTAGAGTTTTTTCACGAGGTGCTTTTATGGTTTTATTGAGTGTATTTAGTATACTTTCTAGTTTTGGTTTAATTTGTTATCTGTTATTGATTAGTTGAACGATATTAAATTGCTTTTGTGAATGAGACCATGTTAAGGTTTCACCTACATTGTATAAGCAAGCAGAATTAGAGAAGTGAATAAAGAAGTTAGGACCTACTGCTAGTAGAAGTTGATTTTGTTCATCTGTGTGAAGAAAAGCAACTAGAGAAAGGAACACTCAAATATTGCTTGTACTCATCTTCAAGTTGTTAGGACCCTGTAACGGTATCTAGAAAGTGGAATAACTTGAAGATAATTAAGTCGAGGTCTTTTTTTGTCAAAAAAAATAATTAAGTTGAGGTCTTCATTTTCAGAAAGAGTGGAAAGATCGTGAAATAGGGTAAAATGTTTGTACTTAATGTATATCTGTGCTGTTTGGTCCCCTCCTCTAGCCATTGTGCTTATAAGCCTCCGCCCTCCAGCTTCGTGTTCTTTACATTATAAATGTGCTAACCAGTTGGATTGGGTTCCAGCTATTACTTTATTTACATCTAAGAAGCACGTAATGGTAGGCTGTATATTTGTCACTTTATCATTGTTGCTTAGCTTTTAGAGAGAGCTAGCTTTGTATAGCTAATGCAACTTACCCTCCAACGGCTCAGCTTGGTCTTCAGCACTTGCTGTCGGAGAAATTGGCCAACAGAATCTAATATGCTGATTTCAGTCGTAGATATTAGTTGTTTGATTGCTGGGTCACCAGCACTTCAAGTAATATGTAATTTGTGCTGGGTATCTCAGATATTTTTCAAGTTATGCAATTCTAATGTAATAAAAATCCCAAAATGTCTGATAGGTGCTGATTCAGACATGCATGGTGTCCCCCCCCCCCCCCCCCTCTTTTTTTTTTTTTTCTTTTCTTCAATATATATATATATATATATATTTGAAGTTACCGGTAAGGTTAATAAAGGTTTAGTTTAATTAGTAGTAGAGAGCTAATGAGGGGAACATCTGCAGCCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTCTGGATTTGTCAAGGTGAACTGACTCTTTCTTTCTCGGAATGTTTAGCTGCTTGCCTGCTTCTTTGGGTTTTGGGTGTTGTACATATGATGCTATATGAATTGCATCCCCATTGTATGCTTTAATCTAATAAACTTTCCTATCAAAAGATTTTGGATGATGACAAAATTCTTTTGATCAAGAAAAATTTGTTGAAGTTTATAAGTGACAGACATTCCTTCTTCCATATAACTATGTAAGAGCATTTCCTTGAATGAATCTGTAATGGAGTAAAATGGAATAAAATAGGATCAATGCTATGTTAATTATGAAGGATTCTAGATAGATACTTTTCTTTGTTTTAAGTTTCAACTTTTGTCGTAGTTTGGAGTGGTATAGTTTTTATACAGTTTTCCATTTTGACAGGGTTATGCACTTATTGAATATGAAAACTTTGAAGAAGCAGAGAGAGCTATTAGTGAAATGGATGGGAATGAGCTGCTAACTCAGACTATACATGTTGATTGGGCATTCAGCAAAGGTCCTTTTAGAAGGAGAAATGTTAGGAGGAGGTATTTTTCTTGGTTAATCCAATTAACATAATTTTGTGTAGAATAGCTGTGAAAAAATGTTGCCTGAATCAAGGATACACTTTTTCACTTTTAATCAATGTTGGCAAATGTTCCTTCAGAAGCATAGATTTACCCTCTTGACAAAAAGTCGGGGCCTTCAAATTATTTTCAGAGATTGGAATAGCTACTTCTTAAACATTTGCAACTGGATTAATGTTATGACGTCTGTAATTGTTTTCTTGCGAACTGTTTCACTATAATATATGTCGTTTATTGTATTGCCTTCAACTCCGTAGGAGTGGAATTGTCACTGGCCTCCCTCATGTTTTTGTTGATAAAAGTTACCAGCCCATTTCCTGTAATTCATGATTCAGCTGTCAGTTATGTGTGTGTGGGATCAATAATAACCACCTATTACTAAGACTCCCTTTTATTTAAACGTCTGGCAGCTGAATAGCCTGTGGATCAATATTATCTTAAATTTTTGCCTCATCTTTTATTCTTTTACGTTATAGTAGTTTTTTAATTCTATCAAAGCATTTCTCTGTGGAGGTGATGGACAGTGTATCCTTCAGTCGCTTAAATTCTCTTTTTTGCTCCCTGTTTTCTGAGGGTATGCATAATTGTTTGATTTATTTCCTTTTGCTGTTAATCTAGTTTCGGCCAAATCCCAGCTGAGATCATTGAATTAGGTTTCCTATTGATCATATTGTAGGCAAAAATTGATAACTTATCCCTCAATACATAGCTAGAAAAGTTCCAAATTGTTTAGCAGAAGTTTGAGTAGGATTAGCTCAATGATAAATACCAGTTCTCTGCAGCCTTATTTAGTAGACTAACTGCAAATTCTTATCAGACTTCTCTTCGGGTTTATTTGTCAAGTTTGCCAGCAATTAGAGAGCTGATTGTTTTGCAATATACATATGATTGCTATGGTTGTATGAAAATGTGTAGTGGTGGATTAGGTTTTCCTAACATCATTATGGTCACAATGATTGTCTGAAGATTTATGCATTTCTCACTCTCCCATGGATAGGTGTCCCCAGAGCAGTTTGGGCTTTTATTTAGCTTTTGGAGAGGGGTGCAAAGGTGGTGGAATTGATGCAAAAGACACTAGGAATGTGTCTGTGTGGGGTATGGGTTGCCATTTATAGTCAAATATAGGATAGGCTCTTCACATTTACCATTCGAAACTAACACGTGTCTTGTCGGAGATTTTCCTTTTTGGCAAAAAGGGAGTTGGATACCATATGATGAGCTCACACATAACCTATAAATCGGACTCTATTAGAGCAATGATGTAAGTCTGCGCATCTGTTTCCTGGAAATTTGTTAACCCTTGTTTAGTTATTGCAAATTACAGTGTCTCTGTGGTGCCATGAGTTGTGAAGGTGTTTCTAGTGTATCCATTAGAAAAAGAACAGAGGATGCTTATTATGCGCACAATGTCATGACTCTGCTTGTAATTGTTGAAGCTACAGACTAATAACTGGGTTGCTCAGACATATCAGTTTGAAAATACCAACTTAAGTTGTTGGTGCCCCATTCATAATGTTAGAAAAATAGGAAGAGTTAGAGATAAACAATATATTAAGCGAATTTTCTAGTCTGTTAGTGCCATTTTGAGCTGGTAGGAAGACTACTAATTATTTATTTTATGTTTGAAAAATGAAAGGTGAGAAAACTATGACTTATGAGAGAGTTGTTGCTCTATTGAGTCAATTTGGAGGAAAGTTTATCCTTGTTCTTTTAGATACTTCCCTTTATATGATAAATAGAAAATGAAATTCCTATGCGACTACATTACTGCAAAATCTATGTTTGAATGTTTGGAACATCACCCATATGATTTTTGTATTGAAGAACTATTGACTAACATGTAGCTGTCCTCGTCCTTGCAGGTCACCTCGTAGTCATCGTTCTAGAAGTCCCAGGAGGAGATTCTAGTTCTATGCACACACCTATTTGCAAGGATTATGTCACTGACTTCTAGAGATCAGGCTCTATGAATTCCTGGTCTATGCT</genome_strand>
        <mrna_strand>AAATTCTCTC-TTTT--TGCAGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTCGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCATCGATGCCAAAGCTGAAATCAGCCATTACAAGCGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGTGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGTTTTGATTCTCTTGACTCCGAAGGTGGCCCTGGACCTGAACGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGAAGGATGGATTGTTTTAGTCACTGGAGTTAATGAGGAGGCACAAGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTCTGGATTTGTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................GGTTATGCACTTATTGAATATGAGAACTTTGAAGAAGCAGAGAGAGCTATCAGTGAAATGGATGGGAATGAGCTGCTCACTCAGACTATTCATGTTGATTGGGCATTCAGCAAAGGTCCTTTTAGAAGGAGAAATGCTAGGAGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACCACGTAGTCATCGTTCTAGAAGTCCCAGGAGGAGATTCTAGTTCTA--CGCACACCTATTTGCAAGGATTGTGTCACTGACTTCTAGAGATCAGGCTCTATGAATGCCTGGTCTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343396" ref_strand="+" ref_description="SGN-E343396 [cTOF-19-I8]">
      <seq>ctgcagcggcgaaaatggcgaacccggaggaggctgtggatttcgagccagaggaagacgatctgatggacgaagacgttgacgcttcatcacctagggcaccgatgccaaagctgaaatcagccattacaggtggcggcggcggttcttctgcttctaagaaaatcaaaggacggggtttccgtgaagagactgctgaggctgaaaggaatgctcgcctttctgctcgatttgattcacttgactccgaaggtggccctggacctgaacgatccattgaaggatggattattttagtcactggagtcaatgaggaggcacacgaagatgatcttcataatacatttggtgagttcggggagatcaagaatttgcatttgaatctggatcgtcgttctggatttgtcaagggttatgcacttattgaatatgaaaactttgaagaagcagagagagctattagtgaaatggatgggaatgagctgctaactcagactatacatgttgattgggcattcagcaaaggtccttttagaaggagaaatgttaggaggaggtcacctcgtagtcatcgttctagaagtcccaggaggagattctagttctatgcacacacctatttgcaaggattatgtcactgacttctagagatcaagctctatgaattcctggtctatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80535" stop="75414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80235" g_stop="79963" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79962" i_stop="78412" i_length="1551">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.156" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78411" g_stop="78275" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="410" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78274" i_stop="77885" i_length="390">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77884" g_stop="77739" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="556" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77738" i_stop="75838" i_length="1901">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75837" g_stop="75714" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="680" r_length="124" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E343396" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80235" e_stop="79963"/>
          <exon e_start="78411" e_stop="78275"/>
          <exon e_start="77884" e_stop="77739"/>
          <exon e_start="75837" e_stop="75714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTGGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCACCGATGCCAAAGCTGAAATCAGCCATTACAGGTGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGGGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGATTTGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGATGTTAGTTTCTACTCTTAACTCATCTTTTATATAACCCAACGAACTTTCTACCTCATTTTTTTCTTTTTTTTTTTAGAATTTTGTTCAAATTAGGGGAAAATGTTGCAGTGGGTCAACAATTCATCAAAACCCCAGATTCTCTCTTTGTGCGCTGGTGTTAAAGAATTGTTACCTATAATTGTTTTCTCTATGATTTTGTGACGGGAGGTTGATAGTTGGGGTAATGGGTAAAGTGTCTTAAGGAAATGTTTTAGTCTGGTTAGAGACTTCTAATTAAGAGAATATCTAGGTTTAGGATGTCTTAATTTTAACAGGTTAAAAATTGCTTATTCTTATAATTGTTTTTCTTTTGGTTTTTGTGTTATGAATAAAGAAAACTGCTACAGGTTGGTAATCCGCGTAATGTAATGACCCTCGAAGGAGTGTGTTTAGTTTGGTTTACAGTGTTGAATCTAGAGAACATCTAACTTTAGAAGACTAACATTGAACACTCAAGTGTTGACCCTGTTATCTTTAGAGTTTTTTCACGAGGTGCTTTTATGGTTTTATTGAGTGTATTTAGTATACTTTCTAGTTTTGGTTTAATTTGTTATCTGTTATTGATTAGTTGAACGATATTAAATTGCTTTTGTGAATGAGACCATGTTAAGGTTTCACCTACATTGTATAAGCAAGCAGAATTAGAGAAGTGAATAAAGAAGTTAGGACCTACTGCTAGTAGAAGTTGATTTTGTTCATCTGTGTGAAGAAAAGCAACTAGAGAAAGGAACACTCAAATATTGCTTGTACTCATCTTCAAGTTGTTAGGACCCTGTAACGGTATCTAGAAAGTGGAATAACTTGAAGATAATTAAGTCGAGGTCTTTTTTTGTCAAAAAAAATAATTAAGTTGAGGTCTTCATTTTCAGAAAGAGTGGAAAGATCGTGAAATAGGGTAAAATGTTTGTACTTAATGTATATCTGTGCTGTTTGGTCCCCTCCTCTAGCCATTGTGCTTATAAGCCTCCGCCCTCCAGCTTCGTGTTCTTTACATTATAAATGTGCTAACCAGTTGGATTGGGTTCCAGCTATTACTTTATTTACATCTAAGAAGCACGTAATGGTAGGCTGTATATTTGTCACTTTATCATTGTTGCTTAGCTTTTAGAGAGAGCTAGCTTTGTATAGCTAATGCAACTTACCCTCCAACGGCTCAGCTTGGTCTTCAGCACTTGCTGTCGGAGAAATTGGCCAACAGAATCTAATATGCTGATTTCAGTCGTAGATATTAGTTGTTTGATTGCTGGGTCACCAGCACTTCAAGTAATATGTAATTTGTGCTGGGTATCTCAGATATTTTTCAAGTTATGCAATTCTAATGTAATAAAAATCCCAAAATGTCTGATAGGTGCTGATTCAGACATGCATGGTGTCCCCCCCCCCCCCCCCCTCTTTTTTTTTTTTTTCTTTTCTTCAATATATATATATATATATATATTTGAAGTTACCGGTAAGGTTAATAAAGGTTTAGTTTAATTAGTAGTAGAGAGCTAATGAGGGGAACATCTGCAGCCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTCTGGATTTGTCAAGGTGAACTGACTCTTTCTTTCTCGGAATGTTTAGCTGCTTGCCTGCTTCTTTGGGTTTTGGGTGTTGTACATATGATGCTATATGAATTGCATCCCCATTGTATGCTTTAATCTAATAAACTTTCCTATCAAAAGATTTTGGATGATGACAAAATTCTTTTGATCAAGAAAAATTTGTTGAAGTTTATAAGTGACAGACATTCCTTCTTCCATATAACTATGTAAGAGCATTTCCTTGAATGAATCTGTAATGGAGTAAAATGGAATAAAATAGGATCAATGCTATGTTAATTATGAAGGATTCTAGATAGATACTTTTCTTTGTTTTAAGTTTCAACTTTTGTCGTAGTTTGGAGTGGTATAGTTTTTATACAGTTTTCCATTTTGACAGGGTTATGCACTTATTGAATATGAAAACTTTGAAGAAGCAGAGAGAGCTATTAGTGAAATGGATGGGAATGAGCTGCTAACTCAGACTATACATGTTGATTGGGCATTCAGCAAAGGTCCTTTTAGAAGGAGAAATGTTAGGAGGAGGTATTTTTCTTGGTTAATCCAATTAACATAATTTTGTGTAGAATAGCTGTGAAAAAATGTTGCCTGAATCAAGGATACACTTTTTCACTTTTAATCAATGTTGGCAAATGTTCCTTCAGAAGCATAGATTTACCCTCTTGACAAAAAGTCGGGGCCTTCAAATTATTTTCAGAGATTGGAATAGCTACTTCTTAAACATTTGCAACTGGATTAATGTTATGACGTCTGTAATTGTTTTCTTGCGAACTGTTTCACTATAATATATGTCGTTTATTGTATTGCCTTCAACTCCGTAGGAGTGGAATTGTCACTGGCCTCCCTCATGTTTTTGTTGATAAAAGTTACCAGCCCATTTCCTGTAATTCATGATTCAGCTGTCAGTTATGTGTGTGTGGGATCAATAATAACCACCTATTACTAAGACTCCCTTTTATTTAAACGTCTGGCAGCTGAATAGCCTGTGGATCAATATTATCTTAAATTTTTGCCTCATCTTTTATTCTTTTACGTTATAGTAGTTTTTTAATTCTATCAAAGCATTTCTCTGTGGAGGTGATGGACAGTGTATCCTTCAGTCGCTTAAATTCTCTTTTTTGCTCCCTGTTTTCTGAGGGTATGCATAATTGTTTGATTTATTTCCTTTTGCTGTTAATCTAGTTTCGGCCAAATCCCAGCTGAGATCATTGAATTAGGTTTCCTATTGATCATATTGTAGGCAAAAATTGATAACTTATCCCTCAATACATAGCTAGAAAAGTTCCAAATTGTTTAGCAGAAGTTTGAGTAGGATTAGCTCAATGATAAATACCAGTTCTCTGCAGCCTTATTTAGTAGACTAACTGCAAATTCTTATCAGACTTCTCTTCGGGTTTATTTGTCAAGTTTGCCAGCAATTAGAGAGCTGATTGTTTTGCAATATACATATGATTGCTATGGTTGTATGAAAATGTGTAGTGGTGGATTAGGTTTTCCTAACATCATTATGGTCACAATGATTGTCTGAAGATTTATGCATTTCTCACTCTCCCATGGATAGGTGTCCCCAGAGCAGTTTGGGCTTTTATTTAGCTTTTGGAGAGGGGTGCAAAGGTGGTGGAATTGATGCAAAAGACACTAGGAATGTGTCTGTGTGGGGTATGGGTTGCCATTTATAGTCAAATATAGGATAGGCTCTTCACATTTACCATTCGAAACTAACACGTGTCTTGTCGGAGATTTTCCTTTTTGGCAAAAAGGGAGTTGGATACCATATGATGAGCTCACACATAACCTATAAATCGGACTCTATTAGAGCAATGATGTAAGTCTGCGCATCTGTTTCCTGGAAATTTGTTAACCCTTGTTTAGTTATTGCAAATTACAGTGTCTCTGTGGTGCCATGAGTTGTGAAGGTGTTTCTAGTGTATCCATTAGAAAAAGAACAGAGGATGCTTATTATGCGCACAATGTCATGACTCTGCTTGTAATTGTTGAAGCTACAGACTAATAACTGGGTTGCTCAGACATATCAGTTTGAAAATACCAACTTAAGTTGTTGGTGCCCCATTCATAATGTTAGAAAAATAGGAAGAGTTAGAGATAAACAATATATTAAGCGAATTTTCTAGTCTGTTAGTGCCATTTTGAGCTGGTAGGAAGACTACTAATTATTTATTTTATGTTTGAAAAATGAAAGGTGAGAAAACTATGACTTATGAGAGAGTTGTTGCTCTATTGAGTCAATTTGGAGGAAAGTTTATCCTTGTTCTTTTAGATACTTCCCTTTATATGATAAATAGAAAATGAAATTCCTATGCGACTACATTACTGCAAAATCTATGTTTGAATGTTTGGAACATCACCCATATGATTTTTGTATTGAAGAACTATTGACTAACATGTAGCTGTCCTCGTCCTTGCAGGTCACCTCGTAGTCATCGTTCTAGAAGTCCCAGGAGGAGATTCTAGTTCTATGCACACACCTATTTGCAAGGATTATGTCACTGACTTCTAGAGATCAGGCTCTATGAATTCCTGGTCTATGCT</genome_strand>
        <mrna_strand>CTGCAGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTGGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCACCGATGCCAAAGCTGAAATCAGCCATTACAGGTGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGGGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGATTTGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTCTGGATTTGTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................GGTTATGCACTTATTGAATATGAAAACTTTGAAGAAGCAGAGAGAGCTATTAGTGAAATGGATGGGAATGAGCTGCTAACTCAGACTATACATGTTGATTGGGCATTCAGCAAAGGTCCTTTTAGAAGGAGAAATGTTAGGAGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACCTCGTAGTCATCGTTCTAGAAGTCCCAGGAGGAGATTCTAGTTCTATGCACACACCTATTTGCAAGGATTATGTCACTGACTTCTAGAGATCAAGCTCTATGAATTCCTGGTCTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480054" ref_strand="+" ref_description="SGN-E480054 [cSTD-12-M14]">
      <seq>ttacaagcggcggcggtggttcttcttgcttctaagaaaatcaaaggaccgtggtttccgtgaagagactgctgaggctgaaaggaatgcctcgcctttctgctcgttttgattctcttgactccgaaggtggccctggacctgaaccgatccattgaaggatggattgttttagtcactggagttaatgaggaggcacaagaagatgatcttcataatacatttggtgagttcggggagatcaagaatttgcatttgaatctggatcgtcgttctggatttgtcaagggttatgcacttattgaatatgagaactttgaagaagcagagagagctatcagtgaaatggatgggaatgagctgctcactcagactantcatgttgattgggcattcagcaaaggtccttttagagggagaaatgctaggaggaggtcaccacgtagtcatcgttctagaagtcccaggaggagattctagttctacgcacacctatttgcagggattgtgtcactgaccttctagagatcangctctatgaatncctggtctatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80409" stop="75414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80109" g_stop="79963" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79962" i_stop="78412" i_length="1551">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.156" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78411" g_stop="78275" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="288" r_length="137" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78274" i_stop="77885" i_length="390">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77884" g_stop="77739" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="434" r_length="146" r_score="0.952"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77738" i_stop="75838" i_length="1901">
            <donor d_prob="0.970" d_score="0.96"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75837" g_stop="75714" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="557" r_length="123" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E480054" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E480054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80109" e_stop="79963"/>
          <exon e_start="78411" e_stop="78275"/>
          <exon e_start="77884" e_stop="77739"/>
          <exon e_start="75837" e_stop="75714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAGGTGGCGGCGGCGGTTCTTC-TGCTTCTAAGAAAATCAAAGGA-CGGGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGC-TCGCCTTTCTGCTCGATTTGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAA-CGATGTTAGTTTCTACTCTTAACTCATCTTTTATATAACCCAACGAACTTTCTACCTCATTTTTTTCTTTTTTTTTTTAGAATTTTGTTCAAATTAGGGGAAAATGTTGCAGTGGGTCAACAATTCATCAAAACCCCAGATTCTCTCTTTGTGCGCTGGTGTTAAAGAATTGTTACCTATAATTGTTTTCTCTATGATTTTGTGACGGGAGGTTGATAGTTGGGGTAATGGGTAAAGTGTCTTAAGGAAATGTTTTAGTCTGGTTAGAGACTTCTAATTAAGAGAATATCTAGGTTTAGGATGTCTTAATTTTAACAGGTTAAAAATTGCTTATTCTTATAATTGTTTTTCTTTTGGTTTTTGTGTTATGAATAAAGAAAACTGCTACAGGTTGGTAATCCGCGTAATGTAATGACCCTCGAAGGAGTGTGTTTAGTTTGGTTTACAGTGTTGAATCTAGAGAACATCTAACTTTAGAAGACTAACATTGAACACTCAAGTGTTGACCCTGTTATCTTTAGAGTTTTTTCACGAGGTGCTTTTATGGTTTTATTGAGTGTATTTAGTATACTTTCTAGTTTTGGTTTAATTTGTTATCTGTTATTGATTAGTTGAACGATATTAAATTGCTTTTGTGAATGAGACCATGTTAAGGTTTCACCTACATTGTATAAGCAAGCAGAATTAGAGAAGTGAATAAAGAAGTTAGGACCTACTGCTAGTAGAAGTTGATTTTGTTCATCTGTGTGAAGAAAAGCAACTAGAGAAAGGAACACTCAAATATTGCTTGTACTCATCTTCAAGTTGTTAGGACCCTGTAACGGTATCTAGAAAGTGGAATAACTTGAAGATAATTAAGTCGAGGTCTTTTTTTGTCAAAAAAAATAATTAAGTTGAGGTCTTCATTTTCAGAAAGAGTGGAAAGATCGTGAAATAGGGTAAAATGTTTGTACTTAATGTATATCTGTGCTGTTTGGTCCCCTCCTCTAGCCATTGTGCTTATAAGCCTCCGCCCTCCAGCTTCGTGTTCTTTACATTATAAATGTGCTAACCAGTTGGATTGGGTTCCAGCTATTACTTTATTTACATCTAAGAAGCACGTAATGGTAGGCTGTATATTTGTCACTTTATCATTGTTGCTTAGCTTTTAGAGAGAGCTAGCTTTGTATAGCTAATGCAACTTACCCTCCAACGGCTCAGCTTGGTCTTCAGCACTTGCTGTCGGAGAAATTGGCCAACAGAATCTAATATGCTGATTTCAGTCGTAGATATTAGTTGTTTGATTGCTGGGTCACCAGCACTTCAAGTAATATGTAATTTGTGCTGGGTATCTCAGATATTTTTCAAGTTATGCAATTCTAATGTAATAAAAATCCCAAAATGTCTGATAGGTGCTGATTCAGACATGCATGGTGTCCCCCCCCCCCCCCCCCTCTTTTTTTTTTTTTTCTTTTCTTCAATATATATATATATATATATATTTGAAGTTACCGGTAAGGTTAATAAAGGTTTAGTTTAATTAGTAGTAGAGAGCTAATGAGGGGAACATCTGCAGCCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTCTGGATTTGTCAAGGTGAACTGACTCTTTCTTTCTCGGAATGTTTAGCTGCTTGCCTGCTTCTTTGGGTTTTGGGTGTTGTACATATGATGCTATATGAATTGCATCCCCATTGTATGCTTTAATCTAATAAACTTTCCTATCAAAAGATTTTGGATGATGACAAAATTCTTTTGATCAAGAAAAATTTGTTGAAGTTTATAAGTGACAGACATTCCTTCTTCCATATAACTATGTAAGAGCATTTCCTTGAATGAATCTGTAATGGAGTAAAATGGAATAAAATAGGATCAATGCTATGTTAATTATGAAGGATTCTAGATAGATACTTTTCTTTGTTTTAAGTTTCAACTTTTGTCGTAGTTTGGAGTGGTATAGTTTTTATACAGTTTTCCATTTTGACAGGGTTATGCACTTATTGAATATGAAAACTTTGAAGAAGCAGAGAGAGCTATTAGTGAAATGGATGGGAATGAGCTGCTAACTCAGACTATACATGTTGATTGGGCATTCAGCAAAGGTCCTTTTAGAAGGAGAAATGTTAGGAGGAGGTATTTTTCTTGGTTAATCCAATTAACATAATTTTGTGTAGAATAGCTGTGAAAAAATGTTGCCTGAATCAAGGATACACTTTTTCACTTTTAATCAATGTTGGCAAATGTTCCTTCAGAAGCATAGATTTACCCTCTTGACAAAAAGTCGGGGCCTTCAAATTATTTTCAGAGATTGGAATAGCTACTTCTTAAACATTTGCAACTGGATTAATGTTATGACGTCTGTAATTGTTTTCTTGCGAACTGTTTCACTATAATATATGTCGTTTATTGTATTGCCTTCAACTCCGTAGGAGTGGAATTGTCACTGGCCTCCCTCATGTTTTTGTTGATAAAAGTTACCAGCCCATTTCCTGTAATTCATGATTCAGCTGTCAGTTATGTGTGTGTGGGATCAATAATAACCACCTATTACTAAGACTCCCTTTTATTTAAACGTCTGGCAGCTGAATAGCCTGTGGATCAATATTATCTTAAATTTTTGCCTCATCTTTTATTCTTTTACGTTATAGTAGTTTTTTAATTCTATCAAAGCATTTCTCTGTGGAGGTGATGGACAGTGTATCCTTCAGTCGCTTAAATTCTCTTTTTTGCTCCCTGTTTTCTGAGGGTATGCATAATTGTTTGATTTATTTCCTTTTGCTGTTAATCTAGTTTCGGCCAAATCCCAGCTGAGATCATTGAATTAGGTTTCCTATTGATCATATTGTAGGCAAAAATTGATAACTTATCCCTCAATACATAGCTAGAAAAGTTCCAAATTGTTTAGCAGAAGTTTGAGTAGGATTAGCTCAATGATAAATACCAGTTCTCTGCAGCCTTATTTAGTAGACTAACTGCAAATTCTTATCAGACTTCTCTTCGGGTTTATTTGTCAAGTTTGCCAGCAATTAGAGAGCTGATTGTTTTGCAATATACATATGATTGCTATGGTTGTATGAAAATGTGTAGTGGTGGATTAGGTTTTCCTAACATCATTATGGTCACAATGATTGTCTGAAGATTTATGCATTTCTCACTCTCCCATGGATAGGTGTCCCCAGAGCAGTTTGGGCTTTTATTTAGCTTTTGGAGAGGGGTGCAAAGGTGGTGGAATTGATGCAAAAGACACTAGGAATGTGTCTGTGTGGGGTATGGGTTGCCATTTATAGTCAAATATAGGATAGGCTCTTCACATTTACCATTCGAAACTAACACGTGTCTTGTCGGAGATTTTCCTTTTTGGCAAAAAGGGAGTTGGATACCATATGATGAGCTCACACATAACCTATAAATCGGACTCTATTAGAGCAATGATGTAAGTCTGCGCATCTGTTTCCTGGAAATTTGTTAACCCTTGTTTAGTTATTGCAAATTACAGTGTCTCTGTGGTGCCATGAGTTGTGAAGGTGTTTCTAGTGTATCCATTAGAAAAAGAACAGAGGATGCTTATTATGCGCACAATGTCATGACTCTGCTTGTAATTGTTGAAGCTACAGACTAATAACTGGGTTGCTCAGACATATCAGTTTGAAAATACCAACTTAAGTTGTTGGTGCCCCATTCATAATGTTAGAAAAATAGGAAGAGTTAGAGATAAACAATATATTAAGCGAATTTTCTAGTCTGTTAGTGCCATTTTGAGCTGGTAGGAAGACTACTAATTATTTATTTTATGTTTGAAAAATGAAAGGTGAGAAAACTATGACTTATGAGAGAGTTGTTGCTCTATTGAGTCAATTTGGAGGAAAGTTTATCCTTGTTCTTTTAGATACTTCCCTTTATATGATAAATAGAAAATGAAATTCCTATGCGACTACATTACTGCAAAATCTATGTTTGAATGTTTGGAACATCACCCATATGATTTTTGTATTGAAGAACTATTGACTAACATGTAGCTGTCCTCGTCCTTGCAGGTCACCTCGTAGTCATCGTTCTAGAAGTCCCAGGAGGAGATTCTAGTTCTATGCACACACCTATTTGCAAGGATTATGTCACTGA-CTTCTAGAGATCAGGCTCTATGAATTCCTGGTCTATGCT</genome_strand>
        <mrna_strand>TTACAAGCGGCGGCGGTGGTTCTTCTTGCTTCTAAGAAAATCAAAGGACCGTGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCCTCGCCTTTCTGCTCGTTTTGATTCTCTTGACTCCGAAGGTGGCCCTGGACCTGAACCGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGAAGGATGGATTGTTTTAGTCACTGGAGTTAATGAGGAGGCACAAGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTCTGGATTTGTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................GGTTATGCACTTATTGAATATGAGAACTTTGAAGAAGCAGAGAGAGCTATCAGTGAAATGGATGGGAATGAGCTGCTCACTCAGACTANTCATGTTGATTGGGCATTCAGCAAAGGTCCTTTTAGAGGGAGAAATGCTAGGAGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACCACGTAGTCATCGTTCTAGAAGTCCCAGGAGGAGATTCTAGTTCTA--CGCACACCTATTTGCAGGGATTGTGTCACTGACCTTCTAGAGATCANGCTCTATGAATNCCTGGTCTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729165" ref_strand="+" ref_description="SGN-E729165 [LA20AG08]">
      <seq>aatatatacagttgaaacaagcgaatcaaaaccccagattctctctttttgctgcagcggcgaaaatggcgaacccggaggaggctgtggatttcgagccagaggaagacgatctgatggacgaagacgttgacgcttcatcacctagggcaccgatgccaaagctgaaatcagccattacaggtggcggcggcggttcttctgcttctaagaaaatcaaaggacggggtttccgtgaagagactgctgaggctgaaaggaatgctcgcctttctgctcgatttgattcacttgactccgaaggtggccctggacctgaacgatccattgaaggatggattattttagtcactggagtcaatgaggaggcacacgaagatgatcttcataatacatttggtgagttcggggagatcaagaatttgcatttgaatctggatcgtcgttctggatttgtcaagggttatgcacttattgaatatgaaaactttgaagaagcagagagagctattagtgaaatggatgggaatgagctgctaactcagactatacatgttgattgggcattcagcaaaggtccttttacaaggagaaatgttaggaggaggtcacctcctcatcatcgttctagaagtcccaggagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80586" stop="75501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80286" g_stop="79963" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79962" i_stop="78412" i_length="1551">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.156" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78411" g_stop="78275" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="461" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78274" i_stop="77885" i_length="390">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77884" g_stop="77739" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="607" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77738" i_stop="75838" i_length="1901">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.950" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75837" g_stop="75801" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="644" r_length="37" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E729165" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80286" e_stop="79963"/>
          <exon e_start="78411" e_stop="78275"/>
          <exon e_start="77884" e_stop="77739"/>
          <exon e_start="75837" e_stop="75801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATATACAGTTGAAACAAGCGAATCAAAACCCCAGATTCTCTCTTTTTGCTGCAGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTGGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCACCGATGCCAAAGCTGAAATCAGCCATTACAGGTGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGGGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGATTTGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGATGTTAGTTTCTACTCTTAACTCATCTTTTATATAACCCAACGAACTTTCTACCTCATTTTTTTCTTTTTTTTTTTAGAATTTTGTTCAAATTAGGGGAAAATGTTGCAGTGGGTCAACAATTCATCAAAACCCCAGATTCTCTCTTTGTGCGCTGGTGTTAAAGAATTGTTACCTATAATTGTTTTCTCTATGATTTTGTGACGGGAGGTTGATAGTTGGGGTAATGGGTAAAGTGTCTTAAGGAAATGTTTTAGTCTGGTTAGAGACTTCTAATTAAGAGAATATCTAGGTTTAGGATGTCTTAATTTTAACAGGTTAAAAATTGCTTATTCTTATAATTGTTTTTCTTTTGGTTTTTGTGTTATGAATAAAGAAAACTGCTACAGGTTGGTAATCCGCGTAATGTAATGACCCTCGAAGGAGTGTGTTTAGTTTGGTTTACAGTGTTGAATCTAGAGAACATCTAACTTTAGAAGACTAACATTGAACACTCAAGTGTTGACCCTGTTATCTTTAGAGTTTTTTCACGAGGTGCTTTTATGGTTTTATTGAGTGTATTTAGTATACTTTCTAGTTTTGGTTTAATTTGTTATCTGTTATTGATTAGTTGAACGATATTAAATTGCTTTTGTGAATGAGACCATGTTAAGGTTTCACCTACATTGTATAAGCAAGCAGAATTAGAGAAGTGAATAAAGAAGTTAGGACCTACTGCTAGTAGAAGTTGATTTTGTTCATCTGTGTGAAGAAAAGCAACTAGAGAAAGGAACACTCAAATATTGCTTGTACTCATCTTCAAGTTGTTAGGACCCTGTAACGGTATCTAGAAAGTGGAATAACTTGAAGATAATTAAGTCGAGGTCTTTTTTTGTCAAAAAAAATAATTAAGTTGAGGTCTTCATTTTCAGAAAGAGTGGAAAGATCGTGAAATAGGGTAAAATGTTTGTACTTAATGTATATCTGTGCTGTTTGGTCCCCTCCTCTAGCCATTGTGCTTATAAGCCTCCGCCCTCCAGCTTCGTGTTCTTTACATTATAAATGTGCTAACCAGTTGGATTGGGTTCCAGCTATTACTTTATTTACATCTAAGAAGCACGTAATGGTAGGCTGTATATTTGTCACTTTATCATTGTTGCTTAGCTTTTAGAGAGAGCTAGCTTTGTATAGCTAATGCAACTTACCCTCCAACGGCTCAGCTTGGTCTTCAGCACTTGCTGTCGGAGAAATTGGCCAACAGAATCTAATATGCTGATTTCAGTCGTAGATATTAGTTGTTTGATTGCTGGGTCACCAGCACTTCAAGTAATATGTAATTTGTGCTGGGTATCTCAGATATTTTTCAAGTTATGCAATTCTAATGTAATAAAAATCCCAAAATGTCTGATAGGTGCTGATTCAGACATGCATGGTGTCCCCCCCCCCCCCCCCCTCTTTTTTTTTTTTTTCTTTTCTTCAATATATATATATATATATATATTTGAAGTTACCGGTAAGGTTAATAAAGGTTTAGTTTAATTAGTAGTAGAGAGCTAATGAGGGGAACATCTGCAGCCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTCTGGATTTGTCAAGGTGAACTGACTCTTTCTTTCTCGGAATGTTTAGCTGCTTGCCTGCTTCTTTGGGTTTTGGGTGTTGTACATATGATGCTATATGAATTGCATCCCCATTGTATGCTTTAATCTAATAAACTTTCCTATCAAAAGATTTTGGATGATGACAAAATTCTTTTGATCAAGAAAAATTTGTTGAAGTTTATAAGTGACAGACATTCCTTCTTCCATATAACTATGTAAGAGCATTTCCTTGAATGAATCTGTAATGGAGTAAAATGGAATAAAATAGGATCAATGCTATGTTAATTATGAAGGATTCTAGATAGATACTTTTCTTTGTTTTAAGTTTCAACTTTTGTCGTAGTTTGGAGTGGTATAGTTTTTATACAGTTTTCCATTTTGACAGGGTTATGCACTTATTGAATATGAAAACTTTGAAGAAGCAGAGAGAGCTATTAGTGAAATGGATGGGAATGAGCTGCTAACTCAGACTATACATGTTGATTGGGCATTCAGCAAAGGTCCTTTTAGAAGGAGAAATGTTAGGAGGAGGTATTTTTCTTGGTTAATCCAATTAACATAATTTTGTGTAGAATAGCTGTGAAAAAATGTTGCCTGAATCAAGGATACACTTTTTCACTTTTAATCAATGTTGGCAAATGTTCCTTCAGAAGCATAGATTTACCCTCTTGACAAAAAGTCGGGGCCTTCAAATTATTTTCAGAGATTGGAATAGCTACTTCTTAAACATTTGCAACTGGATTAATGTTATGACGTCTGTAATTGTTTTCTTGCGAACTGTTTCACTATAATATATGTCGTTTATTGTATTGCCTTCAACTCCGTAGGAGTGGAATTGTCACTGGCCTCCCTCATGTTTTTGTTGATAAAAGTTACCAGCCCATTTCCTGTAATTCATGATTCAGCTGTCAGTTATGTGTGTGTGGGATCAATAATAACCACCTATTACTAAGACTCCCTTTTATTTAAACGTCTGGCAGCTGAATAGCCTGTGGATCAATATTATCTTAAATTTTTGCCTCATCTTTTATTCTTTTACGTTATAGTAGTTTTTTAATTCTATCAAAGCATTTCTCTGTGGAGGTGATGGACAGTGTATCCTTCAGTCGCTTAAATTCTCTTTTTTGCTCCCTGTTTTCTGAGGGTATGCATAATTGTTTGATTTATTTCCTTTTGCTGTTAATCTAGTTTCGGCCAAATCCCAGCTGAGATCATTGAATTAGGTTTCCTATTGATCATATTGTAGGCAAAAATTGATAACTTATCCCTCAATACATAGCTAGAAAAGTTCCAAATTGTTTAGCAGAAGTTTGAGTAGGATTAGCTCAATGATAAATACCAGTTCTCTGCAGCCTTATTTAGTAGACTAACTGCAAATTCTTATCAGACTTCTCTTCGGGTTTATTTGTCAAGTTTGCCAGCAATTAGAGAGCTGATTGTTTTGCAATATACATATGATTGCTATGGTTGTATGAAAATGTGTAGTGGTGGATTAGGTTTTCCTAACATCATTATGGTCACAATGATTGTCTGAAGATTTATGCATTTCTCACTCTCCCATGGATAGGTGTCCCCAGAGCAGTTTGGGCTTTTATTTAGCTTTTGGAGAGGGGTGCAAAGGTGGTGGAATTGATGCAAAAGACACTAGGAATGTGTCTGTGTGGGGTATGGGTTGCCATTTATAGTCAAATATAGGATAGGCTCTTCACATTTACCATTCGAAACTAACACGTGTCTTGTCGGAGATTTTCCTTTTTGGCAAAAAGGGAGTTGGATACCATATGATGAGCTCACACATAACCTATAAATCGGACTCTATTAGAGCAATGATGTAAGTCTGCGCATCTGTTTCCTGGAAATTTGTTAACCCTTGTTTAGTTATTGCAAATTACAGTGTCTCTGTGGTGCCATGAGTTGTGAAGGTGTTTCTAGTGTATCCATTAGAAAAAGAACAGAGGATGCTTATTATGCGCACAATGTCATGACTCTGCTTGTAATTGTTGAAGCTACAGACTAATAACTGGGTTGCTCAGACATATCAGTTTGAAAATACCAACTTAAGTTGTTGGTGCCCCATTCATAATGTTAGAAAAATAGGAAGAGTTAGAGATAAACAATATATTAAGCGAATTTTCTAGTCTGTTAGTGCCATTTTGAGCTGGTAGGAAGACTACTAATTATTTATTTTATGTTTGAAAAATGAAAGGTGAGAAAACTATGACTTATGAGAGAGTTGTTGCTCTATTGAGTCAATTTGGAGGAAAGTTTATCCTTGTTCTTTTAGATACTTCCCTTTATATGATAAATAGAAAATGAAATTCCTATGCGACTACATTACTGCAAAATCTATGTTTGAATGTTTGGAACATCACCCATATGATTTTTGTATTGAAGAACTATTGACTAACATGTAGCTGTCCTCGTCCTTGCAGGTCACCTCGTAGTCATCGTTCTAGAAGTCCCAGGAGG</genome_strand>
        <mrna_strand>AATATATACAGTTGAAACAAGCGAATCAAAACCCCAGATTCTCTCTTTTTGCTGCAGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTGGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCACCGATGCCAAAGCTGAAATCAGCCATTACAGGTGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGGGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGATTTGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTCTGGATTTGTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................GGTTATGCACTTATTGAATATGAAAACTTTGAAGAAGCAGAGAGAGCTATTAGTGAAATGGATGGGAATGAGCTGCTAACTCAGACTATACATGTTGATTGGGCATTCAGCAAAGGTCCTTTTACAAGGAGAAATGTTAGGAGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACCTCCTCATCATCGTTCTAGAAGTCCCAGGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558888" ref_strand="+" ref_description="SGN-E558888 [18299]">
      <seq>actgaacgatccattgaaggatggattgttttagtcactggagtaatgaggaggcacaagaagatgatcttcataatacatttggtgagttcgggggagatcaagaatttgcatttgaatctggatcgtcgttctggatttgtcaaggtgaactggctcttttttttctcggaatgtttagctgcttctttgggttcttggtgttgcacatatgatgttatatgaattgcattcccattgtatgctttaatctaataaactttcctatcaaaagattttggatgatgacaattgtttcaatcaagaaaattttgttgaagattataagtgacagacattccttgttccatgtaactatgtaagagcatttccttggatgaatctgtaatggagtaaatggaataaaataggatcaatgttatgttaattatgagggagtccagatagatacttttctttgtttttagttaagtttctgcgtttgtcttggtttggagtggtatagtttttataaagttttccattttgacaggggttatgcacttattgaatatgagaactttgaagaagcagagagagctatcagtgaaatggatgggaatgagctgtcactcagactattcatgttgattgggcattcagcaaaggtccttttagaaggagaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78719" stop="77450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78411" g_stop="77750" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="667" r_length="657" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E558888" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E558888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78411" e_stop="77750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATACATTTGGTGAGTTC-GGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTCTGGATTTGTCAAGGTGAACTGACTC-TTTCTTTCTCGGAATGTTTAGCTGCTTGCCTGCTTCTTTGGGTTTTGGGTGTTGTACATATGATGCTATATGAATTGCATCCCCATTGTATGCTTTAATCTAATAAACTTTCCTATCAAAAGATTTTGGATGATGACAAAATTCTTTTGATCAAGAAAAATTTGTTGAAGTTTATAAGTGACAGACATTCCTTCTTCCATATAACTATGTAAGAGCATTTCCTTGAATGAATCTGTAATGGAGTAAAATGGAATAAAATAGGATCAATGCTATGTTAATTATGAAGGATTCTAGATAGATACTTTTCTTTG---TT--TTAAGTTTCAACTTTTGTCGTAGTTTGGAGTGGTATAGTTTTTATACAGTTTTCCATTTTGACA-GGGTTATGCACTTATTGAATATGAAAACTTTGAAGAAGCAGAGAGAGCTATTAGTGAAATGGATGGGAATGAGCTGCTAACTCAGACTATACATGTTGATTGGGCATTCAGCAAAGGTCCTTTTAGAAGGAGAAAT</genome_strand>
        <mrna_strand>CCATTGAAGGATGGATTGTTTTAGTCACTGGAGT-AATGAGGAGGCACAAGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTCTGGATTTGTCAAGGTGAACTGGCTCTTTTTTTTCTCGGAATGTTTA-------G-CTGCTTCTTTGGGTTCTTGGTGTTGCACATATGATGTTATATGAATTGCATTCCCATTGTATGCTTTAATCTAATAAACTTTCCTATCAAAAGATTTTGGATGATGAC--AATTGTTTCAATCAAGAAAATTTTGTTGAAGATTATAAGTGACAGACATTCCTTGTTCCATGTAACTATGTAAGAGCATTTCCTTGGATGAATCTGTAATGGAGT-AAATGGAATAAAATAGGATCAATGTTATGTTAATTATGAGGGAGTCCAGATAGATACTTTTCTTTGTTTTTAGTTAAGTTTCTGCGTTTGTCTTGGTTTGGAGTGGTATAGTTTTTATAAAGTTTTCCATTTTGACAGGGGTTATGCACTTATTGAATATGAGAACTTTGAAGAAGCAGAGAGAGCTATCAGTGAAATGGATGGGAATGAGCTG-TCACTCAGACTATTCATGTTGATTGGGCATTCAGCAAAGGTCCTTTTAGAAGGAGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267071" ref_strand="+" ref_description="SGN-E267071 [cLEI-4-G14]">
      <seq>atttcgagccagaggaagacgatctgatggacgaagacgttgacgcttcatcacctagggcaccgatgccaaagctgaaatcagccattacaggtggcggcggcggttcttctgcttctaagaaaatcaaaggacggggtttccgtgaagagactgctgaggctgaaaggaatgctcgcctttctgctcgatttgattcacttgactccgaaggtggccctggacctgaacgatccattgaaggatggattattttagtcactggagtcaatgaggaggcacacgaagatgatcttcataatacatttggtgagttcggggagatcaagaatttgcatttgaatctggatcgtcgttctggatttgtcaagggttatgcacttattgaatatgaaaactttgaagaagcagagagagctattagtgaaatggatgggaatgagctgctaactcagactatacatgttgattgggcattcagcaaaggtccttttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80496" stop="77460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80196" g_stop="79963" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79962" i_stop="78412" i_length="1551">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.156" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78411" g_stop="78275" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="371" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78274" i_stop="77885" i_length="390">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77884" g_stop="77760" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="496" r_length="125" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E267071" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80196" e_stop="79963"/>
          <exon e_start="78411" e_stop="78275"/>
          <exon e_start="77884" e_stop="77760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCACCGATGCCAAAGCTGAAATCAGCCATTACAGGTGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGGGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGATTTGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGATGTTAGTTTCTACTCTTAACTCATCTTTTATATAACCCAACGAACTTTCTACCTCATTTTTTTCTTTTTTTTTTTAGAATTTTGTTCAAATTAGGGGAAAATGTTGCAGTGGGTCAACAATTCATCAAAACCCCAGATTCTCTCTTTGTGCGCTGGTGTTAAAGAATTGTTACCTATAATTGTTTTCTCTATGATTTTGTGACGGGAGGTTGATAGTTGGGGTAATGGGTAAAGTGTCTTAAGGAAATGTTTTAGTCTGGTTAGAGACTTCTAATTAAGAGAATATCTAGGTTTAGGATGTCTTAATTTTAACAGGTTAAAAATTGCTTATTCTTATAATTGTTTTTCTTTTGGTTTTTGTGTTATGAATAAAGAAAACTGCTACAGGTTGGTAATCCGCGTAATGTAATGACCCTCGAAGGAGTGTGTTTAGTTTGGTTTACAGTGTTGAATCTAGAGAACATCTAACTTTAGAAGACTAACATTGAACACTCAAGTGTTGACCCTGTTATCTTTAGAGTTTTTTCACGAGGTGCTTTTATGGTTTTATTGAGTGTATTTAGTATACTTTCTAGTTTTGGTTTAATTTGTTATCTGTTATTGATTAGTTGAACGATATTAAATTGCTTTTGTGAATGAGACCATGTTAAGGTTTCACCTACATTGTATAAGCAAGCAGAATTAGAGAAGTGAATAAAGAAGTTAGGACCTACTGCTAGTAGAAGTTGATTTTGTTCATCTGTGTGAAGAAAAGCAACTAGAGAAAGGAACACTCAAATATTGCTTGTACTCATCTTCAAGTTGTTAGGACCCTGTAACGGTATCTAGAAAGTGGAATAACTTGAAGATAATTAAGTCGAGGTCTTTTTTTGTCAAAAAAAATAATTAAGTTGAGGTCTTCATTTTCAGAAAGAGTGGAAAGATCGTGAAATAGGGTAAAATGTTTGTACTTAATGTATATCTGTGCTGTTTGGTCCCCTCCTCTAGCCATTGTGCTTATAAGCCTCCGCCCTCCAGCTTCGTGTTCTTTACATTATAAATGTGCTAACCAGTTGGATTGGGTTCCAGCTATTACTTTATTTACATCTAAGAAGCACGTAATGGTAGGCTGTATATTTGTCACTTTATCATTGTTGCTTAGCTTTTAGAGAGAGCTAGCTTTGTATAGCTAATGCAACTTACCCTCCAACGGCTCAGCTTGGTCTTCAGCACTTGCTGTCGGAGAAATTGGCCAACAGAATCTAATATGCTGATTTCAGTCGTAGATATTAGTTGTTTGATTGCTGGGTCACCAGCACTTCAAGTAATATGTAATTTGTGCTGGGTATCTCAGATATTTTTCAAGTTATGCAATTCTAATGTAATAAAAATCCCAAAATGTCTGATAGGTGCTGATTCAGACATGCATGGTGTCCCCCCCCCCCCCCCCCTCTTTTTTTTTTTTTTCTTTTCTTCAATATATATATATATATATATATTTGAAGTTACCGGTAAGGTTAATAAAGGTTTAGTTTAATTAGTAGTAGAGAGCTAATGAGGGGAACATCTGCAGCCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTCTGGATTTGTCAAGGTGAACTGACTCTTTCTTTCTCGGAATGTTTAGCTGCTTGCCTGCTTCTTTGGGTTTTGGGTGTTGTACATATGATGCTATATGAATTGCATCCCCATTGTATGCTTTAATCTAATAAACTTTCCTATCAAAAGATTTTGGATGATGACAAAATTCTTTTGATCAAGAAAAATTTGTTGAAGTTTATAAGTGACAGACATTCCTTCTTCCATATAACTATGTAAGAGCATTTCCTTGAATGAATCTGTAATGGAGTAAAATGGAATAAAATAGGATCAATGCTATGTTAATTATGAAGGATTCTAGATAGATACTTTTCTTTGTTTTAAGTTTCAACTTTTGTCGTAGTTTGGAGTGGTATAGTTTTTATACAGTTTTCCATTTTGACAGGGTTATGCACTTATTGAATATGAAAACTTTGAAGAAGCAGAGAGAGCTATTAGTGAAATGGATGGGAATGAGCTGCTAACTCAGACTATACATGTTGATTGGGCATTCAGCAAAGGTCCTTTTAG</genome_strand>
        <mrna_strand>ATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCACCGATGCCAAAGCTGAAATCAGCCATTACAGGTGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGGGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGATTTGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTCTGGATTTGTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................GGTTATGCACTTATTGAATATGAAAACTTTGAAGAAGCAGAGAGAGCTATTAGTGAAATGGATGGGAATGAGCTGCTAACTCAGACTATACATGTTGATTGGGCATTCAGCAAAGGTCCTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E726024" ref_strand="+" ref_description="SGN-E726024 [LA10AC10]">
      <seq>aggctctttttgctgcagcggcgaaaatggcgaacccggaggaggctgtggatttcgagccagaggaagacgatctgatggacgaagacgttgacgcttcatcacctagggcaccgatgccaaagctgaaatcagccattacaggtggcggcggcggttcttctgcttctaagaaaatcaaaggacggggtttccgtgaagagactgctgaggctgaaaggaatgctcgcctttctgctcgatttgattcacttgactccgaaggtggccctggacctgaacgatccattgaaggatggattattttagtcactggagtcaatgaggaggcacacgaagatgatcttcataatacatttggtgagttcggggagatcaagaatttgcatttgaatctggatcgtcgttctggatttgtcaagggttatgcacttattgaatatgaaaactttgaagaagcagagagagctattagtgaaatggatgggaatgagctgcntactcagactatacatgttgattgggcattcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80544" stop="77475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80247" g_stop="79963" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79962" i_stop="78412" i_length="1551">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.156" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78411" g_stop="78275" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="422" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78274" i_stop="77885" i_length="390">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77884" g_stop="77775" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="532" r_length="110" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E726024" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80247" e_stop="79963"/>
          <exon e_start="78411" e_stop="78275"/>
          <exon e_start="77884" e_stop="77775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTTTTTGCTGCAGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTGGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCACCGATGCCAAAGCTGAAATCAGCCATTACAGGTGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGGGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGATTTGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGATGTTAGTTTCTACTCTTAACTCATCTTTTATATAACCCAACGAACTTTCTACCTCATTTTTTTCTTTTTTTTTTTAGAATTTTGTTCAAATTAGGGGAAAATGTTGCAGTGGGTCAACAATTCATCAAAACCCCAGATTCTCTCTTTGTGCGCTGGTGTTAAAGAATTGTTACCTATAATTGTTTTCTCTATGATTTTGTGACGGGAGGTTGATAGTTGGGGTAATGGGTAAAGTGTCTTAAGGAAATGTTTTAGTCTGGTTAGAGACTTCTAATTAAGAGAATATCTAGGTTTAGGATGTCTTAATTTTAACAGGTTAAAAATTGCTTATTCTTATAATTGTTTTTCTTTTGGTTTTTGTGTTATGAATAAAGAAAACTGCTACAGGTTGGTAATCCGCGTAATGTAATGACCCTCGAAGGAGTGTGTTTAGTTTGGTTTACAGTGTTGAATCTAGAGAACATCTAACTTTAGAAGACTAACATTGAACACTCAAGTGTTGACCCTGTTATCTTTAGAGTTTTTTCACGAGGTGCTTTTATGGTTTTATTGAGTGTATTTAGTATACTTTCTAGTTTTGGTTTAATTTGTTATCTGTTATTGATTAGTTGAACGATATTAAATTGCTTTTGTGAATGAGACCATGTTAAGGTTTCACCTACATTGTATAAGCAAGCAGAATTAGAGAAGTGAATAAAGAAGTTAGGACCTACTGCTAGTAGAAGTTGATTTTGTTCATCTGTGTGAAGAAAAGCAACTAGAGAAAGGAACACTCAAATATTGCTTGTACTCATCTTCAAGTTGTTAGGACCCTGTAACGGTATCTAGAAAGTGGAATAACTTGAAGATAATTAAGTCGAGGTCTTTTTTTGTCAAAAAAAATAATTAAGTTGAGGTCTTCATTTTCAGAAAGAGTGGAAAGATCGTGAAATAGGGTAAAATGTTTGTACTTAATGTATATCTGTGCTGTTTGGTCCCCTCCTCTAGCCATTGTGCTTATAAGCCTCCGCCCTCCAGCTTCGTGTTCTTTACATTATAAATGTGCTAACCAGTTGGATTGGGTTCCAGCTATTACTTTATTTACATCTAAGAAGCACGTAATGGTAGGCTGTATATTTGTCACTTTATCATTGTTGCTTAGCTTTTAGAGAGAGCTAGCTTTGTATAGCTAATGCAACTTACCCTCCAACGGCTCAGCTTGGTCTTCAGCACTTGCTGTCGGAGAAATTGGCCAACAGAATCTAATATGCTGATTTCAGTCGTAGATATTAGTTGTTTGATTGCTGGGTCACCAGCACTTCAAGTAATATGTAATTTGTGCTGGGTATCTCAGATATTTTTCAAGTTATGCAATTCTAATGTAATAAAAATCCCAAAATGTCTGATAGGTGCTGATTCAGACATGCATGGTGTCCCCCCCCCCCCCCCCCTCTTTTTTTTTTTTTTCTTTTCTTCAATATATATATATATATATATATTTGAAGTTACCGGTAAGGTTAATAAAGGTTTAGTTTAATTAGTAGTAGAGAGCTAATGAGGGGAACATCTGCAGCCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTCTGGATTTGTCAAGGTGAACTGACTCTTTCTTTCTCGGAATGTTTAGCTGCTTGCCTGCTTCTTTGGGTTTTGGGTGTTGTACATATGATGCTATATGAATTGCATCCCCATTGTATGCTTTAATCTAATAAACTTTCCTATCAAAAGATTTTGGATGATGACAAAATTCTTTTGATCAAGAAAAATTTGTTGAAGTTTATAAGTGACAGACATTCCTTCTTCCATATAACTATGTAAGAGCATTTCCTTGAATGAATCTGTAATGGAGTAAAATGGAATAAAATAGGATCAATGCTATGTTAATTATGAAGGATTCTAGATAGATACTTTTCTTTGTTTTAAGTTTCAACTTTTGTCGTAGTTTGGAGTGGTATAGTTTTTATACAGTTTTCCATTTTGACAGGGTTATGCACTTATTGAATATGAAAACTTTGAAGAAGCAGAGAGAGCTATTAGTGAAATGGATGGGAATGAGCTGCTAACTCAGACTATACATGTTGATTGGGCATTCAG</genome_strand>
        <mrna_strand>AGGCTCTTTTTGCTGCAGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTGGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCACCGATGCCAAAGCTGAAATCAGCCATTACAGGTGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGGGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGATTTGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTCTGGATTTGTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................GGTTATGCACTTATTGAATATGAAAACTTTGAAGAAGCAGAGAGAGCTATTAGTGAAATGGATGGGAATGAGCTGCNTACTCAGACTATACATGTTGATTGGGCATTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283679" ref_strand="+" ref_description="SGN-E283679 [cLES-1-L10]">
      <seq>tttgctgcagcggcgaaaatggcgaacccggaggaggctgtggatttcgagccagaggaagacgatctgatggacgaagacgttgacgcttcatcacctagggcaccgatgccaaagctgaaatcagccattacaggtggcggcggcggttcttctgcttctaagaaaatcaaaggacggggtttccgtgaagagactgctgaggctgaaaggaatgctcgcctttctgctcgatttgattcacttgactccgaaggtggccctggacctgaacgatccattgaaggatggattattttagtcactggagtcaatgaggaggcacacgaagatgatcttcataatacatttggtgagttcggggagatcaagaatttgcatttgaatctggatcgtcgttctggatttgtcaagggttatgcacttattgaatatgaaaactttgaagaagcagagagagctattagtgaaatggatgggaatgagctgctaactcagactatacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80539" stop="77491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80239" g_stop="79963" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79962" i_stop="78412" i_length="1551">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.156" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78411" g_stop="78275" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="414" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78274" i_stop="77885" i_length="390">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77884" g_stop="77791" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="508" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E283679" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80239" e_stop="79963"/>
          <exon e_start="78411" e_stop="78275"/>
          <exon e_start="77884" e_stop="77791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTGCAGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTGGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCACCGATGCCAAAGCTGAAATCAGCCATTACAGGTGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGGGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGATTTGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGATGTTAGTTTCTACTCTTAACTCATCTTTTATATAACCCAACGAACTTTCTACCTCATTTTTTTCTTTTTTTTTTTAGAATTTTGTTCAAATTAGGGGAAAATGTTGCAGTGGGTCAACAATTCATCAAAACCCCAGATTCTCTCTTTGTGCGCTGGTGTTAAAGAATTGTTACCTATAATTGTTTTCTCTATGATTTTGTGACGGGAGGTTGATAGTTGGGGTAATGGGTAAAGTGTCTTAAGGAAATGTTTTAGTCTGGTTAGAGACTTCTAATTAAGAGAATATCTAGGTTTAGGATGTCTTAATTTTAACAGGTTAAAAATTGCTTATTCTTATAATTGTTTTTCTTTTGGTTTTTGTGTTATGAATAAAGAAAACTGCTACAGGTTGGTAATCCGCGTAATGTAATGACCCTCGAAGGAGTGTGTTTAGTTTGGTTTACAGTGTTGAATCTAGAGAACATCTAACTTTAGAAGACTAACATTGAACACTCAAGTGTTGACCCTGTTATCTTTAGAGTTTTTTCACGAGGTGCTTTTATGGTTTTATTGAGTGTATTTAGTATACTTTCTAGTTTTGGTTTAATTTGTTATCTGTTATTGATTAGTTGAACGATATTAAATTGCTTTTGTGAATGAGACCATGTTAAGGTTTCACCTACATTGTATAAGCAAGCAGAATTAGAGAAGTGAATAAAGAAGTTAGGACCTACTGCTAGTAGAAGTTGATTTTGTTCATCTGTGTGAAGAAAAGCAACTAGAGAAAGGAACACTCAAATATTGCTTGTACTCATCTTCAAGTTGTTAGGACCCTGTAACGGTATCTAGAAAGTGGAATAACTTGAAGATAATTAAGTCGAGGTCTTTTTTTGTCAAAAAAAATAATTAAGTTGAGGTCTTCATTTTCAGAAAGAGTGGAAAGATCGTGAAATAGGGTAAAATGTTTGTACTTAATGTATATCTGTGCTGTTTGGTCCCCTCCTCTAGCCATTGTGCTTATAAGCCTCCGCCCTCCAGCTTCGTGTTCTTTACATTATAAATGTGCTAACCAGTTGGATTGGGTTCCAGCTATTACTTTATTTACATCTAAGAAGCACGTAATGGTAGGCTGTATATTTGTCACTTTATCATTGTTGCTTAGCTTTTAGAGAGAGCTAGCTTTGTATAGCTAATGCAACTTACCCTCCAACGGCTCAGCTTGGTCTTCAGCACTTGCTGTCGGAGAAATTGGCCAACAGAATCTAATATGCTGATTTCAGTCGTAGATATTAGTTGTTTGATTGCTGGGTCACCAGCACTTCAAGTAATATGTAATTTGTGCTGGGTATCTCAGATATTTTTCAAGTTATGCAATTCTAATGTAATAAAAATCCCAAAATGTCTGATAGGTGCTGATTCAGACATGCATGGTGTCCCCCCCCCCCCCCCCCTCTTTTTTTTTTTTTTCTTTTCTTCAATATATATATATATATATATATTTGAAGTTACCGGTAAGGTTAATAAAGGTTTAGTTTAATTAGTAGTAGAGAGCTAATGAGGGGAACATCTGCAGCCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTCTGGATTTGTCAAGGTGAACTGACTCTTTCTTTCTCGGAATGTTTAGCTGCTTGCCTGCTTCTTTGGGTTTTGGGTGTTGTACATATGATGCTATATGAATTGCATCCCCATTGTATGCTTTAATCTAATAAACTTTCCTATCAAAAGATTTTGGATGATGACAAAATTCTTTTGATCAAGAAAAATTTGTTGAAGTTTATAAGTGACAGACATTCCTTCTTCCATATAACTATGTAAGAGCATTTCCTTGAATGAATCTGTAATGGAGTAAAATGGAATAAAATAGGATCAATGCTATGTTAATTATGAAGGATTCTAGATAGATACTTTTCTTTGTTTTAAGTTTCAACTTTTGTCGTAGTTTGGAGTGGTATAGTTTTTATACAGTTTTCCATTTTGACAGGGTTATGCACTTATTGAATATGAAAACTTTGAAGAAGCAGAGAGAGCTATTAGTGAAATGGATGGGAATGAGCTGCTAACTCAGACTATACATG</genome_strand>
        <mrna_strand>TTTGCTGCAGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTGGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCACCGATGCCAAAGCTGAAATCAGCCATTACAGGTGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGGGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGATTTGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTCTGGATTTGTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................GGTTATGCACTTATTGAATATGAAAACTTTGAAGAAGCAGAGAGAGCTATTAGTGAAATGGATGGGAATGAGCTGCTAACTCAGACTATACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E609734" ref_strand="+" ref_description="SGN-E609734 [25749]">
      <seq>ctcaaatcaaataatttggtactatgaaattatgataaatattttcttattttcgacccgacccgaaaagattaggaagatcacatggccccaaaacccttctccgccagtataatcacccagcattttgcctagacacagcttcaataaaaatactttattatattcagttgaaacaagcaaatcaaaacccccaaattctctctttttgcagcggcgaaaatggcgaacccggaggaggctgtcgatttcgagccagaggaagacgatctgatggacgaagacgttgacgcttcatcacctagggcaccgatgccaaagctgaaatcagccattacaggcggcggcggtggttcttctgcttctaagaaaatcaaaggacgtggtttccgtgaagagactgctgaggctgaaaggaatgctcgcctttctgctcgattcgattcacttgactccgaaggtggccctggacctgaacgatccattgaaggatggattattttagtcactggagttaatgaggaggcacaagaagatgatcttcataatacgtttggtgagttcggggagatcaagaatttgcatttgaatctggatcgtcgttcttggatttgtcaagggttatgcacttattgaatatgagaacttttgaagaagcagagagagcctatcaggtgaaatggatgggaatgagcctgtcactcagactattcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80602" stop="77492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80411" g_stop="79963" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="481" r_length="429" r_score="0.904"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79962" i_stop="78412" i_length="1551">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.156" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78411" g_stop="78275" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="619" r_length="138" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78274" i_stop="77885" i_length="390">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77884" g_stop="77792" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="715" r_length="96" r_score="0.860"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E609734" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E609734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80411" e_stop="79963"/>
          <exon e_start="78411" e_stop="78275"/>
          <exon e_start="77884" e_stop="77792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGACCCGACCACAAAAAGATTTAGGAAGATCATATGG-CCCAAAACCCTTCTGTGCCAGTATAATACCCTAGCATTTTGCCTGGACACAGCTTCAACAAAAATACTTTATTAGTACTAATAAATAAATATATACAGTTGAAACAAGCGAATCAAAA-CCCCAGATTCTCTCTTTTTGCTGCAGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTGGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCACCGATGCCAAAGCTGAAATCAGCCATTACAGGTGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGGGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGATTTGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGATGTTAGTTTCTACTCTTAACTCATCTTTTATATAACCCAACGAACTTTCTACCTCATTTTTTTCTTTTTTTTTTTAGAATTTTGTTCAAATTAGGGGAAAATGTTGCAGTGGGTCAACAATTCATCAAAACCCCAGATTCTCTCTTTGTGCGCTGGTGTTAAAGAATTGTTACCTATAATTGTTTTCTCTATGATTTTGTGACGGGAGGTTGATAGTTGGGGTAATGGGTAAAGTGTCTTAAGGAAATGTTTTAGTCTGGTTAGAGACTTCTAATTAAGAGAATATCTAGGTTTAGGATGTCTTAATTTTAACAGGTTAAAAATTGCTTATTCTTATAATTGTTTTTCTTTTGGTTTTTGTGTTATGAATAAAGAAAACTGCTACAGGTTGGTAATCCGCGTAATGTAATGACCCTCGAAGGAGTGTGTTTAGTTTGGTTTACAGTGTTGAATCTAGAGAACATCTAACTTTAGAAGACTAACATTGAACACTCAAGTGTTGACCCTGTTATCTTTAGAGTTTTTTCACGAGGTGCTTTTATGGTTTTATTGAGTGTATTTAGTATACTTTCTAGTTTTGGTTTAATTTGTTATCTGTTATTGATTAGTTGAACGATATTAAATTGCTTTTGTGAATGAGACCATGTTAAGGTTTCACCTACATTGTATAAGCAAGCAGAATTAGAGAAGTGAATAAAGAAGTTAGGACCTACTGCTAGTAGAAGTTGATTTTGTTCATCTGTGTGAAGAAAAGCAACTAGAGAAAGGAACACTCAAATATTGCTTGTACTCATCTTCAAGTTGTTAGGACCCTGTAACGGTATCTAGAAAGTGGAATAACTTGAAGATAATTAAGTCGAGGTCTTTTTTTGTCAAAAAAAATAATTAAGTTGAGGTCTTCATTTTCAGAAAGAGTGGAAAGATCGTGAAATAGGGTAAAATGTTTGTACTTAATGTATATCTGTGCTGTTTGGTCCCCTCCTCTAGCCATTGTGCTTATAAGCCTCCGCCCTCCAGCTTCGTGTTCTTTACATTATAAATGTGCTAACCAGTTGGATTGGGTTCCAGCTATTACTTTATTTACATCTAAGAAGCACGTAATGGTAGGCTGTATATTTGTCACTTTATCATTGTTGCTTAGCTTTTAGAGAGAGCTAGCTTTGTATAGCTAATGCAACTTACCCTCCAACGGCTCAGCTTGGTCTTCAGCACTTGCTGTCGGAGAAATTGGCCAACAGAATCTAATATGCTGATTTCAGTCGTAGATATTAGTTGTTTGATTGCTGGGTCACCAGCACTTCAAGTAATATGTAATTTGTGCTGGGTATCTCAGATATTTTTCAAGTTATGCAATTCTAATGTAATAAAAATCCCAAAATGTCTGATAGGTGCTGATTCAGACATGCATGGTGTCCCCCCCCCCCCCCCCCTCTTTTTTTTTTTTTTCTTTTCTTCAATATATATATATATATATATATTTGAAGTTACCGGTAAGGTTAATAAAGGTTTAGTTTAATTAGTAGTAGAGAGCTAATGAGGGGAACATCTGCAGCCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTC-TGGATTTGTCAAGGTGAACTGACTCTTTCTTTCTCGGAATGTTTAGCTGCTTGCCTGCTTCTTTGGGTTTTGGGTGTTGTACATATGATGCTATATGAATTGCATCCCCATTGTATGCTTTAATCTAATAAACTTTCCTATCAAAAGATTTTGGATGATGACAAAATTCTTTTGATCAAGAAAAATTTGTTGAAGTTTATAAGTGACAGACATTCCTTCTTCCATATAACTATGTAAGAGCATTTCCTTGAATGAATCTGTAATGGAGTAAAATGGAATAAAATAGGATCAATGCTATGTTAATTATGAAGGATTCTAGATAGATACTTTTCTTTGTTTTAAGTTTCAACTTTTGTCGTAGTTTGGAGTGGTATAGTTTTTATACAGTTTTCCATTTTGACAGGGTTATGCACTTATTGAATATGAAAAC-TTTGAAGAAGCAGAGAGAG-CTATTA-GTGAAATGGATGGGAATGAGCTGCTAACTCAGACTATACAT</genome_strand>
        <mrna_strand>TCGACCCGACC-CGAAAAGAT-TAGGAAGATCACATGGCCCCAAAACCCTTCTCCGCCAGTATAATCACCCAGCATTTTGCCTAGACACAGCTTCAATAAAAATAC-----T--T--T-AT---T-A-TAT-T-CAGTTGAAACAAGCAAATCAAAACCCCCAAATTCTCTCTTTTTG---CAGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTCGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCACCGATGCCAAAGCTGAAATCAGCCATTACAGGCGGCGGCGGTGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGTGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGATTCGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGAAGGATGGATTATTTTAGTCACTGGAGTTAATGAGGAGGCACAAGAAGATGATCTTCATAATACGTTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTCTTGGATTTGTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................GGTTATGCACTTATTGAATATGAGAACTTTTGAAGAAGCAGAGAGAGCCTATCAGGTGAAATGGATGGGAATGAGCCTGTCACTCAGACTATTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E413811" ref_strand="+" ref_description="SGN-E413811 [STM-18-B11]">
      <seq>ctttttgcagcggcgaaaatggcgaacccggaggaggctgtcgatttcgagccagaggaagacgatctgatggacgaagacgttgacgcttcatcacctagggcatcgatgccaaagctgaaatcagccattacaagcggcggcggcggttcttctgcttctaagaaaatcaaaggacgtggtttccgtgaagagactgctgaggctgaaaggaatgctcgcctttctgctcgttttgattctcttgactccgaaggtggccctggacctgaacgatccattgaaggatggattgttttagtcactggagttaatgaggaggcacaagaagatgatcttcataatacatttggtgagttcggggagatcaagaatttgcatttgaatctggatcgtcgttctggatttgtcaagggttatgcacttattgaatatgagaactttgaagaagcagagagagctatcagtgaaatggatgggaatgagctgctcactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80538" stop="77503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80239" g_stop="79963" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79962" i_stop="78412" i_length="1551">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.156" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78411" g_stop="78275" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="414" r_length="137" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78274" i_stop="77885" i_length="390">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77884" g_stop="77803" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="496" r_length="82" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E413811" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E413811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80239" e_stop="79963"/>
          <exon e_start="78411" e_stop="78275"/>
          <exon e_start="77884" e_stop="77803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTGCAGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTGGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCACCGATGCCAAAGCTGAAATCAGCCATTACAGGTGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGGGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGATTTGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGATGTTAGTTTCTACTCTTAACTCATCTTTTATATAACCCAACGAACTTTCTACCTCATTTTTTTCTTTTTTTTTTTAGAATTTTGTTCAAATTAGGGGAAAATGTTGCAGTGGGTCAACAATTCATCAAAACCCCAGATTCTCTCTTTGTGCGCTGGTGTTAAAGAATTGTTACCTATAATTGTTTTCTCTATGATTTTGTGACGGGAGGTTGATAGTTGGGGTAATGGGTAAAGTGTCTTAAGGAAATGTTTTAGTCTGGTTAGAGACTTCTAATTAAGAGAATATCTAGGTTTAGGATGTCTTAATTTTAACAGGTTAAAAATTGCTTATTCTTATAATTGTTTTTCTTTTGGTTTTTGTGTTATGAATAAAGAAAACTGCTACAGGTTGGTAATCCGCGTAATGTAATGACCCTCGAAGGAGTGTGTTTAGTTTGGTTTACAGTGTTGAATCTAGAGAACATCTAACTTTAGAAGACTAACATTGAACACTCAAGTGTTGACCCTGTTATCTTTAGAGTTTTTTCACGAGGTGCTTTTATGGTTTTATTGAGTGTATTTAGTATACTTTCTAGTTTTGGTTTAATTTGTTATCTGTTATTGATTAGTTGAACGATATTAAATTGCTTTTGTGAATGAGACCATGTTAAGGTTTCACCTACATTGTATAAGCAAGCAGAATTAGAGAAGTGAATAAAGAAGTTAGGACCTACTGCTAGTAGAAGTTGATTTTGTTCATCTGTGTGAAGAAAAGCAACTAGAGAAAGGAACACTCAAATATTGCTTGTACTCATCTTCAAGTTGTTAGGACCCTGTAACGGTATCTAGAAAGTGGAATAACTTGAAGATAATTAAGTCGAGGTCTTTTTTTGTCAAAAAAAATAATTAAGTTGAGGTCTTCATTTTCAGAAAGAGTGGAAAGATCGTGAAATAGGGTAAAATGTTTGTACTTAATGTATATCTGTGCTGTTTGGTCCCCTCCTCTAGCCATTGTGCTTATAAGCCTCCGCCCTCCAGCTTCGTGTTCTTTACATTATAAATGTGCTAACCAGTTGGATTGGGTTCCAGCTATTACTTTATTTACATCTAAGAAGCACGTAATGGTAGGCTGTATATTTGTCACTTTATCATTGTTGCTTAGCTTTTAGAGAGAGCTAGCTTTGTATAGCTAATGCAACTTACCCTCCAACGGCTCAGCTTGGTCTTCAGCACTTGCTGTCGGAGAAATTGGCCAACAGAATCTAATATGCTGATTTCAGTCGTAGATATTAGTTGTTTGATTGCTGGGTCACCAGCACTTCAAGTAATATGTAATTTGTGCTGGGTATCTCAGATATTTTTCAAGTTATGCAATTCTAATGTAATAAAAATCCCAAAATGTCTGATAGGTGCTGATTCAGACATGCATGGTGTCCCCCCCCCCCCCCCCCTCTTTTTTTTTTTTTTCTTTTCTTCAATATATATATATATATATATATTTGAAGTTACCGGTAAGGTTAATAAAGGTTTAGTTTAATTAGTAGTAGAGAGCTAATGAGGGGAACATCTGCAGCCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTCTGGATTTGTCAAGGTGAACTGACTCTTTCTTTCTCGGAATGTTTAGCTGCTTGCCTGCTTCTTTGGGTTTTGGGTGTTGTACATATGATGCTATATGAATTGCATCCCCATTGTATGCTTTAATCTAATAAACTTTCCTATCAAAAGATTTTGGATGATGACAAAATTCTTTTGATCAAGAAAAATTTGTTGAAGTTTATAAGTGACAGACATTCCTTCTTCCATATAACTATGTAAGAGCATTTCCTTGAATGAATCTGTAATGGAGTAAAATGGAATAAAATAGGATCAATGCTATGTTAATTATGAAGGATTCTAGATAGATACTTTTCTTTGTTTTAAGTTTCAACTTTTGTCGTAGTTTGGAGTGGTATAGTTTTTATACAGTTTTCCATTTTGACAGGGTTATGCACTTATTGAATATGAAAACTTTGAAGAAGCAGAGAGAGCTATTAGTGAAATGGATGGGAATGAGCTGCTAACTC</genome_strand>
        <mrna_strand>CTTTTTGCAGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTCGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCATCGATGCCAAAGCTGAAATCAGCCATTACAAGCGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGTGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGTTTTGATTCTCTTGACTCCGAAGGTGGCCCTGGACCTGAACGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGAAGGATGGATTGTTTTAGTCACTGGAGTTAATGAGGAGGCACAAGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTCTGGATTTGTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................GGTTATGCACTTATTGAATATGAGAACTTTGAAGAAGCAGAGAGAGCTATCAGTGAAATGGATGGGAATGAGCTGCTCACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290960" ref_strand="+" ref_description="SGN-E290960 [cLET-8-I22]">
      <seq>ttttgctgcagcggcgaaaatggcgaacccggaggaggctgtggatttcgagccagaggaagacgatctgatggacgaagacgttgacgcttcatcacctagggcaccgatgccaaagctgaaatcagccattacaggtggcggcggcggttcttctgcttctaagaaaatcaaaggacggggtttccgtgaagagactgctgaggctgaaaggaatgctcgcctttctgctcgatttgattcacttgactccgaaggtggccctggacctgaacgatccattgaaggatggattattttagtcactggagtcaatgaggaggcacacgaagatgatcttcataatacatttggtgagttcggggagatcaagaatttgcatttgaatctggatcgtcgttctggatttgtcaagggttatgcacttattgaatatgaaaactttgaagaagcagagagagctattagtgaaatggatgggaatgagctgctaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80540" stop="77504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80240" g_stop="79963" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79962" i_stop="78412" i_length="1551">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.156" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78411" g_stop="78275" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="415" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78274" i_stop="77885" i_length="390">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77884" g_stop="77804" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="496" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E290960" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80240" e_stop="79963"/>
          <exon e_start="78411" e_stop="78275"/>
          <exon e_start="77884" e_stop="77804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGCTGCAGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTGGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCACCGATGCCAAAGCTGAAATCAGCCATTACAGGTGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGGGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGATTTGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGATGTTAGTTTCTACTCTTAACTCATCTTTTATATAACCCAACGAACTTTCTACCTCATTTTTTTCTTTTTTTTTTTAGAATTTTGTTCAAATTAGGGGAAAATGTTGCAGTGGGTCAACAATTCATCAAAACCCCAGATTCTCTCTTTGTGCGCTGGTGTTAAAGAATTGTTACCTATAATTGTTTTCTCTATGATTTTGTGACGGGAGGTTGATAGTTGGGGTAATGGGTAAAGTGTCTTAAGGAAATGTTTTAGTCTGGTTAGAGACTTCTAATTAAGAGAATATCTAGGTTTAGGATGTCTTAATTTTAACAGGTTAAAAATTGCTTATTCTTATAATTGTTTTTCTTTTGGTTTTTGTGTTATGAATAAAGAAAACTGCTACAGGTTGGTAATCCGCGTAATGTAATGACCCTCGAAGGAGTGTGTTTAGTTTGGTTTACAGTGTTGAATCTAGAGAACATCTAACTTTAGAAGACTAACATTGAACACTCAAGTGTTGACCCTGTTATCTTTAGAGTTTTTTCACGAGGTGCTTTTATGGTTTTATTGAGTGTATTTAGTATACTTTCTAGTTTTGGTTTAATTTGTTATCTGTTATTGATTAGTTGAACGATATTAAATTGCTTTTGTGAATGAGACCATGTTAAGGTTTCACCTACATTGTATAAGCAAGCAGAATTAGAGAAGTGAATAAAGAAGTTAGGACCTACTGCTAGTAGAAGTTGATTTTGTTCATCTGTGTGAAGAAAAGCAACTAGAGAAAGGAACACTCAAATATTGCTTGTACTCATCTTCAAGTTGTTAGGACCCTGTAACGGTATCTAGAAAGTGGAATAACTTGAAGATAATTAAGTCGAGGTCTTTTTTTGTCAAAAAAAATAATTAAGTTGAGGTCTTCATTTTCAGAAAGAGTGGAAAGATCGTGAAATAGGGTAAAATGTTTGTACTTAATGTATATCTGTGCTGTTTGGTCCCCTCCTCTAGCCATTGTGCTTATAAGCCTCCGCCCTCCAGCTTCGTGTTCTTTACATTATAAATGTGCTAACCAGTTGGATTGGGTTCCAGCTATTACTTTATTTACATCTAAGAAGCACGTAATGGTAGGCTGTATATTTGTCACTTTATCATTGTTGCTTAGCTTTTAGAGAGAGCTAGCTTTGTATAGCTAATGCAACTTACCCTCCAACGGCTCAGCTTGGTCTTCAGCACTTGCTGTCGGAGAAATTGGCCAACAGAATCTAATATGCTGATTTCAGTCGTAGATATTAGTTGTTTGATTGCTGGGTCACCAGCACTTCAAGTAATATGTAATTTGTGCTGGGTATCTCAGATATTTTTCAAGTTATGCAATTCTAATGTAATAAAAATCCCAAAATGTCTGATAGGTGCTGATTCAGACATGCATGGTGTCCCCCCCCCCCCCCCCCTCTTTTTTTTTTTTTTCTTTTCTTCAATATATATATATATATATATATTTGAAGTTACCGGTAAGGTTAATAAAGGTTTAGTTTAATTAGTAGTAGAGAGCTAATGAGGGGAACATCTGCAGCCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTCTGGATTTGTCAAGGTGAACTGACTCTTTCTTTCTCGGAATGTTTAGCTGCTTGCCTGCTTCTTTGGGTTTTGGGTGTTGTACATATGATGCTATATGAATTGCATCCCCATTGTATGCTTTAATCTAATAAACTTTCCTATCAAAAGATTTTGGATGATGACAAAATTCTTTTGATCAAGAAAAATTTGTTGAAGTTTATAAGTGACAGACATTCCTTCTTCCATATAACTATGTAAGAGCATTTCCTTGAATGAATCTGTAATGGAGTAAAATGGAATAAAATAGGATCAATGCTATGTTAATTATGAAGGATTCTAGATAGATACTTTTCTTTGTTTTAAGTTTCAACTTTTGTCGTAGTTTGGAGTGGTATAGTTTTTATACAGTTTTCCATTTTGACAGGGTTATGCACTTATTGAATATGAAAACTTTGAAGAAGCAGAGAGAGCTATTAGTGAAATGGATGGGAATGAGCTGCTAACT</genome_strand>
        <mrna_strand>TTTTGCTGCAGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTGGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCACCGATGCCAAAGCTGAAATCAGCCATTACAGGTGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGGGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGATTTGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTCTGGATTTGTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................GGTTATGCACTTATTGAATATGAAAACTTTGAAGAAGCAGAGAGAGCTATTAGTGAAATGGATGGGAATGAGCTGCTAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E472785" ref_strand="+" ref_description="SGN-E472785 [cSTB-29-L24]">
      <seq>ctttttgcagcggcgaaaatggcgaacccggaggaggctgtcgatttcgagccagaggaagacgatctgatggacgaagacgttgacgcttcatcacctagggcatcgatgccaaagctgaaatcagccattacaagcggcggcggcggttcttctgcttctaagaaaatcaaaggacgtggtttccgtgaagagactgctgaggctgaaaggaatgctcgcctttctgctcgttttgattctcttgactccgaaggtggccctggacctgaacgatccattgaaggatggattgatttagtcactggagttaatgaggaggcacaagaagatgatcttcataatacatttggtgagttcggggagatcaagaatttgcatttgaatctggatcgtcgttctggatttgtcaagggttatgcacttattgaatatgagaactttgaagaagcagagagagctatcagtgaaatggatgggaatgagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80538" stop="77511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80239" g_stop="79963" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79962" i_stop="78412" i_length="1551">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.156" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78411" g_stop="78275" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="414" r_length="137" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78274" i_stop="77885" i_length="390">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77884" g_stop="77811" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="488" r_length="74" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E472785" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E472785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80239" e_stop="79963"/>
          <exon e_start="78411" e_stop="78275"/>
          <exon e_start="77884" e_stop="77811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTGCAGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTGGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCACCGATGCCAAAGCTGAAATCAGCCATTACAGGTGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGGGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGATTTGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGATGTTAGTTTCTACTCTTAACTCATCTTTTATATAACCCAACGAACTTTCTACCTCATTTTTTTCTTTTTTTTTTTAGAATTTTGTTCAAATTAGGGGAAAATGTTGCAGTGGGTCAACAATTCATCAAAACCCCAGATTCTCTCTTTGTGCGCTGGTGTTAAAGAATTGTTACCTATAATTGTTTTCTCTATGATTTTGTGACGGGAGGTTGATAGTTGGGGTAATGGGTAAAGTGTCTTAAGGAAATGTTTTAGTCTGGTTAGAGACTTCTAATTAAGAGAATATCTAGGTTTAGGATGTCTTAATTTTAACAGGTTAAAAATTGCTTATTCTTATAATTGTTTTTCTTTTGGTTTTTGTGTTATGAATAAAGAAAACTGCTACAGGTTGGTAATCCGCGTAATGTAATGACCCTCGAAGGAGTGTGTTTAGTTTGGTTTACAGTGTTGAATCTAGAGAACATCTAACTTTAGAAGACTAACATTGAACACTCAAGTGTTGACCCTGTTATCTTTAGAGTTTTTTCACGAGGTGCTTTTATGGTTTTATTGAGTGTATTTAGTATACTTTCTAGTTTTGGTTTAATTTGTTATCTGTTATTGATTAGTTGAACGATATTAAATTGCTTTTGTGAATGAGACCATGTTAAGGTTTCACCTACATTGTATAAGCAAGCAGAATTAGAGAAGTGAATAAAGAAGTTAGGACCTACTGCTAGTAGAAGTTGATTTTGTTCATCTGTGTGAAGAAAAGCAACTAGAGAAAGGAACACTCAAATATTGCTTGTACTCATCTTCAAGTTGTTAGGACCCTGTAACGGTATCTAGAAAGTGGAATAACTTGAAGATAATTAAGTCGAGGTCTTTTTTTGTCAAAAAAAATAATTAAGTTGAGGTCTTCATTTTCAGAAAGAGTGGAAAGATCGTGAAATAGGGTAAAATGTTTGTACTTAATGTATATCTGTGCTGTTTGGTCCCCTCCTCTAGCCATTGTGCTTATAAGCCTCCGCCCTCCAGCTTCGTGTTCTTTACATTATAAATGTGCTAACCAGTTGGATTGGGTTCCAGCTATTACTTTATTTACATCTAAGAAGCACGTAATGGTAGGCTGTATATTTGTCACTTTATCATTGTTGCTTAGCTTTTAGAGAGAGCTAGCTTTGTATAGCTAATGCAACTTACCCTCCAACGGCTCAGCTTGGTCTTCAGCACTTGCTGTCGGAGAAATTGGCCAACAGAATCTAATATGCTGATTTCAGTCGTAGATATTAGTTGTTTGATTGCTGGGTCACCAGCACTTCAAGTAATATGTAATTTGTGCTGGGTATCTCAGATATTTTTCAAGTTATGCAATTCTAATGTAATAAAAATCCCAAAATGTCTGATAGGTGCTGATTCAGACATGCATGGTGTCCCCCCCCCCCCCCCCCTCTTTTTTTTTTTTTTCTTTTCTTCAATATATATATATATATATATATTTGAAGTTACCGGTAAGGTTAATAAAGGTTTAGTTTAATTAGTAGTAGAGAGCTAATGAGGGGAACATCTGCAGCCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTCTGGATTTGTCAAGGTGAACTGACTCTTTCTTTCTCGGAATGTTTAGCTGCTTGCCTGCTTCTTTGGGTTTTGGGTGTTGTACATATGATGCTATATGAATTGCATCCCCATTGTATGCTTTAATCTAATAAACTTTCCTATCAAAAGATTTTGGATGATGACAAAATTCTTTTGATCAAGAAAAATTTGTTGAAGTTTATAAGTGACAGACATTCCTTCTTCCATATAACTATGTAAGAGCATTTCCTTGAATGAATCTGTAATGGAGTAAAATGGAATAAAATAGGATCAATGCTATGTTAATTATGAAGGATTCTAGATAGATACTTTTCTTTGTTTTAAGTTTCAACTTTTGTCGTAGTTTGGAGTGGTATAGTTTTTATACAGTTTTCCATTTTGACAGGGTTATGCACTTATTGAATATGAAAACTTTGAAGAAGCAGAGAGAGCTATTAGTGAAATGGATGGGAATGAGCT</genome_strand>
        <mrna_strand>CTTTTTGCAGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTCGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCATCGATGCCAAAGCTGAAATCAGCCATTACAAGCGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGTGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGTTTTGATTCTCTTGACTCCGAAGGTGGCCCTGGACCTGAACGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGAAGGATGGATTGATTTAGTCACTGGAGTTAATGAGGAGGCACAAGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTCTGGATTTGTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................GGTTATGCACTTATTGAATATGAGAACTTTGAAGAAGCAGAGAGAGCTATCAGTGAAATGGATGGGAATGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476526" ref_strand="+" ref_description="SGN-E476526 [cSTB-45-O1]">
      <seq>aatactttattatattcagttgaaacaagcaaatcaaaaccccaaattctctctttttgcagcggcgaaaatggcgaacccggaggaggctgtcgatttcgagccagaggaagacgatctgatggacgaagacgttgacgcttcatcacctagggcatcgatgccaaagctgaaatcagccattacaagcggcggcggcggttcttctgcttctaagaaaatcaaaggacgtggtttccgtgaagagactgctgaggctgaaaggaatgctcgcctttctgctcgttttgattctcttgactccgaaggtggccctggacctgaacgatccattgaaggatggattgttttagtcactggagttaatgaggaggcacaagaagatgatcttcataatacatttggtgagttcggggagatcaagaatttgcatttgaatctggatcgtcgntctggatttgtcaagggttatgcacttattgaatatgagaactttgaagaagcagagagagctatcagtgaaatggatgggaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80594" stop="77515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80294" g_stop="79963" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79962" i_stop="78412" i_length="1551">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.156" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78411" g_stop="78275" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="466" r_length="137" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78274" i_stop="77885" i_length="390">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77884" g_stop="77815" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="536" r_length="70" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E476526" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E476526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80294" e_stop="79963"/>
          <exon e_start="78411" e_stop="78275"/>
          <exon e_start="77884" e_stop="77815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAATAAATATATACAGTTGAAACAAGCGAATCAAAACCCCAGATTCTCTCTTTTTGCTGCAGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTGGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCACCGATGCCAAAGCTGAAATCAGCCATTACAGGTGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGGGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGATTTGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGATGTTAGTTTCTACTCTTAACTCATCTTTTATATAACCCAACGAACTTTCTACCTCATTTTTTTCTTTTTTTTTTTAGAATTTTGTTCAAATTAGGGGAAAATGTTGCAGTGGGTCAACAATTCATCAAAACCCCAGATTCTCTCTTTGTGCGCTGGTGTTAAAGAATTGTTACCTATAATTGTTTTCTCTATGATTTTGTGACGGGAGGTTGATAGTTGGGGTAATGGGTAAAGTGTCTTAAGGAAATGTTTTAGTCTGGTTAGAGACTTCTAATTAAGAGAATATCTAGGTTTAGGATGTCTTAATTTTAACAGGTTAAAAATTGCTTATTCTTATAATTGTTTTTCTTTTGGTTTTTGTGTTATGAATAAAGAAAACTGCTACAGGTTGGTAATCCGCGTAATGTAATGACCCTCGAAGGAGTGTGTTTAGTTTGGTTTACAGTGTTGAATCTAGAGAACATCTAACTTTAGAAGACTAACATTGAACACTCAAGTGTTGACCCTGTTATCTTTAGAGTTTTTTCACGAGGTGCTTTTATGGTTTTATTGAGTGTATTTAGTATACTTTCTAGTTTTGGTTTAATTTGTTATCTGTTATTGATTAGTTGAACGATATTAAATTGCTTTTGTGAATGAGACCATGTTAAGGTTTCACCTACATTGTATAAGCAAGCAGAATTAGAGAAGTGAATAAAGAAGTTAGGACCTACTGCTAGTAGAAGTTGATTTTGTTCATCTGTGTGAAGAAAAGCAACTAGAGAAAGGAACACTCAAATATTGCTTGTACTCATCTTCAAGTTGTTAGGACCCTGTAACGGTATCTAGAAAGTGGAATAACTTGAAGATAATTAAGTCGAGGTCTTTTTTTGTCAAAAAAAATAATTAAGTTGAGGTCTTCATTTTCAGAAAGAGTGGAAAGATCGTGAAATAGGGTAAAATGTTTGTACTTAATGTATATCTGTGCTGTTTGGTCCCCTCCTCTAGCCATTGTGCTTATAAGCCTCCGCCCTCCAGCTTCGTGTTCTTTACATTATAAATGTGCTAACCAGTTGGATTGGGTTCCAGCTATTACTTTATTTACATCTAAGAAGCACGTAATGGTAGGCTGTATATTTGTCACTTTATCATTGTTGCTTAGCTTTTAGAGAGAGCTAGCTTTGTATAGCTAATGCAACTTACCCTCCAACGGCTCAGCTTGGTCTTCAGCACTTGCTGTCGGAGAAATTGGCCAACAGAATCTAATATGCTGATTTCAGTCGTAGATATTAGTTGTTTGATTGCTGGGTCACCAGCACTTCAAGTAATATGTAATTTGTGCTGGGTATCTCAGATATTTTTCAAGTTATGCAATTCTAATGTAATAAAAATCCCAAAATGTCTGATAGGTGCTGATTCAGACATGCATGGTGTCCCCCCCCCCCCCCCCCTCTTTTTTTTTTTTTTCTTTTCTTCAATATATATATATATATATATATTTGAAGTTACCGGTAAGGTTAATAAAGGTTTAGTTTAATTAGTAGTAGAGAGCTAATGAGGGGAACATCTGCAGCCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTCTGGATTTGTCAAGGTGAACTGACTCTTTCTTTCTCGGAATGTTTAGCTGCTTGCCTGCTTCTTTGGGTTTTGGGTGTTGTACATATGATGCTATATGAATTGCATCCCCATTGTATGCTTTAATCTAATAAACTTTCCTATCAAAAGATTTTGGATGATGACAAAATTCTTTTGATCAAGAAAAATTTGTTGAAGTTTATAAGTGACAGACATTCCTTCTTCCATATAACTATGTAAGAGCATTTCCTTGAATGAATCTGTAATGGAGTAAAATGGAATAAAATAGGATCAATGCTATGTTAATTATGAAGGATTCTAGATAGATACTTTTCTTTGTTTTAAGTTTCAACTTTTGTCGTAGTTTGGAGTGGTATAGTTTTTATACAGTTTTCCATTTTGACAGGGTTATGCACTTATTGAATATGAAAACTTTGAAGAAGCAGAGAGAGCTATTAGTGAAATGGATGGGAATG</genome_strand>
        <mrna_strand>AATACTTTATTATATTCAGTTGAAACAAGCAAATCAAAACCCCAAATTCTCTC-TTTT--TGCAGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTCGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCATCGATGCCAAAGCTGAAATCAGCCATTACAAGCGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGTGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGTTTTGATTCTCTTGACTCCGAAGGTGGCCCTGGACCTGAACGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGAAGGATGGATTGTTTTAGTCACTGGAGTTAATGAGGAGGCACAAGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGNTCTGGATTTGTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................GGTTATGCACTTATTGAATATGAGAACTTTGAAGAAGCAGAGAGAGCTATCAGTGAAATGGATGGGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317566" ref_strand="+" ref_description="SGN-E317566 [cTOB-17-M23]">
      <seq>tctctctttttgctgcagcggcgaaaatggcgaacccggaggaggctgtggatttcgagccagaggaagacgatctgatggacgaagacgttgacgcttcatcacctagggcaccgatgccaaagctgaaatcagccattacaggtggcggcggcggttcttctgcttctaagaaaatcaaaggacggggtttccgtgaagagactgctgaggctgaaaggaatgctcgcctttctgctcgatttgattcacttgactccgaaggtggccctggacctgaacgatccattgaaggatggattattttagtcactggagtcaatgaggaggcacacgaagatgatcttcataatacatttggtgagttcggggagatcaagaatttgcatttgaatctggatcgtcgttctggatttgtcaagggttatgcacttattgaatatgaaaactttgaagaagcagagagagctattagtgaaatggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80547" stop="77521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80247" g_stop="79963" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79962" i_stop="78412" i_length="1551">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.156" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78411" g_stop="78275" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="422" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78274" i_stop="77885" i_length="390">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77884" g_stop="77821" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="486" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E317566" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80247" e_stop="79963"/>
          <exon e_start="78411" e_stop="78275"/>
          <exon e_start="77884" e_stop="77821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTTTTTGCTGCAGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTGGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCACCGATGCCAAAGCTGAAATCAGCCATTACAGGTGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGGGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGATTTGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGATGTTAGTTTCTACTCTTAACTCATCTTTTATATAACCCAACGAACTTTCTACCTCATTTTTTTCTTTTTTTTTTTAGAATTTTGTTCAAATTAGGGGAAAATGTTGCAGTGGGTCAACAATTCATCAAAACCCCAGATTCTCTCTTTGTGCGCTGGTGTTAAAGAATTGTTACCTATAATTGTTTTCTCTATGATTTTGTGACGGGAGGTTGATAGTTGGGGTAATGGGTAAAGTGTCTTAAGGAAATGTTTTAGTCTGGTTAGAGACTTCTAATTAAGAGAATATCTAGGTTTAGGATGTCTTAATTTTAACAGGTTAAAAATTGCTTATTCTTATAATTGTTTTTCTTTTGGTTTTTGTGTTATGAATAAAGAAAACTGCTACAGGTTGGTAATCCGCGTAATGTAATGACCCTCGAAGGAGTGTGTTTAGTTTGGTTTACAGTGTTGAATCTAGAGAACATCTAACTTTAGAAGACTAACATTGAACACTCAAGTGTTGACCCTGTTATCTTTAGAGTTTTTTCACGAGGTGCTTTTATGGTTTTATTGAGTGTATTTAGTATACTTTCTAGTTTTGGTTTAATTTGTTATCTGTTATTGATTAGTTGAACGATATTAAATTGCTTTTGTGAATGAGACCATGTTAAGGTTTCACCTACATTGTATAAGCAAGCAGAATTAGAGAAGTGAATAAAGAAGTTAGGACCTACTGCTAGTAGAAGTTGATTTTGTTCATCTGTGTGAAGAAAAGCAACTAGAGAAAGGAACACTCAAATATTGCTTGTACTCATCTTCAAGTTGTTAGGACCCTGTAACGGTATCTAGAAAGTGGAATAACTTGAAGATAATTAAGTCGAGGTCTTTTTTTGTCAAAAAAAATAATTAAGTTGAGGTCTTCATTTTCAGAAAGAGTGGAAAGATCGTGAAATAGGGTAAAATGTTTGTACTTAATGTATATCTGTGCTGTTTGGTCCCCTCCTCTAGCCATTGTGCTTATAAGCCTCCGCCCTCCAGCTTCGTGTTCTTTACATTATAAATGTGCTAACCAGTTGGATTGGGTTCCAGCTATTACTTTATTTACATCTAAGAAGCACGTAATGGTAGGCTGTATATTTGTCACTTTATCATTGTTGCTTAGCTTTTAGAGAGAGCTAGCTTTGTATAGCTAATGCAACTTACCCTCCAACGGCTCAGCTTGGTCTTCAGCACTTGCTGTCGGAGAAATTGGCCAACAGAATCTAATATGCTGATTTCAGTCGTAGATATTAGTTGTTTGATTGCTGGGTCACCAGCACTTCAAGTAATATGTAATTTGTGCTGGGTATCTCAGATATTTTTCAAGTTATGCAATTCTAATGTAATAAAAATCCCAAAATGTCTGATAGGTGCTGATTCAGACATGCATGGTGTCCCCCCCCCCCCCCCCCTCTTTTTTTTTTTTTTCTTTTCTTCAATATATATATATATATATATATTTGAAGTTACCGGTAAGGTTAATAAAGGTTTAGTTTAATTAGTAGTAGAGAGCTAATGAGGGGAACATCTGCAGCCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTCTGGATTTGTCAAGGTGAACTGACTCTTTCTTTCTCGGAATGTTTAGCTGCTTGCCTGCTTCTTTGGGTTTTGGGTGTTGTACATATGATGCTATATGAATTGCATCCCCATTGTATGCTTTAATCTAATAAACTTTCCTATCAAAAGATTTTGGATGATGACAAAATTCTTTTGATCAAGAAAAATTTGTTGAAGTTTATAAGTGACAGACATTCCTTCTTCCATATAACTATGTAAGAGCATTTCCTTGAATGAATCTGTAATGGAGTAAAATGGAATAAAATAGGATCAATGCTATGTTAATTATGAAGGATTCTAGATAGATACTTTTCTTTGTTTTAAGTTTCAACTTTTGTCGTAGTTTGGAGTGGTATAGTTTTTATACAGTTTTCCATTTTGACAGGGTTATGCACTTATTGAATATGAAAACTTTGAAGAAGCAGAGAGAGCTATTAGTGAAATGGATG</genome_strand>
        <mrna_strand>TCTCTCTTTTTGCTGCAGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTGGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCACCGATGCCAAAGCTGAAATCAGCCATTACAGGTGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGGGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGATTTGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTCTGGATTTGTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................GGTTATGCACTTATTGAATATGAAAACTTTGAAGAAGCAGAGAGAGCTATTAGTGAAATGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280626" ref_strand="+" ref_description="SGN-E280626 [cLER-1-B10]">
      <seq>tttgctgcagcggcgaaaatggcgaacccggaggaggctgtggatttcgagccagaggaagacgatctgatggacgaagacgttgacgcttcatcacctagggcaccgatgccaaagctgaaatcagccattacaggtggcggcggcggttcttctgcttctaagaaaatcaaaggacggggtttccgtgaagagactgctgaggctgaaaggaatgctcgcctttctgctcgatttgattcacttgactccgaaggtggccctggacctgaacgatccattgaaggatggattattttagtcactggagtcaatgaggaggcacaagaagatgatcttcataatacatttggtgagttcggggagatcaagaatttgcatttgaatctggatcgtcgttctggatttgtcaagggttatgcacttattgaatatgaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80539" stop="77557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80239" g_stop="79963" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79962" i_stop="78412" i_length="1551">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.156" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78411" g_stop="78275" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="414" r_length="137" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78274" i_stop="77885" i_length="390">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77884" g_stop="77857" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="442" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E280626" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80239" e_stop="79963"/>
          <exon e_start="78411" e_stop="78275"/>
          <exon e_start="77884" e_stop="77857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTGCAGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTGGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCACCGATGCCAAAGCTGAAATCAGCCATTACAGGTGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGGGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGATTTGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGATGTTAGTTTCTACTCTTAACTCATCTTTTATATAACCCAACGAACTTTCTACCTCATTTTTTTCTTTTTTTTTTTAGAATTTTGTTCAAATTAGGGGAAAATGTTGCAGTGGGTCAACAATTCATCAAAACCCCAGATTCTCTCTTTGTGCGCTGGTGTTAAAGAATTGTTACCTATAATTGTTTTCTCTATGATTTTGTGACGGGAGGTTGATAGTTGGGGTAATGGGTAAAGTGTCTTAAGGAAATGTTTTAGTCTGGTTAGAGACTTCTAATTAAGAGAATATCTAGGTTTAGGATGTCTTAATTTTAACAGGTTAAAAATTGCTTATTCTTATAATTGTTTTTCTTTTGGTTTTTGTGTTATGAATAAAGAAAACTGCTACAGGTTGGTAATCCGCGTAATGTAATGACCCTCGAAGGAGTGTGTTTAGTTTGGTTTACAGTGTTGAATCTAGAGAACATCTAACTTTAGAAGACTAACATTGAACACTCAAGTGTTGACCCTGTTATCTTTAGAGTTTTTTCACGAGGTGCTTTTATGGTTTTATTGAGTGTATTTAGTATACTTTCTAGTTTTGGTTTAATTTGTTATCTGTTATTGATTAGTTGAACGATATTAAATTGCTTTTGTGAATGAGACCATGTTAAGGTTTCACCTACATTGTATAAGCAAGCAGAATTAGAGAAGTGAATAAAGAAGTTAGGACCTACTGCTAGTAGAAGTTGATTTTGTTCATCTGTGTGAAGAAAAGCAACTAGAGAAAGGAACACTCAAATATTGCTTGTACTCATCTTCAAGTTGTTAGGACCCTGTAACGGTATCTAGAAAGTGGAATAACTTGAAGATAATTAAGTCGAGGTCTTTTTTTGTCAAAAAAAATAATTAAGTTGAGGTCTTCATTTTCAGAAAGAGTGGAAAGATCGTGAAATAGGGTAAAATGTTTGTACTTAATGTATATCTGTGCTGTTTGGTCCCCTCCTCTAGCCATTGTGCTTATAAGCCTCCGCCCTCCAGCTTCGTGTTCTTTACATTATAAATGTGCTAACCAGTTGGATTGGGTTCCAGCTATTACTTTATTTACATCTAAGAAGCACGTAATGGTAGGCTGTATATTTGTCACTTTATCATTGTTGCTTAGCTTTTAGAGAGAGCTAGCTTTGTATAGCTAATGCAACTTACCCTCCAACGGCTCAGCTTGGTCTTCAGCACTTGCTGTCGGAGAAATTGGCCAACAGAATCTAATATGCTGATTTCAGTCGTAGATATTAGTTGTTTGATTGCTGGGTCACCAGCACTTCAAGTAATATGTAATTTGTGCTGGGTATCTCAGATATTTTTCAAGTTATGCAATTCTAATGTAATAAAAATCCCAAAATGTCTGATAGGTGCTGATTCAGACATGCATGGTGTCCCCCCCCCCCCCCCCCTCTTTTTTTTTTTTTTCTTTTCTTCAATATATATATATATATATATATTTGAAGTTACCGGTAAGGTTAATAAAGGTTTAGTTTAATTAGTAGTAGAGAGCTAATGAGGGGAACATCTGCAGCCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTCTGGATTTGTCAAGGTGAACTGACTCTTTCTTTCTCGGAATGTTTAGCTGCTTGCCTGCTTCTTTGGGTTTTGGGTGTTGTACATATGATGCTATATGAATTGCATCCCCATTGTATGCTTTAATCTAATAAACTTTCCTATCAAAAGATTTTGGATGATGACAAAATTCTTTTGATCAAGAAAAATTTGTTGAAGTTTATAAGTGACAGACATTCCTTCTTCCATATAACTATGTAAGAGCATTTCCTTGAATGAATCTGTAATGGAGTAAAATGGAATAAAATAGGATCAATGCTATGTTAATTATGAAGGATTCTAGATAGATACTTTTCTTTGTTTTAAGTTTCAACTTTTGTCGTAGTTTGGAGTGGTATAGTTTTTATACAGTTTTCCATTTTGACAGGGTTATGCACTTATTGAATATGAAAACT</genome_strand>
        <mrna_strand>TTTGCTGCAGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTGGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCACCGATGCCAAAGCTGAAATCAGCCATTACAGGTGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGGGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGATTTGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACAAGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTCTGGATTTGTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................GGTTATGCACTTATTGAATATGAAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E485702" ref_strand="+" ref_description="SGN-E485702 [cSTE-19-M9]">
      <seq>caaattctctctttttgcagcggcgaaaatggcgaacccggaggaggctgtcgatttcgagccagaggaagacgatctgatggacgaagacgttgacgcttcatcacctagggcatcgatgccaaagctgaaatcagccattacaagcggcggcggcggttcttctgcttctcagaaaatcaaaggacgtggtttccgtgaagagactgctgaggctgaaaggaatgctcgcctttctgctcgttttgattctcttgactccgaaggtggccctggacctgaacgatccattgaaggatggattgttttagtcactggagttaatgaggaggcacaagaagatgatcttcataatacatttggtgagttcggggagatcaagaatttgcatttgaatctggatcggcggttctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80552" stop="77985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80252" g_stop="79963" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79962" i_stop="78412" i_length="1551">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.156" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78411" g_stop="78285" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="415" r_length="128" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E485702" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E485702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80252" e_stop="79963"/>
          <exon e_start="78411" e_stop="78285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATTCTCTCTTTTTGCTGCAGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTGGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCACCGATGCCAAAGCTGAAATCAGCCATTACAGGTGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGGGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGATTTGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGATGTTAGTTTCTACTCTTAACTCATCTTTTATATAACCCAACGAACTTTCTACCTCATTTTTTTCTTTTTTTTTTTAGAATTTTGTTCAAATTAGGGGAAAATGTTGCAGTGGGTCAACAATTCATCAAAACCCCAGATTCTCTCTTTGTGCGCTGGTGTTAAAGAATTGTTACCTATAATTGTTTTCTCTATGATTTTGTGACGGGAGGTTGATAGTTGGGGTAATGGGTAAAGTGTCTTAAGGAAATGTTTTAGTCTGGTTAGAGACTTCTAATTAAGAGAATATCTAGGTTTAGGATGTCTTAATTTTAACAGGTTAAAAATTGCTTATTCTTATAATTGTTTTTCTTTTGGTTTTTGTGTTATGAATAAAGAAAACTGCTACAGGTTGGTAATCCGCGTAATGTAATGACCCTCGAAGGAGTGTGTTTAGTTTGGTTTACAGTGTTGAATCTAGAGAACATCTAACTTTAGAAGACTAACATTGAACACTCAAGTGTTGACCCTGTTATCTTTAGAGTTTTTTCACGAGGTGCTTTTATGGTTTTATTGAGTGTATTTAGTATACTTTCTAGTTTTGGTTTAATTTGTTATCTGTTATTGATTAGTTGAACGATATTAAATTGCTTTTGTGAATGAGACCATGTTAAGGTTTCACCTACATTGTATAAGCAAGCAGAATTAGAGAAGTGAATAAAGAAGTTAGGACCTACTGCTAGTAGAAGTTGATTTTGTTCATCTGTGTGAAGAAAAGCAACTAGAGAAAGGAACACTCAAATATTGCTTGTACTCATCTTCAAGTTGTTAGGACCCTGTAACGGTATCTAGAAAGTGGAATAACTTGAAGATAATTAAGTCGAGGTCTTTTTTTGTCAAAAAAAATAATTAAGTTGAGGTCTTCATTTTCAGAAAGAGTGGAAAGATCGTGAAATAGGGTAAAATGTTTGTACTTAATGTATATCTGTGCTGTTTGGTCCCCTCCTCTAGCCATTGTGCTTATAAGCCTCCGCCCTCCAGCTTCGTGTTCTTTACATTATAAATGTGCTAACCAGTTGGATTGGGTTCCAGCTATTACTTTATTTACATCTAAGAAGCACGTAATGGTAGGCTGTATATTTGTCACTTTATCATTGTTGCTTAGCTTTTAGAGAGAGCTAGCTTTGTATAGCTAATGCAACTTACCCTCCAACGGCTCAGCTTGGTCTTCAGCACTTGCTGTCGGAGAAATTGGCCAACAGAATCTAATATGCTGATTTCAGTCGTAGATATTAGTTGTTTGATTGCTGGGTCACCAGCACTTCAAGTAATATGTAATTTGTGCTGGGTATCTCAGATATTTTTCAAGTTATGCAATTCTAATGTAATAAAAATCCCAAAATGTCTGATAGGTGCTGATTCAGACATGCATGGTGTCCCCCCCCCCCCCCCCCTCTTTTTTTTTTTTTTCTTTTCTTCAATATATATATATATATATATATTTGAAGTTACCGGTAAGGTTAATAAAGGTTTAGTTTAATTAGTAGTAGAGAGCTAATGAGGGGAACATCTGCAGCCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTC-GTTCTGG</genome_strand>
        <mrna_strand>CAAATTCTCTC-TTTT--TGCAGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTCGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCATCGATGCCAAAGCTGAAATCAGCCATTACAAGCGGCGGCGGCGGTTCTTCTGCTTCTCAGAAAATCAAAGGACGTGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGTTTTGATTCTCTTGACTCCGAAGGTGGCCCTGGACCTGAACGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGAAGGATGGATTGTTTTAGTCACTGGAGTTAATGAGGAGGCACAAGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGGCGGTTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E583385" ref_strand="+" ref_description="SGN-E583385 [9206]">
      <seq>ccaaattctctctttttgcagcggcgaaaatggcgaacccggaggaggctgtcgatttcgagccagaggaagacgatctgatggacgaggatgttgacgcttcatcacctagggcaccgatgccaaagctgaaatcagccattacaggcggcggcggcggttcttctgcttctaagaaaatcaaaggacgtggtttccgtgaagagactgctgaggctgacaggaatgctcgcctttctgctcgattcgattcacttgactccgaaggtggccctggacctgaacgatccattgaaggatggattattttagtcactggagttaatgaggaggcacaagacgatgatcttcataatacatttggtgagttcggggagatccagaatttgcctttgaatctggatcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80553" stop="77993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80253" g_stop="79963" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79962" i_stop="78412" i_length="1551">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.156" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78411" g_stop="78293" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="407" r_length="119" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E583385" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E583385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80253" e_stop="79963"/>
          <exon e_start="78411" e_stop="78293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGATTCTCTCTTTTTGCTGCAGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTGGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCACCGATGCCAAAGCTGAAATCAGCCATTACAGGTGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGGGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGATTTGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGATGTTAGTTTCTACTCTTAACTCATCTTTTATATAACCCAACGAACTTTCTACCTCATTTTTTTCTTTTTTTTTTTAGAATTTTGTTCAAATTAGGGGAAAATGTTGCAGTGGGTCAACAATTCATCAAAACCCCAGATTCTCTCTTTGTGCGCTGGTGTTAAAGAATTGTTACCTATAATTGTTTTCTCTATGATTTTGTGACGGGAGGTTGATAGTTGGGGTAATGGGTAAAGTGTCTTAAGGAAATGTTTTAGTCTGGTTAGAGACTTCTAATTAAGAGAATATCTAGGTTTAGGATGTCTTAATTTTAACAGGTTAAAAATTGCTTATTCTTATAATTGTTTTTCTTTTGGTTTTTGTGTTATGAATAAAGAAAACTGCTACAGGTTGGTAATCCGCGTAATGTAATGACCCTCGAAGGAGTGTGTTTAGTTTGGTTTACAGTGTTGAATCTAGAGAACATCTAACTTTAGAAGACTAACATTGAACACTCAAGTGTTGACCCTGTTATCTTTAGAGTTTTTTCACGAGGTGCTTTTATGGTTTTATTGAGTGTATTTAGTATACTTTCTAGTTTTGGTTTAATTTGTTATCTGTTATTGATTAGTTGAACGATATTAAATTGCTTTTGTGAATGAGACCATGTTAAGGTTTCACCTACATTGTATAAGCAAGCAGAATTAGAGAAGTGAATAAAGAAGTTAGGACCTACTGCTAGTAGAAGTTGATTTTGTTCATCTGTGTGAAGAAAAGCAACTAGAGAAAGGAACACTCAAATATTGCTTGTACTCATCTTCAAGTTGTTAGGACCCTGTAACGGTATCTAGAAAGTGGAATAACTTGAAGATAATTAAGTCGAGGTCTTTTTTTGTCAAAAAAAATAATTAAGTTGAGGTCTTCATTTTCAGAAAGAGTGGAAAGATCGTGAAATAGGGTAAAATGTTTGTACTTAATGTATATCTGTGCTGTTTGGTCCCCTCCTCTAGCCATTGTGCTTATAAGCCTCCGCCCTCCAGCTTCGTGTTCTTTACATTATAAATGTGCTAACCAGTTGGATTGGGTTCCAGCTATTACTTTATTTACATCTAAGAAGCACGTAATGGTAGGCTGTATATTTGTCACTTTATCATTGTTGCTTAGCTTTTAGAGAGAGCTAGCTTTGTATAGCTAATGCAACTTACCCTCCAACGGCTCAGCTTGGTCTTCAGCACTTGCTGTCGGAGAAATTGGCCAACAGAATCTAATATGCTGATTTCAGTCGTAGATATTAGTTGTTTGATTGCTGGGTCACCAGCACTTCAAGTAATATGTAATTTGTGCTGGGTATCTCAGATATTTTTCAAGTTATGCAATTCTAATGTAATAAAAATCCCAAAATGTCTGATAGGTGCTGATTCAGACATGCATGGTGTCCCCCCCCCCCCCCCCCTCTTTTTTTTTTTTTTCTTTTCTTCAATATATATATATATATATATATTTGAAGTTACCGGTAAGGTTAATAAAGGTTTAGTTTAATTAGTAGTAGAGAGCTAATGAGGGGAACATCTGCAGCCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGT</genome_strand>
        <mrna_strand>CCAAATTCTCTC-TTTT--TGCAGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTCGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAGGATGTTGACGCTTCATCACCTAGGGCACCGATGCCAAAGCTGAAATCAGCCATTACAGGCGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGTGGTTTCCGTGAAGAGACTGCTGAGGCTGACAGGAATGCTCGCCTTTCTGCTCGATTCGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGAAGGATGGATTATTTTAGTCACTGGAGTTAATGAGGAGGCACAAGACGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCCAGAATTTGCCTTTGAATCTGGATCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204443" ref_strand="+" ref_description="SGN-E204443 [cLEC-13-N16]">
      <seq>cagcttcaacaaaaatactttattagtactaataaataaatatatacagttgaaacaagcgaatcaaaaccccagattctctctttttgctgcagcggcgaaaatggcgaacccggaggaggctgtggatttcgagccagaggaagacgatctgatggacgaagacgttgacgcttcatcacctagggcaccgatgccaaagctgaaatcagccattacaggtggcggcggcggttcttctgcttctaagaaaatcaaaggacggggtttccgtgaagagactgctgaggctgaaaggaatgctcgcctttctgctcgatttgattcacttgactccgaaggtggccctggacctgaacgatccattgaaggatggattattttagtcactggagtcaatgaggaggcacacgaagatgatcttcataatacatttggtgagttcggggagatcaagaatttgcatttgaatctggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80624" stop="77995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80324" g_stop="79963" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79962" i_stop="78412" i_length="1551">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.156" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78411" g_stop="78295" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="479" r_length="117" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E204443" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80324" e_stop="79963"/>
          <exon e_start="78411" e_stop="78295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTTCAACAAAAATACTTTATTAGTACTAATAAATAAATATATACAGTTGAAACAAGCGAATCAAAACCCCAGATTCTCTCTTTTTGCTGCAGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTGGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCACCGATGCCAAAGCTGAAATCAGCCATTACAGGTGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGGGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGATTTGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGATGTTAGTTTCTACTCTTAACTCATCTTTTATATAACCCAACGAACTTTCTACCTCATTTTTTTCTTTTTTTTTTTAGAATTTTGTTCAAATTAGGGGAAAATGTTGCAGTGGGTCAACAATTCATCAAAACCCCAGATTCTCTCTTTGTGCGCTGGTGTTAAAGAATTGTTACCTATAATTGTTTTCTCTATGATTTTGTGACGGGAGGTTGATAGTTGGGGTAATGGGTAAAGTGTCTTAAGGAAATGTTTTAGTCTGGTTAGAGACTTCTAATTAAGAGAATATCTAGGTTTAGGATGTCTTAATTTTAACAGGTTAAAAATTGCTTATTCTTATAATTGTTTTTCTTTTGGTTTTTGTGTTATGAATAAAGAAAACTGCTACAGGTTGGTAATCCGCGTAATGTAATGACCCTCGAAGGAGTGTGTTTAGTTTGGTTTACAGTGTTGAATCTAGAGAACATCTAACTTTAGAAGACTAACATTGAACACTCAAGTGTTGACCCTGTTATCTTTAGAGTTTTTTCACGAGGTGCTTTTATGGTTTTATTGAGTGTATTTAGTATACTTTCTAGTTTTGGTTTAATTTGTTATCTGTTATTGATTAGTTGAACGATATTAAATTGCTTTTGTGAATGAGACCATGTTAAGGTTTCACCTACATTGTATAAGCAAGCAGAATTAGAGAAGTGAATAAAGAAGTTAGGACCTACTGCTAGTAGAAGTTGATTTTGTTCATCTGTGTGAAGAAAAGCAACTAGAGAAAGGAACACTCAAATATTGCTTGTACTCATCTTCAAGTTGTTAGGACCCTGTAACGGTATCTAGAAAGTGGAATAACTTGAAGATAATTAAGTCGAGGTCTTTTTTTGTCAAAAAAAATAATTAAGTTGAGGTCTTCATTTTCAGAAAGAGTGGAAAGATCGTGAAATAGGGTAAAATGTTTGTACTTAATGTATATCTGTGCTGTTTGGTCCCCTCCTCTAGCCATTGTGCTTATAAGCCTCCGCCCTCCAGCTTCGTGTTCTTTACATTATAAATGTGCTAACCAGTTGGATTGGGTTCCAGCTATTACTTTATTTACATCTAAGAAGCACGTAATGGTAGGCTGTATATTTGTCACTTTATCATTGTTGCTTAGCTTTTAGAGAGAGCTAGCTTTGTATAGCTAATGCAACTTACCCTCCAACGGCTCAGCTTGGTCTTCAGCACTTGCTGTCGGAGAAATTGGCCAACAGAATCTAATATGCTGATTTCAGTCGTAGATATTAGTTGTTTGATTGCTGGGTCACCAGCACTTCAAGTAATATGTAATTTGTGCTGGGTATCTCAGATATTTTTCAAGTTATGCAATTCTAATGTAATAAAAATCCCAAAATGTCTGATAGGTGCTGATTCAGACATGCATGGTGTCCCCCCCCCCCCCCCCCTCTTTTTTTTTTTTTTCTTTTCTTCAATATATATATATATATATATATTTGAAGTTACCGGTAAGGTTAATAAAGGTTTAGTTTAATTAGTAGTAGAGAGCTAATGAGGGGAACATCTGCAGCCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATC</genome_strand>
        <mrna_strand>CAGCTTCAACAAAAATACTTTATTAGTACTAATAAATAAATATATACAGTTGAAACAAGCGAATCAAAACCCCAGATTCTCTCTTTTTGCTGCAGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTGGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCACCGATGCCAAAGCTGAAATCAGCCATTACAGGTGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGGGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGATTTGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258930" ref_strand="+" ref_description="SGN-E258930 [cLEG-41-D23]">
      <seq>cagattctctctttttgctgcagcggcgaaaatggcgaacccggaggaggctgtggatttcgagccagaggaagacgatctgatggacgaagacgttgacgcttcatcacctagggcaccgatgccaaagctgaaatcagccattacaggtggcggcggcggttcttctgcttctaagaaaatcaaaggacggggtttccgtgaagagactgctgaggctgaaaggaatgctcgcctttctgctcgatttgattcacttgactccgaaggtggccctggacctgaacgatccattgaaggatggattattttagtcactggagtcaatgaggaggcacacgaagatgatcttcataatacatttggtgagttcggggagatcaagaatttgcatttgaatctggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80552" stop="77995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80252" g_stop="79963" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79962" i_stop="78412" i_length="1551">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.156" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78411" g_stop="78295" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="407" r_length="117" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E258930" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80252" e_stop="79963"/>
          <exon e_start="78411" e_stop="78295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATTCTCTCTTTTTGCTGCAGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTGGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCACCGATGCCAAAGCTGAAATCAGCCATTACAGGTGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGGGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGATTTGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGATGTTAGTTTCTACTCTTAACTCATCTTTTATATAACCCAACGAACTTTCTACCTCATTTTTTTCTTTTTTTTTTTAGAATTTTGTTCAAATTAGGGGAAAATGTTGCAGTGGGTCAACAATTCATCAAAACCCCAGATTCTCTCTTTGTGCGCTGGTGTTAAAGAATTGTTACCTATAATTGTTTTCTCTATGATTTTGTGACGGGAGGTTGATAGTTGGGGTAATGGGTAAAGTGTCTTAAGGAAATGTTTTAGTCTGGTTAGAGACTTCTAATTAAGAGAATATCTAGGTTTAGGATGTCTTAATTTTAACAGGTTAAAAATTGCTTATTCTTATAATTGTTTTTCTTTTGGTTTTTGTGTTATGAATAAAGAAAACTGCTACAGGTTGGTAATCCGCGTAATGTAATGACCCTCGAAGGAGTGTGTTTAGTTTGGTTTACAGTGTTGAATCTAGAGAACATCTAACTTTAGAAGACTAACATTGAACACTCAAGTGTTGACCCTGTTATCTTTAGAGTTTTTTCACGAGGTGCTTTTATGGTTTTATTGAGTGTATTTAGTATACTTTCTAGTTTTGGTTTAATTTGTTATCTGTTATTGATTAGTTGAACGATATTAAATTGCTTTTGTGAATGAGACCATGTTAAGGTTTCACCTACATTGTATAAGCAAGCAGAATTAGAGAAGTGAATAAAGAAGTTAGGACCTACTGCTAGTAGAAGTTGATTTTGTTCATCTGTGTGAAGAAAAGCAACTAGAGAAAGGAACACTCAAATATTGCTTGTACTCATCTTCAAGTTGTTAGGACCCTGTAACGGTATCTAGAAAGTGGAATAACTTGAAGATAATTAAGTCGAGGTCTTTTTTTGTCAAAAAAAATAATTAAGTTGAGGTCTTCATTTTCAGAAAGAGTGGAAAGATCGTGAAATAGGGTAAAATGTTTGTACTTAATGTATATCTGTGCTGTTTGGTCCCCTCCTCTAGCCATTGTGCTTATAAGCCTCCGCCCTCCAGCTTCGTGTTCTTTACATTATAAATGTGCTAACCAGTTGGATTGGGTTCCAGCTATTACTTTATTTACATCTAAGAAGCACGTAATGGTAGGCTGTATATTTGTCACTTTATCATTGTTGCTTAGCTTTTAGAGAGAGCTAGCTTTGTATAGCTAATGCAACTTACCCTCCAACGGCTCAGCTTGGTCTTCAGCACTTGCTGTCGGAGAAATTGGCCAACAGAATCTAATATGCTGATTTCAGTCGTAGATATTAGTTGTTTGATTGCTGGGTCACCAGCACTTCAAGTAATATGTAATTTGTGCTGGGTATCTCAGATATTTTTCAAGTTATGCAATTCTAATGTAATAAAAATCCCAAAATGTCTGATAGGTGCTGATTCAGACATGCATGGTGTCCCCCCCCCCCCCCCCCTCTTTTTTTTTTTTTTCTTTTCTTCAATATATATATATATATATATATTTGAAGTTACCGGTAAGGTTAATAAAGGTTTAGTTTAATTAGTAGTAGAGAGCTAATGAGGGGAACATCTGCAGCCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATC</genome_strand>
        <mrna_strand>CAGATTCTCTCTTTTTGCTGCAGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTGGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCACCGATGCCAAAGCTGAAATCAGCCATTACAGGTGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGGGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGATTTGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277649" ref_strand="+" ref_description="SGN-E277649 [cLER-6-I12]">
      <seq>tttgcctggacacagcttcaacaaaaatactttattagtactaataaataaatatatacagttgaaacaagcgaatcaaaaccccagattctctctttttgctgcagcggcgaaaatggcgaacccggaggaggctgtggatttcgagccagaggaagacgatctgatggacgaagacgttgacgcttcatcacctagggcaccgatgccaaagctgaaatcagccattacaggtggcggcggcggttcttctgcttctaagaaaatcaaaggacggggtttccgtgaagagactgctgaggctgaaaggaatgctcgcctttctgctcgatttgattcacttgactccgaaggtggccctggacctgaacgatccattgaaggatggattattttagtcactggagtcaatgaggaggcacaagaagatgatcttcataatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80636" stop="78042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80336" g_stop="79963" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79962" i_stop="78412" i_length="1551">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.156" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78411" g_stop="78342" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="444" r_length="70" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E277649" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80336" e_stop="79963"/>
          <exon e_start="78411" e_stop="78342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCCTGGACACAGCTTCAACAAAAATACTTTATTAGTACTAATAAATAAATATATACAGTTGAAACAAGCGAATCAAAACCCCAGATTCTCTCTTTTTGCTGCAGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTGGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCACCGATGCCAAAGCTGAAATCAGCCATTACAGGTGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGGGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGATTTGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGATGTTAGTTTCTACTCTTAACTCATCTTTTATATAACCCAACGAACTTTCTACCTCATTTTTTTCTTTTTTTTTTTAGAATTTTGTTCAAATTAGGGGAAAATGTTGCAGTGGGTCAACAATTCATCAAAACCCCAGATTCTCTCTTTGTGCGCTGGTGTTAAAGAATTGTTACCTATAATTGTTTTCTCTATGATTTTGTGACGGGAGGTTGATAGTTGGGGTAATGGGTAAAGTGTCTTAAGGAAATGTTTTAGTCTGGTTAGAGACTTCTAATTAAGAGAATATCTAGGTTTAGGATGTCTTAATTTTAACAGGTTAAAAATTGCTTATTCTTATAATTGTTTTTCTTTTGGTTTTTGTGTTATGAATAAAGAAAACTGCTACAGGTTGGTAATCCGCGTAATGTAATGACCCTCGAAGGAGTGTGTTTAGTTTGGTTTACAGTGTTGAATCTAGAGAACATCTAACTTTAGAAGACTAACATTGAACACTCAAGTGTTGACCCTGTTATCTTTAGAGTTTTTTCACGAGGTGCTTTTATGGTTTTATTGAGTGTATTTAGTATACTTTCTAGTTTTGGTTTAATTTGTTATCTGTTATTGATTAGTTGAACGATATTAAATTGCTTTTGTGAATGAGACCATGTTAAGGTTTCACCTACATTGTATAAGCAAGCAGAATTAGAGAAGTGAATAAAGAAGTTAGGACCTACTGCTAGTAGAAGTTGATTTTGTTCATCTGTGTGAAGAAAAGCAACTAGAGAAAGGAACACTCAAATATTGCTTGTACTCATCTTCAAGTTGTTAGGACCCTGTAACGGTATCTAGAAAGTGGAATAACTTGAAGATAATTAAGTCGAGGTCTTTTTTTGTCAAAAAAAATAATTAAGTTGAGGTCTTCATTTTCAGAAAGAGTGGAAAGATCGTGAAATAGGGTAAAATGTTTGTACTTAATGTATATCTGTGCTGTTTGGTCCCCTCCTCTAGCCATTGTGCTTATAAGCCTCCGCCCTCCAGCTTCGTGTTCTTTACATTATAAATGTGCTAACCAGTTGGATTGGGTTCCAGCTATTACTTTATTTACATCTAAGAAGCACGTAATGGTAGGCTGTATATTTGTCACTTTATCATTGTTGCTTAGCTTTTAGAGAGAGCTAGCTTTGTATAGCTAATGCAACTTACCCTCCAACGGCTCAGCTTGGTCTTCAGCACTTGCTGTCGGAGAAATTGGCCAACAGAATCTAATATGCTGATTTCAGTCGTAGATATTAGTTGTTTGATTGCTGGGTCACCAGCACTTCAAGTAATATGTAATTTGTGCTGGGTATCTCAGATATTTTTCAAGTTATGCAATTCTAATGTAATAAAAATCCCAAAATGTCTGATAGGTGCTGATTCAGACATGCATGGTGTCCCCCCCCCCCCCCCCCTCTTTTTTTTTTTTTTCTTTTCTTCAATATATATATATATATATATATTTGAAGTTACCGGTAAGGTTAATAAAGGTTTAGTTTAATTAGTAGTAGAGAGCTAATGAGGGGAACATCTGCAGCCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATAC</genome_strand>
        <mrna_strand>TTTGCCTGGACACAGCTTCAACAAAAATACTTTATTAGTACTAATAAATAAATATATACAGTTGAAACAAGCGAATCAAAACCCCAGATTCTCTCTTTTTGCTGCAGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTGGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCACCGATGCCAAAGCTGAAATCAGCCATTACAGGTGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGGGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGATTTGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACAAGAAGATGATCTTCATAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E538348" ref_strand="+" ref_description="SGN-E538348 [TUS-57-H19](-)">
      <seq>aggcagatggtggtcccagaagatttggcaatatatgtattgttacgaagtggataaagacgactcagacttcattgattttgcgatgtctggaggtgaactatattgagtcaacagaaccacctttgtgtgttttacacattcaatatcccgactggcctgaccatggagttccaaaggacactcttgctgttcgtgaaatactgaaacaaacatttagtgtcccacccagtcttggaccaattgtggtgcactgcagtgcaggtattggtaggactggaacatactgtgcaatccataataccatccaaagaatattgggtggagataagtctgctctagatctagttaacacaataaccatttttaggtctcagcgaattgggatggttcaaaccatggagcaatacctcttttgctatgatgccgttatcgatgagcttgaagacctcatttcagatagccaatgaagaagagagttcataatgcaactggttcttccttgctgcaatcatgcttctgtacttgcttacaaatgagaagaaatagaacaataatttgttctgaagaagcaaatcagttgggtccacttgagtttcttactgttcttaccatgtaggaataagcataaaacgtgcaaaatatcgtatgttgtatttctgtttggaagtatacatgcttttagagagggaaaaagaacttatttaacacactcttaatcgtaccctgcttattgttgattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84507" stop="7756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84207" g_stop="84098" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84097" i_stop="82776" i_length="1322">
            <donor d_prob="0.857" d_score="1.00"/>
            <acceptor a_prob="0.116" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82775" g_stop="82627" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="259" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82626" i_stop="82534" i_length="93">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82533" g_stop="82392" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="401" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82391" i_stop="82060" i_length="332">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82059" g_stop="81973" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="488" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81972" i_stop="81898" i_length="75">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.843" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81897" g_stop="81642" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="744" r_length="256" r_score="0.996"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="81641" i_stop="81111" i_length="531">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="81110" g_stop="81075" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="745" r_stop="780" r_length="36" r_score="0.583"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E538348" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84207" e_stop="84098"/>
          <exon e_start="82775" e_stop="82627"/>
          <exon e_start="82533" e_stop="82392"/>
          <exon e_start="82059" e_stop="81973"/>
          <exon e_start="81897" e_stop="81642"/>
          <exon e_start="81110" e_stop="81075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCAGATGGTGGTCCCAGAAGATTTGGCAATATATGTATTGTTACGAAGTGGATAAAGACGACTCAGACTTCATTGATTTTGCGATGTCTGGAGGTGAACTATATTGAGGTTAGTAAATTTTTTTCTGTCCGTGTTATACACAAGGAGAAGAGCATGAAGAATCTTATTATGTTGGACATGTATATGGAACCGCTGGAAACTATTTACCTGTTTCATTTGATGGAGAGTGAGAGTTGCTGATGTACATATTTTGATTTCTGCAGCATTTTACATATCCAGACTGATACACTTCTTCTCCAGTAAATATGAGTCCTTGGCTTTAGAATACCCTTCTTTAAAGCTCTATGATCACGCATTGCTCTTTTTGCATAAGTTCTCCCAAAATTTGGGTTTTTTTTTATGAGAGCAAGAATAAAAAGGAATTGCAACATATGGGGAAAATTTTGCAATACTATATGATGATTTCCATCAGTATTGCCTTCAACAATCAATTGGATAGTATGGTGTCATTTTTGCTCGTTGTCTCTTCTTGTATATAATCGATGCAATTCCATCTCTAGCTTCAATTAGTGGTTTTAAACCAAACAGGAAGACTGATTGACTTGTAAACCATCCAGATATGGCTTTGGAAACCTGCCTTTTGTCTATTTCAAGGCCTTGTCTTAGTTGCAGCAAGACTTTTTAAGTAACACAGATAATGATTATGAATGCTAATTAAGTGGAAAAGATTCTTTGGTGGTTCCTCACCCCTCCTTCACTATTTTCAAAGTCCCATTTTGAAGCACTTTATTCTACTGTGGAATCGTTTCTGCCTGCATTCTTGTTCCTTCTTTTACAATCTTTGATGCTTGGATAGACTGTTTAAGATACATGACAACACCTTTTTCCCTCTTCCTTACATGAGGACAACTTGAATGCTAGTTCTATTTGTTTTATCTTGTGTTTAAATTACTTTTATAGCTGTGTACACACCATCCTCGCCAGATCTCACTTGTGGGATTACACTGGGTATGTTGTTATAGCAGATCTAGTTTTTCTCTTGCCATGTGTAGTAGGTGGCAATAGACGACTTGTTTGCGTGAGAAGGCTCACAATTGGTACTACAGTCATTGCGGCAATCCCTTAGCGATCTCTTTCAAGTAATTCTGGCATTTTTATTGTTGGGAGTAAAGAAAAACTTCAGTCTTTCACTTTGCAGTATAAATGCTTTATTTCGTATTATGATATCAGAAATGTGGTTTCTTTAACCTTGTACTTTTAGTGGAATTACCTTTTGGCAATCTTGTAAGTAGTTCATACAATGGTATGTAATTGTGGCCCAATTCTCCCACTCACTTGTCATCCTTACATATAGTTAACACTAATTTCTTGCCCATATTATGAGGGAAATGGCAATAAATGTGTGATCTTTTCTCCTTGCTATTTGCCAGTCAACAGAACCACCTTTGTGTGTTTTACACATTCAATATCCCGACTGGCCTGACCATGGAGTTCCAAAGGACACTCTTGCTGTTCGTGAAATACTGAAACAAACATTTAGTGTCCCACCCAGTCTTGGACCAATTGTGGTGCACTGCAGGTTTCTGTCTATCATATTCCCTGTAGATGTGCCTTTTTTAATGATTCTGTAATTTATCCTTTCTAAAGCCTGACATCACATTCTCTTACACAGTGCAGGTATTGGTAGGACTGGAACATACTGTGCAATCCATAATACCATCCAAAGAATATTGGGTGGAGATAAGTCTGCTCTAGATCTAGTTAACACAATAACCATTTTTAGGTCTCAGCGAATTGGGATGGTTCAAACCATGGTACAACAGCTTCTCTTCGTTATTGAAATTGTGTAATACAACTAAAGCAGATAACTGTTGGAGTAGTCGAGGTTTGCAAAAGCTGGCCCGGACACTACTGTCATAAAAATTTTTATATATAGTTGCCCCAGTGTCCTTATTTTTTGTTTAAAAGCTAGTCAGATGTCTTACATTTTATTCGCTTTACTCTCTTTTTCTCTTTTGGTATTTGTTACACTTACCCCAAGAATCTATACTACTGTGTTTCATCATTCTTAACTAATCTTTGCTCTTAGGTTCTTAAGTACTTGTTGCATGGAATGTCTGTACTAAACTACTATTTTATATTACAGGAGCAATACCTCTTTTGCTATGATGCCGTTATCGATGAGCTTGAAGACCTCATTTCAGATAGCCAATGAAGAAGAGAGTTCATAATGGTAATTTTCAATTTTTCAGTGTCAGCCTCATTTTTTCGTAATTTAGTTCTAACCATTTCATGTGTTGTATTCCAGCAACTGGTTCTTCCTTGCTGCAATCATGCTTCTGTACTTGCTTACAAATGAGAAGAAATAGAACAATAATTTGTTCTGAAGAAGCAAATCAGTTGGGTCCACTTGAGTTTCTTACTGTTCTTACCATGTAGGAATAAGCATAAAACGTGCAAAATATCGTATGTTGTATTTCTGTTTGGAAGTATACATGCTTTTAGAGAGGGAAAAAGAACTTATTTAACACACTCTTAATCGTACCCTGCTTATTGTTGATTACATGTATGGTAAGTTGATGATGTTCAAGGTAGCTTTTACACCAACTTCCTTGCAATGGTTTATGTAAAGACCTTATATAAAATAGAGCTTTGTCGTGCTTTGGTGCTTGATGTGACTGGGGAGGGGGGAGGCTTCAAATAAAGTGCGTAAAATGAACCTATCCTTCTCGGGGGGAGGCTTCAAATAAAGTGCGTAAAATGAACCTATCCTTCTCAGACTTCATTTGCGGAACTTTTTTATAATGATATGGTATTCTTTGGTGTAATTAGTTGTGAACAAAAACAACCCATTAATATCTTCTGGTAAATAAGAAGTATAATAAGTGGCTTAGTGTAGTTAAATTGTGGTTTCACATTCATACACCATGACGAAATTGTCAAGAGTACACAAACCTACTTTAACAATACAATATCACACAAAAGCTTATATATTTGTTTTCTCTAACTTTTAACATTATGTAGTTCAAGTAGATAGTATTCTTTCAAGGTGAATTTCAAACTCTATTATGTCAAGTTCTAATCTTAGGAGGTTCAAAAAATGTATATCTATACATAGAAAGATTTAAAAA</genome_strand>
        <mrna_strand>AGGCAGATGGTGGTCCCAGAAGATTTGGCAATATATGTATTGTTACGAAGTGGATAAAGACGACTCAGACTTCATTGATTTTGCGATGTCTGGAGGTGAACTATATTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACAGAACCACCTTTGTGTGTTTTACACATTCAATATCCCGACTGGCCTGACCATGGAGTTCCAAAGGACACTCTTGCTGTTCGTGAAATACTGAAACAAACATTTAGTGTCCCACCCAGTCTTGGACCAATTGTGGTGCACTGCAG.............................................................................................TGCAGGTATTGGTAGGACTGGAACATACTGTGCAATCCATAATACCATCCAAAGAATATTGGGTGGAGATAAGTCTGCTCTAGATCTAGTTAACACAATAACCATTTTTAGGTCTCAGCGAATTGGGATGGTTCAAACCATG............................................................................................................................................................................................................................................................................................................................................GAGCAATACCTCTTTTGCTATGATGCCGTTATCGATGAGCTTGAAGACCTCATTTCAGATAGCCAATGAAGAAGAGAGTTCATAATG...........................................................................CAACTGGTTCTTCCTTGCTGCAATCATGCTTCTGTACTTGCTTACAAATGAGAAGAAATAGAACAATAATTTGTTCTGAAGAAGCAAATCAGTTGGGTCCACTTGAGTTTCTTACTGTTCTTACCATGTAGGAATAAGCATAAAACGTGCAAAATATCGTATGTTGTATTTCTGTTTGGAAGTATACATGCTTTTAGAGAGGGAAAAAGAACTTATTTAACACACTCTTAATCGTACCCTGCTTATTGTTGATTAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745399" ref_strand="+" ref_description="SGN-E745399 [GI|47105679]">
      <seq>ggtacaaagaaagcagtgaagtgaacatcctaccacggggtgcggactgtccattcggaatcggaggcagatatcagcgatggccaccgccggtaaactcgtgtcgtcgtcgtcgtcgtcacccaagcctttcgatttctccgacgattcagttcctaagagagtcgttctgtcgagtgatcagcagcgttattgcttggaagtactcaaagtcttcaaggacaagaggttttctgctcccgaaaaaatccgccaagagttcatgacgttgcaggcaactaggatgagagcttcagaaatgaaaagtagatgctcaatggctttgaacagcgcaaacattagcaaaaatcgatacactgatgttctgccatttgacaataacagggttgttttggacccaccagctagaggatatataaatgcaagcttcattaagatatctgaagacgtgtctcagtttattgcaacacaaggtcctctacaacacacttttgaagacttctgggaaatgataatccagcatcgctgtcctgtgattgtgatgcttacacaattgtttgacaactacaagattgtcaagtgtggggattattttcaggcagatggtggtcccagaagatttggcaatatatgtattgttacgaagtggataaagacgactcagacttcattgattttgcgatgtctggaggtgaactatattgagtcaacagaaccacctttgtgtgttttacacattcaatatcccgactggcctgaccatggagttccaaaggacactcttgctgttcgtgaaatactgaaacaaacatttagtgtcccacccagtcttggaccaattgtggtgcactgcagtgcaggtattggtaggactggaacatactgtgcaatccataataccatccaaagaatattgggtggagataagtctgctctagatctagttaacacaataaccatttttaggtctcagcgaattgggatggttcaaaccatggagcaatacctcttttgctatgatgccgttatcgatgagcttgaagacctcatttcagatagccaatgaagaagagagttcataatgcaactggttcttccttgctgcaatcatgcttctgtacttgcttacaaatgagaagaaatagaacaataatttgttctgaagaagcaaatcagttgggtccacttgagtttcttactgttcttaccatgtaggaataagcataaaacgtgcaaaatatcgtatgttgtatttctgtttggaagtatacatgcttttagagagggaaaaagaacttatttaacacactcttaatcgtaccctgcttattgttgattacatgtatggtaagttgatgatgttcaaggtagcttttaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90055" stop="62211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89756" g_stop="89483" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89482" i_stop="86606" i_length="2877">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.637" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86605" g_stop="86509" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="371" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86508" i_stop="86417" i_length="92">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86416" g_stop="86352" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="436" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86351" i_stop="86223" i_length="129">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86222" g_stop="86088" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="571" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86087" i_stop="84233" i_length="1855">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84232" g_stop="84098" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="706" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84097" i_stop="82776" i_length="1322">
            <donor d_prob="0.857" d_score="1.00"/>
            <acceptor a_prob="0.116" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82775" g_stop="82627" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="707" r_stop="855" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="82626" i_stop="82534" i_length="93">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="82533" g_stop="82392" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="856" r_stop="997" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="82391" i_stop="82060" i_length="332">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="82059" g_stop="81973" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="998" r_stop="1084" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="81972" i_stop="81898" i_length="75">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.843" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="81897" g_stop="81610" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1085" r_stop="1372" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="81609" i_stop="81374" i_length="236">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.545" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="81373" g_stop="81348" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1373" r_stop="1398" r_length="26" r_score="0.615"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E745399" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89756" e_stop="89483"/>
          <exon e_start="86605" e_stop="86509"/>
          <exon e_start="86416" e_stop="86352"/>
          <exon e_start="86222" e_stop="86088"/>
          <exon e_start="84232" e_stop="84098"/>
          <exon e_start="82775" e_stop="82627"/>
          <exon e_start="82533" e_stop="82392"/>
          <exon e_start="82059" e_stop="81973"/>
          <exon e_start="81897" e_stop="81610"/>
          <exon e_start="81373" e_stop="81348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTACAAAGAAAGCAGTGAAGTGAACATCCTACCACGGGGTGCGGACTGTCCATTCGGAATCGGAGGCAGATATCAGCGATGGCCACCGCCGGTAAACTCGTGTCGTCGTCGTCGTCGTCACCCAAGCCTTTCGATTTCTCCGACGATTCAGTTCCTAAGAGAGTCGTTCTGTCGAGTGATCAGCAGCGTTATTGCTTGGAAGTACTCAAAGTCTTCAAGGACAAGAGGTTTTCTGCTCCCGAAAAAATCCGCCAAGAGTTCATGACGTTGCAGGTCCGTTTGCATTATACTCTCTTTCTTTCTCAATTTTATTGTTATTTAATGTTGTGCTTTTTCATAAAAGAGGAGGGTATTTATTCAATTGGTCAATTTTTTTGAAGAATATTTTCTCAAGTTACTCGAAGAATGATGAAAATAACTTCCAAAACAGGTTCTACAAGTGATGTGTACCTCTGTCTTTGAAGAAACAGAGGAGGGGGGCCAGTTTAGGAGTCTCATTTTTTTGATTCATTCATTCATAAGAGTGTATGATAAGAAAAAGTCCTCCAACACACCTCATCTTTACCTCCGTTATTTGTCTATATTATATACAAATGCTTTTAGTATAGTATATTTTGCTAAGTACTATACACGAGAAAATAAGTTACAAATCCACTTATTTCCTGGAAAACTATTTCCTTCATACAGAATACACCCGAAATGTTGAATTTGGGATATATGAGATGGATCCAAACAGAGTGAGATGGATATAAAGTATTCTTAGTCCATGTTCAACTAGTTAGGGAATATGGTGGAGTTGATTGACGTGTGATGATTATTTGATTTTTAGTTGGATATTCACAGTCATATTATCATATATCAATTAGAAAAACCAAGTCTTTCTATGCTAAGAATGAGTTGCTGTCGTCATTGGACTTTTCAACGTTTCTTCTTCACATAGGTGGTTCCATTCTTGGAAAATTGTGGTAGTTTGAATGCTTCAAACAGCAAATTCATTGGAACGTATTAAATGGTTCATATTAATCGATATGTATATAGAGGATTTATGCTATGGACTCCAGGTAATTTAGAATTAAGATTTAGTTGATAAATTGACTGATTGAAGTGTTGGTAAATTGTTTGAGTTCTAGTTGGATTTTTACTGTCATACTATTTTGAAAAGGGAAATCACTTACTCCTTGTAGGATGACTGTCAACCTTAACTAGGTGATAACATCATGAAGGCTTTAGGCATTTAATTCATTACGTCATATGAAATAGGCTGAAGTTAGTTGATCTTGAGCCGACTACTAGTAGTTAGGGATCGAGAAGTAGTTAACCGGTTGATTGATTGATTCAAAGTTTTGGGTGATATTGATGACGTCAATTTATTCGATTCAAACACAATACACATAACATTTTTCCAAAGTGGGAATATAACTAAGTTAAAGACTTAGCGCTTCTAATATTCTGACATATGCTATTTTGAAACATCTCCTACTGTGTTCAATCATAATTTTAAGCTCTCAGCATTAGCATGTGTTGTAGTATGTTTTACAGGATTCTACAATCTATACCATATCGCTAGCCTTTCCTCTCTGAATTTGTACATCTTTTCACTACAATTAGTGTCTCCTTGAGATATAGCATCTTTTTTTTTTTCGATTGGTAAAAGTAATTTGATTCAACAAAATGCTCTTTCTGGTATAGAATTTTTGCAGCATTCTTCCCCTCATTTCACTTATCCTATGCTAATATGATAATCCAAAACTTGTTGCTTCTCATTTAACATTCTTTATGTTTTCTTGTAGGTAATCATGCTTAGAAGATTAGAGTTAGAATTTGTTTCCACGTGAAAAAAGGACTAGTTCTTTTTCCTTTCAAAGAGTAATTATTTATTGATCCCGCTTAGGGATTACACTGGGTATGTTGTTGTATGTGAAAGCTCATACTAGGGTATAGGAGAAGTAAAGAAGTTCTGCAAAAATACAGTTCTCTATGAACAACATCTAGTTAGTATAACTCTGTACTACCAGAGGTTTTATGTTCTCTCTTAAATTTACTAGAAACAACATATTTGCCTTAATTTGCATGAGAATACCTTTTTATCGGTAATTTGTATAACAGTATTATTCTCCCCTCGGAAACTCCATTCCTTTCTCTCCTATTACCCACATTTGGACAGACCAGGTTACATTCCTGCTCTCTATCTCCGTTTCCTTCTTTCTTCTAAAGCTCCAACTGAACATGAGATCTTTCCTTGTATATGCTATTGCCTACTGAACGCCAAAGGGATTCAATACTACGCACTTTAATCAACTTTCTAATGGGCAATGCGTGAGCAAGTGATCCACATCTGCGCAGGATTGTTTACACATATAGCACCAGCTATTTTGTCCTAACTTCCGTTTGCTCAAGTTCTCTGCAGTAAGGATGACTACCCTTGCTGTTGCTGGAAAACATACCTTCATCAGAGCTCTAGGAATCCAGATTGAGATCTGTGGGAGAATTATGTGTTTTCTTTTTAGTAGTCTGTCGTAGGACTACTTAAGTCCAAAATTCCTCATGCTTGCCCATTCCATAACTAAGAATTCTGACCTGTTGGTGTGATGTTTTGCTTTTAAATAGGTTGTGGAACTCACCTATCTCCCACAGCTGTAATGATCAAGTTGCTTAGTTTTGTTGTTACATTTCAGAGAGTAATATTGTTACTTTTTTGAGATCCGGAATGTATTAGGAAGACCTTGCTCAAAGTATCAACTCCGAAAAGCAAAAATGGAGGCATATTGGGAGTTAGGTGGTCTTAACTCTTAAGTGTCTATATGAAGCAAAATAACACCTTTAGATAGTTTTAAGAAAATATTGAGAAGCTTCTTTGATGGTTGAGTTCATTTATGTAATGTTTCCCGCTCTCATTTAAATCTAGTTTCCAAAAAAAAAAATCAAAATCCAAGCATCTTTTTTATGATGTTTTGGGTAGATGCTGGTGGTGGTGACTCCACTTAAAATGAGCTAAATTTATGTGAAAGGACAGCTCTCTTATGTCTTGAGAAAGTTGTTGTTGCATGATGTTGTTTGTTTTGCTTCTTTGTTATTTACTTGTTGAGATCTTGGCTTTCTGTAAGTAGCATGATGTTATCCTGAATTCCAAGAACACCTCTTATGACTCAGGCAACTAGGATGAGAGCTTCAGAAATGAAAAGTAGATGCTCAATGGCTTTGAACAGCGCAAACATTAGCAAAAATCGATACACTGATGTTCTGCCATGTATGCAGATCAGTTTCTATCAATTCTTCGATTGATGTTGAAGTTGTGTATTATAACCTGTGAATAATTATATCAAGCTTCATTCTTCTCAGTTGACAATAACAGGGTTGTTTTGGACCCACCAGCTAGAGGATATATAAATGCAAGCTTCATTAAGGTAGACTTCTACGTCCATTACTTGAAATTAGTTAAGCATGCTACTTGCTTTTGATACTCTCTTGGAAAATGTCAAGCTCTCTTCCACCAATCTGCTTCATGAGCATTATAATGCTCCTTTTTGCTGTAGATATCTGAAGACGTGTCTCAGTTTATTGCAACACAAGGTCCTCTACAACACACTTTTGAAGACTTCTGGGAAATGATAATCCAGCATCGCTGTCCTGTGATTGTGATGCTTACACAATTGTTTGACAACTACAAGGTATTCAACTGTTAAATTACGAGGTAAGCATTGTAATGTTAACAAGACAAGATATCTTGTTCTGTCATGTCACATGTGACAGAAAGAAAAAAATTGAGATTTTTTGTGACAAGGCTTCTGATCCAAAATTTGCTACCTAGGTAAAATTCTAACTTTTCTGCCTTTTTCATCTCTTGATTTTCATCCTCTGTTGTAATTAGATCTAGCATTTTTATACTTTCAGAAAGGTGCAACTGAACCTTTGATACTGTTTTTGCATTTTTTCTTGAGATACTTTGCCCCTTTACTATGTACTCTTCTATATTTTGAGTGGTGAGATAGGTTGGGGAAAAGAAACAGTAGAGAAAAAAAATATCTTAACCATCTCTTCTTGCTTGTCAATCTTTATTTCACACCTCTGTGTATAATTTCTTACACAGAAAGGAACAAACAGGTCGGTATTTTCAATATATATGCTACTACATCTTCTCGAAAAATAGAAAAAAGAAAAGTTTGGTGGTAAATGAATGCTCATTTTCTATCAGCATTCTTTTACATTAGGGGTGTCAAATGGGCGGGTTGGGTTGAAATTGGAAATATTACAATGGGCTGAATAGAAATCGGGTTGGGTCTTGACCCGCCCAAGTTTACGTTGGGCTCATATGGGTTGGGCTCAAATGGGTTGGGTCTTGACCCGCCCAATTTGACCCGATAAATCTCAATAATTTAACATATTATTATTTAACTTTTATAATCACAATTTGAATTTCTGCTCAAGATTTTTTTGTTAAAAAAGTAACAAATGGATAGATAATTCCTAAAAGATGTTGAATAGATAATAATTCATACCTTCAATACAGGAACATATCTTAATAAAAAAATTTAAACGGGTTGAAATTGGAGATTGAATTGGGCTCAATTGAGAATTCTCTTCAAATGGGTTAAGCTTGAATGGGTTGGGATTGAACCCATTTCAAATTATCTTGAGCCCAACCTTTAAAATTTTGTGCGGGTTGGCTGGGTTACCTATGTTTGATTTCATTTTTGACACCTATTTTACATCATCCTTTCTGGCCCTAATTCAAGCCGGAGGTTGTGGCTTTAAGGTCTGTTTAAATTTGATATAGTCATCACTGTCAATCTTTCTGCTAGTCATCACTCATCACTGGCAATCTTTCTGAGTAGGGAATGTTTCTCCTATAGACTATTTCAGAGCTTGGGCATATTTTGATGGAGTTGGTATAAGTAGACTTCTAGTGTGGTGCTTAAAGATATTATATGATCACTAGCTTGTGACTTCGTGATGAATATAAAGCTTGTAGGTGAATAACTTTTGCAGAAAATCAGCTTCTGTTGGGGAAGGTTCCAATTGAAGTTTATATTCCATCACGGGAAAAAGCCCTAGTTTTCCCTTCATATAAGCTTGGTAGATCATTTATCTATTTTTGTGGTCTTTCTCTAGTTTCAAAACTGTTATACTTGGATTTTGTTGGTTATTTAAACTGCAGAAGGATTAGCAAAGTCTAATGCAAAGGCCTGGCGGCTATTCTAGGATTGGAATTTGAGCTTAATAAGTTCTTCTTTCCCTTCTATCTTCCTAATACCCGATTAGCTGAGAAACAATTTCCTGGGCCAAATGGAAAAAAGGAAAATAAGAGACCTTGTTTCATGACCTTTATTCTGGATTATATTCAACTCTTCACACAAAGAGAGAGGCTACTAGTTTCCTTTCAATCACCCTGTATCACCTATTAACCTCTGAATGAATTTAAGCATTTATCTTAGTTGGTTTTTACTTCATTTGTAAGTGATTAAGCTGGTGATTGCGTCATTTTGACTATTTCATCTTTTCATCTTTATGAAAAATGCAATGCAGATTGTCAAGTGTGGGGATTATTTTCAGGCAGATGGTGGTCCCAGAAGATTTGGCAATATATGTATTGTTACGAAGTGGATAAAGACGACTCAGACTTCATTGATTTTGCGATGTCTGGAGGTGAACTATATTGAGGTTAGTAAATTTTTTTCTGTCCGTGTTATACACAAGGAGAAGAGCATGAAGAATCTTATTATGTTGGACATGTATATGGAACCGCTGGAAACTATTTACCTGTTTCATTTGATGGAGAGTGAGAGTTGCTGATGTACATATTTTGATTTCTGCAGCATTTTACATATCCAGACTGATACACTTCTTCTCCAGTAAATATGAGTCCTTGGCTTTAGAATACCCTTCTTTAAAGCTCTATGATCACGCATTGCTCTTTTTGCATAAGTTCTCCCAAAATTTGGGTTTTTTTTTATGAGAGCAAGAATAAAAAGGAATTGCAACATATGGGGAAAATTTTGCAATACTATATGATGATTTCCATCAGTATTGCCTTCAACAATCAATTGGATAGTATGGTGTCATTTTTGCTCGTTGTCTCTTCTTGTATATAATCGATGCAATTCCATCTCTAGCTTCAATTAGTGGTTTTAAACCAAACAGGAAGACTGATTGACTTGTAAACCATCCAGATATGGCTTTGGAAACCTGCCTTTTGTCTATTTCAAGGCCTTGTCTTAGTTGCAGCAAGACTTTTTAAGTAACACAGATAATGATTATGAATGCTAATTAAGTGGAAAAGATTCTTTGGTGGTTCCTCACCCCTCCTTCACTATTTTCAAAGTCCCATTTTGAAGCACTTTATTCTACTGTGGAATCGTTTCTGCCTGCATTCTTGTTCCTTCTTTTACAATCTTTGATGCTTGGATAGACTGTTTAAGATACATGACAACACCTTTTTCCCTCTTCCTTACATGAGGACAACTTGAATGCTAGTTCTATTTGTTTTATCTTGTGTTTAAATTACTTTTATAGCTGTGTACACACCATCCTCGCCAGATCTCACTTGTGGGATTACACTGGGTATGTTGTTATAGCAGATCTAGTTTTTCTCTTGCCATGTGTAGTAGGTGGCAATAGACGACTTGTTTGCGTGAGAAGGCTCACAATTGGTACTACAGTCATTGCGGCAATCCCTTAGCGATCTCTTTCAAGTAATTCTGGCATTTTTATTGTTGGGAGTAAAGAAAAACTTCAGTCTTTCACTTTGCAGTATAAATGCTTTATTTCGTATTATGATATCAGAAATGTGGTTTCTTTAACCTTGTACTTTTAGTGGAATTACCTTTTGGCAATCTTGTAAGTAGTTCATACAATGGTATGTAATTGTGGCCCAATTCTCCCACTCACTTGTCATCCTTACATATAGTTAACACTAATTTCTTGCCCATATTATGAGGGAAATGGCAATAAATGTGTGATCTTTTCTCCTTGCTATTTGCCAGTCAACAGAACCACCTTTGTGTGTTTTACACATTCAATATCCCGACTGGCCTGACCATGGAGTTCCAAAGGACACTCTTGCTGTTCGTGAAATACTGAAACAAACATTTAGTGTCCCACCCAGTCTTGGACCAATTGTGGTGCACTGCAGGTTTCTGTCTATCATATTCCCTGTAGATGTGCCTTTTTTAATGATTCTGTAATTTATCCTTTCTAAAGCCTGACATCACATTCTCTTACACAGTGCAGGTATTGGTAGGACTGGAACATACTGTGCAATCCATAATACCATCCAAAGAATATTGGGTGGAGATAAGTCTGCTCTAGATCTAGTTAACACAATAACCATTTTTAGGTCTCAGCGAATTGGGATGGTTCAAACCATGGTACAACAGCTTCTCTTCGTTATTGAAATTGTGTAATACAACTAAAGCAGATAACTGTTGGAGTAGTCGAGGTTTGCAAAAGCTGGCCCGGACACTACTGTCATAAAAATTTTTATATATAGTTGCCCCAGTGTCCTTATTTTTTGTTTAAAAGCTAGTCAGATGTCTTACATTTTATTCGCTTTACTCTCTTTTTCTCTTTTGGTATTTGTTACACTTACCCCAAGAATCTATACTACTGTGTTTCATCATTCTTAACTAATCTTTGCTCTTAGGTTCTTAAGTACTTGTTGCATGGAATGTCTGTACTAAACTACTATTTTATATTACAGGAGCAATACCTCTTTTGCTATGATGCCGTTATCGATGAGCTTGAAGACCTCATTTCAGATAGCCAATGAAGAAGAGAGTTCATAATGGTAATTTTCAATTTTTCAGTGTCAGCCTCATTTTTTCGTAATTTAGTTCTAACCATTTCATGTGTTGTATTCCAGCAACTGGTTCTTCCTTGCTGCAATCATGCTTCTGTACTTGCTTACAAATGAGAAGAAATAGAACAATAATTTGTTCTGAAGAAGCAAATCAGTTGGGTCCACTTGAGTTTCTTACTGTTCTTACCATGTAGGAATAAGCATAAAACGTGCAAAATATCGTATGTTGTATTTCTGTTTGGAAGTATACATGCTTTTAGAGAGGGAAAAAGAACTTATTTAACACACTCTTAATCGTACCCTGCTTATTGTTGATTACATGTATGGTAAGTTGATGATGTTCAAGGTAGCTTTTACACCAACTTCCTTGCAATGGTTTATGTAAAGACCTTATATAAAATAGAGCTTTGTCGTGCTTTGGTGCTTGATGTGACTGGGGAGGGGGGAGGCTTCAAATAAAGTGCGTAAAATGAACCTATCCTTCTCGGGGGGAGGCTTCAAATAAAGTGCGTAAAATGAACCTATCCTTCTCAGACTTCATTTGCGGAACTTTTTTATAATGATATGGTATTCTTTGGTGTAATTAGTTGTGAACAAAAACAACCCATTAATA</genome_strand>
        <mrna_strand>GGTACAAAGAAAGCAGTGAAGTGAACATCCTACCACGGGGTGCGGACTGTCCATTCGGAATCGGAGGCAGATATCAGCGATGGCCACCGCCGGTAAACTCGTGTCGTCGTCGTCGTCGTCACCCAAGCCTTTCGATTTCTCCGACGATTCAGTTCCTAAGAGAGTCGTTCTGTCGAGTGATCAGCAGCGTTATTGCTTGGAAGTACTCAAAGTCTTCAAGGACAAGAGGTTTTCTGCTCCCGAAAAAATCCGCCAAGAGTTCATGACGTTGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTAGGATGAGAGCTTCAGAAATGAAAAGTAGATGCTCAATGGCTTTGAACAGCGCAAACATTAGCAAAAATCGATACACTGATGTTCTGCCAT............................................................................................TTGACAATAACAGGGTTGTTTTGGACCCACCAGCTAGAGGATATATAAATGCAAGCTTCATTAAG.................................................................................................................................ATATCTGAAGACGTGTCTCAGTTTATTGCAACACAAGGTCCTCTACAACACACTTTTGAAGACTTCTGGGAAATGATAATCCAGCATCGCTGTCCTGTGATTGTGATGCTTACACAATTGTTTGACAACTACAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTCAAGTGTGGGGATTATTTTCAGGCAGATGGTGGTCCCAGAAGATTTGGCAATATATGTATTGTTACGAAGTGGATAAAGACGACTCAGACTTCATTGATTTTGCGATGTCTGGAGGTGAACTATATTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACAGAACCACCTTTGTGTGTTTTACACATTCAATATCCCGACTGGCCTGACCATGGAGTTCCAAAGGACACTCTTGCTGTTCGTGAAATACTGAAACAAACATTTAGTGTCCCACCCAGTCTTGGACCAATTGTGGTGCACTGCAG.............................................................................................TGCAGGTATTGGTAGGACTGGAACATACTGTGCAATCCATAATACCATCCAAAGAATATTGGGTGGAGATAAGTCTGCTCTAGATCTAGTTAACACAATAACCATTTTTAGGTCTCAGCGAATTGGGATGGTTCAAACCATG............................................................................................................................................................................................................................................................................................................................................GAGCAATACCTCTTTTGCTATGATGCCGTTATCGATGAGCTTGAAGACCTCATTTCAGATAGCCAATGAAGAAGAGAGTTCATAATG...........................................................................CAACTGGTTCTTCCTTGCTGCAATCATGCTTCTGTACTTGCTTACAAATGAGAAGAAATAGAACAATAATTTGTTCTGAAGAAGCAAATCAGTTGGGTCCACTTGAGTTTCTTACTGTTCTTACCATGTAGGAATAAGCATAAAACGTGCAAAATATCGTATGTTGTATTTCTGTTTGGAAGTATACATGCTTTTAGAGAGGGAAAAAGAACTTATTTAACACACTCTTAATCGTACCCTGCTTATTGTTGATTACATGTATGGTAAGTTGATGATGTTCAAGGTAGC............................................................................................................................................................................................................................................TTTTAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E216865" ref_strand="+" ref_description="SGN-E216865 [cLEL-1-O19](-)">
      <seq>tcttttgctatgatgccgttatcgatgagcttgaagacctcatttcagatagccaatgaagaagagagttcataatgcaactggttcttccttgctgcaatcatgcttctgtacttgcttacaaatgagaagaaatagaccaataatttgttctgaagaagcaaatcagttgggtccacttgagtttcttactgttcttaccatgtaggaataagcataaaacgtgcaaaatatcgtatgttgtatttctgtttggaagtatacatgcttttagagagggaaaaagaacttatttaacacactcttaatcgtaccctgcttattgttgattacatgtatgccaagttgatgatgttcaaggtagcttttacaccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="82349" stop="7755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82049" g_stop="81973" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81972" i_stop="81898" i_length="75">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.843" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81897" g_stop="81599" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="376" r_length="299" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81598" i_stop="81374" i_length="225">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.545" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81373" g_stop="81358" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="392" r_length="16" r_score="0.562"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E216865" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82049" e_stop="81973"/>
          <exon e_start="81897" e_stop="81599"/>
          <exon e_start="81373" e_stop="81358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTGCTATGATGCCGTTATCGATGAGCTTGAAGACCTCATTTCAGATAGCCAATGAAGAAGAGAGTTCATAATGGTAATTTTCAATTTTTCAGTGTCAGCCTCATTTTTTCGTAATTTAGTTCTAACCATTTCATGTGTTGTATTCCAGCAACTGGTTCTTCCTTGCTGCAATCATGCTTCTGTACTTGCTTACAAATGAGAAGAAATAGAACAATAATTTGTTCTGAAGAAGCAAATCAGTTGGGTCCACTTGAGTTTCTTACTGTTCTTACCATGTAGGAATAAGCATAAAACGTGCAAAATATCGTATGTTGTATTTCTGTTTGGAAGTATACATGCTTTTAGAGAGGGAAAAAGAACTTATTTAACACACTCTTAATCGTACCCTGCTTATTGTTGATTACATGTATGGTAAGTTGATGATGTTCAAGGTAGCTTTTACACCAACTTCCTTGCAATGGTTTATGTAAAGACCTTATATAAAATAGAGCTTTGTCGTGCTTTGGTGCTTGATGTGACTGGGGAGGGGGGAGGCTTCAAATAAAGTGCGTAAAATGAACCTATCCTTCTCGGGGGGAGGCTTCAAATAAAGTGCGTAAAATGAACCTATCCTTCTCAGACTTCATTTGCGGAACTTTTTTATAATGATATGGTATTCTTTGGTGTAATTAGTTGTGAACAAAAACAA</genome_strand>
        <mrna_strand>TCTTTTGCTATGATGCCGTTATCGATGAGCTTGAAGACCTCATTTCAGATAGCCAATGAAGAAGAGAGTTCATAATG...........................................................................CAACTGGTTCTTCCTTGCTGCAATCATGCTTCTGTACTTGCTTACAAATGAGAAGAAATAGACCAATAATTTGTTCTGAAGAAGCAAATCAGTTGGGTCCACTTGAGTTTCTTACTGTTCTTACCATGTAGGAATAAGCATAAAACGTGCAAAATATCGTATGTTGTATTTCTGTTTGGAAGTATACATGCTTTTAGAGAGGGAAAAAGAACTTATTTAACACACTCTTAATCGTACCCTGCTTATTGTTGATTACATGTATGCCAAGTTGATGATGTTCAAGGTAGCTTTTACACCAA.................................................................................................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E216430" ref_strand="+" ref_description="SGN-E216430 [cLEL-1-E2](-)">
      <seq>atttttaggtctcagcgaattgggatggttcaaaccatggagcaatacctcttttgctatgatgccgttatcgatgagcttgaagacctcatttcagatagccaatgaagaagagagttcataatgcaactggttcttccttgctgcaatcatgcttctgtacttgcttacaaatgagaagaaatagaccaataatttgttctgaagaagcaaatcagttgggtccacttgagtttcttactgttcttaccatgtaggaataagcataaaacgtgcaaaatatcgtatgttgtatttctgtttggaagtatacatgcttttagagagggaaaaagaacttatttaacacactcttaatcgtaccctgcttattgttgattacatgccccctaagttgatgatgttcaaggtagcttttacaccaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="82730" stop="7755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82430" g_stop="82392" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82391" i_stop="82060" i_length="332">
            <donor d_prob="0.915" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82059" g_stop="81973" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="126" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81972" i_stop="81898" i_length="75">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.843" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81897" g_stop="81585" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="439" r_length="313" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E216430" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82430" e_stop="82392"/>
          <exon e_start="82059" e_stop="81973"/>
          <exon e_start="81897" e_stop="81585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTAGGTCTCAGCGAATTGGGATGGTTCAAACCATGGTACAACAGCTTCTCTTCGTTATTGAAATTGTGTAATACAACTAAAGCAGATAACTGTTGGAGTAGTCGAGGTTTGCAAAAGCTGGCCCGGACACTACTGTCATAAAAATTTTTATATATAGTTGCCCCAGTGTCCTTATTTTTTGTTTAAAAGCTAGTCAGATGTCTTACATTTTATTCGCTTTACTCTCTTTTTCTCTTTTGGTATTTGTTACACTTACCCCAAGAATCTATACTACTGTGTTTCATCATTCTTAACTAATCTTTGCTCTTAGGTTCTTAAGTACTTGTTGCATGGAATGTCTGTACTAAACTACTATTTTATATTACAGGAGCAATACCTCTTTTGCTATGATGCCGTTATCGATGAGCTTGAAGACCTCATTTCAGATAGCCAATGAAGAAGAGAGTTCATAATGGTAATTTTCAATTTTTCAGTGTCAGCCTCATTTTTTCGTAATTTAGTTCTAACCATTTCATGTGTTGTATTCCAGCAACTGGTTCTTCCTTGCTGCAATCATGCTTCTGTACTTGCTTACAAATGAGAAGAAATAGAACAATAATTTGTTCTGAAGAAGCAAATCAGTTGGGTCCACTTGAGTTTCTTACTGTTCTTACCATGTAGGAATAAGCATAAAACGTGCAAAATATCGTATGTTGTATTTCTGTTTGGAAGTATACATGCTTTTAGAGAGGGAAAAAGAACTTATTTAACACACTCTTAATCGTACCCTGCTTATTGTTGATTACATGTATGGTAAGTTGATGATGTTCAAGGTAGCTTTTACACCAACTTCCTTGCAATGG</genome_strand>
        <mrna_strand>ATTTTTAGGTCTCAGCGAATTGGGATGGTTCAAACCATG............................................................................................................................................................................................................................................................................................................................................GAGCAATACCTCTTTTGCTATGATGCCGTTATCGATGAGCTTGAAGACCTCATTTCAGATAGCCAATGAAGAAGAGAGTTCATAATG...........................................................................CAACTGGTTCTTCCTTGCTGCAATCATGCTTCTGTACTTGCTTACAAATGAGAAGAAATAGACCAATAATTTGTTCTGAAGAAGCAAATCAGTTGGGTCCACTTGAGTTTCTTACTGTTCTTACCATGTAGGAATAAGCATAAAACGTGCAAAATATCGTATGTTGTATTTCTGTTTGGAAGTATACATGCTTTTAGAGAGGGAAAAAGAACTTATTTAACACACTCTTAATCGTACCCTGCTTATTGTTGATTACATGCCCCCTAAGTTGATGATGTTCAAGGTAGCTTTTACACCAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E538299" ref_strand="+" ref_description="SGN-E538299 [TUS-57-G10](-)">
      <seq>cgaagtggataaagacgactcagacttcattgattttgcgatgtctggaggtgaactatattgagtcaacagaaccacctttgtgtgttttacacattcaatatcccgactggcctgaccatggagttccaaaggacactcttgctgttcgtgaaatactgaaacaaacatttagtgtcccacccagtcttggaccaattgtggtgcactgcagtgcaggtattggtaggactggaacatactgtgcaatccataataccatccaaagaatattgggtggagataagtctgctctagatctagttaacacaataaccatttttaggtctcagcgaattgggatggttcaaaccatggagcaatacctcttttgctatgatgccgttatcgatgagcttgaagacctcatttcagatagccaatgaagaagagagttcataatgcaactggttcttccttgctgcaatcatgcttctgtacttgcttacaaatgagaagaaatagaacaataatttgttctgaagaagcaaatcagttgggtccacttgagtttcttactgttcttaccatgtaggaataagcataaaacgtgcaaaatatcgtatgttgtatttctgtttggaagtatacatgcttttagagagggaaaaagaacttatttaacacactcttaatcgtaccctgcttattgttgattaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84462" stop="81341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84162" g_stop="84098" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84097" i_stop="82776" i_length="1322">
            <donor d_prob="0.857" d_score="1.00"/>
            <acceptor a_prob="0.116" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82775" g_stop="82627" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="214" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82626" i_stop="82534" i_length="93">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82533" g_stop="82392" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="356" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82391" i_stop="82060" i_length="332">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82059" g_stop="81973" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="443" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81972" i_stop="81898" i_length="75">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.843" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81897" g_stop="81642" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="699" r_length="256" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="700" polyA_stop="712"/>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E538299" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84162" e_stop="84098"/>
          <exon e_start="82775" e_stop="82627"/>
          <exon e_start="82533" e_stop="82392"/>
          <exon e_start="82059" e_stop="81973"/>
          <exon e_start="81897" e_stop="81642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGTGGATAAAGACGACTCAGACTTCATTGATTTTGCGATGTCTGGAGGTGAACTATATTGAGGTTAGTAAATTTTTTTCTGTCCGTGTTATACACAAGGAGAAGAGCATGAAGAATCTTATTATGTTGGACATGTATATGGAACCGCTGGAAACTATTTACCTGTTTCATTTGATGGAGAGTGAGAGTTGCTGATGTACATATTTTGATTTCTGCAGCATTTTACATATCCAGACTGATACACTTCTTCTCCAGTAAATATGAGTCCTTGGCTTTAGAATACCCTTCTTTAAAGCTCTATGATCACGCATTGCTCTTTTTGCATAAGTTCTCCCAAAATTTGGGTTTTTTTTTATGAGAGCAAGAATAAAAAGGAATTGCAACATATGGGGAAAATTTTGCAATACTATATGATGATTTCCATCAGTATTGCCTTCAACAATCAATTGGATAGTATGGTGTCATTTTTGCTCGTTGTCTCTTCTTGTATATAATCGATGCAATTCCATCTCTAGCTTCAATTAGTGGTTTTAAACCAAACAGGAAGACTGATTGACTTGTAAACCATCCAGATATGGCTTTGGAAACCTGCCTTTTGTCTATTTCAAGGCCTTGTCTTAGTTGCAGCAAGACTTTTTAAGTAACACAGATAATGATTATGAATGCTAATTAAGTGGAAAAGATTCTTTGGTGGTTCCTCACCCCTCCTTCACTATTTTCAAAGTCCCATTTTGAAGCACTTTATTCTACTGTGGAATCGTTTCTGCCTGCATTCTTGTTCCTTCTTTTACAATCTTTGATGCTTGGATAGACTGTTTAAGATACATGACAACACCTTTTTCCCTCTTCCTTACATGAGGACAACTTGAATGCTAGTTCTATTTGTTTTATCTTGTGTTTAAATTACTTTTATAGCTGTGTACACACCATCCTCGCCAGATCTCACTTGTGGGATTACACTGGGTATGTTGTTATAGCAGATCTAGTTTTTCTCTTGCCATGTGTAGTAGGTGGCAATAGACGACTTGTTTGCGTGAGAAGGCTCACAATTGGTACTACAGTCATTGCGGCAATCCCTTAGCGATCTCTTTCAAGTAATTCTGGCATTTTTATTGTTGGGAGTAAAGAAAAACTTCAGTCTTTCACTTTGCAGTATAAATGCTTTATTTCGTATTATGATATCAGAAATGTGGTTTCTTTAACCTTGTACTTTTAGTGGAATTACCTTTTGGCAATCTTGTAAGTAGTTCATACAATGGTATGTAATTGTGGCCCAATTCTCCCACTCACTTGTCATCCTTACATATAGTTAACACTAATTTCTTGCCCATATTATGAGGGAAATGGCAATAAATGTGTGATCTTTTCTCCTTGCTATTTGCCAGTCAACAGAACCACCTTTGTGTGTTTTACACATTCAATATCCCGACTGGCCTGACCATGGAGTTCCAAAGGACACTCTTGCTGTTCGTGAAATACTGAAACAAACATTTAGTGTCCCACCCAGTCTTGGACCAATTGTGGTGCACTGCAGGTTTCTGTCTATCATATTCCCTGTAGATGTGCCTTTTTTAATGATTCTGTAATTTATCCTTTCTAAAGCCTGACATCACATTCTCTTACACAGTGCAGGTATTGGTAGGACTGGAACATACTGTGCAATCCATAATACCATCCAAAGAATATTGGGTGGAGATAAGTCTGCTCTAGATCTAGTTAACACAATAACCATTTTTAGGTCTCAGCGAATTGGGATGGTTCAAACCATGGTACAACAGCTTCTCTTCGTTATTGAAATTGTGTAATACAACTAAAGCAGATAACTGTTGGAGTAGTCGAGGTTTGCAAAAGCTGGCCCGGACACTACTGTCATAAAAATTTTTATATATAGTTGCCCCAGTGTCCTTATTTTTTGTTTAAAAGCTAGTCAGATGTCTTACATTTTATTCGCTTTACTCTCTTTTTCTCTTTTGGTATTTGTTACACTTACCCCAAGAATCTATACTACTGTGTTTCATCATTCTTAACTAATCTTTGCTCTTAGGTTCTTAAGTACTTGTTGCATGGAATGTCTGTACTAAACTACTATTTTATATTACAGGAGCAATACCTCTTTTGCTATGATGCCGTTATCGATGAGCTTGAAGACCTCATTTCAGATAGCCAATGAAGAAGAGAGTTCATAATGGTAATTTTCAATTTTTCAGTGTCAGCCTCATTTTTTCGTAATTTAGTTCTAACCATTTCATGTGTTGTATTCCAGCAACTGGTTCTTCCTTGCTGCAATCATGCTTCTGTACTTGCTTACAAATGAGAAGAAATAGAACAATAATTTGTTCTGAAGAAGCAAATCAGTTGGGTCCACTTGAGTTTCTTACTGTTCTTACCATGTAGGAATAAGCATAAAACGTGCAAAATATCGTATGTTGTATTTCTGTTTGGAAGTATACATGCTTTTAGAGAGGGAAAAAGAACTTATTTAACACACTCTTAATCGTACCCTGCTTATTGTTGATTAC</genome_strand>
        <mrna_strand>CGAAGTGGATAAAGACGACTCAGACTTCATTGATTTTGCGATGTCTGGAGGTGAACTATATTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACAGAACCACCTTTGTGTGTTTTACACATTCAATATCCCGACTGGCCTGACCATGGAGTTCCAAAGGACACTCTTGCTGTTCGTGAAATACTGAAACAAACATTTAGTGTCCCACCCAGTCTTGGACCAATTGTGGTGCACTGCAG.............................................................................................TGCAGGTATTGGTAGGACTGGAACATACTGTGCAATCCATAATACCATCCAAAGAATATTGGGTGGAGATAAGTCTGCTCTAGATCTAGTTAACACAATAACCATTTTTAGGTCTCAGCGAATTGGGATGGTTCAAACCATG............................................................................................................................................................................................................................................................................................................................................GAGCAATACCTCTTTTGCTATGATGCCGTTATCGATGAGCTTGAAGACCTCATTTCAGATAGCCAATGAAGAAGAGAGTTCATAATG...........................................................................CAACTGGTTCTTCCTTGCTGCAATCATGCTTCTGTACTTGCTTACAAATGAGAAGAAATAGAACAATAATTTGTTCTGAAGAAGCAAATCAGTTGGGTCCACTTGAGTTTCTTACTGTTCTTACCATGTAGGAATAAGCATAAAACGTGCAAAATATCGTATGTTGTATTTCTGTTTGGAAGTATACATGCTTTTAGAGAGGGAAAAAGAACTTATTTAACACACTCTTAATCGTACCCTGCTTATTGTTGATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E620377" ref_strand="+" ref_description="SGN-E620377 [71077]">
      <seq>tacgactcagacttaattgattttgcaatgtctggaggtgaactatattgagtcaaaagaaccacctttgtgtgttttacacattcaatatcccgactggcctgaccatggagttccaaaggacactcttgctgttcgtgaaatactgaaacaaacatttagtgtcccacccagtcttggaccaattgtggtgcactgcagtgcaggtattggtaggactggaacatactgtgcaatccataataccatccaaagaatattggttggagataagtctgctctagatctcgttaacacagtaaccatttttaggtctcagcgaattgggatggttcagaccatggagcaatacctcttttgctatgatgccattatcgatgaacttgaagacctcatttcagatagccaataaagaagagagttcataatgcaaggtccatgcaactggtttttccttgctgcaatcatgcctatacttgcttacaaatgacgaagaaatggaacaataatttgtgctgaaagaaggcaaatcaggttggggtccactttgagttttcttactggctctttaccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84448" stop="81481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84149" g_stop="84098" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84097" i_stop="82776" i_length="1322">
            <donor d_prob="0.857" d_score="0.96"/>
            <acceptor a_prob="0.116" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82775" g_stop="82627" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="201" r_length="149" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82626" i_stop="82534" i_length="93">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82533" g_stop="82392" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="343" r_length="142" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82391" i_stop="82060" i_length="332">
            <donor d_prob="0.915" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82059" g_stop="81973" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="430" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81972" i_stop="81908" i_length="65">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.78"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81907" g_stop="81818" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="520" r_length="90" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E620377" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E620377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84149" e_stop="84098"/>
          <exon e_start="82775" e_stop="82627"/>
          <exon e_start="82533" e_stop="82392"/>
          <exon e_start="82059" e_stop="81973"/>
          <exon e_start="81907" e_stop="81818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGACTCAGACTTCATTGATTTTGCGATGTCTGGAGGTGAACTATATTGAGGTTAGTAAATTTTTTTCTGTCCGTGTTATACACAAGGAGAAGAGCATGAAGAATCTTATTATGTTGGACATGTATATGGAACCGCTGGAAACTATTTACCTGTTTCATTTGATGGAGAGTGAGAGTTGCTGATGTACATATTTTGATTTCTGCAGCATTTTACATATCCAGACTGATACACTTCTTCTCCAGTAAATATGAGTCCTTGGCTTTAGAATACCCTTCTTTAAAGCTCTATGATCACGCATTGCTCTTTTTGCATAAGTTCTCCCAAAATTTGGGTTTTTTTTTATGAGAGCAAGAATAAAAAGGAATTGCAACATATGGGGAAAATTTTGCAATACTATATGATGATTTCCATCAGTATTGCCTTCAACAATCAATTGGATAGTATGGTGTCATTTTTGCTCGTTGTCTCTTCTTGTATATAATCGATGCAATTCCATCTCTAGCTTCAATTAGTGGTTTTAAACCAAACAGGAAGACTGATTGACTTGTAAACCATCCAGATATGGCTTTGGAAACCTGCCTTTTGTCTATTTCAAGGCCTTGTCTTAGTTGCAGCAAGACTTTTTAAGTAACACAGATAATGATTATGAATGCTAATTAAGTGGAAAAGATTCTTTGGTGGTTCCTCACCCCTCCTTCACTATTTTCAAAGTCCCATTTTGAAGCACTTTATTCTACTGTGGAATCGTTTCTGCCTGCATTCTTGTTCCTTCTTTTACAATCTTTGATGCTTGGATAGACTGTTTAAGATACATGACAACACCTTTTTCCCTCTTCCTTACATGAGGACAACTTGAATGCTAGTTCTATTTGTTTTATCTTGTGTTTAAATTACTTTTATAGCTGTGTACACACCATCCTCGCCAGATCTCACTTGTGGGATTACACTGGGTATGTTGTTATAGCAGATCTAGTTTTTCTCTTGCCATGTGTAGTAGGTGGCAATAGACGACTTGTTTGCGTGAGAAGGCTCACAATTGGTACTACAGTCATTGCGGCAATCCCTTAGCGATCTCTTTCAAGTAATTCTGGCATTTTTATTGTTGGGAGTAAAGAAAAACTTCAGTCTTTCACTTTGCAGTATAAATGCTTTATTTCGTATTATGATATCAGAAATGTGGTTTCTTTAACCTTGTACTTTTAGTGGAATTACCTTTTGGCAATCTTGTAAGTAGTTCATACAATGGTATGTAATTGTGGCCCAATTCTCCCACTCACTTGTCATCCTTACATATAGTTAACACTAATTTCTTGCCCATATTATGAGGGAAATGGCAATAAATGTGTGATCTTTTCTCCTTGCTATTTGCCAGTCAACAGAACCACCTTTGTGTGTTTTACACATTCAATATCCCGACTGGCCTGACCATGGAGTTCCAAAGGACACTCTTGCTGTTCGTGAAATACTGAAACAAACATTTAGTGTCCCACCCAGTCTTGGACCAATTGTGGTGCACTGCAGGTTTCTGTCTATCATATTCCCTGTAGATGTGCCTTTTTTAATGATTCTGTAATTTATCCTTTCTAAAGCCTGACATCACATTCTCTTACACAGTGCAGGTATTGGTAGGACTGGAACATACTGTGCAATCCATAATACCATCCAAAGAATATTGGGTGGAGATAAGTCTGCTCTAGATCTAGTTAACACAATAACCATTTTTAGGTCTCAGCGAATTGGGATGGTTCAAACCATGGTACAACAGCTTCTCTTCGTTATTGAAATTGTGTAATACAACTAAAGCAGATAACTGTTGGAGTAGTCGAGGTTTGCAAAAGCTGGCCCGGACACTACTGTCATAAAAATTTTTATATATAGTTGCCCCAGTGTCCTTATTTTTTGTTTAAAAGCTAGTCAGATGTCTTACATTTTATTCGCTTTACTCTCTTTTTCTCTTTTGGTATTTGTTACACTTACCCCAAGAATCTATACTACTGTGTTTCATCATTCTTAACTAATCTTTGCTCTTAGGTTCTTAAGTACTTGTTGCATGGAATGTCTGTACTAAACTACTATTTTATATTACAGGAGCAATACCTCTTTTGCTATGATGCCGTTATCGATGAGCTTGAAGACCTCATTTCAGATAGCCAATGAAGAAGAGAGTTCATAATGGTAATTTTCAATTTTTCAGTGTCAGCCTCATTTTTTCGTAATTTAGTTCTAACCATTTCATGTGTTGTATTCCA-GCAACTGGTTCTTCCTTGCTGCAATCATGCTTCTGTACTTGCTTACAAATGA-GAAGAAATAGAACAATAATTTGTTCTGAA</genome_strand>
        <mrna_strand>TACGACTCAGACTTAATTGATTTTGCAATGTCTGGAGGTGAACTATATTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAAAGAACCACCTTTGTGTGTTTTACACATTCAATATCCCGACTGGCCTGACCATGGAGTTCCAAAGGACACTCTTGCTGTTCGTGAAATACTGAAACAAACATTTAGTGTCCCACCCAGTCTTGGACCAATTGTGGTGCACTGCAG.............................................................................................TGCAGGTATTGGTAGGACTGGAACATACTGTGCAATCCATAATACCATCCAAAGAATATTGGTTGGAGATAAGTCTGCTCTAGATCTCGTTAACACAGTAACCATTTTTAGGTCTCAGCGAATTGGGATGGTTCAGACCATG............................................................................................................................................................................................................................................................................................................................................GAGCAATACCTCTTTTGCTATGATGCCATTATCGATGAACTTGAAGACCTCATTTCAGATAGCCAATAAAGAAGAGAGTTCATAATG.................................................................CAAGGTCCATGCAACTGGTTTTTCCTTGCTGCAATCATGC--CTATACTTGCTTACAAATGACGAAGAAATGGAACAATAATTTGTGCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E215134" ref_strand="+" ref_description="SGN-E215134 [cLEC-78-H4]">
      <seq>aaaaatccgccaagagttcatgacgttgcaggcaactaggatgagagcttcagaaatgaaaagtagatgctcaatggctttgaacagcgcaaacattagcaaaaatcgatacactgatgttctgccatttgacaataacagggttgttttggacccaccagctagaggatatataaatgcaagcttcattaagatatctgaagacgtgtctcagtttattgcaacacaaggtcctctacaacacacttttgaagacttctgggaaatgataatccagcatcgctgtcctgtgattgtgatgcttacacaattgtttgacaactacaagattgtcaagtgtggggattattttcaggcagatggtggtcccagaagatttggcaatatatgtattgttacgaagtggataaagacgactcagacttcattgattttgcgatgtctggaggtgaactatattgaggagcaatacctcttttgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="89813" stop="81740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89513" g_stop="89483" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89482" i_stop="86606" i_length="2877">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.637" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86605" g_stop="86509" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="128" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86508" i_stop="86417" i_length="92">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86416" g_stop="86352" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="193" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86351" i_stop="86223" i_length="129">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86222" g_stop="86088" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="328" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86087" i_stop="84233" i_length="1855">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84232" g_stop="84098" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="463" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84097" i_stop="82060" i_length="2038">
            <donor d_prob="0.857" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82059" g_stop="82040" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="483" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E215134" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89513" e_stop="89483"/>
          <exon e_start="86605" e_stop="86509"/>
          <exon e_start="86416" e_stop="86352"/>
          <exon e_start="86222" e_stop="86088"/>
          <exon e_start="84232" e_stop="84098"/>
          <exon e_start="82059" e_stop="82040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATCCGCCAAGAGTTCATGACGTTGCAGGTCCGTTTGCATTATACTCTCTTTCTTTCTCAATTTTATTGTTATTTAATGTTGTGCTTTTTCATAAAAGAGGAGGGTATTTATTCAATTGGTCAATTTTTTTGAAGAATATTTTCTCAAGTTACTCGAAGAATGATGAAAATAACTTCCAAAACAGGTTCTACAAGTGATGTGTACCTCTGTCTTTGAAGAAACAGAGGAGGGGGGCCAGTTTAGGAGTCTCATTTTTTTGATTCATTCATTCATAAGAGTGTATGATAAGAAAAAGTCCTCCAACACACCTCATCTTTACCTCCGTTATTTGTCTATATTATATACAAATGCTTTTAGTATAGTATATTTTGCTAAGTACTATACACGAGAAAATAAGTTACAAATCCACTTATTTCCTGGAAAACTATTTCCTTCATACAGAATACACCCGAAATGTTGAATTTGGGATATATGAGATGGATCCAAACAGAGTGAGATGGATATAAAGTATTCTTAGTCCATGTTCAACTAGTTAGGGAATATGGTGGAGTTGATTGACGTGTGATGATTATTTGATTTTTAGTTGGATATTCACAGTCATATTATCATATATCAATTAGAAAAACCAAGTCTTTCTATGCTAAGAATGAGTTGCTGTCGTCATTGGACTTTTCAACGTTTCTTCTTCACATAGGTGGTTCCATTCTTGGAAAATTGTGGTAGTTTGAATGCTTCAAACAGCAAATTCATTGGAACGTATTAAATGGTTCATATTAATCGATATGTATATAGAGGATTTATGCTATGGACTCCAGGTAATTTAGAATTAAGATTTAGTTGATAAATTGACTGATTGAAGTGTTGGTAAATTGTTTGAGTTCTAGTTGGATTTTTACTGTCATACTATTTTGAAAAGGGAAATCACTTACTCCTTGTAGGATGACTGTCAACCTTAACTAGGTGATAACATCATGAAGGCTTTAGGCATTTAATTCATTACGTCATATGAAATAGGCTGAAGTTAGTTGATCTTGAGCCGACTACTAGTAGTTAGGGATCGAGAAGTAGTTAACCGGTTGATTGATTGATTCAAAGTTTTGGGTGATATTGATGACGTCAATTTATTCGATTCAAACACAATACACATAACATTTTTCCAAAGTGGGAATATAACTAAGTTAAAGACTTAGCGCTTCTAATATTCTGACATATGCTATTTTGAAACATCTCCTACTGTGTTCAATCATAATTTTAAGCTCTCAGCATTAGCATGTGTTGTAGTATGTTTTACAGGATTCTACAATCTATACCATATCGCTAGCCTTTCCTCTCTGAATTTGTACATCTTTTCACTACAATTAGTGTCTCCTTGAGATATAGCATCTTTTTTTTTTTCGATTGGTAAAAGTAATTTGATTCAACAAAATGCTCTTTCTGGTATAGAATTTTTGCAGCATTCTTCCCCTCATTTCACTTATCCTATGCTAATATGATAATCCAAAACTTGTTGCTTCTCATTTAACATTCTTTATGTTTTCTTGTAGGTAATCATGCTTAGAAGATTAGAGTTAGAATTTGTTTCCACGTGAAAAAAGGACTAGTTCTTTTTCCTTTCAAAGAGTAATTATTTATTGATCCCGCTTAGGGATTACACTGGGTATGTTGTTGTATGTGAAAGCTCATACTAGGGTATAGGAGAAGTAAAGAAGTTCTGCAAAAATACAGTTCTCTATGAACAACATCTAGTTAGTATAACTCTGTACTACCAGAGGTTTTATGTTCTCTCTTAAATTTACTAGAAACAACATATTTGCCTTAATTTGCATGAGAATACCTTTTTATCGGTAATTTGTATAACAGTATTATTCTCCCCTCGGAAACTCCATTCCTTTCTCTCCTATTACCCACATTTGGACAGACCAGGTTACATTCCTGCTCTCTATCTCCGTTTCCTTCTTTCTTCTAAAGCTCCAACTGAACATGAGATCTTTCCTTGTATATGCTATTGCCTACTGAACGCCAAAGGGATTCAATACTACGCACTTTAATCAACTTTCTAATGGGCAATGCGTGAGCAAGTGATCCACATCTGCGCAGGATTGTTTACACATATAGCACCAGCTATTTTGTCCTAACTTCCGTTTGCTCAAGTTCTCTGCAGTAAGGATGACTACCCTTGCTGTTGCTGGAAAACATACCTTCATCAGAGCTCTAGGAATCCAGATTGAGATCTGTGGGAGAATTATGTGTTTTCTTTTTAGTAGTCTGTCGTAGGACTACTTAAGTCCAAAATTCCTCATGCTTGCCCATTCCATAACTAAGAATTCTGACCTGTTGGTGTGATGTTTTGCTTTTAAATAGGTTGTGGAACTCACCTATCTCCCACAGCTGTAATGATCAAGTTGCTTAGTTTTGTTGTTACATTTCAGAGAGTAATATTGTTACTTTTTTGAGATCCGGAATGTATTAGGAAGACCTTGCTCAAAGTATCAACTCCGAAAAGCAAAAATGGAGGCATATTGGGAGTTAGGTGGTCTTAACTCTTAAGTGTCTATATGAAGCAAAATAACACCTTTAGATAGTTTTAAGAAAATATTGAGAAGCTTCTTTGATGGTTGAGTTCATTTATGTAATGTTTCCCGCTCTCATTTAAATCTAGTTTCCAAAAAAAAAAATCAAAATCCAAGCATCTTTTTTATGATGTTTTGGGTAGATGCTGGTGGTGGTGACTCCACTTAAAATGAGCTAAATTTATGTGAAAGGACAGCTCTCTTATGTCTTGAGAAAGTTGTTGTTGCATGATGTTGTTTGTTTTGCTTCTTTGTTATTTACTTGTTGAGATCTTGGCTTTCTGTAAGTAGCATGATGTTATCCTGAATTCCAAGAACACCTCTTATGACTCAGGCAACTAGGATGAGAGCTTCAGAAATGAAAAGTAGATGCTCAATGGCTTTGAACAGCGCAAACATTAGCAAAAATCGATACACTGATGTTCTGCCATGTATGCAGATCAGTTTCTATCAATTCTTCGATTGATGTTGAAGTTGTGTATTATAACCTGTGAATAATTATATCAAGCTTCATTCTTCTCAGTTGACAATAACAGGGTTGTTTTGGACCCACCAGCTAGAGGATATATAAATGCAAGCTTCATTAAGGTAGACTTCTACGTCCATTACTTGAAATTAGTTAAGCATGCTACTTGCTTTTGATACTCTCTTGGAAAATGTCAAGCTCTCTTCCACCAATCTGCTTCATGAGCATTATAATGCTCCTTTTTGCTGTAGATATCTGAAGACGTGTCTCAGTTTATTGCAACACAAGGTCCTCTACAACACACTTTTGAAGACTTCTGGGAAATGATAATCCAGCATCGCTGTCCTGTGATTGTGATGCTTACACAATTGTTTGACAACTACAAGGTATTCAACTGTTAAATTACGAGGTAAGCATTGTAATGTTAACAAGACAAGATATCTTGTTCTGTCATGTCACATGTGACAGAAAGAAAAAAATTGAGATTTTTTGTGACAAGGCTTCTGATCCAAAATTTGCTACCTAGGTAAAATTCTAACTTTTCTGCCTTTTTCATCTCTTGATTTTCATCCTCTGTTGTAATTAGATCTAGCATTTTTATACTTTCAGAAAGGTGCAACTGAACCTTTGATACTGTTTTTGCATTTTTTCTTGAGATACTTTGCCCCTTTACTATGTACTCTTCTATATTTTGAGTGGTGAGATAGGTTGGGGAAAAGAAACAGTAGAGAAAAAAAATATCTTAACCATCTCTTCTTGCTTGTCAATCTTTATTTCACACCTCTGTGTATAATTTCTTACACAGAAAGGAACAAACAGGTCGGTATTTTCAATATATATGCTACTACATCTTCTCGAAAAATAGAAAAAAGAAAAGTTTGGTGGTAAATGAATGCTCATTTTCTATCAGCATTCTTTTACATTAGGGGTGTCAAATGGGCGGGTTGGGTTGAAATTGGAAATATTACAATGGGCTGAATAGAAATCGGGTTGGGTCTTGACCCGCCCAAGTTTACGTTGGGCTCATATGGGTTGGGCTCAAATGGGTTGGGTCTTGACCCGCCCAATTTGACCCGATAAATCTCAATAATTTAACATATTATTATTTAACTTTTATAATCACAATTTGAATTTCTGCTCAAGATTTTTTTGTTAAAAAAGTAACAAATGGATAGATAATTCCTAAAAGATGTTGAATAGATAATAATTCATACCTTCAATACAGGAACATATCTTAATAAAAAAATTTAAACGGGTTGAAATTGGAGATTGAATTGGGCTCAATTGAGAATTCTCTTCAAATGGGTTAAGCTTGAATGGGTTGGGATTGAACCCATTTCAAATTATCTTGAGCCCAACCTTTAAAATTTTGTGCGGGTTGGCTGGGTTACCTATGTTTGATTTCATTTTTGACACCTATTTTACATCATCCTTTCTGGCCCTAATTCAAGCCGGAGGTTGTGGCTTTAAGGTCTGTTTAAATTTGATATAGTCATCACTGTCAATCTTTCTGCTAGTCATCACTCATCACTGGCAATCTTTCTGAGTAGGGAATGTTTCTCCTATAGACTATTTCAGAGCTTGGGCATATTTTGATGGAGTTGGTATAAGTAGACTTCTAGTGTGGTGCTTAAAGATATTATATGATCACTAGCTTGTGACTTCGTGATGAATATAAAGCTTGTAGGTGAATAACTTTTGCAGAAAATCAGCTTCTGTTGGGGAAGGTTCCAATTGAAGTTTATATTCCATCACGGGAAAAAGCCCTAGTTTTCCCTTCATATAAGCTTGGTAGATCATTTATCTATTTTTGTGGTCTTTCTCTAGTTTCAAAACTGTTATACTTGGATTTTGTTGGTTATTTAAACTGCAGAAGGATTAGCAAAGTCTAATGCAAAGGCCTGGCGGCTATTCTAGGATTGGAATTTGAGCTTAATAAGTTCTTCTTTCCCTTCTATCTTCCTAATACCCGATTAGCTGAGAAACAATTTCCTGGGCCAAATGGAAAAAAGGAAAATAAGAGACCTTGTTTCATGACCTTTATTCTGGATTATATTCAACTCTTCACACAAAGAGAGAGGCTACTAGTTTCCTTTCAATCACCCTGTATCACCTATTAACCTCTGAATGAATTTAAGCATTTATCTTAGTTGGTTTTTACTTCATTTGTAAGTGATTAAGCTGGTGATTGCGTCATTTTGACTATTTCATCTTTTCATCTTTATGAAAAATGCAATGCAGATTGTCAAGTGTGGGGATTATTTTCAGGCAGATGGTGGTCCCAGAAGATTTGGCAATATATGTATTGTTACGAAGTGGATAAAGACGACTCAGACTTCATTGATTTTGCGATGTCTGGAGGTGAACTATATTGAGGTTAGTAAATTTTTTTCTGTCCGTGTTATACACAAGGAGAAGAGCATGAAGAATCTTATTATGTTGGACATGTATATGGAACCGCTGGAAACTATTTACCTGTTTCATTTGATGGAGAGTGAGAGTTGCTGATGTACATATTTTGATTTCTGCAGCATTTTACATATCCAGACTGATACACTTCTTCTCCAGTAAATATGAGTCCTTGGCTTTAGAATACCCTTCTTTAAAGCTCTATGATCACGCATTGCTCTTTTTGCATAAGTTCTCCCAAAATTTGGGTTTTTTTTTATGAGAGCAAGAATAAAAAGGAATTGCAACATATGGGGAAAATTTTGCAATACTATATGATGATTTCCATCAGTATTGCCTTCAACAATCAATTGGATAGTATGGTGTCATTTTTGCTCGTTGTCTCTTCTTGTATATAATCGATGCAATTCCATCTCTAGCTTCAATTAGTGGTTTTAAACCAAACAGGAAGACTGATTGACTTGTAAACCATCCAGATATGGCTTTGGAAACCTGCCTTTTGTCTATTTCAAGGCCTTGTCTTAGTTGCAGCAAGACTTTTTAAGTAACACAGATAATGATTATGAATGCTAATTAAGTGGAAAAGATTCTTTGGTGGTTCCTCACCCCTCCTTCACTATTTTCAAAGTCCCATTTTGAAGCACTTTATTCTACTGTGGAATCGTTTCTGCCTGCATTCTTGTTCCTTCTTTTACAATCTTTGATGCTTGGATAGACTGTTTAAGATACATGACAACACCTTTTTCCCTCTTCCTTACATGAGGACAACTTGAATGCTAGTTCTATTTGTTTTATCTTGTGTTTAAATTACTTTTATAGCTGTGTACACACCATCCTCGCCAGATCTCACTTGTGGGATTACACTGGGTATGTTGTTATAGCAGATCTAGTTTTTCTCTTGCCATGTGTAGTAGGTGGCAATAGACGACTTGTTTGCGTGAGAAGGCTCACAATTGGTACTACAGTCATTGCGGCAATCCCTTAGCGATCTCTTTCAAGTAATTCTGGCATTTTTATTGTTGGGAGTAAAGAAAAACTTCAGTCTTTCACTTTGCAGTATAAATGCTTTATTTCGTATTATGATATCAGAAATGTGGTTTCTTTAACCTTGTACTTTTAGTGGAATTACCTTTTGGCAATCTTGTAAGTAGTTCATACAATGGTATGTAATTGTGGCCCAATTCTCCCACTCACTTGTCATCCTTACATATAGTTAACACTAATTTCTTGCCCATATTATGAGGGAAATGGCAATAAATGTGTGATCTTTTCTCCTTGCTATTTGCCAGTCAACAGAACCACCTTTGTGTGTTTTACACATTCAATATCCCGACTGGCCTGACCATGGAGTTCCAAAGGACACTCTTGCTGTTCGTGAAATACTGAAACAAACATTTAGTGTCCCACCCAGTCTTGGACCAATTGTGGTGCACTGCAGGTTTCTGTCTATCATATTCCCTGTAGATGTGCCTTTTTTAATGATTCTGTAATTTATCCTTTCTAAAGCCTGACATCACATTCTCTTACACAGTGCAGGTATTGGTAGGACTGGAACATACTGTGCAATCCATAATACCATCCAAAGAATATTGGGTGGAGATAAGTCTGCTCTAGATCTAGTTAACACAATAACCATTTTTAGGTCTCAGCGAATTGGGATGGTTCAAACCATGGTACAACAGCTTCTCTTCGTTATTGAAATTGTGTAATACAACTAAAGCAGATAACTGTTGGAGTAGTCGAGGTTTGCAAAAGCTGGCCCGGACACTACTGTCATAAAAATTTTTATATATAGTTGCCCCAGTGTCCTTATTTTTTGTTTAAAAGCTAGTCAGATGTCTTACATTTTATTCGCTTTACTCTCTTTTTCTCTTTTGGTATTTGTTACACTTACCCCAAGAATCTATACTACTGTGTTTCATCATTCTTAACTAATCTTTGCTCTTAGGTTCTTAAGTACTTGTTGCATGGAATGTCTGTACTAAACTACTATTTTATATTACAGGAGCAATACCTCTTTTGCTA</genome_strand>
        <mrna_strand>AAAAATCCGCCAAGAGTTCATGACGTTGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTAGGATGAGAGCTTCAGAAATGAAAAGTAGATGCTCAATGGCTTTGAACAGCGCAAACATTAGCAAAAATCGATACACTGATGTTCTGCCAT............................................................................................TTGACAATAACAGGGTTGTTTTGGACCCACCAGCTAGAGGATATATAAATGCAAGCTTCATTAAG.................................................................................................................................ATATCTGAAGACGTGTCTCAGTTTATTGCAACACAAGGTCCTCTACAACACACTTTTGAAGACTTCTGGGAAATGATAATCCAGCATCGCTGTCCTGTGATTGTGATGCTTACACAATTGTTTGACAACTACAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTCAAGTGTGGGGATTATTTTCAGGCAGATGGTGGTCCCAGAAGATTTGGCAATATATGTATTGTTACGAAGTGGATAAAGACGACTCAGACTTCATTGATTTTGCGATGTCTGGAGGTGAACTATATTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAATACCTCTTTTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453819" ref_strand="+" ref_description="SGN-E453819 [cSTS-21-A20]">
      <seq>ggattacactaggtatgttgtttttttatagcagatctagtttttctcttgccatgtagtaggtggcaatagactacttgtttctgtgagaaggcttcacaattggtactacagttattgcggcaatctcttatcaatctctttcaagcaattctggcatttttattgttgggagtaaagaaaactttcaagtctttcactttgcagtacaaatgctttatttcgtattatgatatcagaaatgtggtttctttaaccttgtacttttagtggaattaccttttggcaatcttgtaagtagtttctacagtggtatgtaattgtggcccaattctcccactcacttgtcatccttgcatgtagttagcattaatttcttgcccatattatgagggaaatggcaataaatgtgtgatgttttctccttgctatttgccagtcaaaagaaccacctttgtgtgttttacacattcaatatcccgactggcctgaccatggagttccaaaggacactcttgctgttcgtgaaatactgaaacaaacatttagtgtcccacccagtcttggaccaattgtggtgcactgcagtgcaggtattggtaggactggaacatactgtgcaatccataataccatccaaagaatattggttggagataagtctgctctagatctcgttaacacagtaaccatttttaggtctcagcgaattgggatggttcagaccatggtacagcagcttctctttcgtattgaaattgataatacaactaatattacacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="83498" stop="82061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83180" g_stop="82627" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="588" r_length="554" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82626" i_stop="82534" i_length="93">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82533" g_stop="82337" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="785" r_length="197" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E453819" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E453819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83180" e_stop="82627"/>
          <exon e_start="82533" e_stop="82337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTAGTTTTTCTCTTGCCATGTGTAGTAGGTGGCAATAGACGACTTGTTTGCGTGAGAAGGC-TCACAATTGGTACTACAGTCATTGCGGCAATCCCTTAGCGATCTCTTTCAAGTAATTCTGGCATTTTTATTGTTGGGAGTAAAGAAAAACTTC-AGTCTTTCACTTTGCAGTATAAATGCTTTATTTCGTATTATGATATCAGAAATGTGGTTTCTTTAACCTTGTACTTTTAGTGGAATTACCTTTTGGCAATCTTGTAAGTAGTTCATACAATGGTATGTAATTGTGGCCCAATTCTCCCACTCACTTGTCATCCTTACATATAGTTAACACTAATTTCTTGCCCATATTATGAGGGAAATGGCAATAAATGTGTGATCTTTTCTCCTTGCTATTTGCCAGTCAACAGAACCACCTTTGTGTGTTTTACACATTCAATATCCCGACTGGCCTGACCATGGAGTTCCAAAGGACACTCTTGCTGTTCGTGAAATACTGAAACAAACATTTAGTGTCCCACCCAGTCTTGGACCAATTGTGGTGCACTGCAGGTTTCTGTCTATCATATTCCCTGTAGATGTGCCTTTTTTAATGATTCTGTAATTTATCCTTTCTAAAGCCTGACATCACATTCTCTTACACAGTGCAGGTATTGGTAGGACTGGAACATACTGTGCAATCCATAATACCATCCAAAGAATATTGGGTGGAGATAAGTCTGCTCTAGATCTAGTTAACACAATAACCATTTTTAGGTCTCAGCGAATTGGGATGGTTCAAACCATGGTACAACAGCTTCTCTTCGTTATTGAAATTGTGTAATACAACTAA-AGCAGATAAC</genome_strand>
        <mrna_strand>ATCTAGTTTTTCTCTTGCCA--TGTAGTAGGTGGCAATAGACTACTTGTTTCTGTGAGAAGGCTTCACAATTGGTACTACAGTTATTGCGGCAATCTCTTATCAATCTCTTTCAAGCAATTCTGGCATTTTTATTGTTGGGAGTAAAGAAAACTTTCAAGTCTTTCACTTTGCAGTACAAATGCTTTATTTCGTATTATGATATCAGAAATGTGGTTTCTTTAACCTTGTACTTTTAGTGGAATTACCTTTTGGCAATCTTGTAAGTAGTTTCTACAGTGGTATGTAATTGTGGCCCAATTCTCCCACTCACTTGTCATCCTTGCATGTAGTTAGCATTAATTTCTTGCCCATATTATGAGGGAAATGGCAATAAATGTGTGATGTTTTCTCCTTGCTATTTGCCAGTCAAAAGAACCACCTTTGTGTGTTTTACACATTCAATATCCCGACTGGCCTGACCATGGAGTTCCAAAGGACACTCTTGCTGTTCGTGAAATACTGAAACAAACATTTAGTGTCCCACCCAGTCTTGGACCAATTGTGGTGCACTGCAG.............................................................................................TGCAGGTATTGGTAGGACTGGAACATACTGTGCAATCCATAATACCATCCAAAGAATATTGGTTGGAGATAAGTCTGCTCTAGATCTCGTTAACACAGTAACCATTTTTAGGTCTCAGCGAATTGGGATGGTTCAGACCATGGTACAGCAGCTTCTCTTTCGTATTGAAATTG-ATAATACAACTAATATTACACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E425072" ref_strand="+" ref_description="SGN-E425072 [STM-44-D13]">
      <seq>ggattacactaggtatgttgtttttttatagcagatctagtttttctcttgccatgtagtaggtggcaatagactacttgtttctgtgagaaggcttcacaattggtactacagttattgcggcaatctcttatcaatctctttcaagcaattctggcatttttattgttgggagtaaagaaaactttcaagtctttcactttgcagtacaaatgctttatttcgtattatgatatcagaaatgtggtttctttaaccttgtacttttagtggaattaccttttggcaatcttgtaagtagtttctacagtggtatgtaattgtggcccaattctcccactcacttgtcatccttgcatgtagttagcattaatttcttgcccatattatgagggaaatggcaataaatgtgtgatgttttctccttgctatttgccagtcaaaagaaccacctttgtgtgttttacacattcaatatcccgactggcctgaccatggagttccaaaggacactcttgctgttcgtgaaatactgaaacaaacatttagtgtcccacccagtcttggaccaattgtggtgcactgcagtgcaggtattggtaggactggaacatactgtgcaatccataataccatccaaagaatattggttggagataagtctgctctagatctcgttaacacagtaaccatttttaggtctcagcgaaatggggatggttcagaacatggtacagcagcttctcttcgttattgaaatttgatatacaactaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="83498" stop="82047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83180" g_stop="82627" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="588" r_length="554" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82626" i_stop="82534" i_length="93">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82533" g_stop="82346" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="776" r_length="188" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E425072" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E425072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83180" e_stop="82627"/>
          <exon e_start="82533" e_stop="82346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTAGTTTTTCTCTTGCCATGTGTAGTAGGTGGCAATAGACGACTTGTTTGCGTGAGAAGGC-TCACAATTGGTACTACAGTCATTGCGGCAATCCCTTAGCGATCTCTTTCAAGTAATTCTGGCATTTTTATTGTTGGGAGTAAAGAAAAACTTC-AGTCTTTCACTTTGCAGTATAAATGCTTTATTTCGTATTATGATATCAGAAATGTGGTTTCTTTAACCTTGTACTTTTAGTGGAATTACCTTTTGGCAATCTTGTAAGTAGTTCATACAATGGTATGTAATTGTGGCCCAATTCTCCCACTCACTTGTCATCCTTACATATAGTTAACACTAATTTCTTGCCCATATTATGAGGGAAATGGCAATAAATGTGTGATCTTTTCTCCTTGCTATTTGCCAGTCAACAGAACCACCTTTGTGTGTTTTACACATTCAATATCCCGACTGGCCTGACCATGGAGTTCCAAAGGACACTCTTGCTGTTCGTGAAATACTGAAACAAACATTTAGTGTCCCACCCAGTCTTGGACCAATTGTGGTGCACTGCAGGTTTCTGTCTATCATATTCCCTGTAGATGTGCCTTTTTTAATGATTCTGTAATTTATCCTTTCTAAAGCCTGACATCACATTCTCTTACACAGTGCAGGTATTGGTAGGACTGGAACATACTGTGCAATCCATAATACCATCCAAAGAATATTGGGTGGAGATAAGTCTGCTCTAGATCTAGTTAACACAATAACCATTTTTAGGTCTCAGCG-AATTGGGATGGTTCAAACCATGGTACAACAGCTTCTCTTCGTTATTGAAATTGTGTAATACAACTAAA</genome_strand>
        <mrna_strand>ATCTAGTTTTTCTCTTGCCA--TGTAGTAGGTGGCAATAGACTACTTGTTTCTGTGAGAAGGCTTCACAATTGGTACTACAGTTATTGCGGCAATCTCTTATCAATCTCTTTCAAGCAATTCTGGCATTTTTATTGTTGGGAGTAAAGAAAACTTTCAAGTCTTTCACTTTGCAGTACAAATGCTTTATTTCGTATTATGATATCAGAAATGTGGTTTCTTTAACCTTGTACTTTTAGTGGAATTACCTTTTGGCAATCTTGTAAGTAGTTTCTACAGTGGTATGTAATTGTGGCCCAATTCTCCCACTCACTTGTCATCCTTGCATGTAGTTAGCATTAATTTCTTGCCCATATTATGAGGGAAATGGCAATAAATGTGTGATGTTTTCTCCTTGCTATTTGCCAGTCAAAAGAACCACCTTTGTGTGTTTTACACATTCAATATCCCGACTGGCCTGACCATGGAGTTCCAAAGGACACTCTTGCTGTTCGTGAAATACTGAAACAAACATTTAGTGTCCCACCCAGTCTTGGACCAATTGTGGTGCACTGCAG.............................................................................................TGCAGGTATTGGTAGGACTGGAACATACTGTGCAATCCATAATACCATCCAAAGAATATTGGTTGGAGATAAGTCTGCTCTAGATCTCGTTAACACAGTAACCATTTTTAGGTCTCAGCGAAATGGGGATGGTTCAGAACATGGTACAGCAGCTTCTCTTCGTTATTGAAATT-TGATATACAACTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251726" ref_strand="+" ref_description="SGN-E251726 [cLEG-15-I24]">
      <seq>agcatcgctgtcctgtgattgtgatgcttacacaattgtttgacaactacaagattgtcaagtgtggggattattttcaggcagatggtggtcccagaagatttggcaatatatgtattgttacgaagtggataaagacgactcagacttcattgattttgcgatgtctggaggtgaactatattgagtcaacagaaccacctttgtgtgttttacacattcaatatcccgactggcctgaccatggagttccaaaggacactcttgctgttcgtgaaatactgaaacaaacatttagtgtcccacccagtcttggaccaattgtggtgcactgcagtgcaggtattggtaggactggaacatactgtgcaatccataataccatccaaagaatattgggtggagataagtctgctctagatctagttaacacaataaccattttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86440" stop="82124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86140" g_stop="86088" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86087" i_stop="84233" i_length="1855">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84232" g_stop="84098" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="188" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84097" i_stop="82776" i_length="1322">
            <donor d_prob="0.857" d_score="1.00"/>
            <acceptor a_prob="0.116" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82775" g_stop="82627" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="337" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82626" i_stop="82534" i_length="93">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82533" g_stop="82424" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="447" r_length="110" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E251726" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86140" e_stop="86088"/>
          <exon e_start="84232" e_stop="84098"/>
          <exon e_start="82775" e_stop="82627"/>
          <exon e_start="82533" e_stop="82424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATCGCTGTCCTGTGATTGTGATGCTTACACAATTGTTTGACAACTACAAGGTATTCAACTGTTAAATTACGAGGTAAGCATTGTAATGTTAACAAGACAAGATATCTTGTTCTGTCATGTCACATGTGACAGAAAGAAAAAAATTGAGATTTTTTGTGACAAGGCTTCTGATCCAAAATTTGCTACCTAGGTAAAATTCTAACTTTTCTGCCTTTTTCATCTCTTGATTTTCATCCTCTGTTGTAATTAGATCTAGCATTTTTATACTTTCAGAAAGGTGCAACTGAACCTTTGATACTGTTTTTGCATTTTTTCTTGAGATACTTTGCCCCTTTACTATGTACTCTTCTATATTTTGAGTGGTGAGATAGGTTGGGGAAAAGAAACAGTAGAGAAAAAAAATATCTTAACCATCTCTTCTTGCTTGTCAATCTTTATTTCACACCTCTGTGTATAATTTCTTACACAGAAAGGAACAAACAGGTCGGTATTTTCAATATATATGCTACTACATCTTCTCGAAAAATAGAAAAAAGAAAAGTTTGGTGGTAAATGAATGCTCATTTTCTATCAGCATTCTTTTACATTAGGGGTGTCAAATGGGCGGGTTGGGTTGAAATTGGAAATATTACAATGGGCTGAATAGAAATCGGGTTGGGTCTTGACCCGCCCAAGTTTACGTTGGGCTCATATGGGTTGGGCTCAAATGGGTTGGGTCTTGACCCGCCCAATTTGACCCGATAAATCTCAATAATTTAACATATTATTATTTAACTTTTATAATCACAATTTGAATTTCTGCTCAAGATTTTTTTGTTAAAAAAGTAACAAATGGATAGATAATTCCTAAAAGATGTTGAATAGATAATAATTCATACCTTCAATACAGGAACATATCTTAATAAAAAAATTTAAACGGGTTGAAATTGGAGATTGAATTGGGCTCAATTGAGAATTCTCTTCAAATGGGTTAAGCTTGAATGGGTTGGGATTGAACCCATTTCAAATTATCTTGAGCCCAACCTTTAAAATTTTGTGCGGGTTGGCTGGGTTACCTATGTTTGATTTCATTTTTGACACCTATTTTACATCATCCTTTCTGGCCCTAATTCAAGCCGGAGGTTGTGGCTTTAAGGTCTGTTTAAATTTGATATAGTCATCACTGTCAATCTTTCTGCTAGTCATCACTCATCACTGGCAATCTTTCTGAGTAGGGAATGTTTCTCCTATAGACTATTTCAGAGCTTGGGCATATTTTGATGGAGTTGGTATAAGTAGACTTCTAGTGTGGTGCTTAAAGATATTATATGATCACTAGCTTGTGACTTCGTGATGAATATAAAGCTTGTAGGTGAATAACTTTTGCAGAAAATCAGCTTCTGTTGGGGAAGGTTCCAATTGAAGTTTATATTCCATCACGGGAAAAAGCCCTAGTTTTCCCTTCATATAAGCTTGGTAGATCATTTATCTATTTTTGTGGTCTTTCTCTAGTTTCAAAACTGTTATACTTGGATTTTGTTGGTTATTTAAACTGCAGAAGGATTAGCAAAGTCTAATGCAAAGGCCTGGCGGCTATTCTAGGATTGGAATTTGAGCTTAATAAGTTCTTCTTTCCCTTCTATCTTCCTAATACCCGATTAGCTGAGAAACAATTTCCTGGGCCAAATGGAAAAAAGGAAAATAAGAGACCTTGTTTCATGACCTTTATTCTGGATTATATTCAACTCTTCACACAAAGAGAGAGGCTACTAGTTTCCTTTCAATCACCCTGTATCACCTATTAACCTCTGAATGAATTTAAGCATTTATCTTAGTTGGTTTTTACTTCATTTGTAAGTGATTAAGCTGGTGATTGCGTCATTTTGACTATTTCATCTTTTCATCTTTATGAAAAATGCAATGCAGATTGTCAAGTGTGGGGATTATTTTCAGGCAGATGGTGGTCCCAGAAGATTTGGCAATATATGTATTGTTACGAAGTGGATAAAGACGACTCAGACTTCATTGATTTTGCGATGTCTGGAGGTGAACTATATTGAGGTTAGTAAATTTTTTTCTGTCCGTGTTATACACAAGGAGAAGAGCATGAAGAATCTTATTATGTTGGACATGTATATGGAACCGCTGGAAACTATTTACCTGTTTCATTTGATGGAGAGTGAGAGTTGCTGATGTACATATTTTGATTTCTGCAGCATTTTACATATCCAGACTGATACACTTCTTCTCCAGTAAATATGAGTCCTTGGCTTTAGAATACCCTTCTTTAAAGCTCTATGATCACGCATTGCTCTTTTTGCATAAGTTCTCCCAAAATTTGGGTTTTTTTTTATGAGAGCAAGAATAAAAAGGAATTGCAACATATGGGGAAAATTTTGCAATACTATATGATGATTTCCATCAGTATTGCCTTCAACAATCAATTGGATAGTATGGTGTCATTTTTGCTCGTTGTCTCTTCTTGTATATAATCGATGCAATTCCATCTCTAGCTTCAATTAGTGGTTTTAAACCAAACAGGAAGACTGATTGACTTGTAAACCATCCAGATATGGCTTTGGAAACCTGCCTTTTGTCTATTTCAAGGCCTTGTCTTAGTTGCAGCAAGACTTTTTAAGTAACACAGATAATGATTATGAATGCTAATTAAGTGGAAAAGATTCTTTGGTGGTTCCTCACCCCTCCTTCACTATTTTCAAAGTCCCATTTTGAAGCACTTTATTCTACTGTGGAATCGTTTCTGCCTGCATTCTTGTTCCTTCTTTTACAATCTTTGATGCTTGGATAGACTGTTTAAGATACATGACAACACCTTTTTCCCTCTTCCTTACATGAGGACAACTTGAATGCTAGTTCTATTTGTTTTATCTTGTGTTTAAATTACTTTTATAGCTGTGTACACACCATCCTCGCCAGATCTCACTTGTGGGATTACACTGGGTATGTTGTTATAGCAGATCTAGTTTTTCTCTTGCCATGTGTAGTAGGTGGCAATAGACGACTTGTTTGCGTGAGAAGGCTCACAATTGGTACTACAGTCATTGCGGCAATCCCTTAGCGATCTCTTTCAAGTAATTCTGGCATTTTTATTGTTGGGAGTAAAGAAAAACTTCAGTCTTTCACTTTGCAGTATAAATGCTTTATTTCGTATTATGATATCAGAAATGTGGTTTCTTTAACCTTGTACTTTTAGTGGAATTACCTTTTGGCAATCTTGTAAGTAGTTCATACAATGGTATGTAATTGTGGCCCAATTCTCCCACTCACTTGTCATCCTTACATATAGTTAACACTAATTTCTTGCCCATATTATGAGGGAAATGGCAATAAATGTGTGATCTTTTCTCCTTGCTATTTGCCAGTCAACAGAACCACCTTTGTGTGTTTTACACATTCAATATCCCGACTGGCCTGACCATGGAGTTCCAAAGGACACTCTTGCTGTTCGTGAAATACTGAAACAAACATTTAGTGTCCCACCCAGTCTTGGACCAATTGTGGTGCACTGCAGGTTTCTGTCTATCATATTCCCTGTAGATGTGCCTTTTTTAATGATTCTGTAATTTATCCTTTCTAAAGCCTGACATCACATTCTCTTACACAGTGCAGGTATTGGTAGGACTGGAACATACTGTGCAATCCATAATACCATCCAAAGAATATTGGGTGGAGATAAGTCTGCTCTAGATCTAGTTAACACAATAACCATTTTTA</genome_strand>
        <mrna_strand>AGCATCGCTGTCCTGTGATTGTGATGCTTACACAATTGTTTGACAACTACAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTCAAGTGTGGGGATTATTTTCAGGCAGATGGTGGTCCCAGAAGATTTGGCAATATATGTATTGTTACGAAGTGGATAAAGACGACTCAGACTTCATTGATTTTGCGATGTCTGGAGGTGAACTATATTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACAGAACCACCTTTGTGTGTTTTACACATTCAATATCCCGACTGGCCTGACCATGGAGTTCCAAAGGACACTCTTGCTGTTCGTGAAATACTGAAACAAACATTTAGTGTCCCACCCAGTCTTGGACCAATTGTGGTGCACTGCAG.............................................................................................TGCAGGTATTGGTAGGACTGGAACATACTGTGCAATCCATAATACCATCCAAAGAATATTGGGTGGAGATAAGTCTGCTCTAGATCTAGTTAACACAATAACCATTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E538300" ref_strand="+" ref_description="SGN-E538300 [TUS-57-G10]">
      <seq>aagcagtgaagtgaacatcctaccacggggtgcggactgtccattcggaatcggaggcagatatcagcgatggccaccgccggtaaactcgtgtcgtcgtcgtcgtcgtcacccaagcctttcgatttctccgacgattcagttcctaagagagtcgttctgtcgagtgatcagcagcgttattgcttggaagtactcaaagtcttcaaggacaagaggttttctgctcccgaaaaaatccgccaagagttcatgacgttgcaggcaactaggatgagagcttcagaaatgaaaagtagatgctcaatggctttgaacagcgcaaacattagcaaaaatcgatacactgatgttctgccatttgacaataacagggttgttttggacccaccagctagaggatatataaatgcaagcttcattaagatatctgaagacgtgtctcagtttattgcaacacaaggtcctctacaacacacttttgaagacttctgggaaatgataatccagcatcgctgtcctgtgattgtgatgcttacacaattgtttgacaactacaagattgtcaagtgtggggattattttcaggcagatggtggtcccagaagatttggcaatatatgtattgttacgaagtggataaagacgactcagacttcattgattttgcgatgtctggaggtgaactatattgagtcaacagaaccacctttgtgtgttttacacattcaatatcccgactggnnctgacatggagttccaaaggacactcttgctgttcgtgaatactgaaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90046" stop="82374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89746" g_stop="89483" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89482" i_stop="86606" i_length="2877">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.637" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86605" g_stop="86509" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="361" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86508" i_stop="86417" i_length="92">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86416" g_stop="86352" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="426" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86351" i_stop="86223" i_length="129">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86222" g_stop="86088" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="561" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86087" i_stop="84233" i_length="1855">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84232" g_stop="84098" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="696" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84097" i_stop="82776" i_length="1322">
            <donor d_prob="0.857" d_score="1.00"/>
            <acceptor a_prob="0.116" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82775" g_stop="82674" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="697" r_stop="797" r_length="101" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E538300" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89746" e_stop="89483"/>
          <exon e_start="86605" e_stop="86509"/>
          <exon e_start="86416" e_stop="86352"/>
          <exon e_start="86222" e_stop="86088"/>
          <exon e_start="84232" e_stop="84098"/>
          <exon e_start="82775" e_stop="82674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAGTGAAGTGAACATCCTACCACGGGGTGCGGACTGTCCATTCGGAATCGGAGGCAGATATCAGCGATGGCCACCGCCGGTAAACTCGTGTCGTCGTCGTCGTCGTCACCCAAGCCTTTCGATTTCTCCGACGATTCAGTTCCTAAGAGAGTCGTTCTGTCGAGTGATCAGCAGCGTTATTGCTTGGAAGTACTCAAAGTCTTCAAGGACAAGAGGTTTTCTGCTCCCGAAAAAATCCGCCAAGAGTTCATGACGTTGCAGGTCCGTTTGCATTATACTCTCTTTCTTTCTCAATTTTATTGTTATTTAATGTTGTGCTTTTTCATAAAAGAGGAGGGTATTTATTCAATTGGTCAATTTTTTTGAAGAATATTTTCTCAAGTTACTCGAAGAATGATGAAAATAACTTCCAAAACAGGTTCTACAAGTGATGTGTACCTCTGTCTTTGAAGAAACAGAGGAGGGGGGCCAGTTTAGGAGTCTCATTTTTTTGATTCATTCATTCATAAGAGTGTATGATAAGAAAAAGTCCTCCAACACACCTCATCTTTACCTCCGTTATTTGTCTATATTATATACAAATGCTTTTAGTATAGTATATTTTGCTAAGTACTATACACGAGAAAATAAGTTACAAATCCACTTATTTCCTGGAAAACTATTTCCTTCATACAGAATACACCCGAAATGTTGAATTTGGGATATATGAGATGGATCCAAACAGAGTGAGATGGATATAAAGTATTCTTAGTCCATGTTCAACTAGTTAGGGAATATGGTGGAGTTGATTGACGTGTGATGATTATTTGATTTTTAGTTGGATATTCACAGTCATATTATCATATATCAATTAGAAAAACCAAGTCTTTCTATGCTAAGAATGAGTTGCTGTCGTCATTGGACTTTTCAACGTTTCTTCTTCACATAGGTGGTTCCATTCTTGGAAAATTGTGGTAGTTTGAATGCTTCAAACAGCAAATTCATTGGAACGTATTAAATGGTTCATATTAATCGATATGTATATAGAGGATTTATGCTATGGACTCCAGGTAATTTAGAATTAAGATTTAGTTGATAAATTGACTGATTGAAGTGTTGGTAAATTGTTTGAGTTCTAGTTGGATTTTTACTGTCATACTATTTTGAAAAGGGAAATCACTTACTCCTTGTAGGATGACTGTCAACCTTAACTAGGTGATAACATCATGAAGGCTTTAGGCATTTAATTCATTACGTCATATGAAATAGGCTGAAGTTAGTTGATCTTGAGCCGACTACTAGTAGTTAGGGATCGAGAAGTAGTTAACCGGTTGATTGATTGATTCAAAGTTTTGGGTGATATTGATGACGTCAATTTATTCGATTCAAACACAATACACATAACATTTTTCCAAAGTGGGAATATAACTAAGTTAAAGACTTAGCGCTTCTAATATTCTGACATATGCTATTTTGAAACATCTCCTACTGTGTTCAATCATAATTTTAAGCTCTCAGCATTAGCATGTGTTGTAGTATGTTTTACAGGATTCTACAATCTATACCATATCGCTAGCCTTTCCTCTCTGAATTTGTACATCTTTTCACTACAATTAGTGTCTCCTTGAGATATAGCATCTTTTTTTTTTTCGATTGGTAAAAGTAATTTGATTCAACAAAATGCTCTTTCTGGTATAGAATTTTTGCAGCATTCTTCCCCTCATTTCACTTATCCTATGCTAATATGATAATCCAAAACTTGTTGCTTCTCATTTAACATTCTTTATGTTTTCTTGTAGGTAATCATGCTTAGAAGATTAGAGTTAGAATTTGTTTCCACGTGAAAAAAGGACTAGTTCTTTTTCCTTTCAAAGAGTAATTATTTATTGATCCCGCTTAGGGATTACACTGGGTATGTTGTTGTATGTGAAAGCTCATACTAGGGTATAGGAGAAGTAAAGAAGTTCTGCAAAAATACAGTTCTCTATGAACAACATCTAGTTAGTATAACTCTGTACTACCAGAGGTTTTATGTTCTCTCTTAAATTTACTAGAAACAACATATTTGCCTTAATTTGCATGAGAATACCTTTTTATCGGTAATTTGTATAACAGTATTATTCTCCCCTCGGAAACTCCATTCCTTTCTCTCCTATTACCCACATTTGGACAGACCAGGTTACATTCCTGCTCTCTATCTCCGTTTCCTTCTTTCTTCTAAAGCTCCAACTGAACATGAGATCTTTCCTTGTATATGCTATTGCCTACTGAACGCCAAAGGGATTCAATACTACGCACTTTAATCAACTTTCTAATGGGCAATGCGTGAGCAAGTGATCCACATCTGCGCAGGATTGTTTACACATATAGCACCAGCTATTTTGTCCTAACTTCCGTTTGCTCAAGTTCTCTGCAGTAAGGATGACTACCCTTGCTGTTGCTGGAAAACATACCTTCATCAGAGCTCTAGGAATCCAGATTGAGATCTGTGGGAGAATTATGTGTTTTCTTTTTAGTAGTCTGTCGTAGGACTACTTAAGTCCAAAATTCCTCATGCTTGCCCATTCCATAACTAAGAATTCTGACCTGTTGGTGTGATGTTTTGCTTTTAAATAGGTTGTGGAACTCACCTATCTCCCACAGCTGTAATGATCAAGTTGCTTAGTTTTGTTGTTACATTTCAGAGAGTAATATTGTTACTTTTTTGAGATCCGGAATGTATTAGGAAGACCTTGCTCAAAGTATCAACTCCGAAAAGCAAAAATGGAGGCATATTGGGAGTTAGGTGGTCTTAACTCTTAAGTGTCTATATGAAGCAAAATAACACCTTTAGATAGTTTTAAGAAAATATTGAGAAGCTTCTTTGATGGTTGAGTTCATTTATGTAATGTTTCCCGCTCTCATTTAAATCTAGTTTCCAAAAAAAAAAATCAAAATCCAAGCATCTTTTTTATGATGTTTTGGGTAGATGCTGGTGGTGGTGACTCCACTTAAAATGAGCTAAATTTATGTGAAAGGACAGCTCTCTTATGTCTTGAGAAAGTTGTTGTTGCATGATGTTGTTTGTTTTGCTTCTTTGTTATTTACTTGTTGAGATCTTGGCTTTCTGTAAGTAGCATGATGTTATCCTGAATTCCAAGAACACCTCTTATGACTCAGGCAACTAGGATGAGAGCTTCAGAAATGAAAAGTAGATGCTCAATGGCTTTGAACAGCGCAAACATTAGCAAAAATCGATACACTGATGTTCTGCCATGTATGCAGATCAGTTTCTATCAATTCTTCGATTGATGTTGAAGTTGTGTATTATAACCTGTGAATAATTATATCAAGCTTCATTCTTCTCAGTTGACAATAACAGGGTTGTTTTGGACCCACCAGCTAGAGGATATATAAATGCAAGCTTCATTAAGGTAGACTTCTACGTCCATTACTTGAAATTAGTTAAGCATGCTACTTGCTTTTGATACTCTCTTGGAAAATGTCAAGCTCTCTTCCACCAATCTGCTTCATGAGCATTATAATGCTCCTTTTTGCTGTAGATATCTGAAGACGTGTCTCAGTTTATTGCAACACAAGGTCCTCTACAACACACTTTTGAAGACTTCTGGGAAATGATAATCCAGCATCGCTGTCCTGTGATTGTGATGCTTACACAATTGTTTGACAACTACAAGGTATTCAACTGTTAAATTACGAGGTAAGCATTGTAATGTTAACAAGACAAGATATCTTGTTCTGTCATGTCACATGTGACAGAAAGAAAAAAATTGAGATTTTTTGTGACAAGGCTTCTGATCCAAAATTTGCTACCTAGGTAAAATTCTAACTTTTCTGCCTTTTTCATCTCTTGATTTTCATCCTCTGTTGTAATTAGATCTAGCATTTTTATACTTTCAGAAAGGTGCAACTGAACCTTTGATACTGTTTTTGCATTTTTTCTTGAGATACTTTGCCCCTTTACTATGTACTCTTCTATATTTTGAGTGGTGAGATAGGTTGGGGAAAAGAAACAGTAGAGAAAAAAAATATCTTAACCATCTCTTCTTGCTTGTCAATCTTTATTTCACACCTCTGTGTATAATTTCTTACACAGAAAGGAACAAACAGGTCGGTATTTTCAATATATATGCTACTACATCTTCTCGAAAAATAGAAAAAAGAAAAGTTTGGTGGTAAATGAATGCTCATTTTCTATCAGCATTCTTTTACATTAGGGGTGTCAAATGGGCGGGTTGGGTTGAAATTGGAAATATTACAATGGGCTGAATAGAAATCGGGTTGGGTCTTGACCCGCCCAAGTTTACGTTGGGCTCATATGGGTTGGGCTCAAATGGGTTGGGTCTTGACCCGCCCAATTTGACCCGATAAATCTCAATAATTTAACATATTATTATTTAACTTTTATAATCACAATTTGAATTTCTGCTCAAGATTTTTTTGTTAAAAAAGTAACAAATGGATAGATAATTCCTAAAAGATGTTGAATAGATAATAATTCATACCTTCAATACAGGAACATATCTTAATAAAAAAATTTAAACGGGTTGAAATTGGAGATTGAATTGGGCTCAATTGAGAATTCTCTTCAAATGGGTTAAGCTTGAATGGGTTGGGATTGAACCCATTTCAAATTATCTTGAGCCCAACCTTTAAAATTTTGTGCGGGTTGGCTGGGTTACCTATGTTTGATTTCATTTTTGACACCTATTTTACATCATCCTTTCTGGCCCTAATTCAAGCCGGAGGTTGTGGCTTTAAGGTCTGTTTAAATTTGATATAGTCATCACTGTCAATCTTTCTGCTAGTCATCACTCATCACTGGCAATCTTTCTGAGTAGGGAATGTTTCTCCTATAGACTATTTCAGAGCTTGGGCATATTTTGATGGAGTTGGTATAAGTAGACTTCTAGTGTGGTGCTTAAAGATATTATATGATCACTAGCTTGTGACTTCGTGATGAATATAAAGCTTGTAGGTGAATAACTTTTGCAGAAAATCAGCTTCTGTTGGGGAAGGTTCCAATTGAAGTTTATATTCCATCACGGGAAAAAGCCCTAGTTTTCCCTTCATATAAGCTTGGTAGATCATTTATCTATTTTTGTGGTCTTTCTCTAGTTTCAAAACTGTTATACTTGGATTTTGTTGGTTATTTAAACTGCAGAAGGATTAGCAAAGTCTAATGCAAAGGCCTGGCGGCTATTCTAGGATTGGAATTTGAGCTTAATAAGTTCTTCTTTCCCTTCTATCTTCCTAATACCCGATTAGCTGAGAAACAATTTCCTGGGCCAAATGGAAAAAAGGAAAATAAGAGACCTTGTTTCATGACCTTTATTCTGGATTATATTCAACTCTTCACACAAAGAGAGAGGCTACTAGTTTCCTTTCAATCACCCTGTATCACCTATTAACCTCTGAATGAATTTAAGCATTTATCTTAGTTGGTTTTTACTTCATTTGTAAGTGATTAAGCTGGTGATTGCGTCATTTTGACTATTTCATCTTTTCATCTTTATGAAAAATGCAATGCAGATTGTCAAGTGTGGGGATTATTTTCAGGCAGATGGTGGTCCCAGAAGATTTGGCAATATATGTATTGTTACGAAGTGGATAAAGACGACTCAGACTTCATTGATTTTGCGATGTCTGGAGGTGAACTATATTGAGGTTAGTAAATTTTTTTCTGTCCGTGTTATACACAAGGAGAAGAGCATGAAGAATCTTATTATGTTGGACATGTATATGGAACCGCTGGAAACTATTTACCTGTTTCATTTGATGGAGAGTGAGAGTTGCTGATGTACATATTTTGATTTCTGCAGCATTTTACATATCCAGACTGATACACTTCTTCTCCAGTAAATATGAGTCCTTGGCTTTAGAATACCCTTCTTTAAAGCTCTATGATCACGCATTGCTCTTTTTGCATAAGTTCTCCCAAAATTTGGGTTTTTTTTTATGAGAGCAAGAATAAAAAGGAATTGCAACATATGGGGAAAATTTTGCAATACTATATGATGATTTCCATCAGTATTGCCTTCAACAATCAATTGGATAGTATGGTGTCATTTTTGCTCGTTGTCTCTTCTTGTATATAATCGATGCAATTCCATCTCTAGCTTCAATTAGTGGTTTTAAACCAAACAGGAAGACTGATTGACTTGTAAACCATCCAGATATGGCTTTGGAAACCTGCCTTTTGTCTATTTCAAGGCCTTGTCTTAGTTGCAGCAAGACTTTTTAAGTAACACAGATAATGATTATGAATGCTAATTAAGTGGAAAAGATTCTTTGGTGGTTCCTCACCCCTCCTTCACTATTTTCAAAGTCCCATTTTGAAGCACTTTATTCTACTGTGGAATCGTTTCTGCCTGCATTCTTGTTCCTTCTTTTACAATCTTTGATGCTTGGATAGACTGTTTAAGATACATGACAACACCTTTTTCCCTCTTCCTTACATGAGGACAACTTGAATGCTAGTTCTATTTGTTTTATCTTGTGTTTAAATTACTTTTATAGCTGTGTACACACCATCCTCGCCAGATCTCACTTGTGGGATTACACTGGGTATGTTGTTATAGCAGATCTAGTTTTTCTCTTGCCATGTGTAGTAGGTGGCAATAGACGACTTGTTTGCGTGAGAAGGCTCACAATTGGTACTACAGTCATTGCGGCAATCCCTTAGCGATCTCTTTCAAGTAATTCTGGCATTTTTATTGTTGGGAGTAAAGAAAAACTTCAGTCTTTCACTTTGCAGTATAAATGCTTTATTTCGTATTATGATATCAGAAATGTGGTTTCTTTAACCTTGTACTTTTAGTGGAATTACCTTTTGGCAATCTTGTAAGTAGTTCATACAATGGTATGTAATTGTGGCCCAATTCTCCCACTCACTTGTCATCCTTACATATAGTTAACACTAATTTCTTGCCCATATTATGAGGGAAATGGCAATAAATGTGTGATCTTTTCTCCTTGCTATTTGCCAGTCAACAGAACCACCTTTGTGTGTTTTACACATTCAATATCCCGACTGG-CCTGACCATGGAGTTCCAAAGGACACTCTTGCTGTTCGTGAAATACTGAAACAA</genome_strand>
        <mrna_strand>AAGCAGTGAAGTGAACATCCTACCACGGGGTGCGGACTGTCCATTCGGAATCGGAGGCAGATATCAGCGATGGCCACCGCCGGTAAACTCGTGTCGTCGTCGTCGTCGTCACCCAAGCCTTTCGATTTCTCCGACGATTCAGTTCCTAAGAGAGTCGTTCTGTCGAGTGATCAGCAGCGTTATTGCTTGGAAGTACTCAAAGTCTTCAAGGACAAGAGGTTTTCTGCTCCCGAAAAAATCCGCCAAGAGTTCATGACGTTGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTAGGATGAGAGCTTCAGAAATGAAAAGTAGATGCTCAATGGCTTTGAACAGCGCAAACATTAGCAAAAATCGATACACTGATGTTCTGCCAT............................................................................................TTGACAATAACAGGGTTGTTTTGGACCCACCAGCTAGAGGATATATAAATGCAAGCTTCATTAAG.................................................................................................................................ATATCTGAAGACGTGTCTCAGTTTATTGCAACACAAGGTCCTCTACAACACACTTTTGAAGACTTCTGGGAAATGATAATCCAGCATCGCTGTCCTGTGATTGTGATGCTTACACAATTGTTTGACAACTACAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTCAAGTGTGGGGATTATTTTCAGGCAGATGGTGGTCCCAGAAGATTTGGCAATATATGTATTGTTACGAAGTGGATAAAGACGACTCAGACTTCATTGATTTTGCGATGTCTGGAGGTGAACTATATTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACAGAACCACCTTTGTGTGTTTTACACATTCAATATCCCGACTGGNNCTGA-CATGGAGTTCCAAAGGACACTCTTGCTGTTCGTG-AATACTGAAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E538351" ref_strand="+" ref_description="SGN-E538351 [TUS-57-H19]">
      <seq>gtgaagtgaacatcctaccacggggtgcggactgtccattcggaatcggaggcagatatcagcgatggccaccgccggtaaactcgtgtcgtcgtcgtcgtcgtcacccaagcctttcgatttctccgacgattcagttcctaagagagtcgttctgtcgagtgatcagcagcgttattgcttggaagtactcaaagtcttcaaggacaagaggttttctgctcccgaaaaaatccgccaagagttcatgacgttgcaggcaactaggatgagagcttcagaaatgaaaagtagatgctcaatggctttgaacagcgcaaacattagcaaaaatcgatacactgatgttctgccatttgacaataacagggttgttttggacccaccagctagaggatatataaatgcaagcttcattaagatatctgaagacgtgtctcagtttattgcaacacaaggtcctctacaacacacttttgaagacttctgggaaatgataatccagcatcgctgtcctgtgattgtgatgcttacacaattgtttgacaactacaagattgtcaagtgtggggattattttcaggcagatggtggtcccagaagatttggcaatatatgtattgttacgaagtggataaagacgactcagacttcattgattttgcgatgtctggaggtgaactatattgagtcaacagaaccacctttgtgtggtttacacattcaatatcccgactggcctgaccatggagttccaaggacactcttgctgttcgtgaatactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90041" stop="82379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89741" g_stop="89483" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89482" i_stop="86606" i_length="2877">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.637" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86605" g_stop="86509" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="356" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86508" i_stop="86417" i_length="92">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86416" g_stop="86352" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="421" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86351" i_stop="86223" i_length="129">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86222" g_stop="86088" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="556" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86087" i_stop="84233" i_length="1855">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84232" g_stop="84098" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="691" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84097" i_stop="82776" i_length="1322">
            <donor d_prob="0.857" d_score="1.00"/>
            <acceptor a_prob="0.116" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82775" g_stop="82679" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="786" r_length="95" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E538351" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89741" e_stop="89483"/>
          <exon e_start="86605" e_stop="86509"/>
          <exon e_start="86416" e_stop="86352"/>
          <exon e_start="86222" e_stop="86088"/>
          <exon e_start="84232" e_stop="84098"/>
          <exon e_start="82775" e_stop="82679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAGTGAACATCCTACCACGGGGTGCGGACTGTCCATTCGGAATCGGAGGCAGATATCAGCGATGGCCACCGCCGGTAAACTCGTGTCGTCGTCGTCGTCGTCACCCAAGCCTTTCGATTTCTCCGACGATTCAGTTCCTAAGAGAGTCGTTCTGTCGAGTGATCAGCAGCGTTATTGCTTGGAAGTACTCAAAGTCTTCAAGGACAAGAGGTTTTCTGCTCCCGAAAAAATCCGCCAAGAGTTCATGACGTTGCAGGTCCGTTTGCATTATACTCTCTTTCTTTCTCAATTTTATTGTTATTTAATGTTGTGCTTTTTCATAAAAGAGGAGGGTATTTATTCAATTGGTCAATTTTTTTGAAGAATATTTTCTCAAGTTACTCGAAGAATGATGAAAATAACTTCCAAAACAGGTTCTACAAGTGATGTGTACCTCTGTCTTTGAAGAAACAGAGGAGGGGGGCCAGTTTAGGAGTCTCATTTTTTTGATTCATTCATTCATAAGAGTGTATGATAAGAAAAAGTCCTCCAACACACCTCATCTTTACCTCCGTTATTTGTCTATATTATATACAAATGCTTTTAGTATAGTATATTTTGCTAAGTACTATACACGAGAAAATAAGTTACAAATCCACTTATTTCCTGGAAAACTATTTCCTTCATACAGAATACACCCGAAATGTTGAATTTGGGATATATGAGATGGATCCAAACAGAGTGAGATGGATATAAAGTATTCTTAGTCCATGTTCAACTAGTTAGGGAATATGGTGGAGTTGATTGACGTGTGATGATTATTTGATTTTTAGTTGGATATTCACAGTCATATTATCATATATCAATTAGAAAAACCAAGTCTTTCTATGCTAAGAATGAGTTGCTGTCGTCATTGGACTTTTCAACGTTTCTTCTTCACATAGGTGGTTCCATTCTTGGAAAATTGTGGTAGTTTGAATGCTTCAAACAGCAAATTCATTGGAACGTATTAAATGGTTCATATTAATCGATATGTATATAGAGGATTTATGCTATGGACTCCAGGTAATTTAGAATTAAGATTTAGTTGATAAATTGACTGATTGAAGTGTTGGTAAATTGTTTGAGTTCTAGTTGGATTTTTACTGTCATACTATTTTGAAAAGGGAAATCACTTACTCCTTGTAGGATGACTGTCAACCTTAACTAGGTGATAACATCATGAAGGCTTTAGGCATTTAATTCATTACGTCATATGAAATAGGCTGAAGTTAGTTGATCTTGAGCCGACTACTAGTAGTTAGGGATCGAGAAGTAGTTAACCGGTTGATTGATTGATTCAAAGTTTTGGGTGATATTGATGACGTCAATTTATTCGATTCAAACACAATACACATAACATTTTTCCAAAGTGGGAATATAACTAAGTTAAAGACTTAGCGCTTCTAATATTCTGACATATGCTATTTTGAAACATCTCCTACTGTGTTCAATCATAATTTTAAGCTCTCAGCATTAGCATGTGTTGTAGTATGTTTTACAGGATTCTACAATCTATACCATATCGCTAGCCTTTCCTCTCTGAATTTGTACATCTTTTCACTACAATTAGTGTCTCCTTGAGATATAGCATCTTTTTTTTTTTCGATTGGTAAAAGTAATTTGATTCAACAAAATGCTCTTTCTGGTATAGAATTTTTGCAGCATTCTTCCCCTCATTTCACTTATCCTATGCTAATATGATAATCCAAAACTTGTTGCTTCTCATTTAACATTCTTTATGTTTTCTTGTAGGTAATCATGCTTAGAAGATTAGAGTTAGAATTTGTTTCCACGTGAAAAAAGGACTAGTTCTTTTTCCTTTCAAAGAGTAATTATTTATTGATCCCGCTTAGGGATTACACTGGGTATGTTGTTGTATGTGAAAGCTCATACTAGGGTATAGGAGAAGTAAAGAAGTTCTGCAAAAATACAGTTCTCTATGAACAACATCTAGTTAGTATAACTCTGTACTACCAGAGGTTTTATGTTCTCTCTTAAATTTACTAGAAACAACATATTTGCCTTAATTTGCATGAGAATACCTTTTTATCGGTAATTTGTATAACAGTATTATTCTCCCCTCGGAAACTCCATTCCTTTCTCTCCTATTACCCACATTTGGACAGACCAGGTTACATTCCTGCTCTCTATCTCCGTTTCCTTCTTTCTTCTAAAGCTCCAACTGAACATGAGATCTTTCCTTGTATATGCTATTGCCTACTGAACGCCAAAGGGATTCAATACTACGCACTTTAATCAACTTTCTAATGGGCAATGCGTGAGCAAGTGATCCACATCTGCGCAGGATTGTTTACACATATAGCACCAGCTATTTTGTCCTAACTTCCGTTTGCTCAAGTTCTCTGCAGTAAGGATGACTACCCTTGCTGTTGCTGGAAAACATACCTTCATCAGAGCTCTAGGAATCCAGATTGAGATCTGTGGGAGAATTATGTGTTTTCTTTTTAGTAGTCTGTCGTAGGACTACTTAAGTCCAAAATTCCTCATGCTTGCCCATTCCATAACTAAGAATTCTGACCTGTTGGTGTGATGTTTTGCTTTTAAATAGGTTGTGGAACTCACCTATCTCCCACAGCTGTAATGATCAAGTTGCTTAGTTTTGTTGTTACATTTCAGAGAGTAATATTGTTACTTTTTTGAGATCCGGAATGTATTAGGAAGACCTTGCTCAAAGTATCAACTCCGAAAAGCAAAAATGGAGGCATATTGGGAGTTAGGTGGTCTTAACTCTTAAGTGTCTATATGAAGCAAAATAACACCTTTAGATAGTTTTAAGAAAATATTGAGAAGCTTCTTTGATGGTTGAGTTCATTTATGTAATGTTTCCCGCTCTCATTTAAATCTAGTTTCCAAAAAAAAAAATCAAAATCCAAGCATCTTTTTTATGATGTTTTGGGTAGATGCTGGTGGTGGTGACTCCACTTAAAATGAGCTAAATTTATGTGAAAGGACAGCTCTCTTATGTCTTGAGAAAGTTGTTGTTGCATGATGTTGTTTGTTTTGCTTCTTTGTTATTTACTTGTTGAGATCTTGGCTTTCTGTAAGTAGCATGATGTTATCCTGAATTCCAAGAACACCTCTTATGACTCAGGCAACTAGGATGAGAGCTTCAGAAATGAAAAGTAGATGCTCAATGGCTTTGAACAGCGCAAACATTAGCAAAAATCGATACACTGATGTTCTGCCATGTATGCAGATCAGTTTCTATCAATTCTTCGATTGATGTTGAAGTTGTGTATTATAACCTGTGAATAATTATATCAAGCTTCATTCTTCTCAGTTGACAATAACAGGGTTGTTTTGGACCCACCAGCTAGAGGATATATAAATGCAAGCTTCATTAAGGTAGACTTCTACGTCCATTACTTGAAATTAGTTAAGCATGCTACTTGCTTTTGATACTCTCTTGGAAAATGTCAAGCTCTCTTCCACCAATCTGCTTCATGAGCATTATAATGCTCCTTTTTGCTGTAGATATCTGAAGACGTGTCTCAGTTTATTGCAACACAAGGTCCTCTACAACACACTTTTGAAGACTTCTGGGAAATGATAATCCAGCATCGCTGTCCTGTGATTGTGATGCTTACACAATTGTTTGACAACTACAAGGTATTCAACTGTTAAATTACGAGGTAAGCATTGTAATGTTAACAAGACAAGATATCTTGTTCTGTCATGTCACATGTGACAGAAAGAAAAAAATTGAGATTTTTTGTGACAAGGCTTCTGATCCAAAATTTGCTACCTAGGTAAAATTCTAACTTTTCTGCCTTTTTCATCTCTTGATTTTCATCCTCTGTTGTAATTAGATCTAGCATTTTTATACTTTCAGAAAGGTGCAACTGAACCTTTGATACTGTTTTTGCATTTTTTCTTGAGATACTTTGCCCCTTTACTATGTACTCTTCTATATTTTGAGTGGTGAGATAGGTTGGGGAAAAGAAACAGTAGAGAAAAAAAATATCTTAACCATCTCTTCTTGCTTGTCAATCTTTATTTCACACCTCTGTGTATAATTTCTTACACAGAAAGGAACAAACAGGTCGGTATTTTCAATATATATGCTACTACATCTTCTCGAAAAATAGAAAAAAGAAAAGTTTGGTGGTAAATGAATGCTCATTTTCTATCAGCATTCTTTTACATTAGGGGTGTCAAATGGGCGGGTTGGGTTGAAATTGGAAATATTACAATGGGCTGAATAGAAATCGGGTTGGGTCTTGACCCGCCCAAGTTTACGTTGGGCTCATATGGGTTGGGCTCAAATGGGTTGGGTCTTGACCCGCCCAATTTGACCCGATAAATCTCAATAATTTAACATATTATTATTTAACTTTTATAATCACAATTTGAATTTCTGCTCAAGATTTTTTTGTTAAAAAAGTAACAAATGGATAGATAATTCCTAAAAGATGTTGAATAGATAATAATTCATACCTTCAATACAGGAACATATCTTAATAAAAAAATTTAAACGGGTTGAAATTGGAGATTGAATTGGGCTCAATTGAGAATTCTCTTCAAATGGGTTAAGCTTGAATGGGTTGGGATTGAACCCATTTCAAATTATCTTGAGCCCAACCTTTAAAATTTTGTGCGGGTTGGCTGGGTTACCTATGTTTGATTTCATTTTTGACACCTATTTTACATCATCCTTTCTGGCCCTAATTCAAGCCGGAGGTTGTGGCTTTAAGGTCTGTTTAAATTTGATATAGTCATCACTGTCAATCTTTCTGCTAGTCATCACTCATCACTGGCAATCTTTCTGAGTAGGGAATGTTTCTCCTATAGACTATTTCAGAGCTTGGGCATATTTTGATGGAGTTGGTATAAGTAGACTTCTAGTGTGGTGCTTAAAGATATTATATGATCACTAGCTTGTGACTTCGTGATGAATATAAAGCTTGTAGGTGAATAACTTTTGCAGAAAATCAGCTTCTGTTGGGGAAGGTTCCAATTGAAGTTTATATTCCATCACGGGAAAAAGCCCTAGTTTTCCCTTCATATAAGCTTGGTAGATCATTTATCTATTTTTGTGGTCTTTCTCTAGTTTCAAAACTGTTATACTTGGATTTTGTTGGTTATTTAAACTGCAGAAGGATTAGCAAAGTCTAATGCAAAGGCCTGGCGGCTATTCTAGGATTGGAATTTGAGCTTAATAAGTTCTTCTTTCCCTTCTATCTTCCTAATACCCGATTAGCTGAGAAACAATTTCCTGGGCCAAATGGAAAAAAGGAAAATAAGAGACCTTGTTTCATGACCTTTATTCTGGATTATATTCAACTCTTCACACAAAGAGAGAGGCTACTAGTTTCCTTTCAATCACCCTGTATCACCTATTAACCTCTGAATGAATTTAAGCATTTATCTTAGTTGGTTTTTACTTCATTTGTAAGTGATTAAGCTGGTGATTGCGTCATTTTGACTATTTCATCTTTTCATCTTTATGAAAAATGCAATGCAGATTGTCAAGTGTGGGGATTATTTTCAGGCAGATGGTGGTCCCAGAAGATTTGGCAATATATGTATTGTTACGAAGTGGATAAAGACGACTCAGACTTCATTGATTTTGCGATGTCTGGAGGTGAACTATATTGAGGTTAGTAAATTTTTTTCTGTCCGTGTTATACACAAGGAGAAGAGCATGAAGAATCTTATTATGTTGGACATGTATATGGAACCGCTGGAAACTATTTACCTGTTTCATTTGATGGAGAGTGAGAGTTGCTGATGTACATATTTTGATTTCTGCAGCATTTTACATATCCAGACTGATACACTTCTTCTCCAGTAAATATGAGTCCTTGGCTTTAGAATACCCTTCTTTAAAGCTCTATGATCACGCATTGCTCTTTTTGCATAAGTTCTCCCAAAATTTGGGTTTTTTTTTATGAGAGCAAGAATAAAAAGGAATTGCAACATATGGGGAAAATTTTGCAATACTATATGATGATTTCCATCAGTATTGCCTTCAACAATCAATTGGATAGTATGGTGTCATTTTTGCTCGTTGTCTCTTCTTGTATATAATCGATGCAATTCCATCTCTAGCTTCAATTAGTGGTTTTAAACCAAACAGGAAGACTGATTGACTTGTAAACCATCCAGATATGGCTTTGGAAACCTGCCTTTTGTCTATTTCAAGGCCTTGTCTTAGTTGCAGCAAGACTTTTTAAGTAACACAGATAATGATTATGAATGCTAATTAAGTGGAAAAGATTCTTTGGTGGTTCCTCACCCCTCCTTCACTATTTTCAAAGTCCCATTTTGAAGCACTTTATTCTACTGTGGAATCGTTTCTGCCTGCATTCTTGTTCCTTCTTTTACAATCTTTGATGCTTGGATAGACTGTTTAAGATACATGACAACACCTTTTTCCCTCTTCCTTACATGAGGACAACTTGAATGCTAGTTCTATTTGTTTTATCTTGTGTTTAAATTACTTTTATAGCTGTGTACACACCATCCTCGCCAGATCTCACTTGTGGGATTACACTGGGTATGTTGTTATAGCAGATCTAGTTTTTCTCTTGCCATGTGTAGTAGGTGGCAATAGACGACTTGTTTGCGTGAGAAGGCTCACAATTGGTACTACAGTCATTGCGGCAATCCCTTAGCGATCTCTTTCAAGTAATTCTGGCATTTTTATTGTTGGGAGTAAAGAAAAACTTCAGTCTTTCACTTTGCAGTATAAATGCTTTATTTCGTATTATGATATCAGAAATGTGGTTTCTTTAACCTTGTACTTTTAGTGGAATTACCTTTTGGCAATCTTGTAAGTAGTTCATACAATGGTATGTAATTGTGGCCCAATTCTCCCACTCACTTGTCATCCTTACATATAGTTAACACTAATTTCTTGCCCATATTATGAGGGAAATGGCAATAAATGTGTGATCTTTTCTCCTTGCTATTTGCCAGTCAACAGAACCACCTTTGTGTGTTTTACACATTCAATATCCCGACTGGCCTGACCATGGAGTTCCAAAGGACACTCTTGCTGTTCGTGAAATACTGA</genome_strand>
        <mrna_strand>GTGAAGTGAACATCCTACCACGGGGTGCGGACTGTCCATTCGGAATCGGAGGCAGATATCAGCGATGGCCACCGCCGGTAAACTCGTGTCGTCGTCGTCGTCGTCACCCAAGCCTTTCGATTTCTCCGACGATTCAGTTCCTAAGAGAGTCGTTCTGTCGAGTGATCAGCAGCGTTATTGCTTGGAAGTACTCAAAGTCTTCAAGGACAAGAGGTTTTCTGCTCCCGAAAAAATCCGCCAAGAGTTCATGACGTTGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTAGGATGAGAGCTTCAGAAATGAAAAGTAGATGCTCAATGGCTTTGAACAGCGCAAACATTAGCAAAAATCGATACACTGATGTTCTGCCAT............................................................................................TTGACAATAACAGGGTTGTTTTGGACCCACCAGCTAGAGGATATATAAATGCAAGCTTCATTAAG.................................................................................................................................ATATCTGAAGACGTGTCTCAGTTTATTGCAACACAAGGTCCTCTACAACACACTTTTGAAGACTTCTGGGAAATGATAATCCAGCATCGCTGTCCTGTGATTGTGATGCTTACACAATTGTTTGACAACTACAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTCAAGTGTGGGGATTATTTTCAGGCAGATGGTGGTCCCAGAAGATTTGGCAATATATGTATTGTTACGAAGTGGATAAAGACGACTCAGACTTCATTGATTTTGCGATGTCTGGAGGTGAACTATATTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACAGAACCACCTTTGTGTGGTTTACACATTCAATATCCCGACTGGCCTGACCATGGAGTTCC-AAGGACACTCTTGCTGTTCGTG-AATACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554350" ref_strand="+" ref_description="SGN-E554350 [cTSC-4-A17]">
      <seq>tgaacatcctaccacggggtgcggactgtccattcggaatcggaggcagatatcagcgatggccaccgccggtaaactcgtgtcgtcgtcgtcgtcgtcacccaagcctttcgatttctccgacgattcagttcctaagagagtcgttctgtcgagtgatcagcagcgttattgcttggaagtactcaaagtcttcaaggacaagaggttttctgctcccgaaaaaatccgccaagagttcatgacgttgcaggcaactaggatgagagcttcagaaatgaaaagtagatgctcaatggctttgaacagcgcaaacattagcaaaaatcgatacactgatgttctgccatttgacaataacagggttgttttggacccaccagctagaggatatataaatgcaagcttcattaagatatctgaagacgtgtctcagtttattgcaacacaaggtcctctacaacacacttttgaagacttctgggaaatgataatccagcatcgctgtcctgtgattgtgatgcttacacaattgtttgacaactacaagattgtcaagtgtggggattattttcaggcagatggtggtcccagaagatttggcaatatatgtattgttacgaagtggataaagacgactcagacttcattgattttgcgatgtctggaggtgaactatattgagtcaacagaaccacctttgtgtgttttacacattcaatatcccgactggcctgaccatggagttccaaaggacactcttgctgttcgtgaaatactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90035" stop="82380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89735" g_stop="89483" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89482" i_stop="86606" i_length="2877">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.637" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86605" g_stop="86509" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="350" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86508" i_stop="86417" i_length="92">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86416" g_stop="86352" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="415" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86351" i_stop="86223" i_length="129">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86222" g_stop="86088" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="550" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86087" i_stop="84233" i_length="1855">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84232" g_stop="84098" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="685" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84097" i_stop="82776" i_length="1322">
            <donor d_prob="0.857" d_score="1.00"/>
            <acceptor a_prob="0.116" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82775" g_stop="82680" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="686" r_stop="781" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E554350" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89735" e_stop="89483"/>
          <exon e_start="86605" e_stop="86509"/>
          <exon e_start="86416" e_stop="86352"/>
          <exon e_start="86222" e_stop="86088"/>
          <exon e_start="84232" e_stop="84098"/>
          <exon e_start="82775" e_stop="82680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACATCCTACCACGGGGTGCGGACTGTCCATTCGGAATCGGAGGCAGATATCAGCGATGGCCACCGCCGGTAAACTCGTGTCGTCGTCGTCGTCGTCACCCAAGCCTTTCGATTTCTCCGACGATTCAGTTCCTAAGAGAGTCGTTCTGTCGAGTGATCAGCAGCGTTATTGCTTGGAAGTACTCAAAGTCTTCAAGGACAAGAGGTTTTCTGCTCCCGAAAAAATCCGCCAAGAGTTCATGACGTTGCAGGTCCGTTTGCATTATACTCTCTTTCTTTCTCAATTTTATTGTTATTTAATGTTGTGCTTTTTCATAAAAGAGGAGGGTATTTATTCAATTGGTCAATTTTTTTGAAGAATATTTTCTCAAGTTACTCGAAGAATGATGAAAATAACTTCCAAAACAGGTTCTACAAGTGATGTGTACCTCTGTCTTTGAAGAAACAGAGGAGGGGGGCCAGTTTAGGAGTCTCATTTTTTTGATTCATTCATTCATAAGAGTGTATGATAAGAAAAAGTCCTCCAACACACCTCATCTTTACCTCCGTTATTTGTCTATATTATATACAAATGCTTTTAGTATAGTATATTTTGCTAAGTACTATACACGAGAAAATAAGTTACAAATCCACTTATTTCCTGGAAAACTATTTCCTTCATACAGAATACACCCGAAATGTTGAATTTGGGATATATGAGATGGATCCAAACAGAGTGAGATGGATATAAAGTATTCTTAGTCCATGTTCAACTAGTTAGGGAATATGGTGGAGTTGATTGACGTGTGATGATTATTTGATTTTTAGTTGGATATTCACAGTCATATTATCATATATCAATTAGAAAAACCAAGTCTTTCTATGCTAAGAATGAGTTGCTGTCGTCATTGGACTTTTCAACGTTTCTTCTTCACATAGGTGGTTCCATTCTTGGAAAATTGTGGTAGTTTGAATGCTTCAAACAGCAAATTCATTGGAACGTATTAAATGGTTCATATTAATCGATATGTATATAGAGGATTTATGCTATGGACTCCAGGTAATTTAGAATTAAGATTTAGTTGATAAATTGACTGATTGAAGTGTTGGTAAATTGTTTGAGTTCTAGTTGGATTTTTACTGTCATACTATTTTGAAAAGGGAAATCACTTACTCCTTGTAGGATGACTGTCAACCTTAACTAGGTGATAACATCATGAAGGCTTTAGGCATTTAATTCATTACGTCATATGAAATAGGCTGAAGTTAGTTGATCTTGAGCCGACTACTAGTAGTTAGGGATCGAGAAGTAGTTAACCGGTTGATTGATTGATTCAAAGTTTTGGGTGATATTGATGACGTCAATTTATTCGATTCAAACACAATACACATAACATTTTTCCAAAGTGGGAATATAACTAAGTTAAAGACTTAGCGCTTCTAATATTCTGACATATGCTATTTTGAAACATCTCCTACTGTGTTCAATCATAATTTTAAGCTCTCAGCATTAGCATGTGTTGTAGTATGTTTTACAGGATTCTACAATCTATACCATATCGCTAGCCTTTCCTCTCTGAATTTGTACATCTTTTCACTACAATTAGTGTCTCCTTGAGATATAGCATCTTTTTTTTTTTCGATTGGTAAAAGTAATTTGATTCAACAAAATGCTCTTTCTGGTATAGAATTTTTGCAGCATTCTTCCCCTCATTTCACTTATCCTATGCTAATATGATAATCCAAAACTTGTTGCTTCTCATTTAACATTCTTTATGTTTTCTTGTAGGTAATCATGCTTAGAAGATTAGAGTTAGAATTTGTTTCCACGTGAAAAAAGGACTAGTTCTTTTTCCTTTCAAAGAGTAATTATTTATTGATCCCGCTTAGGGATTACACTGGGTATGTTGTTGTATGTGAAAGCTCATACTAGGGTATAGGAGAAGTAAAGAAGTTCTGCAAAAATACAGTTCTCTATGAACAACATCTAGTTAGTATAACTCTGTACTACCAGAGGTTTTATGTTCTCTCTTAAATTTACTAGAAACAACATATTTGCCTTAATTTGCATGAGAATACCTTTTTATCGGTAATTTGTATAACAGTATTATTCTCCCCTCGGAAACTCCATTCCTTTCTCTCCTATTACCCACATTTGGACAGACCAGGTTACATTCCTGCTCTCTATCTCCGTTTCCTTCTTTCTTCTAAAGCTCCAACTGAACATGAGATCTTTCCTTGTATATGCTATTGCCTACTGAACGCCAAAGGGATTCAATACTACGCACTTTAATCAACTTTCTAATGGGCAATGCGTGAGCAAGTGATCCACATCTGCGCAGGATTGTTTACACATATAGCACCAGCTATTTTGTCCTAACTTCCGTTTGCTCAAGTTCTCTGCAGTAAGGATGACTACCCTTGCTGTTGCTGGAAAACATACCTTCATCAGAGCTCTAGGAATCCAGATTGAGATCTGTGGGAGAATTATGTGTTTTCTTTTTAGTAGTCTGTCGTAGGACTACTTAAGTCCAAAATTCCTCATGCTTGCCCATTCCATAACTAAGAATTCTGACCTGTTGGTGTGATGTTTTGCTTTTAAATAGGTTGTGGAACTCACCTATCTCCCACAGCTGTAATGATCAAGTTGCTTAGTTTTGTTGTTACATTTCAGAGAGTAATATTGTTACTTTTTTGAGATCCGGAATGTATTAGGAAGACCTTGCTCAAAGTATCAACTCCGAAAAGCAAAAATGGAGGCATATTGGGAGTTAGGTGGTCTTAACTCTTAAGTGTCTATATGAAGCAAAATAACACCTTTAGATAGTTTTAAGAAAATATTGAGAAGCTTCTTTGATGGTTGAGTTCATTTATGTAATGTTTCCCGCTCTCATTTAAATCTAGTTTCCAAAAAAAAAAATCAAAATCCAAGCATCTTTTTTATGATGTTTTGGGTAGATGCTGGTGGTGGTGACTCCACTTAAAATGAGCTAAATTTATGTGAAAGGACAGCTCTCTTATGTCTTGAGAAAGTTGTTGTTGCATGATGTTGTTTGTTTTGCTTCTTTGTTATTTACTTGTTGAGATCTTGGCTTTCTGTAAGTAGCATGATGTTATCCTGAATTCCAAGAACACCTCTTATGACTCAGGCAACTAGGATGAGAGCTTCAGAAATGAAAAGTAGATGCTCAATGGCTTTGAACAGCGCAAACATTAGCAAAAATCGATACACTGATGTTCTGCCATGTATGCAGATCAGTTTCTATCAATTCTTCGATTGATGTTGAAGTTGTGTATTATAACCTGTGAATAATTATATCAAGCTTCATTCTTCTCAGTTGACAATAACAGGGTTGTTTTGGACCCACCAGCTAGAGGATATATAAATGCAAGCTTCATTAAGGTAGACTTCTACGTCCATTACTTGAAATTAGTTAAGCATGCTACTTGCTTTTGATACTCTCTTGGAAAATGTCAAGCTCTCTTCCACCAATCTGCTTCATGAGCATTATAATGCTCCTTTTTGCTGTAGATATCTGAAGACGTGTCTCAGTTTATTGCAACACAAGGTCCTCTACAACACACTTTTGAAGACTTCTGGGAAATGATAATCCAGCATCGCTGTCCTGTGATTGTGATGCTTACACAATTGTTTGACAACTACAAGGTATTCAACTGTTAAATTACGAGGTAAGCATTGTAATGTTAACAAGACAAGATATCTTGTTCTGTCATGTCACATGTGACAGAAAGAAAAAAATTGAGATTTTTTGTGACAAGGCTTCTGATCCAAAATTTGCTACCTAGGTAAAATTCTAACTTTTCTGCCTTTTTCATCTCTTGATTTTCATCCTCTGTTGTAATTAGATCTAGCATTTTTATACTTTCAGAAAGGTGCAACTGAACCTTTGATACTGTTTTTGCATTTTTTCTTGAGATACTTTGCCCCTTTACTATGTACTCTTCTATATTTTGAGTGGTGAGATAGGTTGGGGAAAAGAAACAGTAGAGAAAAAAAATATCTTAACCATCTCTTCTTGCTTGTCAATCTTTATTTCACACCTCTGTGTATAATTTCTTACACAGAAAGGAACAAACAGGTCGGTATTTTCAATATATATGCTACTACATCTTCTCGAAAAATAGAAAAAAGAAAAGTTTGGTGGTAAATGAATGCTCATTTTCTATCAGCATTCTTTTACATTAGGGGTGTCAAATGGGCGGGTTGGGTTGAAATTGGAAATATTACAATGGGCTGAATAGAAATCGGGTTGGGTCTTGACCCGCCCAAGTTTACGTTGGGCTCATATGGGTTGGGCTCAAATGGGTTGGGTCTTGACCCGCCCAATTTGACCCGATAAATCTCAATAATTTAACATATTATTATTTAACTTTTATAATCACAATTTGAATTTCTGCTCAAGATTTTTTTGTTAAAAAAGTAACAAATGGATAGATAATTCCTAAAAGATGTTGAATAGATAATAATTCATACCTTCAATACAGGAACATATCTTAATAAAAAAATTTAAACGGGTTGAAATTGGAGATTGAATTGGGCTCAATTGAGAATTCTCTTCAAATGGGTTAAGCTTGAATGGGTTGGGATTGAACCCATTTCAAATTATCTTGAGCCCAACCTTTAAAATTTTGTGCGGGTTGGCTGGGTTACCTATGTTTGATTTCATTTTTGACACCTATTTTACATCATCCTTTCTGGCCCTAATTCAAGCCGGAGGTTGTGGCTTTAAGGTCTGTTTAAATTTGATATAGTCATCACTGTCAATCTTTCTGCTAGTCATCACTCATCACTGGCAATCTTTCTGAGTAGGGAATGTTTCTCCTATAGACTATTTCAGAGCTTGGGCATATTTTGATGGAGTTGGTATAAGTAGACTTCTAGTGTGGTGCTTAAAGATATTATATGATCACTAGCTTGTGACTTCGTGATGAATATAAAGCTTGTAGGTGAATAACTTTTGCAGAAAATCAGCTTCTGTTGGGGAAGGTTCCAATTGAAGTTTATATTCCATCACGGGAAAAAGCCCTAGTTTTCCCTTCATATAAGCTTGGTAGATCATTTATCTATTTTTGTGGTCTTTCTCTAGTTTCAAAACTGTTATACTTGGATTTTGTTGGTTATTTAAACTGCAGAAGGATTAGCAAAGTCTAATGCAAAGGCCTGGCGGCTATTCTAGGATTGGAATTTGAGCTTAATAAGTTCTTCTTTCCCTTCTATCTTCCTAATACCCGATTAGCTGAGAAACAATTTCCTGGGCCAAATGGAAAAAAGGAAAATAAGAGACCTTGTTTCATGACCTTTATTCTGGATTATATTCAACTCTTCACACAAAGAGAGAGGCTACTAGTTTCCTTTCAATCACCCTGTATCACCTATTAACCTCTGAATGAATTTAAGCATTTATCTTAGTTGGTTTTTACTTCATTTGTAAGTGATTAAGCTGGTGATTGCGTCATTTTGACTATTTCATCTTTTCATCTTTATGAAAAATGCAATGCAGATTGTCAAGTGTGGGGATTATTTTCAGGCAGATGGTGGTCCCAGAAGATTTGGCAATATATGTATTGTTACGAAGTGGATAAAGACGACTCAGACTTCATTGATTTTGCGATGTCTGGAGGTGAACTATATTGAGGTTAGTAAATTTTTTTCTGTCCGTGTTATACACAAGGAGAAGAGCATGAAGAATCTTATTATGTTGGACATGTATATGGAACCGCTGGAAACTATTTACCTGTTTCATTTGATGGAGAGTGAGAGTTGCTGATGTACATATTTTGATTTCTGCAGCATTTTACATATCCAGACTGATACACTTCTTCTCCAGTAAATATGAGTCCTTGGCTTTAGAATACCCTTCTTTAAAGCTCTATGATCACGCATTGCTCTTTTTGCATAAGTTCTCCCAAAATTTGGGTTTTTTTTTATGAGAGCAAGAATAAAAAGGAATTGCAACATATGGGGAAAATTTTGCAATACTATATGATGATTTCCATCAGTATTGCCTTCAACAATCAATTGGATAGTATGGTGTCATTTTTGCTCGTTGTCTCTTCTTGTATATAATCGATGCAATTCCATCTCTAGCTTCAATTAGTGGTTTTAAACCAAACAGGAAGACTGATTGACTTGTAAACCATCCAGATATGGCTTTGGAAACCTGCCTTTTGTCTATTTCAAGGCCTTGTCTTAGTTGCAGCAAGACTTTTTAAGTAACACAGATAATGATTATGAATGCTAATTAAGTGGAAAAGATTCTTTGGTGGTTCCTCACCCCTCCTTCACTATTTTCAAAGTCCCATTTTGAAGCACTTTATTCTACTGTGGAATCGTTTCTGCCTGCATTCTTGTTCCTTCTTTTACAATCTTTGATGCTTGGATAGACTGTTTAAGATACATGACAACACCTTTTTCCCTCTTCCTTACATGAGGACAACTTGAATGCTAGTTCTATTTGTTTTATCTTGTGTTTAAATTACTTTTATAGCTGTGTACACACCATCCTCGCCAGATCTCACTTGTGGGATTACACTGGGTATGTTGTTATAGCAGATCTAGTTTTTCTCTTGCCATGTGTAGTAGGTGGCAATAGACGACTTGTTTGCGTGAGAAGGCTCACAATTGGTACTACAGTCATTGCGGCAATCCCTTAGCGATCTCTTTCAAGTAATTCTGGCATTTTTATTGTTGGGAGTAAAGAAAAACTTCAGTCTTTCACTTTGCAGTATAAATGCTTTATTTCGTATTATGATATCAGAAATGTGGTTTCTTTAACCTTGTACTTTTAGTGGAATTACCTTTTGGCAATCTTGTAAGTAGTTCATACAATGGTATGTAATTGTGGCCCAATTCTCCCACTCACTTGTCATCCTTACATATAGTTAACACTAATTTCTTGCCCATATTATGAGGGAAATGGCAATAAATGTGTGATCTTTTCTCCTTGCTATTTGCCAGTCAACAGAACCACCTTTGTGTGTTTTACACATTCAATATCCCGACTGGCCTGACCATGGAGTTCCAAAGGACACTCTTGCTGTTCGTGAAATACTG</genome_strand>
        <mrna_strand>TGAACATCCTACCACGGGGTGCGGACTGTCCATTCGGAATCGGAGGCAGATATCAGCGATGGCCACCGCCGGTAAACTCGTGTCGTCGTCGTCGTCGTCACCCAAGCCTTTCGATTTCTCCGACGATTCAGTTCCTAAGAGAGTCGTTCTGTCGAGTGATCAGCAGCGTTATTGCTTGGAAGTACTCAAAGTCTTCAAGGACAAGAGGTTTTCTGCTCCCGAAAAAATCCGCCAAGAGTTCATGACGTTGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTAGGATGAGAGCTTCAGAAATGAAAAGTAGATGCTCAATGGCTTTGAACAGCGCAAACATTAGCAAAAATCGATACACTGATGTTCTGCCAT............................................................................................TTGACAATAACAGGGTTGTTTTGGACCCACCAGCTAGAGGATATATAAATGCAAGCTTCATTAAG.................................................................................................................................ATATCTGAAGACGTGTCTCAGTTTATTGCAACACAAGGTCCTCTACAACACACTTTTGAAGACTTCTGGGAAATGATAATCCAGCATCGCTGTCCTGTGATTGTGATGCTTACACAATTGTTTGACAACTACAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTCAAGTGTGGGGATTATTTTCAGGCAGATGGTGGTCCCAGAAGATTTGGCAATATATGTATTGTTACGAAGTGGATAAAGACGACTCAGACTTCATTGATTTTGCGATGTCTGGAGGTGAACTATATTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACAGAACCACCTTTGTGTGTTTTACACATTCAATATCCCGACTGGCCTGACCATGGAGTTCCAAAGGACACTCTTGCTGTTCGTGAAATACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699967" ref_strand="+" ref_description="SGN-E699967 [FA11CH10]">
      <seq>ggcctgttaattcggaatcggaggcagatatcagcgatggccaccgccggtaaactcgtgtcgtcgtcgtcgtcgtcacccaagcctttcgatttctccgacgattcagttcctaagagagtcgttctgtcgagtgatcagcagcgttattgcttggaagtactcaaagtcttcaaggacaagaggttttctgctcccgaaaaaatccgccaagagttcatgacgttgcaggcaactaggatgagagcttcagaaatgaaaagtagatgctcaatggctttgaacagcgcaaacattagcaaaaatcgatacactgatgttctgccatttgacaataacagggttgttttggacccaccagctagaggatatataaatgcaagcttcattaagatatctgaagacgtgtctcagtttattgcaacacaaggtcctctacaacacacttttgaagacttctgggaaatgataatccagcatcgctgtcctgtgattgtgatgcttacacaattgtttgacaactacaagattgtcaagtgtggggattattttcaggcagatggtggtcccagaagatttggcaatatatgtattgttacgaagtggataaagacgactcagacttcattgattttgcgatgtctggaggtgaactatattgagtcaacagaaccacctttgtgtgttttacacattcaatatcccgactggcctgaccatggagttcccaaggacactcttgctgttcgtgaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90013" stop="82383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89713" g_stop="89483" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89482" i_stop="86606" i_length="2877">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.637" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86605" g_stop="86509" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="328" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86508" i_stop="86417" i_length="92">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86416" g_stop="86352" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="393" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86351" i_stop="86223" i_length="129">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86222" g_stop="86088" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="528" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86087" i_stop="84233" i_length="1855">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84232" g_stop="84098" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="663" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84097" i_stop="82776" i_length="1322">
            <donor d_prob="0.857" d_score="1.00"/>
            <acceptor a_prob="0.116" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82775" g_stop="82683" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="756" r_length="93" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E699967" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89713" e_stop="89483"/>
          <exon e_start="86605" e_stop="86509"/>
          <exon e_start="86416" e_stop="86352"/>
          <exon e_start="86222" e_stop="86088"/>
          <exon e_start="84232" e_stop="84098"/>
          <exon e_start="82775" e_stop="82683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACTGTCCATTCGGAATCGGAGGCAGATATCAGCGATGGCCACCGCCGGTAAACTCGTGTCGTCGTCGTCGTCGTCACCCAAGCCTTTCGATTTCTCCGACGATTCAGTTCCTAAGAGAGTCGTTCTGTCGAGTGATCAGCAGCGTTATTGCTTGGAAGTACTCAAAGTCTTCAAGGACAAGAGGTTTTCTGCTCCCGAAAAAATCCGCCAAGAGTTCATGACGTTGCAGGTCCGTTTGCATTATACTCTCTTTCTTTCTCAATTTTATTGTTATTTAATGTTGTGCTTTTTCATAAAAGAGGAGGGTATTTATTCAATTGGTCAATTTTTTTGAAGAATATTTTCTCAAGTTACTCGAAGAATGATGAAAATAACTTCCAAAACAGGTTCTACAAGTGATGTGTACCTCTGTCTTTGAAGAAACAGAGGAGGGGGGCCAGTTTAGGAGTCTCATTTTTTTGATTCATTCATTCATAAGAGTGTATGATAAGAAAAAGTCCTCCAACACACCTCATCTTTACCTCCGTTATTTGTCTATATTATATACAAATGCTTTTAGTATAGTATATTTTGCTAAGTACTATACACGAGAAAATAAGTTACAAATCCACTTATTTCCTGGAAAACTATTTCCTTCATACAGAATACACCCGAAATGTTGAATTTGGGATATATGAGATGGATCCAAACAGAGTGAGATGGATATAAAGTATTCTTAGTCCATGTTCAACTAGTTAGGGAATATGGTGGAGTTGATTGACGTGTGATGATTATTTGATTTTTAGTTGGATATTCACAGTCATATTATCATATATCAATTAGAAAAACCAAGTCTTTCTATGCTAAGAATGAGTTGCTGTCGTCATTGGACTTTTCAACGTTTCTTCTTCACATAGGTGGTTCCATTCTTGGAAAATTGTGGTAGTTTGAATGCTTCAAACAGCAAATTCATTGGAACGTATTAAATGGTTCATATTAATCGATATGTATATAGAGGATTTATGCTATGGACTCCAGGTAATTTAGAATTAAGATTTAGTTGATAAATTGACTGATTGAAGTGTTGGTAAATTGTTTGAGTTCTAGTTGGATTTTTACTGTCATACTATTTTGAAAAGGGAAATCACTTACTCCTTGTAGGATGACTGTCAACCTTAACTAGGTGATAACATCATGAAGGCTTTAGGCATTTAATTCATTACGTCATATGAAATAGGCTGAAGTTAGTTGATCTTGAGCCGACTACTAGTAGTTAGGGATCGAGAAGTAGTTAACCGGTTGATTGATTGATTCAAAGTTTTGGGTGATATTGATGACGTCAATTTATTCGATTCAAACACAATACACATAACATTTTTCCAAAGTGGGAATATAACTAAGTTAAAGACTTAGCGCTTCTAATATTCTGACATATGCTATTTTGAAACATCTCCTACTGTGTTCAATCATAATTTTAAGCTCTCAGCATTAGCATGTGTTGTAGTATGTTTTACAGGATTCTACAATCTATACCATATCGCTAGCCTTTCCTCTCTGAATTTGTACATCTTTTCACTACAATTAGTGTCTCCTTGAGATATAGCATCTTTTTTTTTTTCGATTGGTAAAAGTAATTTGATTCAACAAAATGCTCTTTCTGGTATAGAATTTTTGCAGCATTCTTCCCCTCATTTCACTTATCCTATGCTAATATGATAATCCAAAACTTGTTGCTTCTCATTTAACATTCTTTATGTTTTCTTGTAGGTAATCATGCTTAGAAGATTAGAGTTAGAATTTGTTTCCACGTGAAAAAAGGACTAGTTCTTTTTCCTTTCAAAGAGTAATTATTTATTGATCCCGCTTAGGGATTACACTGGGTATGTTGTTGTATGTGAAAGCTCATACTAGGGTATAGGAGAAGTAAAGAAGTTCTGCAAAAATACAGTTCTCTATGAACAACATCTAGTTAGTATAACTCTGTACTACCAGAGGTTTTATGTTCTCTCTTAAATTTACTAGAAACAACATATTTGCCTTAATTTGCATGAGAATACCTTTTTATCGGTAATTTGTATAACAGTATTATTCTCCCCTCGGAAACTCCATTCCTTTCTCTCCTATTACCCACATTTGGACAGACCAGGTTACATTCCTGCTCTCTATCTCCGTTTCCTTCTTTCTTCTAAAGCTCCAACTGAACATGAGATCTTTCCTTGTATATGCTATTGCCTACTGAACGCCAAAGGGATTCAATACTACGCACTTTAATCAACTTTCTAATGGGCAATGCGTGAGCAAGTGATCCACATCTGCGCAGGATTGTTTACACATATAGCACCAGCTATTTTGTCCTAACTTCCGTTTGCTCAAGTTCTCTGCAGTAAGGATGACTACCCTTGCTGTTGCTGGAAAACATACCTTCATCAGAGCTCTAGGAATCCAGATTGAGATCTGTGGGAGAATTATGTGTTTTCTTTTTAGTAGTCTGTCGTAGGACTACTTAAGTCCAAAATTCCTCATGCTTGCCCATTCCATAACTAAGAATTCTGACCTGTTGGTGTGATGTTTTGCTTTTAAATAGGTTGTGGAACTCACCTATCTCCCACAGCTGTAATGATCAAGTTGCTTAGTTTTGTTGTTACATTTCAGAGAGTAATATTGTTACTTTTTTGAGATCCGGAATGTATTAGGAAGACCTTGCTCAAAGTATCAACTCCGAAAAGCAAAAATGGAGGCATATTGGGAGTTAGGTGGTCTTAACTCTTAAGTGTCTATATGAAGCAAAATAACACCTTTAGATAGTTTTAAGAAAATATTGAGAAGCTTCTTTGATGGTTGAGTTCATTTATGTAATGTTTCCCGCTCTCATTTAAATCTAGTTTCCAAAAAAAAAAATCAAAATCCAAGCATCTTTTTTATGATGTTTTGGGTAGATGCTGGTGGTGGTGACTCCACTTAAAATGAGCTAAATTTATGTGAAAGGACAGCTCTCTTATGTCTTGAGAAAGTTGTTGTTGCATGATGTTGTTTGTTTTGCTTCTTTGTTATTTACTTGTTGAGATCTTGGCTTTCTGTAAGTAGCATGATGTTATCCTGAATTCCAAGAACACCTCTTATGACTCAGGCAACTAGGATGAGAGCTTCAGAAATGAAAAGTAGATGCTCAATGGCTTTGAACAGCGCAAACATTAGCAAAAATCGATACACTGATGTTCTGCCATGTATGCAGATCAGTTTCTATCAATTCTTCGATTGATGTTGAAGTTGTGTATTATAACCTGTGAATAATTATATCAAGCTTCATTCTTCTCAGTTGACAATAACAGGGTTGTTTTGGACCCACCAGCTAGAGGATATATAAATGCAAGCTTCATTAAGGTAGACTTCTACGTCCATTACTTGAAATTAGTTAAGCATGCTACTTGCTTTTGATACTCTCTTGGAAAATGTCAAGCTCTCTTCCACCAATCTGCTTCATGAGCATTATAATGCTCCTTTTTGCTGTAGATATCTGAAGACGTGTCTCAGTTTATTGCAACACAAGGTCCTCTACAACACACTTTTGAAGACTTCTGGGAAATGATAATCCAGCATCGCTGTCCTGTGATTGTGATGCTTACACAATTGTTTGACAACTACAAGGTATTCAACTGTTAAATTACGAGGTAAGCATTGTAATGTTAACAAGACAAGATATCTTGTTCTGTCATGTCACATGTGACAGAAAGAAAAAAATTGAGATTTTTTGTGACAAGGCTTCTGATCCAAAATTTGCTACCTAGGTAAAATTCTAACTTTTCTGCCTTTTTCATCTCTTGATTTTCATCCTCTGTTGTAATTAGATCTAGCATTTTTATACTTTCAGAAAGGTGCAACTGAACCTTTGATACTGTTTTTGCATTTTTTCTTGAGATACTTTGCCCCTTTACTATGTACTCTTCTATATTTTGAGTGGTGAGATAGGTTGGGGAAAAGAAACAGTAGAGAAAAAAAATATCTTAACCATCTCTTCTTGCTTGTCAATCTTTATTTCACACCTCTGTGTATAATTTCTTACACAGAAAGGAACAAACAGGTCGGTATTTTCAATATATATGCTACTACATCTTCTCGAAAAATAGAAAAAAGAAAAGTTTGGTGGTAAATGAATGCTCATTTTCTATCAGCATTCTTTTACATTAGGGGTGTCAAATGGGCGGGTTGGGTTGAAATTGGAAATATTACAATGGGCTGAATAGAAATCGGGTTGGGTCTTGACCCGCCCAAGTTTACGTTGGGCTCATATGGGTTGGGCTCAAATGGGTTGGGTCTTGACCCGCCCAATTTGACCCGATAAATCTCAATAATTTAACATATTATTATTTAACTTTTATAATCACAATTTGAATTTCTGCTCAAGATTTTTTTGTTAAAAAAGTAACAAATGGATAGATAATTCCTAAAAGATGTTGAATAGATAATAATTCATACCTTCAATACAGGAACATATCTTAATAAAAAAATTTAAACGGGTTGAAATTGGAGATTGAATTGGGCTCAATTGAGAATTCTCTTCAAATGGGTTAAGCTTGAATGGGTTGGGATTGAACCCATTTCAAATTATCTTGAGCCCAACCTTTAAAATTTTGTGCGGGTTGGCTGGGTTACCTATGTTTGATTTCATTTTTGACACCTATTTTACATCATCCTTTCTGGCCCTAATTCAAGCCGGAGGTTGTGGCTTTAAGGTCTGTTTAAATTTGATATAGTCATCACTGTCAATCTTTCTGCTAGTCATCACTCATCACTGGCAATCTTTCTGAGTAGGGAATGTTTCTCCTATAGACTATTTCAGAGCTTGGGCATATTTTGATGGAGTTGGTATAAGTAGACTTCTAGTGTGGTGCTTAAAGATATTATATGATCACTAGCTTGTGACTTCGTGATGAATATAAAGCTTGTAGGTGAATAACTTTTGCAGAAAATCAGCTTCTGTTGGGGAAGGTTCCAATTGAAGTTTATATTCCATCACGGGAAAAAGCCCTAGTTTTCCCTTCATATAAGCTTGGTAGATCATTTATCTATTTTTGTGGTCTTTCTCTAGTTTCAAAACTGTTATACTTGGATTTTGTTGGTTATTTAAACTGCAGAAGGATTAGCAAAGTCTAATGCAAAGGCCTGGCGGCTATTCTAGGATTGGAATTTGAGCTTAATAAGTTCTTCTTTCCCTTCTATCTTCCTAATACCCGATTAGCTGAGAAACAATTTCCTGGGCCAAATGGAAAAAAGGAAAATAAGAGACCTTGTTTCATGACCTTTATTCTGGATTATATTCAACTCTTCACACAAAGAGAGAGGCTACTAGTTTCCTTTCAATCACCCTGTATCACCTATTAACCTCTGAATGAATTTAAGCATTTATCTTAGTTGGTTTTTACTTCATTTGTAAGTGATTAAGCTGGTGATTGCGTCATTTTGACTATTTCATCTTTTCATCTTTATGAAAAATGCAATGCAGATTGTCAAGTGTGGGGATTATTTTCAGGCAGATGGTGGTCCCAGAAGATTTGGCAATATATGTATTGTTACGAAGTGGATAAAGACGACTCAGACTTCATTGATTTTGCGATGTCTGGAGGTGAACTATATTGAGGTTAGTAAATTTTTTTCTGTCCGTGTTATACACAAGGAGAAGAGCATGAAGAATCTTATTATGTTGGACATGTATATGGAACCGCTGGAAACTATTTACCTGTTTCATTTGATGGAGAGTGAGAGTTGCTGATGTACATATTTTGATTTCTGCAGCATTTTACATATCCAGACTGATACACTTCTTCTCCAGTAAATATGAGTCCTTGGCTTTAGAATACCCTTCTTTAAAGCTCTATGATCACGCATTGCTCTTTTTGCATAAGTTCTCCCAAAATTTGGGTTTTTTTTTATGAGAGCAAGAATAAAAAGGAATTGCAACATATGGGGAAAATTTTGCAATACTATATGATGATTTCCATCAGTATTGCCTTCAACAATCAATTGGATAGTATGGTGTCATTTTTGCTCGTTGTCTCTTCTTGTATATAATCGATGCAATTCCATCTCTAGCTTCAATTAGTGGTTTTAAACCAAACAGGAAGACTGATTGACTTGTAAACCATCCAGATATGGCTTTGGAAACCTGCCTTTTGTCTATTTCAAGGCCTTGTCTTAGTTGCAGCAAGACTTTTTAAGTAACACAGATAATGATTATGAATGCTAATTAAGTGGAAAAGATTCTTTGGTGGTTCCTCACCCCTCCTTCACTATTTTCAAAGTCCCATTTTGAAGCACTTTATTCTACTGTGGAATCGTTTCTGCCTGCATTCTTGTTCCTTCTTTTACAATCTTTGATGCTTGGATAGACTGTTTAAGATACATGACAACACCTTTTTCCCTCTTCCTTACATGAGGACAACTTGAATGCTAGTTCTATTTGTTTTATCTTGTGTTTAAATTACTTTTATAGCTGTGTACACACCATCCTCGCCAGATCTCACTTGTGGGATTACACTGGGTATGTTGTTATAGCAGATCTAGTTTTTCTCTTGCCATGTGTAGTAGGTGGCAATAGACGACTTGTTTGCGTGAGAAGGCTCACAATTGGTACTACAGTCATTGCGGCAATCCCTTAGCGATCTCTTTCAAGTAATTCTGGCATTTTTATTGTTGGGAGTAAAGAAAAACTTCAGTCTTTCACTTTGCAGTATAAATGCTTTATTTCGTATTATGATATCAGAAATGTGGTTTCTTTAACCTTGTACTTTTAGTGGAATTACCTTTTGGCAATCTTGTAAGTAGTTCATACAATGGTATGTAATTGTGGCCCAATTCTCCCACTCACTTGTCATCCTTACATATAGTTAACACTAATTTCTTGCCCATATTATGAGGGAAATGGCAATAAATGTGTGATCTTTTCTCCTTGCTATTTGCCAGTCAACAGAACCACCTTTGTGTGTTTTACACATTCAATATCCCGACTGGCCTGACCATGGAGTTCCAAAGGACACTCTTGCTGTTCGTGAAATA</genome_strand>
        <mrna_strand>GGCCTGTTAATTCGGAATCGGAGGCAGATATCAGCGATGGCCACCGCCGGTAAACTCGTGTCGTCGTCGTCGTCGTCACCCAAGCCTTTCGATTTCTCCGACGATTCAGTTCCTAAGAGAGTCGTTCTGTCGAGTGATCAGCAGCGTTATTGCTTGGAAGTACTCAAAGTCTTCAAGGACAAGAGGTTTTCTGCTCCCGAAAAAATCCGCCAAGAGTTCATGACGTTGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTAGGATGAGAGCTTCAGAAATGAAAAGTAGATGCTCAATGGCTTTGAACAGCGCAAACATTAGCAAAAATCGATACACTGATGTTCTGCCAT............................................................................................TTGACAATAACAGGGTTGTTTTGGACCCACCAGCTAGAGGATATATAAATGCAAGCTTCATTAAG.................................................................................................................................ATATCTGAAGACGTGTCTCAGTTTATTGCAACACAAGGTCCTCTACAACACACTTTTGAAGACTTCTGGGAAATGATAATCCAGCATCGCTGTCCTGTGATTGTGATGCTTACACAATTGTTTGACAACTACAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTCAAGTGTGGGGATTATTTTCAGGCAGATGGTGGTCCCAGAAGATTTGGCAATATATGTATTGTTACGAAGTGGATAAAGACGACTCAGACTTCATTGATTTTGCGATGTCTGGAGGTGAACTATATTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACAGAACCACCTTTGTGTGTTTTACACATTCAATATCCCGACTGGCCTGACCATGGAGTTCCCAAGGACACTCTTGCTGTTCGTGAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E571899" ref_strand="+" ref_description="SGN-E571899 [30967]">
      <seq>accacgggttgcggactgtccattcggaatcggagccggagatcggtgatggctaccgccggtaaacccgcgtcgtcgtcagcacccaagtctttcgatttctccgacgattcagttccgaagagagtcgttctgtcgagtgatcagcagcgttgttgcttggaagcactcaaagtcttcaaggataagaggttttctgctcccgaaaaaatccgccaagagttcatgactttgcaggcaactaggatgagagcttcagaaatgaagagtagatgctcaatggctttgaacagcgcaaacattagcaaaaatcgatatactgatgttctgccatttgacaataacagggttgttttggacccaccagctagaggatatataaatgcaagcttcattaagatatccgaagatgtgtctcagtttattgcaacacaaggtccgctacagaacacttttgaagacttctgggaaatgataatccagcatcgctgtcctgtgattgtgatgcttacacaattgtttgacaactacaagattgtcaagtgtggggattattttcaggcagatggtggtcccagaagatttggcaatatatgtattgttacgaagtggataaagacgactcagacttcattgattttgcaatgtctggaggtgaactatattgagtcaaaagaaccagctttgtgtgttttacacattcaatatcccga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90025" stop="82432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89725" g_stop="89483" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89482" i_stop="86606" i_length="2877">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.637" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86605" g_stop="86509" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="334" r_length="97" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86508" i_stop="86417" i_length="92">
            <donor d_prob="0.966" d_score="0.98"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86416" g_stop="86352" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="399" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86351" i_stop="86223" i_length="129">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86222" g_stop="86088" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="534" r_length="135" r_score="0.963"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86087" i_stop="84233" i_length="1855">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84232" g_stop="84098" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="669" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84097" i_stop="82776" i_length="1322">
            <donor d_prob="0.857" d_score="0.98"/>
            <acceptor a_prob="0.116" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82775" g_stop="82732" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="713" r_length="44" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E571899" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E571899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89725" e_stop="89483"/>
          <exon e_start="86605" e_stop="86509"/>
          <exon e_start="86416" e_stop="86352"/>
          <exon e_start="86222" e_stop="86088"/>
          <exon e_start="84232" e_stop="84098"/>
          <exon e_start="82775" e_stop="82732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACGGGGTGCGGACTGTCCATTCGGAATCGGAGGCAGATATCAGCGATGGCCACCGCCGGTAAACTCGTGTCGTCGTCGTCGTCGTCACCCAAGCCTTTCGATTTCTCCGACGATTCAGTTCCTAAGAGAGTCGTTCTGTCGAGTGATCAGCAGCGTTATTGCTTGGAAGTACTCAAAGTCTTCAAGGACAAGAGGTTTTCTGCTCCCGAAAAAATCCGCCAAGAGTTCATGACGTTGCAGGTCCGTTTGCATTATACTCTCTTTCTTTCTCAATTTTATTGTTATTTAATGTTGTGCTTTTTCATAAAAGAGGAGGGTATTTATTCAATTGGTCAATTTTTTTGAAGAATATTTTCTCAAGTTACTCGAAGAATGATGAAAATAACTTCCAAAACAGGTTCTACAAGTGATGTGTACCTCTGTCTTTGAAGAAACAGAGGAGGGGGGCCAGTTTAGGAGTCTCATTTTTTTGATTCATTCATTCATAAGAGTGTATGATAAGAAAAAGTCCTCCAACACACCTCATCTTTACCTCCGTTATTTGTCTATATTATATACAAATGCTTTTAGTATAGTATATTTTGCTAAGTACTATACACGAGAAAATAAGTTACAAATCCACTTATTTCCTGGAAAACTATTTCCTTCATACAGAATACACCCGAAATGTTGAATTTGGGATATATGAGATGGATCCAAACAGAGTGAGATGGATATAAAGTATTCTTAGTCCATGTTCAACTAGTTAGGGAATATGGTGGAGTTGATTGACGTGTGATGATTATTTGATTTTTAGTTGGATATTCACAGTCATATTATCATATATCAATTAGAAAAACCAAGTCTTTCTATGCTAAGAATGAGTTGCTGTCGTCATTGGACTTTTCAACGTTTCTTCTTCACATAGGTGGTTCCATTCTTGGAAAATTGTGGTAGTTTGAATGCTTCAAACAGCAAATTCATTGGAACGTATTAAATGGTTCATATTAATCGATATGTATATAGAGGATTTATGCTATGGACTCCAGGTAATTTAGAATTAAGATTTAGTTGATAAATTGACTGATTGAAGTGTTGGTAAATTGTTTGAGTTCTAGTTGGATTTTTACTGTCATACTATTTTGAAAAGGGAAATCACTTACTCCTTGTAGGATGACTGTCAACCTTAACTAGGTGATAACATCATGAAGGCTTTAGGCATTTAATTCATTACGTCATATGAAATAGGCTGAAGTTAGTTGATCTTGAGCCGACTACTAGTAGTTAGGGATCGAGAAGTAGTTAACCGGTTGATTGATTGATTCAAAGTTTTGGGTGATATTGATGACGTCAATTTATTCGATTCAAACACAATACACATAACATTTTTCCAAAGTGGGAATATAACTAAGTTAAAGACTTAGCGCTTCTAATATTCTGACATATGCTATTTTGAAACATCTCCTACTGTGTTCAATCATAATTTTAAGCTCTCAGCATTAGCATGTGTTGTAGTATGTTTTACAGGATTCTACAATCTATACCATATCGCTAGCCTTTCCTCTCTGAATTTGTACATCTTTTCACTACAATTAGTGTCTCCTTGAGATATAGCATCTTTTTTTTTTTCGATTGGTAAAAGTAATTTGATTCAACAAAATGCTCTTTCTGGTATAGAATTTTTGCAGCATTCTTCCCCTCATTTCACTTATCCTATGCTAATATGATAATCCAAAACTTGTTGCTTCTCATTTAACATTCTTTATGTTTTCTTGTAGGTAATCATGCTTAGAAGATTAGAGTTAGAATTTGTTTCCACGTGAAAAAAGGACTAGTTCTTTTTCCTTTCAAAGAGTAATTATTTATTGATCCCGCTTAGGGATTACACTGGGTATGTTGTTGTATGTGAAAGCTCATACTAGGGTATAGGAGAAGTAAAGAAGTTCTGCAAAAATACAGTTCTCTATGAACAACATCTAGTTAGTATAACTCTGTACTACCAGAGGTTTTATGTTCTCTCTTAAATTTACTAGAAACAACATATTTGCCTTAATTTGCATGAGAATACCTTTTTATCGGTAATTTGTATAACAGTATTATTCTCCCCTCGGAAACTCCATTCCTTTCTCTCCTATTACCCACATTTGGACAGACCAGGTTACATTCCTGCTCTCTATCTCCGTTTCCTTCTTTCTTCTAAAGCTCCAACTGAACATGAGATCTTTCCTTGTATATGCTATTGCCTACTGAACGCCAAAGGGATTCAATACTACGCACTTTAATCAACTTTCTAATGGGCAATGCGTGAGCAAGTGATCCACATCTGCGCAGGATTGTTTACACATATAGCACCAGCTATTTTGTCCTAACTTCCGTTTGCTCAAGTTCTCTGCAGTAAGGATGACTACCCTTGCTGTTGCTGGAAAACATACCTTCATCAGAGCTCTAGGAATCCAGATTGAGATCTGTGGGAGAATTATGTGTTTTCTTTTTAGTAGTCTGTCGTAGGACTACTTAAGTCCAAAATTCCTCATGCTTGCCCATTCCATAACTAAGAATTCTGACCTGTTGGTGTGATGTTTTGCTTTTAAATAGGTTGTGGAACTCACCTATCTCCCACAGCTGTAATGATCAAGTTGCTTAGTTTTGTTGTTACATTTCAGAGAGTAATATTGTTACTTTTTTGAGATCCGGAATGTATTAGGAAGACCTTGCTCAAAGTATCAACTCCGAAAAGCAAAAATGGAGGCATATTGGGAGTTAGGTGGTCTTAACTCTTAAGTGTCTATATGAAGCAAAATAACACCTTTAGATAGTTTTAAGAAAATATTGAGAAGCTTCTTTGATGGTTGAGTTCATTTATGTAATGTTTCCCGCTCTCATTTAAATCTAGTTTCCAAAAAAAAAAATCAAAATCCAAGCATCTTTTTTATGATGTTTTGGGTAGATGCTGGTGGTGGTGACTCCACTTAAAATGAGCTAAATTTATGTGAAAGGACAGCTCTCTTATGTCTTGAGAAAGTTGTTGTTGCATGATGTTGTTTGTTTTGCTTCTTTGTTATTTACTTGTTGAGATCTTGGCTTTCTGTAAGTAGCATGATGTTATCCTGAATTCCAAGAACACCTCTTATGACTCAGGCAACTAGGATGAGAGCTTCAGAAATGAAAAGTAGATGCTCAATGGCTTTGAACAGCGCAAACATTAGCAAAAATCGATACACTGATGTTCTGCCATGTATGCAGATCAGTTTCTATCAATTCTTCGATTGATGTTGAAGTTGTGTATTATAACCTGTGAATAATTATATCAAGCTTCATTCTTCTCAGTTGACAATAACAGGGTTGTTTTGGACCCACCAGCTAGAGGATATATAAATGCAAGCTTCATTAAGGTAGACTTCTACGTCCATTACTTGAAATTAGTTAAGCATGCTACTTGCTTTTGATACTCTCTTGGAAAATGTCAAGCTCTCTTCCACCAATCTGCTTCATGAGCATTATAATGCTCCTTTTTGCTGTAGATATCTGAAGACGTGTCTCAGTTTATTGCAACACAAGGTCCTCTACAACACACTTTTGAAGACTTCTGGGAAATGATAATCCAGCATCGCTGTCCTGTGATTGTGATGCTTACACAATTGTTTGACAACTACAAGGTATTCAACTGTTAAATTACGAGGTAAGCATTGTAATGTTAACAAGACAAGATATCTTGTTCTGTCATGTCACATGTGACAGAAAGAAAAAAATTGAGATTTTTTGTGACAAGGCTTCTGATCCAAAATTTGCTACCTAGGTAAAATTCTAACTTTTCTGCCTTTTTCATCTCTTGATTTTCATCCTCTGTTGTAATTAGATCTAGCATTTTTATACTTTCAGAAAGGTGCAACTGAACCTTTGATACTGTTTTTGCATTTTTTCTTGAGATACTTTGCCCCTTTACTATGTACTCTTCTATATTTTGAGTGGTGAGATAGGTTGGGGAAAAGAAACAGTAGAGAAAAAAAATATCTTAACCATCTCTTCTTGCTTGTCAATCTTTATTTCACACCTCTGTGTATAATTTCTTACACAGAAAGGAACAAACAGGTCGGTATTTTCAATATATATGCTACTACATCTTCTCGAAAAATAGAAAAAAGAAAAGTTTGGTGGTAAATGAATGCTCATTTTCTATCAGCATTCTTTTACATTAGGGGTGTCAAATGGGCGGGTTGGGTTGAAATTGGAAATATTACAATGGGCTGAATAGAAATCGGGTTGGGTCTTGACCCGCCCAAGTTTACGTTGGGCTCATATGGGTTGGGCTCAAATGGGTTGGGTCTTGACCCGCCCAATTTGACCCGATAAATCTCAATAATTTAACATATTATTATTTAACTTTTATAATCACAATTTGAATTTCTGCTCAAGATTTTTTTGTTAAAAAAGTAACAAATGGATAGATAATTCCTAAAAGATGTTGAATAGATAATAATTCATACCTTCAATACAGGAACATATCTTAATAAAAAAATTTAAACGGGTTGAAATTGGAGATTGAATTGGGCTCAATTGAGAATTCTCTTCAAATGGGTTAAGCTTGAATGGGTTGGGATTGAACCCATTTCAAATTATCTTGAGCCCAACCTTTAAAATTTTGTGCGGGTTGGCTGGGTTACCTATGTTTGATTTCATTTTTGACACCTATTTTACATCATCCTTTCTGGCCCTAATTCAAGCCGGAGGTTGTGGCTTTAAGGTCTGTTTAAATTTGATATAGTCATCACTGTCAATCTTTCTGCTAGTCATCACTCATCACTGGCAATCTTTCTGAGTAGGGAATGTTTCTCCTATAGACTATTTCAGAGCTTGGGCATATTTTGATGGAGTTGGTATAAGTAGACTTCTAGTGTGGTGCTTAAAGATATTATATGATCACTAGCTTGTGACTTCGTGATGAATATAAAGCTTGTAGGTGAATAACTTTTGCAGAAAATCAGCTTCTGTTGGGGAAGGTTCCAATTGAAGTTTATATTCCATCACGGGAAAAAGCCCTAGTTTTCCCTTCATATAAGCTTGGTAGATCATTTATCTATTTTTGTGGTCTTTCTCTAGTTTCAAAACTGTTATACTTGGATTTTGTTGGTTATTTAAACTGCAGAAGGATTAGCAAAGTCTAATGCAAAGGCCTGGCGGCTATTCTAGGATTGGAATTTGAGCTTAATAAGTTCTTCTTTCCCTTCTATCTTCCTAATACCCGATTAGCTGAGAAACAATTTCCTGGGCCAAATGGAAAAAAGGAAAATAAGAGACCTTGTTTCATGACCTTTATTCTGGATTATATTCAACTCTTCACACAAAGAGAGAGGCTACTAGTTTCCTTTCAATCACCCTGTATCACCTATTAACCTCTGAATGAATTTAAGCATTTATCTTAGTTGGTTTTTACTTCATTTGTAAGTGATTAAGCTGGTGATTGCGTCATTTTGACTATTTCATCTTTTCATCTTTATGAAAAATGCAATGCAGATTGTCAAGTGTGGGGATTATTTTCAGGCAGATGGTGGTCCCAGAAGATTTGGCAATATATGTATTGTTACGAAGTGGATAAAGACGACTCAGACTTCATTGATTTTGCGATGTCTGGAGGTGAACTATATTGAGGTTAGTAAATTTTTTTCTGTCCGTGTTATACACAAGGAGAAGAGCATGAAGAATCTTATTATGTTGGACATGTATATGGAACCGCTGGAAACTATTTACCTGTTTCATTTGATGGAGAGTGAGAGTTGCTGATGTACATATTTTGATTTCTGCAGCATTTTACATATCCAGACTGATACACTTCTTCTCCAGTAAATATGAGTCCTTGGCTTTAGAATACCCTTCTTTAAAGCTCTATGATCACGCATTGCTCTTTTTGCATAAGTTCTCCCAAAATTTGGGTTTTTTTTTATGAGAGCAAGAATAAAAAGGAATTGCAACATATGGGGAAAATTTTGCAATACTATATGATGATTTCCATCAGTATTGCCTTCAACAATCAATTGGATAGTATGGTGTCATTTTTGCTCGTTGTCTCTTCTTGTATATAATCGATGCAATTCCATCTCTAGCTTCAATTAGTGGTTTTAAACCAAACAGGAAGACTGATTGACTTGTAAACCATCCAGATATGGCTTTGGAAACCTGCCTTTTGTCTATTTCAAGGCCTTGTCTTAGTTGCAGCAAGACTTTTTAAGTAACACAGATAATGATTATGAATGCTAATTAAGTGGAAAAGATTCTTTGGTGGTTCCTCACCCCTCCTTCACTATTTTCAAAGTCCCATTTTGAAGCACTTTATTCTACTGTGGAATCGTTTCTGCCTGCATTCTTGTTCCTTCTTTTACAATCTTTGATGCTTGGATAGACTGTTTAAGATACATGACAACACCTTTTTCCCTCTTCCTTACATGAGGACAACTTGAATGCTAGTTCTATTTGTTTTATCTTGTGTTTAAATTACTTTTATAGCTGTGTACACACCATCCTCGCCAGATCTCACTTGTGGGATTACACTGGGTATGTTGTTATAGCAGATCTAGTTTTTCTCTTGCCATGTGTAGTAGGTGGCAATAGACGACTTGTTTGCGTGAGAAGGCTCACAATTGGTACTACAGTCATTGCGGCAATCCCTTAGCGATCTCTTTCAAGTAATTCTGGCATTTTTATTGTTGGGAGTAAAGAAAAACTTCAGTCTTTCACTTTGCAGTATAAATGCTTTATTTCGTATTATGATATCAGAAATGTGGTTTCTTTAACCTTGTACTTTTAGTGGAATTACCTTTTGGCAATCTTGTAAGTAGTTCATACAATGGTATGTAATTGTGGCCCAATTCTCCCACTCACTTGTCATCCTTACATATAGTTAACACTAATTTCTTGCCCATATTATGAGGGAAATGGCAATAAATGTGTGATCTTTTCTCCTTGCTATTTGCCAGTCAACAGAACCACCTTTGTGTGTTTTACACATTCAATATCCCGA</genome_strand>
        <mrna_strand>ACCACGGGTTGCGGACTGTCCATTCGGAATCGGAGCCGGAGATCGGTGATGGCTACCGCCGGTAAAC-C-CG-CGTCGTCGTC--AG-CACCCAAGTCTTTCGATTTCTCCGACGATTCAGTTCCGAAGAGAGTCGTTCTGTCGAGTGATCAGCAGCGTTGTTGCTTGGAAGCACTCAAAGTCTTCAAGGATAAGAGGTTTTCTGCTCCCGAAAAAATCCGCCAAGAGTTCATGACTTTGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTAGGATGAGAGCTTCAGAAATGAAGAGTAGATGCTCAATGGCTTTGAACAGCGCAAACATTAGCAAAAATCGATATACTGATGTTCTGCCAT............................................................................................TTGACAATAACAGGGTTGTTTTGGACCCACCAGCTAGAGGATATATAAATGCAAGCTTCATTAAG.................................................................................................................................ATATCCGAAGATGTGTCTCAGTTTATTGCAACACAAGGTCCGCTACAGAACACTTTTGAAGACTTCTGGGAAATGATAATCCAGCATCGCTGTCCTGTGATTGTGATGCTTACACAATTGTTTGACAACTACAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTCAAGTGTGGGGATTATTTTCAGGCAGATGGTGGTCCCAGAAGATTTGGCAATATATGTATTGTTACGAAGTGGATAAAGACGACTCAGACTTCATTGATTTTGCAATGTCTGGAGGTGAACTATATTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAAAGAACCAGCTTTGTGTGTTTTACACATTCAATATCCCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458898" ref_strand="+" ref_description="SGN-E458898 [cPRO-32-B8]">
      <seq>ctcctactcatctccaaatagaattagacaaggaaccacgggttgcggactgtccattcggattcggagatcggtgatggctaccgccggtaaacccgcatcgtcgtcagcacccaagcctttcgatttctccgacgattcagttcctaagagagtcgttctgtcgattgatcagcagcgttgttgcttggaagcactcgaagtcttcaaggacaagaggttttctgctcccgaaaaaatccgccaagagttcatgactttgcaggcaactaggatgagagcttcagaaatgaagagtagatgctcaatggctttgaacagcggaaacattagcaaaaatcgatacactgatgttctgccatttgacaataacagggttgttttggacccaccagctagaggatatataaatgcaagcttcattaagatatccgaagacgtgtctcagtttattgcaacacaaggtccgctacagcacacttttgaagacttctgggaaatgataatccagcatcgctgtcctgtgattgtgatgcttacacaattgtttgacaactacaagattgtcaagtgtggggattattttcaggcagatggtggttccagaagatttggcaatatatgtattgttacgaagtggataaagacgactcagacttcattgattttgcgatgtctggaggtgaactatattgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90025" stop="83798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89723" g_stop="89483" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="265" r_length="229" r_score="0.896"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89482" i_stop="86606" i_length="2877">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.637" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86605" g_stop="86509" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="362" r_length="97" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86508" i_stop="86417" i_length="92">
            <donor d_prob="0.966" d_score="0.98"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86416" g_stop="86352" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="427" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86351" i_stop="86223" i_length="129">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86222" g_stop="86088" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="562" r_length="135" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86087" i_stop="84233" i_length="1855">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84232" g_stop="84098" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="697" r_length="135" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E458898" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E458898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89723" e_stop="89483"/>
          <exon e_start="86605" e_stop="86509"/>
          <exon e_start="86416" e_stop="86352"/>
          <exon e_start="86222" e_stop="86088"/>
          <exon e_start="84232" e_stop="84098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGGGGTGCGGACTGTCCATTCGGAATCGGAGGCAGATATCAGCGATGGCCACCGCCGGTAAACTCGTGTCGTCGTCGTCGTCGTCACCCAAGCCTTTCGATTTCTCCGACGATTCAGTTCCTAAGAGAGTCGTTCTGTCGAGTGATCAGCAGCGTTATTGCTTGGAAGTACTCAAAGTCTTCAAGGACAAGAGGTTTTCTGCTCCCGAAAAAATCCGCCAAGAGTTCATGACGTTGCAGGTCCGTTTGCATTATACTCTCTTTCTTTCTCAATTTTATTGTTATTTAATGTTGTGCTTTTTCATAAAAGAGGAGGGTATTTATTCAATTGGTCAATTTTTTTGAAGAATATTTTCTCAAGTTACTCGAAGAATGATGAAAATAACTTCCAAAACAGGTTCTACAAGTGATGTGTACCTCTGTCTTTGAAGAAACAGAGGAGGGGGGCCAGTTTAGGAGTCTCATTTTTTTGATTCATTCATTCATAAGAGTGTATGATAAGAAAAAGTCCTCCAACACACCTCATCTTTACCTCCGTTATTTGTCTATATTATATACAAATGCTTTTAGTATAGTATATTTTGCTAAGTACTATACACGAGAAAATAAGTTACAAATCCACTTATTTCCTGGAAAACTATTTCCTTCATACAGAATACACCCGAAATGTTGAATTTGGGATATATGAGATGGATCCAAACAGAGTGAGATGGATATAAAGTATTCTTAGTCCATGTTCAACTAGTTAGGGAATATGGTGGAGTTGATTGACGTGTGATGATTATTTGATTTTTAGTTGGATATTCACAGTCATATTATCATATATCAATTAGAAAAACCAAGTCTTTCTATGCTAAGAATGAGTTGCTGTCGTCATTGGACTTTTCAACGTTTCTTCTTCACATAGGTGGTTCCATTCTTGGAAAATTGTGGTAGTTTGAATGCTTCAAACAGCAAATTCATTGGAACGTATTAAATGGTTCATATTAATCGATATGTATATAGAGGATTTATGCTATGGACTCCAGGTAATTTAGAATTAAGATTTAGTTGATAAATTGACTGATTGAAGTGTTGGTAAATTGTTTGAGTTCTAGTTGGATTTTTACTGTCATACTATTTTGAAAAGGGAAATCACTTACTCCTTGTAGGATGACTGTCAACCTTAACTAGGTGATAACATCATGAAGGCTTTAGGCATTTAATTCATTACGTCATATGAAATAGGCTGAAGTTAGTTGATCTTGAGCCGACTACTAGTAGTTAGGGATCGAGAAGTAGTTAACCGGTTGATTGATTGATTCAAAGTTTTGGGTGATATTGATGACGTCAATTTATTCGATTCAAACACAATACACATAACATTTTTCCAAAGTGGGAATATAACTAAGTTAAAGACTTAGCGCTTCTAATATTCTGACATATGCTATTTTGAAACATCTCCTACTGTGTTCAATCATAATTTTAAGCTCTCAGCATTAGCATGTGTTGTAGTATGTTTTACAGGATTCTACAATCTATACCATATCGCTAGCCTTTCCTCTCTGAATTTGTACATCTTTTCACTACAATTAGTGTCTCCTTGAGATATAGCATCTTTTTTTTTTTCGATTGGTAAAAGTAATTTGATTCAACAAAATGCTCTTTCTGGTATAGAATTTTTGCAGCATTCTTCCCCTCATTTCACTTATCCTATGCTAATATGATAATCCAAAACTTGTTGCTTCTCATTTAACATTCTTTATGTTTTCTTGTAGGTAATCATGCTTAGAAGATTAGAGTTAGAATTTGTTTCCACGTGAAAAAAGGACTAGTTCTTTTTCCTTTCAAAGAGTAATTATTTATTGATCCCGCTTAGGGATTACACTGGGTATGTTGTTGTATGTGAAAGCTCATACTAGGGTATAGGAGAAGTAAAGAAGTTCTGCAAAAATACAGTTCTCTATGAACAACATCTAGTTAGTATAACTCTGTACTACCAGAGGTTTTATGTTCTCTCTTAAATTTACTAGAAACAACATATTTGCCTTAATTTGCATGAGAATACCTTTTTATCGGTAATTTGTATAACAGTATTATTCTCCCCTCGGAAACTCCATTCCTTTCTCTCCTATTACCCACATTTGGACAGACCAGGTTACATTCCTGCTCTCTATCTCCGTTTCCTTCTTTCTTCTAAAGCTCCAACTGAACATGAGATCTTTCCTTGTATATGCTATTGCCTACTGAACGCCAAAGGGATTCAATACTACGCACTTTAATCAACTTTCTAATGGGCAATGCGTGAGCAAGTGATCCACATCTGCGCAGGATTGTTTACACATATAGCACCAGCTATTTTGTCCTAACTTCCGTTTGCTCAAGTTCTCTGCAGTAAGGATGACTACCCTTGCTGTTGCTGGAAAACATACCTTCATCAGAGCTCTAGGAATCCAGATTGAGATCTGTGGGAGAATTATGTGTTTTCTTTTTAGTAGTCTGTCGTAGGACTACTTAAGTCCAAAATTCCTCATGCTTGCCCATTCCATAACTAAGAATTCTGACCTGTTGGTGTGATGTTTTGCTTTTAAATAGGTTGTGGAACTCACCTATCTCCCACAGCTGTAATGATCAAGTTGCTTAGTTTTGTTGTTACATTTCAGAGAGTAATATTGTTACTTTTTTGAGATCCGGAATGTATTAGGAAGACCTTGCTCAAAGTATCAACTCCGAAAAGCAAAAATGGAGGCATATTGGGAGTTAGGTGGTCTTAACTCTTAAGTGTCTATATGAAGCAAAATAACACCTTTAGATAGTTTTAAGAAAATATTGAGAAGCTTCTTTGATGGTTGAGTTCATTTATGTAATGTTTCCCGCTCTCATTTAAATCTAGTTTCCAAAAAAAAAAATCAAAATCCAAGCATCTTTTTTATGATGTTTTGGGTAGATGCTGGTGGTGGTGACTCCACTTAAAATGAGCTAAATTTATGTGAAAGGACAGCTCTCTTATGTCTTGAGAAAGTTGTTGTTGCATGATGTTGTTTGTTTTGCTTCTTTGTTATTTACTTGTTGAGATCTTGGCTTTCTGTAAGTAGCATGATGTTATCCTGAATTCCAAGAACACCTCTTATGACTCAGGCAACTAGGATGAGAGCTTCAGAAATGAAAAGTAGATGCTCAATGGCTTTGAACAGCGCAAACATTAGCAAAAATCGATACACTGATGTTCTGCCATGTATGCAGATCAGTTTCTATCAATTCTTCGATTGATGTTGAAGTTGTGTATTATAACCTGTGAATAATTATATCAAGCTTCATTCTTCTCAGTTGACAATAACAGGGTTGTTTTGGACCCACCAGCTAGAGGATATATAAATGCAAGCTTCATTAAGGTAGACTTCTACGTCCATTACTTGAAATTAGTTAAGCATGCTACTTGCTTTTGATACTCTCTTGGAAAATGTCAAGCTCTCTTCCACCAATCTGCTTCATGAGCATTATAATGCTCCTTTTTGCTGTAGATATCTGAAGACGTGTCTCAGTTTATTGCAACACAAGGTCCTCTACAACACACTTTTGAAGACTTCTGGGAAATGATAATCCAGCATCGCTGTCCTGTGATTGTGATGCTTACACAATTGTTTGACAACTACAAGGTATTCAACTGTTAAATTACGAGGTAAGCATTGTAATGTTAACAAGACAAGATATCTTGTTCTGTCATGTCACATGTGACAGAAAGAAAAAAATTGAGATTTTTTGTGACAAGGCTTCTGATCCAAAATTTGCTACCTAGGTAAAATTCTAACTTTTCTGCCTTTTTCATCTCTTGATTTTCATCCTCTGTTGTAATTAGATCTAGCATTTTTATACTTTCAGAAAGGTGCAACTGAACCTTTGATACTGTTTTTGCATTTTTTCTTGAGATACTTTGCCCCTTTACTATGTACTCTTCTATATTTTGAGTGGTGAGATAGGTTGGGGAAAAGAAACAGTAGAGAAAAAAAATATCTTAACCATCTCTTCTTGCTTGTCAATCTTTATTTCACACCTCTGTGTATAATTTCTTACACAGAAAGGAACAAACAGGTCGGTATTTTCAATATATATGCTACTACATCTTCTCGAAAAATAGAAAAAAGAAAAGTTTGGTGGTAAATGAATGCTCATTTTCTATCAGCATTCTTTTACATTAGGGGTGTCAAATGGGCGGGTTGGGTTGAAATTGGAAATATTACAATGGGCTGAATAGAAATCGGGTTGGGTCTTGACCCGCCCAAGTTTACGTTGGGCTCATATGGGTTGGGCTCAAATGGGTTGGGTCTTGACCCGCCCAATTTGACCCGATAAATCTCAATAATTTAACATATTATTATTTAACTTTTATAATCACAATTTGAATTTCTGCTCAAGATTTTTTTGTTAAAAAAGTAACAAATGGATAGATAATTCCTAAAAGATGTTGAATAGATAATAATTCATACCTTCAATACAGGAACATATCTTAATAAAAAAATTTAAACGGGTTGAAATTGGAGATTGAATTGGGCTCAATTGAGAATTCTCTTCAAATGGGTTAAGCTTGAATGGGTTGGGATTGAACCCATTTCAAATTATCTTGAGCCCAACCTTTAAAATTTTGTGCGGGTTGGCTGGGTTACCTATGTTTGATTTCATTTTTGACACCTATTTTACATCATCCTTTCTGGCCCTAATTCAAGCCGGAGGTTGTGGCTTTAAGGTCTGTTTAAATTTGATATAGTCATCACTGTCAATCTTTCTGCTAGTCATCACTCATCACTGGCAATCTTTCTGAGTAGGGAATGTTTCTCCTATAGACTATTTCAGAGCTTGGGCATATTTTGATGGAGTTGGTATAAGTAGACTTCTAGTGTGGTGCTTAAAGATATTATATGATCACTAGCTTGTGACTTCGTGATGAATATAAAGCTTGTAGGTGAATAACTTTTGCAGAAAATCAGCTTCTGTTGGGGAAGGTTCCAATTGAAGTTTATATTCCATCACGGGAAAAAGCCCTAGTTTTCCCTTCATATAAGCTTGGTAGATCATTTATCTATTTTTGTGGTCTTTCTCTAGTTTCAAAACTGTTATACTTGGATTTTGTTGGTTATTTAAACTGCAGAAGGATTAGCAAAGTCTAATGCAAAGGCCTGGCGGCTATTCTAGGATTGGAATTTGAGCTTAATAAGTTCTTCTTTCCCTTCTATCTTCCTAATACCCGATTAGCTGAGAAACAATTTCCTGGGCCAAATGGAAAAAAGGAAAATAAGAGACCTTGTTTCATGACCTTTATTCTGGATTATATTCAACTCTTCACACAAAGAGAGAGGCTACTAGTTTCCTTTCAATCACCCTGTATCACCTATTAACCTCTGAATGAATTTAAGCATTTATCTTAGTTGGTTTTTACTTCATTTGTAAGTGATTAAGCTGGTGATTGCGTCATTTTGACTATTTCATCTTTTCATCTTTATGAAAAATGCAATGCAGATTGTCAAGTGTGGGGATTATTTTCAGGCAGATGGTGGTCCCAGAAGATTTGGCAATATATGTATTGTTACGAAGTGGATAAAGACGACTCAGACTTCATTGATTTTGCGATGTCTGGAGGTGAACTATATTGAG</genome_strand>
        <mrna_strand>CACGGGTTGCGGACTGTCCATTCGGATTCG---G-AG--ATCGGTGATGGCTACCGCCGGTAAAC-C----CG-CATCGTCGTCAGCACCCAAGCCTTTCGATTTCTCCGACGATTCAGTTCCTAAGAGAGTCGTTCTGTCGATTGATCAGCAGCGTTGTTGCTTGGAAGCACTCGAAGTCTTCAAGGACAAGAGGTTTTCTGCTCCCGAAAAAATCCGCCAAGAGTTCATGACTTTGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTAGGATGAGAGCTTCAGAAATGAAGAGTAGATGCTCAATGGCTTTGAACAGCGGAAACATTAGCAAAAATCGATACACTGATGTTCTGCCAT............................................................................................TTGACAATAACAGGGTTGTTTTGGACCCACCAGCTAGAGGATATATAAATGCAAGCTTCATTAAG.................................................................................................................................ATATCCGAAGACGTGTCTCAGTTTATTGCAACACAAGGTCCGCTACAGCACACTTTTGAAGACTTCTGGGAAATGATAATCCAGCATCGCTGTCCTGTGATTGTGATGCTTACACAATTGTTTGACAACTACAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTCAAGTGTGGGGATTATTTTCAGGCAGATGGTGGTTCCAGAAGATTTGGCAATATATGTATTGTTACGAAGTGGATAAAGACGACTCAGACTTCATTGATTTTGCGATGTCTGGAGGTGAACTATATTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E459523" ref_strand="+" ref_description="SGN-E459523 [cPRO-28-I15]">
      <seq>gcggactgtccattcggattcggagatcggtgatggctaccgccggtaaacccgcatcgtcgtcagcacccaagcctttcgatttctccgacgattcagttcctaagagagtcgttctgtcgattgatcagcagcgttgttgcttggaagcactcgaagtcttcaaggacaagaggttttctgctcccgaaaaaatccgccaagagttcatgactttgcaggcaactaggatgagagcttcagaaatgaagagtagatgctcaatggctttgaacagcggaaacattagcaaaaatcgatacactgatgttctgccatttgacaataacagggttgttttggacccaccagctagaggatatataaatgcaagcttcattaagatatccgaagacgtgtctcagtttattgcaacacaaggtccgctacagcacacttttgaagacttctgggaaatgataatccagcatcgctgtcctgtgattgtgatgcttacacaattgtttgacaactacaagattgtcaagtgtggggattattttcaggcagatggtggttccagaagatttgggcatatatgtattgttacgaagtggataaagacgactcagacttcattgattttgcgatgtctgggaggtgactatattgagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90015" stop="83798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89715" g_stop="89483" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89482" i_stop="86606" i_length="2877">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.637" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86605" g_stop="86509" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="318" r_length="97" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86508" i_stop="86417" i_length="92">
            <donor d_prob="0.966" d_score="0.98"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86416" g_stop="86352" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="383" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86351" i_stop="86223" i_length="129">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86222" g_stop="86088" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="518" r_length="135" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86087" i_stop="84233" i_length="1855">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84232" g_stop="84098" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="653" r_length="135" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E459523" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E459523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89715" e_stop="89483"/>
          <exon e_start="86605" e_stop="86509"/>
          <exon e_start="86416" e_stop="86352"/>
          <exon e_start="86222" e_stop="86088"/>
          <exon e_start="84232" e_stop="84098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGACTGTCCATTCGGAATCGGAGGCAGATATCAGCGATGGCCACCGCCGGTAAACTCGTGTCGTCGTCGTCGTCGTCACCCAAGCCTTTCGATTTCTCCGACGATTCAGTTCCTAAGAGAGTCGTTCTGTCGAGTGATCAGCAGCGTTATTGCTTGGAAGTACTCAAAGTCTTCAAGGACAAGAGGTTTTCTGCTCCCGAAAAAATCCGCCAAGAGTTCATGACGTTGCAGGTCCGTTTGCATTATACTCTCTTTCTTTCTCAATTTTATTGTTATTTAATGTTGTGCTTTTTCATAAAAGAGGAGGGTATTTATTCAATTGGTCAATTTTTTTGAAGAATATTTTCTCAAGTTACTCGAAGAATGATGAAAATAACTTCCAAAACAGGTTCTACAAGTGATGTGTACCTCTGTCTTTGAAGAAACAGAGGAGGGGGGCCAGTTTAGGAGTCTCATTTTTTTGATTCATTCATTCATAAGAGTGTATGATAAGAAAAAGTCCTCCAACACACCTCATCTTTACCTCCGTTATTTGTCTATATTATATACAAATGCTTTTAGTATAGTATATTTTGCTAAGTACTATACACGAGAAAATAAGTTACAAATCCACTTATTTCCTGGAAAACTATTTCCTTCATACAGAATACACCCGAAATGTTGAATTTGGGATATATGAGATGGATCCAAACAGAGTGAGATGGATATAAAGTATTCTTAGTCCATGTTCAACTAGTTAGGGAATATGGTGGAGTTGATTGACGTGTGATGATTATTTGATTTTTAGTTGGATATTCACAGTCATATTATCATATATCAATTAGAAAAACCAAGTCTTTCTATGCTAAGAATGAGTTGCTGTCGTCATTGGACTTTTCAACGTTTCTTCTTCACATAGGTGGTTCCATTCTTGGAAAATTGTGGTAGTTTGAATGCTTCAAACAGCAAATTCATTGGAACGTATTAAATGGTTCATATTAATCGATATGTATATAGAGGATTTATGCTATGGACTCCAGGTAATTTAGAATTAAGATTTAGTTGATAAATTGACTGATTGAAGTGTTGGTAAATTGTTTGAGTTCTAGTTGGATTTTTACTGTCATACTATTTTGAAAAGGGAAATCACTTACTCCTTGTAGGATGACTGTCAACCTTAACTAGGTGATAACATCATGAAGGCTTTAGGCATTTAATTCATTACGTCATATGAAATAGGCTGAAGTTAGTTGATCTTGAGCCGACTACTAGTAGTTAGGGATCGAGAAGTAGTTAACCGGTTGATTGATTGATTCAAAGTTTTGGGTGATATTGATGACGTCAATTTATTCGATTCAAACACAATACACATAACATTTTTCCAAAGTGGGAATATAACTAAGTTAAAGACTTAGCGCTTCTAATATTCTGACATATGCTATTTTGAAACATCTCCTACTGTGTTCAATCATAATTTTAAGCTCTCAGCATTAGCATGTGTTGTAGTATGTTTTACAGGATTCTACAATCTATACCATATCGCTAGCCTTTCCTCTCTGAATTTGTACATCTTTTCACTACAATTAGTGTCTCCTTGAGATATAGCATCTTTTTTTTTTTCGATTGGTAAAAGTAATTTGATTCAACAAAATGCTCTTTCTGGTATAGAATTTTTGCAGCATTCTTCCCCTCATTTCACTTATCCTATGCTAATATGATAATCCAAAACTTGTTGCTTCTCATTTAACATTCTTTATGTTTTCTTGTAGGTAATCATGCTTAGAAGATTAGAGTTAGAATTTGTTTCCACGTGAAAAAAGGACTAGTTCTTTTTCCTTTCAAAGAGTAATTATTTATTGATCCCGCTTAGGGATTACACTGGGTATGTTGTTGTATGTGAAAGCTCATACTAGGGTATAGGAGAAGTAAAGAAGTTCTGCAAAAATACAGTTCTCTATGAACAACATCTAGTTAGTATAACTCTGTACTACCAGAGGTTTTATGTTCTCTCTTAAATTTACTAGAAACAACATATTTGCCTTAATTTGCATGAGAATACCTTTTTATCGGTAATTTGTATAACAGTATTATTCTCCCCTCGGAAACTCCATTCCTTTCTCTCCTATTACCCACATTTGGACAGACCAGGTTACATTCCTGCTCTCTATCTCCGTTTCCTTCTTTCTTCTAAAGCTCCAACTGAACATGAGATCTTTCCTTGTATATGCTATTGCCTACTGAACGCCAAAGGGATTCAATACTACGCACTTTAATCAACTTTCTAATGGGCAATGCGTGAGCAAGTGATCCACATCTGCGCAGGATTGTTTACACATATAGCACCAGCTATTTTGTCCTAACTTCCGTTTGCTCAAGTTCTCTGCAGTAAGGATGACTACCCTTGCTGTTGCTGGAAAACATACCTTCATCAGAGCTCTAGGAATCCAGATTGAGATCTGTGGGAGAATTATGTGTTTTCTTTTTAGTAGTCTGTCGTAGGACTACTTAAGTCCAAAATTCCTCATGCTTGCCCATTCCATAACTAAGAATTCTGACCTGTTGGTGTGATGTTTTGCTTTTAAATAGGTTGTGGAACTCACCTATCTCCCACAGCTGTAATGATCAAGTTGCTTAGTTTTGTTGTTACATTTCAGAGAGTAATATTGTTACTTTTTTGAGATCCGGAATGTATTAGGAAGACCTTGCTCAAAGTATCAACTCCGAAAAGCAAAAATGGAGGCATATTGGGAGTTAGGTGGTCTTAACTCTTAAGTGTCTATATGAAGCAAAATAACACCTTTAGATAGTTTTAAGAAAATATTGAGAAGCTTCTTTGATGGTTGAGTTCATTTATGTAATGTTTCCCGCTCTCATTTAAATCTAGTTTCCAAAAAAAAAAATCAAAATCCAAGCATCTTTTTTATGATGTTTTGGGTAGATGCTGGTGGTGGTGACTCCACTTAAAATGAGCTAAATTTATGTGAAAGGACAGCTCTCTTATGTCTTGAGAAAGTTGTTGTTGCATGATGTTGTTTGTTTTGCTTCTTTGTTATTTACTTGTTGAGATCTTGGCTTTCTGTAAGTAGCATGATGTTATCCTGAATTCCAAGAACACCTCTTATGACTCAGGCAACTAGGATGAGAGCTTCAGAAATGAAAAGTAGATGCTCAATGGCTTTGAACAGCGCAAACATTAGCAAAAATCGATACACTGATGTTCTGCCATGTATGCAGATCAGTTTCTATCAATTCTTCGATTGATGTTGAAGTTGTGTATTATAACCTGTGAATAATTATATCAAGCTTCATTCTTCTCAGTTGACAATAACAGGGTTGTTTTGGACCCACCAGCTAGAGGATATATAAATGCAAGCTTCATTAAGGTAGACTTCTACGTCCATTACTTGAAATTAGTTAAGCATGCTACTTGCTTTTGATACTCTCTTGGAAAATGTCAAGCTCTCTTCCACCAATCTGCTTCATGAGCATTATAATGCTCCTTTTTGCTGTAGATATCTGAAGACGTGTCTCAGTTTATTGCAACACAAGGTCCTCTACAACACACTTTTGAAGACTTCTGGGAAATGATAATCCAGCATCGCTGTCCTGTGATTGTGATGCTTACACAATTGTTTGACAACTACAAGGTATTCAACTGTTAAATTACGAGGTAAGCATTGTAATGTTAACAAGACAAGATATCTTGTTCTGTCATGTCACATGTGACAGAAAGAAAAAAATTGAGATTTTTTGTGACAAGGCTTCTGATCCAAAATTTGCTACCTAGGTAAAATTCTAACTTTTCTGCCTTTTTCATCTCTTGATTTTCATCCTCTGTTGTAATTAGATCTAGCATTTTTATACTTTCAGAAAGGTGCAACTGAACCTTTGATACTGTTTTTGCATTTTTTCTTGAGATACTTTGCCCCTTTACTATGTACTCTTCTATATTTTGAGTGGTGAGATAGGTTGGGGAAAAGAAACAGTAGAGAAAAAAAATATCTTAACCATCTCTTCTTGCTTGTCAATCTTTATTTCACACCTCTGTGTATAATTTCTTACACAGAAAGGAACAAACAGGTCGGTATTTTCAATATATATGCTACTACATCTTCTCGAAAAATAGAAAAAAGAAAAGTTTGGTGGTAAATGAATGCTCATTTTCTATCAGCATTCTTTTACATTAGGGGTGTCAAATGGGCGGGTTGGGTTGAAATTGGAAATATTACAATGGGCTGAATAGAAATCGGGTTGGGTCTTGACCCGCCCAAGTTTACGTTGGGCTCATATGGGTTGGGCTCAAATGGGTTGGGTCTTGACCCGCCCAATTTGACCCGATAAATCTCAATAATTTAACATATTATTATTTAACTTTTATAATCACAATTTGAATTTCTGCTCAAGATTTTTTTGTTAAAAAAGTAACAAATGGATAGATAATTCCTAAAAGATGTTGAATAGATAATAATTCATACCTTCAATACAGGAACATATCTTAATAAAAAAATTTAAACGGGTTGAAATTGGAGATTGAATTGGGCTCAATTGAGAATTCTCTTCAAATGGGTTAAGCTTGAATGGGTTGGGATTGAACCCATTTCAAATTATCTTGAGCCCAACCTTTAAAATTTTGTGCGGGTTGGCTGGGTTACCTATGTTTGATTTCATTTTTGACACCTATTTTACATCATCCTTTCTGGCCCTAATTCAAGCCGGAGGTTGTGGCTTTAAGGTCTGTTTAAATTTGATATAGTCATCACTGTCAATCTTTCTGCTAGTCATCACTCATCACTGGCAATCTTTCTGAGTAGGGAATGTTTCTCCTATAGACTATTTCAGAGCTTGGGCATATTTTGATGGAGTTGGTATAAGTAGACTTCTAGTGTGGTGCTTAAAGATATTATATGATCACTAGCTTGTGACTTCGTGATGAATATAAAGCTTGTAGGTGAATAACTTTTGCAGAAAATCAGCTTCTGTTGGGGAAGGTTCCAATTGAAGTTTATATTCCATCACGGGAAAAAGCCCTAGTTTTCCCTTCATATAAGCTTGGTAGATCATTTATCTATTTTTGTGGTCTTTCTCTAGTTTCAAAACTGTTATACTTGGATTTTGTTGGTTATTTAAACTGCAGAAGGATTAGCAAAGTCTAATGCAAAGGCCTGGCGGCTATTCTAGGATTGGAATTTGAGCTTAATAAGTTCTTCTTTCCCTTCTATCTTCCTAATACCCGATTAGCTGAGAAACAATTTCCTGGGCCAAATGGAAAAAAGGAAAATAAGAGACCTTGTTTCATGACCTTTATTCTGGATTATATTCAACTCTTCACACAAAGAGAGAGGCTACTAGTTTCCTTTCAATCACCCTGTATCACCTATTAACCTCTGAATGAATTTAAGCATTTATCTTAGTTGGTTTTTACTTCATTTGTAAGTGATTAAGCTGGTGATTGCGTCATTTTGACTATTTCATCTTTTCATCTTTATGAAAAATGCAATGCAGATTGTCAAGTGTGGGGATTATTTTCAGGCAGATGGTGGTCCCAGAAGATTTGGCAATATATGTATTGTTACGAAGTGGATAAAGACGACTCAGACTTCATTGATTTTGCGATGTCT-GGAGGTGAACTATATTGAG</genome_strand>
        <mrna_strand>GCGGACTGTCCATTCGGATTC---GG-AG--ATCGGTGATGGCTACCGCCGGTAAAC-C-CG-CATCGTCGTCA--G-CACCCAAGCCTTTCGATTTCTCCGACGATTCAGTTCCTAAGAGAGTCGTTCTGTCGATTGATCAGCAGCGTTGTTGCTTGGAAGCACTCGAAGTCTTCAAGGACAAGAGGTTTTCTGCTCCCGAAAAAATCCGCCAAGAGTTCATGACTTTGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTAGGATGAGAGCTTCAGAAATGAAGAGTAGATGCTCAATGGCTTTGAACAGCGGAAACATTAGCAAAAATCGATACACTGATGTTCTGCCAT............................................................................................TTGACAATAACAGGGTTGTTTTGGACCCACCAGCTAGAGGATATATAAATGCAAGCTTCATTAAG.................................................................................................................................ATATCCGAAGACGTGTCTCAGTTTATTGCAACACAAGGTCCGCTACAGCACACTTTTGAAGACTTCTGGGAAATGATAATCCAGCATCGCTGTCCTGTGATTGTGATGCTTACACAATTGTTTGACAACTACAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTCAAGTGTGGGGATTATTTTCAGGCAGATGGTGGTTCCAGAAGATTTGGGCATATATGTATTGTTACGAAGTGGATAAAGACGACTCAGACTTCATTGATTTTGCGATGTCTGGGAGGTG-ACTATATTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251299" ref_strand="+" ref_description="SGN-E251299 [cLEG-10-F20]">
      <seq>aaagcagtgaagtgaacatcctaccacggggtgcggactgtccattcggaatcggaggcagatatcagcgatggccaccgccggtaaactcgtgtcgtcgtcgtcgtcgtcacccaagcctttcgatttctccgacgattcagttcctaagagagtcgttctgtcgagtgatcagcagcgttattgcttggaagtactcaaagtcttcaaggacaagaggttttctgctcccgaaaaaatccgccaagagttcatgacgttgcaggcaactaggatgagagcttcagaaatgaaaagtagatgctcaatggctttgaacagcgcaaacattagcaaaaatcgatacactgatgttctgccatttgacaataacagggttgttttggacccaccagctagaggatatataaatgcaagcttcattaagatatctgaagacgtgtctcagtttattgcaacacaaggtcctctacaacacacttttgaagacttctgggaaatgataatccagcatcgctgtcctgtgattgtgatgcttacacaattgtttgacaactacaagattgtcaagtgtggggattattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90047" stop="83908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89747" g_stop="89483" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89482" i_stop="86606" i_length="2877">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.637" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86605" g_stop="86509" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="362" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86508" i_stop="86417" i_length="92">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86416" g_stop="86352" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="427" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86351" i_stop="86223" i_length="129">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86222" g_stop="86088" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="562" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86087" i_stop="84233" i_length="1855">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84232" g_stop="84208" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="587" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E251299" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89747" e_stop="89483"/>
          <exon e_start="86605" e_stop="86509"/>
          <exon e_start="86416" e_stop="86352"/>
          <exon e_start="86222" e_stop="86088"/>
          <exon e_start="84232" e_stop="84208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCAGTGAAGTGAACATCCTACCACGGGGTGCGGACTGTCCATTCGGAATCGGAGGCAGATATCAGCGATGGCCACCGCCGGTAAACTCGTGTCGTCGTCGTCGTCGTCACCCAAGCCTTTCGATTTCTCCGACGATTCAGTTCCTAAGAGAGTCGTTCTGTCGAGTGATCAGCAGCGTTATTGCTTGGAAGTACTCAAAGTCTTCAAGGACAAGAGGTTTTCTGCTCCCGAAAAAATCCGCCAAGAGTTCATGACGTTGCAGGTCCGTTTGCATTATACTCTCTTTCTTTCTCAATTTTATTGTTATTTAATGTTGTGCTTTTTCATAAAAGAGGAGGGTATTTATTCAATTGGTCAATTTTTTTGAAGAATATTTTCTCAAGTTACTCGAAGAATGATGAAAATAACTTCCAAAACAGGTTCTACAAGTGATGTGTACCTCTGTCTTTGAAGAAACAGAGGAGGGGGGCCAGTTTAGGAGTCTCATTTTTTTGATTCATTCATTCATAAGAGTGTATGATAAGAAAAAGTCCTCCAACACACCTCATCTTTACCTCCGTTATTTGTCTATATTATATACAAATGCTTTTAGTATAGTATATTTTGCTAAGTACTATACACGAGAAAATAAGTTACAAATCCACTTATTTCCTGGAAAACTATTTCCTTCATACAGAATACACCCGAAATGTTGAATTTGGGATATATGAGATGGATCCAAACAGAGTGAGATGGATATAAAGTATTCTTAGTCCATGTTCAACTAGTTAGGGAATATGGTGGAGTTGATTGACGTGTGATGATTATTTGATTTTTAGTTGGATATTCACAGTCATATTATCATATATCAATTAGAAAAACCAAGTCTTTCTATGCTAAGAATGAGTTGCTGTCGTCATTGGACTTTTCAACGTTTCTTCTTCACATAGGTGGTTCCATTCTTGGAAAATTGTGGTAGTTTGAATGCTTCAAACAGCAAATTCATTGGAACGTATTAAATGGTTCATATTAATCGATATGTATATAGAGGATTTATGCTATGGACTCCAGGTAATTTAGAATTAAGATTTAGTTGATAAATTGACTGATTGAAGTGTTGGTAAATTGTTTGAGTTCTAGTTGGATTTTTACTGTCATACTATTTTGAAAAGGGAAATCACTTACTCCTTGTAGGATGACTGTCAACCTTAACTAGGTGATAACATCATGAAGGCTTTAGGCATTTAATTCATTACGTCATATGAAATAGGCTGAAGTTAGTTGATCTTGAGCCGACTACTAGTAGTTAGGGATCGAGAAGTAGTTAACCGGTTGATTGATTGATTCAAAGTTTTGGGTGATATTGATGACGTCAATTTATTCGATTCAAACACAATACACATAACATTTTTCCAAAGTGGGAATATAACTAAGTTAAAGACTTAGCGCTTCTAATATTCTGACATATGCTATTTTGAAACATCTCCTACTGTGTTCAATCATAATTTTAAGCTCTCAGCATTAGCATGTGTTGTAGTATGTTTTACAGGATTCTACAATCTATACCATATCGCTAGCCTTTCCTCTCTGAATTTGTACATCTTTTCACTACAATTAGTGTCTCCTTGAGATATAGCATCTTTTTTTTTTTCGATTGGTAAAAGTAATTTGATTCAACAAAATGCTCTTTCTGGTATAGAATTTTTGCAGCATTCTTCCCCTCATTTCACTTATCCTATGCTAATATGATAATCCAAAACTTGTTGCTTCTCATTTAACATTCTTTATGTTTTCTTGTAGGTAATCATGCTTAGAAGATTAGAGTTAGAATTTGTTTCCACGTGAAAAAAGGACTAGTTCTTTTTCCTTTCAAAGAGTAATTATTTATTGATCCCGCTTAGGGATTACACTGGGTATGTTGTTGTATGTGAAAGCTCATACTAGGGTATAGGAGAAGTAAAGAAGTTCTGCAAAAATACAGTTCTCTATGAACAACATCTAGTTAGTATAACTCTGTACTACCAGAGGTTTTATGTTCTCTCTTAAATTTACTAGAAACAACATATTTGCCTTAATTTGCATGAGAATACCTTTTTATCGGTAATTTGTATAACAGTATTATTCTCCCCTCGGAAACTCCATTCCTTTCTCTCCTATTACCCACATTTGGACAGACCAGGTTACATTCCTGCTCTCTATCTCCGTTTCCTTCTTTCTTCTAAAGCTCCAACTGAACATGAGATCTTTCCTTGTATATGCTATTGCCTACTGAACGCCAAAGGGATTCAATACTACGCACTTTAATCAACTTTCTAATGGGCAATGCGTGAGCAAGTGATCCACATCTGCGCAGGATTGTTTACACATATAGCACCAGCTATTTTGTCCTAACTTCCGTTTGCTCAAGTTCTCTGCAGTAAGGATGACTACCCTTGCTGTTGCTGGAAAACATACCTTCATCAGAGCTCTAGGAATCCAGATTGAGATCTGTGGGAGAATTATGTGTTTTCTTTTTAGTAGTCTGTCGTAGGACTACTTAAGTCCAAAATTCCTCATGCTTGCCCATTCCATAACTAAGAATTCTGACCTGTTGGTGTGATGTTTTGCTTTTAAATAGGTTGTGGAACTCACCTATCTCCCACAGCTGTAATGATCAAGTTGCTTAGTTTTGTTGTTACATTTCAGAGAGTAATATTGTTACTTTTTTGAGATCCGGAATGTATTAGGAAGACCTTGCTCAAAGTATCAACTCCGAAAAGCAAAAATGGAGGCATATTGGGAGTTAGGTGGTCTTAACTCTTAAGTGTCTATATGAAGCAAAATAACACCTTTAGATAGTTTTAAGAAAATATTGAGAAGCTTCTTTGATGGTTGAGTTCATTTATGTAATGTTTCCCGCTCTCATTTAAATCTAGTTTCCAAAAAAAAAAATCAAAATCCAAGCATCTTTTTTATGATGTTTTGGGTAGATGCTGGTGGTGGTGACTCCACTTAAAATGAGCTAAATTTATGTGAAAGGACAGCTCTCTTATGTCTTGAGAAAGTTGTTGTTGCATGATGTTGTTTGTTTTGCTTCTTTGTTATTTACTTGTTGAGATCTTGGCTTTCTGTAAGTAGCATGATGTTATCCTGAATTCCAAGAACACCTCTTATGACTCAGGCAACTAGGATGAGAGCTTCAGAAATGAAAAGTAGATGCTCAATGGCTTTGAACAGCGCAAACATTAGCAAAAATCGATACACTGATGTTCTGCCATGTATGCAGATCAGTTTCTATCAATTCTTCGATTGATGTTGAAGTTGTGTATTATAACCTGTGAATAATTATATCAAGCTTCATTCTTCTCAGTTGACAATAACAGGGTTGTTTTGGACCCACCAGCTAGAGGATATATAAATGCAAGCTTCATTAAGGTAGACTTCTACGTCCATTACTTGAAATTAGTTAAGCATGCTACTTGCTTTTGATACTCTCTTGGAAAATGTCAAGCTCTCTTCCACCAATCTGCTTCATGAGCATTATAATGCTCCTTTTTGCTGTAGATATCTGAAGACGTGTCTCAGTTTATTGCAACACAAGGTCCTCTACAACACACTTTTGAAGACTTCTGGGAAATGATAATCCAGCATCGCTGTCCTGTGATTGTGATGCTTACACAATTGTTTGACAACTACAAGGTATTCAACTGTTAAATTACGAGGTAAGCATTGTAATGTTAACAAGACAAGATATCTTGTTCTGTCATGTCACATGTGACAGAAAGAAAAAAATTGAGATTTTTTGTGACAAGGCTTCTGATCCAAAATTTGCTACCTAGGTAAAATTCTAACTTTTCTGCCTTTTTCATCTCTTGATTTTCATCCTCTGTTGTAATTAGATCTAGCATTTTTATACTTTCAGAAAGGTGCAACTGAACCTTTGATACTGTTTTTGCATTTTTTCTTGAGATACTTTGCCCCTTTACTATGTACTCTTCTATATTTTGAGTGGTGAGATAGGTTGGGGAAAAGAAACAGTAGAGAAAAAAAATATCTTAACCATCTCTTCTTGCTTGTCAATCTTTATTTCACACCTCTGTGTATAATTTCTTACACAGAAAGGAACAAACAGGTCGGTATTTTCAATATATATGCTACTACATCTTCTCGAAAAATAGAAAAAAGAAAAGTTTGGTGGTAAATGAATGCTCATTTTCTATCAGCATTCTTTTACATTAGGGGTGTCAAATGGGCGGGTTGGGTTGAAATTGGAAATATTACAATGGGCTGAATAGAAATCGGGTTGGGTCTTGACCCGCCCAAGTTTACGTTGGGCTCATATGGGTTGGGCTCAAATGGGTTGGGTCTTGACCCGCCCAATTTGACCCGATAAATCTCAATAATTTAACATATTATTATTTAACTTTTATAATCACAATTTGAATTTCTGCTCAAGATTTTTTTGTTAAAAAAGTAACAAATGGATAGATAATTCCTAAAAGATGTTGAATAGATAATAATTCATACCTTCAATACAGGAACATATCTTAATAAAAAAATTTAAACGGGTTGAAATTGGAGATTGAATTGGGCTCAATTGAGAATTCTCTTCAAATGGGTTAAGCTTGAATGGGTTGGGATTGAACCCATTTCAAATTATCTTGAGCCCAACCTTTAAAATTTTGTGCGGGTTGGCTGGGTTACCTATGTTTGATTTCATTTTTGACACCTATTTTACATCATCCTTTCTGGCCCTAATTCAAGCCGGAGGTTGTGGCTTTAAGGTCTGTTTAAATTTGATATAGTCATCACTGTCAATCTTTCTGCTAGTCATCACTCATCACTGGCAATCTTTCTGAGTAGGGAATGTTTCTCCTATAGACTATTTCAGAGCTTGGGCATATTTTGATGGAGTTGGTATAAGTAGACTTCTAGTGTGGTGCTTAAAGATATTATATGATCACTAGCTTGTGACTTCGTGATGAATATAAAGCTTGTAGGTGAATAACTTTTGCAGAAAATCAGCTTCTGTTGGGGAAGGTTCCAATTGAAGTTTATATTCCATCACGGGAAAAAGCCCTAGTTTTCCCTTCATATAAGCTTGGTAGATCATTTATCTATTTTTGTGGTCTTTCTCTAGTTTCAAAACTGTTATACTTGGATTTTGTTGGTTATTTAAACTGCAGAAGGATTAGCAAAGTCTAATGCAAAGGCCTGGCGGCTATTCTAGGATTGGAATTTGAGCTTAATAAGTTCTTCTTTCCCTTCTATCTTCCTAATACCCGATTAGCTGAGAAACAATTTCCTGGGCCAAATGGAAAAAAGGAAAATAAGAGACCTTGTTTCATGACCTTTATTCTGGATTATATTCAACTCTTCACACAAAGAGAGAGGCTACTAGTTTCCTTTCAATCACCCTGTATCACCTATTAACCTCTGAATGAATTTAAGCATTTATCTTAGTTGGTTTTTACTTCATTTGTAAGTGATTAAGCTGGTGATTGCGTCATTTTGACTATTTCATCTTTTCATCTTTATGAAAAATGCAATGCAGATTGTCAAGTGTGGGGATTATTTTC</genome_strand>
        <mrna_strand>AAAGCAGTGAAGTGAACATCCTACCACGGGGTGCGGACTGTCCATTCGGAATCGGAGGCAGATATCAGCGATGGCCACCGCCGGTAAACTCGTGTCGTCGTCGTCGTCGTCACCCAAGCCTTTCGATTTCTCCGACGATTCAGTTCCTAAGAGAGTCGTTCTGTCGAGTGATCAGCAGCGTTATTGCTTGGAAGTACTCAAAGTCTTCAAGGACAAGAGGTTTTCTGCTCCCGAAAAAATCCGCCAAGAGTTCATGACGTTGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTAGGATGAGAGCTTCAGAAATGAAAAGTAGATGCTCAATGGCTTTGAACAGCGCAAACATTAGCAAAAATCGATACACTGATGTTCTGCCAT............................................................................................TTGACAATAACAGGGTTGTTTTGGACCCACCAGCTAGAGGATATATAAATGCAAGCTTCATTAAG.................................................................................................................................ATATCTGAAGACGTGTCTCAGTTTATTGCAACACAAGGTCCTCTACAACACACTTTTGAAGACTTCTGGGAAATGATAATCCAGCATCGCTGTCCTGTGATTGTGATGCTTACACAATTGTTTGACAACTACAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTCAAGTGTGGGGATTATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268827" ref_strand="+" ref_description="SGN-E268827 [cLEM-4-B6]">
      <seq>tgaagtgaacatcctaccacggggtgcggactgtccattcggaatcggaggcagatatcagcgatggccaccgccggtaaactcgtgtcgtcgtcgtcgtcgtcacccaagcctttcgatttctccgacgattcagttcctaagagagtcgttctgtcgagtgatcagcagcgttattgcttggaagtactcaaagtcttcaaggacaagaggttttctgctcccgaaaaaatccgccaagagttcatgacgttgcaggcaactaggatgagagcttcagaaatgaaaagtagatgctcaatggctttgaacagcgcaaacattagcaaaaatcgatacactgatgttctgccatttgacaataacagggttgttttggacccaccagctagaggatatataaatgcaagcttcattaagatatctgaagacgtgtctcagtttattgcaacacaaggtcctctacaacacacttttgaagacttctgggaaatgataatccagcatcgctgtcctgtgattgtgatgcttacacaattgtttgacaactacaagattgtcaagtgtggggattattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90040" stop="83908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89740" g_stop="89483" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89482" i_stop="86606" i_length="2877">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.637" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86605" g_stop="86509" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="355" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86508" i_stop="86417" i_length="92">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86416" g_stop="86352" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="420" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86351" i_stop="86223" i_length="129">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86222" g_stop="86088" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="555" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86087" i_stop="84233" i_length="1855">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84232" g_stop="84208" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="580" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E268827" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89740" e_stop="89483"/>
          <exon e_start="86605" e_stop="86509"/>
          <exon e_start="86416" e_stop="86352"/>
          <exon e_start="86222" e_stop="86088"/>
          <exon e_start="84232" e_stop="84208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTGAACATCCTACCACGGGGTGCGGACTGTCCATTCGGAATCGGAGGCAGATATCAGCGATGGCCACCGCCGGTAAACTCGTGTCGTCGTCGTCGTCGTCACCCAAGCCTTTCGATTTCTCCGACGATTCAGTTCCTAAGAGAGTCGTTCTGTCGAGTGATCAGCAGCGTTATTGCTTGGAAGTACTCAAAGTCTTCAAGGACAAGAGGTTTTCTGCTCCCGAAAAAATCCGCCAAGAGTTCATGACGTTGCAGGTCCGTTTGCATTATACTCTCTTTCTTTCTCAATTTTATTGTTATTTAATGTTGTGCTTTTTCATAAAAGAGGAGGGTATTTATTCAATTGGTCAATTTTTTTGAAGAATATTTTCTCAAGTTACTCGAAGAATGATGAAAATAACTTCCAAAACAGGTTCTACAAGTGATGTGTACCTCTGTCTTTGAAGAAACAGAGGAGGGGGGCCAGTTTAGGAGTCTCATTTTTTTGATTCATTCATTCATAAGAGTGTATGATAAGAAAAAGTCCTCCAACACACCTCATCTTTACCTCCGTTATTTGTCTATATTATATACAAATGCTTTTAGTATAGTATATTTTGCTAAGTACTATACACGAGAAAATAAGTTACAAATCCACTTATTTCCTGGAAAACTATTTCCTTCATACAGAATACACCCGAAATGTTGAATTTGGGATATATGAGATGGATCCAAACAGAGTGAGATGGATATAAAGTATTCTTAGTCCATGTTCAACTAGTTAGGGAATATGGTGGAGTTGATTGACGTGTGATGATTATTTGATTTTTAGTTGGATATTCACAGTCATATTATCATATATCAATTAGAAAAACCAAGTCTTTCTATGCTAAGAATGAGTTGCTGTCGTCATTGGACTTTTCAACGTTTCTTCTTCACATAGGTGGTTCCATTCTTGGAAAATTGTGGTAGTTTGAATGCTTCAAACAGCAAATTCATTGGAACGTATTAAATGGTTCATATTAATCGATATGTATATAGAGGATTTATGCTATGGACTCCAGGTAATTTAGAATTAAGATTTAGTTGATAAATTGACTGATTGAAGTGTTGGTAAATTGTTTGAGTTCTAGTTGGATTTTTACTGTCATACTATTTTGAAAAGGGAAATCACTTACTCCTTGTAGGATGACTGTCAACCTTAACTAGGTGATAACATCATGAAGGCTTTAGGCATTTAATTCATTACGTCATATGAAATAGGCTGAAGTTAGTTGATCTTGAGCCGACTACTAGTAGTTAGGGATCGAGAAGTAGTTAACCGGTTGATTGATTGATTCAAAGTTTTGGGTGATATTGATGACGTCAATTTATTCGATTCAAACACAATACACATAACATTTTTCCAAAGTGGGAATATAACTAAGTTAAAGACTTAGCGCTTCTAATATTCTGACATATGCTATTTTGAAACATCTCCTACTGTGTTCAATCATAATTTTAAGCTCTCAGCATTAGCATGTGTTGTAGTATGTTTTACAGGATTCTACAATCTATACCATATCGCTAGCCTTTCCTCTCTGAATTTGTACATCTTTTCACTACAATTAGTGTCTCCTTGAGATATAGCATCTTTTTTTTTTTCGATTGGTAAAAGTAATTTGATTCAACAAAATGCTCTTTCTGGTATAGAATTTTTGCAGCATTCTTCCCCTCATTTCACTTATCCTATGCTAATATGATAATCCAAAACTTGTTGCTTCTCATTTAACATTCTTTATGTTTTCTTGTAGGTAATCATGCTTAGAAGATTAGAGTTAGAATTTGTTTCCACGTGAAAAAAGGACTAGTTCTTTTTCCTTTCAAAGAGTAATTATTTATTGATCCCGCTTAGGGATTACACTGGGTATGTTGTTGTATGTGAAAGCTCATACTAGGGTATAGGAGAAGTAAAGAAGTTCTGCAAAAATACAGTTCTCTATGAACAACATCTAGTTAGTATAACTCTGTACTACCAGAGGTTTTATGTTCTCTCTTAAATTTACTAGAAACAACATATTTGCCTTAATTTGCATGAGAATACCTTTTTATCGGTAATTTGTATAACAGTATTATTCTCCCCTCGGAAACTCCATTCCTTTCTCTCCTATTACCCACATTTGGACAGACCAGGTTACATTCCTGCTCTCTATCTCCGTTTCCTTCTTTCTTCTAAAGCTCCAACTGAACATGAGATCTTTCCTTGTATATGCTATTGCCTACTGAACGCCAAAGGGATTCAATACTACGCACTTTAATCAACTTTCTAATGGGCAATGCGTGAGCAAGTGATCCACATCTGCGCAGGATTGTTTACACATATAGCACCAGCTATTTTGTCCTAACTTCCGTTTGCTCAAGTTCTCTGCAGTAAGGATGACTACCCTTGCTGTTGCTGGAAAACATACCTTCATCAGAGCTCTAGGAATCCAGATTGAGATCTGTGGGAGAATTATGTGTTTTCTTTTTAGTAGTCTGTCGTAGGACTACTTAAGTCCAAAATTCCTCATGCTTGCCCATTCCATAACTAAGAATTCTGACCTGTTGGTGTGATGTTTTGCTTTTAAATAGGTTGTGGAACTCACCTATCTCCCACAGCTGTAATGATCAAGTTGCTTAGTTTTGTTGTTACATTTCAGAGAGTAATATTGTTACTTTTTTGAGATCCGGAATGTATTAGGAAGACCTTGCTCAAAGTATCAACTCCGAAAAGCAAAAATGGAGGCATATTGGGAGTTAGGTGGTCTTAACTCTTAAGTGTCTATATGAAGCAAAATAACACCTTTAGATAGTTTTAAGAAAATATTGAGAAGCTTCTTTGATGGTTGAGTTCATTTATGTAATGTTTCCCGCTCTCATTTAAATCTAGTTTCCAAAAAAAAAAATCAAAATCCAAGCATCTTTTTTATGATGTTTTGGGTAGATGCTGGTGGTGGTGACTCCACTTAAAATGAGCTAAATTTATGTGAAAGGACAGCTCTCTTATGTCTTGAGAAAGTTGTTGTTGCATGATGTTGTTTGTTTTGCTTCTTTGTTATTTACTTGTTGAGATCTTGGCTTTCTGTAAGTAGCATGATGTTATCCTGAATTCCAAGAACACCTCTTATGACTCAGGCAACTAGGATGAGAGCTTCAGAAATGAAAAGTAGATGCTCAATGGCTTTGAACAGCGCAAACATTAGCAAAAATCGATACACTGATGTTCTGCCATGTATGCAGATCAGTTTCTATCAATTCTTCGATTGATGTTGAAGTTGTGTATTATAACCTGTGAATAATTATATCAAGCTTCATTCTTCTCAGTTGACAATAACAGGGTTGTTTTGGACCCACCAGCTAGAGGATATATAAATGCAAGCTTCATTAAGGTAGACTTCTACGTCCATTACTTGAAATTAGTTAAGCATGCTACTTGCTTTTGATACTCTCTTGGAAAATGTCAAGCTCTCTTCCACCAATCTGCTTCATGAGCATTATAATGCTCCTTTTTGCTGTAGATATCTGAAGACGTGTCTCAGTTTATTGCAACACAAGGTCCTCTACAACACACTTTTGAAGACTTCTGGGAAATGATAATCCAGCATCGCTGTCCTGTGATTGTGATGCTTACACAATTGTTTGACAACTACAAGGTATTCAACTGTTAAATTACGAGGTAAGCATTGTAATGTTAACAAGACAAGATATCTTGTTCTGTCATGTCACATGTGACAGAAAGAAAAAAATTGAGATTTTTTGTGACAAGGCTTCTGATCCAAAATTTGCTACCTAGGTAAAATTCTAACTTTTCTGCCTTTTTCATCTCTTGATTTTCATCCTCTGTTGTAATTAGATCTAGCATTTTTATACTTTCAGAAAGGTGCAACTGAACCTTTGATACTGTTTTTGCATTTTTTCTTGAGATACTTTGCCCCTTTACTATGTACTCTTCTATATTTTGAGTGGTGAGATAGGTTGGGGAAAAGAAACAGTAGAGAAAAAAAATATCTTAACCATCTCTTCTTGCTTGTCAATCTTTATTTCACACCTCTGTGTATAATTTCTTACACAGAAAGGAACAAACAGGTCGGTATTTTCAATATATATGCTACTACATCTTCTCGAAAAATAGAAAAAAGAAAAGTTTGGTGGTAAATGAATGCTCATTTTCTATCAGCATTCTTTTACATTAGGGGTGTCAAATGGGCGGGTTGGGTTGAAATTGGAAATATTACAATGGGCTGAATAGAAATCGGGTTGGGTCTTGACCCGCCCAAGTTTACGTTGGGCTCATATGGGTTGGGCTCAAATGGGTTGGGTCTTGACCCGCCCAATTTGACCCGATAAATCTCAATAATTTAACATATTATTATTTAACTTTTATAATCACAATTTGAATTTCTGCTCAAGATTTTTTTGTTAAAAAAGTAACAAATGGATAGATAATTCCTAAAAGATGTTGAATAGATAATAATTCATACCTTCAATACAGGAACATATCTTAATAAAAAAATTTAAACGGGTTGAAATTGGAGATTGAATTGGGCTCAATTGAGAATTCTCTTCAAATGGGTTAAGCTTGAATGGGTTGGGATTGAACCCATTTCAAATTATCTTGAGCCCAACCTTTAAAATTTTGTGCGGGTTGGCTGGGTTACCTATGTTTGATTTCATTTTTGACACCTATTTTACATCATCCTTTCTGGCCCTAATTCAAGCCGGAGGTTGTGGCTTTAAGGTCTGTTTAAATTTGATATAGTCATCACTGTCAATCTTTCTGCTAGTCATCACTCATCACTGGCAATCTTTCTGAGTAGGGAATGTTTCTCCTATAGACTATTTCAGAGCTTGGGCATATTTTGATGGAGTTGGTATAAGTAGACTTCTAGTGTGGTGCTTAAAGATATTATATGATCACTAGCTTGTGACTTCGTGATGAATATAAAGCTTGTAGGTGAATAACTTTTGCAGAAAATCAGCTTCTGTTGGGGAAGGTTCCAATTGAAGTTTATATTCCATCACGGGAAAAAGCCCTAGTTTTCCCTTCATATAAGCTTGGTAGATCATTTATCTATTTTTGTGGTCTTTCTCTAGTTTCAAAACTGTTATACTTGGATTTTGTTGGTTATTTAAACTGCAGAAGGATTAGCAAAGTCTAATGCAAAGGCCTGGCGGCTATTCTAGGATTGGAATTTGAGCTTAATAAGTTCTTCTTTCCCTTCTATCTTCCTAATACCCGATTAGCTGAGAAACAATTTCCTGGGCCAAATGGAAAAAAGGAAAATAAGAGACCTTGTTTCATGACCTTTATTCTGGATTATATTCAACTCTTCACACAAAGAGAGAGGCTACTAGTTTCCTTTCAATCACCCTGTATCACCTATTAACCTCTGAATGAATTTAAGCATTTATCTTAGTTGGTTTTTACTTCATTTGTAAGTGATTAAGCTGGTGATTGCGTCATTTTGACTATTTCATCTTTTCATCTTTATGAAAAATGCAATGCAGATTGTCAAGTGTGGGGATTATTTTC</genome_strand>
        <mrna_strand>TGAAGTGAACATCCTACCACGGGGTGCGGACTGTCCATTCGGAATCGGAGGCAGATATCAGCGATGGCCACCGCCGGTAAACTCGTGTCGTCGTCGTCGTCGTCACCCAAGCCTTTCGATTTCTCCGACGATTCAGTTCCTAAGAGAGTCGTTCTGTCGAGTGATCAGCAGCGTTATTGCTTGGAAGTACTCAAAGTCTTCAAGGACAAGAGGTTTTCTGCTCCCGAAAAAATCCGCCAAGAGTTCATGACGTTGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTAGGATGAGAGCTTCAGAAATGAAAAGTAGATGCTCAATGGCTTTGAACAGCGCAAACATTAGCAAAAATCGATACACTGATGTTCTGCCAT............................................................................................TTGACAATAACAGGGTTGTTTTGGACCCACCAGCTAGAGGATATATAAATGCAAGCTTCATTAAG.................................................................................................................................ATATCTGAAGACGTGTCTCAGTTTATTGCAACACAAGGTCCTCTACAACACACTTTTGAAGACTTCTGGGAAATGATAATCCAGCATCGCTGTCCTGTGATTGTGATGCTTACACAATTGTTTGACAACTACAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTCAAGTGTGGGGATTATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287151" ref_strand="+" ref_description="SGN-E287151 [cLES-6-B9]">
      <seq>gaaagtgcgtacaaagaaagcagtgaagtgaacatcctaccacggggtgcggactgtccattcggaatcggaggcagatatcagcgatggccaccgccggtaaactcgtgtcgtcgtcgtcgtcgtcacccaagcctttcgatttctccgacgattcagttcctaagagagtcgttctgtcgagtgatcagcagcgttattgcttggaagtactcaaagtcttcaaggacaagaggttttctgctcccgaaaaaatccgccaagagttcatgacgttgcaggcaactaggatgagagcttcagaaatgaaaagtagatgctcaatggctttgaacagcgcaaacattagcaaaaatcgatacactgatgttctgccatttgacaataacagggttgttttggacccaccagctagaggatatataaatgcaagcttcattaagatatctgaagacgtgtctcagtttattgcaacacaaggtcctctacaacacacttttgaagacttctgggaaatgataatccagcatcgctgtcctgtgattgtgatgcttacacaattgtttgacaactacaagattgtcaagtgtggggattattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90063" stop="83910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89763" g_stop="89483" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89482" i_stop="86606" i_length="2877">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.637" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86605" g_stop="86509" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="378" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86508" i_stop="86417" i_length="92">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86416" g_stop="86352" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="443" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86351" i_stop="86223" i_length="129">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86222" g_stop="86088" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="578" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86087" i_stop="84233" i_length="1855">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84232" g_stop="84210" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="601" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E287151" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89763" e_stop="89483"/>
          <exon e_start="86605" e_stop="86509"/>
          <exon e_start="86416" e_stop="86352"/>
          <exon e_start="86222" e_stop="86088"/>
          <exon e_start="84232" e_stop="84210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGTGCGTACAAAGAAAGCAGTGAAGTGAACATCCTACCACGGGGTGCGGACTGTCCATTCGGAATCGGAGGCAGATATCAGCGATGGCCACCGCCGGTAAACTCGTGTCGTCGTCGTCGTCGTCACCCAAGCCTTTCGATTTCTCCGACGATTCAGTTCCTAAGAGAGTCGTTCTGTCGAGTGATCAGCAGCGTTATTGCTTGGAAGTACTCAAAGTCTTCAAGGACAAGAGGTTTTCTGCTCCCGAAAAAATCCGCCAAGAGTTCATGACGTTGCAGGTCCGTTTGCATTATACTCTCTTTCTTTCTCAATTTTATTGTTATTTAATGTTGTGCTTTTTCATAAAAGAGGAGGGTATTTATTCAATTGGTCAATTTTTTTGAAGAATATTTTCTCAAGTTACTCGAAGAATGATGAAAATAACTTCCAAAACAGGTTCTACAAGTGATGTGTACCTCTGTCTTTGAAGAAACAGAGGAGGGGGGCCAGTTTAGGAGTCTCATTTTTTTGATTCATTCATTCATAAGAGTGTATGATAAGAAAAAGTCCTCCAACACACCTCATCTTTACCTCCGTTATTTGTCTATATTATATACAAATGCTTTTAGTATAGTATATTTTGCTAAGTACTATACACGAGAAAATAAGTTACAAATCCACTTATTTCCTGGAAAACTATTTCCTTCATACAGAATACACCCGAAATGTTGAATTTGGGATATATGAGATGGATCCAAACAGAGTGAGATGGATATAAAGTATTCTTAGTCCATGTTCAACTAGTTAGGGAATATGGTGGAGTTGATTGACGTGTGATGATTATTTGATTTTTAGTTGGATATTCACAGTCATATTATCATATATCAATTAGAAAAACCAAGTCTTTCTATGCTAAGAATGAGTTGCTGTCGTCATTGGACTTTTCAACGTTTCTTCTTCACATAGGTGGTTCCATTCTTGGAAAATTGTGGTAGTTTGAATGCTTCAAACAGCAAATTCATTGGAACGTATTAAATGGTTCATATTAATCGATATGTATATAGAGGATTTATGCTATGGACTCCAGGTAATTTAGAATTAAGATTTAGTTGATAAATTGACTGATTGAAGTGTTGGTAAATTGTTTGAGTTCTAGTTGGATTTTTACTGTCATACTATTTTGAAAAGGGAAATCACTTACTCCTTGTAGGATGACTGTCAACCTTAACTAGGTGATAACATCATGAAGGCTTTAGGCATTTAATTCATTACGTCATATGAAATAGGCTGAAGTTAGTTGATCTTGAGCCGACTACTAGTAGTTAGGGATCGAGAAGTAGTTAACCGGTTGATTGATTGATTCAAAGTTTTGGGTGATATTGATGACGTCAATTTATTCGATTCAAACACAATACACATAACATTTTTCCAAAGTGGGAATATAACTAAGTTAAAGACTTAGCGCTTCTAATATTCTGACATATGCTATTTTGAAACATCTCCTACTGTGTTCAATCATAATTTTAAGCTCTCAGCATTAGCATGTGTTGTAGTATGTTTTACAGGATTCTACAATCTATACCATATCGCTAGCCTTTCCTCTCTGAATTTGTACATCTTTTCACTACAATTAGTGTCTCCTTGAGATATAGCATCTTTTTTTTTTTCGATTGGTAAAAGTAATTTGATTCAACAAAATGCTCTTTCTGGTATAGAATTTTTGCAGCATTCTTCCCCTCATTTCACTTATCCTATGCTAATATGATAATCCAAAACTTGTTGCTTCTCATTTAACATTCTTTATGTTTTCTTGTAGGTAATCATGCTTAGAAGATTAGAGTTAGAATTTGTTTCCACGTGAAAAAAGGACTAGTTCTTTTTCCTTTCAAAGAGTAATTATTTATTGATCCCGCTTAGGGATTACACTGGGTATGTTGTTGTATGTGAAAGCTCATACTAGGGTATAGGAGAAGTAAAGAAGTTCTGCAAAAATACAGTTCTCTATGAACAACATCTAGTTAGTATAACTCTGTACTACCAGAGGTTTTATGTTCTCTCTTAAATTTACTAGAAACAACATATTTGCCTTAATTTGCATGAGAATACCTTTTTATCGGTAATTTGTATAACAGTATTATTCTCCCCTCGGAAACTCCATTCCTTTCTCTCCTATTACCCACATTTGGACAGACCAGGTTACATTCCTGCTCTCTATCTCCGTTTCCTTCTTTCTTCTAAAGCTCCAACTGAACATGAGATCTTTCCTTGTATATGCTATTGCCTACTGAACGCCAAAGGGATTCAATACTACGCACTTTAATCAACTTTCTAATGGGCAATGCGTGAGCAAGTGATCCACATCTGCGCAGGATTGTTTACACATATAGCACCAGCTATTTTGTCCTAACTTCCGTTTGCTCAAGTTCTCTGCAGTAAGGATGACTACCCTTGCTGTTGCTGGAAAACATACCTTCATCAGAGCTCTAGGAATCCAGATTGAGATCTGTGGGAGAATTATGTGTTTTCTTTTTAGTAGTCTGTCGTAGGACTACTTAAGTCCAAAATTCCTCATGCTTGCCCATTCCATAACTAAGAATTCTGACCTGTTGGTGTGATGTTTTGCTTTTAAATAGGTTGTGGAACTCACCTATCTCCCACAGCTGTAATGATCAAGTTGCTTAGTTTTGTTGTTACATTTCAGAGAGTAATATTGTTACTTTTTTGAGATCCGGAATGTATTAGGAAGACCTTGCTCAAAGTATCAACTCCGAAAAGCAAAAATGGAGGCATATTGGGAGTTAGGTGGTCTTAACTCTTAAGTGTCTATATGAAGCAAAATAACACCTTTAGATAGTTTTAAGAAAATATTGAGAAGCTTCTTTGATGGTTGAGTTCATTTATGTAATGTTTCCCGCTCTCATTTAAATCTAGTTTCCAAAAAAAAAAATCAAAATCCAAGCATCTTTTTTATGATGTTTTGGGTAGATGCTGGTGGTGGTGACTCCACTTAAAATGAGCTAAATTTATGTGAAAGGACAGCTCTCTTATGTCTTGAGAAAGTTGTTGTTGCATGATGTTGTTTGTTTTGCTTCTTTGTTATTTACTTGTTGAGATCTTGGCTTTCTGTAAGTAGCATGATGTTATCCTGAATTCCAAGAACACCTCTTATGACTCAGGCAACTAGGATGAGAGCTTCAGAAATGAAAAGTAGATGCTCAATGGCTTTGAACAGCGCAAACATTAGCAAAAATCGATACACTGATGTTCTGCCATGTATGCAGATCAGTTTCTATCAATTCTTCGATTGATGTTGAAGTTGTGTATTATAACCTGTGAATAATTATATCAAGCTTCATTCTTCTCAGTTGACAATAACAGGGTTGTTTTGGACCCACCAGCTAGAGGATATATAAATGCAAGCTTCATTAAGGTAGACTTCTACGTCCATTACTTGAAATTAGTTAAGCATGCTACTTGCTTTTGATACTCTCTTGGAAAATGTCAAGCTCTCTTCCACCAATCTGCTTCATGAGCATTATAATGCTCCTTTTTGCTGTAGATATCTGAAGACGTGTCTCAGTTTATTGCAACACAAGGTCCTCTACAACACACTTTTGAAGACTTCTGGGAAATGATAATCCAGCATCGCTGTCCTGTGATTGTGATGCTTACACAATTGTTTGACAACTACAAGGTATTCAACTGTTAAATTACGAGGTAAGCATTGTAATGTTAACAAGACAAGATATCTTGTTCTGTCATGTCACATGTGACAGAAAGAAAAAAATTGAGATTTTTTGTGACAAGGCTTCTGATCCAAAATTTGCTACCTAGGTAAAATTCTAACTTTTCTGCCTTTTTCATCTCTTGATTTTCATCCTCTGTTGTAATTAGATCTAGCATTTTTATACTTTCAGAAAGGTGCAACTGAACCTTTGATACTGTTTTTGCATTTTTTCTTGAGATACTTTGCCCCTTTACTATGTACTCTTCTATATTTTGAGTGGTGAGATAGGTTGGGGAAAAGAAACAGTAGAGAAAAAAAATATCTTAACCATCTCTTCTTGCTTGTCAATCTTTATTTCACACCTCTGTGTATAATTTCTTACACAGAAAGGAACAAACAGGTCGGTATTTTCAATATATATGCTACTACATCTTCTCGAAAAATAGAAAAAAGAAAAGTTTGGTGGTAAATGAATGCTCATTTTCTATCAGCATTCTTTTACATTAGGGGTGTCAAATGGGCGGGTTGGGTTGAAATTGGAAATATTACAATGGGCTGAATAGAAATCGGGTTGGGTCTTGACCCGCCCAAGTTTACGTTGGGCTCATATGGGTTGGGCTCAAATGGGTTGGGTCTTGACCCGCCCAATTTGACCCGATAAATCTCAATAATTTAACATATTATTATTTAACTTTTATAATCACAATTTGAATTTCTGCTCAAGATTTTTTTGTTAAAAAAGTAACAAATGGATAGATAATTCCTAAAAGATGTTGAATAGATAATAATTCATACCTTCAATACAGGAACATATCTTAATAAAAAAATTTAAACGGGTTGAAATTGGAGATTGAATTGGGCTCAATTGAGAATTCTCTTCAAATGGGTTAAGCTTGAATGGGTTGGGATTGAACCCATTTCAAATTATCTTGAGCCCAACCTTTAAAATTTTGTGCGGGTTGGCTGGGTTACCTATGTTTGATTTCATTTTTGACACCTATTTTACATCATCCTTTCTGGCCCTAATTCAAGCCGGAGGTTGTGGCTTTAAGGTCTGTTTAAATTTGATATAGTCATCACTGTCAATCTTTCTGCTAGTCATCACTCATCACTGGCAATCTTTCTGAGTAGGGAATGTTTCTCCTATAGACTATTTCAGAGCTTGGGCATATTTTGATGGAGTTGGTATAAGTAGACTTCTAGTGTGGTGCTTAAAGATATTATATGATCACTAGCTTGTGACTTCGTGATGAATATAAAGCTTGTAGGTGAATAACTTTTGCAGAAAATCAGCTTCTGTTGGGGAAGGTTCCAATTGAAGTTTATATTCCATCACGGGAAAAAGCCCTAGTTTTCCCTTCATATAAGCTTGGTAGATCATTTATCTATTTTTGTGGTCTTTCTCTAGTTTCAAAACTGTTATACTTGGATTTTGTTGGTTATTTAAACTGCAGAAGGATTAGCAAAGTCTAATGCAAAGGCCTGGCGGCTATTCTAGGATTGGAATTTGAGCTTAATAAGTTCTTCTTTCCCTTCTATCTTCCTAATACCCGATTAGCTGAGAAACAATTTCCTGGGCCAAATGGAAAAAAGGAAAATAAGAGACCTTGTTTCATGACCTTTATTCTGGATTATATTCAACTCTTCACACAAAGAGAGAGGCTACTAGTTTCCTTTCAATCACCCTGTATCACCTATTAACCTCTGAATGAATTTAAGCATTTATCTTAGTTGGTTTTTACTTCATTTGTAAGTGATTAAGCTGGTGATTGCGTCATTTTGACTATTTCATCTTTTCATCTTTATGAAAAATGCAATGCAGATTGTCAAGTGTGGGGATTATTT</genome_strand>
        <mrna_strand>GAAAGTGCGTACAAAGAAAGCAGTGAAGTGAACATCCTACCACGGGGTGCGGACTGTCCATTCGGAATCGGAGGCAGATATCAGCGATGGCCACCGCCGGTAAACTCGTGTCGTCGTCGTCGTCGTCACCCAAGCCTTTCGATTTCTCCGACGATTCAGTTCCTAAGAGAGTCGTTCTGTCGAGTGATCAGCAGCGTTATTGCTTGGAAGTACTCAAAGTCTTCAAGGACAAGAGGTTTTCTGCTCCCGAAAAAATCCGCCAAGAGTTCATGACGTTGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTAGGATGAGAGCTTCAGAAATGAAAAGTAGATGCTCAATGGCTTTGAACAGCGCAAACATTAGCAAAAATCGATACACTGATGTTCTGCCAT............................................................................................TTGACAATAACAGGGTTGTTTTGGACCCACCAGCTAGAGGATATATAAATGCAAGCTTCATTAAG.................................................................................................................................ATATCTGAAGACGTGTCTCAGTTTATTGCAACACAAGGTCCTCTACAACACACTTTTGAAGACTTCTGGGAAATGATAATCCAGCATCGCTGTCCTGTGATTGTGATGCTTACACAATTGTTTGACAACTACAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTCAAGTGTGGGGATTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201537" ref_strand="+" ref_description="SGN-E201537 [cLEC-4-B10]">
      <seq>aagcttgtaggtgaataacttttgcagaaaatcagcttctgttggggaaggttccaattgaagtttatattccatcacgggaaaaagccctagttttcccttcatataagcttggtagatcatttatctatttttgtggtctttctctagtttcaaaactgttatacttggattttgttggttatttaaactgcagaaggattagcaaagtctaatgcaaaggcctggcggctattctaggattggaatttgagcttaataagttcttctttcccttctatcttcctaatacccgattagctgagaaacaatttcctgggccaaatggaaaaaaggaaaataagagaccttgtttcatgacctttattctggattatattcaactcttcacacaaagagagaggctactagtttcctttcaatcaccctgtatcacctattaacctctgaatgaatttaagcatttatcttagttgggttttacttcatttgtaagtgattaaactggtgattgcgtcattttgactatttcatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85096" stop="83960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84796" g_stop="84260" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="537" r_length="537" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E201537" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84796" e_stop="84260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTGTAGGTGAATAACTTTTGCAGAAAATCAGCTTCTGTTGGGGAAGGTTCCAATTGAAGTTTATATTCCATCACGGGAAAAAGCCCTAGTTTTCCCTTCATATAAGCTTGGTAGATCATTTATCTATTTTTGTGGTCTTTCTCTAGTTTCAAAACTGTTATACTTGGATTTTGTTGGTTATTTAAACTGCAGAAGGATTAGCAAAGTCTAATGCAAAGGCCTGGCGGCTATTCTAGGATTGGAATTTGAGCTTAATAAGTTCTTCTTTCCCTTCTATCTTCCTAATACCCGATTAGCTGAGAAACAATTTCCTGGGCCAAATGGAAAAAAGGAAAATAAGAGACCTTGTTTCATGACCTTTATTCTGGATTATATTCAACTCTTCACACAAAGAGAGAGGCTACTAGTTTCCTTTCAATCACCCTGTATCACCTATTAACCTCTGAATGAATTTAAGCATTTATCTTAGTTGGTTTTTACTTCATTTGTAAGTGATTAAGCTGGTGATTGCGTCATTTTGACTATTTCATCTT</genome_strand>
        <mrna_strand>AAGCTTGTAGGTGAATAACTTTTGCAGAAAATCAGCTTCTGTTGGGGAAGGTTCCAATTGAAGTTTATATTCCATCACGGGAAAAAGCCCTAGTTTTCCCTTCATATAAGCTTGGTAGATCATTTATCTATTTTTGTGGTCTTTCTCTAGTTTCAAAACTGTTATACTTGGATTTTGTTGGTTATTTAAACTGCAGAAGGATTAGCAAAGTCTAATGCAAAGGCCTGGCGGCTATTCTAGGATTGGAATTTGAGCTTAATAAGTTCTTCTTTCCCTTCTATCTTCCTAATACCCGATTAGCTGAGAAACAATTTCCTGGGCCAAATGGAAAAAAGGAAAATAAGAGACCTTGTTTCATGACCTTTATTCTGGATTATATTCAACTCTTCACACAAAGAGAGAGGCTACTAGTTTCCTTTCAATCACCCTGTATCACCTATTAACCTCTGAATGAATTTAAGCATTTATCTTAGTTGGGTTTTACTTCATTTGTAAGTGATTAAACTGGTGATTGCGTCATTTTGACTATTTCATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321979" ref_strand="+" ref_description="SGN-E321979 [cTOB-29-B7]">
      <seq>tggctttaaggactgtttaaatttgatatatgcatcactgtcaatctttctgctagtcatcactcatcactggcaatctttctgagtagggaatgtttctcctatagactatttcagagcttgggcatattttgatggagttggtataagtatacttctactggggcgcttatagatattatatgatcactagcttgtgacttcgtgatgaatataaagcttgtatgtgaataacttttgcataaaatcagcttctgttggggaaggttccaattgaagtttatattccatcacgggaaaaagccctagatttcccttcatataagcttggtagatcatttatctatttttgtggtctttctctaatttcaaaactggtatacttggattttgttggttatttaaactgcacaaggattatcgaagtctaatgcaaaggcctggcggctattctaggattggaatttgagcttaataagttcttctttcccttctatcttcctaatacccgattagctgagaaacgatttcctgagccaaatggaaaaaatgaaaataagagaccttgtttcatgacctttattctggattatattcaactcttcacacgaagagagaggctactagtttcgtttcaatcaccctgtatcacctattaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85312" stop="84051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85012" g_stop="84351" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="662" r_length="662" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E321979" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85012" e_stop="84351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTTTAAGGTCTGTTTAAATTTGATATAGTCATCACTGTCAATCTTTCTGCTAGTCATCACTCATCACTGGCAATCTTTCTGAGTAGGGAATGTTTCTCCTATAGACTATTTCAGAGCTTGGGCATATTTTGATGGAGTTGGTATAAGTAGACTTCTAGTGTGGTGCTTAAAGATATTATATGATCACTAGCTTGTGACTTCGTGATGAATATAAAGCTTGTAGGTGAATAACTTTTGCAGAAAATCAGCTTCTGTTGGGGAAGGTTCCAATTGAAGTTTATATTCCATCACGGGAAAAAGCCCTAGTTTTCCCTTCATATAAGCTTGGTAGATCATTTATCTATTTTTGTGGTCTTTCTCTAGTTTCAAAACTGTTATACTTGGATTTTGTTGGTTATTTAAACTGCAGAAGGATTAGCAAAGTCTAATGCAAAGGCCTGGCGGCTATTCTAGGATTGGAATTTGAGCTTAATAAGTTCTTCTTTCCCTTCTATCTTCCTAATACCCGATTAGCTGAGAAACAATTTCCTGGGCCAAATGGAAAAAAGGAAAATAAGAGACCTTGTTTCATGACCTTTATTCTGGATTATATTCAACTCTTCACACAAAGAGAGAGGCTACTAGTTTCCTTTCAATCACCCTGTATCACCTATTAACCT</genome_strand>
        <mrna_strand>TGGCTTTAAGGACTGTTTAAATTTGATATATGCATCACTGTCAATCTTTCTGCTAGTCATCACTCATCACTGGCAATCTTTCTGAGTAGGGAATGTTTCTCCTATAGACTATTTCAGAGCTTGGGCATATTTTGATGGAGTTGGTATAAGTATACTTCTACTGGGGCGCTTATAGATATTATATGATCACTAGCTTGTGACTTCGTGATGAATATAAAGCTTGTATGTGAATAACTTTTGCATAAAATCAGCTTCTGTTGGGGAAGGTTCCAATTGAAGTTTATATTCCATCACGGGAAAAAGCCCTAGATTTCCCTTCATATAAGCTTGGTAGATCATTTATCTATTTTTGTGGTCTTTCTCTAATTTCAAAACTGGTATACTTGGATTTTGTTGGTTATTTAAACTGCACAAGGATTATCGAAGTCTAATGCAAAGGCCTGGCGGCTATTCTAGGATTGGAATTTGAGCTTAATAAGTTCTTCTTTCCCTTCTATCTTCCTAATACCCGATTAGCTGAGAAACGATTTCCTGAGCCAAATGGAAAAAATGAAAATAAGAGACCTTGTTTCATGACCTTTATTCTGGATTATATTCAACTCTTCACACGAAGAGAGAGGCTACTAGTTTCGTTTCAATCACCCTGTATCACCTATTAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298039" ref_strand="+" ref_description="SGN-E298039 [cLEW-12-A20]">
      <seq>ttgaattgggctcaattgagaattctcttcaaatgggttaagcttgaatgggttgggattgaacccatttcaaattatcttgagcccaacctttaaaattttgtgcgggttggctgggttacctatgtttgatttcatttttgacacctattttacatcatcctttctggccctaattcaagccggaggttgtggctttaaggtctgtttaaatttgatatagtcatcactgtcaatctttctgctagtcatcactcatcactggcaatctttctgagtagggaatgtttctcctatagactatttcagagcttgggcatattttgatggagttggtataagtagacttctagtgtggtgcttaaagatattatatgatcactagcttgtgacttcgtgatgaatataaagcttgtaggtgaataacttttgcagaaaatcagcttctgttggggaaggttccaattgaagtttatattccatcacgggaaaaagccctagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85504" stop="84401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85204" g_stop="84701" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E298039" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85204" e_stop="84701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAATTGGGCTCAATTGAGAATTCTCTTCAAATGGGTTAAGCTTGAATGGGTTGGGATTGAACCCATTTCAAATTATCTTGAGCCCAACCTTTAAAATTTTGTGCGGGTTGGCTGGGTTACCTATGTTTGATTTCATTTTTGACACCTATTTTACATCATCCTTTCTGGCCCTAATTCAAGCCGGAGGTTGTGGCTTTAAGGTCTGTTTAAATTTGATATAGTCATCACTGTCAATCTTTCTGCTAGTCATCACTCATCACTGGCAATCTTTCTGAGTAGGGAATGTTTCTCCTATAGACTATTTCAGAGCTTGGGCATATTTTGATGGAGTTGGTATAAGTAGACTTCTAGTGTGGTGCTTAAAGATATTATATGATCACTAGCTTGTGACTTCGTGATGAATATAAAGCTTGTAGGTGAATAACTTTTGCAGAAAATCAGCTTCTGTTGGGGAAGGTTCCAATTGAAGTTTATATTCCATCACGGGAAAAAGCCCTAGTTT</genome_strand>
        <mrna_strand>TTGAATTGGGCTCAATTGAGAATTCTCTTCAAATGGGTTAAGCTTGAATGGGTTGGGATTGAACCCATTTCAAATTATCTTGAGCCCAACCTTTAAAATTTTGTGCGGGTTGGCTGGGTTACCTATGTTTGATTTCATTTTTGACACCTATTTTACATCATCCTTTCTGGCCCTAATTCAAGCCGGAGGTTGTGGCTTTAAGGTCTGTTTAAATTTGATATAGTCATCACTGTCAATCTTTCTGCTAGTCATCACTCATCACTGGCAATCTTTCTGAGTAGGGAATGTTTCTCCTATAGACTATTTCAGAGCTTGGGCATATTTTGATGGAGTTGGTATAAGTAGACTTCTAGTGTGGTGCTTAAAGATATTATATGATCACTAGCTTGTGACTTCGTGATGAATATAAAGCTTGTAGGTGAATAACTTTTGCAGAAAATCAGCTTCTGTTGGGGAAGGTTCCAATTGAAGTTTATATTCCATCACGGGAAAAAGCCCTAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334329" ref_strand="+" ref_description="SGN-E334329 [cTOD-21-O4]">
      <seq>tccattcggaatcggaggcagatatcagcgatggccaccgccggtaaactcgtgtcgtcgtcgtcgtcgtcacccaagcctttcgatttctccgacgattcagttcctaagagagtcgttctgtcgagtgatcagcagcgttattgcttggaagtactcaaagtcttcaaggacaagaggttttctgctcccgaaaaaatccgccaagagttcatgacgttgcagttgacaataacagggttgttttggacccaccagctagaggatatataaatgcaagcttcattaagatatctgaagacgtgtctcagtttattgcaacacaaggtcctctacaacacacttttgaagacttctgggaaatgataatccagcatcgctgtcctgtgattgtgatgcttacacaattgtttgacaactacaaggtattcaactgttaaattacgaggtaagcattgtaatgttaacaagacaagatatcttgttctgtcatgtcacatgtgacagaaagaaaaaaattgagattttttgtgacaaggcttctgatccaaaatttgctacctaggtaaaattctaacttttctgcctttttcatctcttgattttcatcctctgttgtaattagatctagcatttttatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90007" stop="85569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89707" g_stop="89483" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89482" i_stop="86417" i_length="3066">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86416" g_stop="86352" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="290" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86351" i_stop="86223" i_length="129">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86222" g_stop="85869" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="644" r_length="354" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E334329" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89707" e_stop="89483"/>
          <exon e_start="86416" e_stop="86352"/>
          <exon e_start="86222" e_stop="85869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATTCGGAATCGGAGGCAGATATCAGCGATGGCCACCGCCGGTAAACTCGTGTCGTCGTCGTCGTCGTCACCCAAGCCTTTCGATTTCTCCGACGATTCAGTTCCTAAGAGAGTCGTTCTGTCGAGTGATCAGCAGCGTTATTGCTTGGAAGTACTCAAAGTCTTCAAGGACAAGAGGTTTTCTGCTCCCGAAAAAATCCGCCAAGAGTTCATGACGTTGCAGGTCCGTTTGCATTATACTCTCTTTCTTTCTCAATTTTATTGTTATTTAATGTTGTGCTTTTTCATAAAAGAGGAGGGTATTTATTCAATTGGTCAATTTTTTTGAAGAATATTTTCTCAAGTTACTCGAAGAATGATGAAAATAACTTCCAAAACAGGTTCTACAAGTGATGTGTACCTCTGTCTTTGAAGAAACAGAGGAGGGGGGCCAGTTTAGGAGTCTCATTTTTTTGATTCATTCATTCATAAGAGTGTATGATAAGAAAAAGTCCTCCAACACACCTCATCTTTACCTCCGTTATTTGTCTATATTATATACAAATGCTTTTAGTATAGTATATTTTGCTAAGTACTATACACGAGAAAATAAGTTACAAATCCACTTATTTCCTGGAAAACTATTTCCTTCATACAGAATACACCCGAAATGTTGAATTTGGGATATATGAGATGGATCCAAACAGAGTGAGATGGATATAAAGTATTCTTAGTCCATGTTCAACTAGTTAGGGAATATGGTGGAGTTGATTGACGTGTGATGATTATTTGATTTTTAGTTGGATATTCACAGTCATATTATCATATATCAATTAGAAAAACCAAGTCTTTCTATGCTAAGAATGAGTTGCTGTCGTCATTGGACTTTTCAACGTTTCTTCTTCACATAGGTGGTTCCATTCTTGGAAAATTGTGGTAGTTTGAATGCTTCAAACAGCAAATTCATTGGAACGTATTAAATGGTTCATATTAATCGATATGTATATAGAGGATTTATGCTATGGACTCCAGGTAATTTAGAATTAAGATTTAGTTGATAAATTGACTGATTGAAGTGTTGGTAAATTGTTTGAGTTCTAGTTGGATTTTTACTGTCATACTATTTTGAAAAGGGAAATCACTTACTCCTTGTAGGATGACTGTCAACCTTAACTAGGTGATAACATCATGAAGGCTTTAGGCATTTAATTCATTACGTCATATGAAATAGGCTGAAGTTAGTTGATCTTGAGCCGACTACTAGTAGTTAGGGATCGAGAAGTAGTTAACCGGTTGATTGATTGATTCAAAGTTTTGGGTGATATTGATGACGTCAATTTATTCGATTCAAACACAATACACATAACATTTTTCCAAAGTGGGAATATAACTAAGTTAAAGACTTAGCGCTTCTAATATTCTGACATATGCTATTTTGAAACATCTCCTACTGTGTTCAATCATAATTTTAAGCTCTCAGCATTAGCATGTGTTGTAGTATGTTTTACAGGATTCTACAATCTATACCATATCGCTAGCCTTTCCTCTCTGAATTTGTACATCTTTTCACTACAATTAGTGTCTCCTTGAGATATAGCATCTTTTTTTTTTTCGATTGGTAAAAGTAATTTGATTCAACAAAATGCTCTTTCTGGTATAGAATTTTTGCAGCATTCTTCCCCTCATTTCACTTATCCTATGCTAATATGATAATCCAAAACTTGTTGCTTCTCATTTAACATTCTTTATGTTTTCTTGTAGGTAATCATGCTTAGAAGATTAGAGTTAGAATTTGTTTCCACGTGAAAAAAGGACTAGTTCTTTTTCCTTTCAAAGAGTAATTATTTATTGATCCCGCTTAGGGATTACACTGGGTATGTTGTTGTATGTGAAAGCTCATACTAGGGTATAGGAGAAGTAAAGAAGTTCTGCAAAAATACAGTTCTCTATGAACAACATCTAGTTAGTATAACTCTGTACTACCAGAGGTTTTATGTTCTCTCTTAAATTTACTAGAAACAACATATTTGCCTTAATTTGCATGAGAATACCTTTTTATCGGTAATTTGTATAACAGTATTATTCTCCCCTCGGAAACTCCATTCCTTTCTCTCCTATTACCCACATTTGGACAGACCAGGTTACATTCCTGCTCTCTATCTCCGTTTCCTTCTTTCTTCTAAAGCTCCAACTGAACATGAGATCTTTCCTTGTATATGCTATTGCCTACTGAACGCCAAAGGGATTCAATACTACGCACTTTAATCAACTTTCTAATGGGCAATGCGTGAGCAAGTGATCCACATCTGCGCAGGATTGTTTACACATATAGCACCAGCTATTTTGTCCTAACTTCCGTTTGCTCAAGTTCTCTGCAGTAAGGATGACTACCCTTGCTGTTGCTGGAAAACATACCTTCATCAGAGCTCTAGGAATCCAGATTGAGATCTGTGGGAGAATTATGTGTTTTCTTTTTAGTAGTCTGTCGTAGGACTACTTAAGTCCAAAATTCCTCATGCTTGCCCATTCCATAACTAAGAATTCTGACCTGTTGGTGTGATGTTTTGCTTTTAAATAGGTTGTGGAACTCACCTATCTCCCACAGCTGTAATGATCAAGTTGCTTAGTTTTGTTGTTACATTTCAGAGAGTAATATTGTTACTTTTTTGAGATCCGGAATGTATTAGGAAGACCTTGCTCAAAGTATCAACTCCGAAAAGCAAAAATGGAGGCATATTGGGAGTTAGGTGGTCTTAACTCTTAAGTGTCTATATGAAGCAAAATAACACCTTTAGATAGTTTTAAGAAAATATTGAGAAGCTTCTTTGATGGTTGAGTTCATTTATGTAATGTTTCCCGCTCTCATTTAAATCTAGTTTCCAAAAAAAAAAATCAAAATCCAAGCATCTTTTTTATGATGTTTTGGGTAGATGCTGGTGGTGGTGACTCCACTTAAAATGAGCTAAATTTATGTGAAAGGACAGCTCTCTTATGTCTTGAGAAAGTTGTTGTTGCATGATGTTGTTTGTTTTGCTTCTTTGTTATTTACTTGTTGAGATCTTGGCTTTCTGTAAGTAGCATGATGTTATCCTGAATTCCAAGAACACCTCTTATGACTCAGGCAACTAGGATGAGAGCTTCAGAAATGAAAAGTAGATGCTCAATGGCTTTGAACAGCGCAAACATTAGCAAAAATCGATACACTGATGTTCTGCCATGTATGCAGATCAGTTTCTATCAATTCTTCGATTGATGTTGAAGTTGTGTATTATAACCTGTGAATAATTATATCAAGCTTCATTCTTCTCAGTTGACAATAACAGGGTTGTTTTGGACCCACCAGCTAGAGGATATATAAATGCAAGCTTCATTAAGGTAGACTTCTACGTCCATTACTTGAAATTAGTTAAGCATGCTACTTGCTTTTGATACTCTCTTGGAAAATGTCAAGCTCTCTTCCACCAATCTGCTTCATGAGCATTATAATGCTCCTTTTTGCTGTAGATATCTGAAGACGTGTCTCAGTTTATTGCAACACAAGGTCCTCTACAACACACTTTTGAAGACTTCTGGGAAATGATAATCCAGCATCGCTGTCCTGTGATTGTGATGCTTACACAATTGTTTGACAACTACAAGGTATTCAACTGTTAAATTACGAGGTAAGCATTGTAATGTTAACAAGACAAGATATCTTGTTCTGTCATGTCACATGTGACAGAAAGAAAAAAATTGAGATTTTTTGTGACAAGGCTTCTGATCCAAAATTTGCTACCTAGGTAAAATTCTAACTTTTCTGCCTTTTTCATCTCTTGATTTTCATCCTCTGTTGTAATTAGATCTAGCATTTTTATACTT</genome_strand>
        <mrna_strand>TCCATTCGGAATCGGAGGCAGATATCAGCGATGGCCACCGCCGGTAAACTCGTGTCGTCGTCGTCGTCGTCACCCAAGCCTTTCGATTTCTCCGACGATTCAGTTCCTAAGAGAGTCGTTCTGTCGAGTGATCAGCAGCGTTATTGCTTGGAAGTACTCAAAGTCTTCAAGGACAAGAGGTTTTCTGCTCCCGAAAAAATCCGCCAAGAGTTCATGACGTTGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACAATAACAGGGTTGTTTTGGACCCACCAGCTAGAGGATATATAAATGCAAGCTTCATTAAG.................................................................................................................................ATATCTGAAGACGTGTCTCAGTTTATTGCAACACAAGGTCCTCTACAACACACTTTTGAAGACTTCTGGGAAATGATAATCCAGCATCGCTGTCCTGTGATTGTGATGCTTACACAATTGTTTGACAACTACAAGGTATTCAACTGTTAAATTACGAGGTAAGCATTGTAATGTTAACAAGACAAGATATCTTGTTCTGTCATGTCACATGTGACAGAAAGAAAAAAATTGAGATTTTTTGTGACAAGGCTTCTGATCCAAAATTTGCTACCTAGGTAAAATTCTAACTTTTCTGCCTTTTTCATCTCTTGATTTTCATCCTCTGTTGTAATTAGATCTAGCATTTTTATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344503" ref_strand="+" ref_description="SGN-E344503 [cTOF-14-N7]">
      <seq>ttgaaagtgcgtacaaagaaagcagtgaagtgaacatcctaccacggggtgcggactatccattcggaatcggaggcagatatcagcgatggccaccgccggtaaactcgtgtcgtcgtcgtcgtcgtcacccaagcctttcgatttctccgacgattcagttcctaagagagtcgttctgtcgagtgatcagcagcgttattgcttggaagtactcaaagtcttcaaggacaagaggttttctgctcccgaaaaaatccgccaagagttcatgacgttgcaggcaactaggatgagagcttcagaaatgaaaagtagatgctcaatggctttgaacagcgcaaacattagcaaaaatcgatacactgatgttctgccatttgacaataacagggttgttttggacccaccagctagaggatatataaatgcaagcttcattaagatatctgaagacgtgtctcagtttattgcaacacaaggtcctctacaacacacttttgaagacttctgggaaatgataatccagcatcgctgtcctgtgattgtgatgcttacacaattgtttgacaactacaaggtattcaactgttaaattacgaggtaagcattgtaatgttaacaagacaagatatcttgttctgtcatgtcacatgtgacagaaagaaaaaattgagattttttgtgacagggcttctgatccaaaatttgctacctaagtaaaatnctaacttttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90065" stop="85629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89765" g_stop="89483" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89482" i_stop="86606" i_length="2877">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.637" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86605" g_stop="86509" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="380" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86508" i_stop="86417" i_length="92">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86416" g_stop="86352" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="445" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86351" i_stop="86223" i_length="129">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86222" g_stop="85929" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="738" r_length="293" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E344503" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89765" e_stop="89483"/>
          <exon e_start="86605" e_stop="86509"/>
          <exon e_start="86416" e_stop="86352"/>
          <exon e_start="86222" e_stop="85929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAAGTGCGTACAAAGAAAGCAGTGAAGTGAACATCCTACCACGGGGTGCGGACTGTCCATTCGGAATCGGAGGCAGATATCAGCGATGGCCACCGCCGGTAAACTCGTGTCGTCGTCGTCGTCGTCACCCAAGCCTTTCGATTTCTCCGACGATTCAGTTCCTAAGAGAGTCGTTCTGTCGAGTGATCAGCAGCGTTATTGCTTGGAAGTACTCAAAGTCTTCAAGGACAAGAGGTTTTCTGCTCCCGAAAAAATCCGCCAAGAGTTCATGACGTTGCAGGTCCGTTTGCATTATACTCTCTTTCTTTCTCAATTTTATTGTTATTTAATGTTGTGCTTTTTCATAAAAGAGGAGGGTATTTATTCAATTGGTCAATTTTTTTGAAGAATATTTTCTCAAGTTACTCGAAGAATGATGAAAATAACTTCCAAAACAGGTTCTACAAGTGATGTGTACCTCTGTCTTTGAAGAAACAGAGGAGGGGGGCCAGTTTAGGAGTCTCATTTTTTTGATTCATTCATTCATAAGAGTGTATGATAAGAAAAAGTCCTCCAACACACCTCATCTTTACCTCCGTTATTTGTCTATATTATATACAAATGCTTTTAGTATAGTATATTTTGCTAAGTACTATACACGAGAAAATAAGTTACAAATCCACTTATTTCCTGGAAAACTATTTCCTTCATACAGAATACACCCGAAATGTTGAATTTGGGATATATGAGATGGATCCAAACAGAGTGAGATGGATATAAAGTATTCTTAGTCCATGTTCAACTAGTTAGGGAATATGGTGGAGTTGATTGACGTGTGATGATTATTTGATTTTTAGTTGGATATTCACAGTCATATTATCATATATCAATTAGAAAAACCAAGTCTTTCTATGCTAAGAATGAGTTGCTGTCGTCATTGGACTTTTCAACGTTTCTTCTTCACATAGGTGGTTCCATTCTTGGAAAATTGTGGTAGTTTGAATGCTTCAAACAGCAAATTCATTGGAACGTATTAAATGGTTCATATTAATCGATATGTATATAGAGGATTTATGCTATGGACTCCAGGTAATTTAGAATTAAGATTTAGTTGATAAATTGACTGATTGAAGTGTTGGTAAATTGTTTGAGTTCTAGTTGGATTTTTACTGTCATACTATTTTGAAAAGGGAAATCACTTACTCCTTGTAGGATGACTGTCAACCTTAACTAGGTGATAACATCATGAAGGCTTTAGGCATTTAATTCATTACGTCATATGAAATAGGCTGAAGTTAGTTGATCTTGAGCCGACTACTAGTAGTTAGGGATCGAGAAGTAGTTAACCGGTTGATTGATTGATTCAAAGTTTTGGGTGATATTGATGACGTCAATTTATTCGATTCAAACACAATACACATAACATTTTTCCAAAGTGGGAATATAACTAAGTTAAAGACTTAGCGCTTCTAATATTCTGACATATGCTATTTTGAAACATCTCCTACTGTGTTCAATCATAATTTTAAGCTCTCAGCATTAGCATGTGTTGTAGTATGTTTTACAGGATTCTACAATCTATACCATATCGCTAGCCTTTCCTCTCTGAATTTGTACATCTTTTCACTACAATTAGTGTCTCCTTGAGATATAGCATCTTTTTTTTTTTCGATTGGTAAAAGTAATTTGATTCAACAAAATGCTCTTTCTGGTATAGAATTTTTGCAGCATTCTTCCCCTCATTTCACTTATCCTATGCTAATATGATAATCCAAAACTTGTTGCTTCTCATTTAACATTCTTTATGTTTTCTTGTAGGTAATCATGCTTAGAAGATTAGAGTTAGAATTTGTTTCCACGTGAAAAAAGGACTAGTTCTTTTTCCTTTCAAAGAGTAATTATTTATTGATCCCGCTTAGGGATTACACTGGGTATGTTGTTGTATGTGAAAGCTCATACTAGGGTATAGGAGAAGTAAAGAAGTTCTGCAAAAATACAGTTCTCTATGAACAACATCTAGTTAGTATAACTCTGTACTACCAGAGGTTTTATGTTCTCTCTTAAATTTACTAGAAACAACATATTTGCCTTAATTTGCATGAGAATACCTTTTTATCGGTAATTTGTATAACAGTATTATTCTCCCCTCGGAAACTCCATTCCTTTCTCTCCTATTACCCACATTTGGACAGACCAGGTTACATTCCTGCTCTCTATCTCCGTTTCCTTCTTTCTTCTAAAGCTCCAACTGAACATGAGATCTTTCCTTGTATATGCTATTGCCTACTGAACGCCAAAGGGATTCAATACTACGCACTTTAATCAACTTTCTAATGGGCAATGCGTGAGCAAGTGATCCACATCTGCGCAGGATTGTTTACACATATAGCACCAGCTATTTTGTCCTAACTTCCGTTTGCTCAAGTTCTCTGCAGTAAGGATGACTACCCTTGCTGTTGCTGGAAAACATACCTTCATCAGAGCTCTAGGAATCCAGATTGAGATCTGTGGGAGAATTATGTGTTTTCTTTTTAGTAGTCTGTCGTAGGACTACTTAAGTCCAAAATTCCTCATGCTTGCCCATTCCATAACTAAGAATTCTGACCTGTTGGTGTGATGTTTTGCTTTTAAATAGGTTGTGGAACTCACCTATCTCCCACAGCTGTAATGATCAAGTTGCTTAGTTTTGTTGTTACATTTCAGAGAGTAATATTGTTACTTTTTTGAGATCCGGAATGTATTAGGAAGACCTTGCTCAAAGTATCAACTCCGAAAAGCAAAAATGGAGGCATATTGGGAGTTAGGTGGTCTTAACTCTTAAGTGTCTATATGAAGCAAAATAACACCTTTAGATAGTTTTAAGAAAATATTGAGAAGCTTCTTTGATGGTTGAGTTCATTTATGTAATGTTTCCCGCTCTCATTTAAATCTAGTTTCCAAAAAAAAAAATCAAAATCCAAGCATCTTTTTTATGATGTTTTGGGTAGATGCTGGTGGTGGTGACTCCACTTAAAATGAGCTAAATTTATGTGAAAGGACAGCTCTCTTATGTCTTGAGAAAGTTGTTGTTGCATGATGTTGTTTGTTTTGCTTCTTTGTTATTTACTTGTTGAGATCTTGGCTTTCTGTAAGTAGCATGATGTTATCCTGAATTCCAAGAACACCTCTTATGACTCAGGCAACTAGGATGAGAGCTTCAGAAATGAAAAGTAGATGCTCAATGGCTTTGAACAGCGCAAACATTAGCAAAAATCGATACACTGATGTTCTGCCATGTATGCAGATCAGTTTCTATCAATTCTTCGATTGATGTTGAAGTTGTGTATTATAACCTGTGAATAATTATATCAAGCTTCATTCTTCTCAGTTGACAATAACAGGGTTGTTTTGGACCCACCAGCTAGAGGATATATAAATGCAAGCTTCATTAAGGTAGACTTCTACGTCCATTACTTGAAATTAGTTAAGCATGCTACTTGCTTTTGATACTCTCTTGGAAAATGTCAAGCTCTCTTCCACCAATCTGCTTCATGAGCATTATAATGCTCCTTTTTGCTGTAGATATCTGAAGACGTGTCTCAGTTTATTGCAACACAAGGTCCTCTACAACACACTTTTGAAGACTTCTGGGAAATGATAATCCAGCATCGCTGTCCTGTGATTGTGATGCTTACACAATTGTTTGACAACTACAAGGTATTCAACTGTTAAATTACGAGGTAAGCATTGTAATGTTAACAAGACAAGATATCTTGTTCTGTCATGTCACATGTGACAGAAAGAAAAAAATTGAGATTTTTTGTGACAAGGCTTCTGATCCAAAATTTGCTACCTAGGTAAAATTCTAACTTTTCT</genome_strand>
        <mrna_strand>TTGAAAGTGCGTACAAAGAAAGCAGTGAAGTGAACATCCTACCACGGGGTGCGGACTATCCATTCGGAATCGGAGGCAGATATCAGCGATGGCCACCGCCGGTAAACTCGTGTCGTCGTCGTCGTCGTCACCCAAGCCTTTCGATTTCTCCGACGATTCAGTTCCTAAGAGAGTCGTTCTGTCGAGTGATCAGCAGCGTTATTGCTTGGAAGTACTCAAAGTCTTCAAGGACAAGAGGTTTTCTGCTCCCGAAAAAATCCGCCAAGAGTTCATGACGTTGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTAGGATGAGAGCTTCAGAAATGAAAAGTAGATGCTCAATGGCTTTGAACAGCGCAAACATTAGCAAAAATCGATACACTGATGTTCTGCCAT............................................................................................TTGACAATAACAGGGTTGTTTTGGACCCACCAGCTAGAGGATATATAAATGCAAGCTTCATTAAG.................................................................................................................................ATATCTGAAGACGTGTCTCAGTTTATTGCAACACAAGGTCCTCTACAACACACTTTTGAAGACTTCTGGGAAATGATAATCCAGCATCGCTGTCCTGTGATTGTGATGCTTACACAATTGTTTGACAACTACAAGGTATTCAACTGTTAAATTACGAGGTAAGCATTGTAATGTTAACAAGACAAGATATCTTGTTCTGTCATGTCACATGTGACAGAAAG-AAAAAATTGAGATTTTTTGTGACAGGGCTTCTGATCCAAAATTTGCTACCTAAGTAAAATNCTAACTTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312851" ref_strand="+" ref_description="SGN-E312851 [cTOA-8-G4]">
      <seq>gaaagtgcgtacaaagaaagcagtgaagtgaacatcctaccacggggtgcggactgtccattcggaatcggaggcagatatcagcgatggccaccgccggtgaactcgtgtcgtcgtcgtcgtcgtcacccaagcctttcgatttctccgacgattcagttcctaagagagtcggtctgtctagtgatcagcagcgttattgcttggaagtactcaaagtcttcaaggacaagaggttttctgctcccgaaaaaatccgccaagagttcatgacgttgcatgcaactatgatgagagcttcagaaatgaaaagtagatgctcaatggctttgaacagcgcaaacattagcaaaaatcgatacactgatgttctgccatttgacaataacatggttgttttggacccaccagctagaggatatataaatgcaagcttcattaacatatctgaagacgtgtctcagtttattgcaacacaaggtcctctacaacacacttttgaagacttctgggaaatgataatccagcatcgctgtcctgtgattgtgatgcttacacaattgtttgacaactacaaagtattcaactgttaaattacgaggtaagcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90063" stop="85757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89763" g_stop="89483" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89482" i_stop="86606" i_length="2877">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.637" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86605" g_stop="86509" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="378" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86508" i_stop="86417" i_length="92">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86416" g_stop="86352" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="443" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86351" i_stop="86223" i_length="129">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86222" g_stop="86057" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="609" r_length="166" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E312851" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89763" e_stop="89483"/>
          <exon e_start="86605" e_stop="86509"/>
          <exon e_start="86416" e_stop="86352"/>
          <exon e_start="86222" e_stop="86057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGTGCGTACAAAGAAAGCAGTGAAGTGAACATCCTACCACGGGGTGCGGACTGTCCATTCGGAATCGGAGGCAGATATCAGCGATGGCCACCGCCGGTAAACTCGTGTCGTCGTCGTCGTCGTCACCCAAGCCTTTCGATTTCTCCGACGATTCAGTTCCTAAGAGAGTCGTTCTGTCGAGTGATCAGCAGCGTTATTGCTTGGAAGTACTCAAAGTCTTCAAGGACAAGAGGTTTTCTGCTCCCGAAAAAATCCGCCAAGAGTTCATGACGTTGCAGGTCCGTTTGCATTATACTCTCTTTCTTTCTCAATTTTATTGTTATTTAATGTTGTGCTTTTTCATAAAAGAGGAGGGTATTTATTCAATTGGTCAATTTTTTTGAAGAATATTTTCTCAAGTTACTCGAAGAATGATGAAAATAACTTCCAAAACAGGTTCTACAAGTGATGTGTACCTCTGTCTTTGAAGAAACAGAGGAGGGGGGCCAGTTTAGGAGTCTCATTTTTTTGATTCATTCATTCATAAGAGTGTATGATAAGAAAAAGTCCTCCAACACACCTCATCTTTACCTCCGTTATTTGTCTATATTATATACAAATGCTTTTAGTATAGTATATTTTGCTAAGTACTATACACGAGAAAATAAGTTACAAATCCACTTATTTCCTGGAAAACTATTTCCTTCATACAGAATACACCCGAAATGTTGAATTTGGGATATATGAGATGGATCCAAACAGAGTGAGATGGATATAAAGTATTCTTAGTCCATGTTCAACTAGTTAGGGAATATGGTGGAGTTGATTGACGTGTGATGATTATTTGATTTTTAGTTGGATATTCACAGTCATATTATCATATATCAATTAGAAAAACCAAGTCTTTCTATGCTAAGAATGAGTTGCTGTCGTCATTGGACTTTTCAACGTTTCTTCTTCACATAGGTGGTTCCATTCTTGGAAAATTGTGGTAGTTTGAATGCTTCAAACAGCAAATTCATTGGAACGTATTAAATGGTTCATATTAATCGATATGTATATAGAGGATTTATGCTATGGACTCCAGGTAATTTAGAATTAAGATTTAGTTGATAAATTGACTGATTGAAGTGTTGGTAAATTGTTTGAGTTCTAGTTGGATTTTTACTGTCATACTATTTTGAAAAGGGAAATCACTTACTCCTTGTAGGATGACTGTCAACCTTAACTAGGTGATAACATCATGAAGGCTTTAGGCATTTAATTCATTACGTCATATGAAATAGGCTGAAGTTAGTTGATCTTGAGCCGACTACTAGTAGTTAGGGATCGAGAAGTAGTTAACCGGTTGATTGATTGATTCAAAGTTTTGGGTGATATTGATGACGTCAATTTATTCGATTCAAACACAATACACATAACATTTTTCCAAAGTGGGAATATAACTAAGTTAAAGACTTAGCGCTTCTAATATTCTGACATATGCTATTTTGAAACATCTCCTACTGTGTTCAATCATAATTTTAAGCTCTCAGCATTAGCATGTGTTGTAGTATGTTTTACAGGATTCTACAATCTATACCATATCGCTAGCCTTTCCTCTCTGAATTTGTACATCTTTTCACTACAATTAGTGTCTCCTTGAGATATAGCATCTTTTTTTTTTTCGATTGGTAAAAGTAATTTGATTCAACAAAATGCTCTTTCTGGTATAGAATTTTTGCAGCATTCTTCCCCTCATTTCACTTATCCTATGCTAATATGATAATCCAAAACTTGTTGCTTCTCATTTAACATTCTTTATGTTTTCTTGTAGGTAATCATGCTTAGAAGATTAGAGTTAGAATTTGTTTCCACGTGAAAAAAGGACTAGTTCTTTTTCCTTTCAAAGAGTAATTATTTATTGATCCCGCTTAGGGATTACACTGGGTATGTTGTTGTATGTGAAAGCTCATACTAGGGTATAGGAGAAGTAAAGAAGTTCTGCAAAAATACAGTTCTCTATGAACAACATCTAGTTAGTATAACTCTGTACTACCAGAGGTTTTATGTTCTCTCTTAAATTTACTAGAAACAACATATTTGCCTTAATTTGCATGAGAATACCTTTTTATCGGTAATTTGTATAACAGTATTATTCTCCCCTCGGAAACTCCATTCCTTTCTCTCCTATTACCCACATTTGGACAGACCAGGTTACATTCCTGCTCTCTATCTCCGTTTCCTTCTTTCTTCTAAAGCTCCAACTGAACATGAGATCTTTCCTTGTATATGCTATTGCCTACTGAACGCCAAAGGGATTCAATACTACGCACTTTAATCAACTTTCTAATGGGCAATGCGTGAGCAAGTGATCCACATCTGCGCAGGATTGTTTACACATATAGCACCAGCTATTTTGTCCTAACTTCCGTTTGCTCAAGTTCTCTGCAGTAAGGATGACTACCCTTGCTGTTGCTGGAAAACATACCTTCATCAGAGCTCTAGGAATCCAGATTGAGATCTGTGGGAGAATTATGTGTTTTCTTTTTAGTAGTCTGTCGTAGGACTACTTAAGTCCAAAATTCCTCATGCTTGCCCATTCCATAACTAAGAATTCTGACCTGTTGGTGTGATGTTTTGCTTTTAAATAGGTTGTGGAACTCACCTATCTCCCACAGCTGTAATGATCAAGTTGCTTAGTTTTGTTGTTACATTTCAGAGAGTAATATTGTTACTTTTTTGAGATCCGGAATGTATTAGGAAGACCTTGCTCAAAGTATCAACTCCGAAAAGCAAAAATGGAGGCATATTGGGAGTTAGGTGGTCTTAACTCTTAAGTGTCTATATGAAGCAAAATAACACCTTTAGATAGTTTTAAGAAAATATTGAGAAGCTTCTTTGATGGTTGAGTTCATTTATGTAATGTTTCCCGCTCTCATTTAAATCTAGTTTCCAAAAAAAAAAATCAAAATCCAAGCATCTTTTTTATGATGTTTTGGGTAGATGCTGGTGGTGGTGACTCCACTTAAAATGAGCTAAATTTATGTGAAAGGACAGCTCTCTTATGTCTTGAGAAAGTTGTTGTTGCATGATGTTGTTTGTTTTGCTTCTTTGTTATTTACTTGTTGAGATCTTGGCTTTCTGTAAGTAGCATGATGTTATCCTGAATTCCAAGAACACCTCTTATGACTCAGGCAACTAGGATGAGAGCTTCAGAAATGAAAAGTAGATGCTCAATGGCTTTGAACAGCGCAAACATTAGCAAAAATCGATACACTGATGTTCTGCCATGTATGCAGATCAGTTTCTATCAATTCTTCGATTGATGTTGAAGTTGTGTATTATAACCTGTGAATAATTATATCAAGCTTCATTCTTCTCAGTTGACAATAACAGGGTTGTTTTGGACCCACCAGCTAGAGGATATATAAATGCAAGCTTCATTAAGGTAGACTTCTACGTCCATTACTTGAAATTAGTTAAGCATGCTACTTGCTTTTGATACTCTCTTGGAAAATGTCAAGCTCTCTTCCACCAATCTGCTTCATGAGCATTATAATGCTCCTTTTTGCTGTAGATATCTGAAGACGTGTCTCAGTTTATTGCAACACAAGGTCCTCTACAACACACTTTTGAAGACTTCTGGGAAATGATAATCCAGCATCGCTGTCCTGTGATTGTGATGCTTACACAATTGTTTGACAACTACAAGGTATTCAACTGTTAAATTACGAGGTAAGCAT</genome_strand>
        <mrna_strand>GAAAGTGCGTACAAAGAAAGCAGTGAAGTGAACATCCTACCACGGGGTGCGGACTGTCCATTCGGAATCGGAGGCAGATATCAGCGATGGCCACCGCCGGTGAACTCGTGTCGTCGTCGTCGTCGTCACCCAAGCCTTTCGATTTCTCCGACGATTCAGTTCCTAAGAGAGTCGGTCTGTCTAGTGATCAGCAGCGTTATTGCTTGGAAGTACTCAAAGTCTTCAAGGACAAGAGGTTTTCTGCTCCCGAAAAAATCCGCCAAGAGTTCATGACGTTGCAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTATGATGAGAGCTTCAGAAATGAAAAGTAGATGCTCAATGGCTTTGAACAGCGCAAACATTAGCAAAAATCGATACACTGATGTTCTGCCAT............................................................................................TTGACAATAACATGGTTGTTTTGGACCCACCAGCTAGAGGATATATAAATGCAAGCTTCATTAAC.................................................................................................................................ATATCTGAAGACGTGTCTCAGTTTATTGCAACACAAGGTCCTCTACAACACACTTTTGAAGACTTCTGGGAAATGATAATCCAGCATCGCTGTCCTGTGATTGTGATGCTTACACAATTGTTTGACAACTACAAAGTATTCAACTGTTAAATTACGAGGTAAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390098" ref_strand="+" ref_description="SGN-E390098 [TUS-17-E11]">
      <seq>cggaatcggaggcagatatcagcgatggccaccgccggtaaactcgtgtcgtcgtcgtcgtcgtcacccaagcctttcgatttctccgacgattcagttcctaagagagtcgttctgtcgagtgatcagcagcgttattgcttggaagtactcaaagtcttcaaggacaagaggttttctgctcccgaaaaaatccgccaagagttcatgacgttgcaggcaactaggatgagagcttcagaaatgaaaagtagatgctcaatggctttgaacagcgcaaacattagcaaaaatcgatacactgatgttctgccatttgacaataacagggttgttttggacccaccagctagaggatatataaatgcaagcttcattaagatatctgaagacgtgtctcagtttattgcgggggggagggtcctctacaacacacttttgaagacttctgggaaatgataatccagcatcgctgtcctgtgattgtgatgcttacacaattgtttgacaactacaagattgtcaagtgtggggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90001" stop="85776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89701" g_stop="89483" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89482" i_stop="86606" i_length="2877">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.637" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86605" g_stop="86509" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="316" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86508" i_stop="86417" i_length="92">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86416" g_stop="86352" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="381" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86351" i_stop="86223" i_length="129">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.79"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86222" g_stop="86088" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="518" r_length="137" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E390098" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89701" e_stop="89483"/>
          <exon e_start="86605" e_stop="86509"/>
          <exon e_start="86416" e_stop="86352"/>
          <exon e_start="86222" e_stop="86088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAATCGGAGGCAGATATCAGCGATGGCCACCGCCGGTAAACTCGTGTCGTCGTCGTCGTCGTCACCCAAGCCTTTCGATTTCTCCGACGATTCAGTTCCTAAGAGAGTCGTTCTGTCGAGTGATCAGCAGCGTTATTGCTTGGAAGTACTCAAAGTCTTCAAGGACAAGAGGTTTTCTGCTCCCGAAAAAATCCGCCAAGAGTTCATGACGTTGCAGGTCCGTTTGCATTATACTCTCTTTCTTTCTCAATTTTATTGTTATTTAATGTTGTGCTTTTTCATAAAAGAGGAGGGTATTTATTCAATTGGTCAATTTTTTTGAAGAATATTTTCTCAAGTTACTCGAAGAATGATGAAAATAACTTCCAAAACAGGTTCTACAAGTGATGTGTACCTCTGTCTTTGAAGAAACAGAGGAGGGGGGCCAGTTTAGGAGTCTCATTTTTTTGATTCATTCATTCATAAGAGTGTATGATAAGAAAAAGTCCTCCAACACACCTCATCTTTACCTCCGTTATTTGTCTATATTATATACAAATGCTTTTAGTATAGTATATTTTGCTAAGTACTATACACGAGAAAATAAGTTACAAATCCACTTATTTCCTGGAAAACTATTTCCTTCATACAGAATACACCCGAAATGTTGAATTTGGGATATATGAGATGGATCCAAACAGAGTGAGATGGATATAAAGTATTCTTAGTCCATGTTCAACTAGTTAGGGAATATGGTGGAGTTGATTGACGTGTGATGATTATTTGATTTTTAGTTGGATATTCACAGTCATATTATCATATATCAATTAGAAAAACCAAGTCTTTCTATGCTAAGAATGAGTTGCTGTCGTCATTGGACTTTTCAACGTTTCTTCTTCACATAGGTGGTTCCATTCTTGGAAAATTGTGGTAGTTTGAATGCTTCAAACAGCAAATTCATTGGAACGTATTAAATGGTTCATATTAATCGATATGTATATAGAGGATTTATGCTATGGACTCCAGGTAATTTAGAATTAAGATTTAGTTGATAAATTGACTGATTGAAGTGTTGGTAAATTGTTTGAGTTCTAGTTGGATTTTTACTGTCATACTATTTTGAAAAGGGAAATCACTTACTCCTTGTAGGATGACTGTCAACCTTAACTAGGTGATAACATCATGAAGGCTTTAGGCATTTAATTCATTACGTCATATGAAATAGGCTGAAGTTAGTTGATCTTGAGCCGACTACTAGTAGTTAGGGATCGAGAAGTAGTTAACCGGTTGATTGATTGATTCAAAGTTTTGGGTGATATTGATGACGTCAATTTATTCGATTCAAACACAATACACATAACATTTTTCCAAAGTGGGAATATAACTAAGTTAAAGACTTAGCGCTTCTAATATTCTGACATATGCTATTTTGAAACATCTCCTACTGTGTTCAATCATAATTTTAAGCTCTCAGCATTAGCATGTGTTGTAGTATGTTTTACAGGATTCTACAATCTATACCATATCGCTAGCCTTTCCTCTCTGAATTTGTACATCTTTTCACTACAATTAGTGTCTCCTTGAGATATAGCATCTTTTTTTTTTTCGATTGGTAAAAGTAATTTGATTCAACAAAATGCTCTTTCTGGTATAGAATTTTTGCAGCATTCTTCCCCTCATTTCACTTATCCTATGCTAATATGATAATCCAAAACTTGTTGCTTCTCATTTAACATTCTTTATGTTTTCTTGTAGGTAATCATGCTTAGAAGATTAGAGTTAGAATTTGTTTCCACGTGAAAAAAGGACTAGTTCTTTTTCCTTTCAAAGAGTAATTATTTATTGATCCCGCTTAGGGATTACACTGGGTATGTTGTTGTATGTGAAAGCTCATACTAGGGTATAGGAGAAGTAAAGAAGTTCTGCAAAAATACAGTTCTCTATGAACAACATCTAGTTAGTATAACTCTGTACTACCAGAGGTTTTATGTTCTCTCTTAAATTTACTAGAAACAACATATTTGCCTTAATTTGCATGAGAATACCTTTTTATCGGTAATTTGTATAACAGTATTATTCTCCCCTCGGAAACTCCATTCCTTTCTCTCCTATTACCCACATTTGGACAGACCAGGTTACATTCCTGCTCTCTATCTCCGTTTCCTTCTTTCTTCTAAAGCTCCAACTGAACATGAGATCTTTCCTTGTATATGCTATTGCCTACTGAACGCCAAAGGGATTCAATACTACGCACTTTAATCAACTTTCTAATGGGCAATGCGTGAGCAAGTGATCCACATCTGCGCAGGATTGTTTACACATATAGCACCAGCTATTTTGTCCTAACTTCCGTTTGCTCAAGTTCTCTGCAGTAAGGATGACTACCCTTGCTGTTGCTGGAAAACATACCTTCATCAGAGCTCTAGGAATCCAGATTGAGATCTGTGGGAGAATTATGTGTTTTCTTTTTAGTAGTCTGTCGTAGGACTACTTAAGTCCAAAATTCCTCATGCTTGCCCATTCCATAACTAAGAATTCTGACCTGTTGGTGTGATGTTTTGCTTTTAAATAGGTTGTGGAACTCACCTATCTCCCACAGCTGTAATGATCAAGTTGCTTAGTTTTGTTGTTACATTTCAGAGAGTAATATTGTTACTTTTTTGAGATCCGGAATGTATTAGGAAGACCTTGCTCAAAGTATCAACTCCGAAAAGCAAAAATGGAGGCATATTGGGAGTTAGGTGGTCTTAACTCTTAAGTGTCTATATGAAGCAAAATAACACCTTTAGATAGTTTTAAGAAAATATTGAGAAGCTTCTTTGATGGTTGAGTTCATTTATGTAATGTTTCCCGCTCTCATTTAAATCTAGTTTCCAAAAAAAAAAATCAAAATCCAAGCATCTTTTTTATGATGTTTTGGGTAGATGCTGGTGGTGGTGACTCCACTTAAAATGAGCTAAATTTATGTGAAAGGACAGCTCTCTTATGTCTTGAGAAAGTTGTTGTTGCATGATGTTGTTTGTTTTGCTTCTTTGTTATTTACTTGTTGAGATCTTGGCTTTCTGTAAGTAGCATGATGTTATCCTGAATTCCAAGAACACCTCTTATGACTCAGGCAACTAGGATGAGAGCTTCAGAAATGAAAAGTAGATGCTCAATGGCTTTGAACAGCGCAAACATTAGCAAAAATCGATACACTGATGTTCTGCCATGTATGCAGATCAGTTTCTATCAATTCTTCGATTGATGTTGAAGTTGTGTATTATAACCTGTGAATAATTATATCAAGCTTCATTCTTCTCAGTTGACAATAACAGGGTTGTTTTGGACCCACCAGCTAGAGGATATATAAATGCAAGCTTCATTAAGGTAGACTTCTACGTCCATTACTTGAAATTAGTTAAGCATGCTACTTGCTTTTGATACTCTCTTGGAAAATGTCAAGCTCTCTTCCACCAATCTGCTTCATGAGCATTATAATGCTCCTTTTTGCTGTAGATATCTGAAGACGTGTCTCAGTTTATTGC--AACACAAGGTCCTCTACAACACACTTTTGAAGACTTCTGGGAAATGATAATCCAGCATCGCTGTCCTGTGATTGTGATGCTTACACAATTGTTTGACAACTACAAG</genome_strand>
        <mrna_strand>CGGAATCGGAGGCAGATATCAGCGATGGCCACCGCCGGTAAACTCGTGTCGTCGTCGTCGTCGTCACCCAAGCCTTTCGATTTCTCCGACGATTCAGTTCCTAAGAGAGTCGTTCTGTCGAGTGATCAGCAGCGTTATTGCTTGGAAGTACTCAAAGTCTTCAAGGACAAGAGGTTTTCTGCTCCCGAAAAAATCCGCCAAGAGTTCATGACGTTGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTAGGATGAGAGCTTCAGAAATGAAAAGTAGATGCTCAATGGCTTTGAACAGCGCAAACATTAGCAAAAATCGATACACTGATGTTCTGCCAT............................................................................................TTGACAATAACAGGGTTGTTTTGGACCCACCAGCTAGAGGATATATAAATGCAAGCTTCATTAAG.................................................................................................................................ATATCTGAAGACGTGTCTCAGTTTATTGCGGGGGGGAGGGTCCTCTACAACACACTTTTGAAGACTTCTGGGAAATGATAATCCAGCATCGCTGTCCTGTGATTGTGATGCTTACACAATTGTTTGACAACTACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200635" ref_strand="+" ref_description="SGN-E200635 [cLEC-9-G2]">
      <seq>tgaacagcgcaaacattagcaaaaatcgatacactgatgttctgccatttgacaataacagggttgttttggacccaccagctagaggatatataaatgcaagcttcattaagatatctgaagacgtgtctcagtttattgcaacacaaggtcctctacaacacacttttgaagacttctgggaaatgataatccagcatcgctgtcctgtgattgtgatgcttacacaattgtttgacaaactacaagattgtcaagtgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86856" stop="85776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86556" g_stop="86509" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86508" i_stop="86417" i_length="92">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86416" g_stop="86352" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="113" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86351" i_stop="86223" i_length="129">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86222" g_stop="86088" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="249" r_length="136" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E200635" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>248</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86556" e_stop="86509"/>
          <exon e_start="86416" e_stop="86352"/>
          <exon e_start="86222" e_stop="86088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACAGCGCAAACATTAGCAAAAATCGATACACTGATGTTCTGCCATGTATGCAGATCAGTTTCTATCAATTCTTCGATTGATGTTGAAGTTGTGTATTATAACCTGTGAATAATTATATCAAGCTTCATTCTTCTCAGTTGACAATAACAGGGTTGTTTTGGACCCACCAGCTAGAGGATATATAAATGCAAGCTTCATTAAGGTAGACTTCTACGTCCATTACTTGAAATTAGTTAAGCATGCTACTTGCTTTTGATACTCTCTTGGAAAATGTCAAGCTCTCTTCCACCAATCTGCTTCATGAGCATTATAATGCTCCTTTTTGCTGTAGATATCTGAAGACGTGTCTCAGTTTATTGCAACACAAGGTCCTCTACAACACACTTTTGAAGACTTCTGGGAAATGATAATCCAGCATCGCTGTCCTGTGATTGTGATGCTTACACAATTGTTTGAC-AACTACAAG</genome_strand>
        <mrna_strand>TGAACAGCGCAAACATTAGCAAAAATCGATACACTGATGTTCTGCCAT............................................................................................TTGACAATAACAGGGTTGTTTTGGACCCACCAGCTAGAGGATATATAAATGCAAGCTTCATTAAG.................................................................................................................................ATATCTGAAGACGTGTCTCAGTTTATTGCAACACAAGGTCCTCTACAACACACTTTTGAAGACTTCTGGGAAATGATAATCCAGCATCGCTGTCCTGTGATTGTGATGCTTACACAATTGTTTGACAAACTACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299376" ref_strand="+" ref_description="SGN-E299376 [cLET-43-K19]">
      <seq>gaaagtgcgtacaaagaaagcagtgaagtgaacatcctaccacggggtgcggactgtccattcggaatcggaggcagatatcagcgatggccaccgccggtaaactcgtgtcgtcgtcgtcgtcgtcacccaagcctttcgatttctccgacgattcagttcctaagagagtcgttctgtcgagtgatcagcagcgttattgcttggaagtactcaaagtcttcaaggacaagaggttttctgctcccgaaaaaatccgccaagagttcatgacgttgcaggcaactaggatgagagcttcagaaatgaaaagtacatgctcaatggctttgaacagcgcaaacattagcaaaaatcgatacactgatgttctgccatttgacaataacagggttgttttggacccaccagctagaggatatataaatgcaagcttcattaagatatctgaagacgtgtctcagtttattgcaacacaaggtcctctacaacacacttttgaagacttctgggaaatgataatccagcatcgctgtcctgtgattgtgatgcttacacaattgtttgacaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90063" stop="85792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89763" g_stop="89483" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89482" i_stop="86606" i_length="2877">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.637" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86605" g_stop="86509" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="378" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86508" i_stop="86417" i_length="92">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86416" g_stop="86352" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="443" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86351" i_stop="86223" i_length="129">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86222" g_stop="86092" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="574" r_length="131" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E299376" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89763" e_stop="89483"/>
          <exon e_start="86605" e_stop="86509"/>
          <exon e_start="86416" e_stop="86352"/>
          <exon e_start="86222" e_stop="86092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGTGCGTACAAAGAAAGCAGTGAAGTGAACATCCTACCACGGGGTGCGGACTGTCCATTCGGAATCGGAGGCAGATATCAGCGATGGCCACCGCCGGTAAACTCGTGTCGTCGTCGTCGTCGTCACCCAAGCCTTTCGATTTCTCCGACGATTCAGTTCCTAAGAGAGTCGTTCTGTCGAGTGATCAGCAGCGTTATTGCTTGGAAGTACTCAAAGTCTTCAAGGACAAGAGGTTTTCTGCTCCCGAAAAAATCCGCCAAGAGTTCATGACGTTGCAGGTCCGTTTGCATTATACTCTCTTTCTTTCTCAATTTTATTGTTATTTAATGTTGTGCTTTTTCATAAAAGAGGAGGGTATTTATTCAATTGGTCAATTTTTTTGAAGAATATTTTCTCAAGTTACTCGAAGAATGATGAAAATAACTTCCAAAACAGGTTCTACAAGTGATGTGTACCTCTGTCTTTGAAGAAACAGAGGAGGGGGGCCAGTTTAGGAGTCTCATTTTTTTGATTCATTCATTCATAAGAGTGTATGATAAGAAAAAGTCCTCCAACACACCTCATCTTTACCTCCGTTATTTGTCTATATTATATACAAATGCTTTTAGTATAGTATATTTTGCTAAGTACTATACACGAGAAAATAAGTTACAAATCCACTTATTTCCTGGAAAACTATTTCCTTCATACAGAATACACCCGAAATGTTGAATTTGGGATATATGAGATGGATCCAAACAGAGTGAGATGGATATAAAGTATTCTTAGTCCATGTTCAACTAGTTAGGGAATATGGTGGAGTTGATTGACGTGTGATGATTATTTGATTTTTAGTTGGATATTCACAGTCATATTATCATATATCAATTAGAAAAACCAAGTCTTTCTATGCTAAGAATGAGTTGCTGTCGTCATTGGACTTTTCAACGTTTCTTCTTCACATAGGTGGTTCCATTCTTGGAAAATTGTGGTAGTTTGAATGCTTCAAACAGCAAATTCATTGGAACGTATTAAATGGTTCATATTAATCGATATGTATATAGAGGATTTATGCTATGGACTCCAGGTAATTTAGAATTAAGATTTAGTTGATAAATTGACTGATTGAAGTGTTGGTAAATTGTTTGAGTTCTAGTTGGATTTTTACTGTCATACTATTTTGAAAAGGGAAATCACTTACTCCTTGTAGGATGACTGTCAACCTTAACTAGGTGATAACATCATGAAGGCTTTAGGCATTTAATTCATTACGTCATATGAAATAGGCTGAAGTTAGTTGATCTTGAGCCGACTACTAGTAGTTAGGGATCGAGAAGTAGTTAACCGGTTGATTGATTGATTCAAAGTTTTGGGTGATATTGATGACGTCAATTTATTCGATTCAAACACAATACACATAACATTTTTCCAAAGTGGGAATATAACTAAGTTAAAGACTTAGCGCTTCTAATATTCTGACATATGCTATTTTGAAACATCTCCTACTGTGTTCAATCATAATTTTAAGCTCTCAGCATTAGCATGTGTTGTAGTATGTTTTACAGGATTCTACAATCTATACCATATCGCTAGCCTTTCCTCTCTGAATTTGTACATCTTTTCACTACAATTAGTGTCTCCTTGAGATATAGCATCTTTTTTTTTTTCGATTGGTAAAAGTAATTTGATTCAACAAAATGCTCTTTCTGGTATAGAATTTTTGCAGCATTCTTCCCCTCATTTCACTTATCCTATGCTAATATGATAATCCAAAACTTGTTGCTTCTCATTTAACATTCTTTATGTTTTCTTGTAGGTAATCATGCTTAGAAGATTAGAGTTAGAATTTGTTTCCACGTGAAAAAAGGACTAGTTCTTTTTCCTTTCAAAGAGTAATTATTTATTGATCCCGCTTAGGGATTACACTGGGTATGTTGTTGTATGTGAAAGCTCATACTAGGGTATAGGAGAAGTAAAGAAGTTCTGCAAAAATACAGTTCTCTATGAACAACATCTAGTTAGTATAACTCTGTACTACCAGAGGTTTTATGTTCTCTCTTAAATTTACTAGAAACAACATATTTGCCTTAATTTGCATGAGAATACCTTTTTATCGGTAATTTGTATAACAGTATTATTCTCCCCTCGGAAACTCCATTCCTTTCTCTCCTATTACCCACATTTGGACAGACCAGGTTACATTCCTGCTCTCTATCTCCGTTTCCTTCTTTCTTCTAAAGCTCCAACTGAACATGAGATCTTTCCTTGTATATGCTATTGCCTACTGAACGCCAAAGGGATTCAATACTACGCACTTTAATCAACTTTCTAATGGGCAATGCGTGAGCAAGTGATCCACATCTGCGCAGGATTGTTTACACATATAGCACCAGCTATTTTGTCCTAACTTCCGTTTGCTCAAGTTCTCTGCAGTAAGGATGACTACCCTTGCTGTTGCTGGAAAACATACCTTCATCAGAGCTCTAGGAATCCAGATTGAGATCTGTGGGAGAATTATGTGTTTTCTTTTTAGTAGTCTGTCGTAGGACTACTTAAGTCCAAAATTCCTCATGCTTGCCCATTCCATAACTAAGAATTCTGACCTGTTGGTGTGATGTTTTGCTTTTAAATAGGTTGTGGAACTCACCTATCTCCCACAGCTGTAATGATCAAGTTGCTTAGTTTTGTTGTTACATTTCAGAGAGTAATATTGTTACTTTTTTGAGATCCGGAATGTATTAGGAAGACCTTGCTCAAAGTATCAACTCCGAAAAGCAAAAATGGAGGCATATTGGGAGTTAGGTGGTCTTAACTCTTAAGTGTCTATATGAAGCAAAATAACACCTTTAGATAGTTTTAAGAAAATATTGAGAAGCTTCTTTGATGGTTGAGTTCATTTATGTAATGTTTCCCGCTCTCATTTAAATCTAGTTTCCAAAAAAAAAAATCAAAATCCAAGCATCTTTTTTATGATGTTTTGGGTAGATGCTGGTGGTGGTGACTCCACTTAAAATGAGCTAAATTTATGTGAAAGGACAGCTCTCTTATGTCTTGAGAAAGTTGTTGTTGCATGATGTTGTTTGTTTTGCTTCTTTGTTATTTACTTGTTGAGATCTTGGCTTTCTGTAAGTAGCATGATGTTATCCTGAATTCCAAGAACACCTCTTATGACTCAGGCAACTAGGATGAGAGCTTCAGAAATGAAAAGTAGATGCTCAATGGCTTTGAACAGCGCAAACATTAGCAAAAATCGATACACTGATGTTCTGCCATGTATGCAGATCAGTTTCTATCAATTCTTCGATTGATGTTGAAGTTGTGTATTATAACCTGTGAATAATTATATCAAGCTTCATTCTTCTCAGTTGACAATAACAGGGTTGTTTTGGACCCACCAGCTAGAGGATATATAAATGCAAGCTTCATTAAGGTAGACTTCTACGTCCATTACTTGAAATTAGTTAAGCATGCTACTTGCTTTTGATACTCTCTTGGAAAATGTCAAGCTCTCTTCCACCAATCTGCTTCATGAGCATTATAATGCTCCTTTTTGCTGTAGATATCTGAAGACGTGTCTCAGTTTATTGCAACACAAGGTCCTCTACAACACACTTTTGAAGACTTCTGGGAAATGATAATCCAGCATCGCTGTCCTGTGATTGTGATGCTTACACAATTGTTTGACAACTA</genome_strand>
        <mrna_strand>GAAAGTGCGTACAAAGAAAGCAGTGAAGTGAACATCCTACCACGGGGTGCGGACTGTCCATTCGGAATCGGAGGCAGATATCAGCGATGGCCACCGCCGGTAAACTCGTGTCGTCGTCGTCGTCGTCACCCAAGCCTTTCGATTTCTCCGACGATTCAGTTCCTAAGAGAGTCGTTCTGTCGAGTGATCAGCAGCGTTATTGCTTGGAAGTACTCAAAGTCTTCAAGGACAAGAGGTTTTCTGCTCCCGAAAAAATCCGCCAAGAGTTCATGACGTTGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTAGGATGAGAGCTTCAGAAATGAAAAGTACATGCTCAATGGCTTTGAACAGCGCAAACATTAGCAAAAATCGATACACTGATGTTCTGCCAT............................................................................................TTGACAATAACAGGGTTGTTTTGGACCCACCAGCTAGAGGATATATAAATGCAAGCTTCATTAAG.................................................................................................................................ATATCTGAAGACGTGTCTCAGTTTATTGCAACACAAGGTCCTCTACAACACACTTTTGAAGACTTCTGGGAAATGATAATCCAGCATCGCTGTCCTGTGATTGTGATGCTTACACAATTGTTTGACAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268598" ref_strand="+" ref_description="SGN-E268598 [cLEI-13-N9]">
      <seq>tcgtgtcgtcgtcgtcgtcgtcacccaagcctttcgatttctccgacgattcagttcctaagagagtcgttctgtcgagtgatcagcagcgttattgcttggaagtactcaaagtcttcaaggaccaagaggttttctgctcccgaaaaaatccgccaagagttcatgacgttgcaggcaactaggatgagagcttcagaaatgaaaagtagatgctcaatggctttgaacagcgcaaacattagcaaaaatcgatacactgatgttctgccatttgacaataacagggttgttttggacccaccagctagaggatatataaatgcaagcttcattaagaaatctgaagaacgtgtctcagtttattgcaacacaaggtcctctacaacacacttttgaagacttctgggaaatgataatccagcatcgctgtcctgtgattgtgatgcttacacaattgtttgacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="89958" stop="85794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89658" g_stop="89483" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89482" i_stop="86606" i_length="2877">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.637" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86605" g_stop="86509" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="274" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86508" i_stop="86417" i_length="92">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86416" g_stop="86352" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="339" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86351" i_stop="86223" i_length="129">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86222" g_stop="86094" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="469" r_length="130" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E268598" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89658" e_stop="89483"/>
          <exon e_start="86605" e_stop="86509"/>
          <exon e_start="86416" e_stop="86352"/>
          <exon e_start="86222" e_stop="86094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTGTCGTCGTCGTCGTCGTCACCCAAGCCTTTCGATTTCTCCGACGATTCAGTTCCTAAGAGAGTCGTTCTGTCGAGTGATCAGCAGCGTTATTGCTTGGAAGTACTCAAAGTCTTCAAGGA-CAAGAGGTTTTCTGCTCCCGAAAAAATCCGCCAAGAGTTCATGACGTTGCAGGTCCGTTTGCATTATACTCTCTTTCTTTCTCAATTTTATTGTTATTTAATGTTGTGCTTTTTCATAAAAGAGGAGGGTATTTATTCAATTGGTCAATTTTTTTGAAGAATATTTTCTCAAGTTACTCGAAGAATGATGAAAATAACTTCCAAAACAGGTTCTACAAGTGATGTGTACCTCTGTCTTTGAAGAAACAGAGGAGGGGGGCCAGTTTAGGAGTCTCATTTTTTTGATTCATTCATTCATAAGAGTGTATGATAAGAAAAAGTCCTCCAACACACCTCATCTTTACCTCCGTTATTTGTCTATATTATATACAAATGCTTTTAGTATAGTATATTTTGCTAAGTACTATACACGAGAAAATAAGTTACAAATCCACTTATTTCCTGGAAAACTATTTCCTTCATACAGAATACACCCGAAATGTTGAATTTGGGATATATGAGATGGATCCAAACAGAGTGAGATGGATATAAAGTATTCTTAGTCCATGTTCAACTAGTTAGGGAATATGGTGGAGTTGATTGACGTGTGATGATTATTTGATTTTTAGTTGGATATTCACAGTCATATTATCATATATCAATTAGAAAAACCAAGTCTTTCTATGCTAAGAATGAGTTGCTGTCGTCATTGGACTTTTCAACGTTTCTTCTTCACATAGGTGGTTCCATTCTTGGAAAATTGTGGTAGTTTGAATGCTTCAAACAGCAAATTCATTGGAACGTATTAAATGGTTCATATTAATCGATATGTATATAGAGGATTTATGCTATGGACTCCAGGTAATTTAGAATTAAGATTTAGTTGATAAATTGACTGATTGAAGTGTTGGTAAATTGTTTGAGTTCTAGTTGGATTTTTACTGTCATACTATTTTGAAAAGGGAAATCACTTACTCCTTGTAGGATGACTGTCAACCTTAACTAGGTGATAACATCATGAAGGCTTTAGGCATTTAATTCATTACGTCATATGAAATAGGCTGAAGTTAGTTGATCTTGAGCCGACTACTAGTAGTTAGGGATCGAGAAGTAGTTAACCGGTTGATTGATTGATTCAAAGTTTTGGGTGATATTGATGACGTCAATTTATTCGATTCAAACACAATACACATAACATTTTTCCAAAGTGGGAATATAACTAAGTTAAAGACTTAGCGCTTCTAATATTCTGACATATGCTATTTTGAAACATCTCCTACTGTGTTCAATCATAATTTTAAGCTCTCAGCATTAGCATGTGTTGTAGTATGTTTTACAGGATTCTACAATCTATACCATATCGCTAGCCTTTCCTCTCTGAATTTGTACATCTTTTCACTACAATTAGTGTCTCCTTGAGATATAGCATCTTTTTTTTTTTCGATTGGTAAAAGTAATTTGATTCAACAAAATGCTCTTTCTGGTATAGAATTTTTGCAGCATTCTTCCCCTCATTTCACTTATCCTATGCTAATATGATAATCCAAAACTTGTTGCTTCTCATTTAACATTCTTTATGTTTTCTTGTAGGTAATCATGCTTAGAAGATTAGAGTTAGAATTTGTTTCCACGTGAAAAAAGGACTAGTTCTTTTTCCTTTCAAAGAGTAATTATTTATTGATCCCGCTTAGGGATTACACTGGGTATGTTGTTGTATGTGAAAGCTCATACTAGGGTATAGGAGAAGTAAAGAAGTTCTGCAAAAATACAGTTCTCTATGAACAACATCTAGTTAGTATAACTCTGTACTACCAGAGGTTTTATGTTCTCTCTTAAATTTACTAGAAACAACATATTTGCCTTAATTTGCATGAGAATACCTTTTTATCGGTAATTTGTATAACAGTATTATTCTCCCCTCGGAAACTCCATTCCTTTCTCTCCTATTACCCACATTTGGACAGACCAGGTTACATTCCTGCTCTCTATCTCCGTTTCCTTCTTTCTTCTAAAGCTCCAACTGAACATGAGATCTTTCCTTGTATATGCTATTGCCTACTGAACGCCAAAGGGATTCAATACTACGCACTTTAATCAACTTTCTAATGGGCAATGCGTGAGCAAGTGATCCACATCTGCGCAGGATTGTTTACACATATAGCACCAGCTATTTTGTCCTAACTTCCGTTTGCTCAAGTTCTCTGCAGTAAGGATGACTACCCTTGCTGTTGCTGGAAAACATACCTTCATCAGAGCTCTAGGAATCCAGATTGAGATCTGTGGGAGAATTATGTGTTTTCTTTTTAGTAGTCTGTCGTAGGACTACTTAAGTCCAAAATTCCTCATGCTTGCCCATTCCATAACTAAGAATTCTGACCTGTTGGTGTGATGTTTTGCTTTTAAATAGGTTGTGGAACTCACCTATCTCCCACAGCTGTAATGATCAAGTTGCTTAGTTTTGTTGTTACATTTCAGAGAGTAATATTGTTACTTTTTTGAGATCCGGAATGTATTAGGAAGACCTTGCTCAAAGTATCAACTCCGAAAAGCAAAAATGGAGGCATATTGGGAGTTAGGTGGTCTTAACTCTTAAGTGTCTATATGAAGCAAAATAACACCTTTAGATAGTTTTAAGAAAATATTGAGAAGCTTCTTTGATGGTTGAGTTCATTTATGTAATGTTTCCCGCTCTCATTTAAATCTAGTTTCCAAAAAAAAAAATCAAAATCCAAGCATCTTTTTTATGATGTTTTGGGTAGATGCTGGTGGTGGTGACTCCACTTAAAATGAGCTAAATTTATGTGAAAGGACAGCTCTCTTATGTCTTGAGAAAGTTGTTGTTGCATGATGTTGTTTGTTTTGCTTCTTTGTTATTTACTTGTTGAGATCTTGGCTTTCTGTAAGTAGCATGATGTTATCCTGAATTCCAAGAACACCTCTTATGACTCAGGCAACTAGGATGAGAGCTTCAGAAATGAAAAGTAGATGCTCAATGGCTTTGAACAGCGCAAACATTAGCAAAAATCGATACACTGATGTTCTGCCATGTATGCAGATCAGTTTCTATCAATTCTTCGATTGATGTTGAAGTTGTGTATTATAACCTGTGAATAATTATATCAAGCTTCATTCTTCTCAGTTGACAATAACAGGGTTGTTTTGGACCCACCAGCTAGAGGATATATAAATGCAAGCTTCATTAAGGTAGACTTCTACGTCCATTACTTGAAATTAGTTAAGCATGCTACTTGCTTTTGATACTCTCTTGGAAAATGTCAAGCTCTCTTCCACCAATCTGCTTCATGAGCATTATAATGCTCCTTTTTGCTGTAGATATCTGAAG-ACGTGTCTCAGTTTATTGCAACACAAGGTCCTCTACAACACACTTTTGAAGACTTCTGGGAAATGATAATCCAGCATCGCTGTCCTGTGATTGTGATGCTTACACAATTGTTTGACAAC</genome_strand>
        <mrna_strand>TCGTGTCGTCGTCGTCGTCGTCACCCAAGCCTTTCGATTTCTCCGACGATTCAGTTCCTAAGAGAGTCGTTCTGTCGAGTGATCAGCAGCGTTATTGCTTGGAAGTACTCAAAGTCTTCAAGGACCAAGAGGTTTTCTGCTCCCGAAAAAATCCGCCAAGAGTTCATGACGTTGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTAGGATGAGAGCTTCAGAAATGAAAAGTAGATGCTCAATGGCTTTGAACAGCGCAAACATTAGCAAAAATCGATACACTGATGTTCTGCCAT............................................................................................TTGACAATAACAGGGTTGTTTTGGACCCACCAGCTAGAGGATATATAAATGCAAGCTTCATTAAG.................................................................................................................................AAATCTGAAGAACGTGTCTCAGTTTATTGCAACACAAGGTCCTCTACAACACACTTTTGAAGACTTCTGGGAAATGATAATCCAGCATCGCTGTCCTGTGATTGTGATGCTTACACAATTGTTTGACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233479" ref_strand="+" ref_description="SGN-E233479 [cLED-9-A13]">
      <seq>acatcctaccacggggtgcggactgtccattcggaatcggaggcagatatcagcgatggccaccgccggtaaactcgtgtcgtcgtcgtcgtcgtcacccaagcctttcgatttctccgacgattcagttcctaagagagtcgttctgtcgagtgatcagcagcgttattgcttggaagtactcaaagtcttcaaggacaagaggttttctgctcccgaaaaaatccgccaagagttcatgacgttgcaggcaactaggatgagagcttcagaaatgaaaagtagatgctcaatggctttgaacagcgcaaacattagcaaaaatcgatacactgatgttctgccatttgacaataacagggttgttttggacccaccagctagaggatatataaatgcaagcttcattaagatatctgaagacgtgtctcagtttattgcaacacaaggtcctctacaacacacttttgaagacttctgggaaatgataatccatcatcgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90032" stop="85832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89732" g_stop="89483" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89482" i_stop="86606" i_length="2877">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.637" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86605" g_stop="86509" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="347" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86508" i_stop="86417" i_length="92">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86416" g_stop="86352" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="412" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86351" i_stop="86223" i_length="129">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86222" g_stop="86132" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="503" r_length="91" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E233479" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89732" e_stop="89483"/>
          <exon e_start="86605" e_stop="86509"/>
          <exon e_start="86416" e_stop="86352"/>
          <exon e_start="86222" e_stop="86132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCCTACCACGGGGTGCGGACTGTCCATTCGGAATCGGAGGCAGATATCAGCGATGGCCACCGCCGGTAAACTCGTGTCGTCGTCGTCGTCGTCACCCAAGCCTTTCGATTTCTCCGACGATTCAGTTCCTAAGAGAGTCGTTCTGTCGAGTGATCAGCAGCGTTATTGCTTGGAAGTACTCAAAGTCTTCAAGGACAAGAGGTTTTCTGCTCCCGAAAAAATCCGCCAAGAGTTCATGACGTTGCAGGTCCGTTTGCATTATACTCTCTTTCTTTCTCAATTTTATTGTTATTTAATGTTGTGCTTTTTCATAAAAGAGGAGGGTATTTATTCAATTGGTCAATTTTTTTGAAGAATATTTTCTCAAGTTACTCGAAGAATGATGAAAATAACTTCCAAAACAGGTTCTACAAGTGATGTGTACCTCTGTCTTTGAAGAAACAGAGGAGGGGGGCCAGTTTAGGAGTCTCATTTTTTTGATTCATTCATTCATAAGAGTGTATGATAAGAAAAAGTCCTCCAACACACCTCATCTTTACCTCCGTTATTTGTCTATATTATATACAAATGCTTTTAGTATAGTATATTTTGCTAAGTACTATACACGAGAAAATAAGTTACAAATCCACTTATTTCCTGGAAAACTATTTCCTTCATACAGAATACACCCGAAATGTTGAATTTGGGATATATGAGATGGATCCAAACAGAGTGAGATGGATATAAAGTATTCTTAGTCCATGTTCAACTAGTTAGGGAATATGGTGGAGTTGATTGACGTGTGATGATTATTTGATTTTTAGTTGGATATTCACAGTCATATTATCATATATCAATTAGAAAAACCAAGTCTTTCTATGCTAAGAATGAGTTGCTGTCGTCATTGGACTTTTCAACGTTTCTTCTTCACATAGGTGGTTCCATTCTTGGAAAATTGTGGTAGTTTGAATGCTTCAAACAGCAAATTCATTGGAACGTATTAAATGGTTCATATTAATCGATATGTATATAGAGGATTTATGCTATGGACTCCAGGTAATTTAGAATTAAGATTTAGTTGATAAATTGACTGATTGAAGTGTTGGTAAATTGTTTGAGTTCTAGTTGGATTTTTACTGTCATACTATTTTGAAAAGGGAAATCACTTACTCCTTGTAGGATGACTGTCAACCTTAACTAGGTGATAACATCATGAAGGCTTTAGGCATTTAATTCATTACGTCATATGAAATAGGCTGAAGTTAGTTGATCTTGAGCCGACTACTAGTAGTTAGGGATCGAGAAGTAGTTAACCGGTTGATTGATTGATTCAAAGTTTTGGGTGATATTGATGACGTCAATTTATTCGATTCAAACACAATACACATAACATTTTTCCAAAGTGGGAATATAACTAAGTTAAAGACTTAGCGCTTCTAATATTCTGACATATGCTATTTTGAAACATCTCCTACTGTGTTCAATCATAATTTTAAGCTCTCAGCATTAGCATGTGTTGTAGTATGTTTTACAGGATTCTACAATCTATACCATATCGCTAGCCTTTCCTCTCTGAATTTGTACATCTTTTCACTACAATTAGTGTCTCCTTGAGATATAGCATCTTTTTTTTTTTCGATTGGTAAAAGTAATTTGATTCAACAAAATGCTCTTTCTGGTATAGAATTTTTGCAGCATTCTTCCCCTCATTTCACTTATCCTATGCTAATATGATAATCCAAAACTTGTTGCTTCTCATTTAACATTCTTTATGTTTTCTTGTAGGTAATCATGCTTAGAAGATTAGAGTTAGAATTTGTTTCCACGTGAAAAAAGGACTAGTTCTTTTTCCTTTCAAAGAGTAATTATTTATTGATCCCGCTTAGGGATTACACTGGGTATGTTGTTGTATGTGAAAGCTCATACTAGGGTATAGGAGAAGTAAAGAAGTTCTGCAAAAATACAGTTCTCTATGAACAACATCTAGTTAGTATAACTCTGTACTACCAGAGGTTTTATGTTCTCTCTTAAATTTACTAGAAACAACATATTTGCCTTAATTTGCATGAGAATACCTTTTTATCGGTAATTTGTATAACAGTATTATTCTCCCCTCGGAAACTCCATTCCTTTCTCTCCTATTACCCACATTTGGACAGACCAGGTTACATTCCTGCTCTCTATCTCCGTTTCCTTCTTTCTTCTAAAGCTCCAACTGAACATGAGATCTTTCCTTGTATATGCTATTGCCTACTGAACGCCAAAGGGATTCAATACTACGCACTTTAATCAACTTTCTAATGGGCAATGCGTGAGCAAGTGATCCACATCTGCGCAGGATTGTTTACACATATAGCACCAGCTATTTTGTCCTAACTTCCGTTTGCTCAAGTTCTCTGCAGTAAGGATGACTACCCTTGCTGTTGCTGGAAAACATACCTTCATCAGAGCTCTAGGAATCCAGATTGAGATCTGTGGGAGAATTATGTGTTTTCTTTTTAGTAGTCTGTCGTAGGACTACTTAAGTCCAAAATTCCTCATGCTTGCCCATTCCATAACTAAGAATTCTGACCTGTTGGTGTGATGTTTTGCTTTTAAATAGGTTGTGGAACTCACCTATCTCCCACAGCTGTAATGATCAAGTTGCTTAGTTTTGTTGTTACATTTCAGAGAGTAATATTGTTACTTTTTTGAGATCCGGAATGTATTAGGAAGACCTTGCTCAAAGTATCAACTCCGAAAAGCAAAAATGGAGGCATATTGGGAGTTAGGTGGTCTTAACTCTTAAGTGTCTATATGAAGCAAAATAACACCTTTAGATAGTTTTAAGAAAATATTGAGAAGCTTCTTTGATGGTTGAGTTCATTTATGTAATGTTTCCCGCTCTCATTTAAATCTAGTTTCCAAAAAAAAAAATCAAAATCCAAGCATCTTTTTTATGATGTTTTGGGTAGATGCTGGTGGTGGTGACTCCACTTAAAATGAGCTAAATTTATGTGAAAGGACAGCTCTCTTATGTCTTGAGAAAGTTGTTGTTGCATGATGTTGTTTGTTTTGCTTCTTTGTTATTTACTTGTTGAGATCTTGGCTTTCTGTAAGTAGCATGATGTTATCCTGAATTCCAAGAACACCTCTTATGACTCAGGCAACTAGGATGAGAGCTTCAGAAATGAAAAGTAGATGCTCAATGGCTTTGAACAGCGCAAACATTAGCAAAAATCGATACACTGATGTTCTGCCATGTATGCAGATCAGTTTCTATCAATTCTTCGATTGATGTTGAAGTTGTGTATTATAACCTGTGAATAATTATATCAAGCTTCATTCTTCTCAGTTGACAATAACAGGGTTGTTTTGGACCCACCAGCTAGAGGATATATAAATGCAAGCTTCATTAAGGTAGACTTCTACGTCCATTACTTGAAATTAGTTAAGCATGCTACTTGCTTTTGATACTCTCTTGGAAAATGTCAAGCTCTCTTCCACCAATCTGCTTCATGAGCATTATAATGCTCCTTTTTGCTGTAGATATCTGAAGACGTGTCTCAGTTTATTGCAACACAAGGTCCTCTACAACACACTTTTGAAGACTTCTGGGAAATGATAATCCAGCATCGCT</genome_strand>
        <mrna_strand>ACATCCTACCACGGGGTGCGGACTGTCCATTCGGAATCGGAGGCAGATATCAGCGATGGCCACCGCCGGTAAACTCGTGTCGTCGTCGTCGTCGTCACCCAAGCCTTTCGATTTCTCCGACGATTCAGTTCCTAAGAGAGTCGTTCTGTCGAGTGATCAGCAGCGTTATTGCTTGGAAGTACTCAAAGTCTTCAAGGACAAGAGGTTTTCTGCTCCCGAAAAAATCCGCCAAGAGTTCATGACGTTGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTAGGATGAGAGCTTCAGAAATGAAAAGTAGATGCTCAATGGCTTTGAACAGCGCAAACATTAGCAAAAATCGATACACTGATGTTCTGCCAT............................................................................................TTGACAATAACAGGGTTGTTTTGGACCCACCAGCTAGAGGATATATAAATGCAAGCTTCATTAAG.................................................................................................................................ATATCTGAAGACGTGTCTCAGTTTATTGCAACACAAGGTCCTCTACAACACACTTTTGAAGACTTCTGGGAAATGATAATCCATCATCGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210413" ref_strand="+" ref_description="SGN-E210413 [cLEC-35-A17]">
      <seq>ggaatcggaggcagatatcagcgatggccaccgccggtaaactcgtgtcgtcgtcgtcgtcgtcacccaagcctttcgatttctccgacgattcagttcctaagagagtcgttctgtcgagtgatcagcagcgttattgcttggaagtactcaaagtcttcaaggacaagaggttttctgctcccgaaaaaatccgccaagagttcatgacgttgcaggcaactaggatgagagcttcagaaatgaaaagtagatgctcaatggctttgaacagcgcaaacattagcaaaaatcgatacactgatgttctgccatttgacaataacagggttgttttggacccaccagctagaggatatataaatgcaagcttcattaagatatctgaagacgtgtctcagtttattgcaacacaaggtcctctacaacacacttttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90000" stop="85864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89700" g_stop="89483" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89482" i_stop="86606" i_length="2877">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.637" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86605" g_stop="86509" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="315" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86508" i_stop="86417" i_length="92">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86416" g_stop="86352" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="380" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86351" i_stop="86223" i_length="129">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86222" g_stop="86164" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="439" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E210413" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89700" e_stop="89483"/>
          <exon e_start="86605" e_stop="86509"/>
          <exon e_start="86416" e_stop="86352"/>
          <exon e_start="86222" e_stop="86164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATCGGAGGCAGATATCAGCGATGGCCACCGCCGGTAAACTCGTGTCGTCGTCGTCGTCGTCACCCAAGCCTTTCGATTTCTCCGACGATTCAGTTCCTAAGAGAGTCGTTCTGTCGAGTGATCAGCAGCGTTATTGCTTGGAAGTACTCAAAGTCTTCAAGGACAAGAGGTTTTCTGCTCCCGAAAAAATCCGCCAAGAGTTCATGACGTTGCAGGTCCGTTTGCATTATACTCTCTTTCTTTCTCAATTTTATTGTTATTTAATGTTGTGCTTTTTCATAAAAGAGGAGGGTATTTATTCAATTGGTCAATTTTTTTGAAGAATATTTTCTCAAGTTACTCGAAGAATGATGAAAATAACTTCCAAAACAGGTTCTACAAGTGATGTGTACCTCTGTCTTTGAAGAAACAGAGGAGGGGGGCCAGTTTAGGAGTCTCATTTTTTTGATTCATTCATTCATAAGAGTGTATGATAAGAAAAAGTCCTCCAACACACCTCATCTTTACCTCCGTTATTTGTCTATATTATATACAAATGCTTTTAGTATAGTATATTTTGCTAAGTACTATACACGAGAAAATAAGTTACAAATCCACTTATTTCCTGGAAAACTATTTCCTTCATACAGAATACACCCGAAATGTTGAATTTGGGATATATGAGATGGATCCAAACAGAGTGAGATGGATATAAAGTATTCTTAGTCCATGTTCAACTAGTTAGGGAATATGGTGGAGTTGATTGACGTGTGATGATTATTTGATTTTTAGTTGGATATTCACAGTCATATTATCATATATCAATTAGAAAAACCAAGTCTTTCTATGCTAAGAATGAGTTGCTGTCGTCATTGGACTTTTCAACGTTTCTTCTTCACATAGGTGGTTCCATTCTTGGAAAATTGTGGTAGTTTGAATGCTTCAAACAGCAAATTCATTGGAACGTATTAAATGGTTCATATTAATCGATATGTATATAGAGGATTTATGCTATGGACTCCAGGTAATTTAGAATTAAGATTTAGTTGATAAATTGACTGATTGAAGTGTTGGTAAATTGTTTGAGTTCTAGTTGGATTTTTACTGTCATACTATTTTGAAAAGGGAAATCACTTACTCCTTGTAGGATGACTGTCAACCTTAACTAGGTGATAACATCATGAAGGCTTTAGGCATTTAATTCATTACGTCATATGAAATAGGCTGAAGTTAGTTGATCTTGAGCCGACTACTAGTAGTTAGGGATCGAGAAGTAGTTAACCGGTTGATTGATTGATTCAAAGTTTTGGGTGATATTGATGACGTCAATTTATTCGATTCAAACACAATACACATAACATTTTTCCAAAGTGGGAATATAACTAAGTTAAAGACTTAGCGCTTCTAATATTCTGACATATGCTATTTTGAAACATCTCCTACTGTGTTCAATCATAATTTTAAGCTCTCAGCATTAGCATGTGTTGTAGTATGTTTTACAGGATTCTACAATCTATACCATATCGCTAGCCTTTCCTCTCTGAATTTGTACATCTTTTCACTACAATTAGTGTCTCCTTGAGATATAGCATCTTTTTTTTTTTCGATTGGTAAAAGTAATTTGATTCAACAAAATGCTCTTTCTGGTATAGAATTTTTGCAGCATTCTTCCCCTCATTTCACTTATCCTATGCTAATATGATAATCCAAAACTTGTTGCTTCTCATTTAACATTCTTTATGTTTTCTTGTAGGTAATCATGCTTAGAAGATTAGAGTTAGAATTTGTTTCCACGTGAAAAAAGGACTAGTTCTTTTTCCTTTCAAAGAGTAATTATTTATTGATCCCGCTTAGGGATTACACTGGGTATGTTGTTGTATGTGAAAGCTCATACTAGGGTATAGGAGAAGTAAAGAAGTTCTGCAAAAATACAGTTCTCTATGAACAACATCTAGTTAGTATAACTCTGTACTACCAGAGGTTTTATGTTCTCTCTTAAATTTACTAGAAACAACATATTTGCCTTAATTTGCATGAGAATACCTTTTTATCGGTAATTTGTATAACAGTATTATTCTCCCCTCGGAAACTCCATTCCTTTCTCTCCTATTACCCACATTTGGACAGACCAGGTTACATTCCTGCTCTCTATCTCCGTTTCCTTCTTTCTTCTAAAGCTCCAACTGAACATGAGATCTTTCCTTGTATATGCTATTGCCTACTGAACGCCAAAGGGATTCAATACTACGCACTTTAATCAACTTTCTAATGGGCAATGCGTGAGCAAGTGATCCACATCTGCGCAGGATTGTTTACACATATAGCACCAGCTATTTTGTCCTAACTTCCGTTTGCTCAAGTTCTCTGCAGTAAGGATGACTACCCTTGCTGTTGCTGGAAAACATACCTTCATCAGAGCTCTAGGAATCCAGATTGAGATCTGTGGGAGAATTATGTGTTTTCTTTTTAGTAGTCTGTCGTAGGACTACTTAAGTCCAAAATTCCTCATGCTTGCCCATTCCATAACTAAGAATTCTGACCTGTTGGTGTGATGTTTTGCTTTTAAATAGGTTGTGGAACTCACCTATCTCCCACAGCTGTAATGATCAAGTTGCTTAGTTTTGTTGTTACATTTCAGAGAGTAATATTGTTACTTTTTTGAGATCCGGAATGTATTAGGAAGACCTTGCTCAAAGTATCAACTCCGAAAAGCAAAAATGGAGGCATATTGGGAGTTAGGTGGTCTTAACTCTTAAGTGTCTATATGAAGCAAAATAACACCTTTAGATAGTTTTAAGAAAATATTGAGAAGCTTCTTTGATGGTTGAGTTCATTTATGTAATGTTTCCCGCTCTCATTTAAATCTAGTTTCCAAAAAAAAAAATCAAAATCCAAGCATCTTTTTTATGATGTTTTGGGTAGATGCTGGTGGTGGTGACTCCACTTAAAATGAGCTAAATTTATGTGAAAGGACAGCTCTCTTATGTCTTGAGAAAGTTGTTGTTGCATGATGTTGTTTGTTTTGCTTCTTTGTTATTTACTTGTTGAGATCTTGGCTTTCTGTAAGTAGCATGATGTTATCCTGAATTCCAAGAACACCTCTTATGACTCAGGCAACTAGGATGAGAGCTTCAGAAATGAAAAGTAGATGCTCAATGGCTTTGAACAGCGCAAACATTAGCAAAAATCGATACACTGATGTTCTGCCATGTATGCAGATCAGTTTCTATCAATTCTTCGATTGATGTTGAAGTTGTGTATTATAACCTGTGAATAATTATATCAAGCTTCATTCTTCTCAGTTGACAATAACAGGGTTGTTTTGGACCCACCAGCTAGAGGATATATAAATGCAAGCTTCATTAAGGTAGACTTCTACGTCCATTACTTGAAATTAGTTAAGCATGCTACTTGCTTTTGATACTCTCTTGGAAAATGTCAAGCTCTCTTCCACCAATCTGCTTCATGAGCATTATAATGCTCCTTTTTGCTGTAGATATCTGAAGACGTGTCTCAGTTTATTGCAACACAAGGTCCTCTACAACACACTTTTGA</genome_strand>
        <mrna_strand>GGAATCGGAGGCAGATATCAGCGATGGCCACCGCCGGTAAACTCGTGTCGTCGTCGTCGTCGTCACCCAAGCCTTTCGATTTCTCCGACGATTCAGTTCCTAAGAGAGTCGTTCTGTCGAGTGATCAGCAGCGTTATTGCTTGGAAGTACTCAAAGTCTTCAAGGACAAGAGGTTTTCTGCTCCCGAAAAAATCCGCCAAGAGTTCATGACGTTGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTAGGATGAGAGCTTCAGAAATGAAAAGTAGATGCTCAATGGCTTTGAACAGCGCAAACATTAGCAAAAATCGATACACTGATGTTCTGCCAT............................................................................................TTGACAATAACAGGGTTGTTTTGGACCCACCAGCTAGAGGATATATAAATGCAAGCTTCATTAAG.................................................................................................................................ATATCTGAAGACGTGTCTCAGTTTATTGCAACACAAGGTCCTCTACAACACACTTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E216892" ref_strand="-" ref_description="SGN-E216892 [cLEL-1-A5](-)">
      <seq>ggcctgattaacatcctaccacggggtgcggactgtccattcggaatcggaggcagatatcagcgatggccaccgccggtaaactcgtgtcgtcgtcgtcgtcgtcacccaagcctttcgatttctccgacgattcagttcctaagagagtcgttctgtcgagtgatcagcagcgttattgcttggaagtactcaaagtcttcaaggacaagaggttttctgctcccgaaaaaatccgccaagagttcatgacgttgcaggcaactaggatgagagcttcagaaatgaaaagtagatgctcaatggctttgaacagcgcaaacattagcaaaaatcgatacactgatgttctgccatttgacaataacagggttgttttggacccaccagctagaggatatataaatgcaagcttcattaagatatctgaagacgtgtctcagtttattgcaacacaaggtcctctacaacacactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90040" stop="85866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89744" g_stop="89483" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89482" i_stop="86606" i_length="2877">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.637" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86605" g_stop="86509" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="357" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86508" i_stop="86417" i_length="92">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86416" g_stop="86352" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="422" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86351" i_stop="86223" i_length="129">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86222" g_stop="86166" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="479" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E216892" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216892" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="89744" e_stop="89483"/>
          <exon e_start="86605" e_stop="86509"/>
          <exon e_start="86416" e_stop="86352"/>
          <exon e_start="86222" e_stop="86166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTGAAGTGAACATCCTACCACGGGGTGCGGACTGTCCATTCGGAATCGGAGGCAGATATCAGCGATGGCCACCGCCGGTAAACTCGTGTCGTCGTCGTCGTCGTCACCCAAGCCTTTCGATTTCTCCGACGATTCAGTTCCTAAGAGAGTCGTTCTGTCGAGTGATCAGCAGCGTTATTGCTTGGAAGTACTCAAAGTCTTCAAGGACAAGAGGTTTTCTGCTCCCGAAAAAATCCGCCAAGAGTTCATGACGTTGCAGGTCCGTTTGCATTATACTCTCTTTCTTTCTCAATTTTATTGTTATTTAATGTTGTGCTTTTTCATAAAAGAGGAGGGTATTTATTCAATTGGTCAATTTTTTTGAAGAATATTTTCTCAAGTTACTCGAAGAATGATGAAAATAACTTCCAAAACAGGTTCTACAAGTGATGTGTACCTCTGTCTTTGAAGAAACAGAGGAGGGGGGCCAGTTTAGGAGTCTCATTTTTTTGATTCATTCATTCATAAGAGTGTATGATAAGAAAAAGTCCTCCAACACACCTCATCTTTACCTCCGTTATTTGTCTATATTATATACAAATGCTTTTAGTATAGTATATTTTGCTAAGTACTATACACGAGAAAATAAGTTACAAATCCACTTATTTCCTGGAAAACTATTTCCTTCATACAGAATACACCCGAAATGTTGAATTTGGGATATATGAGATGGATCCAAACAGAGTGAGATGGATATAAAGTATTCTTAGTCCATGTTCAACTAGTTAGGGAATATGGTGGAGTTGATTGACGTGTGATGATTATTTGATTTTTAGTTGGATATTCACAGTCATATTATCATATATCAATTAGAAAAACCAAGTCTTTCTATGCTAAGAATGAGTTGCTGTCGTCATTGGACTTTTCAACGTTTCTTCTTCACATAGGTGGTTCCATTCTTGGAAAATTGTGGTAGTTTGAATGCTTCAAACAGCAAATTCATTGGAACGTATTAAATGGTTCATATTAATCGATATGTATATAGAGGATTTATGCTATGGACTCCAGGTAATTTAGAATTAAGATTTAGTTGATAAATTGACTGATTGAAGTGTTGGTAAATTGTTTGAGTTCTAGTTGGATTTTTACTGTCATACTATTTTGAAAAGGGAAATCACTTACTCCTTGTAGGATGACTGTCAACCTTAACTAGGTGATAACATCATGAAGGCTTTAGGCATTTAATTCATTACGTCATATGAAATAGGCTGAAGTTAGTTGATCTTGAGCCGACTACTAGTAGTTAGGGATCGAGAAGTAGTTAACCGGTTGATTGATTGATTCAAAGTTTTGGGTGATATTGATGACGTCAATTTATTCGATTCAAACACAATACACATAACATTTTTCCAAAGTGGGAATATAACTAAGTTAAAGACTTAGCGCTTCTAATATTCTGACATATGCTATTTTGAAACATCTCCTACTGTGTTCAATCATAATTTTAAGCTCTCAGCATTAGCATGTGTTGTAGTATGTTTTACAGGATTCTACAATCTATACCATATCGCTAGCCTTTCCTCTCTGAATTTGTACATCTTTTCACTACAATTAGTGTCTCCTTGAGATATAGCATCTTTTTTTTTTTCGATTGGTAAAAGTAATTTGATTCAACAAAATGCTCTTTCTGGTATAGAATTTTTGCAGCATTCTTCCCCTCATTTCACTTATCCTATGCTAATATGATAATCCAAAACTTGTTGCTTCTCATTTAACATTCTTTATGTTTTCTTGTAGGTAATCATGCTTAGAAGATTAGAGTTAGAATTTGTTTCCACGTGAAAAAAGGACTAGTTCTTTTTCCTTTCAAAGAGTAATTATTTATTGATCCCGCTTAGGGATTACACTGGGTATGTTGTTGTATGTGAAAGCTCATACTAGGGTATAGGAGAAGTAAAGAAGTTCTGCAAAAATACAGTTCTCTATGAACAACATCTAGTTAGTATAACTCTGTACTACCAGAGGTTTTATGTTCTCTCTTAAATTTACTAGAAACAACATATTTGCCTTAATTTGCATGAGAATACCTTTTTATCGGTAATTTGTATAACAGTATTATTCTCCCCTCGGAAACTCCATTCCTTTCTCTCCTATTACCCACATTTGGACAGACCAGGTTACATTCCTGCTCTCTATCTCCGTTTCCTTCTTTCTTCTAAAGCTCCAACTGAACATGAGATCTTTCCTTGTATATGCTATTGCCTACTGAACGCCAAAGGGATTCAATACTACGCACTTTAATCAACTTTCTAATGGGCAATGCGTGAGCAAGTGATCCACATCTGCGCAGGATTGTTTACACATATAGCACCAGCTATTTTGTCCTAACTTCCGTTTGCTCAAGTTCTCTGCAGTAAGGATGACTACCCTTGCTGTTGCTGGAAAACATACCTTCATCAGAGCTCTAGGAATCCAGATTGAGATCTGTGGGAGAATTATGTGTTTTCTTTTTAGTAGTCTGTCGTAGGACTACTTAAGTCCAAAATTCCTCATGCTTGCCCATTCCATAACTAAGAATTCTGACCTGTTGGTGTGATGTTTTGCTTTTAAATAGGTTGTGGAACTCACCTATCTCCCACAGCTGTAATGATCAAGTTGCTTAGTTTTGTTGTTACATTTCAGAGAGTAATATTGTTACTTTTTTGAGATCCGGAATGTATTAGGAAGACCTTGCTCAAAGTATCAACTCCGAAAAGCAAAAATGGAGGCATATTGGGAGTTAGGTGGTCTTAACTCTTAAGTGTCTATATGAAGCAAAATAACACCTTTAGATAGTTTTAAGAAAATATTGAGAAGCTTCTTTGATGGTTGAGTTCATTTATGTAATGTTTCCCGCTCTCATTTAAATCTAGTTTCCAAAAAAAAAAATCAAAATCCAAGCATCTTTTTTATGATGTTTTGGGTAGATGCTGGTGGTGGTGACTCCACTTAAAATGAGCTAAATTTATGTGAAAGGACAGCTCTCTTATGTCTTGAGAAAGTTGTTGTTGCATGATGTTGTTTGTTTTGCTTCTTTGTTATTTACTTGTTGAGATCTTGGCTTTCTGTAAGTAGCATGATGTTATCCTGAATTCCAAGAACACCTCTTATGACTCAGGCAACTAGGATGAGAGCTTCAGAAATGAAAAGTAGATGCTCAATGGCTTTGAACAGCGCAAACATTAGCAAAAATCGATACACTGATGTTCTGCCATGTATGCAGATCAGTTTCTATCAATTCTTCGATTGATGTTGAAGTTGTGTATTATAACCTGTGAATAATTATATCAAGCTTCATTCTTCTCAGTTGACAATAACAGGGTTGTTTTGGACCCACCAGCTAGAGGATATATAAATGCAAGCTTCATTAAGGTAGACTTCTACGTCCATTACTTGAAATTAGTTAAGCATGCTACTTGCTTTTGATACTCTCTTGGAAAATGTCAAGCTCTCTTCCACCAATCTGCTTCATGAGCATTATAATGCTCCTTTTTGCTGTAGATATCTGAAGACGTGTCTCAGTTTATTGCAACACAAGGTCCTCTACAACACACTTTT</genome_strand>
        <mrna_strand>GGCCTG-A-TTAACATCCTACCACGGGGTGCGGACTGTCCATTCGGAATCGGAGGCAGATATCAGCGATGGCCACCGCCGGTAAACTCGTGTCGTCGTCGTCGTCGTCACCCAAGCCTTTCGATTTCTCCGACGATTCAGTTCCTAAGAGAGTCGTTCTGTCGAGTGATCAGCAGCGTTATTGCTTGGAAGTACTCAAAGTCTTCAAGGACAAGAGGTTTTCTGCTCCCGAAAAAATCCGCCAAGAGTTCATGACGTTGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTAGGATGAGAGCTTCAGAAATGAAAAGTAGATGCTCAATGGCTTTGAACAGCGCAAACATTAGCAAAAATCGATACACTGATGTTCTGCCAT............................................................................................TTGACAATAACAGGGTTGTTTTGGACCCACCAGCTAGAGGATATATAAATGCAAGCTTCATTAAG.................................................................................................................................ATATCTGAAGACGTGTCTCAGTTTATTGCAACACAAGGTCCTCTACAACACACTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324292" ref_strand="+" ref_description="SGN-E324292 [cTOC-4-D16]">
      <seq>cggggtgcggactgtccattcggaatcggaggcagatatcagcgatggccaccgccggtaaactcgtgtcgtcgtcgtcgtcgtcacccaagcctttcgatttctccgacgattcagttcctaagaaagtcgttctgtcgagtgatcagcagcgttattgcttggaagtactcaaagtcttcaaggacaagaggttttctgctcccgaaaaaatccgccaagagttcatgacgttgcaggcaactaggatgagagcttcagaaatgaaaagtagatgctcaatggctttgaacagcgcaaacattagcaaaaatcgatacactgatgttctgccatttgacaataacagggttgttttggacccaccagctagaggatatataaatgcaagcttcattaagatatctgaagacgtgtctcagtttattgcaacacaaggtcctctacaacacacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90021" stop="85867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89721" g_stop="89483" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89482" i_stop="86606" i_length="2877">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.637" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86605" g_stop="86509" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="336" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86508" i_stop="86417" i_length="92">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86416" g_stop="86352" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="401" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86351" i_stop="86223" i_length="129">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86222" g_stop="86167" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="457" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E324292" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89721" e_stop="89483"/>
          <exon e_start="86605" e_stop="86509"/>
          <exon e_start="86416" e_stop="86352"/>
          <exon e_start="86222" e_stop="86167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGGGTGCGGACTGTCCATTCGGAATCGGAGGCAGATATCAGCGATGGCCACCGCCGGTAAACTCGTGTCGTCGTCGTCGTCGTCACCCAAGCCTTTCGATTTCTCCGACGATTCAGTTCCTAAGAGAGTCGTTCTGTCGAGTGATCAGCAGCGTTATTGCTTGGAAGTACTCAAAGTCTTCAAGGACAAGAGGTTTTCTGCTCCCGAAAAAATCCGCCAAGAGTTCATGACGTTGCAGGTCCGTTTGCATTATACTCTCTTTCTTTCTCAATTTTATTGTTATTTAATGTTGTGCTTTTTCATAAAAGAGGAGGGTATTTATTCAATTGGTCAATTTTTTTGAAGAATATTTTCTCAAGTTACTCGAAGAATGATGAAAATAACTTCCAAAACAGGTTCTACAAGTGATGTGTACCTCTGTCTTTGAAGAAACAGAGGAGGGGGGCCAGTTTAGGAGTCTCATTTTTTTGATTCATTCATTCATAAGAGTGTATGATAAGAAAAAGTCCTCCAACACACCTCATCTTTACCTCCGTTATTTGTCTATATTATATACAAATGCTTTTAGTATAGTATATTTTGCTAAGTACTATACACGAGAAAATAAGTTACAAATCCACTTATTTCCTGGAAAACTATTTCCTTCATACAGAATACACCCGAAATGTTGAATTTGGGATATATGAGATGGATCCAAACAGAGTGAGATGGATATAAAGTATTCTTAGTCCATGTTCAACTAGTTAGGGAATATGGTGGAGTTGATTGACGTGTGATGATTATTTGATTTTTAGTTGGATATTCACAGTCATATTATCATATATCAATTAGAAAAACCAAGTCTTTCTATGCTAAGAATGAGTTGCTGTCGTCATTGGACTTTTCAACGTTTCTTCTTCACATAGGTGGTTCCATTCTTGGAAAATTGTGGTAGTTTGAATGCTTCAAACAGCAAATTCATTGGAACGTATTAAATGGTTCATATTAATCGATATGTATATAGAGGATTTATGCTATGGACTCCAGGTAATTTAGAATTAAGATTTAGTTGATAAATTGACTGATTGAAGTGTTGGTAAATTGTTTGAGTTCTAGTTGGATTTTTACTGTCATACTATTTTGAAAAGGGAAATCACTTACTCCTTGTAGGATGACTGTCAACCTTAACTAGGTGATAACATCATGAAGGCTTTAGGCATTTAATTCATTACGTCATATGAAATAGGCTGAAGTTAGTTGATCTTGAGCCGACTACTAGTAGTTAGGGATCGAGAAGTAGTTAACCGGTTGATTGATTGATTCAAAGTTTTGGGTGATATTGATGACGTCAATTTATTCGATTCAAACACAATACACATAACATTTTTCCAAAGTGGGAATATAACTAAGTTAAAGACTTAGCGCTTCTAATATTCTGACATATGCTATTTTGAAACATCTCCTACTGTGTTCAATCATAATTTTAAGCTCTCAGCATTAGCATGTGTTGTAGTATGTTTTACAGGATTCTACAATCTATACCATATCGCTAGCCTTTCCTCTCTGAATTTGTACATCTTTTCACTACAATTAGTGTCTCCTTGAGATATAGCATCTTTTTTTTTTTCGATTGGTAAAAGTAATTTGATTCAACAAAATGCTCTTTCTGGTATAGAATTTTTGCAGCATTCTTCCCCTCATTTCACTTATCCTATGCTAATATGATAATCCAAAACTTGTTGCTTCTCATTTAACATTCTTTATGTTTTCTTGTAGGTAATCATGCTTAGAAGATTAGAGTTAGAATTTGTTTCCACGTGAAAAAAGGACTAGTTCTTTTTCCTTTCAAAGAGTAATTATTTATTGATCCCGCTTAGGGATTACACTGGGTATGTTGTTGTATGTGAAAGCTCATACTAGGGTATAGGAGAAGTAAAGAAGTTCTGCAAAAATACAGTTCTCTATGAACAACATCTAGTTAGTATAACTCTGTACTACCAGAGGTTTTATGTTCTCTCTTAAATTTACTAGAAACAACATATTTGCCTTAATTTGCATGAGAATACCTTTTTATCGGTAATTTGTATAACAGTATTATTCTCCCCTCGGAAACTCCATTCCTTTCTCTCCTATTACCCACATTTGGACAGACCAGGTTACATTCCTGCTCTCTATCTCCGTTTCCTTCTTTCTTCTAAAGCTCCAACTGAACATGAGATCTTTCCTTGTATATGCTATTGCCTACTGAACGCCAAAGGGATTCAATACTACGCACTTTAATCAACTTTCTAATGGGCAATGCGTGAGCAAGTGATCCACATCTGCGCAGGATTGTTTACACATATAGCACCAGCTATTTTGTCCTAACTTCCGTTTGCTCAAGTTCTCTGCAGTAAGGATGACTACCCTTGCTGTTGCTGGAAAACATACCTTCATCAGAGCTCTAGGAATCCAGATTGAGATCTGTGGGAGAATTATGTGTTTTCTTTTTAGTAGTCTGTCGTAGGACTACTTAAGTCCAAAATTCCTCATGCTTGCCCATTCCATAACTAAGAATTCTGACCTGTTGGTGTGATGTTTTGCTTTTAAATAGGTTGTGGAACTCACCTATCTCCCACAGCTGTAATGATCAAGTTGCTTAGTTTTGTTGTTACATTTCAGAGAGTAATATTGTTACTTTTTTGAGATCCGGAATGTATTAGGAAGACCTTGCTCAAAGTATCAACTCCGAAAAGCAAAAATGGAGGCATATTGGGAGTTAGGTGGTCTTAACTCTTAAGTGTCTATATGAAGCAAAATAACACCTTTAGATAGTTTTAAGAAAATATTGAGAAGCTTCTTTGATGGTTGAGTTCATTTATGTAATGTTTCCCGCTCTCATTTAAATCTAGTTTCCAAAAAAAAAAATCAAAATCCAAGCATCTTTTTTATGATGTTTTGGGTAGATGCTGGTGGTGGTGACTCCACTTAAAATGAGCTAAATTTATGTGAAAGGACAGCTCTCTTATGTCTTGAGAAAGTTGTTGTTGCATGATGTTGTTTGTTTTGCTTCTTTGTTATTTACTTGTTGAGATCTTGGCTTTCTGTAAGTAGCATGATGTTATCCTGAATTCCAAGAACACCTCTTATGACTCAGGCAACTAGGATGAGAGCTTCAGAAATGAAAAGTAGATGCTCAATGGCTTTGAACAGCGCAAACATTAGCAAAAATCGATACACTGATGTTCTGCCATGTATGCAGATCAGTTTCTATCAATTCTTCGATTGATGTTGAAGTTGTGTATTATAACCTGTGAATAATTATATCAAGCTTCATTCTTCTCAGTTGACAATAACAGGGTTGTTTTGGACCCACCAGCTAGAGGATATATAAATGCAAGCTTCATTAAGGTAGACTTCTACGTCCATTACTTGAAATTAGTTAAGCATGCTACTTGCTTTTGATACTCTCTTGGAAAATGTCAAGCTCTCTTCCACCAATCTGCTTCATGAGCATTATAATGCTCCTTTTTGCTGTAGATATCTGAAGACGTGTCTCAGTTTATTGCAACACAAGGTCCTCTACAACACACTTT</genome_strand>
        <mrna_strand>CGGGGTGCGGACTGTCCATTCGGAATCGGAGGCAGATATCAGCGATGGCCACCGCCGGTAAACTCGTGTCGTCGTCGTCGTCGTCACCCAAGCCTTTCGATTTCTCCGACGATTCAGTTCCTAAGAAAGTCGTTCTGTCGAGTGATCAGCAGCGTTATTGCTTGGAAGTACTCAAAGTCTTCAAGGACAAGAGGTTTTCTGCTCCCGAAAAAATCCGCCAAGAGTTCATGACGTTGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTAGGATGAGAGCTTCAGAAATGAAAAGTAGATGCTCAATGGCTTTGAACAGCGCAAACATTAGCAAAAATCGATACACTGATGTTCTGCCAT............................................................................................TTGACAATAACAGGGTTGTTTTGGACCCACCAGCTAGAGGATATATAAATGCAAGCTTCATTAAG.................................................................................................................................ATATCTGAAGACGTGTCTCAGTTTATTGCAACACAAGGTCCTCTACAACACACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337296" ref_strand="+" ref_description="SGN-E337296 [cTOE-7-D4]">
      <seq>tacaaagaaagcagtgaagtgaacatcctaccacggggtgcggactgtccattcggaatcggaggcagatatcagcgatggccaccgccggtaaactcgtgtcgtcgtcgtcgtcgtcacccaagcctttcgatttctccgacgattcagttcctaagagagtcgttctgtcgagtgatcagcagcgttattgcttggaagtactcaaagtcttcaaggacaagaggttttctgctcccgaaaaaatccgccaagagttcatgacgttgcaggcaactaggatgagagcttcagaaatgaaaagtagatgctcaatggctttgaacagcgcaaacattagcaaaaatcgatacactgatgttctgccatttgacaataacagggttgttttggacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90054" stop="86090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89754" g_stop="89483" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89482" i_stop="86606" i_length="2877">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.637" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86605" g_stop="86509" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="369" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86508" i_stop="86417" i_length="92">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86416" g_stop="86390" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="396" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E337296" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89754" e_stop="89483"/>
          <exon e_start="86605" e_stop="86509"/>
          <exon e_start="86416" e_stop="86390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAAGAAAGCAGTGAAGTGAACATCCTACCACGGGGTGCGGACTGTCCATTCGGAATCGGAGGCAGATATCAGCGATGGCCACCGCCGGTAAACTCGTGTCGTCGTCGTCGTCGTCACCCAAGCCTTTCGATTTCTCCGACGATTCAGTTCCTAAGAGAGTCGTTCTGTCGAGTGATCAGCAGCGTTATTGCTTGGAAGTACTCAAAGTCTTCAAGGACAAGAGGTTTTCTGCTCCCGAAAAAATCCGCCAAGAGTTCATGACGTTGCAGGTCCGTTTGCATTATACTCTCTTTCTTTCTCAATTTTATTGTTATTTAATGTTGTGCTTTTTCATAAAAGAGGAGGGTATTTATTCAATTGGTCAATTTTTTTGAAGAATATTTTCTCAAGTTACTCGAAGAATGATGAAAATAACTTCCAAAACAGGTTCTACAAGTGATGTGTACCTCTGTCTTTGAAGAAACAGAGGAGGGGGGCCAGTTTAGGAGTCTCATTTTTTTGATTCATTCATTCATAAGAGTGTATGATAAGAAAAAGTCCTCCAACACACCTCATCTTTACCTCCGTTATTTGTCTATATTATATACAAATGCTTTTAGTATAGTATATTTTGCTAAGTACTATACACGAGAAAATAAGTTACAAATCCACTTATTTCCTGGAAAACTATTTCCTTCATACAGAATACACCCGAAATGTTGAATTTGGGATATATGAGATGGATCCAAACAGAGTGAGATGGATATAAAGTATTCTTAGTCCATGTTCAACTAGTTAGGGAATATGGTGGAGTTGATTGACGTGTGATGATTATTTGATTTTTAGTTGGATATTCACAGTCATATTATCATATATCAATTAGAAAAACCAAGTCTTTCTATGCTAAGAATGAGTTGCTGTCGTCATTGGACTTTTCAACGTTTCTTCTTCACATAGGTGGTTCCATTCTTGGAAAATTGTGGTAGTTTGAATGCTTCAAACAGCAAATTCATTGGAACGTATTAAATGGTTCATATTAATCGATATGTATATAGAGGATTTATGCTATGGACTCCAGGTAATTTAGAATTAAGATTTAGTTGATAAATTGACTGATTGAAGTGTTGGTAAATTGTTTGAGTTCTAGTTGGATTTTTACTGTCATACTATTTTGAAAAGGGAAATCACTTACTCCTTGTAGGATGACTGTCAACCTTAACTAGGTGATAACATCATGAAGGCTTTAGGCATTTAATTCATTACGTCATATGAAATAGGCTGAAGTTAGTTGATCTTGAGCCGACTACTAGTAGTTAGGGATCGAGAAGTAGTTAACCGGTTGATTGATTGATTCAAAGTTTTGGGTGATATTGATGACGTCAATTTATTCGATTCAAACACAATACACATAACATTTTTCCAAAGTGGGAATATAACTAAGTTAAAGACTTAGCGCTTCTAATATTCTGACATATGCTATTTTGAAACATCTCCTACTGTGTTCAATCATAATTTTAAGCTCTCAGCATTAGCATGTGTTGTAGTATGTTTTACAGGATTCTACAATCTATACCATATCGCTAGCCTTTCCTCTCTGAATTTGTACATCTTTTCACTACAATTAGTGTCTCCTTGAGATATAGCATCTTTTTTTTTTTCGATTGGTAAAAGTAATTTGATTCAACAAAATGCTCTTTCTGGTATAGAATTTTTGCAGCATTCTTCCCCTCATTTCACTTATCCTATGCTAATATGATAATCCAAAACTTGTTGCTTCTCATTTAACATTCTTTATGTTTTCTTGTAGGTAATCATGCTTAGAAGATTAGAGTTAGAATTTGTTTCCACGTGAAAAAAGGACTAGTTCTTTTTCCTTTCAAAGAGTAATTATTTATTGATCCCGCTTAGGGATTACACTGGGTATGTTGTTGTATGTGAAAGCTCATACTAGGGTATAGGAGAAGTAAAGAAGTTCTGCAAAAATACAGTTCTCTATGAACAACATCTAGTTAGTATAACTCTGTACTACCAGAGGTTTTATGTTCTCTCTTAAATTTACTAGAAACAACATATTTGCCTTAATTTGCATGAGAATACCTTTTTATCGGTAATTTGTATAACAGTATTATTCTCCCCTCGGAAACTCCATTCCTTTCTCTCCTATTACCCACATTTGGACAGACCAGGTTACATTCCTGCTCTCTATCTCCGTTTCCTTCTTTCTTCTAAAGCTCCAACTGAACATGAGATCTTTCCTTGTATATGCTATTGCCTACTGAACGCCAAAGGGATTCAATACTACGCACTTTAATCAACTTTCTAATGGGCAATGCGTGAGCAAGTGATCCACATCTGCGCAGGATTGTTTACACATATAGCACCAGCTATTTTGTCCTAACTTCCGTTTGCTCAAGTTCTCTGCAGTAAGGATGACTACCCTTGCTGTTGCTGGAAAACATACCTTCATCAGAGCTCTAGGAATCCAGATTGAGATCTGTGGGAGAATTATGTGTTTTCTTTTTAGTAGTCTGTCGTAGGACTACTTAAGTCCAAAATTCCTCATGCTTGCCCATTCCATAACTAAGAATTCTGACCTGTTGGTGTGATGTTTTGCTTTTAAATAGGTTGTGGAACTCACCTATCTCCCACAGCTGTAATGATCAAGTTGCTTAGTTTTGTTGTTACATTTCAGAGAGTAATATTGTTACTTTTTTGAGATCCGGAATGTATTAGGAAGACCTTGCTCAAAGTATCAACTCCGAAAAGCAAAAATGGAGGCATATTGGGAGTTAGGTGGTCTTAACTCTTAAGTGTCTATATGAAGCAAAATAACACCTTTAGATAGTTTTAAGAAAATATTGAGAAGCTTCTTTGATGGTTGAGTTCATTTATGTAATGTTTCCCGCTCTCATTTAAATCTAGTTTCCAAAAAAAAAAATCAAAATCCAAGCATCTTTTTTATGATGTTTTGGGTAGATGCTGGTGGTGGTGACTCCACTTAAAATGAGCTAAATTTATGTGAAAGGACAGCTCTCTTATGTCTTGAGAAAGTTGTTGTTGCATGATGTTGTTTGTTTTGCTTCTTTGTTATTTACTTGTTGAGATCTTGGCTTTCTGTAAGTAGCATGATGTTATCCTGAATTCCAAGAACACCTCTTATGACTCAGGCAACTAGGATGAGAGCTTCAGAAATGAAAAGTAGATGCTCAATGGCTTTGAACAGCGCAAACATTAGCAAAAATCGATACACTGATGTTCTGCCATGTATGCAGATCAGTTTCTATCAATTCTTCGATTGATGTTGAAGTTGTGTATTATAACCTGTGAATAATTATATCAAGCTTCATTCTTCTCAGTTGACAATAACAGGGTTGTTTTGGACC</genome_strand>
        <mrna_strand>TACAAAGAAAGCAGTGAAGTGAACATCCTACCACGGGGTGCGGACTGTCCATTCGGAATCGGAGGCAGATATCAGCGATGGCCACCGCCGGTAAACTCGTGTCGTCGTCGTCGTCGTCACCCAAGCCTTTCGATTTCTCCGACGATTCAGTTCCTAAGAGAGTCGTTCTGTCGAGTGATCAGCAGCGTTATTGCTTGGAAGTACTCAAAGTCTTCAAGGACAAGAGGTTTTCTGCTCCCGAAAAAATCCGCCAAGAGTTCATGACGTTGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTAGGATGAGAGCTTCAGAAATGAAAAGTAGATGCTCAATGGCTTTGAACAGCGCAAACATTAGCAAAAATCGATACACTGATGTTCTGCCAT............................................................................................TTGACAATAACAGGGTTGTTTTGGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E541332" ref_strand="-" ref_description="SGN-E541332 [TUS-62-B4](-)">
      <seq>ttttttttttttttaaaaacacaatataatcgtgggttcgacagaagcaattctctgtttattgcattacaaaaatcattttgtgagtcacttatcccatggcactcactctatgtaagggaagagacagagaaaacgaagacgaggggaaggaactacacttctaaagaatcaagaatagcctgtagagttttctgtgatgatgcccactgtttgtcattggcactgaccacacagaggacaactgttatcttctccttggccgttgccttggctaggttgtgagatccagcaagagcgtatggagtttcaagaacatacttgtaatacgctagatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="+" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6205" stop="90930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89749" g_stop="89751" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89752" i_stop="90300" i_length="549">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.531" a_score="0.76"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90301" g_stop="90632" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="339" r_length="336" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="+" ref_id="SGN-E541332" ref_strand="-">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541332" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="89749" e_stop="89751"/>
          <exon e_start="90301" e_stop="90632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTACGCACTTTCAATTTACCGAAACTATTTATTAAAATATGATCTATTTTGATATTAAATAAACATTCAAAAAATTGTAATCTTACTTTTTTTATTGATAGACAGCAAGAAGGAGGATCTTTTTCATCGCTGAGTCATTGTTGACTTTATTATCACAACGATAGATTGAAATATCATGTTAATTTGAAATTATATTTTAAATTTCATATTTTCATTCGTAAGATTTATTTTTCACTTTTGTCTTCTTGTCTGGATAGATATATTTATATATATTTTCCAAATATTATATTTTTATATTTCGAATTATTTATTCACTTTTAATTTTTGAATTATTACTAACTATTTATTCGAGAAATCAAAAAATATTAAAAGACATAAAAATTCTCTATTTGTTCATTTTGAGAAATATTTATTTTTCAAAAAAGTTTAGCTTATGCGCAAATATAATAGACCTTTTCTAAATTCATGAGAACAAGACACAAGTAGTTTACAGTAGAGCTACTGCTACTCATTCGTGCATTTTTTGTATTGATATGATACAATTGAAAGGGGGATACAGTAAAAACAACAATATAATC-TGGGTTCGACAGAAGCAATTCT-TGTTTATTGCATTACAAAAATCATTTT-TGAGTCACTTATCCCATGGCACTCACTCTATGTAAGGGAAGAGACAGAGAAAATGAAGACGAGGGGAAGGAACTACACTTCGAAAGAATCAAGAATAGCCTGTAGAGTTTTCTGTGATGATGCCCACTGTTTGTCATTGGCACTGACCACACAGAGGACAACTG-TAT-TTC-CCTTGGCCGTTGCCTTGGCTAGGTTGTGAGATCCAGTAAGAGCGTATGGAGTTTCAAGAACATACTTGTAATACTGCAAACACA</genome_strand>
        <mrna_strand>TTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTTAAAAAC-ACAATATAATCGTGGGTTCGACAGAAGCAATTCTCTGTTTATTGCATTACAAAAATCATTTTGTGAGTCACTTATCCCATGGCACTCACTCTATGTAAGGGAAGAGACAGAGAAAACGAAGACGAGGGGAAGGAACTACACTTCTAAAGAATCAAGAATAGCCTGTAGAGTTTTCTGTGATGATGCCCACTGTTTGTCATTGGCACTGACCACACAGAGGACAACTGTTATCTTCTCCTTGGCCGTTGCCTTGGCTAGGTTGTGAGATCCAGCAAGAGCGTATGGAGTTTCAAGAACATACTTGTAATAC-GCTAGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548579" ref_strand="+" ref_description="SGN-E548579 [TUS-62-I3](-)">
      <seq>ctgatcctaattttgttctctttaaagcaactcctaaagacactcctgctcttcgtgccggaaatgtgcagccttacacatttattcttcctccaacctggaaacaactccgtatagctaatatactatctggaaactattgccaacccaaatgtgcagagccgtgggtggaggtgaagtttgaaaatgaaaaacagggtaaggttcaagtggtggcttctcctttgatccgtctcactaacaaacctaatgcaactattgaagacattgggacccctgagaaagtcattgcttctcttggcccttttgtcacaggaaacactctcgatccagatgaactccttgagacttctatagagaaacgtggtgatctaacgtattacaagtatgttcttgaaactccatacgctcttactggatctcacaacctagccaaggcaacggccaagggaaatacagttgtcctctgtgtggtcagtgccaatgacaaacagtgggcatcatcacagaaaactctacaggctattcttgattctttcgaagtgtagttccttcccctcgtcttcattttctctgtctcttcccttacatagagtgagtgccatgggataagtgactcaaaaatgatttttgtaatgcaataaacaagaattgcttctgtcgaaccccagattatattgttgttttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="92916" stop="6205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92616" g_stop="92557" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92556" i_stop="91368" i_length="1189">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91367" g_stop="91051" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="377" r_length="317" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91050" i_stop="90622" i_length="429">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90621" g_stop="90309" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="691" r_length="314" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90308" i_stop="89896" i_length="413">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.466" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89895" g_stop="89886" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="701" r_length="10" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E548579" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92616" e_stop="92557"/>
          <exon e_start="91367" e_stop="91051"/>
          <exon e_start="90621" e_stop="90309"/>
          <exon e_start="89895" e_stop="89886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATCCTAATTTTGTTCTCTTTAAAGCAACTCCTAAAGACACTCCTGCTCTTCGTGCCGGTATAATGTCGACCACTCTTCATTCTTATTGTTAAACTGCTTTATTCATTTGATTTTTGAGTAATTGTGTAGTTTTAGTTTGTACCCATTTCATTTTGAATTTGAGCAAGATTTTTCCACTGCAGAGTTGGGAAAAGAGTCATAGTTTCTGTAGTTTGCTAGAAGCTTCTGCAAAGCAATATCCTGATAAACAAAGCTCATTAACCTGAAAGAATATTGATTGTATTAGAATAACAAGCTTAGTGGATCCAGAAAATTGGATAGAAGACAAGTCTCTAATTCTTTACCTCTTAGGCAGTGAAAAATCCAGTATTTTGGCTTAGGGGGGTTCGGAAAGTGAATTTGGAAGCTCAAGGTAAATTTTGAATCCCTAAACCACTGGGCGAACCTCTTGTCTTGTGTTTAGGAGATACAAAATTTATATATAATTGTCAAGAGGGTTCTGATGAACACCTCATCCCCTAGATCCACCTCTGCTCTTAGGTGCCTAGGTACTGGAATTTGTTTATTTTAAATCCCAAGCCTAAAATGAGTTAGTACTTGTATTCTCATTACTTTAGGAGTTTATCATCTCAAAACCAAGTTCCAAGCTCCTTTGAGAAAATAGAAAGAAATCTACTTGGTTTATGAATCAGATCGAAAATAGGCAAGCAACCGAAAATGTCTGTGTGGAACTTGTGTAGAACTTAAGATATGACAACAGCTTGACAGGTTTGAGCCTTATTATAATGCATTGCTGGTTCAGAGTCCATGTAACCTTGCTTTTGTTGCTGCAATTTTATGTTTGAGTAAAATATTTGCCATTTAATGTTTCTGTAGTTAATAAATGGTGTTGGCATTAATGTTGGATCAATTCGTAAGTATCTCTTTTGTGTTACGGATCACATCCTTGCTGAGCGATGAGCTATTTCAGATATGAGAGTGCAGTCAGAGTGTTCTCTTAATTGGCAATACATTTTATATCTGCCTGTGGCCTATTATGGTTGTTTGTCCAATCAAGTAATGCCAATTTCTTAGTTATAACATAATTTCTAGTAGTACTTTTTCTTCTTTCTTCTTCTTTTTAGTGTAGTTCATATCTTCTTGATATGCTTGTGAAGGTTACCATTTACATAAATTGGTGTTTCCGTTTTCAACATTTGCTTCTCCTGTAGATTGCTTATGATGCTTTATATTTAGTTTCTTGCAGGAAATGTGCAGCCTTACACATTTATTCTTCCTCCAACCTGGAAACAACTCCGTATAGCTAATATACTATCTGGAAACTATTGCCAACCCAAATGTGCAGAGCCGTGGGTGGAGGTGAAGTTTGAAAATGAAAAACAGGGTAAGGTTCAAGTGGTGGCTTCTCCTTTGATCCGTCTCACTAACAAACCTAATGCAACTATTGAAGACATTGGGACCCCTGAGAAAGTCATTGCTTCTCTTGGCCCTTTTGTCACAGGAAACACTCTCGATCCAGATGAACTCCTTGAGACTTCTATAGAGAAACGTGGTGATCTAACGGTGAGAGTCTTCTCATTTTCTCATCCATTTATCATATTGAAAAAATAATATTTTCCCCCTTATCTTCATCCCTTATTTTCCAACACATAAGAGGACTGGCATGGCTGGTAATCTTGTCTATGATGGTTTACTCGAAAGCTAATGGAGTCATGACTAAATTGCTTAGACAGTACTTAATATCTCAGCGGGATAAATGGCACGAAGAAAGTATCCATGGATTTTATCTGGCCCCATCAATATGTAACAGCCTGATTTAGCAAATGATAGGTGCATCATAGTTATGTTTTTCCTGGAAAAGAATTAATCTGCTTCTAAGAAACTGGTTTCACTGTTGGTGCTCCAATGTATGCATTTGGTCTTCCTGTTATATGCAACTGTTGCTCTTTAAATCTCCTGATGAAGAGAATGCTTCTATCTTTGTGTTTGCAGTATTACAAGTATGTTCTTGAAACTCCATACGCTCTTACTGGATCTCACAACCTAGCCAAGGCAACGGCCAAGGGAAATACAGTTGTCCTCTGTGTGGTCAGTGCCAATGACAAACAGTGGGCATCATCACAGAAAACTCTACAGGCTATTCTTGATTCTTTCGAAGTGTAGTTCCTTCCCCTCGTCTTCATTTTCTCTGTCTCTTCCCTTACATAGAGTGAGTGCCATGGGATAAGTGACTCAAAAATGATTTTTGTAATGCAATAAACAAGAATTGCTTCTGTCGAA-CCCAGATTATATTGTTGTTTTTACTGTATCCCCCTTTCAATTGTATCATATCAATACAAAAAATGCACGAATGAGTAGCAGTAGCTCTACTGTAAACTACTTGTGTCTTGTTCTCATGAATTTAGAAAAGGTCTATTATATTTGCGCATAAGCTAAACTTTTTTGAAAAATAAATATTTCTCAAAATGAACAAATAGAGAATTTTTATGTCTTTTAATATTTTTTGATTTCTCGAATAAATAGTTAGTAATAATTCAAAAATTAAAAGTGAATAAATAATTCGAAATATAAAAATATAATATTTGGAAAATATATATAAATATATCTATCCAGACAAGAAGACAAAAGTGAAAAATAAATCTTACGAATGAAAATATGAAATTTAAAATATAATTTCAAATTAACATGATATTTCAATCTATCGTTGTGATAATAAAGTCAACAATGA</genome_strand>
        <mrna_strand>CTGATCCTAATTTTGTTCTCTTTAAAGCAACTCCTAAAGACACTCCTGCTCTTCGTGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGTGCAGCCTTACACATTTATTCTTCCTCCAACCTGGAAACAACTCCGTATAGCTAATATACTATCTGGAAACTATTGCCAACCCAAATGTGCAGAGCCGTGGGTGGAGGTGAAGTTTGAAAATGAAAAACAGGGTAAGGTTCAAGTGGTGGCTTCTCCTTTGATCCGTCTCACTAACAAACCTAATGCAACTATTGAAGACATTGGGACCCCTGAGAAAGTCATTGCTTCTCTTGGCCCTTTTGTCACAGGAAACACTCTCGATCCAGATGAACTCCTTGAGACTTCTATAGAGAAACGTGGTGATCTAACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................TATTACAAGTATGTTCTTGAAACTCCATACGCTCTTACTGGATCTCACAACCTAGCCAAGGCAACGGCCAAGGGAAATACAGTTGTCCTCTGTGTGGTCAGTGCCAATGACAAACAGTGGGCATCATCACAGAAAACTCTACAGGCTATTCTTGATTCTTTCGAAGTGTAGTTCCTTCCCCTCGTCTTCATTTTCTCTGTCTCTTCCCTTACATAGAGTGAGTGCCATGGGATAAGTGACTCAAAAATGATTTTTGTAATGCAATAAACAAGAATTGCTTCTGTCGAACCCCAGATTATATTGTTGTTTTAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733913" ref_strand="+" ref_description="SGN-E733913 [LB11BB06]">
      <seq>attttgttctctttaaagcaactcctaaagacactcctgctcttcgtgccggaaatgtgcagccttacacatttattcttcctccaacctggaaacaactccgtatagctaatatactatctggaaactattgccaacccaaatgtgcagagccgtgggtggaggtgaagtttgaaaatgaaaaacagggtaaggttcaagtggtggcttctcctttgatccgtctcactaacaaacctaatgcaactattgaagacattgggacccctgagaaagtcattgcttctcttggcccttttgtcacaggaaacactctcgatccagatgaactccttgagacttctatagagaaacgtggtgatctaacgtattacaagtatgttcttgaaactccatacgctcttactggatctcacaacctagccaaggcaacggccaagggaaatacagttgtcctctgtgtggtcagtgccaatgacaaacagtgggcatcatcacagaaaactctacaggctattcttgattctttcgaagtgtagttccttcccctcgtcttcattttctctgtctcttcccttacatagagtgagtgccatgggataagtgactcaaaaatgatttttgtaatgcaataaacaagaattgcttctgtcgaacccagattatattgttgtttttactgtatccccctttcaattgtatcatatcaatacaaaaaatgcacgaatgagtagcagtagctctactgtaaactacttgtgtcttgttctcatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="92907" stop="89914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92607" g_stop="92557" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92556" i_stop="91368" i_length="1189">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91367" g_stop="91051" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="368" r_length="317" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91050" i_stop="90622" i_length="429">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90621" g_stop="90205" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="785" r_length="417" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E733913" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92607" e_stop="92557"/>
          <exon e_start="91367" e_stop="91051"/>
          <exon e_start="90621" e_stop="90205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGTTCTCTTTAAAGCAACTCCTAAAGACACTCCTGCTCTTCGTGCCGGTATAATGTCGACCACTCTTCATTCTTATTGTTAAACTGCTTTATTCATTTGATTTTTGAGTAATTGTGTAGTTTTAGTTTGTACCCATTTCATTTTGAATTTGAGCAAGATTTTTCCACTGCAGAGTTGGGAAAAGAGTCATAGTTTCTGTAGTTTGCTAGAAGCTTCTGCAAAGCAATATCCTGATAAACAAAGCTCATTAACCTGAAAGAATATTGATTGTATTAGAATAACAAGCTTAGTGGATCCAGAAAATTGGATAGAAGACAAGTCTCTAATTCTTTACCTCTTAGGCAGTGAAAAATCCAGTATTTTGGCTTAGGGGGGTTCGGAAAGTGAATTTGGAAGCTCAAGGTAAATTTTGAATCCCTAAACCACTGGGCGAACCTCTTGTCTTGTGTTTAGGAGATACAAAATTTATATATAATTGTCAAGAGGGTTCTGATGAACACCTCATCCCCTAGATCCACCTCTGCTCTTAGGTGCCTAGGTACTGGAATTTGTTTATTTTAAATCCCAAGCCTAAAATGAGTTAGTACTTGTATTCTCATTACTTTAGGAGTTTATCATCTCAAAACCAAGTTCCAAGCTCCTTTGAGAAAATAGAAAGAAATCTACTTGGTTTATGAATCAGATCGAAAATAGGCAAGCAACCGAAAATGTCTGTGTGGAACTTGTGTAGAACTTAAGATATGACAACAGCTTGACAGGTTTGAGCCTTATTATAATGCATTGCTGGTTCAGAGTCCATGTAACCTTGCTTTTGTTGCTGCAATTTTATGTTTGAGTAAAATATTTGCCATTTAATGTTTCTGTAGTTAATAAATGGTGTTGGCATTAATGTTGGATCAATTCGTAAGTATCTCTTTTGTGTTACGGATCACATCCTTGCTGAGCGATGAGCTATTTCAGATATGAGAGTGCAGTCAGAGTGTTCTCTTAATTGGCAATACATTTTATATCTGCCTGTGGCCTATTATGGTTGTTTGTCCAATCAAGTAATGCCAATTTCTTAGTTATAACATAATTTCTAGTAGTACTTTTTCTTCTTTCTTCTTCTTTTTAGTGTAGTTCATATCTTCTTGATATGCTTGTGAAGGTTACCATTTACATAAATTGGTGTTTCCGTTTTCAACATTTGCTTCTCCTGTAGATTGCTTATGATGCTTTATATTTAGTTTCTTGCAGGAAATGTGCAGCCTTACACATTTATTCTTCCTCCAACCTGGAAACAACTCCGTATAGCTAATATACTATCTGGAAACTATTGCCAACCCAAATGTGCAGAGCCGTGGGTGGAGGTGAAGTTTGAAAATGAAAAACAGGGTAAGGTTCAAGTGGTGGCTTCTCCTTTGATCCGTCTCACTAACAAACCTAATGCAACTATTGAAGACATTGGGACCCCTGAGAAAGTCATTGCTTCTCTTGGCCCTTTTGTCACAGGAAACACTCTCGATCCAGATGAACTCCTTGAGACTTCTATAGAGAAACGTGGTGATCTAACGGTGAGAGTCTTCTCATTTTCTCATCCATTTATCATATTGAAAAAATAATATTTTCCCCCTTATCTTCATCCCTTATTTTCCAACACATAAGAGGACTGGCATGGCTGGTAATCTTGTCTATGATGGTTTACTCGAAAGCTAATGGAGTCATGACTAAATTGCTTAGACAGTACTTAATATCTCAGCGGGATAAATGGCACGAAGAAAGTATCCATGGATTTTATCTGGCCCCATCAATATGTAACAGCCTGATTTAGCAAATGATAGGTGCATCATAGTTATGTTTTTCCTGGAAAAGAATTAATCTGCTTCTAAGAAACTGGTTTCACTGTTGGTGCTCCAATGTATGCATTTGGTCTTCCTGTTATATGCAACTGTTGCTCTTTAAATCTCCTGATGAAGAGAATGCTTCTATCTTTGTGTTTGCAGTATTACAAGTATGTTCTTGAAACTCCATACGCTCTTACTGGATCTCACAACCTAGCCAAGGCAACGGCCAAGGGAAATACAGTTGTCCTCTGTGTGGTCAGTGCCAATGACAAACAGTGGGCATCATCACAGAAAACTCTACAGGCTATTCTTGATTCTTTCGAAGTGTAGTTCCTTCCCCTCGTCTTCATTTTCTCTGTCTCTTCCCTTACATAGAGTGAGTGCCATGGGATAAGTGACTCAAAAATGATTTTTGTAATGCAATAAACAAGAATTGCTTCTGTCGAACCCAGATTATATTGTTGTTTTTACTGTATCCCCCTTTCAATTGTATCATATCAATACAAAAAATGCACGAATGAGTAGCAGTAGCTCTACTGTAAACTACTTGTGTCTTGTTCTCATGAATTTAGAAAA</genome_strand>
        <mrna_strand>ATTTTGTTCTCTTTAAAGCAACTCCTAAAGACACTCCTGCTCTTCGTGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGTGCAGCCTTACACATTTATTCTTCCTCCAACCTGGAAACAACTCCGTATAGCTAATATACTATCTGGAAACTATTGCCAACCCAAATGTGCAGAGCCGTGGGTGGAGGTGAAGTTTGAAAATGAAAAACAGGGTAAGGTTCAAGTGGTGGCTTCTCCTTTGATCCGTCTCACTAACAAACCTAATGCAACTATTGAAGACATTGGGACCCCTGAGAAAGTCATTGCTTCTCTTGGCCCTTTTGTCACAGGAAACACTCTCGATCCAGATGAACTCCTTGAGACTTCTATAGAGAAACGTGGTGATCTAACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................TATTACAAGTATGTTCTTGAAACTCCATACGCTCTTACTGGATCTCACAACCTAGCCAAGGCAACGGCCAAGGGAAATACAGTTGTCCTCTGTGTGGTCAGTGCCAATGACAAACAGTGGGCATCATCACAGAAAACTCTACAGGCTATTCTTGATTCTTTCGAAGTGTAGTTCCTTCCCCTCGTCTTCATTTTCTCTGTCTCTTCCCTTACATAGAGTGAGTGCCATGGGATAAGTGACTCAAAAATGATTTTTGTAATGCAATAAACAAGAATTGCTTCTGTCGAACCCAGATTATATTGTTGTTTTTACTGTATCCCCCTTTCAATTGTATCATATCAATACAAAAAATGCACGAATGAGTAGCAGTAGCTCTACTGTAAACTACTTGTGTCTTGTTCTCATGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E541621" ref_strand="+" ref_description="SGN-E541621 [TUS-62-I3]">
      <seq>caacaccagagaagaaaaagaacaaaaaaacagaaatggcgctgaagccattgtcttccatatttccaaattcaacaaatccatcattaacatctgcaaaaccccatcatcaaaacatggggctatcgagaagagatttcatcaatgttggtctttctgtaatgccactgctcgtatctcctcctccgctttccattgctcgagaagttgaagttggttctttcttgcctccatcacctactgatcctaattttgttctctttaaagcaactcctaaagacactcctgctcttcgtgccggaaatgtgcagccttacacatttattcttcctccaacctggaaacaactccgtatagctaatatactatctggaaactattgccaacccaaatgtgcagagccgtgggtggaggtgaagtttgaaaatgaaaaacagggtaaggttcaagtggtggcttctcctttgatccgtctcactaacaaacctaatgcaactattgaagacattgggacccctgagaaagtcattgcttctcttggcccttttgtcacaggaaacactctcgatccagatgaactccttgagacttctatagagaaacgtggtgatctaacgtattacaagtatgttcttgaaactccatacgctcttactggatctcacaacctagccaaggcaacggccaagggaaatacagttgtcctctgtgtggtcagtgccaatgacaaacagtgggcatcatcacagaaaactctacaggctattcttgattctttcgaagtgtagttccttcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93156" stop="90141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92856" g_stop="92557" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92556" i_stop="91368" i_length="1189">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91367" g_stop="91051" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="617" r_length="317" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91050" i_stop="90622" i_length="429">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90621" g_stop="90441" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="798" r_length="181" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E541621" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92856" e_stop="92557"/>
          <exon e_start="91367" e_stop="91051"/>
          <exon e_start="90621" e_stop="90441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACACCAGAGAAGAAAAAGAACAAAAAAACAGAAATGGCGCTGAAGCCATTGTCTTCCATATTTCCAAATTCAACAAATCCATCATTAACATCTGCAAAACCCCATCATCAAAACATGGGGCTATCGAGAAGAGATTTCATCAATGTTGGTCTTTCTGTAATGCCACTGCTCGTATCTCCTCCTCCGCTTTCCATTGCTCGAGAAGTTGAAGTTGGTTCTTTCTTGCCTCCATCACCTACTGATCCTAATTTTGTTCTCTTTAAAGCAACTCCTAAAGACACTCCTGCTCTTCGTGCCGGTATAATGTCGACCACTCTTCATTCTTATTGTTAAACTGCTTTATTCATTTGATTTTTGAGTAATTGTGTAGTTTTAGTTTGTACCCATTTCATTTTGAATTTGAGCAAGATTTTTCCACTGCAGAGTTGGGAAAAGAGTCATAGTTTCTGTAGTTTGCTAGAAGCTTCTGCAAAGCAATATCCTGATAAACAAAGCTCATTAACCTGAAAGAATATTGATTGTATTAGAATAACAAGCTTAGTGGATCCAGAAAATTGGATAGAAGACAAGTCTCTAATTCTTTACCTCTTAGGCAGTGAAAAATCCAGTATTTTGGCTTAGGGGGGTTCGGAAAGTGAATTTGGAAGCTCAAGGTAAATTTTGAATCCCTAAACCACTGGGCGAACCTCTTGTCTTGTGTTTAGGAGATACAAAATTTATATATAATTGTCAAGAGGGTTCTGATGAACACCTCATCCCCTAGATCCACCTCTGCTCTTAGGTGCCTAGGTACTGGAATTTGTTTATTTTAAATCCCAAGCCTAAAATGAGTTAGTACTTGTATTCTCATTACTTTAGGAGTTTATCATCTCAAAACCAAGTTCCAAGCTCCTTTGAGAAAATAGAAAGAAATCTACTTGGTTTATGAATCAGATCGAAAATAGGCAAGCAACCGAAAATGTCTGTGTGGAACTTGTGTAGAACTTAAGATATGACAACAGCTTGACAGGTTTGAGCCTTATTATAATGCATTGCTGGTTCAGAGTCCATGTAACCTTGCTTTTGTTGCTGCAATTTTATGTTTGAGTAAAATATTTGCCATTTAATGTTTCTGTAGTTAATAAATGGTGTTGGCATTAATGTTGGATCAATTCGTAAGTATCTCTTTTGTGTTACGGATCACATCCTTGCTGAGCGATGAGCTATTTCAGATATGAGAGTGCAGTCAGAGTGTTCTCTTAATTGGCAATACATTTTATATCTGCCTGTGGCCTATTATGGTTGTTTGTCCAATCAAGTAATGCCAATTTCTTAGTTATAACATAATTTCTAGTAGTACTTTTTCTTCTTTCTTCTTCTTTTTAGTGTAGTTCATATCTTCTTGATATGCTTGTGAAGGTTACCATTTACATAAATTGGTGTTTCCGTTTTCAACATTTGCTTCTCCTGTAGATTGCTTATGATGCTTTATATTTAGTTTCTTGCAGGAAATGTGCAGCCTTACACATTTATTCTTCCTCCAACCTGGAAACAACTCCGTATAGCTAATATACTATCTGGAAACTATTGCCAACCCAAATGTGCAGAGCCGTGGGTGGAGGTGAAGTTTGAAAATGAAAAACAGGGTAAGGTTCAAGTGGTGGCTTCTCCTTTGATCCGTCTCACTAACAAACCTAATGCAACTATTGAAGACATTGGGACCCCTGAGAAAGTCATTGCTTCTCTTGGCCCTTTTGTCACAGGAAACACTCTCGATCCAGATGAACTCCTTGAGACTTCTATAGAGAAACGTGGTGATCTAACGGTGAGAGTCTTCTCATTTTCTCATCCATTTATCATATTGAAAAAATAATATTTTCCCCCTTATCTTCATCCCTTATTTTCCAACACATAAGAGGACTGGCATGGCTGGTAATCTTGTCTATGATGGTTTACTCGAAAGCTAATGGAGTCATGACTAAATTGCTTAGACAGTACTTAATATCTCAGCGGGATAAATGGCACGAAGAAAGTATCCATGGATTTTATCTGGCCCCATCAATATGTAACAGCCTGATTTAGCAAATGATAGGTGCATCATAGTTATGTTTTTCCTGGAAAAGAATTAATCTGCTTCTAAGAAACTGGTTTCACTGTTGGTGCTCCAATGTATGCATTTGGTCTTCCTGTTATATGCAACTGTTGCTCTTTAAATCTCCTGATGAAGAGAATGCTTCTATCTTTGTGTTTGCAGTATTACAAGTATGTTCTTGAAACTCCATACGCTCTTACTGGATCTCACAACCTAGCCAAGGCAACGGCCAAGGGAAATACAGTTGTCCTCTGTGTGGTCAGTGCCAATGACAAACAGTGGGCATCATCACAGAAAACTCTACAGGCTATTCTTGATTCTTTCGAAGTGTAGTTCCTTCCCC</genome_strand>
        <mrna_strand>CAACACCAGAGAAGAAAAAGAACAAAAAAACAGAAATGGCGCTGAAGCCATTGTCTTCCATATTTCCAAATTCAACAAATCCATCATTAACATCTGCAAAACCCCATCATCAAAACATGGGGCTATCGAGAAGAGATTTCATCAATGTTGGTCTTTCTGTAATGCCACTGCTCGTATCTCCTCCTCCGCTTTCCATTGCTCGAGAAGTTGAAGTTGGTTCTTTCTTGCCTCCATCACCTACTGATCCTAATTTTGTTCTCTTTAAAGCAACTCCTAAAGACACTCCTGCTCTTCGTGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGTGCAGCCTTACACATTTATTCTTCCTCCAACCTGGAAACAACTCCGTATAGCTAATATACTATCTGGAAACTATTGCCAACCCAAATGTGCAGAGCCGTGGGTGGAGGTGAAGTTTGAAAATGAAAAACAGGGTAAGGTTCAAGTGGTGGCTTCTCCTTTGATCCGTCTCACTAACAAACCTAATGCAACTATTGAAGACATTGGGACCCCTGAGAAAGTCATTGCTTCTCTTGGCCCTTTTGTCACAGGAAACACTCTCGATCCAGATGAACTCCTTGAGACTTCTATAGAGAAACGTGGTGATCTAACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................TATTACAAGTATGTTCTTGAAACTCCATACGCTCTTACTGGATCTCACAACCTAGCCAAGGCAACGGCCAAGGGAAATACAGTTGTCCTCTGTGTGGTCAGTGCCAATGACAAACAGTGGGCATCATCACAGAAAACTCTACAGGCTATTCTTGATTCTTTCGAAGTGTAGTTCCTTCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E541334" ref_strand="+" ref_description="SGN-E541334 [TUS-62-B4]">
      <seq>cgacacccgagaagaaaaagaacaaaaaaacagaaatggcgctgaagccattgtcttccatatttccaaattcaacaaatccatcattaacatctgcgaaaccccatcatcaaaacatggggctatcgagaagagatgtcatcaatgttggtctttctgtaatgccactgctcgtatctcctcctccgctttccattgctcgagaagttgaagttggttctttcttgcctccatcacctactgatcctaattttgttctctttaaagcaactcctaaagacactcctgctcttcgtgccagaaatgtgcagccttacacatttattcttcctccaacctgaaaacaactccgtatagctaatatactatctggaaactattgccaacccaaatgtgcagagccgtgggtggaggtgaagtttgaaaatgaaaaacacggtaaggttcaagtggtggcttctcctttgatccatctcactaacaaacctaatgcaactattgaagacattgggacccctgagaaagtcattgcttctcttgccccttttgtcacaggaaacactctctatccagatgaactccttgagacttctatagagaaacgtggtgatccaacgtattacaagtatgttgcttgaaactccgtacgctcttactggatctcacaacctagccaatgcaacggccaagggaaatacagttgtcctctgtgtggtcagtgccaatgacaaacagtgagcatcatcacagaaaactctacaggctattcttgattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93156" stop="90162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92856" g_stop="92557" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92556" i_stop="91368" i_length="1189">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91367" g_stop="91051" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="617" r_length="317" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91050" i_stop="90622" i_length="429">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90621" g_stop="90462" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="778" r_length="161" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E541334" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92856" e_stop="92557"/>
          <exon e_start="91367" e_stop="91051"/>
          <exon e_start="90621" e_stop="90462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACACCAGAGAAGAAAAAGAACAAAAAAACAGAAATGGCGCTGAAGCCATTGTCTTCCATATTTCCAAATTCAACAAATCCATCATTAACATCTGCAAAACCCCATCATCAAAACATGGGGCTATCGAGAAGAGATTTCATCAATGTTGGTCTTTCTGTAATGCCACTGCTCGTATCTCCTCCTCCGCTTTCCATTGCTCGAGAAGTTGAAGTTGGTTCTTTCTTGCCTCCATCACCTACTGATCCTAATTTTGTTCTCTTTAAAGCAACTCCTAAAGACACTCCTGCTCTTCGTGCCGGTATAATGTCGACCACTCTTCATTCTTATTGTTAAACTGCTTTATTCATTTGATTTTTGAGTAATTGTGTAGTTTTAGTTTGTACCCATTTCATTTTGAATTTGAGCAAGATTTTTCCACTGCAGAGTTGGGAAAAGAGTCATAGTTTCTGTAGTTTGCTAGAAGCTTCTGCAAAGCAATATCCTGATAAACAAAGCTCATTAACCTGAAAGAATATTGATTGTATTAGAATAACAAGCTTAGTGGATCCAGAAAATTGGATAGAAGACAAGTCTCTAATTCTTTACCTCTTAGGCAGTGAAAAATCCAGTATTTTGGCTTAGGGGGGTTCGGAAAGTGAATTTGGAAGCTCAAGGTAAATTTTGAATCCCTAAACCACTGGGCGAACCTCTTGTCTTGTGTTTAGGAGATACAAAATTTATATATAATTGTCAAGAGGGTTCTGATGAACACCTCATCCCCTAGATCCACCTCTGCTCTTAGGTGCCTAGGTACTGGAATTTGTTTATTTTAAATCCCAAGCCTAAAATGAGTTAGTACTTGTATTCTCATTACTTTAGGAGTTTATCATCTCAAAACCAAGTTCCAAGCTCCTTTGAGAAAATAGAAAGAAATCTACTTGGTTTATGAATCAGATCGAAAATAGGCAAGCAACCGAAAATGTCTGTGTGGAACTTGTGTAGAACTTAAGATATGACAACAGCTTGACAGGTTTGAGCCTTATTATAATGCATTGCTGGTTCAGAGTCCATGTAACCTTGCTTTTGTTGCTGCAATTTTATGTTTGAGTAAAATATTTGCCATTTAATGTTTCTGTAGTTAATAAATGGTGTTGGCATTAATGTTGGATCAATTCGTAAGTATCTCTTTTGTGTTACGGATCACATCCTTGCTGAGCGATGAGCTATTTCAGATATGAGAGTGCAGTCAGAGTGTTCTCTTAATTGGCAATACATTTTATATCTGCCTGTGGCCTATTATGGTTGTTTGTCCAATCAAGTAATGCCAATTTCTTAGTTATAACATAATTTCTAGTAGTACTTTTTCTTCTTTCTTCTTCTTTTTAGTGTAGTTCATATCTTCTTGATATGCTTGTGAAGGTTACCATTTACATAAATTGGTGTTTCCGTTTTCAACATTTGCTTCTCCTGTAGATTGCTTATGATGCTTTATATTTAGTTTCTTGCAGGAAATGTGCAGCCTTACACATTTATTCTTCCTCCAACCTGGAAACAACTCCGTATAGCTAATATACTATCTGGAAACTATTGCCAACCCAAATGTGCAGAGCCGTGGGTGGAGGTGAAGTTTGAAAATGAAAAACAGGGTAAGGTTCAAGTGGTGGCTTCTCCTTTGATCCGTCTCACTAACAAACCTAATGCAACTATTGAAGACATTGGGACCCCTGAGAAAGTCATTGCTTCTCTTGGCCCTTTTGTCACAGGAAACACTCTCGATCCAGATGAACTCCTTGAGACTTCTATAGAGAAACGTGGTGATCTAACGGTGAGAGTCTTCTCATTTTCTCATCCATTTATCATATTGAAAAAATAATATTTTCCCCCTTATCTTCATCCCTTATTTTCCAACACATAAGAGGACTGGCATGGCTGGTAATCTTGTCTATGATGGTTTACTCGAAAGCTAATGGAGTCATGACTAAATTGCTTAGACAGTACTTAATATCTCAGCGGGATAAATGGCACGAAGAAAGTATCCATGGATTTTATCTGGCCCCATCAATATGTAACAGCCTGATTTAGCAAATGATAGGTGCATCATAGTTATGTTTTTCCTGGAAAAGAATTAATCTGCTTCTAAGAAACTGGTTTCACTGTTGGTGCTCCAATGTATGCATTTGGTCTTCCTGTTATATGCAACTGTTGCTCTTTAAATCTCCTGATGAAGAGAATGCTTCTATCTTTGTGTTTGCAGTATTACAAGTATGTT-CTTGAAACTCCATACGCTCTTACTGGATCTCACAACCTAGCCAAGGCAACGGCCAAGGGAAATACAGTTGTCCTCTGTGTGGTCAGTGCCAATGACAAACAGTGGGCATCATCACAGAAAACTCTACAGGCTATTCTTGATTCTT</genome_strand>
        <mrna_strand>CGACACCCGAGAAGAAAAAGAACAAAAAAACAGAAATGGCGCTGAAGCCATTGTCTTCCATATTTCCAAATTCAACAAATCCATCATTAACATCTGCGAAACCCCATCATCAAAACATGGGGCTATCGAGAAGAGATGTCATCAATGTTGGTCTTTCTGTAATGCCACTGCTCGTATCTCCTCCTCCGCTTTCCATTGCTCGAGAAGTTGAAGTTGGTTCTTTCTTGCCTCCATCACCTACTGATCCTAATTTTGTTCTCTTTAAAGCAACTCCTAAAGACACTCCTGCTCTTCGTGCCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGTGCAGCCTTACACATTTATTCTTCCTCCAACCTGAAAACAACTCCGTATAGCTAATATACTATCTGGAAACTATTGCCAACCCAAATGTGCAGAGCCGTGGGTGGAGGTGAAGTTTGAAAATGAAAAACACGGTAAGGTTCAAGTGGTGGCTTCTCCTTTGATCCATCTCACTAACAAACCTAATGCAACTATTGAAGACATTGGGACCCCTGAGAAAGTCATTGCTTCTCTTGCCCCTTTTGTCACAGGAAACACTCTCTATCCAGATGAACTCCTTGAGACTTCTATAGAGAAACGTGGTGATCCAACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................TATTACAAGTATGTTGCTTGAAACTCCGTACGCTCTTACTGGATCTCACAACCTAGCCAATGCAACGGCCAAGGGAAATACAGTTGTCCTCTGTGTGGTCAGTGCCAATGACAAACAGTGAGCATCATCACAGAAAACTCTACAGGCTATTCTTGATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462280" ref_strand="+" ref_description="SGN-E462280 [cPRO-11-O5]">
      <seq>ttttgttctctttaaagccactcctaaagacactcctgctcttcgtgccgtttcttgcaggaaatgtgcagccttacacatttattcttcctccaacctggaaacaactccgtatagctaatatactatctggaaattattgccaacccaagtgtgcagagccgtgggtggaggtgaagtttgaagatgaaaaacagggtaaagttcaagtggtggcttctcctttgatccgtctcactaacaaacctaatgcaactattgaagacattgngacccctgagaaagtcattgcttctcttggcccttttgtcacaggaaacactctcgatccagatgaactccttgagacttctatagagaaacgtggtgatctaacgtattacaagtacgtttcttgaactccatatgctcttactggatcgcacaacctagcaaaaggcacgggctaagggaaatacagttgtcctctgtgtggtcagtgccnnatgacaacagtgggcatcatcgcagaaaactctacaggctattcttgattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="92906" stop="90164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92606" g_stop="92557" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92556" i_stop="91378" i_length="1179">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.379" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91377" g_stop="91051" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="377" r_length="327" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91050" i_stop="90622" i_length="429">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90621" g_stop="90464" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="536" r_length="159" r_score="0.892"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E462280" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E462280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92606" e_stop="92557"/>
          <exon e_start="91377" e_stop="91051"/>
          <exon e_start="90621" e_stop="90464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTTCTCTTTAAAGCAACTCCTAAAGACACTCCTGCTCTTCGTGCCGGTATAATGTCGACCACTCTTCATTCTTATTGTTAAACTGCTTTATTCATTTGATTTTTGAGTAATTGTGTAGTTTTAGTTTGTACCCATTTCATTTTGAATTTGAGCAAGATTTTTCCACTGCAGAGTTGGGAAAAGAGTCATAGTTTCTGTAGTTTGCTAGAAGCTTCTGCAAAGCAATATCCTGATAAACAAAGCTCATTAACCTGAAAGAATATTGATTGTATTAGAATAACAAGCTTAGTGGATCCAGAAAATTGGATAGAAGACAAGTCTCTAATTCTTTACCTCTTAGGCAGTGAAAAATCCAGTATTTTGGCTTAGGGGGGTTCGGAAAGTGAATTTGGAAGCTCAAGGTAAATTTTGAATCCCTAAACCACTGGGCGAACCTCTTGTCTTGTGTTTAGGAGATACAAAATTTATATATAATTGTCAAGAGGGTTCTGATGAACACCTCATCCCCTAGATCCACCTCTGCTCTTAGGTGCCTAGGTACTGGAATTTGTTTATTTTAAATCCCAAGCCTAAAATGAGTTAGTACTTGTATTCTCATTACTTTAGGAGTTTATCATCTCAAAACCAAGTTCCAAGCTCCTTTGAGAAAATAGAAAGAAATCTACTTGGTTTATGAATCAGATCGAAAATAGGCAAGCAACCGAAAATGTCTGTGTGGAACTTGTGTAGAACTTAAGATATGACAACAGCTTGACAGGTTTGAGCCTTATTATAATGCATTGCTGGTTCAGAGTCCATGTAACCTTGCTTTTGTTGCTGCAATTTTATGTTTGAGTAAAATATTTGCCATTTAATGTTTCTGTAGTTAATAAATGGTGTTGGCATTAATGTTGGATCAATTCGTAAGTATCTCTTTTGTGTTACGGATCACATCCTTGCTGAGCGATGAGCTATTTCAGATATGAGAGTGCAGTCAGAGTGTTCTCTTAATTGGCAATACATTTTATATCTGCCTGTGGCCTATTATGGTTGTTTGTCCAATCAAGTAATGCCAATTTCTTAGTTATAACATAATTTCTAGTAGTACTTTTTCTTCTTTCTTCTTCTTTTTAGTGTAGTTCATATCTTCTTGATATGCTTGTGAAGGTTACCATTTACATAAATTGGTGTTTCCGTTTTCAACATTTGCTTCTCCTGTAGATTGCTTATGATGCTTTATATTTAGTTTCTTGCAGGAAATGTGCAGCCTTACACATTTATTCTTCCTCCAACCTGGAAACAACTCCGTATAGCTAATATACTATCTGGAAACTATTGCCAACCCAAATGTGCAGAGCCGTGGGTGGAGGTGAAGTTTGAAAATGAAAAACAGGGTAAGGTTCAAGTGGTGGCTTCTCCTTTGATCCGTCTCACTAACAAACCTAATGCAACTATTGAAGACATTGGGACCCCTGAGAAAGTCATTGCTTCTCTTGGCCCTTTTGTCACAGGAAACACTCTCGATCCAGATGAACTCCTTGAGACTTCTATAGAGAAACGTGGTGATCTAACGGTGAGAGTCTTCTCATTTTCTCATCCATTTATCATATTGAAAAAATAATATTTTCCCCCTTATCTTCATCCCTTATTTTCCAACACATAAGAGGACTGGCATGGCTGGTAATCTTGTCTATGATGGTTTACTCGAAAGCTAATGGAGTCATGACTAAATTGCTTAGACAGTACTTAATATCTCAGCGGGATAAATGGCACGAAGAAAGTATCCATGGATTTTATCTGGCCCCATCAATATGTAACAGCCTGATTTAGCAAATGATAGGTGCATCATAGTTATGTTTTTCCTGGAAAAGAATTAATCTGCTTCTAAGAAACTGGTTTCACTGTTGGTGCTCCAATGTATGCATTTGGTCTTCCTGTTATATGCAACTGTTGCTCTTTAAATCTCCTGATGAAGAGAATGCTTCTATCTTTGTGTTTGCAGTATTACAAGTATG-TTCTTGAAACTCCATACGCTCTTACTGGATCTCACAACCTAGC-CAAGGCAACGGCCAAGGGAAATACAGTTGTCCTCTGTGTGGTCAGTGCC-AATGACAAACAGTGGGCATCATCACAGAAAACTCTACAGGCTATTCTTGATTC</genome_strand>
        <mrna_strand>TTTTGTTCTCTTTAAAGCCACTCCTAAAGACACTCCTGCTCTTCGTGCCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTTGCAGGAAATGTGCAGCCTTACACATTTATTCTTCCTCCAACCTGGAAACAACTCCGTATAGCTAATATACTATCTGGAAATTATTGCCAACCCAAGTGTGCAGAGCCGTGGGTGGAGGTGAAGTTTGAAGATGAAAAACAGGGTAAAGTTCAAGTGGTGGCTTCTCCTTTGATCCGTCTCACTAACAAACCTAATGCAACTATTGAAGACATTGNGACCCCTGAGAAAGTCATTGCTTCTCTTGGCCCTTTTGTCACAGGAAACACTCTCGATCCAGATGAACTCCTTGAGACTTCTATAGAGAAACGTGGTGATCTAACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................TATTACAAGTACGTTTCTTG-AACTCCATATGCTCTTACTGGATCGCACAACCTAGCAAAAGGCACGGGCTAAGGGAAATACAGTTGTCCTCTGTGTGGTCAGTGCCNNATGAC-AACAGTGGGCATCATCGCAGAAAACTCTACAGGCTATTCTTGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E464124" ref_strand="+" ref_description="SGN-E464124 [cPRO-17-E9]">
      <seq>ttttgttctctttaaagccactcctaaagacactcctgctcttcgtgccgtttcttgcaggaaatgtgcagccttacacatttattcttcctccaacctggaaacaactccgtatagctaatatactatctggaaattattgccaacccaagtgtgcagagccgtgggtggaggtgaagtttgaagatgaaaaacagggtaaagttcaagtggtggcttctcctttgatccgtctcactaacaaacctaatgcaactattgaagacattgggacccctgagaaagtcattgcttctcttggcccttttgtcacaggaaacactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="92906" stop="90803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92606" g_stop="92557" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92556" i_stop="91378" i_length="1179">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.379" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91377" g_stop="91103" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="325" r_length="275" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E464124" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E464124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92606" e_stop="92557"/>
          <exon e_start="91377" e_stop="91103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTTCTCTTTAAAGCAACTCCTAAAGACACTCCTGCTCTTCGTGCCGGTATAATGTCGACCACTCTTCATTCTTATTGTTAAACTGCTTTATTCATTTGATTTTTGAGTAATTGTGTAGTTTTAGTTTGTACCCATTTCATTTTGAATTTGAGCAAGATTTTTCCACTGCAGAGTTGGGAAAAGAGTCATAGTTTCTGTAGTTTGCTAGAAGCTTCTGCAAAGCAATATCCTGATAAACAAAGCTCATTAACCTGAAAGAATATTGATTGTATTAGAATAACAAGCTTAGTGGATCCAGAAAATTGGATAGAAGACAAGTCTCTAATTCTTTACCTCTTAGGCAGTGAAAAATCCAGTATTTTGGCTTAGGGGGGTTCGGAAAGTGAATTTGGAAGCTCAAGGTAAATTTTGAATCCCTAAACCACTGGGCGAACCTCTTGTCTTGTGTTTAGGAGATACAAAATTTATATATAATTGTCAAGAGGGTTCTGATGAACACCTCATCCCCTAGATCCACCTCTGCTCTTAGGTGCCTAGGTACTGGAATTTGTTTATTTTAAATCCCAAGCCTAAAATGAGTTAGTACTTGTATTCTCATTACTTTAGGAGTTTATCATCTCAAAACCAAGTTCCAAGCTCCTTTGAGAAAATAGAAAGAAATCTACTTGGTTTATGAATCAGATCGAAAATAGGCAAGCAACCGAAAATGTCTGTGTGGAACTTGTGTAGAACTTAAGATATGACAACAGCTTGACAGGTTTGAGCCTTATTATAATGCATTGCTGGTTCAGAGTCCATGTAACCTTGCTTTTGTTGCTGCAATTTTATGTTTGAGTAAAATATTTGCCATTTAATGTTTCTGTAGTTAATAAATGGTGTTGGCATTAATGTTGGATCAATTCGTAAGTATCTCTTTTGTGTTACGGATCACATCCTTGCTGAGCGATGAGCTATTTCAGATATGAGAGTGCAGTCAGAGTGTTCTCTTAATTGGCAATACATTTTATATCTGCCTGTGGCCTATTATGGTTGTTTGTCCAATCAAGTAATGCCAATTTCTTAGTTATAACATAATTTCTAGTAGTACTTTTTCTTCTTTCTTCTTCTTTTTAGTGTAGTTCATATCTTCTTGATATGCTTGTGAAGGTTACCATTTACATAAATTGGTGTTTCCGTTTTCAACATTTGCTTCTCCTGTAGATTGCTTATGATGCTTTATATTTAGTTTCTTGCAGGAAATGTGCAGCCTTACACATTTATTCTTCCTCCAACCTGGAAACAACTCCGTATAGCTAATATACTATCTGGAAACTATTGCCAACCCAAATGTGCAGAGCCGTGGGTGGAGGTGAAGTTTGAAAATGAAAAACAGGGTAAGGTTCAAGTGGTGGCTTCTCCTTTGATCCGTCTCACTAACAAACCTAATGCAACTATTGAAGACATTGGGACCCCTGAGAAAGTCATTGCTTCTCTTGGCCCTTTTGTCACAGGAAACACTCT</genome_strand>
        <mrna_strand>TTTTGTTCTCTTTAAAGCCACTCCTAAAGACACTCCTGCTCTTCGTGCCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTTGCAGGAAATGTGCAGCCTTACACATTTATTCTTCCTCCAACCTGGAAACAACTCCGTATAGCTAATATACTATCTGGAAATTATTGCCAACCCAAGTGTGCAGAGCCGTGGGTGGAGGTGAAGTTTGAAGATGAAAAACAGGGTAAAGTTCAAGTGGTGGCTTCTCCTTTGATCCGTCTCACTAACAAACCTAATGCAACTATTGAAGACATTGGGACCCCTGAGAAAGTCATTGCTTCTCTTGGCCCTTTTGTCACAGGAAACACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298952" ref_strand="+" ref_description="SGN-E298952 [cLET-42-E20]">
      <seq>aacaccagagaagaaaaagaacaaaaaaacataaatggcgctgaagccattgtcttccatatttccaaattcaacaaatccatcattaacatctgcaaaaccccatcatcaaaacatggggctatcgagaagagatttcatcaatgttggtctttctgtaatgccactgctcgtatctcctcctccgctttccattgctcgagaagttgaagttggttctttcttgcctccatcacctactgatcctaattttgttctctttaaagcaactcctaaagacactcctgctcttcgtgccggaaatgtgcagccttacacatttattcttcctccaacctggaaacaactccgtatagctaatatactatctggaaactattgccaacccaaatgtgcagagccgcgggtggaggtgaagtttgaaaatgaaaaacagggtaaggttcaagtggcggcttctcctttgatccgtctcactaacaaacctaatgcaactattgaagacattgggacccctgagaaagtcattgcttctcttggcccttttgtcacaggaaacactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93155" stop="90804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92855" g_stop="92557" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92556" i_stop="91368" i_length="1189">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91367" g_stop="91104" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="563" r_length="264" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E298952" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92855" e_stop="92557"/>
          <exon e_start="91367" e_stop="91104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACCAGAGAAGAAAAAGAACAAAAAAACAGAAATGGCGCTGAAGCCATTGTCTTCCATATTTCCAAATTCAACAAATCCATCATTAACATCTGCAAAACCCCATCATCAAAACATGGGGCTATCGAGAAGAGATTTCATCAATGTTGGTCTTTCTGTAATGCCACTGCTCGTATCTCCTCCTCCGCTTTCCATTGCTCGAGAAGTTGAAGTTGGTTCTTTCTTGCCTCCATCACCTACTGATCCTAATTTTGTTCTCTTTAAAGCAACTCCTAAAGACACTCCTGCTCTTCGTGCCGGTATAATGTCGACCACTCTTCATTCTTATTGTTAAACTGCTTTATTCATTTGATTTTTGAGTAATTGTGTAGTTTTAGTTTGTACCCATTTCATTTTGAATTTGAGCAAGATTTTTCCACTGCAGAGTTGGGAAAAGAGTCATAGTTTCTGTAGTTTGCTAGAAGCTTCTGCAAAGCAATATCCTGATAAACAAAGCTCATTAACCTGAAAGAATATTGATTGTATTAGAATAACAAGCTTAGTGGATCCAGAAAATTGGATAGAAGACAAGTCTCTAATTCTTTACCTCTTAGGCAGTGAAAAATCCAGTATTTTGGCTTAGGGGGGTTCGGAAAGTGAATTTGGAAGCTCAAGGTAAATTTTGAATCCCTAAACCACTGGGCGAACCTCTTGTCTTGTGTTTAGGAGATACAAAATTTATATATAATTGTCAAGAGGGTTCTGATGAACACCTCATCCCCTAGATCCACCTCTGCTCTTAGGTGCCTAGGTACTGGAATTTGTTTATTTTAAATCCCAAGCCTAAAATGAGTTAGTACTTGTATTCTCATTACTTTAGGAGTTTATCATCTCAAAACCAAGTTCCAAGCTCCTTTGAGAAAATAGAAAGAAATCTACTTGGTTTATGAATCAGATCGAAAATAGGCAAGCAACCGAAAATGTCTGTGTGGAACTTGTGTAGAACTTAAGATATGACAACAGCTTGACAGGTTTGAGCCTTATTATAATGCATTGCTGGTTCAGAGTCCATGTAACCTTGCTTTTGTTGCTGCAATTTTATGTTTGAGTAAAATATTTGCCATTTAATGTTTCTGTAGTTAATAAATGGTGTTGGCATTAATGTTGGATCAATTCGTAAGTATCTCTTTTGTGTTACGGATCACATCCTTGCTGAGCGATGAGCTATTTCAGATATGAGAGTGCAGTCAGAGTGTTCTCTTAATTGGCAATACATTTTATATCTGCCTGTGGCCTATTATGGTTGTTTGTCCAATCAAGTAATGCCAATTTCTTAGTTATAACATAATTTCTAGTAGTACTTTTTCTTCTTTCTTCTTCTTTTTAGTGTAGTTCATATCTTCTTGATATGCTTGTGAAGGTTACCATTTACATAAATTGGTGTTTCCGTTTTCAACATTTGCTTCTCCTGTAGATTGCTTATGATGCTTTATATTTAGTTTCTTGCAGGAAATGTGCAGCCTTACACATTTATTCTTCCTCCAACCTGGAAACAACTCCGTATAGCTAATATACTATCTGGAAACTATTGCCAACCCAAATGTGCAGAGCCGTGGGTGGAGGTGAAGTTTGAAAATGAAAAACAGGGTAAGGTTCAAGTGGTGGCTTCTCCTTTGATCCGTCTCACTAACAAACCTAATGCAACTATTGAAGACATTGGGACCCCTGAGAAAGTCATTGCTTCTCTTGGCCCTTTTGTCACAGGAAACACTC</genome_strand>
        <mrna_strand>AACACCAGAGAAGAAAAAGAACAAAAAAACATAAATGGCGCTGAAGCCATTGTCTTCCATATTTCCAAATTCAACAAATCCATCATTAACATCTGCAAAACCCCATCATCAAAACATGGGGCTATCGAGAAGAGATTTCATCAATGTTGGTCTTTCTGTAATGCCACTGCTCGTATCTCCTCCTCCGCTTTCCATTGCTCGAGAAGTTGAAGTTGGTTCTTTCTTGCCTCCATCACCTACTGATCCTAATTTTGTTCTCTTTAAAGCAACTCCTAAAGACACTCCTGCTCTTCGTGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGTGCAGCCTTACACATTTATTCTTCCTCCAACCTGGAAACAACTCCGTATAGCTAATATACTATCTGGAAACTATTGCCAACCCAAATGTGCAGAGCCGCGGGTGGAGGTGAAGTTTGAAAATGAAAAACAGGGTAAGGTTCAAGTGGCGGCTTCTCCTTTGATCCGTCTCACTAACAAACCTAATGCAACTATTGAAGACATTGGGACCCCTGAGAAAGTCATTGCTTCTCTTGGCCCTTTTGTCACAGGAAACACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475829" ref_strand="+" ref_description="SGN-E475829 [cSTB-41-N8]">
      <seq>cagaaatggcgctgaagccattgtcttccatattcccaaattcaacaaatccaggattaacatctgcaaaaccccatcatcaaaacatagggctgtcaagaagagatttcatcaatgttggtctttctgtaatgccactgctcatatcccctactccgtcttccattgctcgagaagttgaagttggttctttcttgcctccatctcctactgatcctaattttgttctctttaaagccactccgaaagacactcctgctcttcgtgccggaaatgtgcagccttacacatttattcttcctccaacctggaaacaacttcgtatagctaatatattatctggaaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93126" stop="90989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92826" g_stop="92557" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92556" i_stop="91368" i_length="1189">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91367" g_stop="91289" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="349" r_length="79" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E475829" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E475829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92826" e_stop="92557"/>
          <exon e_start="91367" e_stop="91289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAATGGCGCTGAAGCCATTGTCTTCCATATTTCCAAATTCAACAAATCCATCATTAACATCTGCAAAACCCCATCATCAAAACATGGGGCTATCGAGAAGAGATTTCATCAATGTTGGTCTTTCTGTAATGCCACTGCTCGTATCTCCTCCTCCGCTTTCCATTGCTCGAGAAGTTGAAGTTGGTTCTTTCTTGCCTCCATCACCTACTGATCCTAATTTTGTTCTCTTTAAAGCAACTCCTAAAGACACTCCTGCTCTTCGTGCCGGTATAATGTCGACCACTCTTCATTCTTATTGTTAAACTGCTTTATTCATTTGATTTTTGAGTAATTGTGTAGTTTTAGTTTGTACCCATTTCATTTTGAATTTGAGCAAGATTTTTCCACTGCAGAGTTGGGAAAAGAGTCATAGTTTCTGTAGTTTGCTAGAAGCTTCTGCAAAGCAATATCCTGATAAACAAAGCTCATTAACCTGAAAGAATATTGATTGTATTAGAATAACAAGCTTAGTGGATCCAGAAAATTGGATAGAAGACAAGTCTCTAATTCTTTACCTCTTAGGCAGTGAAAAATCCAGTATTTTGGCTTAGGGGGGTTCGGAAAGTGAATTTGGAAGCTCAAGGTAAATTTTGAATCCCTAAACCACTGGGCGAACCTCTTGTCTTGTGTTTAGGAGATACAAAATTTATATATAATTGTCAAGAGGGTTCTGATGAACACCTCATCCCCTAGATCCACCTCTGCTCTTAGGTGCCTAGGTACTGGAATTTGTTTATTTTAAATCCCAAGCCTAAAATGAGTTAGTACTTGTATTCTCATTACTTTAGGAGTTTATCATCTCAAAACCAAGTTCCAAGCTCCTTTGAGAAAATAGAAAGAAATCTACTTGGTTTATGAATCAGATCGAAAATAGGCAAGCAACCGAAAATGTCTGTGTGGAACTTGTGTAGAACTTAAGATATGACAACAGCTTGACAGGTTTGAGCCTTATTATAATGCATTGCTGGTTCAGAGTCCATGTAACCTTGCTTTTGTTGCTGCAATTTTATGTTTGAGTAAAATATTTGCCATTTAATGTTTCTGTAGTTAATAAATGGTGTTGGCATTAATGTTGGATCAATTCGTAAGTATCTCTTTTGTGTTACGGATCACATCCTTGCTGAGCGATGAGCTATTTCAGATATGAGAGTGCAGTCAGAGTGTTCTCTTAATTGGCAATACATTTTATATCTGCCTGTGGCCTATTATGGTTGTTTGTCCAATCAAGTAATGCCAATTTCTTAGTTATAACATAATTTCTAGTAGTACTTTTTCTTCTTTCTTCTTCTTTTTAGTGTAGTTCATATCTTCTTGATATGCTTGTGAAGGTTACCATTTACATAAATTGGTGTTTCCGTTTTCAACATTTGCTTCTCCTGTAGATTGCTTATGATGCTTTATATTTAGTTTCTTGCAGGAAATGTGCAGCCTTACACATTTATTCTTCCTCCAACCTGGAAACAACTCCGTATAGCTAATATACTATCTGGAAACTA</genome_strand>
        <mrna_strand>CAGAAATGGCGCTGAAGCCATTGTCTTCCATATTCCCAAATTCAACAAATCCAGGATTAACATCTGCAAAACCCCATCATCAAAACATAGGGCTGTCAAGAAGAGATTTCATCAATGTTGGTCTTTCTGTAATGCCACTGCTCATATCCCCTACTCCGTCTTCCATTGCTCGAGAAGTTGAAGTTGGTTCTTTCTTGCCTCCATCTCCTACTGATCCTAATTTTGTTCTCTTTAAAGCCACTCCGAAAGACACTCCTGCTCTTCGTGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGTGCAGCCTTACACATTTATTCTTCCTCCAACCTGGAAACAACTTCGTATAGCTAATATATTATCTGGAAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395047" ref_strand="-" ref_description="SGN-E395047 [TUS-35-D13]">
      <seq>ggtgctcctagttttagtatcttaatagtcagataaattcatctaattttgcgaatagtcaattttcttattagactttgtattactttagtttggtggtttcctgccaaaagcacaatctggagattgataggcagaggcagatcagatgtggaggtcgaaaggagcaaatgccaactgcaccccactctcttgaagaagagaagctgtatccatagaagagtgttgattgcctaatgcgagaagagatctcaacaacataatggaacagcatcatcattagtgaaatacttgcgagagcagcttacttgcagttgtggagaacaagaaatatgccccagtgatgagaatccaccaaaaaatctaacttgcttattacccaccagtgaaatttggcaagcaagagtaactcataaaaatgaatcatcctagatttacttcacagatcatacagctctgaaaaagtagctaactgtaacttatttgaacacacgacaacaaaagtttagttcatatcttaaatcatgagaaactttctataaaaaaaaaaaaaaaaaactcgaactagttctctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="96570" stop="62206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96270" g_stop="96071" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96070" i_stop="93876" i_length="2195">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93875" g_stop="93532" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="544" r_length="344" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93531" i_stop="93152" i_length="380">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.857" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93151" g_stop="93120" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="576" r_length="32" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E395047" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395047" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="96270" e_stop="96071"/>
          <exon e_start="93875" e_stop="93532"/>
          <exon e_start="93151" e_stop="93120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGCTCCTAGTTTTAGTATCTTAATAGTCAGATAAACTCATCTAATTTTGCGAATAGTCAATTTTCTTATTAGACTTTGTATTACTTTAGTTTGGTGGTTTCCTGCCAAAAGCACAATCTGGAGATTGATAGGCAGAGGCAGATCAGATGTGGAGGTCGAAAGGAGCAAATGCCAACTGCACCCCACTCTCTTGAAGAAGTATGTTTTCTGTTAATATATACCAATTCTAATAGATATCTTATCAATATACAATGTTGGAGCTGAAAGCAGTCCAAATCCCTATTACATATACACTGTGTTCGCCCCTATTGACATATATCCTTGTTTTGTACATGCATTCCTTATTGTTCTCTAGAACTTTATCCTTTTTTTCTTCAATATGCATGGCTAACAATGACAAGGGGAAGTATTGAAAATAAATGCATAAAGTTTTCATGGCTAGCAATATCCAGAGGATATCGAAAGGGAGGGAGATCCATCTTCTACATTTAGCCAACTTTAGGAAAACCAGTATGCATATGATATGTTATTATTGAAAGTAGTTTGCATACTCCCTCTTCGAATAAGACAAAAGCAATAGAGACAGGTCTCATGTAGCTGCAATAAATTTTTTTTTATGTGCACATGACATATTTCAACTTATGACATCTTCATCAGCCAAAACTAGGATCATCAGGATATGTAAGACTTTAGCTTTGACTAGTTAGGTCTGAATCTCACTAGTCAAAACTAATTTCAAGGGGTTAACATACTAACAAATGCTGAAGATTATATATGAACTTGCAATATAAAATGTGATTTTGCGGAGTTACATCCAAGTCCTAGATAGATTCGTAGTTTATGTTGTGACACGGGTACTTAACATAGTAGCAACAAAAATCCACTTTCAGTAAGTTAGGATTCGAAAAAAAGGAGTCAGGATTCTTGACAAAAATTTCAGGGTTCTTGGAAAATATTACATTTTCAAAAAGCCACTTTTGATCAAGGGTTCTTTCTTGTTGAGATGCTTACATATGCTTGAGGGTCTTTTTTAGTGACTATGAATGGAACCATTCATGGTAGCTATAACTGAATATTCCTGGTTTGATAATGTCGCAGTTGATCAAATCAGTGTCTTCTAAAAATCAATAAGCAATAATCATTAAGCAGCATGTTCGGAGGAGCCCTTTTTATGCTTTCTTTCAGTCAAGTTTTGGTCCCTTTAGAACTCTATTCTTTACATTGAGTCCTCTTTAGCTTCTGCTTCTTCAATAAGAAAGATCAGTATCTGATCTTCATGCTATGATCAATGAAGACCCAAAAATAGACTGTATGATCTTCAATGTCAGATCTTCACACCATTATCAATTTGTTTCTCACTCTACTTTTCAGGTTATCATATCATGCTTGATATGAGTTACACTTTGTTACAAGTAAGTTTAACCTGATAGTCTCAGAACATAAAACTCAAATTTTTTCTCCCCATCTTTTACAAGTACGTGGTGACTCTGTTTCTTACTGAAACATGGAGGATGTATGCAGACTAAGTTAGACATGCTCATTAATTTCCATTGAGGAAACTTCAAGATCTTCTAGGCTGAAGAATAATTTAAACAAATAAATACTCTAATGGAACTTCTTAAAATAGCTATAAAGGCATACTGATTTGCATTATCCAAGTCCATTTCAGCAGGATCACAGGTGTGAGAAGTTAAGATAGGATGTTGCCAATTTTCGAAAAAGAAGTTAAGATGGGGTTAAATAGATAGCAAAGAGCAGAGATGCTGATTGATTATAGTAGAGAGGGGCAATGTTGATTTTAGAGATATTTGTAATAACCTGGTTCACAGTAGCTACCAGGTTACAAGTCACTTCCTTGCTTTTGGTGGTGGTCTCTTTTGCAATGGCTTAGTCCAGACAAGGCAATAACCCATCTAAAGCTGTATGAGCAGTGGGGTTTTGACTCCATTGCTACACAAGTGTATGTAGTCTTGCTGAAATGCACAGATAATTAAGAACAATAGAGATGTTTCACATACTGGATATGATAAAAACATAGATCAGAAGTAAGAATATTAGAGGTACCTTGATAGTAAGTCTATATTGGGTTATGTTGTTGGAAGTAAGAATATACAACAACATACCTAGTGTAATTCCACAGGTCAGGTCTCTCGACCATAGTCCTTATCCCTAGCTCATGGGGGGTAGAGATGTTATTTCCGATAGACCCTCGTCTTAAATAACTTGAAAGTAAGACTATGAATGTCATATTTGTTGTGATACCCCAAAATTACTTTGAGAAACAAGTTGTGCATGACCTTTTCCCTTATTTATGGTTTAGTTTGTAGAATATTTAACTTCTTTTGTATCCAACATCATGTTAAAAGTTCTAACTCCGTTTTATCCTGCTTTAGGAGAAGCTGTATCCATAGAAGAGTGTTGATTGCCTAATGCGAGAAGAGATCTCAACAACATAATGGAACAGCATCATCATTAGTGAAATACTTGCGAGAGCAGCTTACTTGCAGTTGTGGAGAACAAGAAATATGCCCCAGTGATGAGAATCCACCAAAAAATCTAACTTGCTTATTACCCACCAGTGAAATTTGGCAAGCAAGAGTAACTCATAAAAATGAATCATCCTAGATTTACTTCACAGATCATACAGCTCTGAAAAAGTAGCTAACTGTAACTTATTTGAACACACGACAACAAAAGTTTAGTTCATATCTTAAATCATGAGAAACTTTCTATAACATTCCCTCCGGTCTATTTTCCTTGTCGCCCTTATTAAGAATAGATGATTCAAAATACTCCGTCTCATAAGTGTCACTAAGTGACAAAATAAAATTGCCTCCAAATGTCACCTTAGAAATTCAAAGTAAAGATTAGTATGCATTTTCAACTAGAGAATTACTTCCTCCATTAAAAAATATTACTTGTTACGATTTCTTTTTTGAGAATCAAACTATATGAATATTGACTAATATTTTAGTCAGAATAAAAAAATACAATTTTGTAGTGTTTTTTATATGATTTTTGAATATTTTAATTTTTAATTTCAAAAAATCAAATTAATTTAATCTAATTTTAATTTGTGAATCGTAAAATAAAATATTATTCACATTGTTCTCAAAGCACAAAAGGAAGGGTGGGCAATAGGTATCACG</genome_strand>
        <mrna_strand>GGTGCTCCTAGTTTTAGTATCTTAATAGTCAGATAAATTCATCTAATTTTGCGAATAGTCAATTTTCTTATTAGACTTTGTATTACTTTAGTTTGGTGGTTTCCTGCCAAAAGCACAATCTGGAGATTGATAGGCAGAGGCAGATCAGATGTGGAGGTCGAAAGGAGCAAATGCCAACTGCACCCCACTCTCTTGAAGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGCTGTATCCATAGAAGAGTGTTGATTGCCTAATGCGAGAAGAGATCTCAACAACATAATGGAACAGCATCATCATTAGTGAAATACTTGCGAGAGCAGCTTACTTGCAGTTGTGGAGAACAAGAAATATGCCCCAGTGATGAGAATCCACCAAAAAATCTAACTTGCTTATTACCCACCAGTGAAATTTGGCAAGCAAGAGTAACTCATAAAAATGAATCATCCTAGATTTACTTCACAGATCATACAGCTCTGAAAAAGTAGCTAACTGTAACTTATTTGAACACACGACAACAAAAGTTTAGTTCATATCTTAAATCATGAGAAACTTTCTATAAAA............................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAACTCGAACTAGTTCTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392595" ref_strand="-" ref_description="SGN-E392595 [TUS-35-D5]">
      <seq>cagataaactcatttaattttgggaatagtcaattttcttattagactttgtattactttagtttggtggtttcctgccaaaagcacaatctggagattgataggcagaggcagatcagatgtggaggtcgaaaggagcaaatgccaactgcaccccactctcttgaagaagagaagctgtatccatagaagagtgttgattgcctaatgcgagaagagatctcaacaacataatggaacagcatcatcattagtgaaatacttgcgagagcagcttacttgcagttgtggagaacaagaaatatgccccagtgatgagaatccaccaaaaaatctaacttgcttattacccaccagtgaaatttggcaagcaagagtaactcataaaaatgaatcatcctagatttacttcacagatcatacagctctgaaaaagtagctaactgtaacttatttgaacacacgacaacaaaagtttagttcatatcttaaatcatgagaaactttctataaaaaaaaaaaaaaaaaactcgaactagttctctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="96541" stop="62206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96241" g_stop="96071" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96070" i_stop="93876" i_length="2195">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93875" g_stop="93532" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="515" r_length="344" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93531" i_stop="93152" i_length="380">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.857" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93151" g_stop="93120" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="547" r_length="32" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E392595" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392595" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="96241" e_stop="96071"/>
          <exon e_start="93875" e_stop="93532"/>
          <exon e_start="93151" e_stop="93120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATAAACTCATCTAATTTTGCGAATAGTCAATTTTCTTATTAGACTTTGTATTACTTTAGTTTGGTGGTTTCCTGCCAAAAGCACAATCTGGAGATTGATAGGCAGAGGCAGATCAGATGTGGAGGTCGAAAGGAGCAAATGCCAACTGCACCCCACTCTCTTGAAGAAGTATGTTTTCTGTTAATATATACCAATTCTAATAGATATCTTATCAATATACAATGTTGGAGCTGAAAGCAGTCCAAATCCCTATTACATATACACTGTGTTCGCCCCTATTGACATATATCCTTGTTTTGTACATGCATTCCTTATTGTTCTCTAGAACTTTATCCTTTTTTTCTTCAATATGCATGGCTAACAATGACAAGGGGAAGTATTGAAAATAAATGCATAAAGTTTTCATGGCTAGCAATATCCAGAGGATATCGAAAGGGAGGGAGATCCATCTTCTACATTTAGCCAACTTTAGGAAAACCAGTATGCATATGATATGTTATTATTGAAAGTAGTTTGCATACTCCCTCTTCGAATAAGACAAAAGCAATAGAGACAGGTCTCATGTAGCTGCAATAAATTTTTTTTTATGTGCACATGACATATTTCAACTTATGACATCTTCATCAGCCAAAACTAGGATCATCAGGATATGTAAGACTTTAGCTTTGACTAGTTAGGTCTGAATCTCACTAGTCAAAACTAATTTCAAGGGGTTAACATACTAACAAATGCTGAAGATTATATATGAACTTGCAATATAAAATGTGATTTTGCGGAGTTACATCCAAGTCCTAGATAGATTCGTAGTTTATGTTGTGACACGGGTACTTAACATAGTAGCAACAAAAATCCACTTTCAGTAAGTTAGGATTCGAAAAAAAGGAGTCAGGATTCTTGACAAAAATTTCAGGGTTCTTGGAAAATATTACATTTTCAAAAAGCCACTTTTGATCAAGGGTTCTTTCTTGTTGAGATGCTTACATATGCTTGAGGGTCTTTTTTAGTGACTATGAATGGAACCATTCATGGTAGCTATAACTGAATATTCCTGGTTTGATAATGTCGCAGTTGATCAAATCAGTGTCTTCTAAAAATCAATAAGCAATAATCATTAAGCAGCATGTTCGGAGGAGCCCTTTTTATGCTTTCTTTCAGTCAAGTTTTGGTCCCTTTAGAACTCTATTCTTTACATTGAGTCCTCTTTAGCTTCTGCTTCTTCAATAAGAAAGATCAGTATCTGATCTTCATGCTATGATCAATGAAGACCCAAAAATAGACTGTATGATCTTCAATGTCAGATCTTCACACCATTATCAATTTGTTTCTCACTCTACTTTTCAGGTTATCATATCATGCTTGATATGAGTTACACTTTGTTACAAGTAAGTTTAACCTGATAGTCTCAGAACATAAAACTCAAATTTTTTCTCCCCATCTTTTACAAGTACGTGGTGACTCTGTTTCTTACTGAAACATGGAGGATGTATGCAGACTAAGTTAGACATGCTCATTAATTTCCATTGAGGAAACTTCAAGATCTTCTAGGCTGAAGAATAATTTAAACAAATAAATACTCTAATGGAACTTCTTAAAATAGCTATAAAGGCATACTGATTTGCATTATCCAAGTCCATTTCAGCAGGATCACAGGTGTGAGAAGTTAAGATAGGATGTTGCCAATTTTCGAAAAAGAAGTTAAGATGGGGTTAAATAGATAGCAAAGAGCAGAGATGCTGATTGATTATAGTAGAGAGGGGCAATGTTGATTTTAGAGATATTTGTAATAACCTGGTTCACAGTAGCTACCAGGTTACAAGTCACTTCCTTGCTTTTGGTGGTGGTCTCTTTTGCAATGGCTTAGTCCAGACAAGGCAATAACCCATCTAAAGCTGTATGAGCAGTGGGGTTTTGACTCCATTGCTACACAAGTGTATGTAGTCTTGCTGAAATGCACAGATAATTAAGAACAATAGAGATGTTTCACATACTGGATATGATAAAAACATAGATCAGAAGTAAGAATATTAGAGGTACCTTGATAGTAAGTCTATATTGGGTTATGTTGTTGGAAGTAAGAATATACAACAACATACCTAGTGTAATTCCACAGGTCAGGTCTCTCGACCATAGTCCTTATCCCTAGCTCATGGGGGGTAGAGATGTTATTTCCGATAGACCCTCGTCTTAAATAACTTGAAAGTAAGACTATGAATGTCATATTTGTTGTGATACCCCAAAATTACTTTGAGAAACAAGTTGTGCATGACCTTTTCCCTTATTTATGGTTTAGTTTGTAGAATATTTAACTTCTTTTGTATCCAACATCATGTTAAAAGTTCTAACTCCGTTTTATCCTGCTTTAGGAGAAGCTGTATCCATAGAAGAGTGTTGATTGCCTAATGCGAGAAGAGATCTCAACAACATAATGGAACAGCATCATCATTAGTGAAATACTTGCGAGAGCAGCTTACTTGCAGTTGTGGAGAACAAGAAATATGCCCCAGTGATGAGAATCCACCAAAAAATCTAACTTGCTTATTACCCACCAGTGAAATTTGGCAAGCAAGAGTAACTCATAAAAATGAATCATCCTAGATTTACTTCACAGATCATACAGCTCTGAAAAAGTAGCTAACTGTAACTTATTTGAACACACGACAACAAAAGTTTAGTTCATATCTTAAATCATGAGAAACTTTCTATAACATTCCCTCCGGTCTATTTTCCTTGTCGCCCTTATTAAGAATAGATGATTCAAAATACTCCGTCTCATAAGTGTCACTAAGTGACAAAATAAAATTGCCTCCAAATGTCACCTTAGAAATTCAAAGTAAAGATTAGTATGCATTTTCAACTAGAGAATTACTTCCTCCATTAAAAAATATTACTTGTTACGATTTCTTTTTTGAGAATCAAACTATATGAATATTGACTAATATTTTAGTCAGAATAAAAAAATACAATTTTGTAGTGTTTTTTATATGATTTTTGAATATTTTAATTTTTAATTTCAAAAAATCAAATTAATTTAATCTAATTTTAATTTGTGAATCGTAAAATAAAATATTATTCACATTGTTCTCAAAGCACAAAAGGAAGGGTGGGCAATAGGTATCACG</genome_strand>
        <mrna_strand>CAGATAAACTCATTTAATTTTGGGAATAGTCAATTTTCTTATTAGACTTTGTATTACTTTAGTTTGGTGGTTTCCTGCCAAAAGCACAATCTGGAGATTGATAGGCAGAGGCAGATCAGATGTGGAGGTCGAAAGGAGCAAATGCCAACTGCACCCCACTCTCTTGAAGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGCTGTATCCATAGAAGAGTGTTGATTGCCTAATGCGAGAAGAGATCTCAACAACATAATGGAACAGCATCATCATTAGTGAAATACTTGCGAGAGCAGCTTACTTGCAGTTGTGGAGAACAAGAAATATGCCCCAGTGATGAGAATCCACCAAAAAATCTAACTTGCTTATTACCCACCAGTGAAATTTGGCAAGCAAGAGTAACTCATAAAAATGAATCATCCTAGATTTACTTCACAGATCATACAGCTCTGAAAAAGTAGCTAACTGTAACTTATTTGAACACACGACAACAAAAGTTTAGTTCATATCTTAAATCATGAGAAACTTTCTATAAAA............................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAACTCGAACTAGTTCTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392362" ref_strand="-" ref_description="SGN-E392362 [TUS-35-F10]">
      <seq>ctggagattgataggcagaggcagatcagatgtggaggtcgaaaggagccaatgccaactgcaccccactctcttgaagaagagaagctgtatccatagaagagtgttgattgcctaatgcgagaagagatctcaacaacataatggaacagcatcatcattagtgaaatacttgcgagagcagcttacttgcagttgtggagaacaagaaatatgccccagtgatgagaatccaccaaaaaatctaacttgcttattacccaccagtgaaatttggcaagcaagagtaactcataaaaatgaatcatcctagatttacttcacagatcatacagctctgaaaaagtagctaactgtaacttatttgaacacacgacaacaaaagtttagttcatatcttaaatcatgagaaactttctataaaaaaaaaaaaaaaaaactcgaactagttctctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="96451" stop="62206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96151" g_stop="96071" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96070" i_stop="93876" i_length="2195">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93875" g_stop="93532" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="425" r_length="344" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93531" i_stop="93152" i_length="380">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.857" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93151" g_stop="93120" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="457" r_length="32" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E392362" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392362" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="96151" e_stop="96071"/>
          <exon e_start="93875" e_stop="93532"/>
          <exon e_start="93151" e_stop="93120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGAGATTGATAGGCAGAGGCAGATCAGATGTGGAGGTCGAAAGGAGCAAATGCCAACTGCACCCCACTCTCTTGAAGAAGTATGTTTTCTGTTAATATATACCAATTCTAATAGATATCTTATCAATATACAATGTTGGAGCTGAAAGCAGTCCAAATCCCTATTACATATACACTGTGTTCGCCCCTATTGACATATATCCTTGTTTTGTACATGCATTCCTTATTGTTCTCTAGAACTTTATCCTTTTTTTCTTCAATATGCATGGCTAACAATGACAAGGGGAAGTATTGAAAATAAATGCATAAAGTTTTCATGGCTAGCAATATCCAGAGGATATCGAAAGGGAGGGAGATCCATCTTCTACATTTAGCCAACTTTAGGAAAACCAGTATGCATATGATATGTTATTATTGAAAGTAGTTTGCATACTCCCTCTTCGAATAAGACAAAAGCAATAGAGACAGGTCTCATGTAGCTGCAATAAATTTTTTTTTATGTGCACATGACATATTTCAACTTATGACATCTTCATCAGCCAAAACTAGGATCATCAGGATATGTAAGACTTTAGCTTTGACTAGTTAGGTCTGAATCTCACTAGTCAAAACTAATTTCAAGGGGTTAACATACTAACAAATGCTGAAGATTATATATGAACTTGCAATATAAAATGTGATTTTGCGGAGTTACATCCAAGTCCTAGATAGATTCGTAGTTTATGTTGTGACACGGGTACTTAACATAGTAGCAACAAAAATCCACTTTCAGTAAGTTAGGATTCGAAAAAAAGGAGTCAGGATTCTTGACAAAAATTTCAGGGTTCTTGGAAAATATTACATTTTCAAAAAGCCACTTTTGATCAAGGGTTCTTTCTTGTTGAGATGCTTACATATGCTTGAGGGTCTTTTTTAGTGACTATGAATGGAACCATTCATGGTAGCTATAACTGAATATTCCTGGTTTGATAATGTCGCAGTTGATCAAATCAGTGTCTTCTAAAAATCAATAAGCAATAATCATTAAGCAGCATGTTCGGAGGAGCCCTTTTTATGCTTTCTTTCAGTCAAGTTTTGGTCCCTTTAGAACTCTATTCTTTACATTGAGTCCTCTTTAGCTTCTGCTTCTTCAATAAGAAAGATCAGTATCTGATCTTCATGCTATGATCAATGAAGACCCAAAAATAGACTGTATGATCTTCAATGTCAGATCTTCACACCATTATCAATTTGTTTCTCACTCTACTTTTCAGGTTATCATATCATGCTTGATATGAGTTACACTTTGTTACAAGTAAGTTTAACCTGATAGTCTCAGAACATAAAACTCAAATTTTTTCTCCCCATCTTTTACAAGTACGTGGTGACTCTGTTTCTTACTGAAACATGGAGGATGTATGCAGACTAAGTTAGACATGCTCATTAATTTCCATTGAGGAAACTTCAAGATCTTCTAGGCTGAAGAATAATTTAAACAAATAAATACTCTAATGGAACTTCTTAAAATAGCTATAAAGGCATACTGATTTGCATTATCCAAGTCCATTTCAGCAGGATCACAGGTGTGAGAAGTTAAGATAGGATGTTGCCAATTTTCGAAAAAGAAGTTAAGATGGGGTTAAATAGATAGCAAAGAGCAGAGATGCTGATTGATTATAGTAGAGAGGGGCAATGTTGATTTTAGAGATATTTGTAATAACCTGGTTCACAGTAGCTACCAGGTTACAAGTCACTTCCTTGCTTTTGGTGGTGGTCTCTTTTGCAATGGCTTAGTCCAGACAAGGCAATAACCCATCTAAAGCTGTATGAGCAGTGGGGTTTTGACTCCATTGCTACACAAGTGTATGTAGTCTTGCTGAAATGCACAGATAATTAAGAACAATAGAGATGTTTCACATACTGGATATGATAAAAACATAGATCAGAAGTAAGAATATTAGAGGTACCTTGATAGTAAGTCTATATTGGGTTATGTTGTTGGAAGTAAGAATATACAACAACATACCTAGTGTAATTCCACAGGTCAGGTCTCTCGACCATAGTCCTTATCCCTAGCTCATGGGGGGTAGAGATGTTATTTCCGATAGACCCTCGTCTTAAATAACTTGAAAGTAAGACTATGAATGTCATATTTGTTGTGATACCCCAAAATTACTTTGAGAAACAAGTTGTGCATGACCTTTTCCCTTATTTATGGTTTAGTTTGTAGAATATTTAACTTCTTTTGTATCCAACATCATGTTAAAAGTTCTAACTCCGTTTTATCCTGCTTTAGGAGAAGCTGTATCCATAGAAGAGTGTTGATTGCCTAATGCGAGAAGAGATCTCAACAACATAATGGAACAGCATCATCATTAGTGAAATACTTGCGAGAGCAGCTTACTTGCAGTTGTGGAGAACAAGAAATATGCCCCAGTGATGAGAATCCACCAAAAAATCTAACTTGCTTATTACCCACCAGTGAAATTTGGCAAGCAAGAGTAACTCATAAAAATGAATCATCCTAGATTTACTTCACAGATCATACAGCTCTGAAAAAGTAGCTAACTGTAACTTATTTGAACACACGACAACAAAAGTTTAGTTCATATCTTAAATCATGAGAAACTTTCTATAACATTCCCTCCGGTCTATTTTCCTTGTCGCCCTTATTAAGAATAGATGATTCAAAATACTCCGTCTCATAAGTGTCACTAAGTGACAAAATAAAATTGCCTCCAAATGTCACCTTAGAAATTCAAAGTAAAGATTAGTATGCATTTTCAACTAGAGAATTACTTCCTCCATTAAAAAATATTACTTGTTACGATTTCTTTTTTGAGAATCAAACTATATGAATATTGACTAATATTTTAGTCAGAATAAAAAAATACAATTTTGTAGTGTTTTTTATATGATTTTTGAATATTTTAATTTTTAATTTCAAAAAATCAAATTAATTTAATCTAATTTTAATTTGTGAATCGTAAAATAAAATATTATTCACATTGTTCTCAAAGCACAAAAGGAAGGGTGGGCAATAGGTATCACG</genome_strand>
        <mrna_strand>CTGGAGATTGATAGGCAGAGGCAGATCAGATGTGGAGGTCGAAAGGAGCCAATGCCAACTGCACCCCACTCTCTTGAAGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGCTGTATCCATAGAAGAGTGTTGATTGCCTAATGCGAGAAGAGATCTCAACAACATAATGGAACAGCATCATCATTAGTGAAATACTTGCGAGAGCAGCTTACTTGCAGTTGTGGAGAACAAGAAATATGCCCCAGTGATGAGAATCCACCAAAAAATCTAACTTGCTTATTACCCACCAGTGAAATTTGGCAAGCAAGAGTAACTCATAAAAATGAATCATCCTAGATTTACTTCACAGATCATACAGCTCTGAAAAAGTAGCTAACTGTAACTTATTTGAACACACGACAACAAAAGTTTAGTTCATATCTTAAATCATGAGAAACTTTCTATAAAA............................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAACTCGAACTAGTTCTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E275316" ref_strand="-" ref_description="SGN-E275316 [cLEN-9-H14]">
      <seq>gataaactcatctaattttgcgaatagtcaattttcttattagactttgtattactttagtttggtggtttcctgccaaaagcacaatctggagattgataggcagaggcagatcagatgtggaggtcgaaaggagcaaatgccaactgcaccccactctcttgaagaagagaagctgtatccatagaagagtgttgattgcctaatgcgagaagagatctcaacaacataatggaacagcatcatcattagtgaaatacttgcgagagcagcttacttgcagttgtggagaacaagaaatatgccccagtgatgagaatccaccaaaaaatctaacttgcttattacccaccagtgaaatttggcaagcaagagtaactcataaaaatgaatcatcctagatttacttcacagatcatacagctctgaaaaagtagctaactgtaacttatttgaacacacgacaacaaaagtttagttcatatcttaaatcatgagaaactttctataaaaaaaaaaaaaaaaaactcgaactagttctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="96539" stop="62206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96239" g_stop="96071" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96070" i_stop="93876" i_length="2195">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93875" g_stop="93532" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="513" r_length="344" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93531" i_stop="93152" i_length="380">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.857" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93151" g_stop="93121" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="544" r_length="31" r_score="0.516"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E275316" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275316" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="96239" e_stop="96071"/>
          <exon e_start="93875" e_stop="93532"/>
          <exon e_start="93151" e_stop="93121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAAACTCATCTAATTTTGCGAATAGTCAATTTTCTTATTAGACTTTGTATTACTTTAGTTTGGTGGTTTCCTGCCAAAAGCACAATCTGGAGATTGATAGGCAGAGGCAGATCAGATGTGGAGGTCGAAAGGAGCAAATGCCAACTGCACCCCACTCTCTTGAAGAAGTATGTTTTCTGTTAATATATACCAATTCTAATAGATATCTTATCAATATACAATGTTGGAGCTGAAAGCAGTCCAAATCCCTATTACATATACACTGTGTTCGCCCCTATTGACATATATCCTTGTTTTGTACATGCATTCCTTATTGTTCTCTAGAACTTTATCCTTTTTTTCTTCAATATGCATGGCTAACAATGACAAGGGGAAGTATTGAAAATAAATGCATAAAGTTTTCATGGCTAGCAATATCCAGAGGATATCGAAAGGGAGGGAGATCCATCTTCTACATTTAGCCAACTTTAGGAAAACCAGTATGCATATGATATGTTATTATTGAAAGTAGTTTGCATACTCCCTCTTCGAATAAGACAAAAGCAATAGAGACAGGTCTCATGTAGCTGCAATAAATTTTTTTTTATGTGCACATGACATATTTCAACTTATGACATCTTCATCAGCCAAAACTAGGATCATCAGGATATGTAAGACTTTAGCTTTGACTAGTTAGGTCTGAATCTCACTAGTCAAAACTAATTTCAAGGGGTTAACATACTAACAAATGCTGAAGATTATATATGAACTTGCAATATAAAATGTGATTTTGCGGAGTTACATCCAAGTCCTAGATAGATTCGTAGTTTATGTTGTGACACGGGTACTTAACATAGTAGCAACAAAAATCCACTTTCAGTAAGTTAGGATTCGAAAAAAAGGAGTCAGGATTCTTGACAAAAATTTCAGGGTTCTTGGAAAATATTACATTTTCAAAAAGCCACTTTTGATCAAGGGTTCTTTCTTGTTGAGATGCTTACATATGCTTGAGGGTCTTTTTTAGTGACTATGAATGGAACCATTCATGGTAGCTATAACTGAATATTCCTGGTTTGATAATGTCGCAGTTGATCAAATCAGTGTCTTCTAAAAATCAATAAGCAATAATCATTAAGCAGCATGTTCGGAGGAGCCCTTTTTATGCTTTCTTTCAGTCAAGTTTTGGTCCCTTTAGAACTCTATTCTTTACATTGAGTCCTCTTTAGCTTCTGCTTCTTCAATAAGAAAGATCAGTATCTGATCTTCATGCTATGATCAATGAAGACCCAAAAATAGACTGTATGATCTTCAATGTCAGATCTTCACACCATTATCAATTTGTTTCTCACTCTACTTTTCAGGTTATCATATCATGCTTGATATGAGTTACACTTTGTTACAAGTAAGTTTAACCTGATAGTCTCAGAACATAAAACTCAAATTTTTTCTCCCCATCTTTTACAAGTACGTGGTGACTCTGTTTCTTACTGAAACATGGAGGATGTATGCAGACTAAGTTAGACATGCTCATTAATTTCCATTGAGGAAACTTCAAGATCTTCTAGGCTGAAGAATAATTTAAACAAATAAATACTCTAATGGAACTTCTTAAAATAGCTATAAAGGCATACTGATTTGCATTATCCAAGTCCATTTCAGCAGGATCACAGGTGTGAGAAGTTAAGATAGGATGTTGCCAATTTTCGAAAAAGAAGTTAAGATGGGGTTAAATAGATAGCAAAGAGCAGAGATGCTGATTGATTATAGTAGAGAGGGGCAATGTTGATTTTAGAGATATTTGTAATAACCTGGTTCACAGTAGCTACCAGGTTACAAGTCACTTCCTTGCTTTTGGTGGTGGTCTCTTTTGCAATGGCTTAGTCCAGACAAGGCAATAACCCATCTAAAGCTGTATGAGCAGTGGGGTTTTGACTCCATTGCTACACAAGTGTATGTAGTCTTGCTGAAATGCACAGATAATTAAGAACAATAGAGATGTTTCACATACTGGATATGATAAAAACATAGATCAGAAGTAAGAATATTAGAGGTACCTTGATAGTAAGTCTATATTGGGTTATGTTGTTGGAAGTAAGAATATACAACAACATACCTAGTGTAATTCCACAGGTCAGGTCTCTCGACCATAGTCCTTATCCCTAGCTCATGGGGGGTAGAGATGTTATTTCCGATAGACCCTCGTCTTAAATAACTTGAAAGTAAGACTATGAATGTCATATTTGTTGTGATACCCCAAAATTACTTTGAGAAACAAGTTGTGCATGACCTTTTCCCTTATTTATGGTTTAGTTTGTAGAATATTTAACTTCTTTTGTATCCAACATCATGTTAAAAGTTCTAACTCCGTTTTATCCTGCTTTAGGAGAAGCTGTATCCATAGAAGAGTGTTGATTGCCTAATGCGAGAAGAGATCTCAACAACATAATGGAACAGCATCATCATTAGTGAAATACTTGCGAGAGCAGCTTACTTGCAGTTGTGGAGAACAAGAAATATGCCCCAGTGATGAGAATCCACCAAAAAATCTAACTTGCTTATTACCCACCAGTGAAATTTGGCAAGCAAGAGTAACTCATAAAAATGAATCATCCTAGATTTACTTCACAGATCATACAGCTCTGAAAAAGTAGCTAACTGTAACTTATTTGAACACACGACAACAAAAGTTTAGTTCATATCTTAAATCATGAGAAACTTTCTATAACATTCCCTCCGGTCTATTTTCCTTGTCGCCCTTATTAAGAATAGATGATTCAAAATACTCCGTCTCATAAGTGTCACTAAGTGACAAAATAAAATTGCCTCCAAATGTCACCTTAGAAATTCAAAGTAAAGATTAGTATGCATTTTCAACTAGAGAATTACTTCCTCCATTAAAAAATATTACTTGTTACGATTTCTTTTTTGAGAATCAAACTATATGAATATTGACTAATATTTTAGTCAGAATAAAAAAATACAATTTTGTAGTGTTTTTTATATGATTTTTGAATATTTTAATTTTTAATTTCAAAAAATCAAATTAATTTAATCTAATTTTAATTTGTGAATCGTAAAATAAAATATTATTCACATTGTTCTCAAAGCACAAAAGGAAGGGTGGGCAATAGGTATCAC</genome_strand>
        <mrna_strand>GATAAACTCATCTAATTTTGCGAATAGTCAATTTTCTTATTAGACTTTGTATTACTTTAGTTTGGTGGTTTCCTGCCAAAAGCACAATCTGGAGATTGATAGGCAGAGGCAGATCAGATGTGGAGGTCGAAAGGAGCAAATGCCAACTGCACCCCACTCTCTTGAAGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGCTGTATCCATAGAAGAGTGTTGATTGCCTAATGCGAGAAGAGATCTCAACAACATAATGGAACAGCATCATCATTAGTGAAATACTTGCGAGAGCAGCTTACTTGCAGTTGTGGAGAACAAGAAATATGCCCCAGTGATGAGAATCCACCAAAAAATCTAACTTGCTTATTACCCACCAGTGAAATTTGGCAAGCAAGAGTAACTCATAAAAATGAATCATCCTAGATTTACTTCACAGATCATACAGCTCTGAAAAAGTAGCTAACTGTAACTTATTTGAACACACGACAACAAAAGTTTAGTTCATATCTTAAATCATGAGAAACTTTCTATAAAA............................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAACTCGAACTAGTTCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E275269" ref_strand="-" ref_description="SGN-E275269 [cLEN-9-O22]">
      <seq>gattgataggcagaggcagatcagatgtggaggtcgaaaggagcaaatgccaactgcaccccactctcttgaagaagagaagctgtatccatagaagagtgttgattgcctaatgcgagaagagatctcaacaacataatggaacagcatcatcattagtgaaatacttgcgagagcagcttacttgcagttgtggagaacaagaaatatgccccagtgatgagaatccaccaaaaaatctaacttgcttattacccaccagtgaaatttggcaagcaagagtaactcataaaaatgaatcatcctagatttacttcacagatcatacagctctgaaaaagtagctaactgtaacttatttgaacacacgacaacaaaagtttagttcatatcttaaatcatgagaaactttctataaaaaaaaaaaaaaaaaactcgaactagttctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="96446" stop="62206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96146" g_stop="96071" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96070" i_stop="93876" i_length="2195">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93875" g_stop="93532" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="420" r_length="344" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93531" i_stop="93152" i_length="380">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.857" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93151" g_stop="93121" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="451" r_length="31" r_score="0.516"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E275269" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275269" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="96146" e_stop="96071"/>
          <exon e_start="93875" e_stop="93532"/>
          <exon e_start="93151" e_stop="93121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGATAGGCAGAGGCAGATCAGATGTGGAGGTCGAAAGGAGCAAATGCCAACTGCACCCCACTCTCTTGAAGAAGTATGTTTTCTGTTAATATATACCAATTCTAATAGATATCTTATCAATATACAATGTTGGAGCTGAAAGCAGTCCAAATCCCTATTACATATACACTGTGTTCGCCCCTATTGACATATATCCTTGTTTTGTACATGCATTCCTTATTGTTCTCTAGAACTTTATCCTTTTTTTCTTCAATATGCATGGCTAACAATGACAAGGGGAAGTATTGAAAATAAATGCATAAAGTTTTCATGGCTAGCAATATCCAGAGGATATCGAAAGGGAGGGAGATCCATCTTCTACATTTAGCCAACTTTAGGAAAACCAGTATGCATATGATATGTTATTATTGAAAGTAGTTTGCATACTCCCTCTTCGAATAAGACAAAAGCAATAGAGACAGGTCTCATGTAGCTGCAATAAATTTTTTTTTATGTGCACATGACATATTTCAACTTATGACATCTTCATCAGCCAAAACTAGGATCATCAGGATATGTAAGACTTTAGCTTTGACTAGTTAGGTCTGAATCTCACTAGTCAAAACTAATTTCAAGGGGTTAACATACTAACAAATGCTGAAGATTATATATGAACTTGCAATATAAAATGTGATTTTGCGGAGTTACATCCAAGTCCTAGATAGATTCGTAGTTTATGTTGTGACACGGGTACTTAACATAGTAGCAACAAAAATCCACTTTCAGTAAGTTAGGATTCGAAAAAAAGGAGTCAGGATTCTTGACAAAAATTTCAGGGTTCTTGGAAAATATTACATTTTCAAAAAGCCACTTTTGATCAAGGGTTCTTTCTTGTTGAGATGCTTACATATGCTTGAGGGTCTTTTTTAGTGACTATGAATGGAACCATTCATGGTAGCTATAACTGAATATTCCTGGTTTGATAATGTCGCAGTTGATCAAATCAGTGTCTTCTAAAAATCAATAAGCAATAATCATTAAGCAGCATGTTCGGAGGAGCCCTTTTTATGCTTTCTTTCAGTCAAGTTTTGGTCCCTTTAGAACTCTATTCTTTACATTGAGTCCTCTTTAGCTTCTGCTTCTTCAATAAGAAAGATCAGTATCTGATCTTCATGCTATGATCAATGAAGACCCAAAAATAGACTGTATGATCTTCAATGTCAGATCTTCACACCATTATCAATTTGTTTCTCACTCTACTTTTCAGGTTATCATATCATGCTTGATATGAGTTACACTTTGTTACAAGTAAGTTTAACCTGATAGTCTCAGAACATAAAACTCAAATTTTTTCTCCCCATCTTTTACAAGTACGTGGTGACTCTGTTTCTTACTGAAACATGGAGGATGTATGCAGACTAAGTTAGACATGCTCATTAATTTCCATTGAGGAAACTTCAAGATCTTCTAGGCTGAAGAATAATTTAAACAAATAAATACTCTAATGGAACTTCTTAAAATAGCTATAAAGGCATACTGATTTGCATTATCCAAGTCCATTTCAGCAGGATCACAGGTGTGAGAAGTTAAGATAGGATGTTGCCAATTTTCGAAAAAGAAGTTAAGATGGGGTTAAATAGATAGCAAAGAGCAGAGATGCTGATTGATTATAGTAGAGAGGGGCAATGTTGATTTTAGAGATATTTGTAATAACCTGGTTCACAGTAGCTACCAGGTTACAAGTCACTTCCTTGCTTTTGGTGGTGGTCTCTTTTGCAATGGCTTAGTCCAGACAAGGCAATAACCCATCTAAAGCTGTATGAGCAGTGGGGTTTTGACTCCATTGCTACACAAGTGTATGTAGTCTTGCTGAAATGCACAGATAATTAAGAACAATAGAGATGTTTCACATACTGGATATGATAAAAACATAGATCAGAAGTAAGAATATTAGAGGTACCTTGATAGTAAGTCTATATTGGGTTATGTTGTTGGAAGTAAGAATATACAACAACATACCTAGTGTAATTCCACAGGTCAGGTCTCTCGACCATAGTCCTTATCCCTAGCTCATGGGGGGTAGAGATGTTATTTCCGATAGACCCTCGTCTTAAATAACTTGAAAGTAAGACTATGAATGTCATATTTGTTGTGATACCCCAAAATTACTTTGAGAAACAAGTTGTGCATGACCTTTTCCCTTATTTATGGTTTAGTTTGTAGAATATTTAACTTCTTTTGTATCCAACATCATGTTAAAAGTTCTAACTCCGTTTTATCCTGCTTTAGGAGAAGCTGTATCCATAGAAGAGTGTTGATTGCCTAATGCGAGAAGAGATCTCAACAACATAATGGAACAGCATCATCATTAGTGAAATACTTGCGAGAGCAGCTTACTTGCAGTTGTGGAGAACAAGAAATATGCCCCAGTGATGAGAATCCACCAAAAAATCTAACTTGCTTATTACCCACCAGTGAAATTTGGCAAGCAAGAGTAACTCATAAAAATGAATCATCCTAGATTTACTTCACAGATCATACAGCTCTGAAAAAGTAGCTAACTGTAACTTATTTGAACACACGACAACAAAAGTTTAGTTCATATCTTAAATCATGAGAAACTTTCTATAACATTCCCTCCGGTCTATTTTCCTTGTCGCCCTTATTAAGAATAGATGATTCAAAATACTCCGTCTCATAAGTGTCACTAAGTGACAAAATAAAATTGCCTCCAAATGTCACCTTAGAAATTCAAAGTAAAGATTAGTATGCATTTTCAACTAGAGAATTACTTCCTCCATTAAAAAATATTACTTGTTACGATTTCTTTTTTGAGAATCAAACTATATGAATATTGACTAATATTTTAGTCAGAATAAAAAAATACAATTTTGTAGTGTTTTTTATATGATTTTTGAATATTTTAATTTTTAATTTCAAAAAATCAAATTAATTTAATCTAATTTTAATTTGTGAATCGTAAAATAAAATATTATTCACATTGTTCTCAAAGCACAAAAGGAAGGGTGGGCAATAGGTATCAC</genome_strand>
        <mrna_strand>GATTGATAGGCAGAGGCAGATCAGATGTGGAGGTCGAAAGGAGCAAATGCCAACTGCACCCCACTCTCTTGAAGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGCTGTATCCATAGAAGAGTGTTGATTGCCTAATGCGAGAAGAGATCTCAACAACATAATGGAACAGCATCATCATTAGTGAAATACTTGCGAGAGCAGCTTACTTGCAGTTGTGGAGAACAAGAAATATGCCCCAGTGATGAGAATCCACCAAAAAATCTAACTTGCTTATTACCCACCAGTGAAATTTGGCAAGCAAGAGTAACTCATAAAAATGAATCATCCTAGATTTACTTCACAGATCATACAGCTCTGAAAAAGTAGCTAACTGTAACTTATTTGAACACACGACAACAAAAGTTTAGTTCATATCTTAAATCATGAGAAACTTTCTATAAAA............................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAACTCGAACTAGTTCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E423591" ref_strand="-" ref_description="SGN-E423591 [STM-42-C6]">
      <seq>tgctgctgtcagttccaaaggcttgcttttgacaaatgatgagatgagagaccatttgttccaactattaggcactagcttttttcccagatggaaggaaaaacatcagatccggatgacagcttcaagagatgacggacttaagctccatatgccaccaccctattcaattgttattcaggagtcggagcagggttgttggcatgtgccaactcttactggagatgaccttgagataccaagacagtgggtatgtgctaccaggaaaaaagctctgcactctctatttcgacgaaatggggaatcaaatcattaacatttatatgtggtttctgggacagcatcagtgaagcaactatgtatgagtgcctttttcctttgaagaagcttataatttgaacttctcgaaggttgttgtagatggagatcaggaagatcgctaaatgcaaaagttctggatacagtcaacatctatataacagtctagtttcattatcttgtatactagtttttgcttctgtgttctggagtatttctgtattcggtcaaatattttgcaacaatttttcctgttacaagtgttagaaggaaaaagtgctgccacaatagaagaatggcgcctttgaaactcaaagaggatattcctgcatttttaatacttaattggctggtccctgagtacaagaagaaaaacagcttatgaagttcaaattattttcctttgaatagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98139" stop="96285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97839" g_stop="97731" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97730" i_stop="97295" i_length="436">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97294" g_stop="97223" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="181" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97222" i_stop="97127" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97126" g_stop="96585" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="732" r_length="551" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E423591" ref_strand="-">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E423591" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="97839" e_stop="97731"/>
          <exon e_start="97294" e_stop="97223"/>
          <exon e_start="97126" e_stop="96585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGCTGTCAGTTCCAAAGGCTTGCTTTTGACAAATGATGAGATGAGAGACCATTTGTTCCAACTATTAGGCACTAGCTTTTTTCCCAGATGGAAGGAAAAACATCAGGTCTAATCTCTCTCTCGCACTATTCTGTAACATGTTAAACAATGAAAAGTTGGAATCCTTATTACAGTGCTATAGAGTCCTCTATTACAGTTCCTACTAAAGATAGAGTAAAAAAAAGGGTACTCTTTTTAGTGTATAGTAGCTTAATATCTGTATAAGTAGGTTATGCCAAAATAAAAAAGAAGAAGAAAGACAGTTATGCTGAGAAAAAGGTGAAGTCCTGTTACACTGTTCCTATTAAATTACCAAAATTCTTCATTATAGCTGGTTGTCAAAGAATGCAGAGATAGGTGCAGGGTTGTGAGAATTGAAGTTCTCCTAAAGAACTCGTCTGATGGAGCTGAGAGAGTTTATGTTATTGGGGTTAATGGTGATGCTTTTAAATAAGGCAATCAACAGTTAGATTCCATAACGGTCTTCTATTTACAAATTGCAGATCCGGATGACAGCTTCAAGAGATGACGGACTTAAGCTCCATATGCCACCACCCTATTCAATTGTTATTCAGGTGAGCCATCTCATGACTAATCCATATAATTTAAGCTCACCTTAGCTGTTATTCTAATGTCCAACTCTACTTTGTACGTGTGAAATTGAAATGTAGGAGTCAGAGCAGGGTTGTTGGCATATACCAACTCTTACTGGAGATGACCTTGAGATACCAAGACAGTGGGTATGTGCTACCAGGAAAAAAGCACTGCACTCTGTCTTTCGATGAACT-GGGAATCAAATCATTAACATATAAATGTGATTTCTGGGACAGCATCAGTGAAGCAACCATGCATGAGTGCTTTTTTTCTTTGAAGAAGCTTATAATTTGAACTTCTCATAGGTTGTTGTAGATGGAGATCAGGAAGATCGCTAAATGCAAAAGTTTCTGGATACAGTCAACGTCTCTATAACAGTCTAGTTTTATTATCTTGTATACTAGTTTTTGCTTGTGTGTTCTGGAGTA----T-T-TT--GTCAATTTTTTTGTAACAATTTTGCCAGTTACAAGTGTTAGAAGGAAAAAGTTCTGCCACAATAGAAGAATCGTGCTTTTGAAACTCAAAGAGGATATTGCTGCATTT-TAATATTTAATTTGCTGGTCCCTGAGTACAAGAAGAAAAACAGCTTATGAAGTTCAAATTATTTATCTTTGAATAGAAA</genome_strand>
        <mrna_strand>TGCTGCTGTCAGTTCCAAAGGCTTGCTTTTGACAAATGATGAGATGAGAGACCATTTGTTCCAACTATTAGGCACTAGCTTTTTTCCCAGATGGAAGGAAAAACATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGGATGACAGCTTCAAGAGATGACGGACTTAAGCTCCATATGCCACCACCCTATTCAATTGTTATTCAG................................................................................................GAGTCGGAGCAGGGTTGTTGGCATGTGCCAACTCTTACTGGAGATGACCTTGAGATACCAAGACAGTGGGTATGTGCTACCAGGAAAAAAGCTCTGCACTCTCTATTTCGACGAAATGGGGAATCAAATCATTAACATTTATATGTGGTTTCTGGGACAGCATCAGTGAAGCAACTATGTATGAGTGCCTTTTTCCTTTGAAGAAGCTTATAATTTGAACTTCTCGAAGGTTGTTGTAGATGGAGATCAGGAAGATCGCTAAATGCAAAAG-TTCTGGATACAGTCAACATCTATATAACAGTCTAGTTTCATTATCTTGTATACTAGTTTTTGCTTCTGTGTTCTGGAGTATTTCTGTATTCGGTCAAATATTTTGCAACAATTTTTCCTGTTACAAGTGTTAGAAGGAAAAAGTGCTGCCACAATAGAAGAATGGCGCCTTTGAAACTCAAAGAGGATATTCCTGCATTTTTAATACTTAATTGGCTGGTCCCTGAGTACAAGAAGAAAAACAGCTTATGAAGTTCAAATTATTTTCCTTTGAATAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745849" ref_strand="+" ref_description="SGN-E745849 [GI|47104967]">
      <seq>gaccgaggtaaaaggccaatccccattaaagcagagtcatgctcgttcgtcgtatgggttatatctcaccttctctttctataaaaacctcacctttcttctctattctcacaaaaaacccttttccatttcatcatcttcatcctatccaattcttcaaaccaattcacaccaaatccccacaaacccatctcttttccatgaaccaaaaaccccatttcaccacttccgctgcttttctccaagaacccacaaacacaaaaacattgtctaacaggtcggccaagaaagctcgccgtgacgcccctgagagtgtgctgcgtcatcagttagaccagtgttctaaacggggtgatttacaggaagcaattcgactttatgaagaagctaagttaaacaatattacccttaatgttcatcattataatgtgttgctttatctttgttcttctggttcgggtactgagggatgtgggattgagaaaggatttctgatttttaaacagatgggggttaatggtgttgctccgaatgaggcgacgtttactagtgctgctagattggcagttgctaagcaagacccagaaatggcttttgatttagtgaagaaaatgaagagttttggtgttcctcctaagttaagatcatatggcccagcgttgtttgggttttgtgaaaagggaatggctgataaggcttatgaggttgatgtacatatgggggaatcaggggttgtggctgaggaagcagagctttctgctctgttgaaagttagttctttttctaaaaaggctgataaagtatatgaaatgatgcatagattaagggcaagtgtaaggcaggtgtgtgaagagactgttggtgtagtagaggattgatttaattctgaatatgctgctgaggttgggctgcaggattgggatgctcggaaagtgaaggaaggtgttgtgaaaggaggaggtggttggcatggacaagggtggttgggaaaggggaattggactgtagtgagggcggagatggatagttccggagtttgccgttcatgtggggaaaagcttgtgtgcattgacattgatcctaaggagacagagaactttgctaattccttggctgaattggcttctgaaagagaagtcaaggctaattttgtgcaatttcaggactggcttcagaagcatggtccattcgatgccgtggtggatggtgcaaatgtcggccttatcactcaacgaaattttaatttctcccagcttaggtctgttgtcaataaattaaggcagatgagtgaatcgaagaaacttccattggttattttgcacaaaagccgtacaactggtggtcctgctcaacatcctaataacaagaagctgttagaaagctggaagaaagcaggtgcactttatgccactccacatggttcaaatgatgattggtactggttatatgctgctgtcagttccaaaggcttgcttttgacaaatgatgagatgagagaccatttgttccaactattaggcactagcttttttcccagatggaaggaaaaacatcagatccggatgacagcttcaagagatgacggacttaagctccatatgccaccaccctattcaattgttattcaggagtcagagcagggttgttggcatataccaactcttactggagatgaccttgagataccaagacagtgggtatgtgctaccaggaaaaaagcactgcactctgtctttcgatgaactgggaatcaaatcattaacatataaatgtgatttctgggacagcatcagtgaagcaaccatgcatgagtgctttttttctttgaagaagcttataatttgaacttctcataggttgttgtagatggagatcaggaagatcgctaaatgcaaaagtttctggatacagtcaacgtctctataacagtctagttttattatcttgtatactagtttttgcttgtgtgttctggagtattttgtcaatttttttgtaacaattttgccagttacaagtgttagaaggaaaaagttctgccacaatagaagaatcgtgcttttgaaactcaaagaggatattgctgcattttaatatttaatttgctggtccctgagtacaagaggaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102186" stop="96322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101887" g_stop="100725" g_length="1163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1163" r_length="1163" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100724" i_stop="99364" i_length="1361">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.349" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99363" g_stop="99274" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1164" r_stop="1253" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99273" i_stop="98767" i_length="507">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98766" g_stop="98585" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1254" r_stop="1435" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98584" i_stop="97852" i_length="733">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.025" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97851" g_stop="97731" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1436" r_stop="1556" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="97730" i_stop="97295" i_length="436">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97294" g_stop="97223" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1557" r_stop="1628" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97222" i_stop="97127" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97126" g_stop="96614" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1629" r_stop="2141" r_length="513" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E745849" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>2141</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101887" e_stop="100725"/>
          <exon e_start="99363" e_stop="99274"/>
          <exon e_start="98766" e_stop="98585"/>
          <exon e_start="97851" e_stop="97731"/>
          <exon e_start="97294" e_stop="97223"/>
          <exon e_start="97126" e_stop="96614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCGAGGTAAAAGGCCAATCCCCATTAAAGCAGAGTCATGCTCGTTCGTCGTATGGGTTATATCTCACCTTCTCTTTCTATAAAAACCTCACCTTTCTTCTCTATTCTCACAAAAAACCCTTTTCCATTTCATCATCTTCATCCTATCCAATTCTTCAAACCAATTCACACCAAATCCCCACAAACCCATCTCTTTTCCATGAACCAAAAACCCCATTTCACCACTTCCGCTGCTTTTCTCCAAGAACCCACAAACACAAAAACATTGTCTAACAGGTCGGCCAAGAAAGCTCGCCGTGACGCCCCTGAGAGTGTGCTGCGTCATCAGTTAGACCAGTGTTCTAAACGGGGTGATTTACAGGAAGCAATTCGACTTTATGAAGAAGCTAAGTTAAACAATATTACCCTTAATGTTCATCATTATAATGTGTTGCTTTATCTTTGTTCTTCTGGTTCGGGTACTGAGGGATGTGGGATTGAGAAAGGATTTCTGATTTTTAAACAGATGGGGGTTAATGGTGTTGCTCCGAATGAGGCGACGTTTACTAGTGCTGCTAGATTGGCAGTTGCTAAGCAAGACCCAGAAATGGCTTTTGATTTAGTGAAGAAAATGAAGAGTTTTGGTGTTCCTCCTAAGTTAAGATCATATGGCCCAGCGTTGTTTGGGTTTTGTGAAAAGGGAATGGCTGATAAGGCTTATGAGGTTGATGTACATATGGGGGAATCAGGGGTTGTGGCTGAGGAAGCAGAGCTTTCTGCTCTGTTGAAAGTTAGTTCTTTTTCTAAAAAGGCTGATAAAGTATATGAAATGATGCATAGATTAAGGGCAAGTGTAAGGCAGGTGTGTGAAGAGACTGTTGGTGTAGTAGAGGATTGGTTTAATTCTGAATATGCTGCTGAGGTTGGGCTGCAGGATTGGGATGCTCGGAAAGTGAAGGAAGGTGTTGTGAAAGGAGGAGGTGGTTGGCATGGACAAGGGTGGTTGGGAAAGGGGAATTGGACTGTAGTGAGGGCGGAGATGGATAGTTCCGGAGTTTGCCGTTCATGTGGGGAAAAGCTTGTGTGCATTGACATTGATCCTAAGGAGACAGAGAACTTTGCTAATTCCTTGGCTGAATTGGCTTCTGAAAGAGAAGTCAAGGCTAATTTTGTGCAATTTCAGGTCTGTTGATTTTCTTCTGGTGCATTTTATAAATTACTTGTTACATAAAGTGTTACCCTTCTTCTTGGGCTAAATGGTAGGAATTATATGTATTTCTCCTGTTGGTATTAAGATTTTTGCGTCCAGTTAACTGAAGTATTGATTAATTGTTTGAATACTTGCCAGGATATCCTACATGGTTCATTGTATTAGTGTTTTTAGAAGTCTGTTTTTGTTTTGATGAAGTAATTGACTTAATTAATGACATTAACAAGATGCGAAATAATTACAAAATATAGAAGCAATGCTCATGATAGTGACTGAGGGCTCACATGATATATGCTTTGATGAACTCCACGGATTCTTGGTAGAAAGCCATTGTGTATTCATCAGGACCAGGCCTTGTCTAGTGTACATGACTGTATAGCTGCTAACACTTTTAGAAGTTTCAAGTAAGTCTAACACTTAATTGCATTAAGCACCTTCGACTCATGGATGGCTTTGCCATAAAGTTTAGATATGCATTCCTGCTGCTGCCATCCCAAAGAGCAAAGCATTGAAGTTAAATCAACCCCATCAAATAAATATAAAAGAAATAAAAGGGTACTTTGTCTAGATATATTATACTTGGAGATTATAGGTTGGAATTCCCTTATAGGATTTTGATGAAGGCCTCTATGATTTCTTTTTGATGACTAATAAGATTTTATAGCACGTTTGGGCAAAAAACCATGTACAACTAGTATACCAAGATAAGTAGAAAATCTATAACAAAGTATGATTTTCTATGAACGTCACCCACTAATCTATACATAAAGGAAATTCGTGAATGCACTAAAACGAAATTAGGGCTAAGAGGCTATTCATCAACTGTGCAAAATCACTACCCTCAAAAGCTCTCCTATTTCCTTCTCTCCAAACAATCCACTAAGTGCGAGTGGAGCAATCTTCCAGGCCCTACTTCCTCTCCTCCACTTTGCACAGTTCTAGGTAACTTCAGTTCTTACGTGATGCCTGGCATAACCCACTGAAGGCCTCTATGATATGTCAGATATAGTGATAGGTTGGGAATAAAGCTGTCTGCTTTTGTCTTTATTATGTAGTGTTGTATGCAAACAATAAAATAGGATCATGATGTTGTAACACAAATAAATAGCTCATATGATTGTTTATGTCAACCTCTACGATTAGCATTTATGATTTAACACTCTTATGTGTGGTGATTCTTTAAAGCATGAATCTTCTGAAATATCGTTACCACAGATATATTCATTTAAAGTAGGTAAAATGCTTCTGTGTATTTCCAATATTTGTTGTCTCCTTGCTTCAGGCATTCAGTGCTTGAAAGAATATTGAACTGATATAGAGTTGCACTCACTCAGGACTGGCTTCAGAAGCATGGTCCATTCGATGCCGTGGTGGATGGTGCAAATGTCGGCCTTATCACTCAACGAAATTTTAATTTCTCCCAGGTAGAACTACATTTTTTCCTGTCTTTTCTTGTGTTTTTTCTTTGGGTGTGTGGATGGGAGGGTAGAATTAGGGATGCAGTTTGATATGTGTATAGAAGTTAATCATATATATTTCAGCGGTAGAGAGGGTGACTCTCGGACTTACTTACCATCCCTATATTCGTTTATTTAGCATGACCAAGAAATATAACTTACTTTGCGTCCCTCTTTTTGTGTTATTTAGTATGACTAAGAAAGAGAGAGAGACACAGAATAACTGCCCCTTTCTGTTTAACTTCATAGAAATTGATGATGCTAATGTGGAATAGGTTGCAAAGTCTTCCAGTTTTAATTTATCAAAATGACCCTTATGCCCAGTTCCTTCCCACCCACCCACCTAGGCACCCACTGTCTAGTATGGATTCGTTATCTCTTAAGTAGTGACGGGAAGCGTACCAACTTCTCAAGATGATGTTCTAGCTAGGTATTGTATAAGAAAGAGTTCATATAGATTTCTTTCTATTGCAGCTTAGGTCTGTTGTCAATAAATTAAGGCAGATGAGTGAATCGAAGAAACTTCCATTGGTTATTTTGCACAAAAGCCGTACAACTGGTGGTCCTGCTCAACATCCTAATAACAAGAAGCTGTTAGAAAGCTGGAAGAAAGCAGGTGCACTTTATGCCACTCCACATGGTTCAAATGATGATTGGTAATACTCTTTACTTTGAGCTCTTACATGCAAATAGGAATTGGTGGCTAGTAGGTAGGTGAACTTATTTGTTTCCAAGAGGGTACAACTCATATATAATTAAATTTTATGGGAGAAAAAGTAATCTATTTAAACAGATGCCATCAACATAATAGTGATGTTGCTCAGCAAATTACTGAACATACCAAGAAACCCGTCTCCATAAATGGATATGATGGTATATCCGTATCTCTTTTCTTGACTAGTCTTGCTTTCTTGCAGTTACTGCTAGTGTTGCCCAGCTGTTTGAGTCCACATTTCTGCTGTCCTTTCCTGCAACTGTTAGCCTGTTCTTTTTCTGTGTCATTCCATTCAATTCTTTATTCTTTGTTGGGACCAAAGTCGCTCTTGCACACTTTTCTTCTTCTCTCTTTAAGTGTCTGGTTGTCATCAACATTTTTCCTCCATTCAAGATCAAATTGTTCTTCTCCACATTGCTCAATGCGCACAACTTTTTTTGTTGGGATCAACACACATAACTTCAACTCATCATGACATGAAGATCTGACATTGAACATGAAACAATTGCTTCACCTTTCCCTTCTTTGGATGAAATTCTGACTGGCGCCAGATGCAAATTCTAGGTTGTACCAGACACCCTTAATATATAACCAGTGTAGCTCTTGTTGGTTGGCTTTTGTTTTGTGAGTGCTTTCATATTATGGCTTTTCTGAGGCGTAAGCTTATTCTCCAGGTACTGGTTATATGCTGCTGTCAGTTCCAAAGGCTTGCTTTTGACAAATGATGAGATGAGAGACCATTTGTTCCAACTATTAGGCACTAGCTTTTTTCCCAGATGGAAGGAAAAACATCAGGTCTAATCTCTCTCTCGCACTATTCTGTAACATGTTAAACAATGAAAAGTTGGAATCCTTATTACAGTGCTATAGAGTCCTCTATTACAGTTCCTACTAAAGATAGAGTAAAAAAAAGGGTACTCTTTTTAGTGTATAGTAGCTTAATATCTGTATAAGTAGGTTATGCCAAAATAAAAAAGAAGAAGAAAGACAGTTATGCTGAGAAAAAGGTGAAGTCCTGTTACACTGTTCCTATTAAATTACCAAAATTCTTCATTATAGCTGGTTGTCAAAGAATGCAGAGATAGGTGCAGGGTTGTGAGAATTGAAGTTCTCCTAAAGAACTCGTCTGATGGAGCTGAGAGAGTTTATGTTATTGGGGTTAATGGTGATGCTTTTAAATAAGGCAATCAACAGTTAGATTCCATAACGGTCTTCTATTTACAAATTGCAGATCCGGATGACAGCTTCAAGAGATGACGGACTTAAGCTCCATATGCCACCACCCTATTCAATTGTTATTCAGGTGAGCCATCTCATGACTAATCCATATAATTTAAGCTCACCTTAGCTGTTATTCTAATGTCCAACTCTACTTTGTACGTGTGAAATTGAAATGTAGGAGTCAGAGCAGGGTTGTTGGCATATACCAACTCTTACTGGAGATGACCTTGAGATACCAAGACAGTGGGTATGTGCTACCAGGAAAAAAGCACTGCACTCTGTCTTTCGATGAACTGGGAATCAAATCATTAACATATAAATGTGATTTCTGGGACAGCATCAGTGAAGCAACCATGCATGAGTGCTTTTTTTCTTTGAAGAAGCTTATAATTTGAACTTCTCATAGGTTGTTGTAGATGGAGATCAGGAAGATCGCTAAATGCAAAAGTTTCTGGATACAGTCAACGTCTCTATAACAGTCTAGTTTTATTATCTTGTATACTAGTTTTTGCTTGTGTGTTCTGGAGTATTTTGTCAATTTTTTTGTAACAATTTTGCCAGTTACAAGTGTTAGAAGGAAAAAGTTCTGCCACAATAGAAGAATCGTGCTTTTGAAACTCAAAGAGGATATTGCTGCATTTTAATATTTAATTTGCTGGTCCCTGAGTACAAGAAGAAAAACAGCTTATGA</genome_strand>
        <mrna_strand>GACCGAGGTAAAAGGCCAATCCCCATTAAAGCAGAGTCATGCTCGTTCGTCGTATGGGTTATATCTCACCTTCTCTTTCTATAAAAACCTCACCTTTCTTCTCTATTCTCACAAAAAACCCTTTTCCATTTCATCATCTTCATCCTATCCAATTCTTCAAACCAATTCACACCAAATCCCCACAAACCCATCTCTTTTCCATGAACCAAAAACCCCATTTCACCACTTCCGCTGCTTTTCTCCAAGAACCCACAAACACAAAAACATTGTCTAACAGGTCGGCCAAGAAAGCTCGCCGTGACGCCCCTGAGAGTGTGCTGCGTCATCAGTTAGACCAGTGTTCTAAACGGGGTGATTTACAGGAAGCAATTCGACTTTATGAAGAAGCTAAGTTAAACAATATTACCCTTAATGTTCATCATTATAATGTGTTGCTTTATCTTTGTTCTTCTGGTTCGGGTACTGAGGGATGTGGGATTGAGAAAGGATTTCTGATTTTTAAACAGATGGGGGTTAATGGTGTTGCTCCGAATGAGGCGACGTTTACTAGTGCTGCTAGATTGGCAGTTGCTAAGCAAGACCCAGAAATGGCTTTTGATTTAGTGAAGAAAATGAAGAGTTTTGGTGTTCCTCCTAAGTTAAGATCATATGGCCCAGCGTTGTTTGGGTTTTGTGAAAAGGGAATGGCTGATAAGGCTTATGAGGTTGATGTACATATGGGGGAATCAGGGGTTGTGGCTGAGGAAGCAGAGCTTTCTGCTCTGTTGAAAGTTAGTTCTTTTTCTAAAAAGGCTGATAAAGTATATGAAATGATGCATAGATTAAGGGCAAGTGTAAGGCAGGTGTGTGAAGAGACTGTTGGTGTAGTAGAGGATTGATTTAATTCTGAATATGCTGCTGAGGTTGGGCTGCAGGATTGGGATGCTCGGAAAGTGAAGGAAGGTGTTGTGAAAGGAGGAGGTGGTTGGCATGGACAAGGGTGGTTGGGAAAGGGGAATTGGACTGTAGTGAGGGCGGAGATGGATAGTTCCGGAGTTTGCCGTTCATGTGGGGAAAAGCTTGTGTGCATTGACATTGATCCTAAGGAGACAGAGAACTTTGCTAATTCCTTGGCTGAATTGGCTTCTGAAAGAGAAGTCAAGGCTAATTTTGTGCAATTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGCTTCAGAAGCATGGTCCATTCGATGCCGTGGTGGATGGTGCAAATGTCGGCCTTATCACTCAACGAAATTTTAATTTCTCCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAGGTCTGTTGTCAATAAATTAAGGCAGATGAGTGAATCGAAGAAACTTCCATTGGTTATTTTGCACAAAAGCCGTACAACTGGTGGTCCTGCTCAACATCCTAATAACAAGAAGCTGTTAGAAAGCTGGAAGAAAGCAGGTGCACTTTATGCCACTCCACATGGTTCAAATGATGATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGGTTATATGCTGCTGTCAGTTCCAAAGGCTTGCTTTTGACAAATGATGAGATGAGAGACCATTTGTTCCAACTATTAGGCACTAGCTTTTTTCCCAGATGGAAGGAAAAACATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGGATGACAGCTTCAAGAGATGACGGACTTAAGCTCCATATGCCACCACCCTATTCAATTGTTATTCAG................................................................................................GAGTCAGAGCAGGGTTGTTGGCATATACCAACTCTTACTGGAGATGACCTTGAGATACCAAGACAGTGGGTATGTGCTACCAGGAAAAAAGCACTGCACTCTGTCTTTCGATGAACTGGGAATCAAATCATTAACATATAAATGTGATTTCTGGGACAGCATCAGTGAAGCAACCATGCATGAGTGCTTTTTTTCTTTGAAGAAGCTTATAATTTGAACTTCTCATAGGTTGTTGTAGATGGAGATCAGGAAGATCGCTAAATGCAAAAGTTTCTGGATACAGTCAACGTCTCTATAACAGTCTAGTTTTATTATCTTGTATACTAGTTTTTGCTTGTGTGTTCTGGAGTATTTTGTCAATTTTTTTGTAACAATTTTGCCAGTTACAAGTGTTAGAAGGAAAAAGTTCTGCCACAATAGAAGAATCGTGCTTTTGAAACTCAAAGAGGATATTGCTGCATTTTAATATTTAATTTGCTGGTCCCTGAGTACAAGAGGAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392361" ref_strand="-" ref_description="SGN-E392361 [TUS-35-F10](-)">
      <seq>tgccgcggacttaagctccatatgccacctccctattcaattgttattcaggagtcagagcagggttgttggcatataccaactcttactggagatgaccttgagataccaagacagtgggtatgtgctaccaggaaaaaatcactgcactctgtctttcgatgaactgggaatcaaatcattaacatataaatgtgatttctgggacagcatcagtgaagcaaccatgcatgagtgctttttttctttgaagaagcttataatttgaacttctcataggttgctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="97568" stop="96591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97274" g_stop="97223" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.904"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97222" i_stop="97127" i_length="96">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97126" g_stop="96891" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="287" r_length="236" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E392361" ref_strand="-">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>288</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392361" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="97274" e_stop="97223"/>
          <exon e_start="97126" e_stop="96891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGACGGACTTAAGCTCCATATGCCACCACCCTATTCAATTGTTATTCAGGTGAGCCATCTCATGACTAATCCATATAATTTAAGCTCACCTTAGCTGTTATTCTAATGTCCAACTCTACTTTGTACGTGTGAAATTGAAATGTAGGAGTCAGAGCAGGGTTGTTGGCATATACCAACTCTTACTGGAGATGACCTTGAGATACCAAGACAGTGGGTATGTGCTACCAGGAAAAAAGCACTGCACTCTGTCTTTCGATGAACTGGGAATCAAATCATTAACATATAAATGTGATTTCTGGGACAGCATCAGTGAAGCAACCATGCATGAGTGCTTTTTTTCTTTGAAGAAGCTTATAATTTGAACTTCTCATAGGTTGTTGT</genome_strand>
        <mrna_strand>TGCCG-CGGACTTAAGCTCCATATGCCACCTCCCTATTCAATTGTTATTCAG................................................................................................GAGTCAGAGCAGGGTTGTTGGCATATACCAACTCTTACTGGAGATGACCTTGAGATACCAAGACAGTGGGTATGTGCTACCAGGAAAAAATCACTGCACTCTGTCTTTCGATGAACTGGGAATCAAATCATTAACATATAAATGTGATTTCTGGGACAGCATCAGTGAAGCAACCATGCATGAGTGCTTTTTTTCTTTGAAGAAGCTTATAATTTGAACTTCTCATAGGTTGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709111" ref_strand="+" ref_description="SGN-E709111 [FA42CH08]">
      <seq>cgctgagatggatagttccggagtttgccgttcatgtggggaaaagcttgtgtgcattgacattgatcctaaggagacagagaactttgctaattccttggctgaattggcttctgaaagagaagtcaaggctaattttgtgcaatttcaggactggcttcagaagcatggtccattcgatgccgtggtggatggtgcaaatgtcggccttatcactcaacgaaattttaatttctcccagcttaggtctgttgtcaataaattaaggcagatgagtgaatcgaagaaacttccattggttattttgcacaaaagccgtacaactggtggtcctgctcaacatcctaataacaagaagctgttagaaagctggaagaaagcaggtgcactttatgccactccacatggttcaaatgatgattggtactggttatatgctgctgtcagttccaaaggcttgcttttgacaaatgatgagatgagagaccatttgttccaactattaggcactagcttttttcccagatggaaggaaaaacatcagatccggatgacagcttcaagagatgacggacttaagctccatatgccaccaccctattcaattgttattcaggagtcagagcagggttgttggcatataccaactcttactggagatgaccttgagataccaagacagtgggtatgtgctaccaggaaaaaagcactgcactctgtctttcgatgaactgggaatcaaatcattaacatataaatgtgatttctgggacagcatcagtgaagcaaccatgcatgagtgctttttttctttgaagaagcttataatttgaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="101174" stop="96606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100875" g_stop="100725" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100724" i_stop="99364" i_length="1361">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.349" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99363" g_stop="99274" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="241" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99273" i_stop="98767" i_length="507">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98766" g_stop="98585" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="423" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98584" i_stop="97852" i_length="733">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.025" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97851" g_stop="97731" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="544" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="97730" i_stop="97295" i_length="436">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97294" g_stop="97223" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="616" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97222" i_stop="97127" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97126" g_stop="96906" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="837" r_length="221" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E709111" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>837</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100875" e_stop="100725"/>
          <exon e_start="99363" e_stop="99274"/>
          <exon e_start="98766" e_stop="98585"/>
          <exon e_start="97851" e_stop="97731"/>
          <exon e_start="97294" e_stop="97223"/>
          <exon e_start="97126" e_stop="96906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGGAGATGGATAGTTCCGGAGTTTGCCGTTCATGTGGGGAAAAGCTTGTGTGCATTGACATTGATCCTAAGGAGACAGAGAACTTTGCTAATTCCTTGGCTGAATTGGCTTCTGAAAGAGAAGTCAAGGCTAATTTTGTGCAATTTCAGGTCTGTTGATTTTCTTCTGGTGCATTTTATAAATTACTTGTTACATAAAGTGTTACCCTTCTTCTTGGGCTAAATGGTAGGAATTATATGTATTTCTCCTGTTGGTATTAAGATTTTTGCGTCCAGTTAACTGAAGTATTGATTAATTGTTTGAATACTTGCCAGGATATCCTACATGGTTCATTGTATTAGTGTTTTTAGAAGTCTGTTTTTGTTTTGATGAAGTAATTGACTTAATTAATGACATTAACAAGATGCGAAATAATTACAAAATATAGAAGCAATGCTCATGATAGTGACTGAGGGCTCACATGATATATGCTTTGATGAACTCCACGGATTCTTGGTAGAAAGCCATTGTGTATTCATCAGGACCAGGCCTTGTCTAGTGTACATGACTGTATAGCTGCTAACACTTTTAGAAGTTTCAAGTAAGTCTAACACTTAATTGCATTAAGCACCTTCGACTCATGGATGGCTTTGCCATAAAGTTTAGATATGCATTCCTGCTGCTGCCATCCCAAAGAGCAAAGCATTGAAGTTAAATCAACCCCATCAAATAAATATAAAAGAAATAAAAGGGTACTTTGTCTAGATATATTATACTTGGAGATTATAGGTTGGAATTCCCTTATAGGATTTTGATGAAGGCCTCTATGATTTCTTTTTGATGACTAATAAGATTTTATAGCACGTTTGGGCAAAAAACCATGTACAACTAGTATACCAAGATAAGTAGAAAATCTATAACAAAGTATGATTTTCTATGAACGTCACCCACTAATCTATACATAAAGGAAATTCGTGAATGCACTAAAACGAAATTAGGGCTAAGAGGCTATTCATCAACTGTGCAAAATCACTACCCTCAAAAGCTCTCCTATTTCCTTCTCTCCAAACAATCCACTAAGTGCGAGTGGAGCAATCTTCCAGGCCCTACTTCCTCTCCTCCACTTTGCACAGTTCTAGGTAACTTCAGTTCTTACGTGATGCCTGGCATAACCCACTGAAGGCCTCTATGATATGTCAGATATAGTGATAGGTTGGGAATAAAGCTGTCTGCTTTTGTCTTTATTATGTAGTGTTGTATGCAAACAATAAAATAGGATCATGATGTTGTAACACAAATAAATAGCTCATATGATTGTTTATGTCAACCTCTACGATTAGCATTTATGATTTAACACTCTTATGTGTGGTGATTCTTTAAAGCATGAATCTTCTGAAATATCGTTACCACAGATATATTCATTTAAAGTAGGTAAAATGCTTCTGTGTATTTCCAATATTTGTTGTCTCCTTGCTTCAGGCATTCAGTGCTTGAAAGAATATTGAACTGATATAGAGTTGCACTCACTCAGGACTGGCTTCAGAAGCATGGTCCATTCGATGCCGTGGTGGATGGTGCAAATGTCGGCCTTATCACTCAACGAAATTTTAATTTCTCCCAGGTAGAACTACATTTTTTCCTGTCTTTTCTTGTGTTTTTTCTTTGGGTGTGTGGATGGGAGGGTAGAATTAGGGATGCAGTTTGATATGTGTATAGAAGTTAATCATATATATTTCAGCGGTAGAGAGGGTGACTCTCGGACTTACTTACCATCCCTATATTCGTTTATTTAGCATGACCAAGAAATATAACTTACTTTGCGTCCCTCTTTTTGTGTTATTTAGTATGACTAAGAAAGAGAGAGAGACACAGAATAACTGCCCCTTTCTGTTTAACTTCATAGAAATTGATGATGCTAATGTGGAATAGGTTGCAAAGTCTTCCAGTTTTAATTTATCAAAATGACCCTTATGCCCAGTTCCTTCCCACCCACCCACCTAGGCACCCACTGTCTAGTATGGATTCGTTATCTCTTAAGTAGTGACGGGAAGCGTACCAACTTCTCAAGATGATGTTCTAGCTAGGTATTGTATAAGAAAGAGTTCATATAGATTTCTTTCTATTGCAGCTTAGGTCTGTTGTCAATAAATTAAGGCAGATGAGTGAATCGAAGAAACTTCCATTGGTTATTTTGCACAAAAGCCGTACAACTGGTGGTCCTGCTCAACATCCTAATAACAAGAAGCTGTTAGAAAGCTGGAAGAAAGCAGGTGCACTTTATGCCACTCCACATGGTTCAAATGATGATTGGTAATACTCTTTACTTTGAGCTCTTACATGCAAATAGGAATTGGTGGCTAGTAGGTAGGTGAACTTATTTGTTTCCAAGAGGGTACAACTCATATATAATTAAATTTTATGGGAGAAAAAGTAATCTATTTAAACAGATGCCATCAACATAATAGTGATGTTGCTCAGCAAATTACTGAACATACCAAGAAACCCGTCTCCATAAATGGATATGATGGTATATCCGTATCTCTTTTCTTGACTAGTCTTGCTTTCTTGCAGTTACTGCTAGTGTTGCCCAGCTGTTTGAGTCCACATTTCTGCTGTCCTTTCCTGCAACTGTTAGCCTGTTCTTTTTCTGTGTCATTCCATTCAATTCTTTATTCTTTGTTGGGACCAAAGTCGCTCTTGCACACTTTTCTTCTTCTCTCTTTAAGTGTCTGGTTGTCATCAACATTTTTCCTCCATTCAAGATCAAATTGTTCTTCTCCACATTGCTCAATGCGCACAACTTTTTTTGTTGGGATCAACACACATAACTTCAACTCATCATGACATGAAGATCTGACATTGAACATGAAACAATTGCTTCACCTTTCCCTTCTTTGGATGAAATTCTGACTGGCGCCAGATGCAAATTCTAGGTTGTACCAGACACCCTTAATATATAACCAGTGTAGCTCTTGTTGGTTGGCTTTTGTTTTGTGAGTGCTTTCATATTATGGCTTTTCTGAGGCGTAAGCTTATTCTCCAGGTACTGGTTATATGCTGCTGTCAGTTCCAAAGGCTTGCTTTTGACAAATGATGAGATGAGAGACCATTTGTTCCAACTATTAGGCACTAGCTTTTTTCCCAGATGGAAGGAAAAACATCAGGTCTAATCTCTCTCTCGCACTATTCTGTAACATGTTAAACAATGAAAAGTTGGAATCCTTATTACAGTGCTATAGAGTCCTCTATTACAGTTCCTACTAAAGATAGAGTAAAAAAAAGGGTACTCTTTTTAGTGTATAGTAGCTTAATATCTGTATAAGTAGGTTATGCCAAAATAAAAAAGAAGAAGAAAGACAGTTATGCTGAGAAAAAGGTGAAGTCCTGTTACACTGTTCCTATTAAATTACCAAAATTCTTCATTATAGCTGGTTGTCAAAGAATGCAGAGATAGGTGCAGGGTTGTGAGAATTGAAGTTCTCCTAAAGAACTCGTCTGATGGAGCTGAGAGAGTTTATGTTATTGGGGTTAATGGTGATGCTTTTAAATAAGGCAATCAACAGTTAGATTCCATAACGGTCTTCTATTTACAAATTGCAGATCCGGATGACAGCTTCAAGAGATGACGGACTTAAGCTCCATATGCCACCACCCTATTCAATTGTTATTCAGGTGAGCCATCTCATGACTAATCCATATAATTTAAGCTCACCTTAGCTGTTATTCTAATGTCCAACTCTACTTTGTACGTGTGAAATTGAAATGTAGGAGTCAGAGCAGGGTTGTTGGCATATACCAACTCTTACTGGAGATGACCTTGAGATACCAAGACAGTGGGTATGTGCTACCAGGAAAAAAGCACTGCACTCTGTCTTTCGATGAACTGGGAATCAAATCATTAACATATAAATGTGATTTCTGGGACAGCATCAGTGAAGCAACCATGCATGAGTGCTTTTTTTCTTTGAAGAAGCTTATAATTTGAACTT</genome_strand>
        <mrna_strand>CGCTGAGATGGATAGTTCCGGAGTTTGCCGTTCATGTGGGGAAAAGCTTGTGTGCATTGACATTGATCCTAAGGAGACAGAGAACTTTGCTAATTCCTTGGCTGAATTGGCTTCTGAAAGAGAAGTCAAGGCTAATTTTGTGCAATTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGCTTCAGAAGCATGGTCCATTCGATGCCGTGGTGGATGGTGCAAATGTCGGCCTTATCACTCAACGAAATTTTAATTTCTCCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAGGTCTGTTGTCAATAAATTAAGGCAGATGAGTGAATCGAAGAAACTTCCATTGGTTATTTTGCACAAAAGCCGTACAACTGGTGGTCCTGCTCAACATCCTAATAACAAGAAGCTGTTAGAAAGCTGGAAGAAAGCAGGTGCACTTTATGCCACTCCACATGGTTCAAATGATGATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGGTTATATGCTGCTGTCAGTTCCAAAGGCTTGCTTTTGACAAATGATGAGATGAGAGACCATTTGTTCCAACTATTAGGCACTAGCTTTTTTCCCAGATGGAAGGAAAAACATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGGATGACAGCTTCAAGAGATGACGGACTTAAGCTCCATATGCCACCACCCTATTCAATTGTTATTCAG................................................................................................GAGTCAGAGCAGGGTTGTTGGCATATACCAACTCTTACTGGAGATGACCTTGAGATACCAAGACAGTGGGTATGTGCTACCAGGAAAAAAGCACTGCACTCTGTCTTTCGATGAACTGGGAATCAAATCATTAACATATAAATGTGATTTCTGGGACAGCATCAGTGAAGCAACCATGCATGAGTGCTTTTTTTCTTTGAAGAAGCTTATAATTTGAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E608986" ref_strand="+" ref_description="SGN-E608986 [24985]">
      <seq>cggagatggatagttccggagcttgtcgttcatgtggggaaaagcttgtgtgcattgacattgatcccaaggagacagagaactttgctaattctttggttaaattggcttgtgaaagagaagttaaggctaattttgtgcaatttcaggactggcttcagaagcatggtccattcgatgctgtggtggatggtgcaaatgtcggccttatcactcaacgaaattttaatttctctcagctcagatctgttgtcaataaattaaggcagatgagtgaatcgaagaaacttccattggttattttgcacaaaagtcgtacaactggtggtcctgctcaacatcctaataacaagaagttgttagaaagctggaagaaagcaggtgcactttatgccactccacatggttcaaatgatgattggtactggttatatgctgctgtaagttccaaaggcttgcttttgacaaatgatgagatgagagaccatttgttccaacttattagggcactaggctttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="101173" stop="97455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100873" g_stop="100725" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100724" i_stop="99364" i_length="1361">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.349" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99363" g_stop="99274" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="239" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99273" i_stop="98767" i_length="507">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.944" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98766" g_stop="98585" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="421" r_length="182" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98584" i_stop="97852" i_length="733">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.025" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97851" g_stop="97753" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="523" r_length="102" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E608986" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E608986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100873" e_stop="100725"/>
          <exon e_start="99363" e_stop="99274"/>
          <exon e_start="98766" e_stop="98585"/>
          <exon e_start="97851" e_stop="97753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGATGGATAGTTCCGGAGTTTGCCGTTCATGTGGGGAAAAGCTTGTGTGCATTGACATTGATCCTAAGGAGACAGAGAACTTTGCTAATTCCTTGGCTGAATTGGCTTCTGAAAGAGAAGTCAAGGCTAATTTTGTGCAATTTCAGGTCTGTTGATTTTCTTCTGGTGCATTTTATAAATTACTTGTTACATAAAGTGTTACCCTTCTTCTTGGGCTAAATGGTAGGAATTATATGTATTTCTCCTGTTGGTATTAAGATTTTTGCGTCCAGTTAACTGAAGTATTGATTAATTGTTTGAATACTTGCCAGGATATCCTACATGGTTCATTGTATTAGTGTTTTTAGAAGTCTGTTTTTGTTTTGATGAAGTAATTGACTTAATTAATGACATTAACAAGATGCGAAATAATTACAAAATATAGAAGCAATGCTCATGATAGTGACTGAGGGCTCACATGATATATGCTTTGATGAACTCCACGGATTCTTGGTAGAAAGCCATTGTGTATTCATCAGGACCAGGCCTTGTCTAGTGTACATGACTGTATAGCTGCTAACACTTTTAGAAGTTTCAAGTAAGTCTAACACTTAATTGCATTAAGCACCTTCGACTCATGGATGGCTTTGCCATAAAGTTTAGATATGCATTCCTGCTGCTGCCATCCCAAAGAGCAAAGCATTGAAGTTAAATCAACCCCATCAAATAAATATAAAAGAAATAAAAGGGTACTTTGTCTAGATATATTATACTTGGAGATTATAGGTTGGAATTCCCTTATAGGATTTTGATGAAGGCCTCTATGATTTCTTTTTGATGACTAATAAGATTTTATAGCACGTTTGGGCAAAAAACCATGTACAACTAGTATACCAAGATAAGTAGAAAATCTATAACAAAGTATGATTTTCTATGAACGTCACCCACTAATCTATACATAAAGGAAATTCGTGAATGCACTAAAACGAAATTAGGGCTAAGAGGCTATTCATCAACTGTGCAAAATCACTACCCTCAAAAGCTCTCCTATTTCCTTCTCTCCAAACAATCCACTAAGTGCGAGTGGAGCAATCTTCCAGGCCCTACTTCCTCTCCTCCACTTTGCACAGTTCTAGGTAACTTCAGTTCTTACGTGATGCCTGGCATAACCCACTGAAGGCCTCTATGATATGTCAGATATAGTGATAGGTTGGGAATAAAGCTGTCTGCTTTTGTCTTTATTATGTAGTGTTGTATGCAAACAATAAAATAGGATCATGATGTTGTAACACAAATAAATAGCTCATATGATTGTTTATGTCAACCTCTACGATTAGCATTTATGATTTAACACTCTTATGTGTGGTGATTCTTTAAAGCATGAATCTTCTGAAATATCGTTACCACAGATATATTCATTTAAAGTAGGTAAAATGCTTCTGTGTATTTCCAATATTTGTTGTCTCCTTGCTTCAGGCATTCAGTGCTTGAAAGAATATTGAACTGATATAGAGTTGCACTCACTCAGGACTGGCTTCAGAAGCATGGTCCATTCGATGCCGTGGTGGATGGTGCAAATGTCGGCCTTATCACTCAACGAAATTTTAATTTCTCCCAGGTAGAACTACATTTTTTCCTGTCTTTTCTTGTGTTTTTTCTTTGGGTGTGTGGATGGGAGGGTAGAATTAGGGATGCAGTTTGATATGTGTATAGAAGTTAATCATATATATTTCAGCGGTAGAGAGGGTGACTCTCGGACTTACTTACCATCCCTATATTCGTTTATTTAGCATGACCAAGAAATATAACTTACTTTGCGTCCCTCTTTTTGTGTTATTTAGTATGACTAAGAAAGAGAGAGAGACACAGAATAACTGCCCCTTTCTGTTTAACTTCATAGAAATTGATGATGCTAATGTGGAATAGGTTGCAAAGTCTTCCAGTTTTAATTTATCAAAATGACCCTTATGCCCAGTTCCTTCCCACCCACCCACCTAGGCACCCACTGTCTAGTATGGATTCGTTATCTCTTAAGTAGTGACGGGAAGCGTACCAACTTCTCAAGATGATGTTCTAGCTAGGTATTGTATAAGAAAGAGTTCATATAGATTTCTTTCTATTGCAGCTTAGGTCTGTTGTCAATAAATTAAGGCAGATGAGTGAATCGAAGAAACTTCCATTGGTTATTTTGCACAAAAGCCGTACAACTGGTGGTCCTGCTCAACATCCTAATAACAAGAAGCTGTTAGAAAGCTGGAAGAAAGCAGGTGCACTTTATGCCACTCCACATGGTTCAAATGATGATTGGTAATACTCTTTACTTTGAGCTCTTACATGCAAATAGGAATTGGTGGCTAGTAGGTAGGTGAACTTATTTGTTTCCAAGAGGGTACAACTCATATATAATTAAATTTTATGGGAGAAAAAGTAATCTATTTAAACAGATGCCATCAACATAATAGTGATGTTGCTCAGCAAATTACTGAACATACCAAGAAACCCGTCTCCATAAATGGATATGATGGTATATCCGTATCTCTTTTCTTGACTAGTCTTGCTTTCTTGCAGTTACTGCTAGTGTTGCCCAGCTGTTTGAGTCCACATTTCTGCTGTCCTTTCCTGCAACTGTTAGCCTGTTCTTTTTCTGTGTCATTCCATTCAATTCTTTATTCTTTGTTGGGACCAAAGTCGCTCTTGCACACTTTTCTTCTTCTCTCTTTAAGTGTCTGGTTGTCATCAACATTTTTCCTCCATTCAAGATCAAATTGTTCTTCTCCACATTGCTCAATGCGCACAACTTTTTTTGTTGGGATCAACACACATAACTTCAACTCATCATGACATGAAGATCTGACATTGAACATGAAACAATTGCTTCACCTTTCCCTTCTTTGGATGAAATTCTGACTGGCGCCAGATGCAAATTCTAGGTTGTACCAGACACCCTTAATATATAACCAGTGTAGCTCTTGTTGGTTGGCTTTTGTTTTGTGAGTGCTTTCATATTATGGCTTTTCTGAGGCGTAAGCTTATTCTCCAGGTACTGGTTATATGCTGCTGTCAGTTCCAAAGGCTTGCTTTTGACAAATGATGAGATGAGAGACCATTTGTTCCAAC-TATTA-GGCACTA-GCTTTTTTCC</genome_strand>
        <mrna_strand>CGGAGATGGATAGTTCCGGAGCTTGTCGTTCATGTGGGGAAAAGCTTGTGTGCATTGACATTGATCCCAAGGAGACAGAGAACTTTGCTAATTCTTTGGTTAAATTGGCTTGTGAAAGAGAAGTTAAGGCTAATTTTGTGCAATTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGCTTCAGAAGCATGGTCCATTCGATGCTGTGGTGGATGGTGCAAATGTCGGCCTTATCACTCAACGAAATTTTAATTTCTCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGATCTGTTGTCAATAAATTAAGGCAGATGAGTGAATCGAAGAAACTTCCATTGGTTATTTTGCACAAAAGTCGTACAACTGGTGGTCCTGCTCAACATCCTAATAACAAGAAGTTGTTAGAAAGCTGGAAGAAAGCAGGTGCACTTTATGCCACTCCACATGGTTCAAATGATGATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGGTTATATGCTGCTGTAAGTTCCAAAGGCTTGCTTTTGACAAATGATGAGATGAGAGACCATTTGTTCCAACTTATTAGGGCACTAGGCTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330065" ref_strand="+" ref_description="SGN-E330065 [cTOD-5-O19]">
      <seq>ggcagttgctaagcaagacccagaaatggcttttgatttagtgaagaaaatgaagagttttggtgttcctcctaagttaagatcatatggcccagcgttgtttgggttttgtgaaaagggaatggctgataaggcttatgaggttgatgtacatatgggggaatcaggggttgtggctgaggaagcagagctttctgctctgttgaaagttagttctttttctaaaaaggctgataaagtatatgaaatgatgcatagattaagggcaagtgtaaggcaggtgtgtgaagagactgttggtgtagtagaggattggtttaattctgaatatgctgctgaggttgggctgcaggattgggatgctcggaaagtgaaggaaggtgttgtgaaaggaggaggtggttggcatggacaagggtggttgggaaaggggaattggactgtantgagggcggagatggatagttccggagtttgccgttcatgtggggaaaagcttgtgtgcattgacattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="101625" stop="100510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101325" g_stop="100810" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E330065" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101325" e_stop="100810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAGTTGCTAAGCAAGACCCAGAAATGGCTTTTGATTTAGTGAAGAAAATGAAGAGTTTTGGTGTTCCTCCTAAGTTAAGATCATATGGCCCAGCGTTGTTTGGGTTTTGTGAAAAGGGAATGGCTGATAAGGCTTATGAGGTTGATGTACATATGGGGGAATCAGGGGTTGTGGCTGAGGAAGCAGAGCTTTCTGCTCTGTTGAAAGTTAGTTCTTTTTCTAAAAAGGCTGATAAAGTATATGAAATGATGCATAGATTAAGGGCAAGTGTAAGGCAGGTGTGTGAAGAGACTGTTGGTGTAGTAGAGGATTGGTTTAATTCTGAATATGCTGCTGAGGTTGGGCTGCAGGATTGGGATGCTCGGAAAGTGAAGGAAGGTGTTGTGAAAGGAGGAGGTGGTTGGCATGGACAAGGGTGGTTGGGAAAGGGGAATTGGACTGTAGTGAGGGCGGAGATGGATAGTTCCGGAGTTTGCCGTTCATGTGGGGAAAAGCTTGTGTGCATTGACATTGA</genome_strand>
        <mrna_strand>GGCAGTTGCTAAGCAAGACCCAGAAATGGCTTTTGATTTAGTGAAGAAAATGAAGAGTTTTGGTGTTCCTCCTAAGTTAAGATCATATGGCCCAGCGTTGTTTGGGTTTTGTGAAAAGGGAATGGCTGATAAGGCTTATGAGGTTGATGTACATATGGGGGAATCAGGGGTTGTGGCTGAGGAAGCAGAGCTTTCTGCTCTGTTGAAAGTTAGTTCTTTTTCTAAAAAGGCTGATAAAGTATATGAAATGATGCATAGATTAAGGGCAAGTGTAAGGCAGGTGTGTGAAGAGACTGTTGGTGTAGTAGAGGATTGGTTTAATTCTGAATATGCTGCTGAGGTTGGGCTGCAGGATTGGGATGCTCGGAAAGTGAAGGAAGGTGTTGTGAAAGGAGGAGGTGGTTGGCATGGACAAGGGTGGTTGGGAAAGGGGAATTGGACTGTANTGAGGGCGGAGATGGATAGTTCCGGAGTTTGCCGTTCATGTGGGGAAAAGCTTGTGTGCATTGACATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212763" ref_strand="+" ref_description="SGN-E212763 [cLEC-73-J6]">
      <seq>gatttacaggaagcaattcgactttatgaagaagctaagttaaacaatattacccttaatgttcatcattataatgtgttgctttatctttgttcttctggttcgggtactgagggatgtgggattgagaaaggatttctgatttttaaacagatgggggttaatggtgttgctccgaatgaggcgacgtttactagtgctgctagattggcagttgctaagcaagacccagaaatggcttttgatttagtgaagaaaatgaagagttttggtgttcctcctaagttaagatcatatggcccaccgttgtttgggttttgtgaaaagggaatggctgataaggcttatgaggttgatgtacatatgggggaatcacgggttgtggctgaagaagcaaaactttctgctctgttgaaagttagttctttttctaaaaaggctgataaagtatatgaaatgatgcatagattaagggcaagtgtaaggcacgtgtgtgaagagactgttggtgtagtaaaagattggttttattctgaatatgctgctgaagttgggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="101834" stop="100677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101534" g_stop="100977" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E212763" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101534" e_stop="100977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTACAGGAAGCAATTCGACTTTATGAAGAAGCTAAGTTAAACAATATTACCCTTAATGTTCATCATTATAATGTGTTGCTTTATCTTTGTTCTTCTGGTTCGGGTACTGAGGGATGTGGGATTGAGAAAGGATTTCTGATTTTTAAACAGATGGGGGTTAATGGTGTTGCTCCGAATGAGGCGACGTTTACTAGTGCTGCTAGATTGGCAGTTGCTAAGCAAGACCCAGAAATGGCTTTTGATTTAGTGAAGAAAATGAAGAGTTTTGGTGTTCCTCCTAAGTTAAGATCATATGGCCCAGCGTTGTTTGGGTTTTGTGAAAAGGGAATGGCTGATAAGGCTTATGAGGTTGATGTACATATGGGGGAATCAGGGGTTGTGGCTGAGGAAGCAGAGCTTTCTGCTCTGTTGAAAGTTAGTTCTTTTTCTAAAAAGGCTGATAAAGTATATGAAATGATGCATAGATTAAGGGCAAGTGTAAGGCAGGTGTGTGAAGAGACTGTTGGTGTAGTAGAGGATTGGTTTAATTCTGAATATGCTGCTGAGGTTGGGCTG</genome_strand>
        <mrna_strand>GATTTACAGGAAGCAATTCGACTTTATGAAGAAGCTAAGTTAAACAATATTACCCTTAATGTTCATCATTATAATGTGTTGCTTTATCTTTGTTCTTCTGGTTCGGGTACTGAGGGATGTGGGATTGAGAAAGGATTTCTGATTTTTAAACAGATGGGGGTTAATGGTGTTGCTCCGAATGAGGCGACGTTTACTAGTGCTGCTAGATTGGCAGTTGCTAAGCAAGACCCAGAAATGGCTTTTGATTTAGTGAAGAAAATGAAGAGTTTTGGTGTTCCTCCTAAGTTAAGATCATATGGCCCACCGTTGTTTGGGTTTTGTGAAAAGGGAATGGCTGATAAGGCTTATGAGGTTGATGTACATATGGGGGAATCACGGGTTGTGGCTGAAGAAGCAAAACTTTCTGCTCTGTTGAAAGTTAGTTCTTTTTCTAAAAAGGCTGATAAAGTATATGAAATGATGCATAGATTAAGGGCAAGTGTAAGGCACGTGTGTGAAGAGACTGTTGGTGTAGTAAAAGATTGGTTTTATTCTGAATATGCTGCTGAAGTTGGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706093" ref_strand="+" ref_description="SGN-E706093 [FA29AA02]">
      <seq>ttccataccaccgaggtaaaaggccaatccccattaaagcagagtcatgctcgttcgtcgtatgggttatatctcaccttctctttctataaaaacctcacctttcttctctattctcacaaaaaacccttttccatttcatcatcttcatcctatccaattcttcaaaccaattcacaccaaatccccacaaacccatctcttttccatgaaccaaaaaccccatttcaccacttccgctgcttttctccaagaacccacaaacacaaaaacattgtctaacaggtcggccaagaaagctcgccgtgacgcccctgagagtgtgctgcgtcatcagttagaccagtgttctaaacggggtgatttacaggaagcaattcgactttatgaagaagctaagttaaacaatattacccttaatgttcatcattataatgtgttgctttatctttgttcttctggttcgggtactgagggatgtgggattgagaaaggatttctgatttttaaacagatgggggttaatggtgttgctccgaatgaggcgacgtttactagtgctgctagattggcagttgctaagcaagacccagaaatggcttttgatttagtgaagaaaatgaagagttttggtgttcctcctaagttaagatcatatggcccagcgttgtttgggttttgtgaaaagggaatggctgataaggcttatgaggttgatgtacatatgggggaatcaggggttgtggctgaggaaccaaagctttctgctctgttgaaagttagttctttttctaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102195" stop="100800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101895" g_stop="101100" g_length="796"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="796" r_length="796" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E706093" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101895" e_stop="101100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCATACCACCGAGGTAAAAGGCCAATCCCCATTAAAGCAGAGTCATGCTCGTTCGTCGTATGGGTTATATCTCACCTTCTCTTTCTATAAAAACCTCACCTTTCTTCTCTATTCTCACAAAAAACCCTTTTCCATTTCATCATCTTCATCCTATCCAATTCTTCAAACCAATTCACACCAAATCCCCACAAACCCATCTCTTTTCCATGAACCAAAAACCCCATTTCACCACTTCCGCTGCTTTTCTCCAAGAACCCACAAACACAAAAACATTGTCTAACAGGTCGGCCAAGAAAGCTCGCCGTGACGCCCCTGAGAGTGTGCTGCGTCATCAGTTAGACCAGTGTTCTAAACGGGGTGATTTACAGGAAGCAATTCGACTTTATGAAGAAGCTAAGTTAAACAATATTACCCTTAATGTTCATCATTATAATGTGTTGCTTTATCTTTGTTCTTCTGGTTCGGGTACTGAGGGATGTGGGATTGAGAAAGGATTTCTGATTTTTAAACAGATGGGGGTTAATGGTGTTGCTCCGAATGAGGCGACGTTTACTAGTGCTGCTAGATTGGCAGTTGCTAAGCAAGACCCAGAAATGGCTTTTGATTTAGTGAAGAAAATGAAGAGTTTTGGTGTTCCTCCTAAGTTAAGATCATATGGCCCAGCGTTGTTTGGGTTTTGTGAAAAGGGAATGGCTGATAAGGCTTATGAGGTTGATGTACATATGGGGGAATCAGGGGTTGTGGCTGAGGAAGCAGAGCTTTCTGCTCTGTTGAAAGTTAGTTCTTTTTCTAAA</genome_strand>
        <mrna_strand>TTCCATACCACCGAGGTAAAAGGCCAATCCCCATTAAAGCAGAGTCATGCTCGTTCGTCGTATGGGTTATATCTCACCTTCTCTTTCTATAAAAACCTCACCTTTCTTCTCTATTCTCACAAAAAACCCTTTTCCATTTCATCATCTTCATCCTATCCAATTCTTCAAACCAATTCACACCAAATCCCCACAAACCCATCTCTTTTCCATGAACCAAAAACCCCATTTCACCACTTCCGCTGCTTTTCTCCAAGAACCCACAAACACAAAAACATTGTCTAACAGGTCGGCCAAGAAAGCTCGCCGTGACGCCCCTGAGAGTGTGCTGCGTCATCAGTTAGACCAGTGTTCTAAACGGGGTGATTTACAGGAAGCAATTCGACTTTATGAAGAAGCTAAGTTAAACAATATTACCCTTAATGTTCATCATTATAATGTGTTGCTTTATCTTTGTTCTTCTGGTTCGGGTACTGAGGGATGTGGGATTGAGAAAGGATTTCTGATTTTTAAACAGATGGGGGTTAATGGTGTTGCTCCGAATGAGGCGACGTTTACTAGTGCTGCTAGATTGGCAGTTGCTAAGCAAGACCCAGAAATGGCTTTTGATTTAGTGAAGAAAATGAAGAGTTTTGGTGTTCCTCCTAAGTTAAGATCATATGGCCCAGCGTTGTTTGGGTTTTGTGAAAAGGGAATGGCTGATAAGGCTTATGAGGTTGATGTACATATGGGGGAATCAGGGGTTGTGGCTGAGGAACCAAAGCTTTCTGCTCTGTTGAAAGTTAGTTCTTTTTCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700469" ref_strand="+" ref_description="SGN-E700469 [FA13AH06]">
      <seq>gccatttggccaatccccattaaagcagagtcatgctcgttcgtcgtatgggatatatctcaccttctctttctataaaaacctcacctttcttctctattctcacaaaaaacccttttccatttcatcatcttcatcctatccaattcttcaaaccaattcacaccaaatccccacaaacccatctcttttccatgaaccaaaaaccccatttcaccacttccgctgcttttctccaagaacccacaaacacaaaaacattgtctaacaggtcggccaagaaagctcgccgtgacgcccctgagagtgtgctgcgtcatcagttagaccagtgttctaaacggggtgatttacaggaagcaattcgactttatgaagaagctaagttaaacaatattacccttaatgttcatcattataatgtgttgctttatctttgttcttctggttcgggtactgagggatgtgggattgagaaaggatttctgatttttaaacagatgggggttaatggtgttgctccgaatgaggcgacgtttactagtgctgctagattggcagttgctaagcaagacccagaaatggcttttgatttagtgaagaaaatgaagagttttggtgttcctcctaagttaaagatcatatggcccagcgttgtttgggttttgtgaaaagggaatggctgataaggcttatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102174" stop="100885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101881" g_stop="101185" g_length="697"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E700469" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101881" e_stop="101185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAAAAGGCCAATCCCCATTAAAGCAGAGTCATGCTCGTTCGTCGTATGGGTTATATCTCACCTTCTCTTTCTATAAAAACCTCACCTTTCTTCTCTATTCTCACAAAAAACCCTTTTCCATTTCATCATCTTCATCCTATCCAATTCTTCAAACCAATTCACACCAAATCCCCACAAACCCATCTCTTTTCCATGAACCAAAAACCCCATTTCACCACTTCCGCTGCTTTTCTCCAAGAACCCACAAACACAAAAACATTGTCTAACAGGTCGGCCAAGAAAGCTCGCCGTGACGCCCCTGAGAGTGTGCTGCGTCATCAGTTAGACCAGTGTTCTAAACGGGGTGATTTACAGGAAGCAATTCGACTTTATGAAGAAGCTAAGTTAAACAATATTACCCTTAATGTTCATCATTATAATGTGTTGCTTTATCTTTGTTCTTCTGGTTCGGGTACTGAGGGATGTGGGATTGAGAAAGGATTTCTGATTTTTAAACAGATGGGGGTTAATGGTGTTGCTCCGAATGAGGCGACGTTTACTAGTGCTGCTAGATTGGCAGTTGCTAAGCAAGACCCAGAAATGGCTTTTGATTTAGTGAAGAAAATGAAGAGTTTTGGTGTTCCTCCTAAGTT-AAGATCATATGGCCCAGCGTTGTTTGGGTTTTGTGAAAAGGGAATGGCTGATAAGGCTTATGA</genome_strand>
        <mrna_strand>GCCATTTGGCCAATCCCCATTAAAGCAGAGTCATGCTCGTTCGTCGTATGGGATATATCTCACCTTCTCTTTCTATAAAAACCTCACCTTTCTTCTCTATTCTCACAAAAAACCCTTTTCCATTTCATCATCTTCATCCTATCCAATTCTTCAAACCAATTCACACCAAATCCCCACAAACCCATCTCTTTTCCATGAACCAAAAACCCCATTTCACCACTTCCGCTGCTTTTCTCCAAGAACCCACAAACACAAAAACATTGTCTAACAGGTCGGCCAAGAAAGCTCGCCGTGACGCCCCTGAGAGTGTGCTGCGTCATCAGTTAGACCAGTGTTCTAAACGGGGTGATTTACAGGAAGCAATTCGACTTTATGAAGAAGCTAAGTTAAACAATATTACCCTTAATGTTCATCATTATAATGTGTTGCTTTATCTTTGTTCTTCTGGTTCGGGTACTGAGGGATGTGGGATTGAGAAAGGATTTCTGATTTTTAAACAGATGGGGGTTAATGGTGTTGCTCCGAATGAGGCGACGTTTACTAGTGCTGCTAGATTGGCAGTTGCTAAGCAAGACCCAGAAATGGCTTTTGATTTAGTGAAGAAAATGAAGAGTTTTGGTGTTCCTCCTAAGTTAAAGATCATATGGCCCAGCGTTGTTTGGGTTTTGTGAAAAGGGAATGGCTGATAAGGCTTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450329" ref_strand="+" ref_description="SGN-E450329 [cSTS-9-E11]">
      <seq>gttatttctcaccttcactttctataaaaacctcacctttcttctctcttctcacaaaaatcccttttccatttcatcatctttgtcctatccacttcttcaaaccaattcacaccaaatccccacaaacccatctcttttccatgaaccgaaaaacccatttcaccacttccgctgctttccttcaagaacccacaaacacaaaaaccttgtctaacaggtcggccaagaaagcccgccgtgacgcccctgagagtgtgctacgtcatcagttagaccagtgttataaacggggtgatttacaggaagcaattcgactctatgaagaagctaagttaaacaatattacccttaatgttcatcattataatgtgttgctttatctttgttcttctggttcgggtacggagggatgtgggattgagaaaggatttcagatttttaaacagatgggtgttaatggtgttgctccgaatgaggcgacttttactagtgctgctagattggcagttgctaagcaagacccagaaatggcttttgatttagtgaagaaaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102130" stop="100973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101830" g_stop="101273" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E450329" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E450329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101830" e_stop="101273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATATCTCACCTTCTCTTTCTATAAAAACCTCACCTTTCTTCTCTATTCTCACAAAAAACCCTTTTCCATTTCATCATCTTCATCCTATCCAATTCTTCAAACCAATTCACACCAAATCCCCACAAACCCATCTCTTTTCCATGAACCAAAAACCCCATTTCACCACTTCCGCTGCTTTTCTCCAAGAACCCACAAACACAAAAACATTGTCTAACAGGTCGGCCAAGAAAGCTCGCCGTGACGCCCCTGAGAGTGTGCTGCGTCATCAGTTAGACCAGTGTTCTAAACGGGGTGATTTACAGGAAGCAATTCGACTTTATGAAGAAGCTAAGTTAAACAATATTACCCTTAATGTTCATCATTATAATGTGTTGCTTTATCTTTGTTCTTCTGGTTCGGGTACTGAGGGATGTGGGATTGAGAAAGGATTTCTGATTTTTAAACAGATGGGGGTTAATGGTGTTGCTCCGAATGAGGCGACGTTTACTAGTGCTGCTAGATTGGCAGTTGCTAAGCAAGACCCAGAAATGGCTTTTGATTTAGTGAAGAAAATGA</genome_strand>
        <mrna_strand>GTTATTTCTCACCTTCACTTTCTATAAAAACCTCACCTTTCTTCTCTCTTCTCACAAAAATCCCTTTTCCATTTCATCATCTTTGTCCTATCCACTTCTTCAAACCAATTCACACCAAATCCCCACAAACCCATCTCTTTTCCATGAACCGAAAAACCCATTTCACCACTTCCGCTGCTTTCCTTCAAGAACCCACAAACACAAAAACCTTGTCTAACAGGTCGGCCAAGAAAGCCCGCCGTGACGCCCCTGAGAGTGTGCTACGTCATCAGTTAGACCAGTGTTATAAACGGGGTGATTTACAGGAAGCAATTCGACTCTATGAAGAAGCTAAGTTAAACAATATTACCCTTAATGTTCATCATTATAATGTGTTGCTTTATCTTTGTTCTTCTGGTTCGGGTACGGAGGGATGTGGGATTGAGAAAGGATTTCAGATTTTTAAACAGATGGGTGTTAATGGTGTTGCTCCGAATGAGGCGACTTTTACTAGTGCTGCTAGATTGGCAGTTGCTAAGCAAGACCCAGAAATGGCTTTTGATTTAGTGAAGAAAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E423590" ref_strand="+" ref_description="SGN-E423590 [STM-42-C6]">
      <seq>tcagcttccattccaccgatgtaaaagaccaatcccccattaaagcacagtcatgctcgttcgtcgtatgggttatttctcaccttcactttctataaaaacctcacctttcttctctcttctcacaaaaatcccttttccatttcatcatctttgtcctatccacttcttcaaaccaattcacaccaaatccccacaaacccatctcttttccatgaaccgaaaaacccatttcaccacttccgctgctttccttcaagaacccacaaacacaaaaaccttgtctaacaggtcggccaagaaagcccgccgtgacgcccctgagagtgtgctacgtcatcagttagaccagtgttctaaacggggtgatttacaggaagcaattcgactctatgaagaagctaagttaaacaatattacccttaatgttcatcattataatgtgttgctttatctttgttcttctggttcgggtacggagggatgtgggattgagaaaggatttcagatttttaaacagatggggtgttaatgggtgtgctccgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102200" stop="101055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101900" g_stop="101355" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E423590" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E423590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101900" e_stop="101355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCTTCCATACCACCGAGGTAAAAGGCCAAT-CCCCATTAAAGCAGAGTCATGCTCGTTCGTCGTATGGGTTATATCTCACCTTCTCTTTCTATAAAAACCTCACCTTTCTTCTCTATTCTCACAAAAAACCCTTTTCCATTTCATCATCTTCATCCTATCCAATTCTTCAAACCAATTCACACCAAATCCCCACAAACCCATCTCTTTTCCATGAACCAAAAACCCCATTTCACCACTTCCGCTGCTTTTCTCCAAGAACCCACAAACACAAAAACATTGTCTAACAGGTCGGCCAAGAAAGCTCGCCGTGACGCCCCTGAGAGTGTGCTGCGTCATCAGTTAGACCAGTGTTCTAAACGGGGTGATTTACAGGAAGCAATTCGACTTTATGAAGAAGCTAAGTTAAACAATATTACCCTTAATGTTCATCATTATAATGTGTTGCTTTATCTTTGTTCTTCTGGTTCGGGTACTGAGGGATGTGGGATTGAGAAAGGATTTCTGATTTTTAAACAGATGGGG-GTTAATGGTGTTGCTCCGAAT</genome_strand>
        <mrna_strand>TCAGCTTCCATTCCACCGATGTAAAAGACCAATCCCCCATTAAAGCACAGTCATGCTCGTTCGTCGTATGGGTTATTTCTCACCTTCACTTTCTATAAAAACCTCACCTTTCTTCTCTCTTCTCACAAAAATCCCTTTTCCATTTCATCATCTTTGTCCTATCCACTTCTTCAAACCAATTCACACCAAATCCCCACAAACCCATCTCTTTTCCATGAACCGAAAAACCCATTTCACCACTTCCGCTGCTTTCCTTCAAGAACCCACAAACACAAAAACCTTGTCTAACAGGTCGGCCAAGAAAGCCCGCCGTGACGCCCCTGAGAGTGTGCTACGTCATCAGTTAGACCAGTGTTCTAAACGGGGTGATTTACAGGAAGCAATTCGACTCTATGAAGAAGCTAAGTTAAACAATATTACCCTTAATGTTCATCATTATAATGTGTTGCTTTATCTTTGTTCTTCTGGTTCGGGTACGGAGGGATGTGGGATTGAGAAAGGATTTCAGATTTTTAAACAGATGGGGTGTTAATGGGTGTGCTCCGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450790" ref_strand="+" ref_description="SGN-E450790 [cSTS-10-O2]">
      <seq>tcagcttccattccaccgatgtaaaagaccaatcccccattaaagcacagtcatgctcgttcgtcgtatgggttatttctcaccttcactttctataaaaacctcacctttcttctctcttctcacaaaaatcccttttccatttcatcatctttgtcctatccacttcttcaaaccaattcacaccaaatccccacaaacccatctcttttccatgaaccgaaaaacccatttcaccacttccgctgctttccttcaagaacccacaaacacaaaaaccttgtctaacaggtcggccaagaaagcccgccgtgacgcccctgagagtgtgctacgtcatcagttagaccagtgttctaaacggggtgatttacaggaagcaattcgactctatgaagaagctaagttaaacaatattaccctttatgttcatcattataaatgtgttgctttatctttgttcttctggttcgggtacggagggatgtgggattgagaaaggatttcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102200" stop="101094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101900" g_stop="101394" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E450790" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E450790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101900" e_stop="101394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCTTCCATACCACCGAGGTAAAAGGCCAAT-CCCCATTAAAGCAGAGTCATGCTCGTTCGTCGTATGGGTTATATCTCACCTTCTCTTTCTATAAAAACCTCACCTTTCTTCTCTATTCTCACAAAAAACCCTTTTCCATTTCATCATCTTCATCCTATCCAATTCTTCAAACCAATTCACACCAAATCCCCACAAACCCATCTCTTTTCCATGAACCAAAAACCCCATTTCACCACTTCCGCTGCTTTTCTCCAAGAACCCACAAACACAAAAACATTGTCTAACAGGTCGGCCAAGAAAGCTCGCCGTGACGCCCCTGAGAGTGTGCTGCGTCATCAGTTAGACCAGTGTTCTAAACGGGGTGATTTACAGGAAGCAATTCGACTTTATGAAGAAGCTAAGTTAAACAATATTACCCTTAATGTTCATCATTAT-AATGTGTTGCTTTATCTTTGTTCTTCTGGTTCGGGTACTGAGGGATGTGGGATTGAGAAAGGATTTCTG</genome_strand>
        <mrna_strand>TCAGCTTCCATTCCACCGATGTAAAAGACCAATCCCCCATTAAAGCACAGTCATGCTCGTTCGTCGTATGGGTTATTTCTCACCTTCACTTTCTATAAAAACCTCACCTTTCTTCTCTCTTCTCACAAAAATCCCTTTTCCATTTCATCATCTTTGTCCTATCCACTTCTTCAAACCAATTCACACCAAATCCCCACAAACCCATCTCTTTTCCATGAACCGAAAAACCCATTTCACCACTTCCGCTGCTTTCCTTCAAGAACCCACAAACACAAAAACCTTGTCTAACAGGTCGGCCAAGAAAGCCCGCCGTGACGCCCCTGAGAGTGTGCTACGTCATCAGTTAGACCAGTGTTCTAAACGGGGTGATTTACAGGAAGCAATTCGACTCTATGAAGAAGCTAAGTTAAACAATATTACCCTTTATGTTCATCATTATAAATGTGTTGCTTTATCTTTGTTCTTCTGGTTCGGGTACGGAGGGATGTGGGATTGAGAAAGGATTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282303" ref_strand="+" ref_description="SGN-E282303 [cLES-4-P16]">
      <seq>ttttgttctcggacaattcatggtcataaaccccataaaaacctcaatccgccattatcactctgtggagcaaatgcaatgaaaactctaaactccacccacatccgccgctccattatctctctaacctctcttgtctcacatctcactaccaaaaaccctacttttaagctcttctccactcaatcatggctgaaatcaacgcgaggaaaacccctaatgaaattgcctaagctgaattacccacccaaacaaccaacacccctctttttaccccctccttcaacccaccaacccgaaacccctaattactgcccaactgatttcaccaccctatctgagattctacgtgaccccaccatcccacctggccctgctcttgaaaatgccttggatagagctgggatcgaagtaaatgagtgtatgttttcttcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="+" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103338" stop="104373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103638" g_stop="104073" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="+" ref_id="SGN-E282303" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103638" e_stop="104073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTACTCGGACAATTCATGGTCATAAACCCCATAAAAACCTCAATCCGCCATTATCACTCTGTGGAGCAAATGCAATGAAAACTCTAAACTCCACCCACATCCGCCGCTCCATTATCTCTCTAACCTCTCTTGTCTCACATCTCACTACCAAAAACCCTACTTTTAAGCTCTTCTCCACTCAATCATGGCTGAAATCAACGCGAGGAAAACCCCTAATGAAATTGCCTAAGCTGAATTACCCACCCAAACAACCAACACCCCTCTTTTCACCCCCTCCTTCAACCCACCAACCCGAAACCCCTAATTACTGCCCAACTGATTTCACCACCCTATCTGAGATTCTACGTGACCCCACCATCCCACCTGGCCCTGCTCTTGAAAATGCCTTGGATAGAGCTGGGATCGAAGTAAATGAGTGTATG-TTTCTTCAAC</genome_strand>
        <mrna_strand>TTTTGTTCTCGGACAATTCATGGTCATAAACCCCATAAAAACCTCAATCCGCCATTATCACTCTGTGGAGCAAATGCAATGAAAACTCTAAACTCCACCCACATCCGCCGCTCCATTATCTCTCTAACCTCTCTTGTCTCACATCTCACTACCAAAAACCCTACTTTTAAGCTCTTCTCCACTCAATCATGGCTGAAATCAACGCGAGGAAAACCCCTAATGAAATTGCCTAAGCTGAATTACCCACCCAAACAACCAACACCCCTCTTTTTACCCCCTCCTTCAACCCACCAACCCGAAACCCCTAATTACTGCCCAACTGATTTCACCACCCTATCTGAGATTCTACGTGACCCCACCATCCCACCTGGCCCTGCTCTTGAAAATGCCTTGGATAGAGCTGGGATCGAAGTAAATGAGTGTATGTTTTCTTCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689161" ref_strand="+" ref_description="SGN-E689161 [t3_tus_80_F23]">
      <seq>ctatggaaataagccgtttcttgaggcaccatgctcgaacaattcaagggaaatctcagctcttcataaactcttatgcaaaagctcttgagattatcccccgtcagctatgtgacaatgctggttttgatgcaactgatgtgctgaacaagctcagacaaaaacacgctcttccgtctggtgagggtgcaccttatggagttgacattaatactggtggcatagctgattcatttgccaactttgtttgggagccagcagtcgtgaagataaatgccatcaatgcagccactgaagctgcatgcctcattctgagtgtagatgagacagtgaagaatcctaagtctgagagtgcacaaggagatgctgctgcaagtgccatgggtggtggtagagggcgtggacgtggacgtggaatgagacggcgatngatttcataagttcttttgcagattttgctatgatttttatgtagtgtttgcttttttccccatgtttgctcctcccttctgtagttctagttgtctccctcgatcaaaatgttcaaatttggacatcgattctcatatagcaaccgagaaacaatcaaaacagagctgtgttaagttcaggcaacatccagtaaactaaattatttttgttgctgtcnnanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaannaccggggggggggggcccccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="111632" stop="7750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111416" g_stop="111415" g_length="2"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2" r_length="2" r_score="0.500"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111414" i_stop="111333" i_length="82">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111332" g_stop="111243" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="92" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111242" i_stop="110412" i_length="831">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110411" g_stop="110324" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="180" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110323" i_stop="109843" i_length="481">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109842" g_stop="109754" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="269" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="109753" i_stop="109596" i_length="158">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109595" g_stop="109521" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="344" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="109520" i_stop="107686" i_length="1835">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107685" g_stop="107371" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="659" r_length="315" r_score="0.968"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="107370" i_stop="106866" i_length="505">
            <donor d_prob="0.210" d_score="0.82"/>
            <acceptor a_prob="0.953" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="106865" g_stop="106858" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="667" r_length="8" r_score="0.625"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="106857" i_stop="105382" i_length="1476">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="105381" g_stop="105362" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="687" r_length="20" r_score="0.750"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="105361" i_stop="105303" i_length="59">
            <donor d_prob="0.204" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="105302" g_stop="105287" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="688" r_stop="703" r_length="16" r_score="0.750"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="105286" i_stop="104796" i_length="491">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="0.703" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="104795" g_stop="104769" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="704" r_stop="730" r_length="27" r_score="0.481"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E689161" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111416" e_stop="111415"/>
          <exon e_start="111332" e_stop="111243"/>
          <exon e_start="110411" e_stop="110324"/>
          <exon e_start="109842" e_stop="109754"/>
          <exon e_start="109595" e_stop="109521"/>
          <exon e_start="107685" e_stop="107371"/>
          <exon e_start="106865" e_stop="106858"/>
          <exon e_start="105381" e_stop="105362"/>
          <exon e_start="105302" e_stop="105287"/>
          <exon e_start="104795" e_stop="104769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTAAGCACACTCTACAACTTCCTGAGAAGATTTCTTTATGATAACAGTTGTACCTTTTGATTGATATAACACTTGGATGCAGATGGAAATAAGCCGTTTCTTGAGGCACCATGCTCGAACAATTCAAGGGAAATCTCAGCTCTTCATAAACTCTTATGCAAAAGCTCTTGAGGTAGCGATTCTTCTTTTATTTTGCTTTAACAGAGAAATGCAAGGTTAAGACTGGTATATGCTAGAAACCCTGATGATAAGAATTAGATGCTAGTCGTCCTCTCAGTCTGAAATAAATTATAGGATTGATTTTCAAACTGACAATGTGGTGTTGTATAAGTGACTTATTTTCTGTCCAAGAGTAGTTGTGAGGCAGTGCACAATGGATGTAGAGAGCAGCTGAGGGCTGTGCTTAGCATTGTCTTGTTGTATTATCCATCCTTACCACTTCTATTTTCTCTTGAAGATTTTTTTTTGTTAAAGAATGGTATTAGCACGAAGGGTGTGCTGAAAGCCCCTTTCTTTTGGAGGGCTTATGATTGGCGCTTTCCCTTTTATCAACAATTACTTTGGTGTATGTGGCCACTCTAAACTAATTTTATCAGTGGTTGAGTCTTAGACCTTCTTGAACTGTCTAATTTTATAGTTGGGTTTGTAACTTTGTATAGATCTGCTTTTGATGAAGTTATCTTTGTTGGTCAAATGTTTGTTTACCTAGGAATTGACTTGTTTGATTCCAAAAGAAACATATTGTTTGTTGTAAAACCTCTTCTTAAGCTATTGCTATTGCTCCTTTTATGTGGTATTGGATTTTTCTGAGTTTATCATTCTTAGTTGGCTAGGGCTGCCGATGCTAGTAGGTCTTTGAGATAGGCCTCAGTATTCCTTTTGTAGACGATCTCTTGATATTGCATTTTTATGGAACTTAGTCATTGTGAGATGTCTCTTATTCCTTTTTGCTCATATGTTCAATTCTGTGATACCTTACTGTTTCAACTTTGGCATAATGCAGATTATCCCCCGTCAGCTATGTGACAATGCTGGTTTTGATGCAACTGATGTGCTGAACAAGCTCAGACAAAAACACGCTCTTCCGTCTGGTATGCCTACCATTTCCCTTTGGAGGATGTATAATGATAACAGTAACTTTTTCTTTCTTAAAACAATGATAATAAGAACAGTATTAACTTTTTAGCCTTTCAAGTTTTCTAGCTACTTAGAGGGCAGTTAGTTTTTCTTGGGATGGCTCTCTGCAAAAGTTTTGGGGTTCTTTTCTTATTGTGTTCCCTTAATAATGGTACTCCTTCTGGTCCCTATTTCTGAAAGGTTCGGAGTACGAGGGTCATAGAACTTAATTTTGACTATTGGTATATGATTCTTCAAATAATTTAAAGCAAAATTTGCATATTCGAAAAGCTCAGGGGAAGTACTAGTAGTCATCCTAGTTAATGATTCAGAATATTTTTTTTTATTAAATAGTAACACCACACTTAAAATAGGAAAGGACGTAGTACCAAAAGAAAAAGGAAAAATAAAGAAAGAAATCTCATGTTCCTTAATGGTAAACACTATCCTGGGCAGGTGAGGGTGCACCTTATGGAGTTGACATTAATACTGGTGGCATAGCTGATTCATTTGCCAACTTTGTTTGGGAGCCAGCAGTCGTGAAGGTATATTTACATCCGCTGTTCTTTTTTTATTTGATAAATTTTGTTTAGCTTGTTATTAATCAATCACTCATCTTTTCTCATTTGTTTGATACCAAAGCGTCAGTTTTTCACAAGTTATTCTTGGTTCCTAAAAGTATTACAAATTCTACTTTGTCCAGATAAATGCCATCAATGCAGCCACTGAAGCTGCATGCCTCATTCTGAGTGTAGATGAGACAGTGAAGAATCCTAAGGTAATTTCGTCTTTTTTGAAACGCCAACTTCTCCCCAATTTTTCTACCATTATGGACATAATAGACAATAGGTTTCATGTATTTTTATCATCAATTTTCACATTCTCCCTTTTATTTTCTCATATTTCCTTTTGAAATTCTTCTGCGAGACAGTTTGTCAGAACTAAAAAAGAGATTCTGGTTAAGAAAGATAATTGTTATTATTGGAAATTTAAGAAATATAATTCTTTTTGTCAGAAGAGAAGAACAATGAGAATGGAGGTGAATGTGTTGAGGAAACCTTGAAACTCCTATTGTACTCCCTACACAAACTAGTAGGCAGAACAAGAACATGGAGAGGCCAACCTAAACATTATAGTCTCTTTAAGTTTTCAAAGTCTTGGAAAATATTGGTTTTGAAGAAAGGTTTTAGGAAGTGTCTTGGAAAGTGCAAAAGTTTTCAGATCTCAAATTGTGTTATCAAGTGCTTTTAGCAAAGGAAAGACTAAAGTGTATGAAACAGTGGGGCAGGTAAATGTAGTTGTAAGAGGCGGGAGGGTGACAACTTTATAGTGATTGTTAATTGAAAAATGAAATCTAAGAGAGATCGTATGTACTCTTAAAATTTGGAGATTTTTTGGCTTAGTGCATCTTTCGGATGTATGGTTACATAGGATCATTGCGCCACAATATGAATGATTTCATTGGTTCAGCAAATCATGTCATTTTGCTGCTGTTGTTATCTTTTCAATCCTGCCTTGATTTCGCTTCTTTTTAGCCGAGGGTTTGTTGGAAATAGCCTTTCTACCTCACAAAGATTCGGTTAAGGTCTGTGTATATCCTACCCTCTCCACACCTCACTTATGGGATTACATTGGGTATGTTGTTGCTGTTATTAGCAAATCAACGTCACAACTGTCAATGCATTGCAGGAATTTTACTGCCTCCCACTGTCGTACTCATAAGTTGATAGTTGCTTAGCAAGAATTGCTGGAAGAAAATAACCCAGTAATGATGCGGTAGCTCTTCTGACTTTTGTTGATTAACAGTATAACTTAAGATCGTTGTGGCCAGACCTTAGTGGTAAGGTTTGTTATTACTATGAATTTTAGGATGTATAGGGGTCAAGAATTTATCCCATTCCTCGATCTTCTAACAAAGCAAAGCGGGGAAGGAAAAAATAATAGAGATGTGGTATGGAGGGAAACTCTATATGGTGCCATTTAGCCTAAGCTGACAAGGTTATAGTAGTCTGGTCGCTCAGTGTTGCAGTCTGAGCTAGATGAGAAGAGACCGTAATGTGCAAAGTTTTGGCAAGTTCTCCTATATGTCTCACCTTTCTTTCGATAACTGAGAAATCCCTGAGGGCGAGTTGGCTCACTGTCCAAAACTCCGTGAATAATGTGCCCGTTTCTCTAGGGTTCTTCAATGTGCGGATTTTGTTTGTTGCAGGGTTTCAAAATGTGACGTGCACCTAGCCCCCACACATCACACACTTCTCTTATGTCTAGATCATAGCCTTGTGGTCTTCATATGTCTCGCAATTTTCTTCCTTTTAGAACAGTAGCTAAGGTGCTGGTTTCTTTGAGGATACCATTGCCTACTGTGGAGCGGAAAGGTATAAACTTGCACTCTACTTCTGCTGTGGTCTAAGAATTTCTGAATCTAGAAAAGTCTGATCAGTTTAAGCTAGTCTTCTTCAAGCTCACCATGTGTATCTGCAGTTTAGATGAAGTTTTGTGGATTCTTTAGGTTTGCTTATCTGGTTTCCTTTTTGCTTCTGTTGGATGTGTCCATTGAACTTGTAAGCATCCTTACCATGCGTGAAATAATTCCTATTTCCTTCCGAATTGCAGTCTGAGAGTGCACAAGGAGATGCTGCTGCAAGTGCCATGGGTGGTGGTAGAGGGCGTGGACGTGGACGTGGAATGAGACGGCGATAGATTTCATAAGTTCTTTTGCAGATTTTGCTATGATTTTTATGTAGTGTTTGCTTTTTTCCCCATGTTTGCTCCTCCCTTCTGTAGTTCTAGTTGTCTCCCTCGATCAAAATGTTCAAATTTGGACATCGATTCTCATATAGCAACCGAGAAACAATCAAAACAGAGCTGTGTTAAGTTCAGGCAACATCCAGTAAACTAAATTATTTTTGTTGCTGTCAGTTTTGCAATGTACGAAGCCTGCCGCTGGATATATAATATTCTGTGTATTAAACTTCATCTTGTGTTGAAAAGTTCACAAATTTACGACATAAAAACTTTTAATTTGTCTGTTTAAGGCCGTTGGTATATATAAGAAACCAATGGAAAAAGAGGTCTTTGGAAAAATAATTGATAAGTATAATAACATAGTGGTTTAGAGATGTTTTCAAATCCAGCTTAAATATTTACCACTTAAATCTTTTTAAGTAAGCTGTTGCAGCCTACTTTGAGCTTGAAGCTTTCTGTTACTCCTTTATCTTCCACAGACCTGTACACATACTTCTTTCAATCCATTTTAATTGTTTTCGAACATCAGTATGGCTTGTATTCAAAGTCAAATTAGATTACGTTAATTTGATACTTTAAACTTAAATTTTAGTTATTAAAAACTATGAAAAGTATTATAAATTGTAATTTTTTACTGAAAAAATATATCATAAAATATTAATAAAATTTTTTGTTGGTTGACTTTAAGAAAGGCAACCATGGGTACTAAAAAGGAAGGGAGAGAGTATTGGAGGGATTATCTGAGAATGGCACAAACATAGTGATACAAAATCCAACATATATTCGTTGCTTTCTGAACTTTATAAAACCTACAGAAATCAATTCTTTTGACAAGAAAGAATTCTATTGATACAAAAGCACAACTGAGCTTTTGTGCTGGATTTATGTACACGAACAAAACTTTTGAATCTGTTACAGAATGATCATACAACATCATATAGATTAAACCTATTCCACTCGTTCACTAATATTTTCTATAAGCTGGTTTGCACTCAGCACTGCATTTTCAGGCGGAGTTCTACGTTTGATTAGCTGTCTTGGACTTCTACACGTCTGAATTATATTTGACATTTCTTCAGCTTTTGCAATGATGGATTTTCTCCTTGAATGCGATGTGTCTCCATCTCTAATATATGTGTTGGGCAACTTCTCGGCGTAGGGTGTAGATACCATCATGTTTCTAAGTTTCTCTGCATTATCATTCATGCCTTGTTTTGCGAGATCATTACAGAGTCTCTGATATGTGAGATACTGAGGAACTACTCCTCTCCGAATCATGTCATGAAACCACTCGACAGCTTCATCAAATTGATGCATCTTGCAGAACAGATGTATAAGCATGGTACTTGTAGCCAAGTCCAAATCAAAACCCTTTGTCCTCATTTCTTGGATGATTTGCAATGCCAGATCCAATCTATCCTGCTCACATAGCATCTTAACCAGCAAATGGTATGTTAGTCGATCTGCTACGTATCCAGATTCAATTAACTTGGTATAGAGGTTTAAGCCTTCTTCAATCTTCCCAAACTTGGAGAAGTACCGAAAAAAGTAATTGTAAGTTGTTGGAGTTGGCATAAAACCTCTATCTATCATCATCTTAAGAATCTTACTTGCCCCAGCAATATCTCCTGCCTTGCAAAAGCCCTTCACCAACGAATTGTAAGTTGATAGAGTTGGACCAGATTCCAACACTAACAGCCTCTCCATCATTCCTGATGCTTCCTTGAACCGTCCTGCTTCTCCTAAAGCATCAATTACTGGATTGTAGACAACAACATTGGGATGAATTCCTTCCTCTTTCATTTCATCAATTAGTTCAATTGCCATCTCAACTCTACGCATCCGGCACAATCCTTCAACAAGGGTACCATAAGTTACAACGCTAGGTTTTATGCCCTCCTTTTTCATCTCAGTCCACAACCGCTCAGCTTTCTTCAGCTTTCTTGATCGAAACCATCCATTTAGCAATATATTATAGACCCGAATAGATGGCGACCAATTTAAGTCTTTTCCTTTTCGCCTATAAAAATAATCTGAAGCTTCCCTAATATGCCCCTCTTTGCATAAAGAATCTAATAGTATCTCAAATAAGTTGTCTTCCAAGCCCAAACCATGTATCTCTAAATTAGTAGAAAATTCATATGTTCGAATGGCTGGTAAGAGCATACCTGCAAAAAAAAGAAAAAACATGGGTTACATGTACTCTTCAGATAATTAGAACTTTCATGGATTGAATATAAATGGAGGGAACAAAAGATAAGAAAAAGGTAAATTTTTTGCCTAAGTACTGAATTCAGTAAAAGACATATTTAAATAAGACAGTTCCCCTCATGTTTTTTACCTTATAACAGAAACAAATTACCATGTCGATATTAGGATGTAATCACATTATAGAACAAATTAATGCCTTTTACGGGTGATCCTGATAGGTATTCCAAATATTCATTTTTAACAAGCAAAATACAACACATTAGACATCTTTGAATAACCAATAACTAATTAATTGTATAAATTCAACGTAAAAATAGACCAACATTTAGCATAATGTACAACAACAACAACTCCGAATCCAGTTCTAACACAGCGCTTGTAGATCGTATTATCAAATCTAATATAAGGTTCTGAAGTTTTCAGCTTACTGACATGAGAACGTAATGAACTAGAGCAAACTACTAGCTACGAATAAAAATGAAGTTCAAAAACTCTATAACTTCATCTATTGCAAGAATGACATAGCTGGTCTTATCGAATGGTTCAGTTGAACCGTAGAAGAGGTCTTGCCCCC</genome_strand>
        <mrna_strand>CT..................................................................................ATGGAAATAAGCCGTTTCTTGAGGCACCATGCTCGAACAATTCAAGGGAAATCTCAGCTCTTCATAAACTCTTATGCAAAAGCTCTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCCCCGTCAGCTATGTGACAATGCTGGTTTTGATGCAACTGATGTGCTGAACAAGCTCAGACAAAAACACGCTCTTCCGTCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGTGCACCTTATGGAGTTGACATTAATACTGGTGGCATAGCTGATTCATTTGCCAACTTTGTTTGGGAGCCAGCAGTCGTGAAG..............................................................................................................................................................ATAAATGCCATCAATGCAGCCACTGAAGCTGCATGCCTCATTCTGAGTGTAGATGAGACAGTGAAGAATCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGAGAGTGCACAAGGAGATGCTGCTGCAAGTGCCATGGGTGGTGGTAGAGGGCGTGGACGTGGACGTGGAATGAGACGGCGATNGATTTCATAAGTTCTTTTGCAGATTTTGCTATGATTTTTATGTAGTGTTTGCTTTTTTCCCCATGTTTGCTCCTCCCTTCTGTAGTTCTAGTTGTCTCCCTCGATCAAAATGTTCAAATTTGGACATCGATTCTCATATAGCAACCGAGAAACAATCAAAACAGAGCTGTGTTAAGTTCAGGCAACATCCAGTAAACTAAATTATTTTTGTTGCTGTCNNANAAAAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAA...........................................................AAAAAAAAAAAAAAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AANNACCGGGGGGGGGGGGCCCCCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E457243" ref_strand="+" ref_description="SGN-E457243 [cPRO-1-L14]">
      <seq>tttttttttttttttttaagtttaatacacagaatattatatatccaacggtaggcttcgtacattgcacaactgacagcagcaaaaatgatttagttcactggatgttgcctgaacttaacacaactctgttttaattgttttcggttgctatatgagaatccgtgcccaaatttgaacattttgatccgagggagacaactagaactacagaagggaggagcaaacaatgccaaaaaagccaacactacattaaaatcctagccaaatctgccaaagaacttgtgaaatctatcgccgcctcattccacgttcacgttcacgccctctaacaccacccatgggactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="+" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62214" stop="107838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105366" g_stop="105385" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="0.800"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105386" i_stop="107327" i_length="1942">
            <donor d_prob="0.827" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107328" g_stop="107656" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="349" r_length="329" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="+" ref_id="SGN-E457243" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E457243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105366" e_stop="105385"/>
          <exon e_start="107328" e_stop="107656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTTCTTTTTTTTGCAGGTATGCTCTTACCAGCCATTCGAACATATGAATTTTCTACTAATTTAGAGATACATGGTTTGGGCTTGGAAGACAACTTATTTGAGATACTATTAGATTCTTTATGCAAAGAGGGGCATATTAGGGAAGCTTCAGATTATTTTTATAGGCGAAAAGGAAAAGACTTAAATTGGTCGCCATCTATTCGGGTCTATAATATATTGCTAAATGGATGGTTTCGATCAAGAAAGCTGAAGAAAGCTGAGCGGTTGTGGACTGAGATGAAAAAGGAGGGCATAAAACCTAGCGTTGTAACTTATGGTACCCTTGTTGAAGGATTGTGCCGGATGCGTAGAGTTGAGATGGCAATTGAACTAATTGATGAAATGAAAGAGGAAGGAATTCATCCCAATGTTGTTGTCTACAATCCAGTAATTGATGCTTTAGGAGAAGCAGGACGGTTCAAGGAAGCATCAGGAATGATGGAGAGGCTGTTAGTGTTGGAATCTGGTCCAACTCTATCAACTTACAATTCGTTGGTGAAGGGCTTTTGCAAGGCAGGAGATATTGCTGGGGCAAGTAAGATTCTTAAGATGATGATAGATAGAGGTTTTATGCCAACTCCAACAACTTACAATTACTTTTTTCGGTACTTCTCCAAGTTTGGGAAGATTGAAGAAGGCTTAAACCTCTATACCAAGTTAATTGAATCTGGATACGTAGCAGATCGACTAACATACCATTTGCTGGTTAAGATGCTATGTGAGCAGGATAGATTGGATCTGGCATTGCAAATCATCCAAGAAATGAGGACAAAGGGTTTTGATTTGGACTTGGCTACAAGTACCATGCTTATACATCTGTTCTGCAAGATGCATCAATTTGATGAAGCTGTCGAGTGGTTTCATGACATGATTCGGAGAGGAGTAGTTCCTCAGTATCTCACATATCAGAGACTCTGTAATGATCTCGCAAAACAAGGCATGAATGATAATGCAGAGAAACTTAGAAACATGATGGTATCTACACCCTACGCCGAGAAGTTGCCCAACACATATATTAGAGATGGAGACACATCGCATTCAAGGAGAAAATCCATCATTGCAAAAGCTGAAGAAATGTCAAATATAATTCAGACGTGTAGAAGTCCAAGACAGCTAATCAAACGTAGAACTCCGCCTGAAAATGCAGTGCTGAGTGCAAACCAGCTTATAGAAAATATTAGTGAACGAGTGGAATAGGTTTAATCTATATGATGTTGTATGATCATTCTGTAACAGATTCAAAAGTTTTGTTCGTGTACATAAATCCAGCACAAAAGCTCAGTTGTGCTTTTGTATCAATAGAATTCTTTCTTGTCAAAAGAATTGATTTCTGTAGGTTTTATAAAGTTCAGAAAGCAACGAATATATGTTGGATTTTGTATCACTATGTTTGTGCCATTCTCAGATAATCCCTCCAATACTCTCTCCCTTCCTTTTTAGTACCCATGGTTGCCTTTCTTAAAGTCAACCAACAAAAAATTTTATTAATATTTTATGATATATTTTTTCAGTAAAAAATTACAATTTATAATACTTTTCATAGTTTTTAATAACTAAAATTTAAGTTTAAAGTATCAAATTAACGTAATCTAATTTGACTTTGAATACAAGCCATACTGATGTTCGAAAACAATTAAAATGGATTGAAAGAAGTATGTGTACAGGTCTGTGGAAGATAAAGGAGTAACAGAAAGCTTCAAGCTCAAAGTAGGCTGCAACAGCTTACTTAAAAAGATTTAAGTGGTAAATATTTAAGCTGGATTTGAAAACATCTCTAAACCACTATGTTATTATACTTATCAATTATTTTTCCAAAGACCTCTTTTTCCATTGGTTTCTTATATATACCAACGGCCTTAAACAGACAAATTAAAAGTTTTTATGTCGTAAATTTGTGAACTTTTCAACACAAGATGAAGTTTAATACACAGAATATTATATATCCAGCGGCAGGCTTCGTACATTGCAAAACTGACAGCAACAAAAATAATTTAGTTTACTGGATGTTGCCTGAACTTAACACAGCTCTGTTTTGATTGTTTCTCGGTTGCTATATGAGAATCGATGTCCAAATTTGAACATTTTGAT-CGAGGGAGACAACTAGAACTACAGAAGGGAGGAGCAAACATGGGGAAAAAAGCAAACACTACATAAAAATCATAGCAAAATCTGCAAAAGAACTTATGAAATCTATCGCCGTCTCATTCCACGTCCACGTCCACGCCCTCTACCACCACCCATGGCACTT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAATACACAGAATATTATATATCCAACGGTAGGCTTCGTACATTGCACAACTGACAGCAGCAAAAATGATTTAGTTCACTGGATGTTGCCTGAACTTAACACAACTCTGTTTTAATTGTTT-TCGGTTGCTATATGAGAATCCGTGCCCAAATTTGAACATTTTGATCCGAGGGAGACAACTAGAACTACAGAAGGGAGGAGCAAACAATGCCAAAAAAGCCAACACTACATTAAAATCCTAGCCAAATCTGCCAAAGAACTTGTGAAATCTATCGCCGCCTCATTCCACGTTCACGTTCACGCCCTCTAACACCACCCATGGGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E234749" ref_strand="+" ref_description="SGN-E234749 [cLEL-6-L22](-)">
      <seq>ggcacgagggacgtggaatgacacggcgatagatttcataagttcttttgcagattttgctatgatttttatgtagtgtttgcttttttccccatgtttgctcctcccttctgtagttctagttgtctccctcgatcaaaatgttcaaatttggacatcgattctcatatagcgtcccagaaacaatcaaaacagagctgtgttaagttcaggcaacatccagtaaactaaattatttttgttgctgtcagttttgcaatgtacgaagcctgccgctggatatataatattctgtgtattaaacttcatcttgtgttgaaaagttctcaaattttcggcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="107927" stop="62214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107629" g_stop="107275" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E234749" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107629" e_stop="107275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACGTGG-ACGTGGAATGAGACGGCGATAGATTTCATAAGTTCTTTTGCAGATTTTGCTATGATTTTTATGTAGTGTTTGCTTTTTTCCCCATGTTTGCTCCTCCCTTCTGTAGTTCTAGTTGTCTCCCTCGATCAAAATGTTCAAATTTGGACATCGATTCTCATATAGCAACCGAGAAACAATCAAAACAGAGCTGTGTTAAGTTCAGGCAACATCCAGTAAACTAAATTATTTTTGTTGCTGTCAGTTTTGCAATGTACGAAGCCTGCCGCTGGATATATAATATTCTGTGTATTAAACTTCATCTTGTGTTGAAAAGTTCACAAATTTACGACATAAAAACTTTTAATTT</genome_strand>
        <mrna_strand>GGCACGAGGGACGTGGAATGACACGGCGATAGATTTCATAAGTTCTTTTGCAGATTTTGCTATGATTTTTATGTAGTGTTTGCTTTTTTCCCCATGTTTGCTCCTCCCTTCTGTAGTTCTAGTTGTCTCCCTCGATCAAAATGTTCAAATTTGGACATCGATTCTCATATAGCGTCCCAGAAACAATCAAAACAGAGCTGTGTTAAGTTCAGGCAACATCCAGTAAACTAAATTATTTTTGTTGCTGTCAGTTTTGCAATGTACGAAGCCTGCCGCTGGATATATAATATTCTGTGTATTAAACTTCATCTTGTGTTGAAAAGTTCTCAAATTTTCGGCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235037" ref_strand="+" ref_description="SGN-E235037 [cLEL-6-L22](-)">
      <seq>ggcacgagggacgtggaatgagacggcgatagatttcataagttcttttgcagattttgctatgatttttatgtagtgtttgcttttttccccatgtttgctcctcccttctgtagttctagttgtctccctcgatcaaaatgttcaaatttggacatcgattctcatatagcaaccgagaaacaatcaaaacagagctgtgttaagttcaggcaacatccagtaaactaaattatttttgttgctgtcagttttgcaatgtacgaagcctgccgctggatatataatattctgtgtattaaacttcatcttgtgttgaaaagttcacaaatttacgccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="107927" stop="7754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107629" g_stop="107275" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E235037" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107629" e_stop="107275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACGTGG-ACGTGGAATGAGACGGCGATAGATTTCATAAGTTCTTTTGCAGATTTTGCTATGATTTTTATGTAGTGTTTGCTTTTTTCCCCATGTTTGCTCCTCCCTTCTGTAGTTCTAGTTGTCTCCCTCGATCAAAATGTTCAAATTTGGACATCGATTCTCATATAGCAACCGAGAAACAATCAAAACAGAGCTGTGTTAAGTTCAGGCAACATCCAGTAAACTAAATTATTTTTGTTGCTGTCAGTTTTGCAATGTACGAAGCCTGCCGCTGGATATATAATATTCTGTGTATTAAACTTCATCTTGTGTTGAAAAGTTCACAAATTTACGACATAAAAACTTTTAATTT</genome_strand>
        <mrna_strand>GGCACGAGGGACGTGGAATGAGACGGCGATAGATTTCATAAGTTCTTTTGCAGATTTTGCTATGATTTTTATGTAGTGTTTGCTTTTTTCCCCATGTTTGCTCCTCCCTTCTGTAGTTCTAGTTGTCTCCCTCGATCAAAATGTTCAAATTTGGACATCGATTCTCATATAGCAACCGAGAAACAATCAAAACAGAGCTGTGTTAAGTTCAGGCAACATCCAGTAAACTAAATTATTTTTGTTGCTGTCAGTTTTGCAATGTACGAAGCCTGCCGCTGGATATATAATATTCTGTGTATTAAACTTCATCTTGTGTTGAAAAGTTCACAAATTTACGCCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709637" ref_strand="+" ref_description="SGN-E709637 [FA52CF05]">
      <seq>gaacaattcaagggaaatctcagctcttcataaactcttatgcaaaagctcttgagattatcccccgtcagctatgtgacaatgctggttttgatgcaactgatgtgctgaacaagctcagacaaaaacacgctcttccgtctggtgagggtgcaccttatggagttgacattaatactggtggcatagctgattcatttgccaactttgtttgggagccagcagtcgtgaagataaatgccatcaatgcagccactgaagctgcatgcctcattctgagtgtagatgagacagtgaagaatcctaagtctgagagtgcacaaggagatgctgctgcaagtgccatgggtggtggtagagggcgtggacgtggacgtggaatgagacggcgatagatttcataagttcttttgcagattttgctatgatttttatgtagtgtttgcttttttccccatgtttgctcctcccttctgtagttctagttgtctccctcgatcaaaatgttcaaatttggacatcgattctcatatagcaaccgagaaacaatcaaaacagagctgtgttaagttcaggcaacatccagtaaactaaattatttttgttgctgtcagttttgcaatgtacgaagcctgccgctggatatataatattctgtgtattaaacttcatcttgtgttgaaaagttcacaaatttacgacataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="111598" stop="106985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111298" g_stop="111243" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111242" i_stop="110412" i_length="831">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110411" g_stop="110324" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="144" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110323" i_stop="109843" i_length="481">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109842" g_stop="109754" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="233" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109753" i_stop="109596" i_length="158">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109595" g_stop="109521" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="308" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="109520" i_stop="107686" i_length="1835">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107685" g_stop="107280" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="714" r_length="406" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E709637" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111298" e_stop="111243"/>
          <exon e_start="110411" e_stop="110324"/>
          <exon e_start="109842" e_stop="109754"/>
          <exon e_start="109595" e_stop="109521"/>
          <exon e_start="107685" e_stop="107280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAATTCAAGGGAAATCTCAGCTCTTCATAAACTCTTATGCAAAAGCTCTTGAGGTAGCGATTCTTCTTTTATTTTGCTTTAACAGAGAAATGCAAGGTTAAGACTGGTATATGCTAGAAACCCTGATGATAAGAATTAGATGCTAGTCGTCCTCTCAGTCTGAAATAAATTATAGGATTGATTTTCAAACTGACAATGTGGTGTTGTATAAGTGACTTATTTTCTGTCCAAGAGTAGTTGTGAGGCAGTGCACAATGGATGTAGAGAGCAGCTGAGGGCTGTGCTTAGCATTGTCTTGTTGTATTATCCATCCTTACCACTTCTATTTTCTCTTGAAGATTTTTTTTTGTTAAAGAATGGTATTAGCACGAAGGGTGTGCTGAAAGCCCCTTTCTTTTGGAGGGCTTATGATTGGCGCTTTCCCTTTTATCAACAATTACTTTGGTGTATGTGGCCACTCTAAACTAATTTTATCAGTGGTTGAGTCTTAGACCTTCTTGAACTGTCTAATTTTATAGTTGGGTTTGTAACTTTGTATAGATCTGCTTTTGATGAAGTTATCTTTGTTGGTCAAATGTTTGTTTACCTAGGAATTGACTTGTTTGATTCCAAAAGAAACATATTGTTTGTTGTAAAACCTCTTCTTAAGCTATTGCTATTGCTCCTTTTATGTGGTATTGGATTTTTCTGAGTTTATCATTCTTAGTTGGCTAGGGCTGCCGATGCTAGTAGGTCTTTGAGATAGGCCTCAGTATTCCTTTTGTAGACGATCTCTTGATATTGCATTTTTATGGAACTTAGTCATTGTGAGATGTCTCTTATTCCTTTTTGCTCATATGTTCAATTCTGTGATACCTTACTGTTTCAACTTTGGCATAATGCAGATTATCCCCCGTCAGCTATGTGACAATGCTGGTTTTGATGCAACTGATGTGCTGAACAAGCTCAGACAAAAACACGCTCTTCCGTCTGGTATGCCTACCATTTCCCTTTGGAGGATGTATAATGATAACAGTAACTTTTTCTTTCTTAAAACAATGATAATAAGAACAGTATTAACTTTTTAGCCTTTCAAGTTTTCTAGCTACTTAGAGGGCAGTTAGTTTTTCTTGGGATGGCTCTCTGCAAAAGTTTTGGGGTTCTTTTCTTATTGTGTTCCCTTAATAATGGTACTCCTTCTGGTCCCTATTTCTGAAAGGTTCGGAGTACGAGGGTCATAGAACTTAATTTTGACTATTGGTATATGATTCTTCAAATAATTTAAAGCAAAATTTGCATATTCGAAAAGCTCAGGGGAAGTACTAGTAGTCATCCTAGTTAATGATTCAGAATATTTTTTTTTATTAAATAGTAACACCACACTTAAAATAGGAAAGGACGTAGTACCAAAAGAAAAAGGAAAAATAAAGAAAGAAATCTCATGTTCCTTAATGGTAAACACTATCCTGGGCAGGTGAGGGTGCACCTTATGGAGTTGACATTAATACTGGTGGCATAGCTGATTCATTTGCCAACTTTGTTTGGGAGCCAGCAGTCGTGAAGGTATATTTACATCCGCTGTTCTTTTTTTATTTGATAAATTTTGTTTAGCTTGTTATTAATCAATCACTCATCTTTTCTCATTTGTTTGATACCAAAGCGTCAGTTTTTCACAAGTTATTCTTGGTTCCTAAAAGTATTACAAATTCTACTTTGTCCAGATAAATGCCATCAATGCAGCCACTGAAGCTGCATGCCTCATTCTGAGTGTAGATGAGACAGTGAAGAATCCTAAGGTAATTTCGTCTTTTTTGAAACGCCAACTTCTCCCCAATTTTTCTACCATTATGGACATAATAGACAATAGGTTTCATGTATTTTTATCATCAATTTTCACATTCTCCCTTTTATTTTCTCATATTTCCTTTTGAAATTCTTCTGCGAGACAGTTTGTCAGAACTAAAAAAGAGATTCTGGTTAAGAAAGATAATTGTTATTATTGGAAATTTAAGAAATATAATTCTTTTTGTCAGAAGAGAAGAACAATGAGAATGGAGGTGAATGTGTTGAGGAAACCTTGAAACTCCTATTGTACTCCCTACACAAACTAGTAGGCAGAACAAGAACATGGAGAGGCCAACCTAAACATTATAGTCTCTTTAAGTTTTCAAAGTCTTGGAAAATATTGGTTTTGAAGAAAGGTTTTAGGAAGTGTCTTGGAAAGTGCAAAAGTTTTCAGATCTCAAATTGTGTTATCAAGTGCTTTTAGCAAAGGAAAGACTAAAGTGTATGAAACAGTGGGGCAGGTAAATGTAGTTGTAAGAGGCGGGAGGGTGACAACTTTATAGTGATTGTTAATTGAAAAATGAAATCTAAGAGAGATCGTATGTACTCTTAAAATTTGGAGATTTTTTGGCTTAGTGCATCTTTCGGATGTATGGTTACATAGGATCATTGCGCCACAATATGAATGATTTCATTGGTTCAGCAAATCATGTCATTTTGCTGCTGTTGTTATCTTTTCAATCCTGCCTTGATTTCGCTTCTTTTTAGCCGAGGGTTTGTTGGAAATAGCCTTTCTACCTCACAAAGATTCGGTTAAGGTCTGTGTATATCCTACCCTCTCCACACCTCACTTATGGGATTACATTGGGTATGTTGTTGCTGTTATTAGCAAATCAACGTCACAACTGTCAATGCATTGCAGGAATTTTACTGCCTCCCACTGTCGTACTCATAAGTTGATAGTTGCTTAGCAAGAATTGCTGGAAGAAAATAACCCAGTAATGATGCGGTAGCTCTTCTGACTTTTGTTGATTAACAGTATAACTTAAGATCGTTGTGGCCAGACCTTAGTGGTAAGGTTTGTTATTACTATGAATTTTAGGATGTATAGGGGTCAAGAATTTATCCCATTCCTCGATCTTCTAACAAAGCAAAGCGGGGAAGGAAAAAATAATAGAGATGTGGTATGGAGGGAAACTCTATATGGTGCCATTTAGCCTAAGCTGACAAGGTTATAGTAGTCTGGTCGCTCAGTGTTGCAGTCTGAGCTAGATGAGAAGAGACCGTAATGTGCAAAGTTTTGGCAAGTTCTCCTATATGTCTCACCTTTCTTTCGATAACTGAGAAATCCCTGAGGGCGAGTTGGCTCACTGTCCAAAACTCCGTGAATAATGTGCCCGTTTCTCTAGGGTTCTTCAATGTGCGGATTTTGTTTGTTGCAGGGTTTCAAAATGTGACGTGCACCTAGCCCCCACACATCACACACTTCTCTTATGTCTAGATCATAGCCTTGTGGTCTTCATATGTCTCGCAATTTTCTTCCTTTTAGAACAGTAGCTAAGGTGCTGGTTTCTTTGAGGATACCATTGCCTACTGTGGAGCGGAAAGGTATAAACTTGCACTCTACTTCTGCTGTGGTCTAAGAATTTCTGAATCTAGAAAAGTCTGATCAGTTTAAGCTAGTCTTCTTCAAGCTCACCATGTGTATCTGCAGTTTAGATGAAGTTTTGTGGATTCTTTAGGTTTGCTTATCTGGTTTCCTTTTTGCTTCTGTTGGATGTGTCCATTGAACTTGTAAGCATCCTTACCATGCGTGAAATAATTCCTATTTCCTTCCGAATTGCAGTCTGAGAGTGCACAAGGAGATGCTGCTGCAAGTGCCATGGGTGGTGGTAGAGGGCGTGGACGTGGACGTGGAATGAGACGGCGATAGATTTCATAAGTTCTTTTGCAGATTTTGCTATGATTTTTATGTAGTGTTTGCTTTTTTCCCCATGTTTGCTCCTCCCTTCTGTAGTTCTAGTTGTCTCCCTCGATCAAAATGTTCAAATTTGGACATCGATTCTCATATAGCAACCGAGAAACAATCAAAACAGAGCTGTGTTAAGTTCAGGCAACATCCAGTAAACTAAATTATTTTTGTTGCTGTCAGTTTTGCAATGTACGAAGCCTGCCGCTGGATATATAATATTCTGTGTATTAAACTTCATCTTGTGTTGAAAAGTTCACAAATTTACGACATAAAAACTTTT</genome_strand>
        <mrna_strand>GAACAATTCAAGGGAAATCTCAGCTCTTCATAAACTCTTATGCAAAAGCTCTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCCCCGTCAGCTATGTGACAATGCTGGTTTTGATGCAACTGATGTGCTGAACAAGCTCAGACAAAAACACGCTCTTCCGTCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGTGCACCTTATGGAGTTGACATTAATACTGGTGGCATAGCTGATTCATTTGCCAACTTTGTTTGGGAGCCAGCAGTCGTGAAG..............................................................................................................................................................ATAAATGCCATCAATGCAGCCACTGAAGCTGCATGCCTCATTCTGAGTGTAGATGAGACAGTGAAGAATCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGAGAGTGCACAAGGAGATGCTGCTGCAAGTGCCATGGGTGGTGGTAGAGGGCGTGGACGTGGACGTGGAATGAGACGGCGATAGATTTCATAAGTTCTTTTGCAGATTTTGCTATGATTTTTATGTAGTGTTTGCTTTTTTCCCCATGTTTGCTCCTCCCTTCTGTAGTTCTAGTTGTCTCCCTCGATCAAAATGTTCAAATTTGGACATCGATTCTCATATAGCAACCGAGAAACAATCAAAACAGAGCTGTGTTAAGTTCAGGCAACATCCAGTAAACTAAATTATTTTTGTTGCTGTCAGTTTTGCAATGTACGAAGCCTGCCGCTGGATATATAATATTCTGTGTATTAAACTTCATCTTGTGTTGAAAAGTTCACAAATTTACGACATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E216064" ref_strand="+" ref_description="SGN-E216064 [cLEL-13-P18](-)">
      <seq>tttcataagttcttttgcagattttgctatgatttttatgtagtgttggcttttttccccatgtttgctcctcccttctgtagttctagttgtctccctcgatcaaaatgttcaaatttggacatcgattctcatatagcaaccgagaaacaatcaaaacagagctgtgttaagttcaggcaacatccagtaaactaaattatttttgttgctgtcagttttgcaatgtacgaagcctgccgctggatatataatattctgtgtattaaacttcatcttgtgttggagcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="107897" stop="62211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107597" g_stop="107292" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E216064" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107597" e_stop="107292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATAAGTTCTTTTGCAGATTTTGCTATGATTTTTATGTAGTGTTTGCTTTTTTCCCCATGTTTGCTCCTCCCTTCTGTAGTTCTAGTTGTCTCCCTCGATCAAAATGTTCAAATTTGGACATCGATTCTCATATAGCAACCGAGAAACAATCAAAACAGAGCTGTGTTAAGTTCAGGCAACATCCAGTAAACTAAATTATTTTTGTTGCTGTCAGTTTTGCAATGTACGAAGCCTGCCGCTGGATATATAATATTCTGTGTATTAAACTTCATCTTGTGTTGAAAAGTTCACAAATTTACGAC</genome_strand>
        <mrna_strand>TTTCATAAGTTCTTTTGCAGATTTTGCTATGATTTTTATGTAGTGTTGGCTTTTTTCCCCATGTTTGCTCCTCCCTTCTGTAGTTCTAGTTGTCTCCCTCGATCAAAATGTTCAAATTTGGACATCGATTCTCATATAGCAACCGAGAAACAATCAAAACAGAGCTGTGTTAAGTTCAGGCAACATCCAGTAAACTAAATTATTTTTGTTGCTGTCAGTTTTGCAATGTACGAAGCCTGCCGCTGGATATATAATATTCTGTGTATTAAACTTCATCTTGTGTTGGAGCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E429392" ref_strand="-" ref_description="SGN-E429392 [STM-52-A9]">
      <seq>agtcgacattaatactggtggcatagttgattcatttgccaactttttttgggagccagcagtcgtgaagataaatgccatcaatgcagccagtgaagcagcatgcctcattttgagtgtagatgagacagtgaagaatcctaagtctgagagtgcacaaggagatgctgctgcaagtgccatgggtggtggtagagggcgtggacgtggacgtggaatgaggcggcgatagatttcacaagttcttttgcagattttgctatgatttttatgtagtgtttgctttttttgcattgtttgctcctcccttctgtagttctagttgtctccctcggatcaaaatgttcaaatttgggcacggattctcatatagcaaccgaaaacaattaaaacagagttgtgttaagttcaggcaacatccagtgaactaaatcatttttgctgctgtcagttgtgcaatgtacgaagcctaccgttggatatataatattctgtgtattaaacttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="110123" stop="62214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109823" g_stop="109754" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109753" i_stop="109596" i_length="158">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109595" g_stop="109521" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="145" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109520" i_stop="107686" i_length="1835">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107685" g_stop="107308" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="523" r_length="378" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E429392" ref_strand="-">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E429392" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="109823" e_stop="109754"/>
          <exon e_start="109595" e_stop="109521"/>
          <exon e_start="107685" e_stop="107308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGACATTAATACTGGTGGCATAGCTGATTCATTTGCCAACTTTGTTTGGGAGCCAGCAGTCGTGAAGGTATATTTACATCCGCTGTTCTTTTTTTATTTGATAAATTTTGTTTAGCTTGTTATTAATCAATCACTCATCTTTTCTCATTTGTTTGATACCAAAGCGTCAGTTTTTCACAAGTTATTCTTGGTTCCTAAAAGTATTACAAATTCTACTTTGTCCAGATAAATGCCATCAATGCAGCCACTGAAGCTGCATGCCTCATTCTGAGTGTAGATGAGACAGTGAAGAATCCTAAGGTAATTTCGTCTTTTTTGAAACGCCAACTTCTCCCCAATTTTTCTACCATTATGGACATAATAGACAATAGGTTTCATGTATTTTTATCATCAATTTTCACATTCTCCCTTTTATTTTCTCATATTTCCTTTTGAAATTCTTCTGCGAGACAGTTTGTCAGAACTAAAAAAGAGATTCTGGTTAAGAAAGATAATTGTTATTATTGGAAATTTAAGAAATATAATTCTTTTTGTCAGAAGAGAAGAACAATGAGAATGGAGGTGAATGTGTTGAGGAAACCTTGAAACTCCTATTGTACTCCCTACACAAACTAGTAGGCAGAACAAGAACATGGAGAGGCCAACCTAAACATTATAGTCTCTTTAAGTTTTCAAAGTCTTGGAAAATATTGGTTTTGAAGAAAGGTTTTAGGAAGTGTCTTGGAAAGTGCAAAAGTTTTCAGATCTCAAATTGTGTTATCAAGTGCTTTTAGCAAAGGAAAGACTAAAGTGTATGAAACAGTGGGGCAGGTAAATGTAGTTGTAAGAGGCGGGAGGGTGACAACTTTATAGTGATTGTTAATTGAAAAATGAAATCTAAGAGAGATCGTATGTACTCTTAAAATTTGGAGATTTTTTGGCTTAGTGCATCTTTCGGATGTATGGTTACATAGGATCATTGCGCCACAATATGAATGATTTCATTGGTTCAGCAAATCATGTCATTTTGCTGCTGTTGTTATCTTTTCAATCCTGCCTTGATTTCGCTTCTTTTTAGCCGAGGGTTTGTTGGAAATAGCCTTTCTACCTCACAAAGATTCGGTTAAGGTCTGTGTATATCCTACCCTCTCCACACCTCACTTATGGGATTACATTGGGTATGTTGTTGCTGTTATTAGCAAATCAACGTCACAACTGTCAATGCATTGCAGGAATTTTACTGCCTCCCACTGTCGTACTCATAAGTTGATAGTTGCTTAGCAAGAATTGCTGGAAGAAAATAACCCAGTAATGATGCGGTAGCTCTTCTGACTTTTGTTGATTAACAGTATAACTTAAGATCGTTGTGGCCAGACCTTAGTGGTAAGGTTTGTTATTACTATGAATTTTAGGATGTATAGGGGTCAAGAATTTATCCCATTCCTCGATCTTCTAACAAAGCAAAGCGGGGAAGGAAAAAATAATAGAGATGTGGTATGGAGGGAAACTCTATATGGTGCCATTTAGCCTAAGCTGACAAGGTTATAGTAGTCTGGTCGCTCAGTGTTGCAGTCTGAGCTAGATGAGAAGAGACCGTAATGTGCAAAGTTTTGGCAAGTTCTCCTATATGTCTCACCTTTCTTTCGATAACTGAGAAATCCCTGAGGGCGAGTTGGCTCACTGTCCAAAACTCCGTGAATAATGTGCCCGTTTCTCTAGGGTTCTTCAATGTGCGGATTTTGTTTGTTGCAGGGTTTCAAAATGTGACGTGCACCTAGCCCCCACACATCACACACTTCTCTTATGTCTAGATCATAGCCTTGTGGTCTTCATATGTCTCGCAATTTTCTTCCTTTTAGAACAGTAGCTAAGGTGCTGGTTTCTTTGAGGATACCATTGCCTACTGTGGAGCGGAAAGGTATAAACTTGCACTCTACTTCTGCTGTGGTCTAAGAATTTCTGAATCTAGAAAAGTCTGATCAGTTTAAGCTAGTCTTCTTCAAGCTCACCATGTGTATCTGCAGTTTAGATGAAGTTTTGTGGATTCTTTAGGTTTGCTTATCTGGTTTCCTTTTTGCTTCTGTTGGATGTGTCCATTGAACTTGTAAGCATCCTTACCATGCGTGAAATAATTCCTATTTCCTTCCGAATTGCAGTCTGAGAGTGCACAAGGAGATGCTGCTGCAAGTGCCATGGGTGGTGGTAGAGGGCGTGGACGTGGACGTGGAATGAGACGGCGATAGATTTCATAAGTTCTTTTGCAGATTTTGCTATGATTTTTATGTAGTGTTTGCTTTTTTCCCCATGTTTGCTCCTCCCTTCTGTAGTTCTAGTTGTCTCCCTC-GATCAAAATGTTCAAATTTGGACATCGATTCTCATATAGCAACCGAGAAACAATCAAAACAGAGCTGTGTTAAGTTCAGGCAACATCCAGTAAACTAAATTATTTTTGTTGCTGTCAGTTTTGCAATGTACGAAGCCTGCCGCTGGATATATAATATTCTGTGTATTAAACTTCATCTTGTGTTGAAAAG</genome_strand>
        <mrna_strand>AGTCGACATTAATACTGGTGGCATAGTTGATTCATTTGCCAACTTTTTTTGGGAGCCAGCAGTCGTGAAG..............................................................................................................................................................ATAAATGCCATCAATGCAGCCAGTGAAGCAGCATGCCTCATTTTGAGTGTAGATGAGACAGTGAAGAATCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGAGAGTGCACAAGGAGATGCTGCTGCAAGTGCCATGGGTGGTGGTAGAGGGCGTGGACGTGGACGTGGAATGAGGCGGCGATAGATTTCACAAGTTCTTTTGCAGATTTTGCTATGATTTTTATGTAGTGTTTGCTTTTTTTGCATTGTTTGCTCCTCCCTTCTGTAGTTCTAGTTGTCTCCCTCGGATCAAAATGTTCAAATTTGGGCACGGATTCTCATATAGCAACCGA-AAACAATTAAAACAGAGTTGTGTTAAGTTCAGGCAACATCCAGTGAACTAAATCATTTTTGCTGCTGTCAGTTGTGCAATGTACGAAGCCTACCGTTGGATATATAATATTCTGTGTATTAAACTTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354956" ref_strand="+" ref_description="SGN-E354956 [cTOS-19-K6]">
      <seq>acacgctcttccgtctggtgagggtgcaccttatggagttgacattaatactggtggcatagctgattcatttgccaactttgtttgggagccagcagtcgtgaagataaatgccatcaatgcagccactgaagctgcatgcctcattctgagtgtagatgagacagtgaagaatcctaagtctgagagtgcacaaggagatgctgctgcaagtgccatgggtggtggtagagggcgtggacgtggacgtggaatgagacggcgatagatttcataagttcttttgcagattttgctatgatttttatgtagtgtttgcttttttccccatgtttgctcctcccttctgtagttctagttgtctccctcgatcaaaatgttcaaatttggacatcgattctcatatagcaaccgagaaacaatcaaaacagagctgtgttaagttcaggcaacatccagtaaactaaattatttttgttgctgtcagttttgcaatgtacgaagcctgccgctggatatataatattctgtgtattaaacttaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="110640" stop="107023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110340" g_stop="110324" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110323" i_stop="109843" i_length="481">
            <donor d_prob="0.960" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109842" g_stop="109754" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="106" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109753" i_stop="109596" i_length="158">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109595" g_stop="109521" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="181" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109520" i_stop="107686" i_length="1835">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107685" g_stop="107320" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="547" r_length="366" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E354956" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110340" e_stop="110324"/>
          <exon e_start="109842" e_stop="109754"/>
          <exon e_start="109595" e_stop="109521"/>
          <exon e_start="107685" e_stop="107320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACGCTCTTCCGTCTGGTATGCCTACCATTTCCCTTTGGAGGATGTATAATGATAACAGTAACTTTTTCTTTCTTAAAACAATGATAATAAGAACAGTATTAACTTTTTAGCCTTTCAAGTTTTCTAGCTACTTAGAGGGCAGTTAGTTTTTCTTGGGATGGCTCTCTGCAAAAGTTTTGGGGTTCTTTTCTTATTGTGTTCCCTTAATAATGGTACTCCTTCTGGTCCCTATTTCTGAAAGGTTCGGAGTACGAGGGTCATAGAACTTAATTTTGACTATTGGTATATGATTCTTCAAATAATTTAAAGCAAAATTTGCATATTCGAAAAGCTCAGGGGAAGTACTAGTAGTCATCCTAGTTAATGATTCAGAATATTTTTTTTTATTAAATAGTAACACCACACTTAAAATAGGAAAGGACGTAGTACCAAAAGAAAAAGGAAAAATAAAGAAAGAAATCTCATGTTCCTTAATGGTAAACACTATCCTGGGCAGGTGAGGGTGCACCTTATGGAGTTGACATTAATACTGGTGGCATAGCTGATTCATTTGCCAACTTTGTTTGGGAGCCAGCAGTCGTGAAGGTATATTTACATCCGCTGTTCTTTTTTTATTTGATAAATTTTGTTTAGCTTGTTATTAATCAATCACTCATCTTTTCTCATTTGTTTGATACCAAAGCGTCAGTTTTTCACAAGTTATTCTTGGTTCCTAAAAGTATTACAAATTCTACTTTGTCCAGATAAATGCCATCAATGCAGCCACTGAAGCTGCATGCCTCATTCTGAGTGTAGATGAGACAGTGAAGAATCCTAAGGTAATTTCGTCTTTTTTGAAACGCCAACTTCTCCCCAATTTTTCTACCATTATGGACATAATAGACAATAGGTTTCATGTATTTTTATCATCAATTTTCACATTCTCCCTTTTATTTTCTCATATTTCCTTTTGAAATTCTTCTGCGAGACAGTTTGTCAGAACTAAAAAAGAGATTCTGGTTAAGAAAGATAATTGTTATTATTGGAAATTTAAGAAATATAATTCTTTTTGTCAGAAGAGAAGAACAATGAGAATGGAGGTGAATGTGTTGAGGAAACCTTGAAACTCCTATTGTACTCCCTACACAAACTAGTAGGCAGAACAAGAACATGGAGAGGCCAACCTAAACATTATAGTCTCTTTAAGTTTTCAAAGTCTTGGAAAATATTGGTTTTGAAGAAAGGTTTTAGGAAGTGTCTTGGAAAGTGCAAAAGTTTTCAGATCTCAAATTGTGTTATCAAGTGCTTTTAGCAAAGGAAAGACTAAAGTGTATGAAACAGTGGGGCAGGTAAATGTAGTTGTAAGAGGCGGGAGGGTGACAACTTTATAGTGATTGTTAATTGAAAAATGAAATCTAAGAGAGATCGTATGTACTCTTAAAATTTGGAGATTTTTTGGCTTAGTGCATCTTTCGGATGTATGGTTACATAGGATCATTGCGCCACAATATGAATGATTTCATTGGTTCAGCAAATCATGTCATTTTGCTGCTGTTGTTATCTTTTCAATCCTGCCTTGATTTCGCTTCTTTTTAGCCGAGGGTTTGTTGGAAATAGCCTTTCTACCTCACAAAGATTCGGTTAAGGTCTGTGTATATCCTACCCTCTCCACACCTCACTTATGGGATTACATTGGGTATGTTGTTGCTGTTATTAGCAAATCAACGTCACAACTGTCAATGCATTGCAGGAATTTTACTGCCTCCCACTGTCGTACTCATAAGTTGATAGTTGCTTAGCAAGAATTGCTGGAAGAAAATAACCCAGTAATGATGCGGTAGCTCTTCTGACTTTTGTTGATTAACAGTATAACTTAAGATCGTTGTGGCCAGACCTTAGTGGTAAGGTTTGTTATTACTATGAATTTTAGGATGTATAGGGGTCAAGAATTTATCCCATTCCTCGATCTTCTAACAAAGCAAAGCGGGGAAGGAAAAAATAATAGAGATGTGGTATGGAGGGAAACTCTATATGGTGCCATTTAGCCTAAGCTGACAAGGTTATAGTAGTCTGGTCGCTCAGTGTTGCAGTCTGAGCTAGATGAGAAGAGACCGTAATGTGCAAAGTTTTGGCAAGTTCTCCTATATGTCTCACCTTTCTTTCGATAACTGAGAAATCCCTGAGGGCGAGTTGGCTCACTGTCCAAAACTCCGTGAATAATGTGCCCGTTTCTCTAGGGTTCTTCAATGTGCGGATTTTGTTTGTTGCAGGGTTTCAAAATGTGACGTGCACCTAGCCCCCACACATCACACACTTCTCTTATGTCTAGATCATAGCCTTGTGGTCTTCATATGTCTCGCAATTTTCTTCCTTTTAGAACAGTAGCTAAGGTGCTGGTTTCTTTGAGGATACCATTGCCTACTGTGGAGCGGAAAGGTATAAACTTGCACTCTACTTCTGCTGTGGTCTAAGAATTTCTGAATCTAGAAAAGTCTGATCAGTTTAAGCTAGTCTTCTTCAAGCTCACCATGTGTATCTGCAGTTTAGATGAAGTTTTGTGGATTCTTTAGGTTTGCTTATCTGGTTTCCTTTTTGCTTCTGTTGGATGTGTCCATTGAACTTGTAAGCATCCTTACCATGCGTGAAATAATTCCTATTTCCTTCCGAATTGCAGTCTGAGAGTGCACAAGGAGATGCTGCTGCAAGTGCCATGGGTGGTGGTAGAGGGCGTGGACGTGGACGTGGAATGAGACGGCGATAGATTTCATAAGTTCTTTTGCAGATTTTGCTATGATTTTTATGTAGTGTTTGCTTTTTTCCCCATGTTTGCTCCTCCCTTCTGTAGTTCTAGTTGTCTCCCTCGATCAAAATGTTCAAATTTGGACATCGATTCTCATATAGCAACCGAGAAACAATCAAAACAGAGCTGTGTTAAGTTCAGGCAACATCCAGTAAACTAAATTATTTTTGTTGCTGTCAGTTTTGCAATGTACGAAGCCTGCCGCTGGATATATAATATTCTGTGTATTAAACTTCATCT</genome_strand>
        <mrna_strand>ACACGCTCTTCCGTCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGTGCACCTTATGGAGTTGACATTAATACTGGTGGCATAGCTGATTCATTTGCCAACTTTGTTTGGGAGCCAGCAGTCGTGAAG..............................................................................................................................................................ATAAATGCCATCAATGCAGCCACTGAAGCTGCATGCCTCATTCTGAGTGTAGATGAGACAGTGAAGAATCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGAGAGTGCACAAGGAGATGCTGCTGCAAGTGCCATGGGTGGTGGTAGAGGGCGTGGACGTGGACGTGGAATGAGACGGCGATAGATTTCATAAGTTCTTTTGCAGATTTTGCTATGATTTTTATGTAGTGTTTGCTTTTTTCCCCATGTTTGCTCCTCCCTTCTGTAGTTCTAGTTGTCTCCCTCGATCAAAATGTTCAAATTTGGACATCGATTCTCATATAGCAACCGAGAAACAATCAAAACAGAGCTGTGTTAAGTTCAGGCAACATCCAGTAAACTAAATTATTTTTGTTGCTGTCAGTTTTGCAATGTACGAAGCCTGCCGCTGGATATATAATATTCTGTGTATTAAACTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746435" ref_strand="+" ref_description="SGN-E746435 [GI|47105019]">
      <seq>gaataccaagaagcacaaaaaaggttcttgattattttttttttattagacagtaaaataaaagtacaatattgctaaacctaaggagcaaaggaaaaaccctagaatagaagctcacttttctcctcaagatcgaagtcggatcaaatcgcctccaacaatgtctgccatgatgcaacctcagatcatattgcttaaggaagggacagacacgtctcaggggaaggcacagttggtgagcaacataaatgcatgtatggctgtggctgatgtggtgcgtaccacccttggtcctaggggtatggacaagttgatccacgacgataaaggaaacaccactatttcaaatgatggtgccactataatgaagcttctagatataattcatcctgcagcaaaaatacttgttgacatcgccaagtctcaagactctgaggttggtgatggaaccactacagttgttctgcttgcaggagaatttttaaaggaagccaagccttttgtcgaagagggtgtccaccctcaaaatcttattcgtagttatcgaaccgcttctaatatggcaatcgagaaggtaaaagaattggctgttagcatagagggaaaaagtttggaagaaaagaaaagtctgcttgcaaagtgtgctgctacaactctgtcatcaaagctcattggaggggaaaaggaattctttgcatccatggttgtggatgctgttcttgcaatcggaactgatgataggctgaacatgatcggaattaagaaggtccctggaggtactatgcgggattctttccttgtaaatggtgttgcctttaagaagacattttcctatgctggttttgaacagcagccaaagaagtttgtaaaccccaagatacttttactgaacatagagttggagctaaaatcagaaaaagaaaatgcagagataaggctctcagatccagcgcaatatcagtcaattgttgatgcagagtggaatatcatttatgacaagttggataaatgtgtaaagagtggtgccaaagttgttttgtctagactcgctattggtgatctggccacacagtattttgcagaccgagatatattctgtgctggtcgtgtctctgaagaggatctgcagcgggtagctgctgctgctggtggaacagtgcagacaactgtgaacaatgttattgatgaggttcttggctcttgtgagatttttgaggagaagcaagttggaaatgagagattcaatatatttagtggatgtccctctggcaagaccgccactattgtccttcgtggtggagcagatcagttcattgaggaagctgagagaagcttgcatgatgctattatgattgttagaagagctgtgaaaaactctacggttgttcctggaggtggtgcaatagatatggaaataagccgtttcttgaggcaccatgctcgaacaattcaagggaaatctcagctcttcataaactcttatgcaaaagctcttgagattatcccccgtcagctatgtgacaatgctggttttgatgcaactgatgtgctgaacaagctcagacaaaaacacgctcttccgtctggtgagggtgcaccttatggagttgacattaatactggtggcatagctgattcatttgccaactttgtttgggagccagcagtcgtgaagataaatgccatcaatgcagccactgaagctgcatgcctcattctgagtgtagatgagacagtgaagaatcctaagtctgagagtgcacaaggagatgctgctgcaagtgccatgggtggtggtagagggcgtggacgtggacgtggaatgagacggcgatagatttcataagttcttttgcagattttgctatgatttttatgtagtgtttgcttttttccccatgtttgctcctcccttctgtagttctagttgtctccctcgatcaaaatgttcaaatttggacatcgattctcatatagcaaccgagaaacaatcaaaacagagctgtgttaagttcaggcaacatccagtaaactaaattatttttgttgctgtcagttttgcaatgtacgaagcctgccgctggatatataatattctgtgtattaaacttagaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="115792" stop="107025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115493" g_stop="115320" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115319" i_stop="114678" i_length="642">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114677" g_stop="114417" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="436" r_length="261" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114416" i_stop="114202" i_length="215">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114201" g_stop="114076" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="562" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="114075" i_stop="113947" i_length="129">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113946" g_stop="113743" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="766" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113742" i_stop="113109" i_length="634">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113108" g_stop="112939" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="767" r_stop="936" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="112938" i_stop="112811" i_length="128">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="112810" g_stop="112675" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="937" r_stop="1072" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="112674" i_stop="111954" i_length="721">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="111953" g_stop="111837" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1073" r_stop="1189" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="111836" i_stop="111714" i_length="123">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="111713" g_stop="111594" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1190" r_stop="1309" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="111593" i_stop="111514" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="111513" g_stop="111415" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1310" r_stop="1408" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="111414" i_stop="111333" i_length="82">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="111332" g_stop="111243" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1409" r_stop="1498" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="111242" i_stop="110412" i_length="831">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="110411" g_stop="110324" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1499" r_stop="1586" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="110323" i_stop="109843" i_length="481">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="109842" g_stop="109754" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1587" r_stop="1675" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="109753" i_stop="109596" i_length="158">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="109595" g_stop="109521" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1676" r_stop="1750" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="109520" i_stop="107686" i_length="1835">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="107685" g_stop="107324" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1751" r_stop="2112" r_length="362" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2114" polyA_stop="2128"/>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E746435" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>2111</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115493" e_stop="115320"/>
          <exon e_start="114677" e_stop="114417"/>
          <exon e_start="114201" e_stop="114076"/>
          <exon e_start="113946" e_stop="113743"/>
          <exon e_start="113108" e_stop="112939"/>
          <exon e_start="112810" e_stop="112675"/>
          <exon e_start="111953" e_stop="111837"/>
          <exon e_start="111713" e_stop="111594"/>
          <exon e_start="111513" e_stop="111415"/>
          <exon e_start="111332" e_stop="111243"/>
          <exon e_start="110411" e_stop="110324"/>
          <exon e_start="109842" e_stop="109754"/>
          <exon e_start="109595" e_stop="109521"/>
          <exon e_start="107685" e_stop="107324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATACCAAGAAGCACAAAAAAGGTTCTTGATTATTT-TTTTTTATTAGACAGTAAAATAAAAGTACAATATTGCTAAACCTAAGGAGCAAAGGAAAAACCCTAGAATAGAAGCTCACTTTTCTCCTCAAGATCGAAGTCGGATCAAATCGCCTCCAACAATGTCTGCCATGATGGTAAGCCTGCAATTATATAGTTGAAATGAGAAGCAAATCTCAGTAGAGCTGTTTAAATTTCTTAAAATGTGTCAAAAAGTGGAGTATGACTCTGTGCACTATTTCTCATGGAAATTGCTGCTAGTTTAGTGTATGTAAATAAACATACATATGTATCCAAGGTACTGGATGTGGATGCGGAGCTTGCCAACCCTGTAAATCCACCCATGGTTGTGAACTTCAGCAAAAAGCTTGCTTTTTTAACTGAGACAACTGAAATTGCAATAGTGCCTATAGTTTGTTCCTAGTAAATTCAGATTAATGTGGTAAATTTGACATTGTTGAGAGTATGAAAGGTGTTATGGTGAAGATTTTGTGTTACATGTTTAAGATCACACTTAAAGGCTCCATATTTTCTGTTGCCAGGTTTTTATACTCTCGCTAATTTGTATTAGAAGACAATTTTATTACTGCTGGAATGAAATGGGTCCAAATAGAACAGCATGAATATAGAGAAATCTATAGCCAACAACTAATTTGGAAATGAGGCACAGTTGGTTTATTTATTTGCTATATACCTATGTGGCAATGATGTATTTTTCTGGACTTCTTTTTTCTGGTCAATCAATTTCTGATCTGGTGTCGTGGCTTTTTATGTAACAGCAACCTCAGATCATATTGCTTAAGGAAGGGACAGACACGTCTCAGGGGAAGGCACAGTTGGTGAGCAACATAAATGCATGTATGGCTGTGGCTGATGTGGTGCGTACCACCCTTGGTCCTAGGGGTATGGACAAGTTGATCCACGACGATAAAGGAAACACCACTATTTCAAATGATGGTGCCACTATAATGAAGCTTCTAGATATAATTCATCCTGCAGCAAAAATACTTGTTGACATCGCCAAGTCTCAAGACTCTGAGGTATGCTGTACTTGTGTTTATGCTATTTGTTGCTATAACATCAGTTGAATAGTGTAATACTGCTAAGTCATTTCCTGTGCTTTTACTTCTAAGGTACATGAGATGCGGCTCATAAGTTGACTGTATATGCAGTCGAGACACATGAGCTTGGAAAGTTTTTTGGTTGTCCCTTCACCCCTTTTTTACTACTAGTGCCTTGTTGTCCCTCTCTGCAGGTTGGTGATGGAACCACTACAGTTGTTCTGCTTGCAGGAGAATTTTTAAAGGAAGCCAAGCCTTTTGTCGAAGAGGGTGTCCACCCTCAAAATCTTATTCGTAGTTATCGAACCGCTTCTAATATGGTAGATTTTTCCTCCTCCTGGTTGCTTGTTCCTTTTTGTCTTACCCCTTTTGGCTATATTCACTGTCCCAGGAGGGTGCAAATGGTTTGTCATCGCAGTTTATTGAGTAATTTGGTATTGATTCTGTAGGCAATCGAGAAGGTAAAAGAATTGGCTGTTAGCATAGAGGGAAAAAGTTTGGAAGAAAAGAAAAGTCTGCTTGCAAAGTGTGCTGCTACAACTCTGTCATCAAAGCTCATTGGAGGGGAAAAGGAATTCTTTGCATCCATGGTTGTGGATGCTGTTCTTGCAATCGGAACTGATGATAGGCTGAACATGATCGGAATTAAGAAGGTATACAATCTTGCAACTGGATTTTTTGTTTGTCTTCTATGAGTTCGTGGTTTCTTAATGTTGGACTTTATTATGTCGGCCTTTAGGTTCGTTTGTTGTGTCAGAAGAACCTAAAAATAGATGCTTACAAAATTTGTATTTCTGTTGTATTCCTCTTTGTACCATCTTGGTGCCTGTCAAAATAAAATCTTTACCTTATCAAATTTTGGTAGCATCTATTTTTAGGTCTATAAATATGATTTCTTTTCCCTTCACGAAAAAGACATAAACTTAGGTGGTGTAACTATTTGAGTAAGCTCTTATGAGAATCTTTACCTTATCAAAAGAAGAAAGCTCATCTTATTCAGTCAATAAGGGTTGATTTATGTGGTCTTTTCCTTATAAACAACTATTGGTTGATTTGAGTTTTAGTTAATCCCATACAAGTGGATCCTTTGATATGTTTTAGGGTATGGAAGAATAGAGTATAATATATTCATCTGTGGAAATTGAAGATAGATCTGTGAGAAAATGAAGATCATATATGCTGTGGATTACAGCTTGATTAGAGACTACAGAAAATTTTACTATTGGTTCTACGAGCTTATCTAGTATTTTCTTACCTTTTTTTTTTTGCTTTCTTTTGTATGTGTAGGTCCCTGGAGGTACTATGCGGGATTCTTTCCTTGTAAATGGTGTTGCCTTTAAGAAGACATTTTCCTATGCTGGTTTTGAACAGCAGCCAAAGAAGTTTGTAAACCCCAAGATACTTTTACTGAACATAGAGTTGGAGCTAAAATCAGAAAAAGAAAATGCAGAGATAAGGTAGTATGTTTTTGGCATACATTTTATTTTATTTGAGAATAGTTCTGTAATCTCTCCAATTCAATATTTTCTTTCATAAGTTGCACAGTTCTGAAGGTGCTTACTCCACCTAATCATCTTTTGTGTAGGCTCTCAGATCCAGCGCAATATCAGTCAATTGTTGATGCAGAGTGGAATATCATTTATGACAAGTTGGATAAATGTGTAAAGAGTGGTGCCAAAGTTGTTTTGTCTAGACTCGCTATTGGTGATCTGGCCACACAGGTTAGTAACAAACTTGCTTTATGGTCCATTCCTTTGGTTCATGATCATATCTTCACATGGATTTTTCGGAGAACTAGAATTTAGATAGATAGTAAGTAGGAACTAAAACTTGTAGCCTTATCTTTGGGGAGATCATGCCGATTTTTCTTGTGTTATGGTAGTGTACTAGTGTATTCCTACATATCTAATATGTTCTGAAGTGTCATAATATGCATAATGAACTAAAAATAGCATGTGCCTCCTCCTCATCCTTACTTTTTTGGAACTCATTGTGCCTCCTTCACCCTCTTAATTTTGGTTGGAGAGGGAGGTGTCAGTAATTTTACAACAGACCAGATCATCTATCCTAGTTTTAGAAATTGACAGAATTTCTGTGAGGGAAAGAAGTAGAAACTATATCTCCCCATCTGGTTTACCTAATTTTATCAAAAAGAAACTATAGACTCTCCACCCTGTGCAATAAAATACACTGGTGAACTTTTGATGAGGAAAAGGTTTGGTCTTGCTGTGTAATTAATGAACCCTATTAAATTTTGTAACTTGCTTGTTATTCTGCTGGTTGCTGCAAAGATATGTGGAAGTACAGTTATGGAGCTGTTGTTTTTTACTGCCATCATCTTAAGTTTACATTTCTGCCAGAATTTTCTCACTGACACTCTACTGGGCTTTAGGAGATTATTGTGAAGATTATGACTGATATTCTTGTCTTTTATCTGCACAGTATTTTGCAGACCGAGATATATTCTGTGCTGGTCGTGTCTCTGAAGAGGATCTGCAGCGGGTAGCTGCTGCTGCTGGTGGAACAGTGCAGACAACTGTGAACAATGTTATTGATGAGGTCTGGTCCTTGTCCCTGTTACCCATTGTCTTACCGGGACAACTGTACACCTTCCATAACATGGTTAGATTATAGTATTAGGTTTTGGTCGATTTTACTTTAACCAACTGGATTATTATCTAGGTTCTTGGCTCTTGTGAGATTTTTGAGGAGAAGCAAGTTGGAAATGAGAGATTCAATATATTTAGTGGATGTCCCTCTGGCAAGACCGCCACTATTGTCCTTCGTGGTGGAGCAGATCAGGTTTTTGATCACTTCAGTTATGCATATAATTGTTAATTCGATTCTTTGATCCTAATTTTCTTTTTCAATGGTCTATATAGTTCATTGAGGAAGCTGAGAGAAGCTTGCATGATGCTATTATGATTGTTAGAAGAGCTGTGAAAAACTCTACGGTTGTTCCTGGAGGTGGTGCAATAGATGTAAGCACACTCTACAACTTCCTGAGAAGATTTCTTTATGATAACAGTTGTACCTTTTGATTGATATAACACTTGGATGCAGATGGAAATAAGCCGTTTCTTGAGGCACCATGCTCGAACAATTCAAGGGAAATCTCAGCTCTTCATAAACTCTTATGCAAAAGCTCTTGAGGTAGCGATTCTTCTTTTATTTTGCTTTAACAGAGAAATGCAAGGTTAAGACTGGTATATGCTAGAAACCCTGATGATAAGAATTAGATGCTAGTCGTCCTCTCAGTCTGAAATAAATTATAGGATTGATTTTCAAACTGACAATGTGGTGTTGTATAAGTGACTTATTTTCTGTCCAAGAGTAGTTGTGAGGCAGTGCACAATGGATGTAGAGAGCAGCTGAGGGCTGTGCTTAGCATTGTCTTGTTGTATTATCCATCCTTACCACTTCTATTTTCTCTTGAAGATTTTTTTTTGTTAAAGAATGGTATTAGCACGAAGGGTGTGCTGAAAGCCCCTTTCTTTTGGAGGGCTTATGATTGGCGCTTTCCCTTTTATCAACAATTACTTTGGTGTATGTGGCCACTCTAAACTAATTTTATCAGTGGTTGAGTCTTAGACCTTCTTGAACTGTCTAATTTTATAGTTGGGTTTGTAACTTTGTATAGATCTGCTTTTGATGAAGTTATCTTTGTTGGTCAAATGTTTGTTTACCTAGGAATTGACTTGTTTGATTCCAAAAGAAACATATTGTTTGTTGTAAAACCTCTTCTTAAGCTATTGCTATTGCTCCTTTTATGTGGTATTGGATTTTTCTGAGTTTATCATTCTTAGTTGGCTAGGGCTGCCGATGCTAGTAGGTCTTTGAGATAGGCCTCAGTATTCCTTTTGTAGACGATCTCTTGATATTGCATTTTTATGGAACTTAGTCATTGTGAGATGTCTCTTATTCCTTTTTGCTCATATGTTCAATTCTGTGATACCTTACTGTTTCAACTTTGGCATAATGCAGATTATCCCCCGTCAGCTATGTGACAATGCTGGTTTTGATGCAACTGATGTGCTGAACAAGCTCAGACAAAAACACGCTCTTCCGTCTGGTATGCCTACCATTTCCCTTTGGAGGATGTATAATGATAACAGTAACTTTTTCTTTCTTAAAACAATGATAATAAGAACAGTATTAACTTTTTAGCCTTTCAAGTTTTCTAGCTACTTAGAGGGCAGTTAGTTTTTCTTGGGATGGCTCTCTGCAAAAGTTTTGGGGTTCTTTTCTTATTGTGTTCCCTTAATAATGGTACTCCTTCTGGTCCCTATTTCTGAAAGGTTCGGAGTACGAGGGTCATAGAACTTAATTTTGACTATTGGTATATGATTCTTCAAATAATTTAAAGCAAAATTTGCATATTCGAAAAGCTCAGGGGAAGTACTAGTAGTCATCCTAGTTAATGATTCAGAATATTTTTTTTTATTAAATAGTAACACCACACTTAAAATAGGAAAGGACGTAGTACCAAAAGAAAAAGGAAAAATAAAGAAAGAAATCTCATGTTCCTTAATGGTAAACACTATCCTGGGCAGGTGAGGGTGCACCTTATGGAGTTGACATTAATACTGGTGGCATAGCTGATTCATTTGCCAACTTTGTTTGGGAGCCAGCAGTCGTGAAGGTATATTTACATCCGCTGTTCTTTTTTTATTTGATAAATTTTGTTTAGCTTGTTATTAATCAATCACTCATCTTTTCTCATTTGTTTGATACCAAAGCGTCAGTTTTTCACAAGTTATTCTTGGTTCCTAAAAGTATTACAAATTCTACTTTGTCCAGATAAATGCCATCAATGCAGCCACTGAAGCTGCATGCCTCATTCTGAGTGTAGATGAGACAGTGAAGAATCCTAAGGTAATTTCGTCTTTTTTGAAACGCCAACTTCTCCCCAATTTTTCTACCATTATGGACATAATAGACAATAGGTTTCATGTATTTTTATCATCAATTTTCACATTCTCCCTTTTATTTTCTCATATTTCCTTTTGAAATTCTTCTGCGAGACAGTTTGTCAGAACTAAAAAAGAGATTCTGGTTAAGAAAGATAATTGTTATTATTGGAAATTTAAGAAATATAATTCTTTTTGTCAGAAGAGAAGAACAATGAGAATGGAGGTGAATGTGTTGAGGAAACCTTGAAACTCCTATTGTACTCCCTACACAAACTAGTAGGCAGAACAAGAACATGGAGAGGCCAACCTAAACATTATAGTCTCTTTAAGTTTTCAAAGTCTTGGAAAATATTGGTTTTGAAGAAAGGTTTTAGGAAGTGTCTTGGAAAGTGCAAAAGTTTTCAGATCTCAAATTGTGTTATCAAGTGCTTTTAGCAAAGGAAAGACTAAAGTGTATGAAACAGTGGGGCAGGTAAATGTAGTTGTAAGAGGCGGGAGGGTGACAACTTTATAGTGATTGTTAATTGAAAAATGAAATCTAAGAGAGATCGTATGTACTCTTAAAATTTGGAGATTTTTTGGCTTAGTGCATCTTTCGGATGTATGGTTACATAGGATCATTGCGCCACAATATGAATGATTTCATTGGTTCAGCAAATCATGTCATTTTGCTGCTGTTGTTATCTTTTCAATCCTGCCTTGATTTCGCTTCTTTTTAGCCGAGGGTTTGTTGGAAATAGCCTTTCTACCTCACAAAGATTCGGTTAAGGTCTGTGTATATCCTACCCTCTCCACACCTCACTTATGGGATTACATTGGGTATGTTGTTGCTGTTATTAGCAAATCAACGTCACAACTGTCAATGCATTGCAGGAATTTTACTGCCTCCCACTGTCGTACTCATAAGTTGATAGTTGCTTAGCAAGAATTGCTGGAAGAAAATAACCCAGTAATGATGCGGTAGCTCTTCTGACTTTTGTTGATTAACAGTATAACTTAAGATCGTTGTGGCCAGACCTTAGTGGTAAGGTTTGTTATTACTATGAATTTTAGGATGTATAGGGGTCAAGAATTTATCCCATTCCTCGATCTTCTAACAAAGCAAAGCGGGGAAGGAAAAAATAATAGAGATGTGGTATGGAGGGAAACTCTATATGGTGCCATTTAGCCTAAGCTGACAAGGTTATAGTAGTCTGGTCGCTCAGTGTTGCAGTCTGAGCTAGATGAGAAGAGACCGTAATGTGCAAAGTTTTGGCAAGTTCTCCTATATGTCTCACCTTTCTTTCGATAACTGAGAAATCCCTGAGGGCGAGTTGGCTCACTGTCCAAAACTCCGTGAATAATGTGCCCGTTTCTCTAGGGTTCTTCAATGTGCGGATTTTGTTTGTTGCAGGGTTTCAAAATGTGACGTGCACCTAGCCCCCACACATCACACACTTCTCTTATGTCTAGATCATAGCCTTGTGGTCTTCATATGTCTCGCAATTTTCTTCCTTTTAGAACAGTAGCTAAGGTGCTGGTTTCTTTGAGGATACCATTGCCTACTGTGGAGCGGAAAGGTATAAACTTGCACTCTACTTCTGCTGTGGTCTAAGAATTTCTGAATCTAGAAAAGTCTGATCAGTTTAAGCTAGTCTTCTTCAAGCTCACCATGTGTATCTGCAGTTTAGATGAAGTTTTGTGGATTCTTTAGGTTTGCTTATCTGGTTTCCTTTTTGCTTCTGTTGGATGTGTCCATTGAACTTGTAAGCATCCTTACCATGCGTGAAATAATTCCTATTTCCTTCCGAATTGCAGTCTGAGAGTGCACAAGGAGATGCTGCTGCAAGTGCCATGGGTGGTGGTAGAGGGCGTGGACGTGGACGTGGAATGAGACGGCGATAGATTTCATAAGTTCTTTTGCAGATTTTGCTATGATTTTTATGTAGTGTTTGCTTTTTTCCCCATGTTTGCTCCTCCCTTCTGTAGTTCTAGTTGTCTCCCTCGATCAAAATGTTCAAATTTGGACATCGATTCTCATATAGCAACCGAGAAACAATCAAAACAGAGCTGTGTTAAGTTCAGGCAACATCCAGTAAACTAAATTATTTTTGTTGCTGTCAGTTTTGCAATGTACGAAGCCTGCCGCTGGATATATAATATTCTGTGTATTAAACTTC</genome_strand>
        <mrna_strand>GAATACCAAGAAGCACAAAAAAGGTTCTTGATTATTTTTTTTTTATTAGACAGTAAAATAAAAGTACAATATTGCTAAACCTAAGGAGCAAAGGAAAAACCCTAGAATAGAAGCTCACTTTTCTCCTCAAGATCGAAGTCGGATCAAATCGCCTCCAACAATGTCTGCCATGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTCAGATCATATTGCTTAAGGAAGGGACAGACACGTCTCAGGGGAAGGCACAGTTGGTGAGCAACATAAATGCATGTATGGCTGTGGCTGATGTGGTGCGTACCACCCTTGGTCCTAGGGGTATGGACAAGTTGATCCACGACGATAAAGGAAACACCACTATTTCAAATGATGGTGCCACTATAATGAAGCTTCTAGATATAATTCATCCTGCAGCAAAAATACTTGTTGACATCGCCAAGTCTCAAGACTCTGAG.......................................................................................................................................................................................................................GTTGGTGATGGAACCACTACAGTTGTTCTGCTTGCAGGAGAATTTTTAAAGGAAGCCAAGCCTTTTGTCGAAGAGGGTGTCCACCCTCAAAATCTTATTCGTAGTTATCGAACCGCTTCTAATATG.................................................................................................................................GCAATCGAGAAGGTAAAAGAATTGGCTGTTAGCATAGAGGGAAAAAGTTTGGAAGAAAAGAAAAGTCTGCTTGCAAAGTGTGCTGCTACAACTCTGTCATCAAAGCTCATTGGAGGGGAAAAGGAATTCTTTGCATCCATGGTTGTGGATGCTGTTCTTGCAATCGGAACTGATGATAGGCTGAACATGATCGGAATTAAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCTGGAGGTACTATGCGGGATTCTTTCCTTGTAAATGGTGTTGCCTTTAAGAAGACATTTTCCTATGCTGGTTTTGAACAGCAGCCAAAGAAGTTTGTAAACCCCAAGATACTTTTACTGAACATAGAGTTGGAGCTAAAATCAGAAAAAGAAAATGCAGAGATAAG................................................................................................................................GCTCTCAGATCCAGCGCAATATCAGTCAATTGTTGATGCAGAGTGGAATATCATTTATGACAAGTTGGATAAATGTGTAAAGAGTGGTGCCAAAGTTGTTTTGTCTAGACTCGCTATTGGTGATCTGGCCACACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTTGCAGACCGAGATATATTCTGTGCTGGTCGTGTCTCTGAAGAGGATCTGCAGCGGGTAGCTGCTGCTGCTGGTGGAACAGTGCAGACAACTGTGAACAATGTTATTGATGAG...........................................................................................................................GTTCTTGGCTCTTGTGAGATTTTTGAGGAGAAGCAAGTTGGAAATGAGAGATTCAATATATTTAGTGGATGTCCCTCTGGCAAGACCGCCACTATTGTCCTTCGTGGTGGAGCAGATCAG................................................................................TTCATTGAGGAAGCTGAGAGAAGCTTGCATGATGCTATTATGATTGTTAGAAGAGCTGTGAAAAACTCTACGGTTGTTCCTGGAGGTGGTGCAATAGAT..................................................................................ATGGAAATAAGCCGTTTCTTGAGGCACCATGCTCGAACAATTCAAGGGAAATCTCAGCTCTTCATAAACTCTTATGCAAAAGCTCTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCCCCGTCAGCTATGTGACAATGCTGGTTTTGATGCAACTGATGTGCTGAACAAGCTCAGACAAAAACACGCTCTTCCGTCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGTGCACCTTATGGAGTTGACATTAATACTGGTGGCATAGCTGATTCATTTGCCAACTTTGTTTGGGAGCCAGCAGTCGTGAAG..............................................................................................................................................................ATAAATGCCATCAATGCAGCCACTGAAGCTGCATGCCTCATTCTGAGTGTAGATGAGACAGTGAAGAATCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGAGAGTGCACAAGGAGATGCTGCTGCAAGTGCCATGGGTGGTGGTAGAGGGCGTGGACGTGGACGTGGAATGAGACGGCGATAGATTTCATAAGTTCTTTTGCAGATTTTGCTATGATTTTTATGTAGTGTTTGCTTTTTTCCCCATGTTTGCTCCTCCCTTCTGTAGTTCTAGTTGTCTCCCTCGATCAAAATGTTCAAATTTGGACATCGATTCTCATATAGCAACCGAGAAACAATCAAAACAGAGCTGTGTTAAGTTCAGGCAACATCCAGTAAACTAAATTATTTTTGTTGCTGTCAGTTTTGCAATGTACGAAGCCTGCCGCTGGATATATAATATTCTGTGTATTAAACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E598421" ref_strand="+" ref_description="SGN-E598421 [74093]">
      <seq>catgggtggtggtagagggcgtggacgtggacgtggaatgaggcggcgatagatttcacaagttcttttgcagattttgctatgatttttatgtagtgtttgctttttttgcattgtttgctcctcccttctgtagttctagttgtctccctcgatcaaaatgttcaaatttgggcatggattctcatatagcaacagaaaacaatcaaaacagagttgtgttaagttcaggcaacatccagtgaactaaatcatttttgctgctgtcagttgtgcaatgtacgaagcctgccgttggatatataatattctgtgtattaaacttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="107950" stop="107023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107650" g_stop="107324" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E598421" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E598421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107650" e_stop="107324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGGTGGTGGTAGAGGGCGTGGACGTGGACGTGGAATGAGACGGCGATAGATTTCATAAGTTCTTTTGCAGATTTTGCTATGATTTTTATGTAGTGTTTGCTTTTTTCCCCATGTTTGCTCCTCCCTTCTGTAGTTCTAGTTGTCTCCCTCGATCAAAATGTTCAAATTTGGACATCGATTCTCATATAGCAACCGAGAAACAATCAAAACAGAGCTGTGTTAAGTTCAGGCAACATCCAGTAAACTAAATTATTTTTGTTGCTGTCAGTTTTGCAATGTACGAAGCCTGCCGCTGGATATATAATATTCTGTGTATTAAACTTC</genome_strand>
        <mrna_strand>CATGGGTGGTGGTAGAGGGCGTGGACGTGGACGTGGAATGAGGCGGCGATAGATTTCACAAGTTCTTTTGCAGATTTTGCTATGATTTTTATGTAGTGTTTGCTTTTTTTGCATTGTTTGCTCCTCCCTTCTGTAGTTCTAGTTGTCTCCCTCGATCAAAATGTTCAAATTTGGGCATGGATTCTCATATAGCAACAGA-AAACAATCAAAACAGAGTTGTGTTAAGTTCAGGCAACATCCAGTGAACTAAATCATTTTTGCTGCTGTCAGTTGTGCAATGTACGAAGCCTGCCGTTGGATATATAATATTCTGTGTATTAAACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E593586" ref_strand="+" ref_description="SGN-E593586 [36820]">
      <seq>agatttcacaagttcttttgcagattttgctatgatttttatgtagtgtttgctttttttgcattgtttgctcctcccttctgtagttctagttgtctccctcgnatcaaaatgttcaaatttgggcatggattctcatatagcaacagaaaacaatcaaaacagagttgtgttaagttcaggcaacatccagtgaactaaatcatttttgctgctgtcagttgtgcaatgtacgaagcctgccgttggatatataatattctgtgtattaaacttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="107900" stop="107023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107600" g_stop="107324" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E593586" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>277</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E593586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107600" e_stop="107324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTCATAAGTTCTTTTGCAGATTTTGCTATGATTTTTATGTAGTGTTTGCTTTTTTCCCCATGTTTGCTCCTCCCTTCTGTAGTTCTAGTTGTCTCCCTCG-ATCAAAATGTTCAAATTTGGACATCGATTCTCATATAGCAACCGAGAAACAATCAAAACAGAGCTGTGTTAAGTTCAGGCAACATCCAGTAAACTAAATTATTTTTGTTGCTGTCAGTTTTGCAATGTACGAAGCCTGCCGCTGGATATATAATATTCTGTGTATTAAACTTC</genome_strand>
        <mrna_strand>AGATTTCACAAGTTCTTTTGCAGATTTTGCTATGATTTTTATGTAGTGTTTGCTTTTTTTGCATTGTTTGCTCCTCCCTTCTGTAGTTCTAGTTGTCTCCCTCGNATCAAAATGTTCAAATTTGGGCATGGATTCTCATATAGCAACAGA-AAACAATCAAAACAGAGTTGTGTTAAGTTCAGGCAACATCCAGTGAACTAAATCATTTTTGCTGCTGTCAGTTGTGCAATGTACGAAGCCTGCCGTTGGATATATAATATTCTGTGTATTAAACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E464956" ref_strand="+" ref_description="SGN-E464956 [cPRO-19-N5]">
      <seq>gagattatcccccgtcagctatgtgacaatgctggttttgatgcaactgatgtgctgaacaagctcagacaaaaacacgctcttccgtctggtgagggtgcaccttatggagtcgacattaatactggtggcatagctgattcatttgccaactttgtttgggagccagcagtcgtgaagataaatgccatcaatgcagccactgaagcagcatgcctcattctgagtgtagatgagacagtgaagaatcctaagtctgagagtgcacaaggagatgctgctgcaagtgccatgggtggtggtagagggcgtggacgtggacgtggaatgaggcggcgatagatttcacaagttcttttgcagattttgctatgatttttatgtagtgtttgctttttttgcattgtttgctcctcccttctgtagttctagttgtctccctcggatcaaaatgttcaaatttgggcacggattctcatatagcaaccgaaaacaattaaaacagagttgtgttaagttcaggcaacatccagtgaactaaatcatttttgctgctgtcagttgtgcaatgtacgaagcctaccggtggatatataatattctgtggattaaaccttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="110713" stop="107023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110414" g_stop="110324" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110323" i_stop="109843" i_length="481">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109842" g_stop="109754" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="180" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109753" i_stop="109596" i_length="158">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109595" g_stop="109521" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="255" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109520" i_stop="107686" i_length="1835">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107685" g_stop="107327" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="614" r_length="359" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E464956" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E464956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110414" e_stop="110324"/>
          <exon e_start="109842" e_stop="109754"/>
          <exon e_start="109595" e_stop="109521"/>
          <exon e_start="107685" e_stop="107327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATTATCCCCCGTCAGCTATGTGACAATGCTGGTTTTGATGCAACTGATGTGCTGAACAAGCTCAGACAAAAACACGCTCTTCCGTCTGGTATGCCTACCATTTCCCTTTGGAGGATGTATAATGATAACAGTAACTTTTTCTTTCTTAAAACAATGATAATAAGAACAGTATTAACTTTTTAGCCTTTCAAGTTTTCTAGCTACTTAGAGGGCAGTTAGTTTTTCTTGGGATGGCTCTCTGCAAAAGTTTTGGGGTTCTTTTCTTATTGTGTTCCCTTAATAATGGTACTCCTTCTGGTCCCTATTTCTGAAAGGTTCGGAGTACGAGGGTCATAGAACTTAATTTTGACTATTGGTATATGATTCTTCAAATAATTTAAAGCAAAATTTGCATATTCGAAAAGCTCAGGGGAAGTACTAGTAGTCATCCTAGTTAATGATTCAGAATATTTTTTTTTATTAAATAGTAACACCACACTTAAAATAGGAAAGGACGTAGTACCAAAAGAAAAAGGAAAAATAAAGAAAGAAATCTCATGTTCCTTAATGGTAAACACTATCCTGGGCAGGTGAGGGTGCACCTTATGGAGTTGACATTAATACTGGTGGCATAGCTGATTCATTTGCCAACTTTGTTTGGGAGCCAGCAGTCGTGAAGGTATATTTACATCCGCTGTTCTTTTTTTATTTGATAAATTTTGTTTAGCTTGTTATTAATCAATCACTCATCTTTTCTCATTTGTTTGATACCAAAGCGTCAGTTTTTCACAAGTTATTCTTGGTTCCTAAAAGTATTACAAATTCTACTTTGTCCAGATAAATGCCATCAATGCAGCCACTGAAGCTGCATGCCTCATTCTGAGTGTAGATGAGACAGTGAAGAATCCTAAGGTAATTTCGTCTTTTTTGAAACGCCAACTTCTCCCCAATTTTTCTACCATTATGGACATAATAGACAATAGGTTTCATGTATTTTTATCATCAATTTTCACATTCTCCCTTTTATTTTCTCATATTTCCTTTTGAAATTCTTCTGCGAGACAGTTTGTCAGAACTAAAAAAGAGATTCTGGTTAAGAAAGATAATTGTTATTATTGGAAATTTAAGAAATATAATTCTTTTTGTCAGAAGAGAAGAACAATGAGAATGGAGGTGAATGTGTTGAGGAAACCTTGAAACTCCTATTGTACTCCCTACACAAACTAGTAGGCAGAACAAGAACATGGAGAGGCCAACCTAAACATTATAGTCTCTTTAAGTTTTCAAAGTCTTGGAAAATATTGGTTTTGAAGAAAGGTTTTAGGAAGTGTCTTGGAAAGTGCAAAAGTTTTCAGATCTCAAATTGTGTTATCAAGTGCTTTTAGCAAAGGAAAGACTAAAGTGTATGAAACAGTGGGGCAGGTAAATGTAGTTGTAAGAGGCGGGAGGGTGACAACTTTATAGTGATTGTTAATTGAAAAATGAAATCTAAGAGAGATCGTATGTACTCTTAAAATTTGGAGATTTTTTGGCTTAGTGCATCTTTCGGATGTATGGTTACATAGGATCATTGCGCCACAATATGAATGATTTCATTGGTTCAGCAAATCATGTCATTTTGCTGCTGTTGTTATCTTTTCAATCCTGCCTTGATTTCGCTTCTTTTTAGCCGAGGGTTTGTTGGAAATAGCCTTTCTACCTCACAAAGATTCGGTTAAGGTCTGTGTATATCCTACCCTCTCCACACCTCACTTATGGGATTACATTGGGTATGTTGTTGCTGTTATTAGCAAATCAACGTCACAACTGTCAATGCATTGCAGGAATTTTACTGCCTCCCACTGTCGTACTCATAAGTTGATAGTTGCTTAGCAAGAATTGCTGGAAGAAAATAACCCAGTAATGATGCGGTAGCTCTTCTGACTTTTGTTGATTAACAGTATAACTTAAGATCGTTGTGGCCAGACCTTAGTGGTAAGGTTTGTTATTACTATGAATTTTAGGATGTATAGGGGTCAAGAATTTATCCCATTCCTCGATCTTCTAACAAAGCAAAGCGGGGAAGGAAAAAATAATAGAGATGTGGTATGGAGGGAAACTCTATATGGTGCCATTTAGCCTAAGCTGACAAGGTTATAGTAGTCTGGTCGCTCAGTGTTGCAGTCTGAGCTAGATGAGAAGAGACCGTAATGTGCAAAGTTTTGGCAAGTTCTCCTATATGTCTCACCTTTCTTTCGATAACTGAGAAATCCCTGAGGGCGAGTTGGCTCACTGTCCAAAACTCCGTGAATAATGTGCCCGTTTCTCTAGGGTTCTTCAATGTGCGGATTTTGTTTGTTGCAGGGTTTCAAAATGTGACGTGCACCTAGCCCCCACACATCACACACTTCTCTTATGTCTAGATCATAGCCTTGTGGTCTTCATATGTCTCGCAATTTTCTTCCTTTTAGAACAGTAGCTAAGGTGCTGGTTTCTTTGAGGATACCATTGCCTACTGTGGAGCGGAAAGGTATAAACTTGCACTCTACTTCTGCTGTGGTCTAAGAATTTCTGAATCTAGAAAAGTCTGATCAGTTTAAGCTAGTCTTCTTCAAGCTCACCATGTGTATCTGCAGTTTAGATGAAGTTTTGTGGATTCTTTAGGTTTGCTTATCTGGTTTCCTTTTTGCTTCTGTTGGATGTGTCCATTGAACTTGTAAGCATCCTTACCATGCGTGAAATAATTCCTATTTCCTTCCGAATTGCAGTCTGAGAGTGCACAAGGAGATGCTGCTGCAAGTGCCATGGGTGGTGGTAGAGGGCGTGGACGTGGACGTGGAATGAGACGGCGATAGATTTCATAAGTTCTTTTGCAGATTTTGCTATGATTTTTATGTAGTGTTTGCTTTTTTCCCCATGTTTGCTCCTCCCTTCTGTAGTTCTAGTTGTCTCCCTC-GATCAAAATGTTCAAATTTGGACATCGATTCTCATATAGCAACCGAGAAACAATCAAAACAGAGCTGTGTTAAGTTCAGGCAACATCCAGTAAACTAAATTATTTTTGTTGCTGTCAGTTTTGCAATGTACGAAGCCTGCCGCTGGATATATAATATTCTGTGTATTAAAC</genome_strand>
        <mrna_strand>GAGATTATCCCCCGTCAGCTATGTGACAATGCTGGTTTTGATGCAACTGATGTGCTGAACAAGCTCAGACAAAAACACGCTCTTCCGTCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGTGCACCTTATGGAGTCGACATTAATACTGGTGGCATAGCTGATTCATTTGCCAACTTTGTTTGGGAGCCAGCAGTCGTGAAG..............................................................................................................................................................ATAAATGCCATCAATGCAGCCACTGAAGCAGCATGCCTCATTCTGAGTGTAGATGAGACAGTGAAGAATCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGAGAGTGCACAAGGAGATGCTGCTGCAAGTGCCATGGGTGGTGGTAGAGGGCGTGGACGTGGACGTGGAATGAGGCGGCGATAGATTTCACAAGTTCTTTTGCAGATTTTGCTATGATTTTTATGTAGTGTTTGCTTTTTTTGCATTGTTTGCTCCTCCCTTCTGTAGTTCTAGTTGTCTCCCTCGGATCAAAATGTTCAAATTTGGGCACGGATTCTCATATAGCAACCGA-AAACAATTAAAACAGAGTTGTGTTAAGTTCAGGCAACATCCAGTGAACTAAATCATTTTTGCTGCTGTCAGTTGTGCAATGTACGAAGCCTACCGGTGGATATATAATATTCTGTGGATTAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324786" ref_strand="+" ref_description="SGN-E324786 [cTOC-8-I6]">
      <seq>tggaaataagccgtttcttgaggcaccatgctcgaacaatggaagggaaatctcagctcttcataaactcttatgcaaaagctcttgagattatcccccgtcagctatgtgacaatgctggttttgatgcaactgatgtgctgaacaagctcagacaaaaacacgctcttccgtctggtgagggtgcaccttatggagttgacattaatactggtggcatagctgattcatttgccaactttgtttgggagccagcagtcgtgaagataaatgccatcaatgcagccactgaagctgcatgcctcattctgagtgtagatgagacagtgaagaatcctaagtctgagagtgcacaaggagatgctgctgcaagtgccatgggtggtggtagagggcgtggacgtggacgtggaatgagacggcgatagatttcataagttcttttgcagattttgctatgatttttatgtagtgtttgcttttttccccatgtttgctcctcccttctgtagttctagttgtctccctcgatcaaaatgttcaaatttggacatcgattctcatatagcaaccgaaaaacaatcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="111631" stop="107139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111331" g_stop="111243" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111242" i_stop="110412" i_length="831">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110411" g_stop="110324" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="177" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110323" i_stop="109843" i_length="481">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109842" g_stop="109754" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="266" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109753" i_stop="109596" i_length="158">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109595" g_stop="109521" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="341" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="109520" i_stop="107686" i_length="1835">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107685" g_stop="107439" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="588" r_length="247" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E324786" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111331" e_stop="111243"/>
          <exon e_start="110411" e_stop="110324"/>
          <exon e_start="109842" e_stop="109754"/>
          <exon e_start="109595" e_stop="109521"/>
          <exon e_start="107685" e_stop="107439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAATAAGCCGTTTCTTGAGGCACCATGCTCGAACAATTCAAGGGAAATCTCAGCTCTTCATAAACTCTTATGCAAAAGCTCTTGAGGTAGCGATTCTTCTTTTATTTTGCTTTAACAGAGAAATGCAAGGTTAAGACTGGTATATGCTAGAAACCCTGATGATAAGAATTAGATGCTAGTCGTCCTCTCAGTCTGAAATAAATTATAGGATTGATTTTCAAACTGACAATGTGGTGTTGTATAAGTGACTTATTTTCTGTCCAAGAGTAGTTGTGAGGCAGTGCACAATGGATGTAGAGAGCAGCTGAGGGCTGTGCTTAGCATTGTCTTGTTGTATTATCCATCCTTACCACTTCTATTTTCTCTTGAAGATTTTTTTTTGTTAAAGAATGGTATTAGCACGAAGGGTGTGCTGAAAGCCCCTTTCTTTTGGAGGGCTTATGATTGGCGCTTTCCCTTTTATCAACAATTACTTTGGTGTATGTGGCCACTCTAAACTAATTTTATCAGTGGTTGAGTCTTAGACCTTCTTGAACTGTCTAATTTTATAGTTGGGTTTGTAACTTTGTATAGATCTGCTTTTGATGAAGTTATCTTTGTTGGTCAAATGTTTGTTTACCTAGGAATTGACTTGTTTGATTCCAAAAGAAACATATTGTTTGTTGTAAAACCTCTTCTTAAGCTATTGCTATTGCTCCTTTTATGTGGTATTGGATTTTTCTGAGTTTATCATTCTTAGTTGGCTAGGGCTGCCGATGCTAGTAGGTCTTTGAGATAGGCCTCAGTATTCCTTTTGTAGACGATCTCTTGATATTGCATTTTTATGGAACTTAGTCATTGTGAGATGTCTCTTATTCCTTTTTGCTCATATGTTCAATTCTGTGATACCTTACTGTTTCAACTTTGGCATAATGCAGATTATCCCCCGTCAGCTATGTGACAATGCTGGTTTTGATGCAACTGATGTGCTGAACAAGCTCAGACAAAAACACGCTCTTCCGTCTGGTATGCCTACCATTTCCCTTTGGAGGATGTATAATGATAACAGTAACTTTTTCTTTCTTAAAACAATGATAATAAGAACAGTATTAACTTTTTAGCCTTTCAAGTTTTCTAGCTACTTAGAGGGCAGTTAGTTTTTCTTGGGATGGCTCTCTGCAAAAGTTTTGGGGTTCTTTTCTTATTGTGTTCCCTTAATAATGGTACTCCTTCTGGTCCCTATTTCTGAAAGGTTCGGAGTACGAGGGTCATAGAACTTAATTTTGACTATTGGTATATGATTCTTCAAATAATTTAAAGCAAAATTTGCATATTCGAAAAGCTCAGGGGAAGTACTAGTAGTCATCCTAGTTAATGATTCAGAATATTTTTTTTTATTAAATAGTAACACCACACTTAAAATAGGAAAGGACGTAGTACCAAAAGAAAAAGGAAAAATAAAGAAAGAAATCTCATGTTCCTTAATGGTAAACACTATCCTGGGCAGGTGAGGGTGCACCTTATGGAGTTGACATTAATACTGGTGGCATAGCTGATTCATTTGCCAACTTTGTTTGGGAGCCAGCAGTCGTGAAGGTATATTTACATCCGCTGTTCTTTTTTTATTTGATAAATTTTGTTTAGCTTGTTATTAATCAATCACTCATCTTTTCTCATTTGTTTGATACCAAAGCGTCAGTTTTTCACAAGTTATTCTTGGTTCCTAAAAGTATTACAAATTCTACTTTGTCCAGATAAATGCCATCAATGCAGCCACTGAAGCTGCATGCCTCATTCTGAGTGTAGATGAGACAGTGAAGAATCCTAAGGTAATTTCGTCTTTTTTGAAACGCCAACTTCTCCCCAATTTTTCTACCATTATGGACATAATAGACAATAGGTTTCATGTATTTTTATCATCAATTTTCACATTCTCCCTTTTATTTTCTCATATTTCCTTTTGAAATTCTTCTGCGAGACAGTTTGTCAGAACTAAAAAAGAGATTCTGGTTAAGAAAGATAATTGTTATTATTGGAAATTTAAGAAATATAATTCTTTTTGTCAGAAGAGAAGAACAATGAGAATGGAGGTGAATGTGTTGAGGAAACCTTGAAACTCCTATTGTACTCCCTACACAAACTAGTAGGCAGAACAAGAACATGGAGAGGCCAACCTAAACATTATAGTCTCTTTAAGTTTTCAAAGTCTTGGAAAATATTGGTTTTGAAGAAAGGTTTTAGGAAGTGTCTTGGAAAGTGCAAAAGTTTTCAGATCTCAAATTGTGTTATCAAGTGCTTTTAGCAAAGGAAAGACTAAAGTGTATGAAACAGTGGGGCAGGTAAATGTAGTTGTAAGAGGCGGGAGGGTGACAACTTTATAGTGATTGTTAATTGAAAAATGAAATCTAAGAGAGATCGTATGTACTCTTAAAATTTGGAGATTTTTTGGCTTAGTGCATCTTTCGGATGTATGGTTACATAGGATCATTGCGCCACAATATGAATGATTTCATTGGTTCAGCAAATCATGTCATTTTGCTGCTGTTGTTATCTTTTCAATCCTGCCTTGATTTCGCTTCTTTTTAGCCGAGGGTTTGTTGGAAATAGCCTTTCTACCTCACAAAGATTCGGTTAAGGTCTGTGTATATCCTACCCTCTCCACACCTCACTTATGGGATTACATTGGGTATGTTGTTGCTGTTATTAGCAAATCAACGTCACAACTGTCAATGCATTGCAGGAATTTTACTGCCTCCCACTGTCGTACTCATAAGTTGATAGTTGCTTAGCAAGAATTGCTGGAAGAAAATAACCCAGTAATGATGCGGTAGCTCTTCTGACTTTTGTTGATTAACAGTATAACTTAAGATCGTTGTGGCCAGACCTTAGTGGTAAGGTTTGTTATTACTATGAATTTTAGGATGTATAGGGGTCAAGAATTTATCCCATTCCTCGATCTTCTAACAAAGCAAAGCGGGGAAGGAAAAAATAATAGAGATGTGGTATGGAGGGAAACTCTATATGGTGCCATTTAGCCTAAGCTGACAAGGTTATAGTAGTCTGGTCGCTCAGTGTTGCAGTCTGAGCTAGATGAGAAGAGACCGTAATGTGCAAAGTTTTGGCAAGTTCTCCTATATGTCTCACCTTTCTTTCGATAACTGAGAAATCCCTGAGGGCGAGTTGGCTCACTGTCCAAAACTCCGTGAATAATGTGCCCGTTTCTCTAGGGTTCTTCAATGTGCGGATTTTGTTTGTTGCAGGGTTTCAAAATGTGACGTGCACCTAGCCCCCACACATCACACACTTCTCTTATGTCTAGATCATAGCCTTGTGGTCTTCATATGTCTCGCAATTTTCTTCCTTTTAGAACAGTAGCTAAGGTGCTGGTTTCTTTGAGGATACCATTGCCTACTGTGGAGCGGAAAGGTATAAACTTGCACTCTACTTCTGCTGTGGTCTAAGAATTTCTGAATCTAGAAAAGTCTGATCAGTTTAAGCTAGTCTTCTTCAAGCTCACCATGTGTATCTGCAGTTTAGATGAAGTTTTGTGGATTCTTTAGGTTTGCTTATCTGGTTTCCTTTTTGCTTCTGTTGGATGTGTCCATTGAACTTGTAAGCATCCTTACCATGCGTGAAATAATTCCTATTTCCTTCCGAATTGCAGTCTGAGAGTGCACAAGGAGATGCTGCTGCAAGTGCCATGGGTGGTGGTAGAGGGCGTGGACGTGGACGTGGAATGAGACGGCGATAGATTTCATAAGTTCTTTTGCAGATTTTGCTATGATTTTTATGTAGTGTTTGCTTTTTTCCCCATGTTTGCTCCTCCCTTCTGTAGTTCTAGTTGTCTCCCTCGATCAAAATGTTCAAATTTGGACATCGATTCTCATATAGCAACCGAGAAACAATCAAAA</genome_strand>
        <mrna_strand>TGGAAATAAGCCGTTTCTTGAGGCACCATGCTCGAACAATGGAAGGGAAATCTCAGCTCTTCATAAACTCTTATGCAAAAGCTCTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCCCCGTCAGCTATGTGACAATGCTGGTTTTGATGCAACTGATGTGCTGAACAAGCTCAGACAAAAACACGCTCTTCCGTCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGGTGCACCTTATGGAGTTGACATTAATACTGGTGGCATAGCTGATTCATTTGCCAACTTTGTTTGGGAGCCAGCAGTCGTGAAG..............................................................................................................................................................ATAAATGCCATCAATGCAGCCACTGAAGCTGCATGCCTCATTCTGAGTGTAGATGAGACAGTGAAGAATCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGAGAGTGCACAAGGAGATGCTGCTGCAAGTGCCATGGGTGGTGGTAGAGGGCGTGGACGTGGACGTGGAATGAGACGGCGATAGATTTCATAAGTTCTTTTGCAGATTTTGCTATGATTTTTATGTAGTGTTTGCTTTTTTCCCCATGTTTGCTCCTCCCTTCTGTAGTTCTAGTTGTCTCCCTCGATCAAAATGTTCAAATTTGGACATCGATTCTCATATAGCAACCGAAAAACAATCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E402048" ref_strand="+" ref_description="SGN-E402048 [PPC-6-M7]">
      <seq>agagtggtgccaaagttgttttgtctagactcgctattggtgatctggccacacagtattttgcagaccgagatatattttgtgctggtcgtgtctctgaagaggatctgcagcgggtagcggctgccgctggtggaacagtgcagacaactgtgaacaatgttattgatgaggttcttggctcttgtgagatttttgaggagaagcaagttggaaatgagagattcaatatatttagtggatgtccctcgggcaagaccgccactattgtccttcgtggtggagcagatcagttcattgaggaagctgagagaagcttgcatgatgctattatgattgttcgaagggctgtgaaaaactctacggttgttcctggaggtggtgcgatagatatggaaataagccgtttcttgaggcaccatgctcgaacaattcaagggaaatctcagctcttcataaactcttatgcaaaagctcttgagattatcccccgtcagctatgtgacaatgctgggtttgatgcaactgatgtgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113030" stop="110058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112730" g_stop="112675" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112674" i_stop="111954" i_length="721">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111953" g_stop="111837" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="173" r_length="117" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111836" i_stop="111714" i_length="123">
            <donor d_prob="0.957" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111713" g_stop="111594" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="293" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111593" i_stop="111514" i_length="80">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111513" g_stop="111415" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="392" r_length="99" r_score="0.970"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111414" i_stop="111333" i_length="82">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111332" g_stop="111243" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="482" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111242" i_stop="110412" i_length="831">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="110411" g_stop="110358" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="536" r_length="54" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E402048" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E402048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112730" e_stop="112675"/>
          <exon e_start="111953" e_stop="111837"/>
          <exon e_start="111713" e_stop="111594"/>
          <exon e_start="111513" e_stop="111415"/>
          <exon e_start="111332" e_stop="111243"/>
          <exon e_start="110411" e_stop="110358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTGGTGCCAAAGTTGTTTTGTCTAGACTCGCTATTGGTGATCTGGCCACACAGGTTAGTAACAAACTTGCTTTATGGTCCATTCCTTTGGTTCATGATCATATCTTCACATGGATTTTTCGGAGAACTAGAATTTAGATAGATAGTAAGTAGGAACTAAAACTTGTAGCCTTATCTTTGGGGAGATCATGCCGATTTTTCTTGTGTTATGGTAGTGTACTAGTGTATTCCTACATATCTAATATGTTCTGAAGTGTCATAATATGCATAATGAACTAAAAATAGCATGTGCCTCCTCCTCATCCTTACTTTTTTGGAACTCATTGTGCCTCCTTCACCCTCTTAATTTTGGTTGGAGAGGGAGGTGTCAGTAATTTTACAACAGACCAGATCATCTATCCTAGTTTTAGAAATTGACAGAATTTCTGTGAGGGAAAGAAGTAGAAACTATATCTCCCCATCTGGTTTACCTAATTTTATCAAAAAGAAACTATAGACTCTCCACCCTGTGCAATAAAATACACTGGTGAACTTTTGATGAGGAAAAGGTTTGGTCTTGCTGTGTAATTAATGAACCCTATTAAATTTTGTAACTTGCTTGTTATTCTGCTGGTTGCTGCAAAGATATGTGGAAGTACAGTTATGGAGCTGTTGTTTTTTACTGCCATCATCTTAAGTTTACATTTCTGCCAGAATTTTCTCACTGACACTCTACTGGGCTTTAGGAGATTATTGTGAAGATTATGACTGATATTCTTGTCTTTTATCTGCACAGTATTTTGCAGACCGAGATATATTCTGTGCTGGTCGTGTCTCTGAAGAGGATCTGCAGCGGGTAGCTGCTGCTGCTGGTGGAACAGTGCAGACAACTGTGAACAATGTTATTGATGAGGTCTGGTCCTTGTCCCTGTTACCCATTGTCTTACCGGGACAACTGTACACCTTCCATAACATGGTTAGATTATAGTATTAGGTTTTGGTCGATTTTACTTTAACCAACTGGATTATTATCTAGGTTCTTGGCTCTTGTGAGATTTTTGAGGAGAAGCAAGTTGGAAATGAGAGATTCAATATATTTAGTGGATGTCCCTCTGGCAAGACCGCCACTATTGTCCTTCGTGGTGGAGCAGATCAGGTTTTTGATCACTTCAGTTATGCATATAATTGTTAATTCGATTCTTTGATCCTAATTTTCTTTTTCAATGGTCTATATAGTTCATTGAGGAAGCTGAGAGAAGCTTGCATGATGCTATTATGATTGTTAGAAGAGCTGTGAAAAACTCTACGGTTGTTCCTGGAGGTGGTGCAATAGATGTAAGCACACTCTACAACTTCCTGAGAAGATTTCTTTATGATAACAGTTGTACCTTTTGATTGATATAACACTTGGATGCAGATGGAAATAAGCCGTTTCTTGAGGCACCATGCTCGAACAATTCAAGGGAAATCTCAGCTCTTCATAAACTCTTATGCAAAAGCTCTTGAGGTAGCGATTCTTCTTTTATTTTGCTTTAACAGAGAAATGCAAGGTTAAGACTGGTATATGCTAGAAACCCTGATGATAAGAATTAGATGCTAGTCGTCCTCTCAGTCTGAAATAAATTATAGGATTGATTTTCAAACTGACAATGTGGTGTTGTATAAGTGACTTATTTTCTGTCCAAGAGTAGTTGTGAGGCAGTGCACAATGGATGTAGAGAGCAGCTGAGGGCTGTGCTTAGCATTGTCTTGTTGTATTATCCATCCTTACCACTTCTATTTTCTCTTGAAGATTTTTTTTTGTTAAAGAATGGTATTAGCACGAAGGGTGTGCTGAAAGCCCCTTTCTTTTGGAGGGCTTATGATTGGCGCTTTCCCTTTTATCAACAATTACTTTGGTGTATGTGGCCACTCTAAACTAATTTTATCAGTGGTTGAGTCTTAGACCTTCTTGAACTGTCTAATTTTATAGTTGGGTTTGTAACTTTGTATAGATCTGCTTTTGATGAAGTTATCTTTGTTGGTCAAATGTTTGTTTACCTAGGAATTGACTTGTTTGATTCCAAAAGAAACATATTGTTTGTTGTAAAACCTCTTCTTAAGCTATTGCTATTGCTCCTTTTATGTGGTATTGGATTTTTCTGAGTTTATCATTCTTAGTTGGCTAGGGCTGCCGATGCTAGTAGGTCTTTGAGATAGGCCTCAGTATTCCTTTTGTAGACGATCTCTTGATATTGCATTTTTATGGAACTTAGTCATTGTGAGATGTCTCTTATTCCTTTTTGCTCATATGTTCAATTCTGTGATACCTTACTGTTTCAACTTTGGCATAATGCAGATTATCCCCCGTCAGCTATGTGACAATGCTGGTTTTGATGCAACTGATGTGCTG</genome_strand>
        <mrna_strand>AGAGTGGTGCCAAAGTTGTTTTGTCTAGACTCGCTATTGGTGATCTGGCCACACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTTGCAGACCGAGATATATTTTGTGCTGGTCGTGTCTCTGAAGAGGATCTGCAGCGGGTAGCGGCTGCCGCTGGTGGAACAGTGCAGACAACTGTGAACAATGTTATTGATGAG...........................................................................................................................GTTCTTGGCTCTTGTGAGATTTTTGAGGAGAAGCAAGTTGGAAATGAGAGATTCAATATATTTAGTGGATGTCCCTCGGGCAAGACCGCCACTATTGTCCTTCGTGGTGGAGCAGATCAG................................................................................TTCATTGAGGAAGCTGAGAGAAGCTTGCATGATGCTATTATGATTGTTCGAAGGGCTGTGAAAAACTCTACGGTTGTTCCTGGAGGTGGTGCGATAGAT..................................................................................ATGGAAATAAGCCGTTTCTTGAGGCACCATGCTCGAACAATTCAAGGGAAATCTCAGCTCTTCATAAACTCTTATGCAAAAGCTCTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATCCCCCGTCAGCTATGTGACAATGCTGGGTTTGATGCAACTGATGTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347724" ref_strand="+" ref_description="SGN-E347724 [cTOF-26-O5]">
      <seq>agagataaggctctcagatccagcgcaatatcagtcaattgttgatgcagagtggaatatcatttatgacaagttggataaatgtgtaaagagtggtgccaaagttgttttgtctagactcgctattggtgatctggccacacagtattttgcagaccgagatatattctgtgctggtcgtgtctctgaagaggatctgcagcgggtagctgctgctgctggtggaacagtgcagacaactgtgaacaatgttattgatgaggttcttggctcttgtgagatttttgaggaaaaacaagttggaaatgagagattcaatatatttagtggatgtccctcttgcaagaccgccactattgtccttcgtggtggagcagatcagttcattgaggaaactgagagaagcttgcatgatgctattatgattgttagaagagctgtgaaaaactctacggttgttcctggaggtggtgcaatagatatggaaataagcccgttcttgaggcaccatgctccgacaatttaaggggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113116" stop="110981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112947" g_stop="112939" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112938" i_stop="112811" i_length="128">
            <donor d_prob="0.961" d_score="0.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112810" g_stop="112675" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="145" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112674" i_stop="111954" i_length="721">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111953" g_stop="111837" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="262" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111836" i_stop="111714" i_length="123">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111713" g_stop="111594" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="382" r_length="120" r_score="0.975"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111593" i_stop="111514" i_length="80">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111513" g_stop="111415" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="481" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111414" i_stop="111333" i_length="82">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111332" g_stop="111281" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="534" r_length="53" r_score="0.865"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E347724" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112947" e_stop="112939"/>
          <exon e_start="112810" e_stop="112675"/>
          <exon e_start="111953" e_stop="111837"/>
          <exon e_start="111713" e_stop="111594"/>
          <exon e_start="111513" e_stop="111415"/>
          <exon e_start="111332" e_stop="111281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATAAGGTAGTATGTTTTTGGCATACATTTTATTTTATTTGAGAATAGTTCTGTAATCTCTCCAATTCAATATTTTCTTTCATAAGTTGCACAGTTCTGAAGGTGCTTACTCCACCTAATCATCTTTTGTGTAGGCTCTCAGATCCAGCGCAATATCAGTCAATTGTTGATGCAGAGTGGAATATCATTTATGACAAGTTGGATAAATGTGTAAAGAGTGGTGCCAAAGTTGTTTTGTCTAGACTCGCTATTGGTGATCTGGCCACACAGGTTAGTAACAAACTTGCTTTATGGTCCATTCCTTTGGTTCATGATCATATCTTCACATGGATTTTTCGGAGAACTAGAATTTAGATAGATAGTAAGTAGGAACTAAAACTTGTAGCCTTATCTTTGGGGAGATCATGCCGATTTTTCTTGTGTTATGGTAGTGTACTAGTGTATTCCTACATATCTAATATGTTCTGAAGTGTCATAATATGCATAATGAACTAAAAATAGCATGTGCCTCCTCCTCATCCTTACTTTTTTGGAACTCATTGTGCCTCCTTCACCCTCTTAATTTTGGTTGGAGAGGGAGGTGTCAGTAATTTTACAACAGACCAGATCATCTATCCTAGTTTTAGAAATTGACAGAATTTCTGTGAGGGAAAGAAGTAGAAACTATATCTCCCCATCTGGTTTACCTAATTTTATCAAAAAGAAACTATAGACTCTCCACCCTGTGCAATAAAATACACTGGTGAACTTTTGATGAGGAAAAGGTTTGGTCTTGCTGTGTAATTAATGAACCCTATTAAATTTTGTAACTTGCTTGTTATTCTGCTGGTTGCTGCAAAGATATGTGGAAGTACAGTTATGGAGCTGTTGTTTTTTACTGCCATCATCTTAAGTTTACATTTCTGCCAGAATTTTCTCACTGACACTCTACTGGGCTTTAGGAGATTATTGTGAAGATTATGACTGATATTCTTGTCTTTTATCTGCACAGTATTTTGCAGACCGAGATATATTCTGTGCTGGTCGTGTCTCTGAAGAGGATCTGCAGCGGGTAGCTGCTGCTGCTGGTGGAACAGTGCAGACAACTGTGAACAATGTTATTGATGAGGTCTGGTCCTTGTCCCTGTTACCCATTGTCTTACCGGGACAACTGTACACCTTCCATAACATGGTTAGATTATAGTATTAGGTTTTGGTCGATTTTACTTTAACCAACTGGATTATTATCTAGGTTCTTGGCTCTTGTGAGATTTTTGAGGAGAAGCAAGTTGGAAATGAGAGATTCAATATATTTAGTGGATGTCCCTCTGGCAAGACCGCCACTATTGTCCTTCGTGGTGGAGCAGATCAGGTTTTTGATCACTTCAGTTATGCATATAATTGTTAATTCGATTCTTTGATCCTAATTTTCTTTTTCAATGGTCTATATAGTTCATTGAGGAAGCTGAGAGAAGCTTGCATGATGCTATTATGATTGTTAGAAGAGCTGTGAAAAACTCTACGGTTGTTCCTGGAGGTGGTGCAATAGATGTAAGCACACTCTACAACTTCCTGAGAAGATTTCTTTATGATAACAGTTGTACCTTTTGATTGATATAACACTTGGATGCAGATGGAAATAAGCCGTTTCTTGAGGCACCATGCTCGAACAATTCAA-GGGAAAT</genome_strand>
        <mrna_strand>AGAGATAAG................................................................................................................................GCTCTCAGATCCAGCGCAATATCAGTCAATTGTTGATGCAGAGTGGAATATCATTTATGACAAGTTGGATAAATGTGTAAAGAGTGGTGCCAAAGTTGTTTTGTCTAGACTCGCTATTGGTGATCTGGCCACACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTTGCAGACCGAGATATATTCTGTGCTGGTCGTGTCTCTGAAGAGGATCTGCAGCGGGTAGCTGCTGCTGCTGGTGGAACAGTGCAGACAACTGTGAACAATGTTATTGATGAG...........................................................................................................................GTTCTTGGCTCTTGTGAGATTTTTGAGGAAAAACAAGTTGGAAATGAGAGATTCAATATATTTAGTGGATGTCCCTCTTGCAAGACCGCCACTATTGTCCTTCGTGGTGGAGCAGATCAG................................................................................TTCATTGAGGAAACTGAGAGAAGCTTGCATGATGCTATTATGATTGTTAGAAGAGCTGTGAAAAACTCTACGGTTGTTCCTGGAGGTGGTGCAATAGAT..................................................................................ATGGAAATAAGCCCGTTCTTGAGGCACCATGCTCCGACAATTTAAGGGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E447697" ref_strand="+" ref_description="SGN-E447697 [cSTS-1-I3]">
      <seq>gaaaaagtttggaagaaaagaaaagtctgcttgcgaagtgtgctgctacaactctgtcatcaaagctcattggaggggaaaaggaattctttgcatccatggttgtggatgctgttcttgcaatcggaactgatgataggctgaacatgattggaattaagaaggtccctggaggtactatgcgggattccttccttgtaaatggtgttgcctttaagaagacattttcctatgctggttttgaacagcagccaaagaagtttgtaaaccccaagatacttttactgaacatagagttggagctaaaatcagaaaaagaaaatgcagagataaggctctcagatccagcgcaatatcagtcaattgttgatgcagagtggaatatcatttatgacaagttggataaatgtgtaaagagtggtgccaaagttgttttgtctagactcgctattggtgatctggccacacagtattttgcagaccgagatatattttgtgctggtcgtgtctctgaagaggatctgcagcgggtagcggctgccgctggtggaacagtgcagacaactgtgaacaatgttattgatgaggttcttggctcttgtgagatttttgaggagaagcaagttggaaatgagagattcaatatatttagtgggatgtccctcgggcaagaccgctactattgtccttcgtggtggagcagatcagttcattgaggaagctgagagaagcttgcatgatgctattatgattgttcgaagggctgtgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114206" stop="111151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113906" g_stop="113743" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113742" i_stop="113109" i_length="634">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113108" g_stop="112939" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="334" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112938" i_stop="112811" i_length="128">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112810" g_stop="112675" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="470" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112674" i_stop="111954" i_length="721">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111953" g_stop="111837" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="587" r_length="117" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111836" i_stop="111714" i_length="123">
            <donor d_prob="0.957" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111713" g_stop="111594" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="708" r_length="121" r_score="0.967"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111593" i_stop="111514" i_length="80">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111513" g_stop="111451" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="709" r_stop="771" r_length="63" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E447697" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E447697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113906" e_stop="113743"/>
          <exon e_start="113108" e_stop="112939"/>
          <exon e_start="112810" e_stop="112675"/>
          <exon e_start="111953" e_stop="111837"/>
          <exon e_start="111713" e_stop="111594"/>
          <exon e_start="111513" e_stop="111451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAGTTTGGAAGAAAAGAAAAGTCTGCTTGCAAAGTGTGCTGCTACAACTCTGTCATCAAAGCTCATTGGAGGGGAAAAGGAATTCTTTGCATCCATGGTTGTGGATGCTGTTCTTGCAATCGGAACTGATGATAGGCTGAACATGATCGGAATTAAGAAGGTATACAATCTTGCAACTGGATTTTTTGTTTGTCTTCTATGAGTTCGTGGTTTCTTAATGTTGGACTTTATTATGTCGGCCTTTAGGTTCGTTTGTTGTGTCAGAAGAACCTAAAAATAGATGCTTACAAAATTTGTATTTCTGTTGTATTCCTCTTTGTACCATCTTGGTGCCTGTCAAAATAAAATCTTTACCTTATCAAATTTTGGTAGCATCTATTTTTAGGTCTATAAATATGATTTCTTTTCCCTTCACGAAAAAGACATAAACTTAGGTGGTGTAACTATTTGAGTAAGCTCTTATGAGAATCTTTACCTTATCAAAAGAAGAAAGCTCATCTTATTCAGTCAATAAGGGTTGATTTATGTGGTCTTTTCCTTATAAACAACTATTGGTTGATTTGAGTTTTAGTTAATCCCATACAAGTGGATCCTTTGATATGTTTTAGGGTATGGAAGAATAGAGTATAATATATTCATCTGTGGAAATTGAAGATAGATCTGTGAGAAAATGAAGATCATATATGCTGTGGATTACAGCTTGATTAGAGACTACAGAAAATTTTACTATTGGTTCTACGAGCTTATCTAGTATTTTCTTACCTTTTTTTTTTTGCTTTCTTTTGTATGTGTAGGTCCCTGGAGGTACTATGCGGGATTCTTTCCTTGTAAATGGTGTTGCCTTTAAGAAGACATTTTCCTATGCTGGTTTTGAACAGCAGCCAAAGAAGTTTGTAAACCCCAAGATACTTTTACTGAACATAGAGTTGGAGCTAAAATCAGAAAAAGAAAATGCAGAGATAAGGTAGTATGTTTTTGGCATACATTTTATTTTATTTGAGAATAGTTCTGTAATCTCTCCAATTCAATATTTTCTTTCATAAGTTGCACAGTTCTGAAGGTGCTTACTCCACCTAATCATCTTTTGTGTAGGCTCTCAGATCCAGCGCAATATCAGTCAATTGTTGATGCAGAGTGGAATATCATTTATGACAAGTTGGATAAATGTGTAAAGAGTGGTGCCAAAGTTGTTTTGTCTAGACTCGCTATTGGTGATCTGGCCACACAGGTTAGTAACAAACTTGCTTTATGGTCCATTCCTTTGGTTCATGATCATATCTTCACATGGATTTTTCGGAGAACTAGAATTTAGATAGATAGTAAGTAGGAACTAAAACTTGTAGCCTTATCTTTGGGGAGATCATGCCGATTTTTCTTGTGTTATGGTAGTGTACTAGTGTATTCCTACATATCTAATATGTTCTGAAGTGTCATAATATGCATAATGAACTAAAAATAGCATGTGCCTCCTCCTCATCCTTACTTTTTTGGAACTCATTGTGCCTCCTTCACCCTCTTAATTTTGGTTGGAGAGGGAGGTGTCAGTAATTTTACAACAGACCAGATCATCTATCCTAGTTTTAGAAATTGACAGAATTTCTGTGAGGGAAAGAAGTAGAAACTATATCTCCCCATCTGGTTTACCTAATTTTATCAAAAAGAAACTATAGACTCTCCACCCTGTGCAATAAAATACACTGGTGAACTTTTGATGAGGAAAAGGTTTGGTCTTGCTGTGTAATTAATGAACCCTATTAAATTTTGTAACTTGCTTGTTATTCTGCTGGTTGCTGCAAAGATATGTGGAAGTACAGTTATGGAGCTGTTGTTTTTTACTGCCATCATCTTAAGTTTACATTTCTGCCAGAATTTTCTCACTGACACTCTACTGGGCTTTAGGAGATTATTGTGAAGATTATGACTGATATTCTTGTCTTTTATCTGCACAGTATTTTGCAGACCGAGATATATTCTGTGCTGGTCGTGTCTCTGAAGAGGATCTGCAGCGGGTAGCTGCTGCTGCTGGTGGAACAGTGCAGACAACTGTGAACAATGTTATTGATGAGGTCTGGTCCTTGTCCCTGTTACCCATTGTCTTACCGGGACAACTGTACACCTTCCATAACATGGTTAGATTATAGTATTAGGTTTTGGTCGATTTTACTTTAACCAACTGGATTATTATCTAGGTTCTTGGCTCTTGTGAGATTTTTGAGGAGAAGCAAGTTGGAAATGAGAGATTCAATATATTTAGT-GGATGTCCCTCTGGCAAGACCGCCACTATTGTCCTTCGTGGTGGAGCAGATCAGGTTTTTGATCACTTCAGTTATGCATATAATTGTTAATTCGATTCTTTGATCCTAATTTTCTTTTTCAATGGTCTATATAGTTCATTGAGGAAGCTGAGAGAAGCTTGCATGATGCTATTATGATTGTTAGAAGAGCTGTGAAA</genome_strand>
        <mrna_strand>GAAAAAGTTTGGAAGAAAAGAAAAGTCTGCTTGCGAAGTGTGCTGCTACAACTCTGTCATCAAAGCTCATTGGAGGGGAAAAGGAATTCTTTGCATCCATGGTTGTGGATGCTGTTCTTGCAATCGGAACTGATGATAGGCTGAACATGATTGGAATTAAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCTGGAGGTACTATGCGGGATTCCTTCCTTGTAAATGGTGTTGCCTTTAAGAAGACATTTTCCTATGCTGGTTTTGAACAGCAGCCAAAGAAGTTTGTAAACCCCAAGATACTTTTACTGAACATAGAGTTGGAGCTAAAATCAGAAAAAGAAAATGCAGAGATAAG................................................................................................................................GCTCTCAGATCCAGCGCAATATCAGTCAATTGTTGATGCAGAGTGGAATATCATTTATGACAAGTTGGATAAATGTGTAAAGAGTGGTGCCAAAGTTGTTTTGTCTAGACTCGCTATTGGTGATCTGGCCACACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTTGCAGACCGAGATATATTTTGTGCTGGTCGTGTCTCTGAAGAGGATCTGCAGCGGGTAGCGGCTGCCGCTGGTGGAACAGTGCAGACAACTGTGAACAATGTTATTGATGAG...........................................................................................................................GTTCTTGGCTCTTGTGAGATTTTTGAGGAGAAGCAAGTTGGAAATGAGAGATTCAATATATTTAGTGGGATGTCCCTCGGGCAAGACCGCTACTATTGTCCTTCGTGGTGGAGCAGATCAG................................................................................TTCATTGAGGAAGCTGAGAGAAGCTTGCATGATGCTATTATGATTGTTCGAAGGGCTGTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E425157" ref_strand="+" ref_description="SGN-E425157 [STM-44-L15]">
      <seq>gacacgtcccaagggaaggcacagttggtgagcaacataaatgcatgtatggctgtggctgatgtggtgcgtaccacccttggccctaggggtatggacaagttgatccacgacgataaaggaaacaccactatttcgaatgatggtgccactataatgaagcttctagacataattcatcctgcagcaaaaatacttgttgacattgccaagtcccaagactctgaggttggtgatggaaccactacagttgttctgcttgcaggagaatttttaaaggaagccaagccttttgtcgaagatggtgtccaccctcaaaatcttattcgtagttatcgaaccgcttctaatatggcaatcgagaaggtaaaagaattggctgttagcatagagggaaaaagtttggaagagaagaaaagtctgcagcgggtagcggctgccgctggtggaacagtgcagacaactgtgaacaatgttattgatgaggttcttggctcttgtgagatttttgaggagaagcaagttggaaatgagagattcaatatatttagtggatgtccctctggcaagaccgccactattgtccttcgtggtggagcagatcagttcatcgaggaggctgagagaagcttgcatgatgctattatgattgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114944" stop="111166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114644" g_stop="114417" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114416" i_stop="114202" i_length="215">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114201" g_stop="114076" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="354" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114075" i_stop="113947" i_length="129">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113946" g_stop="113883" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="418" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113882" i_stop="111906" i_length="1977">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111905" g_stop="111837" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="486" r_length="68" r_score="0.957"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111836" i_stop="111714" i_length="123">
            <donor d_prob="0.957" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111713" g_stop="111594" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="606" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111593" i_stop="111514" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111513" g_stop="111466" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="654" r_length="48" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E425157" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E425157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114644" e_stop="114417"/>
          <exon e_start="114201" e_stop="114076"/>
          <exon e_start="113946" e_stop="113883"/>
          <exon e_start="111905" e_stop="111837"/>
          <exon e_start="111713" e_stop="111594"/>
          <exon e_start="111513" e_stop="111466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACACGTCTCAGGGGAAGGCACAGTTGGTGAGCAACATAAATGCATGTATGGCTGTGGCTGATGTGGTGCGTACCACCCTTGGTCCTAGGGGTATGGACAAGTTGATCCACGACGATAAAGGAAACACCACTATTTCAAATGATGGTGCCACTATAATGAAGCTTCTAGATATAATTCATCCTGCAGCAAAAATACTTGTTGACATCGCCAAGTCTCAAGACTCTGAGGTATGCTGTACTTGTGTTTATGCTATTTGTTGCTATAACATCAGTTGAATAGTGTAATACTGCTAAGTCATTTCCTGTGCTTTTACTTCTAAGGTACATGAGATGCGGCTCATAAGTTGACTGTATATGCAGTCGAGACACATGAGCTTGGAAAGTTTTTTGGTTGTCCCTTCACCCCTTTTTTACTACTAGTGCCTTGTTGTCCCTCTCTGCAGGTTGGTGATGGAACCACTACAGTTGTTCTGCTTGCAGGAGAATTTTTAAAGGAAGCCAAGCCTTTTGTCGAAGAGGGTGTCCACCCTCAAAATCTTATTCGTAGTTATCGAACCGCTTCTAATATGGTAGATTTTTCCTCCTCCTGGTTGCTTGTTCCTTTTTGTCTTACCCCTTTTGGCTATATTCACTGTCCCAGGAGGGTGCAAATGGTTTGTCATCGCAGTTTATTGAGTAATTTGGTATTGATTCTGTAGGCAATCGAGAAGGTAAAAGAATTGGCTGTTAGCATAGAGGGAAAAAGTTTGGAAGAAAAGAAAAGTCTGCTTGCAAAGTGTGCTGCTACAACTCTGTCATCAAAGCTCATTGGAGGGGAAAAGGAATTCTTTGCATCCATGGTTGTGGATGCTGTTCTTGCAATCGGAACTGATGATAGGCTGAACATGATCGGAATTAAGAAGGTATACAATCTTGCAACTGGATTTTTTGTTTGTCTTCTATGAGTTCGTGGTTTCTTAATGTTGGACTTTATTATGTCGGCCTTTAGGTTCGTTTGTTGTGTCAGAAGAACCTAAAAATAGATGCTTACAAAATTTGTATTTCTGTTGTATTCCTCTTTGTACCATCTTGGTGCCTGTCAAAATAAAATCTTTACCTTATCAAATTTTGGTAGCATCTATTTTTAGGTCTATAAATATGATTTCTTTTCCCTTCACGAAAAAGACATAAACTTAGGTGGTGTAACTATTTGAGTAAGCTCTTATGAGAATCTTTACCTTATCAAAAGAAGAAAGCTCATCTTATTCAGTCAATAAGGGTTGATTTATGTGGTCTTTTCCTTATAAACAACTATTGGTTGATTTGAGTTTTAGTTAATCCCATACAAGTGGATCCTTTGATATGTTTTAGGGTATGGAAGAATAGAGTATAATATATTCATCTGTGGAAATTGAAGATAGATCTGTGAGAAAATGAAGATCATATATGCTGTGGATTACAGCTTGATTAGAGACTACAGAAAATTTTACTATTGGTTCTACGAGCTTATCTAGTATTTTCTTACCTTTTTTTTTTTGCTTTCTTTTGTATGTGTAGGTCCCTGGAGGTACTATGCGGGATTCTTTCCTTGTAAATGGTGTTGCCTTTAAGAAGACATTTTCCTATGCTGGTTTTGAACAGCAGCCAAAGAAGTTTGTAAACCCCAAGATACTTTTACTGAACATAGAGTTGGAGCTAAAATCAGAAAAAGAAAATGCAGAGATAAGGTAGTATGTTTTTGGCATACATTTTATTTTATTTGAGAATAGTTCTGTAATCTCTCCAATTCAATATTTTCTTTCATAAGTTGCACAGTTCTGAAGGTGCTTACTCCACCTAATCATCTTTTGTGTAGGCTCTCAGATCCAGCGCAATATCAGTCAATTGTTGATGCAGAGTGGAATATCATTTATGACAAGTTGGATAAATGTGTAAAGAGTGGTGCCAAAGTTGTTTTGTCTAGACTCGCTATTGGTGATCTGGCCACACAGGTTAGTAACAAACTTGCTTTATGGTCCATTCCTTTGGTTCATGATCATATCTTCACATGGATTTTTCGGAGAACTAGAATTTAGATAGATAGTAAGTAGGAACTAAAACTTGTAGCCTTATCTTTGGGGAGATCATGCCGATTTTTCTTGTGTTATGGTAGTGTACTAGTGTATTCCTACATATCTAATATGTTCTGAAGTGTCATAATATGCATAATGAACTAAAAATAGCATGTGCCTCCTCCTCATCCTTACTTTTTTGGAACTCATTGTGCCTCCTTCACCCTCTTAATTTTGGTTGGAGAGGGAGGTGTCAGTAATTTTACAACAGACCAGATCATCTATCCTAGTTTTAGAAATTGACAGAATTTCTGTGAGGGAAAGAAGTAGAAACTATATCTCCCCATCTGGTTTACCTAATTTTATCAAAAAGAAACTATAGACTCTCCACCCTGTGCAATAAAATACACTGGTGAACTTTTGATGAGGAAAAGGTTTGGTCTTGCTGTGTAATTAATGAACCCTATTAAATTTTGTAACTTGCTTGTTATTCTGCTGGTTGCTGCAAAGATATGTGGAAGTACAGTTATGGAGCTGTTGTTTTTTACTGCCATCATCTTAAGTTTACATTTCTGCCAGAATTTTCTCACTGACACTCTACTGGGCTTTAGGAGATTATTGTGAAGATTATGACTGATATTCTTGTCTTTTATCTGCACAGTATTTTGCAGACCGAGATATATTCTGTGCTGGTCGTGTCTCTGAAGAGGATCTGCAGCGGGTAGCTGCTGCTGCTGGTGGAACAGTGCAGACAACTGTGAACAATGTTATTGATGAGGTCTGGTCCTTGTCCCTGTTACCCATTGTCTTACCGGGACAACTGTACACCTTCCATAACATGGTTAGATTATAGTATTAGGTTTTGGTCGATTTTACTTTAACCAACTGGATTATTATCTAGGTTCTTGGCTCTTGTGAGATTTTTGAGGAGAAGCAAGTTGGAAATGAGAGATTCAATATATTTAGTGGATGTCCCTCTGGCAAGACCGCCACTATTGTCCTTCGTGGTGGAGCAGATCAGGTTTTTGATCACTTCAGTTATGCATATAATTGTTAATTCGATTCTTTGATCCTAATTTTCTTTTTCAATGGTCTATATAGTTCATTGAGGAAGCTGAGAGAAGCTTGCATGATGCTATTATGATTGTT</genome_strand>
        <mrna_strand>GACACGTCCCAAGGGAAGGCACAGTTGGTGAGCAACATAAATGCATGTATGGCTGTGGCTGATGTGGTGCGTACCACCCTTGGCCCTAGGGGTATGGACAAGTTGATCCACGACGATAAAGGAAACACCACTATTTCGAATGATGGTGCCACTATAATGAAGCTTCTAGACATAATTCATCCTGCAGCAAAAATACTTGTTGACATTGCCAAGTCCCAAGACTCTGAG.......................................................................................................................................................................................................................GTTGGTGATGGAACCACTACAGTTGTTCTGCTTGCAGGAGAATTTTTAAAGGAAGCCAAGCCTTTTGTCGAAGATGGTGTCCACCCTCAAAATCTTATTCGTAGTTATCGAACCGCTTCTAATATG.................................................................................................................................GCAATCGAGAAGGTAAAAGAATTGGCTGTTAGCATAGAGGGAAAAAGTTTGGAAGAGAAGAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-TCTGCAGCGGGTAGCGGCTGCCGCTGGTGGAACAGTGCAGACAACTGTGAACAATGTTATTGATGAG...........................................................................................................................GTTCTTGGCTCTTGTGAGATTTTTGAGGAGAAGCAAGTTGGAAATGAGAGATTCAATATATTTAGTGGATGTCCCTCTGGCAAGACCGCCACTATTGTCCTTCGTGGTGGAGCAGATCAG................................................................................TTCATCGAGGAGGCTGAGAGAAGCTTGCATGATGCTATTATGATTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454005" ref_strand="+" ref_description="SGN-E454005 [cSTS-21-H22]">
      <seq>tggacacgtcccaagggaaggcaccagttggtgagcaacataaatgcatgtatggctgtggctgatgtggtgcgtaccacccttggccctaggggtatggacaagttgatccacgacgataaaggaaacaccactatttcgaatgatggtgccactataatgaagcttctagacataattcatcctgcagcaaaaatacttgttgacattgccaagtcccaagactctgaggttggtgatggaaccactacagttgttctgcttgcaggagaatttttaaaggaagccaagccttttgtcgaagatggtgtccaccctcaaaatcttattcgtagttatcgaaccgcttctaatatggcaatcgagaaggtaaaagaattggctgttagcatagagggaaaaagtttggaagagaagaaaagtctgcagcgggtagcggctgccgctggtggaacagtgcagacaactgtgaacaatgttattgatgaggttcttggctcttgtgagatttttgaggagaagcaagttggaaatgagagattcaatatatttaagtggatgtccctctggcaagaccgccactattgtccttcgtggtggagccagatcagttcatcgaggaggctgagagaagcttgcatgatgctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114944" stop="111176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114646" g_stop="114417" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114416" i_stop="114202" i_length="215">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114201" g_stop="114076" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="357" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114075" i_stop="113947" i_length="129">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113946" g_stop="113883" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="421" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113882" i_stop="111906" i_length="1977">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111905" g_stop="111837" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="489" r_length="68" r_score="0.957"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111836" i_stop="111714" i_length="123">
            <donor d_prob="0.957" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111713" g_stop="111594" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="611" r_length="122" r_score="0.967"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111593" i_stop="111514" i_length="80">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111513" g_stop="111476" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="649" r_length="38" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E454005" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E454005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114646" e_stop="114417"/>
          <exon e_start="114201" e_stop="114076"/>
          <exon e_start="113946" e_stop="113883"/>
          <exon e_start="111905" e_stop="111837"/>
          <exon e_start="111713" e_stop="111594"/>
          <exon e_start="111513" e_stop="111476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGACACGTCTCAGGGGAAGGCA-CAGTTGGTGAGCAACATAAATGCATGTATGGCTGTGGCTGATGTGGTGCGTACCACCCTTGGTCCTAGGGGTATGGACAAGTTGATCCACGACGATAAAGGAAACACCACTATTTCAAATGATGGTGCCACTATAATGAAGCTTCTAGATATAATTCATCCTGCAGCAAAAATACTTGTTGACATCGCCAAGTCTCAAGACTCTGAGGTATGCTGTACTTGTGTTTATGCTATTTGTTGCTATAACATCAGTTGAATAGTGTAATACTGCTAAGTCATTTCCTGTGCTTTTACTTCTAAGGTACATGAGATGCGGCTCATAAGTTGACTGTATATGCAGTCGAGACACATGAGCTTGGAAAGTTTTTTGGTTGTCCCTTCACCCCTTTTTTACTACTAGTGCCTTGTTGTCCCTCTCTGCAGGTTGGTGATGGAACCACTACAGTTGTTCTGCTTGCAGGAGAATTTTTAAAGGAAGCCAAGCCTTTTGTCGAAGAGGGTGTCCACCCTCAAAATCTTATTCGTAGTTATCGAACCGCTTCTAATATGGTAGATTTTTCCTCCTCCTGGTTGCTTGTTCCTTTTTGTCTTACCCCTTTTGGCTATATTCACTGTCCCAGGAGGGTGCAAATGGTTTGTCATCGCAGTTTATTGAGTAATTTGGTATTGATTCTGTAGGCAATCGAGAAGGTAAAAGAATTGGCTGTTAGCATAGAGGGAAAAAGTTTGGAAGAAAAGAAAAGTCTGCTTGCAAAGTGTGCTGCTACAACTCTGTCATCAAAGCTCATTGGAGGGGAAAAGGAATTCTTTGCATCCATGGTTGTGGATGCTGTTCTTGCAATCGGAACTGATGATAGGCTGAACATGATCGGAATTAAGAAGGTATACAATCTTGCAACTGGATTTTTTGTTTGTCTTCTATGAGTTCGTGGTTTCTTAATGTTGGACTTTATTATGTCGGCCTTTAGGTTCGTTTGTTGTGTCAGAAGAACCTAAAAATAGATGCTTACAAAATTTGTATTTCTGTTGTATTCCTCTTTGTACCATCTTGGTGCCTGTCAAAATAAAATCTTTACCTTATCAAATTTTGGTAGCATCTATTTTTAGGTCTATAAATATGATTTCTTTTCCCTTCACGAAAAAGACATAAACTTAGGTGGTGTAACTATTTGAGTAAGCTCTTATGAGAATCTTTACCTTATCAAAAGAAGAAAGCTCATCTTATTCAGTCAATAAGGGTTGATTTATGTGGTCTTTTCCTTATAAACAACTATTGGTTGATTTGAGTTTTAGTTAATCCCATACAAGTGGATCCTTTGATATGTTTTAGGGTATGGAAGAATAGAGTATAATATATTCATCTGTGGAAATTGAAGATAGATCTGTGAGAAAATGAAGATCATATATGCTGTGGATTACAGCTTGATTAGAGACTACAGAAAATTTTACTATTGGTTCTACGAGCTTATCTAGTATTTTCTTACCTTTTTTTTTTTGCTTTCTTTTGTATGTGTAGGTCCCTGGAGGTACTATGCGGGATTCTTTCCTTGTAAATGGTGTTGCCTTTAAGAAGACATTTTCCTATGCTGGTTTTGAACAGCAGCCAAAGAAGTTTGTAAACCCCAAGATACTTTTACTGAACATAGAGTTGGAGCTAAAATCAGAAAAAGAAAATGCAGAGATAAGGTAGTATGTTTTTGGCATACATTTTATTTTATTTGAGAATAGTTCTGTAATCTCTCCAATTCAATATTTTCTTTCATAAGTTGCACAGTTCTGAAGGTGCTTACTCCACCTAATCATCTTTTGTGTAGGCTCTCAGATCCAGCGCAATATCAGTCAATTGTTGATGCAGAGTGGAATATCATTTATGACAAGTTGGATAAATGTGTAAAGAGTGGTGCCAAAGTTGTTTTGTCTAGACTCGCTATTGGTGATCTGGCCACACAGGTTAGTAACAAACTTGCTTTATGGTCCATTCCTTTGGTTCATGATCATATCTTCACATGGATTTTTCGGAGAACTAGAATTTAGATAGATAGTAAGTAGGAACTAAAACTTGTAGCCTTATCTTTGGGGAGATCATGCCGATTTTTCTTGTGTTATGGTAGTGTACTAGTGTATTCCTACATATCTAATATGTTCTGAAGTGTCATAATATGCATAATGAACTAAAAATAGCATGTGCCTCCTCCTCATCCTTACTTTTTTGGAACTCATTGTGCCTCCTTCACCCTCTTAATTTTGGTTGGAGAGGGAGGTGTCAGTAATTTTACAACAGACCAGATCATCTATCCTAGTTTTAGAAATTGACAGAATTTCTGTGAGGGAAAGAAGTAGAAACTATATCTCCCCATCTGGTTTACCTAATTTTATCAAAAAGAAACTATAGACTCTCCACCCTGTGCAATAAAATACACTGGTGAACTTTTGATGAGGAAAAGGTTTGGTCTTGCTGTGTAATTAATGAACCCTATTAAATTTTGTAACTTGCTTGTTATTCTGCTGGTTGCTGCAAAGATATGTGGAAGTACAGTTATGGAGCTGTTGTTTTTTACTGCCATCATCTTAAGTTTACATTTCTGCCAGAATTTTCTCACTGACACTCTACTGGGCTTTAGGAGATTATTGTGAAGATTATGACTGATATTCTTGTCTTTTATCTGCACAGTATTTTGCAGACCGAGATATATTCTGTGCTGGTCGTGTCTCTGAAGAGGATCTGCAGCGGGTAGCTGCTGCTGCTGGTGGAACAGTGCAGACAACTGTGAACAATGTTATTGATGAGGTCTGGTCCTTGTCCCTGTTACCCATTGTCTTACCGGGACAACTGTACACCTTCCATAACATGGTTAGATTATAGTATTAGGTTTTGGTCGATTTTACTTTAACCAACTGGATTATTATCTAGGTTCTTGGCTCTTGTGAGATTTTTGAGGAGAAGCAAGTTGGAAATGAGAGATTCAATATATTT-AGTGGATGTCCCTCTGGCAAGACCGCCACTATTGTCCTTCGTGGTGGAG-CAGATCAGGTTTTTGATCACTTCAGTTATGCATATAATTGTTAATTCGATTCTTTGATCCTAATTTTCTTTTTCAATGGTCTATATAGTTCATTGAGGAAGCTGAGAGAAGCTTGCATGATGCTAT</genome_strand>
        <mrna_strand>TGGACACGTCCCAAGGGAAGGCACCAGTTGGTGAGCAACATAAATGCATGTATGGCTGTGGCTGATGTGGTGCGTACCACCCTTGGCCCTAGGGGTATGGACAAGTTGATCCACGACGATAAAGGAAACACCACTATTTCGAATGATGGTGCCACTATAATGAAGCTTCTAGACATAATTCATCCTGCAGCAAAAATACTTGTTGACATTGCCAAGTCCCAAGACTCTGAG.......................................................................................................................................................................................................................GTTGGTGATGGAACCACTACAGTTGTTCTGCTTGCAGGAGAATTTTTAAAGGAAGCCAAGCCTTTTGTCGAAGATGGTGTCCACCCTCAAAATCTTATTCGTAGTTATCGAACCGCTTCTAATATG.................................................................................................................................GCAATCGAGAAGGTAAAAGAATTGGCTGTTAGCATAGAGGGAAAAAGTTTGGAAGAGAAGAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-TCTGCAGCGGGTAGCGGCTGCCGCTGGTGGAACAGTGCAGACAACTGTGAACAATGTTATTGATGAG...........................................................................................................................GTTCTTGGCTCTTGTGAGATTTTTGAGGAGAAGCAAGTTGGAAATGAGAGATTCAATATATTTAAGTGGATGTCCCTCTGGCAAGACCGCCACTATTGTCCTTCGTGGTGGAGCCAGATCAG................................................................................TTCATCGAGGAGGCTGAGAGAAGCTTGCATGATGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604584" ref_strand="+" ref_description="SGN-E604584 [74721]">
      <seq>ggaagccaagccttttgtcgaagagggtgtccaccctcaaaatccntatcgtagttatcgaaccgcttctaatatggcaatcgagaaggtaaaagaattggctgttagcatagagggaaaaagtttggaagagaagaaaagtctgcttggaaagtgtgctgctacaactctgtcatcaaagctcattggaggggaaaaggaattctttgcatccatggttgtggatgccgttcttgcaattggaactgatgataggttgaacatgatcggaattaagaaggtccctggaggtactatgcgggattccttccttgtaaatggtgttgcctttaagaagacattttcctatgctggttttgaacagcagccaaagaagtttgtaaaccccaagatacttttactgaacatagagttggagctaaaatcagaaaaagaaaatgcagagataaggctctcagatccagcgcaatatcagtcaattgttgatgcagagtggaatatcatttatggcaagttggataaatgtgtaaagagtggtgccaaagttgttttgtctagactcgctattggtgatctggccacacagtattttgcagaccgagatatattttgtgctggtcgtgtctctgaagaggatctgcagcgggtagcggctgccgctggtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114451" stop="111573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114151" g_stop="114076" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114075" i_stop="113947" i_length="129">
            <donor d_prob="0.946" d_score="0.92"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113946" g_stop="113743" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="280" r_length="204" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113742" i_stop="113109" i_length="634">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113108" g_stop="112939" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="450" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112938" i_stop="112811" i_length="128">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112810" g_stop="112675" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="586" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112674" i_stop="111954" i_length="721">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111953" g_stop="111873" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="667" r_length="81" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E604584" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E604584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114151" e_stop="114076"/>
          <exon e_start="113946" e_stop="113743"/>
          <exon e_start="113108" e_stop="112939"/>
          <exon e_start="112810" e_stop="112675"/>
          <exon e_start="111953" e_stop="111873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGCCAAGCCTTTTGTCGAAGAGGGTGTCCACCCTCAAAATCTTATTCGTAGTTATCGAACCGCTTCTAATATGGTAGATTTTTCCTCCTCCTGGTTGCTTGTTCCTTTTTGTCTTACCCCTTTTGGCTATATTCACTGTCCCAGGAGGGTGCAAATGGTTTGTCATCGCAGTTTATTGAGTAATTTGGTATTGATTCTGTAGGCAATCGAGAAGGTAAAAGAATTGGCTGTTAGCATAGAGGGAAAAAGTTTGGAAGAAAAGAAAAGTCTGCTTGCAAAGTGTGCTGCTACAACTCTGTCATCAAAGCTCATTGGAGGGGAAAAGGAATTCTTTGCATCCATGGTTGTGGATGCTGTTCTTGCAATCGGAACTGATGATAGGCTGAACATGATCGGAATTAAGAAGGTATACAATCTTGCAACTGGATTTTTTGTTTGTCTTCTATGAGTTCGTGGTTTCTTAATGTTGGACTTTATTATGTCGGCCTTTAGGTTCGTTTGTTGTGTCAGAAGAACCTAAAAATAGATGCTTACAAAATTTGTATTTCTGTTGTATTCCTCTTTGTACCATCTTGGTGCCTGTCAAAATAAAATCTTTACCTTATCAAATTTTGGTAGCATCTATTTTTAGGTCTATAAATATGATTTCTTTTCCCTTCACGAAAAAGACATAAACTTAGGTGGTGTAACTATTTGAGTAAGCTCTTATGAGAATCTTTACCTTATCAAAAGAAGAAAGCTCATCTTATTCAGTCAATAAGGGTTGATTTATGTGGTCTTTTCCTTATAAACAACTATTGGTTGATTTGAGTTTTAGTTAATCCCATACAAGTGGATCCTTTGATATGTTTTAGGGTATGGAAGAATAGAGTATAATATATTCATCTGTGGAAATTGAAGATAGATCTGTGAGAAAATGAAGATCATATATGCTGTGGATTACAGCTTGATTAGAGACTACAGAAAATTTTACTATTGGTTCTACGAGCTTATCTAGTATTTTCTTACCTTTTTTTTTTTGCTTTCTTTTGTATGTGTAGGTCCCTGGAGGTACTATGCGGGATTCTTTCCTTGTAAATGGTGTTGCCTTTAAGAAGACATTTTCCTATGCTGGTTTTGAACAGCAGCCAAAGAAGTTTGTAAACCCCAAGATACTTTTACTGAACATAGAGTTGGAGCTAAAATCAGAAAAAGAAAATGCAGAGATAAGGTAGTATGTTTTTGGCATACATTTTATTTTATTTGAGAATAGTTCTGTAATCTCTCCAATTCAATATTTTCTTTCATAAGTTGCACAGTTCTGAAGGTGCTTACTCCACCTAATCATCTTTTGTGTAGGCTCTCAGATCCAGCGCAATATCAGTCAATTGTTGATGCAGAGTGGAATATCATTTATGACAAGTTGGATAAATGTGTAAAGAGTGGTGCCAAAGTTGTTTTGTCTAGACTCGCTATTGGTGATCTGGCCACACAGGTTAGTAACAAACTTGCTTTATGGTCCATTCCTTTGGTTCATGATCATATCTTCACATGGATTTTTCGGAGAACTAGAATTTAGATAGATAGTAAGTAGGAACTAAAACTTGTAGCCTTATCTTTGGGGAGATCATGCCGATTTTTCTTGTGTTATGGTAGTGTACTAGTGTATTCCTACATATCTAATATGTTCTGAAGTGTCATAATATGCATAATGAACTAAAAATAGCATGTGCCTCCTCCTCATCCTTACTTTTTTGGAACTCATTGTGCCTCCTTCACCCTCTTAATTTTGGTTGGAGAGGGAGGTGTCAGTAATTTTACAACAGACCAGATCATCTATCCTAGTTTTAGAAATTGACAGAATTTCTGTGAGGGAAAGAAGTAGAAACTATATCTCCCCATCTGGTTTACCTAATTTTATCAAAAAGAAACTATAGACTCTCCACCCTGTGCAATAAAATACACTGGTGAACTTTTGATGAGGAAAAGGTTTGGTCTTGCTGTGTAATTAATGAACCCTATTAAATTTTGTAACTTGCTTGTTATTCTGCTGGTTGCTGCAAAGATATGTGGAAGTACAGTTATGGAGCTGTTGTTTTTTACTGCCATCATCTTAAGTTTACATTTCTGCCAGAATTTTCTCACTGACACTCTACTGGGCTTTAGGAGATTATTGTGAAGATTATGACTGATATTCTTGTCTTTTATCTGCACAGTATTTTGCAGACCGAGATATATTCTGTGCTGGTCGTGTCTCTGAAGAGGATCTGCAGCGGGTAGCTGCTGCTGCTGGTGGA</genome_strand>
        <mrna_strand>GGAAGCCAAGCCTTTTGTCGAAGAGGGTGTCCACCCTCAAAATCCNTATCGTAGTTATCGAACCGCTTCTAATATG.................................................................................................................................GCAATCGAGAAGGTAAAAGAATTGGCTGTTAGCATAGAGGGAAAAAGTTTGGAAGAGAAGAAAAGTCTGCTTGGAAAGTGTGCTGCTACAACTCTGTCATCAAAGCTCATTGGAGGGGAAAAGGAATTCTTTGCATCCATGGTTGTGGATGCCGTTCTTGCAATTGGAACTGATGATAGGTTGAACATGATCGGAATTAAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCTGGAGGTACTATGCGGGATTCCTTCCTTGTAAATGGTGTTGCCTTTAAGAAGACATTTTCCTATGCTGGTTTTGAACAGCAGCCAAAGAAGTTTGTAAACCCCAAGATACTTTTACTGAACATAGAGTTGGAGCTAAAATCAGAAAAAGAAAATGCAGAGATAAG................................................................................................................................GCTCTCAGATCCAGCGCAATATCAGTCAATTGTTGATGCAGAGTGGAATATCATTTATGGCAAGTTGGATAAATGTGTAAAGAGTGGTGCCAAAGTTGTTTTGTCTAGACTCGCTATTGGTGATCTGGCCACACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTTGCAGACCGAGATATATTTTGTGCTGGTCGTGTCTCTGAAGAGGATCTGCAGCGGGTAGCGGCTGCCGCTGGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453668" ref_strand="+" ref_description="SGN-E453668 [cSTS-20-B18]">
      <seq>ttcgaatgatggtgccactataatgaagcttctagacataattcatcctgcagcaaaaatacttgttgacattgccaagtcccaagactctgaggttggtgatggaaccactacagttgttctgcttgcaggagaatttttaaaggaagccaagccttttgtcgaagagggtgtccaccctcaaaatcttattcgtagttatcgaaccgcttctaatatggcaatcgagaaggtaaaagaattggctgttagcatagagggaaaaagtttggaagaaaagaaaagtttgcttgcgaagtgtgctgctacaactctgtcatcaaagctcattggaggggaaaaggaattctttgcatccatggttgtggatgctgttcttgcaatcggaactgatgataggctgaacatgattggaattaagaaggtccctggaggtactatgcgggattccttccttgtaaatggtgttgcctttaagaagacattttcctatgctggttttgaacagcagccaaagaagtttgtaaaccccaagatacttttactgaacatagagttggagctaaaatcagaaaaagaaaatgcagagataaggctctcagatccagcgcaatatcagtcaattgttgatgcagagtggaatatcatttatgacaagttggataaatgtgtaaagagtggtgccaaagttgttttgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114810" stop="112405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114510" g_stop="114417" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114416" i_stop="114202" i_length="215">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114201" g_stop="114076" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="220" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114075" i_stop="113947" i_length="129">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113946" g_stop="113743" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="424" r_length="204" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113742" i_stop="113109" i_length="634">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113108" g_stop="112939" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="594" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112938" i_stop="112811" i_length="128">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="112810" g_stop="112705" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="700" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E453668" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E453668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114510" e_stop="114417"/>
          <exon e_start="114201" e_stop="114076"/>
          <exon e_start="113946" e_stop="113743"/>
          <exon e_start="113108" e_stop="112939"/>
          <exon e_start="112810" e_stop="112705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAATGATGGTGCCACTATAATGAAGCTTCTAGATATAATTCATCCTGCAGCAAAAATACTTGTTGACATCGCCAAGTCTCAAGACTCTGAGGTATGCTGTACTTGTGTTTATGCTATTTGTTGCTATAACATCAGTTGAATAGTGTAATACTGCTAAGTCATTTCCTGTGCTTTTACTTCTAAGGTACATGAGATGCGGCTCATAAGTTGACTGTATATGCAGTCGAGACACATGAGCTTGGAAAGTTTTTTGGTTGTCCCTTCACCCCTTTTTTACTACTAGTGCCTTGTTGTCCCTCTCTGCAGGTTGGTGATGGAACCACTACAGTTGTTCTGCTTGCAGGAGAATTTTTAAAGGAAGCCAAGCCTTTTGTCGAAGAGGGTGTCCACCCTCAAAATCTTATTCGTAGTTATCGAACCGCTTCTAATATGGTAGATTTTTCCTCCTCCTGGTTGCTTGTTCCTTTTTGTCTTACCCCTTTTGGCTATATTCACTGTCCCAGGAGGGTGCAAATGGTTTGTCATCGCAGTTTATTGAGTAATTTGGTATTGATTCTGTAGGCAATCGAGAAGGTAAAAGAATTGGCTGTTAGCATAGAGGGAAAAAGTTTGGAAGAAAAGAAAAGTCTGCTTGCAAAGTGTGCTGCTACAACTCTGTCATCAAAGCTCATTGGAGGGGAAAAGGAATTCTTTGCATCCATGGTTGTGGATGCTGTTCTTGCAATCGGAACTGATGATAGGCTGAACATGATCGGAATTAAGAAGGTATACAATCTTGCAACTGGATTTTTTGTTTGTCTTCTATGAGTTCGTGGTTTCTTAATGTTGGACTTTATTATGTCGGCCTTTAGGTTCGTTTGTTGTGTCAGAAGAACCTAAAAATAGATGCTTACAAAATTTGTATTTCTGTTGTATTCCTCTTTGTACCATCTTGGTGCCTGTCAAAATAAAATCTTTACCTTATCAAATTTTGGTAGCATCTATTTTTAGGTCTATAAATATGATTTCTTTTCCCTTCACGAAAAAGACATAAACTTAGGTGGTGTAACTATTTGAGTAAGCTCTTATGAGAATCTTTACCTTATCAAAAGAAGAAAGCTCATCTTATTCAGTCAATAAGGGTTGATTTATGTGGTCTTTTCCTTATAAACAACTATTGGTTGATTTGAGTTTTAGTTAATCCCATACAAGTGGATCCTTTGATATGTTTTAGGGTATGGAAGAATAGAGTATAATATATTCATCTGTGGAAATTGAAGATAGATCTGTGAGAAAATGAAGATCATATATGCTGTGGATTACAGCTTGATTAGAGACTACAGAAAATTTTACTATTGGTTCTACGAGCTTATCTAGTATTTTCTTACCTTTTTTTTTTTGCTTTCTTTTGTATGTGTAGGTCCCTGGAGGTACTATGCGGGATTCTTTCCTTGTAAATGGTGTTGCCTTTAAGAAGACATTTTCCTATGCTGGTTTTGAACAGCAGCCAAAGAAGTTTGTAAACCCCAAGATACTTTTACTGAACATAGAGTTGGAGCTAAAATCAGAAAAAGAAAATGCAGAGATAAGGTAGTATGTTTTTGGCATACATTTTATTTTATTTGAGAATAGTTCTGTAATCTCTCCAATTCAATATTTTCTTTCATAAGTTGCACAGTTCTGAAGGTGCTTACTCCACCTAATCATCTTTTGTGTAGGCTCTCAGATCCAGCGCAATATCAGTCAATTGTTGATGCAGAGTGGAATATCATTTATGACAAGTTGGATAAATGTGTAAAGAGTGGTGCCAAAGTTGTTTTGTCT</genome_strand>
        <mrna_strand>TTCGAATGATGGTGCCACTATAATGAAGCTTCTAGACATAATTCATCCTGCAGCAAAAATACTTGTTGACATTGCCAAGTCCCAAGACTCTGAG.......................................................................................................................................................................................................................GTTGGTGATGGAACCACTACAGTTGTTCTGCTTGCAGGAGAATTTTTAAAGGAAGCCAAGCCTTTTGTCGAAGAGGGTGTCCACCCTCAAAATCTTATTCGTAGTTATCGAACCGCTTCTAATATG.................................................................................................................................GCAATCGAGAAGGTAAAAGAATTGGCTGTTAGCATAGAGGGAAAAAGTTTGGAAGAAAAGAAAAGTTTGCTTGCGAAGTGTGCTGCTACAACTCTGTCATCAAAGCTCATTGGAGGGGAAAAGGAATTCTTTGCATCCATGGTTGTGGATGCTGTTCTTGCAATCGGAACTGATGATAGGCTGAACATGATTGGAATTAAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCTGGAGGTACTATGCGGGATTCCTTCCTTGTAAATGGTGTTGCCTTTAAGAAGACATTTTCCTATGCTGGTTTTGAACAGCAGCCAAAGAAGTTTGTAAACCCCAAGATACTTTTACTGAACATAGAGTTGGAGCTAAAATCAGAAAAAGAAAATGCAGAGATAAG................................................................................................................................GCTCTCAGATCCAGCGCAATATCAGTCAATTGTTGATGCAGAGTGGAATATCATTTATGACAAGTTGGATAAATGTGTAAAGAGTGGTGCCAAAGTTGTTTTGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561987" ref_strand="+" ref_description="SGN-E561987 [17108]">
      <seq>caagtcccaagactctgaggttggtgatggaaccactacagttgttctgcttgcaggagaatttttaaaggaagccaagccttttgtcgaagagggtgtccaccctcaaaatcttattcgtagttatcgaaccgcttctaatatggcaatcgagaaggtaaaagaattggctgttagcatagagggaaaaagtttggaagaaaagaaaagtctgcttgcgaagtgtgctgctacaactctgtcatcaaagctcattggaggggaaaaggaattctttgcatccatggttgtggatgctgttcttgcaatcggaactgatgataggctgaacatgattggaattaagaaggtccctggaggtactatgcgggattccttccttgtaaatggtgttgcctttaagaagacattttcctatgctggttttgaacagcagccaaagaagtttgtaaaccccaagatacttttactgaacatagagttggagctaaaatcagaaaaagaaaatgcagagataaggctctcagatccagcgcaatatcagtcaattgttgatgcagagtggaatatcatttatgacaagttggataaatgtgtaaaagagtggtgccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114509" stop="112418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114435" g_stop="114417" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114416" i_stop="114202" i_length="215">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114201" g_stop="114076" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="145" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114075" i_stop="113947" i_length="129">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113946" g_stop="113743" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="349" r_length="204" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113742" i_stop="113109" i_length="634">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113108" g_stop="112939" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="519" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112938" i_stop="112811" i_length="128">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="112810" g_stop="112718" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="613" r_length="94" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E561987" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E561987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114435" e_stop="114417"/>
          <exon e_start="114201" e_stop="114076"/>
          <exon e_start="113946" e_stop="113743"/>
          <exon e_start="113108" e_stop="112939"/>
          <exon e_start="112810" e_stop="112718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTCTCAAGACTCTGAGGTATGCTGTACTTGTGTTTATGCTATTTGTTGCTATAACATCAGTTGAATAGTGTAATACTGCTAAGTCATTTCCTGTGCTTTTACTTCTAAGGTACATGAGATGCGGCTCATAAGTTGACTGTATATGCAGTCGAGACACATGAGCTTGGAAAGTTTTTTGGTTGTCCCTTCACCCCTTTTTTACTACTAGTGCCTTGTTGTCCCTCTCTGCAGGTTGGTGATGGAACCACTACAGTTGTTCTGCTTGCAGGAGAATTTTTAAAGGAAGCCAAGCCTTTTGTCGAAGAGGGTGTCCACCCTCAAAATCTTATTCGTAGTTATCGAACCGCTTCTAATATGGTAGATTTTTCCTCCTCCTGGTTGCTTGTTCCTTTTTGTCTTACCCCTTTTGGCTATATTCACTGTCCCAGGAGGGTGCAAATGGTTTGTCATCGCAGTTTATTGAGTAATTTGGTATTGATTCTGTAGGCAATCGAGAAGGTAAAAGAATTGGCTGTTAGCATAGAGGGAAAAAGTTTGGAAGAAAAGAAAAGTCTGCTTGCAAAGTGTGCTGCTACAACTCTGTCATCAAAGCTCATTGGAGGGGAAAAGGAATTCTTTGCATCCATGGTTGTGGATGCTGTTCTTGCAATCGGAACTGATGATAGGCTGAACATGATCGGAATTAAGAAGGTATACAATCTTGCAACTGGATTTTTTGTTTGTCTTCTATGAGTTCGTGGTTTCTTAATGTTGGACTTTATTATGTCGGCCTTTAGGTTCGTTTGTTGTGTCAGAAGAACCTAAAAATAGATGCTTACAAAATTTGTATTTCTGTTGTATTCCTCTTTGTACCATCTTGGTGCCTGTCAAAATAAAATCTTTACCTTATCAAATTTTGGTAGCATCTATTTTTAGGTCTATAAATATGATTTCTTTTCCCTTCACGAAAAAGACATAAACTTAGGTGGTGTAACTATTTGAGTAAGCTCTTATGAGAATCTTTACCTTATCAAAAGAAGAAAGCTCATCTTATTCAGTCAATAAGGGTTGATTTATGTGGTCTTTTCCTTATAAACAACTATTGGTTGATTTGAGTTTTAGTTAATCCCATACAAGTGGATCCTTTGATATGTTTTAGGGTATGGAAGAATAGAGTATAATATATTCATCTGTGGAAATTGAAGATAGATCTGTGAGAAAATGAAGATCATATATGCTGTGGATTACAGCTTGATTAGAGACTACAGAAAATTTTACTATTGGTTCTACGAGCTTATCTAGTATTTTCTTACCTTTTTTTTTTTGCTTTCTTTTGTATGTGTAGGTCCCTGGAGGTACTATGCGGGATTCTTTCCTTGTAAATGGTGTTGCCTTTAAGAAGACATTTTCCTATGCTGGTTTTGAACAGCAGCCAAAGAAGTTTGTAAACCCCAAGATACTTTTACTGAACATAGAGTTGGAGCTAAAATCAGAAAAAGAAAATGCAGAGATAAGGTAGTATGTTTTTGGCATACATTTTATTTTATTTGAGAATAGTTCTGTAATCTCTCCAATTCAATATTTTCTTTCATAAGTTGCACAGTTCTGAAGGTGCTTACTCCACCTAATCATCTTTTGTGTAGGCTCTCAGATCCAGCGCAATATCAGTCAATTGTTGATGCAGAGTGGAATATCATTTATGACAAGTTGGATAAATGTGT-AAAGAGTGGTGCCAA</genome_strand>
        <mrna_strand>CAAGTCCCAAGACTCTGAG.......................................................................................................................................................................................................................GTTGGTGATGGAACCACTACAGTTGTTCTGCTTGCAGGAGAATTTTTAAAGGAAGCCAAGCCTTTTGTCGAAGAGGGTGTCCACCCTCAAAATCTTATTCGTAGTTATCGAACCGCTTCTAATATG.................................................................................................................................GCAATCGAGAAGGTAAAAGAATTGGCTGTTAGCATAGAGGGAAAAAGTTTGGAAGAAAAGAAAAGTCTGCTTGCGAAGTGTGCTGCTACAACTCTGTCATCAAAGCTCATTGGAGGGGAAAAGGAATTCTTTGCATCCATGGTTGTGGATGCTGTTCTTGCAATCGGAACTGATGATAGGCTGAACATGATTGGAATTAAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCTGGAGGTACTATGCGGGATTCCTTCCTTGTAAATGGTGTTGCCTTTAAGAAGACATTTTCCTATGCTGGTTTTGAACAGCAGCCAAAGAAGTTTGTAAACCCCAAGATACTTTTACTGAACATAGAGTTGGAGCTAAAATCAGAAAAAGAAAATGCAGAGATAAG................................................................................................................................GCTCTCAGATCCAGCGCAATATCAGTCAATTGTTGATGCAGAGTGGAATATCATTTATGACAAGTTGGATAAATGTGTAAAAGAGTGGTGCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E472817" ref_strand="+" ref_description="SGN-E472817 [cSTB-30-C5]">
      <seq>tacaactctgtcatcaaagctcattggaggggaaaaggaattctttgcatccatggttgtggatgctgttcttgcaatcggaactgatgataggctgaacatgattggaattaagaaggtccctggaggtactatgcgggattccttccttgtaaatggtgttgcctttaagaagacattttcctatgctggttttgaacagcagccaaagaagtttgtaaaccccaagatacttttactgaacatagagttggagctaaaatcagaaaaagaaaatgcagagataaggctctcagatccagcgcaatatcagtcaattgttgatgcagagtggaatatcatttatgacaagttggataaatgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114160" stop="112433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113860" g_stop="113743" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113742" i_stop="113109" i_length="634">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113108" g_stop="112939" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="288" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112938" i_stop="112811" i_length="128">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112810" g_stop="112733" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="366" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E472817" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E472817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113860" e_stop="113743"/>
          <exon e_start="113108" e_stop="112939"/>
          <exon e_start="112810" e_stop="112733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAACTCTGTCATCAAAGCTCATTGGAGGGGAAAAGGAATTCTTTGCATCCATGGTTGTGGATGCTGTTCTTGCAATCGGAACTGATGATAGGCTGAACATGATCGGAATTAAGAAGGTATACAATCTTGCAACTGGATTTTTTGTTTGTCTTCTATGAGTTCGTGGTTTCTTAATGTTGGACTTTATTATGTCGGCCTTTAGGTTCGTTTGTTGTGTCAGAAGAACCTAAAAATAGATGCTTACAAAATTTGTATTTCTGTTGTATTCCTCTTTGTACCATCTTGGTGCCTGTCAAAATAAAATCTTTACCTTATCAAATTTTGGTAGCATCTATTTTTAGGTCTATAAATATGATTTCTTTTCCCTTCACGAAAAAGACATAAACTTAGGTGGTGTAACTATTTGAGTAAGCTCTTATGAGAATCTTTACCTTATCAAAAGAAGAAAGCTCATCTTATTCAGTCAATAAGGGTTGATTTATGTGGTCTTTTCCTTATAAACAACTATTGGTTGATTTGAGTTTTAGTTAATCCCATACAAGTGGATCCTTTGATATGTTTTAGGGTATGGAAGAATAGAGTATAATATATTCATCTGTGGAAATTGAAGATAGATCTGTGAGAAAATGAAGATCATATATGCTGTGGATTACAGCTTGATTAGAGACTACAGAAAATTTTACTATTGGTTCTACGAGCTTATCTAGTATTTTCTTACCTTTTTTTTTTTGCTTTCTTTTGTATGTGTAGGTCCCTGGAGGTACTATGCGGGATTCTTTCCTTGTAAATGGTGTTGCCTTTAAGAAGACATTTTCCTATGCTGGTTTTGAACAGCAGCCAAAGAAGTTTGTAAACCCCAAGATACTTTTACTGAACATAGAGTTGGAGCTAAAATCAGAAAAAGAAAATGCAGAGATAAGGTAGTATGTTTTTGGCATACATTTTATTTTATTTGAGAATAGTTCTGTAATCTCTCCAATTCAATATTTTCTTTCATAAGTTGCACAGTTCTGAAGGTGCTTACTCCACCTAATCATCTTTTGTGTAGGCTCTCAGATCCAGCGCAATATCAGTCAATTGTTGATGCAGAGTGGAATATCATTTATGACAAGTTGGATAAATGTGT</genome_strand>
        <mrna_strand>TACAACTCTGTCATCAAAGCTCATTGGAGGGGAAAAGGAATTCTTTGCATCCATGGTTGTGGATGCTGTTCTTGCAATCGGAACTGATGATAGGCTGAACATGATTGGAATTAAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCTGGAGGTACTATGCGGGATTCCTTCCTTGTAAATGGTGTTGCCTTTAAGAAGACATTTTCCTATGCTGGTTTTGAACAGCAGCCAAAGAAGTTTGTAAACCCCAAGATACTTTTACTGAACATAGAGTTGGAGCTAAAATCAGAAAAAGAAAATGCAGAGATAAG................................................................................................................................GCTCTCAGATCCAGCGCAATATCAGTCAATTGTTGATGCAGAGTGGAATATCATTTATGACAAGTTGGATAAATGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561736" ref_strand="+" ref_description="SGN-E561736 [18741]">
      <seq>cggatcaatcgcctccacatgtctgccatgatgcaacctcagatcatattgctgaaggaagggacagacacgtcccaagggaaggcacagttggtgagcaacataaatgcatgtatggctgtggctgatgtggtgcgtaccacccttggccctaggggtatggacaagttgatccacgatgataaaggaaacaccactatttcgaatgatggtgccactataatgaagcttctagacataattcatcctgcagcaaaaatacttgttgacattgccaagtcccaagactctgaggttggtgatggaaccactacagttgttctgcttgcaggagaatttttaaaggaagccaagccttttgtcgaagagggtgtccaccctcaaaatcttattcgtagttatcgaaccgcttctaatatggcaatcgagaaggtaaaagaattggctgttagcatagagggaaaaagtttggaaggaaaagaaaagtctgcttgcgaagtgtgctgctacaactctgtcatcaaaagctcattggaggggaaaaggaattctttggcatccatgggttgtggatgctgttcttgcaatcggaactgatgataggctgaaacatgattggaattaaaaagtcctggaggtactatgcgggatccttccttgtaaatggtgttggcttagaaagacatttcctatgctggttttgacagcaggcaaagagttgtaaccccaagatactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114978" stop="112692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114677" g_stop="114417" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="294" r_length="261" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114416" i_stop="114202" i_length="215">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114201" g_stop="114076" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="420" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114075" i_stop="113947" i_length="129">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113946" g_stop="113743" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="629" r_length="209" r_score="0.936"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113742" i_stop="113109" i_length="634">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113108" g_stop="112991" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="738" r_length="109" r_score="0.873"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E561736" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E561736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114677" e_stop="114417"/>
          <exon e_start="114201" e_stop="114076"/>
          <exon e_start="113946" e_stop="113743"/>
          <exon e_start="113108" e_stop="112991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACCTCAGATCATATTGCTTAAGGAAGGGACAGACACGTCTCAGGGGAAGGCACAGTTGGTGAGCAACATAAATGCATGTATGGCTGTGGCTGATGTGGTGCGTACCACCCTTGGTCCTAGGGGTATGGACAAGTTGATCCACGACGATAAAGGAAACACCACTATTTCAAATGATGGTGCCACTATAATGAAGCTTCTAGATATAATTCATCCTGCAGCAAAAATACTTGTTGACATCGCCAAGTCTCAAGACTCTGAGGTATGCTGTACTTGTGTTTATGCTATTTGTTGCTATAACATCAGTTGAATAGTGTAATACTGCTAAGTCATTTCCTGTGCTTTTACTTCTAAGGTACATGAGATGCGGCTCATAAGTTGACTGTATATGCAGTCGAGACACATGAGCTTGGAAAGTTTTTTGGTTGTCCCTTCACCCCTTTTTTACTACTAGTGCCTTGTTGTCCCTCTCTGCAGGTTGGTGATGGAACCACTACAGTTGTTCTGCTTGCAGGAGAATTTTTAAAGGAAGCCAAGCCTTTTGTCGAAGAGGGTGTCCACCCTCAAAATCTTATTCGTAGTTATCGAACCGCTTCTAATATGGTAGATTTTTCCTCCTCCTGGTTGCTTGTTCCTTTTTGTCTTACCCCTTTTGGCTATATTCACTGTCCCAGGAGGGTGCAAATGGTTTGTCATCGCAGTTTATTGAGTAATTTGGTATTGATTCTGTAGGCAATCGAGAAGGTAAAAGAATTGGCTGTTAGCATAGAGGGAAAAAGTTTGGAA-GAAAAGAAAAGTCTGCTTGCAAAGTGTGCTGCTACAACTCTGTCATC-AAAGCTCATTGGAGGGGAAAAGGAATTCTTT-GCATCCAT-GGTTGTGGATGCTGTTCTTGCAATCGGAACTGATGATAGGCTG-AACATGATCGGAATTAAGAAGGTATACAATCTTGCAACTGGATTTTTTGTTTGTCTTCTATGAGTTCGTGGTTTCTTAATGTTGGACTTTATTATGTCGGCCTTTAGGTTCGTTTGTTGTGTCAGAAGAACCTAAAAATAGATGCTTACAAAATTTGTATTTCTGTTGTATTCCTCTTTGTACCATCTTGGTGCCTGTCAAAATAAAATCTTTACCTTATCAAATTTTGGTAGCATCTATTTTTAGGTCTATAAATATGATTTCTTTTCCCTTCACGAAAAAGACATAAACTTAGGTGGTGTAACTATTTGAGTAAGCTCTTATGAGAATCTTTACCTTATCAAAAGAAGAAAGCTCATCTTATTCAGTCAATAAGGGTTGATTTATGTGGTCTTTTCCTTATAAACAACTATTGGTTGATTTGAGTTTTAGTTAATCCCATACAAGTGGATCCTTTGATATGTTTTAGGGTATGGAAGAATAGAGTATAATATATTCATCTGTGGAAATTGAAGATAGATCTGTGAGAAAATGAAGATCATATATGCTGTGGATTACAGCTTGATTAGAGACTACAGAAAATTTTACTATTGGTTCTACGAGCTTATCTAGTATTTTCTTACCTTTTTTTTTTTGCTTTCTTTTGTATGTGTAGGTCCCTGGAGGTACTATGCGGGATTCTTTCCTTGTAAATGGTGTTGCCTTTAAGAAGACATTTTCCTATGCTGGTTTTGAACAGCAGCCAAAGAAGTTTGTAAACCCCAAGATACTTT</genome_strand>
        <mrna_strand>CAACCTCAGATCATATTGCTGAAGGAAGGGACAGACACGTCCCAAGGGAAGGCACAGTTGGTGAGCAACATAAATGCATGTATGGCTGTGGCTGATGTGGTGCGTACCACCCTTGGCCCTAGGGGTATGGACAAGTTGATCCACGATGATAAAGGAAACACCACTATTTCGAATGATGGTGCCACTATAATGAAGCTTCTAGACATAATTCATCCTGCAGCAAAAATACTTGTTGACATTGCCAAGTCCCAAGACTCTGAG.......................................................................................................................................................................................................................GTTGGTGATGGAACCACTACAGTTGTTCTGCTTGCAGGAGAATTTTTAAAGGAAGCCAAGCCTTTTGTCGAAGAGGGTGTCCACCCTCAAAATCTTATTCGTAGTTATCGAACCGCTTCTAATATG.................................................................................................................................GCAATCGAGAAGGTAAAAGAATTGGCTGTTAGCATAGAGGGAAAAAGTTTGGAAGGAAAAGAAAAGTCTGCTTGCGAAGTGTGCTGCTACAACTCTGTCATCAAAAGCTCATTGGAGGGGAAAAGGAATTCTTTGGCATCCATGGGTTGTGGATGCTGTTCTTGCAATCGGAACTGATGATAGGCTGAAACATGATTGGAATTAAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................-T-CCTGGAGGTACTATGCGGGA-TCCTTCCTTGTAAATGGTGTTGGC-TTAGAAAGACA-TTTCCTATGCTGGTTTTG-ACAGCAGGCAAAG-AG-TTGT-AACCCCAAGATACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577451" ref_strand="+" ref_description="SGN-E577451 [59274]">
      <seq>atcaaagtcggatcaaatcgcctccaacaatgtctgccatgatgcaacctcagatcatattgctgaaggaagggacagacacgtcccaagggaaggcacagttggtgagcaacataaatgcatgtatggctgtggctgatgtggtgcgtaccacccttggccctaggggtatggacaagttgatccacgatgataaaggaaacaccactatttcgaatgatggtgccactataatgaagcttctagacataattcatcctgcagcaaaaatacttgttgacattgccaagtcccaagactctgaggttggtgatggaaccactacagttgttctgcttgcaggagaatttttaaaggaagccaagccttttgtcgaagagggtgtccaccctcaaaatcttattcgtagttatcgaaccgcttctaatatggcaatcgagaaggtaaaagaattggctgttagcatagagggaaaaagtttggaagaaaagaaaagtctgcttgcgaagtgtgctgctacaactctgtcatcaaagctcattggaggggacaaggaattctttgcatccatggttgttggatgctgttcttgcaatcggaactgatgattaggctgaacatgattgcgcattcaagaaggtccctgggaggtactattgcggggattccttcctttgtaaaatgggtgttgcctttaagcaagacaattttcctatgctggttgtgaaccagcagccaaagaacgtttgtaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="115663" stop="112703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115363" g_stop="115320" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115319" i_stop="114678" i_length="642">
            <donor d_prob="0.868" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114677" g_stop="114417" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="305" r_length="261" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114416" i_stop="114202" i_length="215">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114201" g_stop="114076" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="431" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="114075" i_stop="113947" i_length="129">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113946" g_stop="113743" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="639" r_length="208" r_score="0.941"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113742" i_stop="113109" i_length="634">
            <donor d_prob="0.999" d_score="0.83"/>
            <acceptor a_prob="1.000" a_score="0.70"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113108" g_stop="113003" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="755" r_length="116" r_score="0.792"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E577451" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115363" e_stop="115320"/>
          <exon e_start="114677" e_stop="114417"/>
          <exon e_start="114201" e_stop="114076"/>
          <exon e_start="113946" e_stop="113743"/>
          <exon e_start="113108" e_stop="113003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGAAGTCGGATCAAATCGCCTCCAACAATGTCTGCCATGATGGTAAGCCTGCAATTATATAGTTGAAATGAGAAGCAAATCTCAGTAGAGCTGTTTAAATTTCTTAAAATGTGTCAAAAAGTGGAGTATGACTCTGTGCACTATTTCTCATGGAAATTGCTGCTAGTTTAGTGTATGTAAATAAACATACATATGTATCCAAGGTACTGGATGTGGATGCGGAGCTTGCCAACCCTGTAAATCCACCCATGGTTGTGAACTTCAGCAAAAAGCTTGCTTTTTTAACTGAGACAACTGAAATTGCAATAGTGCCTATAGTTTGTTCCTAGTAAATTCAGATTAATGTGGTAAATTTGACATTGTTGAGAGTATGAAAGGTGTTATGGTGAAGATTTTGTGTTACATGTTTAAGATCACACTTAAAGGCTCCATATTTTCTGTTGCCAGGTTTTTATACTCTCGCTAATTTGTATTAGAAGACAATTTTATTACTGCTGGAATGAAATGGGTCCAAATAGAACAGCATGAATATAGAGAAATCTATAGCCAACAACTAATTTGGAAATGAGGCACAGTTGGTTTATTTATTTGCTATATACCTATGTGGCAATGATGTATTTTTCTGGACTTCTTTTTTCTGGTCAATCAATTTCTGATCTGGTGTCGTGGCTTTTTATGTAACAGCAACCTCAGATCATATTGCTTAAGGAAGGGACAGACACGTCTCAGGGGAAGGCACAGTTGGTGAGCAACATAAATGCATGTATGGCTGTGGCTGATGTGGTGCGTACCACCCTTGGTCCTAGGGGTATGGACAAGTTGATCCACGACGATAAAGGAAACACCACTATTTCAAATGATGGTGCCACTATAATGAAGCTTCTAGATATAATTCATCCTGCAGCAAAAATACTTGTTGACATCGCCAAGTCTCAAGACTCTGAGGTATGCTGTACTTGTGTTTATGCTATTTGTTGCTATAACATCAGTTGAATAGTGTAATACTGCTAAGTCATTTCCTGTGCTTTTACTTCTAAGGTACATGAGATGCGGCTCATAAGTTGACTGTATATGCAGTCGAGACACATGAGCTTGGAAAGTTTTTTGGTTGTCCCTTCACCCCTTTTTTACTACTAGTGCCTTGTTGTCCCTCTCTGCAGGTTGGTGATGGAACCACTACAGTTGTTCTGCTTGCAGGAGAATTTTTAAAGGAAGCCAAGCCTTTTGTCGAAGAGGGTGTCCACCCTCAAAATCTTATTCGTAGTTATCGAACCGCTTCTAATATGGTAGATTTTTCCTCCTCCTGGTTGCTTGTTCCTTTTTGTCTTACCCCTTTTGGCTATATTCACTGTCCCAGGAGGGTGCAAATGGTTTGTCATCGCAGTTTATTGAGTAATTTGGTATTGATTCTGTAGGCAATCGAGAAGGTAAAAGAATTGGCTGTTAGCATAGAGGGAAAAAGTTTGGAAGAAAAGAAAAGTCTGCTTGCAAAGTGTGCTGCTACAACTCTGTCATCAAAGCTCATTGGAGGGGAAAAGGAATTCTTTGCATCCATGGTTG-TGGATGCTGTTCTTGCAATCGGAACTGATGA-TAGGCTGAACATGATCG-GAATT-AAGAAGGTATACAATCTTGCAACTGGATTTTTTGTTTGTCTTCTATGAGTTCGTGGTTTCTTAATGTTGGACTTTATTATGTCGGCCTTTAGGTTCGTTTGTTGTGTCAGAAGAACCTAAAAATAGATGCTTACAAAATTTGTATTTCTGTTGTATTCCTCTTTGTACCATCTTGGTGCCTGTCAAAATAAAATCTTTACCTTATCAAATTTTGGTAGCATCTATTTTTAGGTCTATAAATATGATTTCTTTTCCCTTCACGAAAAAGACATAAACTTAGGTGGTGTAACTATTTGAGTAAGCTCTTATGAGAATCTTTACCTTATCAAAAGAAGAAAGCTCATCTTATTCAGTCAATAAGGGTTGATTTATGTGGTCTTTTCCTTATAAACAACTATTGGTTGATTTGAGTTTTAGTTAATCCCATACAAGTGGATCCTTTGATATGTTTTAGGGTATGGAAGAATAGAGTATAATATATTCATCTGTGGAAATTGAAGATAGATCTGTGAGAAAATGAAGATCATATATGCTGTGGATTACAGCTTGATTAGAGACTACAGAAAATTTTACTATTGGTTCTACGAGCTTATCTAGTATTTTCTTACCTTTTTTTTTTTGCTTTCTTTTGTATGTGTAGGTCCCT-GGAGGTACTA-TGC-GGGATTCTTTCCTT-GT-AAAT-GGTGTTGCCTTTAAG-AAGAC-ATTTTCCTATGCTGGTTTTGAA-CAGCAGCCAAAGAA-GTTTGTAAACC</genome_strand>
        <mrna_strand>ATCAAAGTCGGATCAAATCGCCTCCAACAATGTCTGCCATGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTCAGATCATATTGCTGAAGGAAGGGACAGACACGTCCCAAGGGAAGGCACAGTTGGTGAGCAACATAAATGCATGTATGGCTGTGGCTGATGTGGTGCGTACCACCCTTGGCCCTAGGGGTATGGACAAGTTGATCCACGATGATAAAGGAAACACCACTATTTCGAATGATGGTGCCACTATAATGAAGCTTCTAGACATAATTCATCCTGCAGCAAAAATACTTGTTGACATTGCCAAGTCCCAAGACTCTGAG.......................................................................................................................................................................................................................GTTGGTGATGGAACCACTACAGTTGTTCTGCTTGCAGGAGAATTTTTAAAGGAAGCCAAGCCTTTTGTCGAAGAGGGTGTCCACCCTCAAAATCTTATTCGTAGTTATCGAACCGCTTCTAATATG.................................................................................................................................GCAATCGAGAAGGTAAAAGAATTGGCTGTTAGCATAGAGGGAAAAAGTTTGGAAGAAAAGAAAAGTCTGCTTGCGAAGTGTGCTGCTACAACTCTGTCATCAAAGCTCATTGGAGGGGACAAGGAATTCTTTGCATCCATGGTTGTTGGATGCTGTTCTTGCAATCGGAACTGATGATTAGGCTGAACATGATTGCGCATTCAAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCTGGGAGGTACTATTGCGGGGATTCCTTCCTTTGTAAAATGGGTGTTGCCTTTAAGCAAGACAATTTTCCTATGCTGGTTGTGAACCAGCAGCCAAAGAACGTTTGTAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314408" ref_strand="+" ref_description="SGN-E314408 [cTOA-21-J11]">
      <seq>agaatagaagctcacttttctcctcaagatcgaagtcggatcaaatcgcctccaacaatgtctgccatgatgcaacctcagatcatattgcttaaggaagggacagacacgtctcaggggaaggcacagttggtgagcaacataaatgcatgtatggctgtggctgatgtggtgcgtaccacccttggtcctaggggtatggacaagttgatccacgacgataaaggaaacaccactatttcaaatgatggtgccactataatgaagcttctagatataattcatcctgcagcaaaaatacttgttgacatcgccaagtctcaagactctgaggttggtgatggaaccactacagttgttctgcttgcaggagaatttttaaaggaagccaagccttttgtcgaagagggtgtccaccctcaaaatcttattcgtagttatcgaaccgcttctaatatggcaatcgagaaggtaaaagaattggctgttagcatagagggaaaaagtttggaagaaaagaaaagtctgcttgcaaagtgtgctgctacaactctgtcatcaaagctcattggaggggaaaaggaattctttgcatccatggttgtggatgctgttcttgcaatcggaactgatgataggctgaacatgatcggaattaagaagtccctgggagtactatgcggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="115691" stop="113443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115391" g_stop="115320" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115319" i_stop="114678" i_length="642">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114677" g_stop="114417" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="333" r_length="261" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114416" i_stop="114202" i_length="215">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114201" g_stop="114076" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="459" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="114075" i_stop="113947" i_length="129">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113946" g_stop="113743" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="663" r_length="204" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E314408" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115391" e_stop="115320"/>
          <exon e_start="114677" e_stop="114417"/>
          <exon e_start="114201" e_stop="114076"/>
          <exon e_start="113946" e_stop="113743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATAGAAGCTCACTTTTCTCCTCAAGATCGAAGTCGGATCAAATCGCCTCCAACAATGTCTGCCATGATGGTAAGCCTGCAATTATATAGTTGAAATGAGAAGCAAATCTCAGTAGAGCTGTTTAAATTTCTTAAAATGTGTCAAAAAGTGGAGTATGACTCTGTGCACTATTTCTCATGGAAATTGCTGCTAGTTTAGTGTATGTAAATAAACATACATATGTATCCAAGGTACTGGATGTGGATGCGGAGCTTGCCAACCCTGTAAATCCACCCATGGTTGTGAACTTCAGCAAAAAGCTTGCTTTTTTAACTGAGACAACTGAAATTGCAATAGTGCCTATAGTTTGTTCCTAGTAAATTCAGATTAATGTGGTAAATTTGACATTGTTGAGAGTATGAAAGGTGTTATGGTGAAGATTTTGTGTTACATGTTTAAGATCACACTTAAAGGCTCCATATTTTCTGTTGCCAGGTTTTTATACTCTCGCTAATTTGTATTAGAAGACAATTTTATTACTGCTGGAATGAAATGGGTCCAAATAGAACAGCATGAATATAGAGAAATCTATAGCCAACAACTAATTTGGAAATGAGGCACAGTTGGTTTATTTATTTGCTATATACCTATGTGGCAATGATGTATTTTTCTGGACTTCTTTTTTCTGGTCAATCAATTTCTGATCTGGTGTCGTGGCTTTTTATGTAACAGCAACCTCAGATCATATTGCTTAAGGAAGGGACAGACACGTCTCAGGGGAAGGCACAGTTGGTGAGCAACATAAATGCATGTATGGCTGTGGCTGATGTGGTGCGTACCACCCTTGGTCCTAGGGGTATGGACAAGTTGATCCACGACGATAAAGGAAACACCACTATTTCAAATGATGGTGCCACTATAATGAAGCTTCTAGATATAATTCATCCTGCAGCAAAAATACTTGTTGACATCGCCAAGTCTCAAGACTCTGAGGTATGCTGTACTTGTGTTTATGCTATTTGTTGCTATAACATCAGTTGAATAGTGTAATACTGCTAAGTCATTTCCTGTGCTTTTACTTCTAAGGTACATGAGATGCGGCTCATAAGTTGACTGTATATGCAGTCGAGACACATGAGCTTGGAAAGTTTTTTGGTTGTCCCTTCACCCCTTTTTTACTACTAGTGCCTTGTTGTCCCTCTCTGCAGGTTGGTGATGGAACCACTACAGTTGTTCTGCTTGCAGGAGAATTTTTAAAGGAAGCCAAGCCTTTTGTCGAAGAGGGTGTCCACCCTCAAAATCTTATTCGTAGTTATCGAACCGCTTCTAATATGGTAGATTTTTCCTCCTCCTGGTTGCTTGTTCCTTTTTGTCTTACCCCTTTTGGCTATATTCACTGTCCCAGGAGGGTGCAAATGGTTTGTCATCGCAGTTTATTGAGTAATTTGGTATTGATTCTGTAGGCAATCGAGAAGGTAAAAGAATTGGCTGTTAGCATAGAGGGAAAAAGTTTGGAAGAAAAGAAAAGTCTGCTTGCAAAGTGTGCTGCTACAACTCTGTCATCAAAGCTCATTGGAGGGGAAAAGGAATTCTTTGCATCCATGGTTGTGGATGCTGTTCTTGCAATCGGAACTGATGATAGGCTGAACATGATCGGAATTAAGAAG</genome_strand>
        <mrna_strand>AGAATAGAAGCTCACTTTTCTCCTCAAGATCGAAGTCGGATCAAATCGCCTCCAACAATGTCTGCCATGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTCAGATCATATTGCTTAAGGAAGGGACAGACACGTCTCAGGGGAAGGCACAGTTGGTGAGCAACATAAATGCATGTATGGCTGTGGCTGATGTGGTGCGTACCACCCTTGGTCCTAGGGGTATGGACAAGTTGATCCACGACGATAAAGGAAACACCACTATTTCAAATGATGGTGCCACTATAATGAAGCTTCTAGATATAATTCATCCTGCAGCAAAAATACTTGTTGACATCGCCAAGTCTCAAGACTCTGAG.......................................................................................................................................................................................................................GTTGGTGATGGAACCACTACAGTTGTTCTGCTTGCAGGAGAATTTTTAAAGGAAGCCAAGCCTTTTGTCGAAGAGGGTGTCCACCCTCAAAATCTTATTCGTAGTTATCGAACCGCTTCTAATATG.................................................................................................................................GCAATCGAGAAGGTAAAAGAATTGGCTGTTAGCATAGAGGGAAAAAGTTTGGAAGAAAAGAAAAGTCTGCTTGCAAAGTGTGCTGCTACAACTCTGTCATCAAAGCTCATTGGAGGGGAAAAGGAATTCTTTGCATCCATGGTTGTGGATGCTGTTCTTGCAATCGGAACTGATGATAGGCTGAACATGATCGGAATTAAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E436749" ref_strand="+" ref_description="SGN-E436749 [cSTA-1-A3]">
      <seq>ctcactttctcctcaagatcaaagtcggatcaaatcgcctccaacaatgtctgccatgatgcaacctcagatcatattgctgaaggaagggacagacacgtcccaagggaaggcacagttggtgagcaacataaatgcatgtatggctgtggctgatgtggtgcgtaccacccttggccctaggggtatggacaagttgatccacgatgataaaggaaacaccactatttcgaatgatggtgccactataatgaagcttctagacataattcatcctgcagcaaaaatacttgttgacattgccaagtcccaagactctgaggttggtgatggaaccactacagttgttctgcttgcaggagaatttttaaaggaagccaagccttttgtcgaagagggtgtccaccctcaaaatcttattcgtagttatcgaaccgcttctaatatggcaatcgagaaggtaaaagaattggctgttagcatagagggaaaaagtttggaagaaaagaaaagtctgcttgcgaagtgtgctgctacaactctgtcatcaaagctcattggaggggaaaaggaattctttgcatccatggttgtggatgctgttcttgcatcggaactgatgataggctgaacatgattggaattaagaagtccctgnaggtctatgcgggattccttccttgtaatggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="115681" stop="113443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115381" g_stop="115320" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115319" i_stop="114678" i_length="642">
            <donor d_prob="0.868" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114677" g_stop="114417" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="322" r_length="261" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114416" i_stop="114202" i_length="215">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114201" g_stop="114076" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="448" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="114075" i_stop="113947" i_length="129">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113946" g_stop="113743" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="651" r_length="203" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E436749" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E436749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115381" e_stop="115320"/>
          <exon e_start="114677" e_stop="114417"/>
          <exon e_start="114201" e_stop="114076"/>
          <exon e_start="113946" e_stop="113743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACTTTTCTCCTCAAGATCGAAGTCGGATCAAATCGCCTCCAACAATGTCTGCCATGATGGTAAGCCTGCAATTATATAGTTGAAATGAGAAGCAAATCTCAGTAGAGCTGTTTAAATTTCTTAAAATGTGTCAAAAAGTGGAGTATGACTCTGTGCACTATTTCTCATGGAAATTGCTGCTAGTTTAGTGTATGTAAATAAACATACATATGTATCCAAGGTACTGGATGTGGATGCGGAGCTTGCCAACCCTGTAAATCCACCCATGGTTGTGAACTTCAGCAAAAAGCTTGCTTTTTTAACTGAGACAACTGAAATTGCAATAGTGCCTATAGTTTGTTCCTAGTAAATTCAGATTAATGTGGTAAATTTGACATTGTTGAGAGTATGAAAGGTGTTATGGTGAAGATTTTGTGTTACATGTTTAAGATCACACTTAAAGGCTCCATATTTTCTGTTGCCAGGTTTTTATACTCTCGCTAATTTGTATTAGAAGACAATTTTATTACTGCTGGAATGAAATGGGTCCAAATAGAACAGCATGAATATAGAGAAATCTATAGCCAACAACTAATTTGGAAATGAGGCACAGTTGGTTTATTTATTTGCTATATACCTATGTGGCAATGATGTATTTTTCTGGACTTCTTTTTTCTGGTCAATCAATTTCTGATCTGGTGTCGTGGCTTTTTATGTAACAGCAACCTCAGATCATATTGCTTAAGGAAGGGACAGACACGTCTCAGGGGAAGGCACAGTTGGTGAGCAACATAAATGCATGTATGGCTGTGGCTGATGTGGTGCGTACCACCCTTGGTCCTAGGGGTATGGACAAGTTGATCCACGACGATAAAGGAAACACCACTATTTCAAATGATGGTGCCACTATAATGAAGCTTCTAGATATAATTCATCCTGCAGCAAAAATACTTGTTGACATCGCCAAGTCTCAAGACTCTGAGGTATGCTGTACTTGTGTTTATGCTATTTGTTGCTATAACATCAGTTGAATAGTGTAATACTGCTAAGTCATTTCCTGTGCTTTTACTTCTAAGGTACATGAGATGCGGCTCATAAGTTGACTGTATATGCAGTCGAGACACATGAGCTTGGAAAGTTTTTTGGTTGTCCCTTCACCCCTTTTTTACTACTAGTGCCTTGTTGTCCCTCTCTGCAGGTTGGTGATGGAACCACTACAGTTGTTCTGCTTGCAGGAGAATTTTTAAAGGAAGCCAAGCCTTTTGTCGAAGAGGGTGTCCACCCTCAAAATCTTATTCGTAGTTATCGAACCGCTTCTAATATGGTAGATTTTTCCTCCTCCTGGTTGCTTGTTCCTTTTTGTCTTACCCCTTTTGGCTATATTCACTGTCCCAGGAGGGTGCAAATGGTTTGTCATCGCAGTTTATTGAGTAATTTGGTATTGATTCTGTAGGCAATCGAGAAGGTAAAAGAATTGGCTGTTAGCATAGAGGGAAAAAGTTTGGAAGAAAAGAAAAGTCTGCTTGCAAAGTGTGCTGCTACAACTCTGTCATCAAAGCTCATTGGAGGGGAAAAGGAATTCTTTGCATCCATGGTTGTGGATGCTGTTCTTGCAATCGGAACTGATGATAGGCTGAACATGATCGGAATTAAGAAG</genome_strand>
        <mrna_strand>CTCAC-TTTCTCCTCAAGATCAAAGTCGGATCAAATCGCCTCCAACAATGTCTGCCATGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTCAGATCATATTGCTGAAGGAAGGGACAGACACGTCCCAAGGGAAGGCACAGTTGGTGAGCAACATAAATGCATGTATGGCTGTGGCTGATGTGGTGCGTACCACCCTTGGCCCTAGGGGTATGGACAAGTTGATCCACGATGATAAAGGAAACACCACTATTTCGAATGATGGTGCCACTATAATGAAGCTTCTAGACATAATTCATCCTGCAGCAAAAATACTTGTTGACATTGCCAAGTCCCAAGACTCTGAG.......................................................................................................................................................................................................................GTTGGTGATGGAACCACTACAGTTGTTCTGCTTGCAGGAGAATTTTTAAAGGAAGCCAAGCCTTTTGTCGAAGAGGGTGTCCACCCTCAAAATCTTATTCGTAGTTATCGAACCGCTTCTAATATG.................................................................................................................................GCAATCGAGAAGGTAAAAGAATTGGCTGTTAGCATAGAGGGAAAAAGTTTGGAAGAAAAGAAAAGTCTGCTTGCGAAGTGTGCTGCTACAACTCTGTCATCAAAGCTCATTGGAGGGGAAAAGGAATTCTTTGCATCCATGGTTGTGGATGCTGTTCTTGC-ATCGGAACTGATGATAGGCTGAACATGATTGGAATTAAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441404" ref_strand="+" ref_description="SGN-E441404 [cSTA-30-E2]">
      <seq>gtcggatcaaatcgcctccaacaatgtctgccatgatgcaacctcagatcatattgctgaaggaagggacagacacgtcccaagggaaggcacagttggtgagcaacataaatgcatgtatggctgtggctgatgtggtgcgtaccacccttggccctaggggtatggacaagttgatccacgatgataaaggaaacaccactatttcgaatgatggtgccactataatgaagcttctagacataattcatcctgcagcaaaaatacttgttgacattgccaagtcccaagactctgaggttggtgatggaaccactacagttgttctgcttgcaggagaatttttaaaggaagccaagccttttgtcgaagagggtgtccaccctcaaaatcttattcgtagttatcgaaccgcttctaatatggcaatcgagaaggtaaaagaattggctgttagcatagagggaaaaagtttggaagaaaagaaaagtctgcttgcgaagtgtgctgctacaactctgtcatcaaagctcattggaggggaaaaggaattctttgcatccatggttgtggatgctgttcttgcaatcggaactgatgataggctgaacatgattgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="115657" stop="113452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115357" g_stop="115320" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115319" i_stop="114678" i_length="642">
            <donor d_prob="0.868" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114677" g_stop="114417" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="299" r_length="261" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114416" i_stop="114202" i_length="215">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114201" g_stop="114076" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="425" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="114075" i_stop="113947" i_length="129">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113946" g_stop="113752" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="620" r_length="195" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E441404" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E441404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115357" e_stop="115320"/>
          <exon e_start="114677" e_stop="114417"/>
          <exon e_start="114201" e_stop="114076"/>
          <exon e_start="113946" e_stop="113752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGGATCAAATCGCCTCCAACAATGTCTGCCATGATGGTAAGCCTGCAATTATATAGTTGAAATGAGAAGCAAATCTCAGTAGAGCTGTTTAAATTTCTTAAAATGTGTCAAAAAGTGGAGTATGACTCTGTGCACTATTTCTCATGGAAATTGCTGCTAGTTTAGTGTATGTAAATAAACATACATATGTATCCAAGGTACTGGATGTGGATGCGGAGCTTGCCAACCCTGTAAATCCACCCATGGTTGTGAACTTCAGCAAAAAGCTTGCTTTTTTAACTGAGACAACTGAAATTGCAATAGTGCCTATAGTTTGTTCCTAGTAAATTCAGATTAATGTGGTAAATTTGACATTGTTGAGAGTATGAAAGGTGTTATGGTGAAGATTTTGTGTTACATGTTTAAGATCACACTTAAAGGCTCCATATTTTCTGTTGCCAGGTTTTTATACTCTCGCTAATTTGTATTAGAAGACAATTTTATTACTGCTGGAATGAAATGGGTCCAAATAGAACAGCATGAATATAGAGAAATCTATAGCCAACAACTAATTTGGAAATGAGGCACAGTTGGTTTATTTATTTGCTATATACCTATGTGGCAATGATGTATTTTTCTGGACTTCTTTTTTCTGGTCAATCAATTTCTGATCTGGTGTCGTGGCTTTTTATGTAACAGCAACCTCAGATCATATTGCTTAAGGAAGGGACAGACACGTCTCAGGGGAAGGCACAGTTGGTGAGCAACATAAATGCATGTATGGCTGTGGCTGATGTGGTGCGTACCACCCTTGGTCCTAGGGGTATGGACAAGTTGATCCACGACGATAAAGGAAACACCACTATTTCAAATGATGGTGCCACTATAATGAAGCTTCTAGATATAATTCATCCTGCAGCAAAAATACTTGTTGACATCGCCAAGTCTCAAGACTCTGAGGTATGCTGTACTTGTGTTTATGCTATTTGTTGCTATAACATCAGTTGAATAGTGTAATACTGCTAAGTCATTTCCTGTGCTTTTACTTCTAAGGTACATGAGATGCGGCTCATAAGTTGACTGTATATGCAGTCGAGACACATGAGCTTGGAAAGTTTTTTGGTTGTCCCTTCACCCCTTTTTTACTACTAGTGCCTTGTTGTCCCTCTCTGCAGGTTGGTGATGGAACCACTACAGTTGTTCTGCTTGCAGGAGAATTTTTAAAGGAAGCCAAGCCTTTTGTCGAAGAGGGTGTCCACCCTCAAAATCTTATTCGTAGTTATCGAACCGCTTCTAATATGGTAGATTTTTCCTCCTCCTGGTTGCTTGTTCCTTTTTGTCTTACCCCTTTTGGCTATATTCACTGTCCCAGGAGGGTGCAAATGGTTTGTCATCGCAGTTTATTGAGTAATTTGGTATTGATTCTGTAGGCAATCGAGAAGGTAAAAGAATTGGCTGTTAGCATAGAGGGAAAAAGTTTGGAAGAAAAGAAAAGTCTGCTTGCAAAGTGTGCTGCTACAACTCTGTCATCAAAGCTCATTGGAGGGGAAAAGGAATTCTTTGCATCCATGGTTGTGGATGCTGTTCTTGCAATCGGAACTGATGATAGGCTGAACATGATCGGA</genome_strand>
        <mrna_strand>GTCGGATCAAATCGCCTCCAACAATGTCTGCCATGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTCAGATCATATTGCTGAAGGAAGGGACAGACACGTCCCAAGGGAAGGCACAGTTGGTGAGCAACATAAATGCATGTATGGCTGTGGCTGATGTGGTGCGTACCACCCTTGGCCCTAGGGGTATGGACAAGTTGATCCACGATGATAAAGGAAACACCACTATTTCGAATGATGGTGCCACTATAATGAAGCTTCTAGACATAATTCATCCTGCAGCAAAAATACTTGTTGACATTGCCAAGTCCCAAGACTCTGAG.......................................................................................................................................................................................................................GTTGGTGATGGAACCACTACAGTTGTTCTGCTTGCAGGAGAATTTTTAAAGGAAGCCAAGCCTTTTGTCGAAGAGGGTGTCCACCCTCAAAATCTTATTCGTAGTTATCGAACCGCTTCTAATATG.................................................................................................................................GCAATCGAGAAGGTAAAAGAATTGGCTGTTAGCATAGAGGGAAAAAGTTTGGAAGAAAAGAAAAGTCTGCTTGCGAAGTGTGCTGCTACAACTCTGTCATCAAAGCTCATTGGAGGGGAAAAGGAATTCTTTGCATCCATGGTTGTGGATGCTGTTCTTGCAATCGGAACTGATGATAGGCTGAACATGATTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442686" ref_strand="+" ref_description="SGN-E442686 [cSTA-34-F3]">
      <seq>caagatcaaagtcggatcaaatcgcctccaacaatgtctgccatgatgcaacctcagatcatattgctgaaggaagggacagacacgtcccaagggaaggcacagttggtgagcaacataaatgcatgtatggctgtggctgatgtggtgcgtaccacccttggccctaggggtatggacaagttgatccacgatgataaaggaaacaccactatttcgaatgatggtgccactataatgaagcttctagacataattcatcctgcagcaaaaatacttgttgacattgccaagtcccaagactctgaggttggtgatggaaccactacagttgttctgcttgcaggagaatttttaaaggaagccaagccttttgtcgaagagggtgtccaccctcaaaatcttattcgtagttatcgaaccgcttctaatatggcaatcgagaaggtaaaagaattggctgttagcatagagggaaaaagtttggaagaaaagaaaagtctgcttgcgaagtgtgctgctacaactctgtcatcaaagctcattggaggggaaaaggaattctntgcatccatggttgtggatgctgttcttgcaatcggaactgatgataggctgaacatgattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="115667" stop="113453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115367" g_stop="115320" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115319" i_stop="114678" i_length="642">
            <donor d_prob="0.868" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114677" g_stop="114417" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="309" r_length="261" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114416" i_stop="114202" i_length="215">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114201" g_stop="114076" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="435" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="114075" i_stop="113947" i_length="129">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113946" g_stop="113753" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="629" r_length="194" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E442686" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E442686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115367" e_stop="115320"/>
          <exon e_start="114677" e_stop="114417"/>
          <exon e_start="114201" e_stop="114076"/>
          <exon e_start="113946" e_stop="113753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGATCGAAGTCGGATCAAATCGCCTCCAACAATGTCTGCCATGATGGTAAGCCTGCAATTATATAGTTGAAATGAGAAGCAAATCTCAGTAGAGCTGTTTAAATTTCTTAAAATGTGTCAAAAAGTGGAGTATGACTCTGTGCACTATTTCTCATGGAAATTGCTGCTAGTTTAGTGTATGTAAATAAACATACATATGTATCCAAGGTACTGGATGTGGATGCGGAGCTTGCCAACCCTGTAAATCCACCCATGGTTGTGAACTTCAGCAAAAAGCTTGCTTTTTTAACTGAGACAACTGAAATTGCAATAGTGCCTATAGTTTGTTCCTAGTAAATTCAGATTAATGTGGTAAATTTGACATTGTTGAGAGTATGAAAGGTGTTATGGTGAAGATTTTGTGTTACATGTTTAAGATCACACTTAAAGGCTCCATATTTTCTGTTGCCAGGTTTTTATACTCTCGCTAATTTGTATTAGAAGACAATTTTATTACTGCTGGAATGAAATGGGTCCAAATAGAACAGCATGAATATAGAGAAATCTATAGCCAACAACTAATTTGGAAATGAGGCACAGTTGGTTTATTTATTTGCTATATACCTATGTGGCAATGATGTATTTTTCTGGACTTCTTTTTTCTGGTCAATCAATTTCTGATCTGGTGTCGTGGCTTTTTATGTAACAGCAACCTCAGATCATATTGCTTAAGGAAGGGACAGACACGTCTCAGGGGAAGGCACAGTTGGTGAGCAACATAAATGCATGTATGGCTGTGGCTGATGTGGTGCGTACCACCCTTGGTCCTAGGGGTATGGACAAGTTGATCCACGACGATAAAGGAAACACCACTATTTCAAATGATGGTGCCACTATAATGAAGCTTCTAGATATAATTCATCCTGCAGCAAAAATACTTGTTGACATCGCCAAGTCTCAAGACTCTGAGGTATGCTGTACTTGTGTTTATGCTATTTGTTGCTATAACATCAGTTGAATAGTGTAATACTGCTAAGTCATTTCCTGTGCTTTTACTTCTAAGGTACATGAGATGCGGCTCATAAGTTGACTGTATATGCAGTCGAGACACATGAGCTTGGAAAGTTTTTTGGTTGTCCCTTCACCCCTTTTTTACTACTAGTGCCTTGTTGTCCCTCTCTGCAGGTTGGTGATGGAACCACTACAGTTGTTCTGCTTGCAGGAGAATTTTTAAAGGAAGCCAAGCCTTTTGTCGAAGAGGGTGTCCACCCTCAAAATCTTATTCGTAGTTATCGAACCGCTTCTAATATGGTAGATTTTTCCTCCTCCTGGTTGCTTGTTCCTTTTTGTCTTACCCCTTTTGGCTATATTCACTGTCCCAGGAGGGTGCAAATGGTTTGTCATCGCAGTTTATTGAGTAATTTGGTATTGATTCTGTAGGCAATCGAGAAGGTAAAAGAATTGGCTGTTAGCATAGAGGGAAAAAGTTTGGAAGAAAAGAAAAGTCTGCTTGCAAAGTGTGCTGCTACAACTCTGTCATCAAAGCTCATTGGAGGGGAAAAGGAATTCTTTGCATCCATGGTTGTGGATGCTGTTCTTGCAATCGGAACTGATGATAGGCTGAACATGATCGG</genome_strand>
        <mrna_strand>CAAGATCAAAGTCGGATCAAATCGCCTCCAACAATGTCTGCCATGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTCAGATCATATTGCTGAAGGAAGGGACAGACACGTCCCAAGGGAAGGCACAGTTGGTGAGCAACATAAATGCATGTATGGCTGTGGCTGATGTGGTGCGTACCACCCTTGGCCCTAGGGGTATGGACAAGTTGATCCACGATGATAAAGGAAACACCACTATTTCGAATGATGGTGCCACTATAATGAAGCTTCTAGACATAATTCATCCTGCAGCAAAAATACTTGTTGACATTGCCAAGTCCCAAGACTCTGAG.......................................................................................................................................................................................................................GTTGGTGATGGAACCACTACAGTTGTTCTGCTTGCAGGAGAATTTTTAAAGGAAGCCAAGCCTTTTGTCGAAGAGGGTGTCCACCCTCAAAATCTTATTCGTAGTTATCGAACCGCTTCTAATATG.................................................................................................................................GCAATCGAGAAGGTAAAAGAATTGGCTGTTAGCATAGAGGGAAAAAGTTTGGAAGAAAAGAAAAGTCTGCTTGCGAAGTGTGCTGCTACAACTCTGTCATCAAAGCTCATTGGAGGGGAAAAGGAATTCTNTGCATCCATGGTTGTGGATGCTGTTCTTGCAATCGGAACTGATGATAGGCTGAACATGATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315513" ref_strand="+" ref_description="SGN-E315513 [cTOA-22-N8]">
      <seq>tagaagctcacttttctcctcaagatcgaagtcggatcaaatcgcctccaacaatgtctgccatgatgcaacctcagatcatattgcttaaggaagggacagacacgtctcaggggaaggcacagttggtgagcaacataaatgcatgtatggctgtggctgatgtggtgcgtaccacccttggtcctaggggtatggacaagttgatccacgacgataaaggaaacaccactatttcaaatgatggtgccactataatgaagcttctagatataattcatcctgcagcaaaaatacttgttgacatcgccaagtctcaagactctgaggttggtgatggaaccactacagttgttctgcttgcaggagaatttttaaaggaagccaagccttttgtcgaagagggtgtccaccctcaaaatcttattcgtagttatcgaaccgcttctaatatggcaatcgagaaggtaaaagaattggctgttagcatagagggaaaaagtttggaagaaaagaaaagtctgcttgcaaagtgtgctgctacaactctgtcatcaaagctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="115687" stop="113538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115387" g_stop="115320" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115319" i_stop="114678" i_length="642">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114677" g_stop="114417" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="329" r_length="261" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114416" i_stop="114202" i_length="215">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114201" g_stop="114076" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="455" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="114075" i_stop="113947" i_length="129">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113946" g_stop="113838" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="564" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E315513" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115387" e_stop="115320"/>
          <exon e_start="114677" e_stop="114417"/>
          <exon e_start="114201" e_stop="114076"/>
          <exon e_start="113946" e_stop="113838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAGCTCACTTTTCTCCTCAAGATCGAAGTCGGATCAAATCGCCTCCAACAATGTCTGCCATGATGGTAAGCCTGCAATTATATAGTTGAAATGAGAAGCAAATCTCAGTAGAGCTGTTTAAATTTCTTAAAATGTGTCAAAAAGTGGAGTATGACTCTGTGCACTATTTCTCATGGAAATTGCTGCTAGTTTAGTGTATGTAAATAAACATACATATGTATCCAAGGTACTGGATGTGGATGCGGAGCTTGCCAACCCTGTAAATCCACCCATGGTTGTGAACTTCAGCAAAAAGCTTGCTTTTTTAACTGAGACAACTGAAATTGCAATAGTGCCTATAGTTTGTTCCTAGTAAATTCAGATTAATGTGGTAAATTTGACATTGTTGAGAGTATGAAAGGTGTTATGGTGAAGATTTTGTGTTACATGTTTAAGATCACACTTAAAGGCTCCATATTTTCTGTTGCCAGGTTTTTATACTCTCGCTAATTTGTATTAGAAGACAATTTTATTACTGCTGGAATGAAATGGGTCCAAATAGAACAGCATGAATATAGAGAAATCTATAGCCAACAACTAATTTGGAAATGAGGCACAGTTGGTTTATTTATTTGCTATATACCTATGTGGCAATGATGTATTTTTCTGGACTTCTTTTTTCTGGTCAATCAATTTCTGATCTGGTGTCGTGGCTTTTTATGTAACAGCAACCTCAGATCATATTGCTTAAGGAAGGGACAGACACGTCTCAGGGGAAGGCACAGTTGGTGAGCAACATAAATGCATGTATGGCTGTGGCTGATGTGGTGCGTACCACCCTTGGTCCTAGGGGTATGGACAAGTTGATCCACGACGATAAAGGAAACACCACTATTTCAAATGATGGTGCCACTATAATGAAGCTTCTAGATATAATTCATCCTGCAGCAAAAATACTTGTTGACATCGCCAAGTCTCAAGACTCTGAGGTATGCTGTACTTGTGTTTATGCTATTTGTTGCTATAACATCAGTTGAATAGTGTAATACTGCTAAGTCATTTCCTGTGCTTTTACTTCTAAGGTACATGAGATGCGGCTCATAAGTTGACTGTATATGCAGTCGAGACACATGAGCTTGGAAAGTTTTTTGGTTGTCCCTTCACCCCTTTTTTACTACTAGTGCCTTGTTGTCCCTCTCTGCAGGTTGGTGATGGAACCACTACAGTTGTTCTGCTTGCAGGAGAATTTTTAAAGGAAGCCAAGCCTTTTGTCGAAGAGGGTGTCCACCCTCAAAATCTTATTCGTAGTTATCGAACCGCTTCTAATATGGTAGATTTTTCCTCCTCCTGGTTGCTTGTTCCTTTTTGTCTTACCCCTTTTGGCTATATTCACTGTCCCAGGAGGGTGCAAATGGTTTGTCATCGCAGTTTATTGAGTAATTTGGTATTGATTCTGTAGGCAATCGAGAAGGTAAAAGAATTGGCTGTTAGCATAGAGGGAAAAAGTTTGGAAGAAAAGAAAAGTCTGCTTGCAAAGTGTGCTGCTACAACTCTGTCATCAAAGCTCA</genome_strand>
        <mrna_strand>TAGAAGCTCACTTTTCTCCTCAAGATCGAAGTCGGATCAAATCGCCTCCAACAATGTCTGCCATGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTCAGATCATATTGCTTAAGGAAGGGACAGACACGTCTCAGGGGAAGGCACAGTTGGTGAGCAACATAAATGCATGTATGGCTGTGGCTGATGTGGTGCGTACCACCCTTGGTCCTAGGGGTATGGACAAGTTGATCCACGACGATAAAGGAAACACCACTATTTCAAATGATGGTGCCACTATAATGAAGCTTCTAGATATAATTCATCCTGCAGCAAAAATACTTGTTGACATCGCCAAGTCTCAAGACTCTGAG.......................................................................................................................................................................................................................GTTGGTGATGGAACCACTACAGTTGTTCTGCTTGCAGGAGAATTTTTAAAGGAAGCCAAGCCTTTTGTCGAAGAGGGTGTCCACCCTCAAAATCTTATTCGTAGTTATCGAACCGCTTCTAATATG.................................................................................................................................GCAATCGAGAAGGTAAAAGAATTGGCTGTTAGCATAGAGGGAAAAAGTTTGGAAGAAAAGAAAAGTCTGCTTGCAAAGTGTGCTGCTACAACTCTGTCATCAAAGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445337" ref_strand="+" ref_description="SGN-E445337 [cSTA-45-A12]">
      <seq>aaaggaaaaaccctagaagctcactttctccccaagatcaaagtcggatcaaatcgcctccaacaatgtctgccatgatgcaacctcagatcatattgctgaaggaagggacagacacgtcccaagggaaggcacagttggtgagcaacataaatgcatgtatggctgtggctgatgtggtgcgtaccacccttggccctaggggtatggacaagttgatccacgacgataaaggaaacaccactatttcgaatgatggtgccactataatgaagcttctagacataattcatcctgcagcaaaaatacttgttgacattgccaagtcccaagactctgaggttggtgatggaaccactacagttgttctgcttgcaggagaatttttaaaggaagccaaaccttttgtcgaagatggtgtccaccctcaaaatcttattcgtagttatcgaaccgcttctaatatggcaatcgagaaggtaaaagaattggctgttagcatagagggaaaaagtttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="115687" stop="113594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115405" g_stop="115320" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115319" i_stop="114678" i_length="642">
            <donor d_prob="0.868" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114677" g_stop="114417" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="341" r_length="261" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114416" i_stop="114202" i_length="215">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114201" g_stop="114076" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="467" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="114075" i_stop="113947" i_length="129">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113946" g_stop="113894" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="520" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E445337" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E445337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115405" e_stop="115320"/>
          <exon e_start="114677" e_stop="114417"/>
          <exon e_start="114201" e_stop="114076"/>
          <exon e_start="113946" e_stop="113894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGAAAAACCCTAGAATAGAAGCTCACTTTTCTCCTCAAGATCGAAGTCGGATCAAATCGCCTCCAACAATGTCTGCCATGATGGTAAGCCTGCAATTATATAGTTGAAATGAGAAGCAAATCTCAGTAGAGCTGTTTAAATTTCTTAAAATGTGTCAAAAAGTGGAGTATGACTCTGTGCACTATTTCTCATGGAAATTGCTGCTAGTTTAGTGTATGTAAATAAACATACATATGTATCCAAGGTACTGGATGTGGATGCGGAGCTTGCCAACCCTGTAAATCCACCCATGGTTGTGAACTTCAGCAAAAAGCTTGCTTTTTTAACTGAGACAACTGAAATTGCAATAGTGCCTATAGTTTGTTCCTAGTAAATTCAGATTAATGTGGTAAATTTGACATTGTTGAGAGTATGAAAGGTGTTATGGTGAAGATTTTGTGTTACATGTTTAAGATCACACTTAAAGGCTCCATATTTTCTGTTGCCAGGTTTTTATACTCTCGCTAATTTGTATTAGAAGACAATTTTATTACTGCTGGAATGAAATGGGTCCAAATAGAACAGCATGAATATAGAGAAATCTATAGCCAACAACTAATTTGGAAATGAGGCACAGTTGGTTTATTTATTTGCTATATACCTATGTGGCAATGATGTATTTTTCTGGACTTCTTTTTTCTGGTCAATCAATTTCTGATCTGGTGTCGTGGCTTTTTATGTAACAGCAACCTCAGATCATATTGCTTAAGGAAGGGACAGACACGTCTCAGGGGAAGGCACAGTTGGTGAGCAACATAAATGCATGTATGGCTGTGGCTGATGTGGTGCGTACCACCCTTGGTCCTAGGGGTATGGACAAGTTGATCCACGACGATAAAGGAAACACCACTATTTCAAATGATGGTGCCACTATAATGAAGCTTCTAGATATAATTCATCCTGCAGCAAAAATACTTGTTGACATCGCCAAGTCTCAAGACTCTGAGGTATGCTGTACTTGTGTTTATGCTATTTGTTGCTATAACATCAGTTGAATAGTGTAATACTGCTAAGTCATTTCCTGTGCTTTTACTTCTAAGGTACATGAGATGCGGCTCATAAGTTGACTGTATATGCAGTCGAGACACATGAGCTTGGAAAGTTTTTTGGTTGTCCCTTCACCCCTTTTTTACTACTAGTGCCTTGTTGTCCCTCTCTGCAGGTTGGTGATGGAACCACTACAGTTGTTCTGCTTGCAGGAGAATTTTTAAAGGAAGCCAAGCCTTTTGTCGAAGAGGGTGTCCACCCTCAAAATCTTATTCGTAGTTATCGAACCGCTTCTAATATGGTAGATTTTTCCTCCTCCTGGTTGCTTGTTCCTTTTTGTCTTACCCCTTTTGGCTATATTCACTGTCCCAGGAGGGTGCAAATGGTTTGTCATCGCAGTTTATTGAGTAATTTGGTATTGATTCTGTAGGCAATCGAGAAGGTAAAAGAATTGGCTGTTAGCATAGAGGGAAAAAGTTTGGA</genome_strand>
        <mrna_strand>AAAGGAAAAACCCTAGA-----AGCTCACT-TTCTCCCCAAGATCAAAGTCGGATCAAATCGCCTCCAACAATGTCTGCCATGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTCAGATCATATTGCTGAAGGAAGGGACAGACACGTCCCAAGGGAAGGCACAGTTGGTGAGCAACATAAATGCATGTATGGCTGTGGCTGATGTGGTGCGTACCACCCTTGGCCCTAGGGGTATGGACAAGTTGATCCACGACGATAAAGGAAACACCACTATTTCGAATGATGGTGCCACTATAATGAAGCTTCTAGACATAATTCATCCTGCAGCAAAAATACTTGTTGACATTGCCAAGTCCCAAGACTCTGAG.......................................................................................................................................................................................................................GTTGGTGATGGAACCACTACAGTTGTTCTGCTTGCAGGAGAATTTTTAAAGGAAGCCAAACCTTTTGTCGAAGATGGTGTCCACCCTCAAAATCTTATTCGTAGTTATCGAACCGCTTCTAATATG.................................................................................................................................GCAATCGAGAAGGTAAAAGAATTGGCTGTTAGCATAGAGGGAAAAAGTTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444981" ref_strand="+" ref_description="SGN-E444981 [cSTA-44-K24]">
      <seq>tagaagctcactttctcctcaagatcaaagtcggatcaaatcgcctccaacaatgtctgccatgatgcaacctcagatcatattgctgaaggaagggacagacacgtcccaagggaaggcacagttggtgagcaacataaatgcatgtatggctgtggctgatgtggtgcgtaccacccttggccctaggggtatggacaagttgatccacgatgataaaggaaacaccactatttcgaatgatggtgccactataatgaagcttctagacataattcatcctgcagcaaaaatacttgttgacattgccaagtcccaagactctgaggttggtgatggaaccactacagttgttctgcttgcaggagaatttttaaaggaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="115687" stop="113846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115387" g_stop="115320" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115319" i_stop="114678" i_length="642">
            <donor d_prob="0.868" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114677" g_stop="114417" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="328" r_length="261" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114416" i_stop="114202" i_length="215">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114201" g_stop="114146" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="384" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E444981" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E444981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115387" e_stop="115320"/>
          <exon e_start="114677" e_stop="114417"/>
          <exon e_start="114201" e_stop="114146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAGCTCACTTTTCTCCTCAAGATCGAAGTCGGATCAAATCGCCTCCAACAATGTCTGCCATGATGGTAAGCCTGCAATTATATAGTTGAAATGAGAAGCAAATCTCAGTAGAGCTGTTTAAATTTCTTAAAATGTGTCAAAAAGTGGAGTATGACTCTGTGCACTATTTCTCATGGAAATTGCTGCTAGTTTAGTGTATGTAAATAAACATACATATGTATCCAAGGTACTGGATGTGGATGCGGAGCTTGCCAACCCTGTAAATCCACCCATGGTTGTGAACTTCAGCAAAAAGCTTGCTTTTTTAACTGAGACAACTGAAATTGCAATAGTGCCTATAGTTTGTTCCTAGTAAATTCAGATTAATGTGGTAAATTTGACATTGTTGAGAGTATGAAAGGTGTTATGGTGAAGATTTTGTGTTACATGTTTAAGATCACACTTAAAGGCTCCATATTTTCTGTTGCCAGGTTTTTATACTCTCGCTAATTTGTATTAGAAGACAATTTTATTACTGCTGGAATGAAATGGGTCCAAATAGAACAGCATGAATATAGAGAAATCTATAGCCAACAACTAATTTGGAAATGAGGCACAGTTGGTTTATTTATTTGCTATATACCTATGTGGCAATGATGTATTTTTCTGGACTTCTTTTTTCTGGTCAATCAATTTCTGATCTGGTGTCGTGGCTTTTTATGTAACAGCAACCTCAGATCATATTGCTTAAGGAAGGGACAGACACGTCTCAGGGGAAGGCACAGTTGGTGAGCAACATAAATGCATGTATGGCTGTGGCTGATGTGGTGCGTACCACCCTTGGTCCTAGGGGTATGGACAAGTTGATCCACGACGATAAAGGAAACACCACTATTTCAAATGATGGTGCCACTATAATGAAGCTTCTAGATATAATTCATCCTGCAGCAAAAATACTTGTTGACATCGCCAAGTCTCAAGACTCTGAGGTATGCTGTACTTGTGTTTATGCTATTTGTTGCTATAACATCAGTTGAATAGTGTAATACTGCTAAGTCATTTCCTGTGCTTTTACTTCTAAGGTACATGAGATGCGGCTCATAAGTTGACTGTATATGCAGTCGAGACACATGAGCTTGGAAAGTTTTTTGGTTGTCCCTTCACCCCTTTTTTACTACTAGTGCCTTGTTGTCCCTCTCTGCAGGTTGGTGATGGAACCACTACAGTTGTTCTGCTTGCAGGAGAATTTTTAAAGGAAGC</genome_strand>
        <mrna_strand>TAGAAGCTCAC-TTTCTCCTCAAGATCAAAGTCGGATCAAATCGCCTCCAACAATGTCTGCCATGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTCAGATCATATTGCTGAAGGAAGGGACAGACACGTCCCAAGGGAAGGCACAGTTGGTGAGCAACATAAATGCATGTATGGCTGTGGCTGATGTGGTGCGTACCACCCTTGGCCCTAGGGGTATGGACAAGTTGATCCACGATGATAAAGGAAACACCACTATTTCGAATGATGGTGCCACTATAATGAAGCTTCTAGACATAATTCATCCTGCAGCAAAAATACTTGTTGACATTGCCAAGTCCCAAGACTCTGAG.......................................................................................................................................................................................................................GTTGGTGATGGAACCACTACAGTTGTTCTGCTTGCAGGAGAATTTTTAAAGGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302950" ref_strand="+" ref_description="SGN-E302950 [cLEW-26-J19]">
      <seq>aaaaaccctatgaatagaagctcacttttctcctcaagatcgaagtcggatcaaatcgcctccaacaatgtctgccatgatgcaacctcacatcatattgcttaaggaagggacagacacgtctcaggggaaggcacagttggtgagcaacataaatgcatgtatggctgaggctgatgtggtgcgtaccacccttggtcctatgggtatggacaagttgatccacgacgataaaggaaacaccactatttgaaatgatggtgccactataatgaagcttctagatataattcatcctgcaacaaaaatacttgttgacatctccaagtctcaagactctgaggttggtgatggaaccactacacttgttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="115700" stop="113873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115400" g_stop="115320" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115319" i_stop="114678" i_length="642">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114677" g_stop="114417" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="343" r_length="261" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114416" i_stop="114202" i_length="215">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114201" g_stop="114173" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="372" r_length="29" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E302950" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115400" e_stop="115320"/>
          <exon e_start="114677" e_stop="114417"/>
          <exon e_start="114201" e_stop="114173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCCTA-GAATAGAAGCTCACTTTTCTCCTCAAGATCGAAGTCGGATCAAATCGCCTCCAACAATGTCTGCCATGATGGTAAGCCTGCAATTATATAGTTGAAATGAGAAGCAAATCTCAGTAGAGCTGTTTAAATTTCTTAAAATGTGTCAAAAAGTGGAGTATGACTCTGTGCACTATTTCTCATGGAAATTGCTGCTAGTTTAGTGTATGTAAATAAACATACATATGTATCCAAGGTACTGGATGTGGATGCGGAGCTTGCCAACCCTGTAAATCCACCCATGGTTGTGAACTTCAGCAAAAAGCTTGCTTTTTTAACTGAGACAACTGAAATTGCAATAGTGCCTATAGTTTGTTCCTAGTAAATTCAGATTAATGTGGTAAATTTGACATTGTTGAGAGTATGAAAGGTGTTATGGTGAAGATTTTGTGTTACATGTTTAAGATCACACTTAAAGGCTCCATATTTTCTGTTGCCAGGTTTTTATACTCTCGCTAATTTGTATTAGAAGACAATTTTATTACTGCTGGAATGAAATGGGTCCAAATAGAACAGCATGAATATAGAGAAATCTATAGCCAACAACTAATTTGGAAATGAGGCACAGTTGGTTTATTTATTTGCTATATACCTATGTGGCAATGATGTATTTTTCTGGACTTCTTTTTTCTGGTCAATCAATTTCTGATCTGGTGTCGTGGCTTTTTATGTAACAGCAACCTCAGATCATATTGCTTAAGGAAGGGACAGACACGTCTCAGGGGAAGGCACAGTTGGTGAGCAACATAAATGCATGTATGGCTGTGGCTGATGTGGTGCGTACCACCCTTGGTCCTAGGGGTATGGACAAGTTGATCCACGACGATAAAGGAAACACCACTATTTCAAATGATGGTGCCACTATAATGAAGCTTCTAGATATAATTCATCCTGCAGCAAAAATACTTGTTGACATCGCCAAGTCTCAAGACTCTGAGGTATGCTGTACTTGTGTTTATGCTATTTGTTGCTATAACATCAGTTGAATAGTGTAATACTGCTAAGTCATTTCCTGTGCTTTTACTTCTAAGGTACATGAGATGCGGCTCATAAGTTGACTGTATATGCAGTCGAGACACATGAGCTTGGAAAGTTTTTTGGTTGTCCCTTCACCCCTTTTTTACTACTAGTGCCTTGTTGTCCCTCTCTGCAGGTTGGTGATGGAACCACTACAGTTGTTCT</genome_strand>
        <mrna_strand>AAAAACCCTATGAATAGAAGCTCACTTTTCTCCTCAAGATCGAAGTCGGATCAAATCGCCTCCAACAATGTCTGCCATGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTCACATCATATTGCTTAAGGAAGGGACAGACACGTCTCAGGGGAAGGCACAGTTGGTGAGCAACATAAATGCATGTATGGCTGAGGCTGATGTGGTGCGTACCACCCTTGGTCCTATGGGTATGGACAAGTTGATCCACGACGATAAAGGAAACACCACTATTTGAAATGATGGTGCCACTATAATGAAGCTTCTAGATATAATTCATCCTGCAACAAAAATACTTGTTGACATCTCCAAGTCTCAAGACTCTGAG.......................................................................................................................................................................................................................GTTGGTGATGGAACCACTACACTTGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444973" ref_strand="+" ref_description="SGN-E444973 [cSTA-44-K12]">
      <seq>ttttaagcgcactttctcctcaagatcagggtcggatcaaatcgcctccaacaatgtctgccatgatgcaacctcatatcatattgctgaaggaagggacagacacttcccaagggaaggcacagttggtgagcaacataaatgcatgtatggctgtggctgatgtggtgcgtaccacccttggccctaggggtatggacaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0118M03-epOt5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0118M03.1" temp_strand="-" temp_description="C06SLm0118M03.1  AC211085.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0118M03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="115657" stop="114242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115388" g_stop="115320" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.884"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115319" i_stop="114678" i_length="642">
            <donor d_prob="0.868" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114677" g_stop="114542" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="204" r_length="136" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0118M03.1" gen_strand="-" ref_id="SGN-E444973" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>205</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0118M03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E444973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115388" e_stop="115320"/>
          <exon e_start="114677" e_stop="114542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGAAGCTCACTTTTCTCCTCAAGATCGAAGTCGGATCAAATCGCCTCCAACAATGTCTGCCATGATGGTAAGCCTGCAATTATATAGTTGAAATGAGAAGCAAATCTCAGTAGAGCTGTTTAAATTTCTTAAAATGTGTCAAAAAGTGGAGTATGACTCTGTGCACTATTTCTCATGGAAATTGCTGCTAGTTTAGTGTATGTAAATAAACATACATATGTATCCAAGGTACTGGATGTGGATGCGGAGCTTGCCAACCCTGTAAATCCACCCATGGTTGTGAACTTCAGCAAAAAGCTTGCTTTTTTAACTGAGACAACTGAAATTGCAATAGTGCCTATAGTTTGTTCCTAGTAAATTCAGATTAATGTGGTAAATTTGACATTGTTGAGAGTATGAAAGGTGTTATGGTGAAGATTTTGTGTTACATGTTTAAGATCACACTTAAAGGCTCCATATTTTCTGTTGCCAGGTTTTTATACTCTCGCTAATTTGTATTAGAAGACAATTTTATTACTGCTGGAATGAAATGGGTCCAAATAGAACAGCATGAATATAGAGAAATCTATAGCCAACAACTAATTTGGAAATGAGGCACAGTTGGTTTATTTATTTGCTATATACCTATGTGGCAATGATGTATTTTTCTGGACTTCTTTTTTCTGGTCAATCAATTTCTGATCTGGTGTCGTGGCTTTTTATGTAACAGCAACCTCAGATCATATTGCTTAAGGAAGGGACAGACACGTCTCAGGGGAAGGCACAGTTGGTGAGCAACATAAATGCATGTATGGCTGTGGCTGATGTGGTGCGTACCACCCTTGGTCCTAGGGGTATGGACAAGT</genome_strand>
        <mrna_strand>TTTTAAGCGCAC-TTTCTCCTCAAGATCAGGGTCGGATCAAATCGCCTCCAACAATGTCTGCCATGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTCATATCATATTGCTGAAGGAAGGGACAGACACTTCCCAAGGGAAGGCACAGTTGGTGAGCAACATAAATGCATGTATGGCTGTGGCTGATGTGGTGCGTACCACCCTTGGCCCTAGGGGTATGGACAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>181</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="2336" PGL_stop="4385"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2336" e_stop="2568"/>
            <exon e_start="3136" e_stop="3388"/>
            <exon e_start="3509" e_stop="3903"/>
            <exon e_start="4313" e_stop="4385"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.934" e_score="1.000"/>
          <exon-intron don_prob="0.725" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.968"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2336" e_stop="2568" e_length="233"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.934">
            <gDNA_intron_boundary i_start="2569" i_stop="3135" i_length="567"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="3136" e_stop="3388" e_length="253"/>
          </exon>
          <intron i_serial="2" don_prob="0.725" acc_prob="0.978">
            <gDNA_intron_boundary i_start="3389" i_stop="3508" i_length="120"/>
          </intron>
          <exon e_serial="3" e_score="0.968">
            <gDNA_exon_boundary e_start="3509" e_stop="3903" e_length="395"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="3904" i_stop="4312" i_length="409"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="4313" e_stop="4385" e_length="73"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2336" stop="2568"/>
              <exon start="3136" stop="3388"/>
              <exon start="3509" stop="3839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3529" stop="3903"/>
              <exon start="4313" stop="4385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210155" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGAAGTGATTAGTTTGAATCAACAAATCAGAAATTTTGAGAATGTGACATTGCCAGAGTTGGAGGAGCAGACAAAGTGTAAAAGCAAAGAATCATTGAAGAATTACTTGTTTGTTGTGGGAAGTGGTGGAAATGACTACTCACTCAACTACTTCTTGGGCTTAGCTACCAAAAATATCACTATTCAAGACTTTACTGCTAATTTGACCATGACACTTTCTCACCAACTCAAG : AGGTTGTATGATATGGGAGCTAGAAAATTTGTGTTGATGGCATTATATCCCAATGGTTGCAGCCCAATGGCCAGAGCTAGAAATCCAAATGCCACTGGCTGTATACAGATTTTGAATGATGCTGCACAACTCTTCAACACTAACTTGAGGACTTTGGTTGATTCCCCAACTCTTCAAATGCCTGATTCCACAATAGTCATTGTCAATGCCTACAAAATCATTATGGATATCTTACAAAATCCTACTCCTTATG : GTTTTAGTGATACCAAGAATCCATGTTGTGATGTTGCAAGAATAGAAGAAGGTGGAACAGGAACTTTATGCAAAAACGGAGGGATTGTTTGTTCAGATAGGAATGTGAATGTGTATTTTGATGGGTTGCATCCAACAGAAGCAGTGAACATTGTGCTTGCTAATAAGGCTTTTTCTTCCAATCTCATAGATGAAGTCTACCCTACAAATGTTCGTCTCTTATCACACTAATTTATCAAACCAACAATGTATTTCGAGTTATGAAAGAGTATCCATATTATGTTATTCAAACAAATATATGAGGTGAACAATTATACATGAGAAAATAAACTATGAATTTCATATGAATGGCTTATATCTATAAAATATGAGAGTAACATCCGAGGCTTATTATTT : TANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> V  K  *  L  V  *  I  N  K  S  E  I  L  R  M  *  H  C  Q  S  W  R  S  R  Q  S  V  K  A  K  N  H  *  R  I  T  C  L  L  W  E  V  V  E  M  T  T  H  S  T  T  S  W  A  *  L  P  K  I  S  L  F  K  T  L  L  L  I  *  P  *  H  F  L  T  N  S  R :   G  C  M  I  W  E  L  E  N  L  C  *  W  H  Y  I  P  M  V  A  A  Q  W  P  E  L  E  I  Q  M  P  L  A  V  Y  R  F  *  M  M  L  H  N  S  S  T  L  T  *  G  L  W  L  I  P  Q  L  F  K  C  L  I  P  Q  *  S  L  S  M  P  T  K  S  L  W  I  S  Y  K  I  L  L  L  M  :  V  L  V  I  P  R  I  H  V  V  M  L  Q  E  *  K  K  V  E  Q  E  L  Y  A  K  T  E  G  L  F  V  Q  I  G  M  *  M  C  I  L  M  G  C  I  Q  Q  K  Q  *  T  L  C  L  L  I  R  L  F  L  P  I  S  *  M  K  S  T  L  Q  M  F  V  S  Y  H  T  N  L  S  N  Q  Q  C  I  S  S  Y  E  R  V  S  I  L  C  Y  S  N  K  Y  M  R  *  T  I  I  H  E  K  I  N  Y  E  F  H  M  N  G  L  Y  L  *  N  M  R  V  T  S  E  A  Y  Y  F :   I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </first_frame>
            <second_frame>  *  S  D  *  F  E  S  T  N  Q  K  F  *  E  C  D  I  A  R  V  G  G  A  D  K  V  *  K  Q  R  I  I  E  E  L  L  V  C  C  G  K  W  W  K  *  L  L  T  Q  L  L  L  G  L  S  Y  Q  K  Y  H  Y  S  R  L  Y  C  *  F  D  H  D  T  F  S  P  T  Q   : E  V  V  *  Y  G  S  *  K  I  C  V  D  G  I  I  S  Q  W  L  Q  P  N  G  Q  S  *  K  S  K  C  H  W  L  Y  T  D  F  E  *  C  C  T  T  L  Q  H  *  L  E  D  F  G  *  F  P  N  S  S  N  A  *  F  H  N  S  H  C  Q  C  L  Q  N  H  Y  G  Y  L  T  K  S  Y  S  L  W :   F  *  *  Y  Q  E  S  M  L  *  C  C  K  N  R  R  R  W  N  R  N  F  M  Q  K  R  R  D  C  L  F  R  *  E  C  E  C  V  F  *  W  V  A  S  N  R  S  S  E  H  C  A  C  *  *  G  F  F  F  Q  S  H  R  *  S  L  P  Y  K  C  S  S  L  I  T  L  I  Y  Q  T  N  N  V  F  R  V  M  K  E  Y  P  Y  Y  V  I  Q  T  N  I  *  G  E  Q  L  Y  M  R  K  *  T  M  N  F  I  *  M  A  Y  I  Y  K  I  *  E  *  H  P  R  L  I  I   : L  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </second_frame>
            <third_frame>   E  V  I  S  L  N  Q  Q  I  R  N  F  E  N  V  T  L  P  E  L  E  E  Q  T  K  C  K  S  K  E  S  L  K  N  Y  L  F  V  V  G  S  G  G  N  D  Y  S  L  N  Y  F  L  G  L  A  T  K  N  I  T  I  Q  D  F  T  A  N  L  T  M  T  L  S  H  Q  L  K  :  R  L  Y  D  M  G  A  R  K  F  V  L  M  A  L  Y  P  N  G  C  S  P  M  A  R  A  R  N  P  N  A  T  G  C  I  Q  I  L  N  D  A  A  Q  L  F  N  T  N  L  R  T  L  V  D  S  P  T  L  Q  M  P  D  S  T  I  V  I  V  N  A  Y  K  I  I  M  D  I  L  Q  N  P  T  P  Y   : G  F  S  D  T  K  N  P  C  C  D  V  A  R  I  E  E  G  G  T  G  T  L  C  K  N  G  G  I  V  C  S  D  R  N  V  N  V  Y  F  D  G  L  H  P  T  E  A  V  N  I  V  L  A  N  K  A  F  S  S  N  L  I  D  E  V  Y  P  T  N  V  R  L  L  S  H  *  F  I  K  P  T  M  Y  F  E  L  *  K  S  I  H  I  M  L  F  K  Q  I  Y  E  V  N  N  Y  T  *  E  N  K  L  *  I  S  Y  E  W  L  I  S  I  K  Y  E  S  N  I  R  G  L  L  F  :  Y  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2338" stop="2568"/>
                    <exon start="3136" stop="3388"/>
                    <exon start="3509" stop="3738"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>711</number_coding_nucleotides>
                  <number_encoded_amino_acids>237</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVISLNQQIRNFENVTLPELEEQTKCKSKESLKNYLFVVGSGGNDYSLNYFLGLATKNITIQDFTANLTMTLSHQLKRLYDMGARKFVLMALYPNGCSPMARARNPNATGCIQILNDAAQLFNTNLRTLVDSPTLQMPDSTIVIVNAYKIIMDILQNPTPYGFSDTKNPCCDVARIEEGGTGTLCKNGGIVCSDRNVNVYFDGLHPTEAVNIVLANKAFSSNLIDEVYPTNVRLLSH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="28094" PGL_stop="19293"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28094" e_stop="27284"/>
            <exon e_start="24031" e_stop="23761"/>
            <exon e_start="23655" e_stop="23485"/>
            <exon e_start="22698" e_stop="22238"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.966" acc_prob="0.999" e_score="0.994"/>
          <exon-intron don_prob="0.970" acc_prob="0.971" e_score="0.964"/>
          <exon-intron don_prob="0.972" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="28094" e_stop="27284" e_length="811"/>
          </exon>
          <intron i_serial="1" don_prob="0.966" acc_prob="0.999">
            <gDNA_intron_boundary i_start="27283" i_stop="24032" i_length="3252"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="24031" e_stop="23761" e_length="271"/>
          </exon>
          <intron i_serial="2" don_prob="0.970" acc_prob="0.971">
            <gDNA_intron_boundary i_start="23760" i_stop="23656" i_length="105"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="23655" e_stop="23485" e_length="171"/>
          </exon>
          <intron i_serial="3" don_prob="0.972" acc_prob="1.000">
            <gDNA_intron_boundary i_start="23484" i_stop="22699" i_length="786"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22698" e_stop="22238" e_length="461"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28094" stop="27571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28094" stop="27664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27836" stop="27462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27834" stop="27483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27673" stop="27284"/>
              <exon start="24031" stop="23848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27673" stop="27513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27672" stop="27284"/>
              <exon start="24031" stop="23858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27516" stop="27284"/>
              <exon start="24031" stop="23781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23838" stop="23761"/>
              <exon start="23655" stop="23485"/>
              <exon start="22698" stop="22253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23801" stop="23761"/>
              <exon start="23655" stop="23485"/>
              <exon start="22698" stop="22238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23800" stop="23761"/>
              <exon start="23655" stop="23485"/>
              <exon start="22698" stop="22427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23512" stop="23485"/>
              <exon start="22698" stop="22253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395538" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAATCAATATTGCTTTGCATTTAAAGCCCCAAAAAATAAAAATAAATGTCAAGTTCCTAATTTAAATATTTCACCTTCTCAGTTGAAATCTCAGCTACCTACAGTCTTTTTGCTGCTCATTTTTTATTTTATTTATTTATATTATATTGGTTATCGAATTTAATTTCAACCCTTGAATTTTCTGTATTTTTGGTGGATCTTCTTGTTGGGGTTTCATTGATTCTGATCTTTATTTTTTTTTAAAATAAGAAATTGGTTGATTTCTTTGATTTCAAATATAGATTTTTTCTGTATTTTTTGGTGGATTTTCTGCGATTTGATTTGATTTGAATTTCTATTGATTTGGGGGTGATTATTTTTGGATTTTATTTGTGGGTTTTGATTCCGGTGATAGATAATTCAAGATTTTGCTTTGGGGGTTTGTTTCTTGGATTTTTTTTGGTGGGGTTTGATTGAATTTTGTTATATAAATTCAAATGAATGAAGAATAGGGTGTCACGTTCATCATCGTCACCAGCATCGTTGTTGTTGTCAATGGCTGCGCCAAGGAGTTTGGTAGTGGATACGGGGCGGTTGCTGACAAGGGATGAGGAAATGAACTTAGGTTTGACGCCGGGAGCTGAGGATTCACCGACTGGTAAAAGGTATAAGGAAGGGAAGTTCCCGTTGTCAAGATGGGAATTTGCGGCAGCTTTGGGTGTATTTGTGGTGTTTTCAGTAGGGTTATTTTCTATATACTTGACAATGCCAGCTGCTGAATATGGAAAACTCAAGTTGCCTCGTTCCCTTTCCGACCTCCGGATACTCAA : GGATAATATTGGAACATATGCCAAAGTTTATCCTGCGAAGTTCATTCTGGGTTACTGCTCAACATATATATTCATGCAGACATTTATGATTCCTGGGACAATATTCATGTCCCTACTTGCAGGAGCACTTTTTGGTGTTCTTAAAGGGCTTATCTTGGTTGTCTTTAATGCTACAGCTGGTGCATCATCCTGCTTTTTTCTGTCTAAATTAATTGGCAGACCTTTGGTTAGCTGGTTGTGGCCTGAAAAATTGAGATTCTTCCAGGCAGAG : ATAGCCAAGCGTCGGGATAAGTTGCTCAACTATATGTTGTTTCTGAGAATAACTCCAACATTGCCAAATCTTTTCATCAACTTGGCATCTCCAATAGTGGATATACCATTCCATATTTTCTTCTCGGCCACATTGGTTGGTCTCATTCCAGCCGCATATATTACAGTCAAG : GCTGGCCTAGCTCTTGGTGAGCTGAAGTCTGTTAAAGATCTATACGATCTGAAGACCTTGTCCGTGCTCTTCCTCATTGGTTTTATCTCGATATTACCTACCATCTTGAAGAGGAAGAAAATATACGAATAAAGCTCCCCCCAGAAGGCCAATTCGGATCCTCTTGGAAAGTAACTTATAGAAGATATAGTTTAATTTTATTGTCGGAGCAAATTGGAGAGGCAGAGGCAAGACATAGCAAGATAGATCTAATTTGAAATCTACATTTGACTGTCCAATCCACTGGTAGAATAGTGGAAAACGTTGTGTTCTTTACCAACTCCTTATGTTTTACCCTCTGTTAGTCTGTTTCTGACCCGAACTTACCTGTAGTATTGTTTAAGGTAATGTCAAATGTAGCAGACAGATTTTGATATGAATTCTGATTCAAGATTGATCTTATAGTCATTTCACTGTTCAGT</gDNA_template>
            <first_frame> *  N  Q  Y  C  F  A  F  K  A  P  K  N  K  N  K  C  Q  V  P  N  L  N  I  S  P  S  Q  L  K  S  Q  L  P  T  V  F  L  L  L  I  F  Y  F  I  Y  L  Y  Y  I  G  Y  R  I  *  F  Q  P  L  N  F  L  Y  F  W  W  I  F  L  L  G  F  H  *  F  *  S  L  F  F  F  K  I  R  N  W  L  I  S  L  I  S  N  I  D  F  F  C  I  F  W  W  I  F  C  D  L  I  *  F  E  F  L  L  I  W  G  *  L  F  L  D  F  I  C  G  F  *  F  R  *  *  I  I  Q  D  F  A  L  G  V  C  F  L  D  F  F  W  W  G  L  I  E  F  C  Y  I  N  S  N  E  *  R  I  G  C  H  V  H  H  R  H  Q  H  R  C  C  C  Q  W  L  R  Q  G  V  W  *  W  I  R  G  G  C  *  Q  G  M  R  K  *  T  *  V  *  R  R  E  L  R  I  H  R  L  V  K  G  I  R  K  G  S  S  R  C  Q  D  G  N  L  R  Q  L  W  V  Y  L  W  C  F  Q  *  G  Y  F  L  Y  T  *  Q  C  Q  L  L  N  M  E  N  S  S  C  L  V  P  F  P  T  S  G  Y  S   : R  I  I  L  E  H  M  P  K  F  I  L  R  S  S  F  W  V  T  A  Q  H  I  Y  S  C  R  H  L  *  F  L  G  Q  Y  S  C  P  Y  L  Q  E  H  F  L  V  F  L  K  G  L  S  W  L  S  L  M  L  Q  L  V  H  H  P  A  F  F  C  L  N  *  L  A  D  L  W  L  A  G  C  G  L  K  N  *  D  S  S  R  Q  R :   *  P  S  V  G  I  S  C  S  T  I  C  C  F  *  E  *  L  Q  H  C  Q  I  F  S  S  T  W  H  L  Q  *  W  I  Y  H  S  I  F  S  S  R  P  H  W  L  V  S  F  Q  P  H  I  L  Q  S  R :   L  A  *  L  L  V  S  *  S  L  L  K  I  Y  T  I  *  R  P  C  P  C  S  S  S  L  V  L  S  R  Y  Y  L  P  S  *  R  G  R  K  Y  T  N  K  A  P  P  R  R  P  I  R  I  L  L  E  S  N  L  *  K  I  *  F  N  F  I  V  G  A  N  W  R  G  R  G  K  T  *  Q  D  R  S  N  L  K  S  T  F  D  C  P  I  H  W  *  N  S  G  K  R  C  V  L  Y  Q  L  L  M  F  Y  P  L  L  V  C  F  *  P  E  L  T  C  S  I  V  *  G  N  V  K  C  S  R  Q  I  L  I  *  I  L  I  Q  D  *  S  Y  S  H  F  T  V  Q  </first_frame>
            <second_frame>  K  I  N  I  A  L  H  L  K  P  Q  K  I  K  I  N  V  K  F  L  I  *  I  F  H  L  L  S  *  N  L  S  Y  L  Q  S  F  C  C  S  F  F  I  L  F  I  Y  I  I  L  V  I  E  F  N  F  N  P  *  I  F  C  I  F  G  G  S  S  C  W  G  F  I  D  S  D  L  Y  F  F  L  K  *  E  I  G  *  F  L  *  F  Q  I  *  I  F  S  V  F  F  G  G  F  S  A  I  *  F  D  L  N  F  Y  *  F  G  G  D  Y  F  W  I  L  F  V  G  F  D  S  G  D  R  *  F  K  I  L  L  W  G  F  V  S  W  I  F  F  G  G  V  *  L  N  F  V  I  *  I  Q  M  N  E  E  *  G  V  T  F  I  I  V  T  S  I  V  V  V  V  N  G  C  A  K  E  F  G  S  G  Y  G  A  V  A  D  K  G  *  G  N  E  L  R  F  D  A  G  S  *  G  F  T  D  W  *  K  V  *  G  R  E  V  P  V  V  K  M  G  I  C  G  S  F  G  C  I  C  G  V  F  S  R  V  I  F  Y  I  L  D  N  A  S  C  *  I  W  K  T  Q  V  A  S  F  P  F  R  P  P  D  T  Q  :  G  *  Y  W  N  I  C  Q  S  L  S  C  E  V  H  S  G  L  L  L  N  I  Y  I  H  A  D  I  Y  D  S  W  D  N  I  H  V  P  T  C  R  S  T  F  W  C  S  *  R  A  Y  L  G  C  L  *  C  Y  S  W  C  I  I  L  L  F  S  V  *  I  N  W  Q  T  F  G  *  L  V  V  A  *  K  I  E  I  L  P  G  R   : D  S  Q  A  S  G  *  V  A  Q  L  Y  V  V  S  E  N  N  S  N  I  A  K  S  F  H  Q  L  G  I  S  N  S  G  Y  T  I  P  Y  F  L  L  G  H  I  G  W  S  H  S  S  R  I  Y  Y  S  Q   : G  W  P  S  S  W  *  A  E  V  C  *  R  S  I  R  S  E  D  L  V  R  A  L  P  H  W  F  Y  L  D  I  T  Y  H  L  E  E  E  E  N  I  R  I  K  L  P  P  E  G  Q  F  G  S  S  W  K  V  T  Y  R  R  Y  S  L  I  L  L  S  E  Q  I  G  E  A  E  A  R  H  S  K  I  D  L  I  *  N  L  H  L  T  V  Q  S  T  G  R  I  V  E  N  V  V  F  F  T  N  S  L  C  F  T  L  C  *  S  V  S  D  P  N  L  P  V  V  L  F  K  V  M  S  N  V  A  D  R  F  *  Y  E  F  *  F  K  I  D  L  I  V  I  S  L  F  S </second_frame>
            <third_frame>   K  S  I  L  L  C  I  *  S  P  K  K  *  K  *  M  S  S  S  *  F  K  Y  F  T  F  S  V  E  I  S  A  T  Y  S  L  F  A  A  H  F  L  F  Y  L  F  I  L  Y  W  L  S  N  L  I  S  T  L  E  F  S  V  F  L  V  D  L  L  V  G  V  S  L  I  L  I  F  I  F  F  *  N  K  K  L  V  D  F  F  D  F  K  Y  R  F  F  L  Y  F  L  V  D  F  L  R  F  D  L  I  *  I  S  I  D  L  G  V  I  I  F  G  F  Y  L  W  V  L  I  P  V  I  D  N  S  R  F  C  F  G  G  L  F  L  G  F  F  L  V  G  F  D  *  I  L  L  Y  K  F  K  *  M  K  N  R  V  S  R  S  S  S  S  P  A  S  L  L  L  S  M  A  A  P  R  S  L  V  V  D  T  G  R  L  L  T  R  D  E  E  M  N  L  G  L  T  P  G  A  E  D  S  P  T  G  K  R  Y  K  E  G  K  F  P  L  S  R  W  E  F  A  A  A  L  G  V  F  V  V  F  S  V  G  L  F  S  I  Y  L  T  M  P  A  A  E  Y  G  K  L  K  L  P  R  S  L  S  D  L  R  I  L  K :   D  N  I  G  T  Y  A  K  V  Y  P  A  K  F  I  L  G  Y  C  S  T  Y  I  F  M  Q  T  F  M  I  P  G  T  I  F  M  S  L  L  A  G  A  L  F  G  V  L  K  G  L  I  L  V  V  F  N  A  T  A  G  A  S  S  C  F  F  L  S  K  L  I  G  R  P  L  V  S  W  L  W  P  E  K  L  R  F  F  Q  A  E  :  I  A  K  R  R  D  K  L  L  N  Y  M  L  F  L  R  I  T  P  T  L  P  N  L  F  I  N  L  A  S  P  I  V  D  I  P  F  H  I  F  F  S  A  T  L  V  G  L  I  P  A  A  Y  I  T  V  K  :  A  G  L  A  L  G  E  L  K  S  V  K  D  L  Y  D  L  K  T  L  S  V  L  F  L  I  G  F  I  S  I  L  P  T  I  L  K  R  K  K  I  Y  E  *  S  S  P  Q  K  A  N  S  D  P  L  G  K  *  L  I  E  D  I  V  *  F  Y  C  R  S  K  L  E  R  Q  R  Q  D  I  A  R  *  I  *  F  E  I  Y  I  *  L  S  N  P  L  V  E  *  W  K  T  L  C  S  L  P  T  P  Y  V  L  P  S  V  S  L  F  L  T  R  T  Y  L  *  Y  C  L  R  *  C  Q  M  *  Q  T  D  F  D  M  N  S  D  S  R  L  I  L  *  S  F  H  C  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27612" stop="27284"/>
                    <exon start="24031" stop="23761"/>
                    <exon start="23655" stop="23485"/>
                    <exon start="22698" stop="22567"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>900</number_coding_nucleotides>
                  <number_encoded_amino_acids>300</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MKNRVSRSSSSPASLLLSMAAPRSLVVDTGRLLTRDEEMNLGLTPGAEDSPTGKRYKEGKFPLSRWEFAAALGVFVVFSVGLFSIYLTMPAAEYGKLKLPRSLSDLRILKDNIGTYAKVYPAKFILGYCSTYIFMQTFMIPGTIFMSLLAGALFGVLKGLILVVFNATAGASSCFFLSKLIGRPLVSWLWPEKLRFFQAEIAKRRDKLLNYMLFLRITPTLPNLFINLASPIVDIPFHIFFSATLVGLIPAAYITVKAGLALGELKSVKDLYDLKTLSVLFLIGFISILPTILKRKKIYE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="28094" e_stop="27284"/>
            <exon e_start="24031" e_stop="23761"/>
            <exon e_start="23655" e_stop="23485"/>
            <exon e_start="22698" e_stop="22240"/>
            <exon e_start="21081" e_stop="21073"/>
            <exon e_start="19379" e_stop="19293"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.966" acc_prob="0.999" e_score="0.994"/>
          <exon-intron don_prob="0.970" acc_prob="0.971" e_score="0.964"/>
          <exon-intron don_prob="0.972" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.521" e_score="1.000"/>
          <exon-intron don_prob="0.074" acc_prob="0.000" e_score="0.667"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="28094" e_stop="27284" e_length="811"/>
          </exon>
          <intron i_serial="1" don_prob="0.966" acc_prob="0.999">
            <gDNA_intron_boundary i_start="27283" i_stop="24032" i_length="3252"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="24031" e_stop="23761" e_length="271"/>
          </exon>
          <intron i_serial="2" don_prob="0.970" acc_prob="0.971">
            <gDNA_intron_boundary i_start="23760" i_stop="23656" i_length="105"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="23655" e_stop="23485" e_length="171"/>
          </exon>
          <intron i_serial="3" don_prob="0.972" acc_prob="1.000">
            <gDNA_intron_boundary i_start="23484" i_stop="22699" i_length="786"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22698" e_stop="22240" e_length="459"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.521">
            <gDNA_intron_boundary i_start="22239" i_stop="21082" i_length="1158"/>
          </intron>
          <exon e_serial="5" e_score="0.667">
            <gDNA_exon_boundary e_start="21081" e_stop="21073" e_length="9"/>
          </exon>
          <intron i_serial="5" don_prob="0.074" acc_prob="0.000">
            <gDNA_intron_boundary i_start="21072" i_stop="19380" i_length="1693"/>
          </intron>
          <exon e_serial="6" e_score="0.667">
            <gDNA_exon_boundary e_start="19379" e_stop="19293" e_length="87"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28094" stop="27571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28094" stop="27664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27836" stop="27462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27834" stop="27483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27673" stop="27284"/>
              <exon start="24031" stop="23848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27673" stop="27513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27672" stop="27284"/>
              <exon start="24031" stop="23858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27516" stop="27284"/>
              <exon start="24031" stop="23781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23838" stop="23761"/>
              <exon start="23655" stop="23485"/>
              <exon start="22698" stop="22253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23800" stop="23761"/>
              <exon start="23655" stop="23485"/>
              <exon start="22698" stop="22427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23512" stop="23485"/>
              <exon start="22698" stop="22253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22636" stop="22240"/>
              <exon start="21081" stop="21073"/>
              <exon start="19379" stop="19293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539776" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAATCAATATTGCTTTGCATTTAAAGCCCCAAAAAATAAAAATAAATGTCAAGTTCCTAATTTAAATATTTCACCTTCTCAGTTGAAATCTCAGCTACCTACAGTCTTTTTGCTGCTCATTTTTTATTTTATTTATTTATATTATATTGGTTATCGAATTTAATTTCAACCCTTGAATTTTCTGTATTTTTGGTGGATCTTCTTGTTGGGGTTTCATTGATTCTGATCTTTATTTTTTTTTAAAATAAGAAATTGGTTGATTTCTTTGATTTCAAATATAGATTTTTTCTGTATTTTTTGGTGGATTTTCTGCGATTTGATTTGATTTGAATTTCTATTGATTTGGGGGTGATTATTTTTGGATTTTATTTGTGGGTTTTGATTCCGGTGATAGATAATTCAAGATTTTGCTTTGGGGGTTTGTTTCTTGGATTTTTTTTGGTGGGGTTTGATTGAATTTTGTTATATAAATTCAAATGAATGAAGAATAGGGTGTCACGTTCATCATCGTCACCAGCATCGTTGTTGTTGTCAATGGCTGCGCCAAGGAGTTTGGTAGTGGATACGGGGCGGTTGCTGACAAGGGATGAGGAAATGAACTTAGGTTTGACGCCGGGAGCTGAGGATTCACCGACTGGTAAAAGGTATAAGGAAGGGAAGTTCCCGTTGTCAAGATGGGAATTTGCGGCAGCTTTGGGTGTATTTGTGGTGTTTTCAGTAGGGTTATTTTCTATATACTTGACAATGCCAGCTGCTGAATATGGAAAACTCAAGTTGCCTCGTTCCCTTTCCGACCTCCGGATACTCAA : GGATAATATTGGAACATATGCCAAAGTTTATCCTGCGAAGTTCATTCTGGGTTACTGCTCAACATATATATTCATGCAGACATTTATGATTCCTGGGACAATATTCATGTCCCTACTTGCAGGAGCACTTTTTGGTGTTCTTAAAGGGCTTATCTTGGTTGTCTTTAATGCTACAGCTGGTGCATCATCCTGCTTTTTTCTGTCTAAATTAATTGGCAGACCTTTGGTTAGCTGGTTGTGGCCTGAAAAATTGAGATTCTTCCAGGCAGAG : ATAGCCAAGCGTCGGGATAAGTTGCTCAACTATATGTTGTTTCTGAGAATAACTCCAACATTGCCAAATCTTTTCATCAACTTGGCATCTCCAATAGTGGATATACCATTCCATATTTTCTTCTCGGCCACATTGGTTGGTCTCATTCCAGCCGCATATATTACAGTCAAG : GCTGGCCTAGCTCTTGGTGAGCTGAAGTCTGTTAAAGATCTATACGATCTGAAGACCTTGTCCGTGCTCTTCCTCATTGGTTTTATCTCGATATTACCTACCATCTTGAAGAGGAAGAAAATATACGAATAAAGCTCCCCCCAGAAGGCCAATTCGGATCCTCTTGGAAAGTAACTTATAGAAGATATAGTTTAATTTTATTGTCGGAGCAAATTGGAGAGGCAGAGGCAAGACATAGCAAGATAGATCTAATTTGAAATCTACATTTGACTGTCCAATCCACTGGTAGAATAGTGGAAAACGTTGTGTTCTTTACCAACTCCTTATGTTTTACCCTCTGTTAGTCTGTTTCTGACCCGAACTTACCTGTAGTATTGTTTAAGGTAATGTCAAATGTAGCAGACAGATTTTGATATGAATTCTGATTCAAGATTGATCTTATAGTCATTTCACTGTTCA : AAGCAACAA : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAATA</gDNA_template>
            <first_frame> *  N  Q  Y  C  F  A  F  K  A  P  K  N  K  N  K  C  Q  V  P  N  L  N  I  S  P  S  Q  L  K  S  Q  L  P  T  V  F  L  L  L  I  F  Y  F  I  Y  L  Y  Y  I  G  Y  R  I  *  F  Q  P  L  N  F  L  Y  F  W  W  I  F  L  L  G  F  H  *  F  *  S  L  F  F  F  K  I  R  N  W  L  I  S  L  I  S  N  I  D  F  F  C  I  F  W  W  I  F  C  D  L  I  *  F  E  F  L  L  I  W  G  *  L  F  L  D  F  I  C  G  F  *  F  R  *  *  I  I  Q  D  F  A  L  G  V  C  F  L  D  F  F  W  W  G  L  I  E  F  C  Y  I  N  S  N  E  *  R  I  G  C  H  V  H  H  R  H  Q  H  R  C  C  C  Q  W  L  R  Q  G  V  W  *  W  I  R  G  G  C  *  Q  G  M  R  K  *  T  *  V  *  R  R  E  L  R  I  H  R  L  V  K  G  I  R  K  G  S  S  R  C  Q  D  G  N  L  R  Q  L  W  V  Y  L  W  C  F  Q  *  G  Y  F  L  Y  T  *  Q  C  Q  L  L  N  M  E  N  S  S  C  L  V  P  F  P  T  S  G  Y  S   : R  I  I  L  E  H  M  P  K  F  I  L  R  S  S  F  W  V  T  A  Q  H  I  Y  S  C  R  H  L  *  F  L  G  Q  Y  S  C  P  Y  L  Q  E  H  F  L  V  F  L  K  G  L  S  W  L  S  L  M  L  Q  L  V  H  H  P  A  F  F  C  L  N  *  L  A  D  L  W  L  A  G  C  G  L  K  N  *  D  S  S  R  Q  R :   *  P  S  V  G  I  S  C  S  T  I  C  C  F  *  E  *  L  Q  H  C  Q  I  F  S  S  T  W  H  L  Q  *  W  I  Y  H  S  I  F  S  S  R  P  H  W  L  V  S  F  Q  P  H  I  L  Q  S  R :   L  A  *  L  L  V  S  *  S  L  L  K  I  Y  T  I  *  R  P  C  P  C  S  S  S  L  V  L  S  R  Y  Y  L  P  S  *  R  G  R  K  Y  T  N  K  A  P  P  R  R  P  I  R  I  L  L  E  S  N  L  *  K  I  *  F  N  F  I  V  G  A  N  W  R  G  R  G  K  T  *  Q  D  R  S  N  L  K  S  T  F  D  C  P  I  H  W  *  N  S  G  K  R  C  V  L  Y  Q  L  L  M  F  Y  P  L  L  V  C  F  *  P  E  L  T  C  S  I  V  *  G  N  V  K  C  S  R  Q  I  L  I  *  I  L  I  Q  D  *  S  Y  S  H  F  T  V  Q :   S  N  N :   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  K   </first_frame>
            <second_frame>  K  I  N  I  A  L  H  L  K  P  Q  K  I  K  I  N  V  K  F  L  I  *  I  F  H  L  L  S  *  N  L  S  Y  L  Q  S  F  C  C  S  F  F  I  L  F  I  Y  I  I  L  V  I  E  F  N  F  N  P  *  I  F  C  I  F  G  G  S  S  C  W  G  F  I  D  S  D  L  Y  F  F  L  K  *  E  I  G  *  F  L  *  F  Q  I  *  I  F  S  V  F  F  G  G  F  S  A  I  *  F  D  L  N  F  Y  *  F  G  G  D  Y  F  W  I  L  F  V  G  F  D  S  G  D  R  *  F  K  I  L  L  W  G  F  V  S  W  I  F  F  G  G  V  *  L  N  F  V  I  *  I  Q  M  N  E  E  *  G  V  T  F  I  I  V  T  S  I  V  V  V  V  N  G  C  A  K  E  F  G  S  G  Y  G  A  V  A  D  K  G  *  G  N  E  L  R  F  D  A  G  S  *  G  F  T  D  W  *  K  V  *  G  R  E  V  P  V  V  K  M  G  I  C  G  S  F  G  C  I  C  G  V  F  S  R  V  I  F  Y  I  L  D  N  A  S  C  *  I  W  K  T  Q  V  A  S  F  P  F  R  P  P  D  T  Q  :  G  *  Y  W  N  I  C  Q  S  L  S  C  E  V  H  S  G  L  L  L  N  I  Y  I  H  A  D  I  Y  D  S  W  D  N  I  H  V  P  T  C  R  S  T  F  W  C  S  *  R  A  Y  L  G  C  L  *  C  Y  S  W  C  I  I  L  L  F  S  V  *  I  N  W  Q  T  F  G  *  L  V  V  A  *  K  I  E  I  L  P  G  R   : D  S  Q  A  S  G  *  V  A  Q  L  Y  V  V  S  E  N  N  S  N  I  A  K  S  F  H  Q  L  G  I  S  N  S  G  Y  T  I  P  Y  F  L  L  G  H  I  G  W  S  H  S  S  R  I  Y  Y  S  Q   : G  W  P  S  S  W  *  A  E  V  C  *  R  S  I  R  S  E  D  L  V  R  A  L  P  H  W  F  Y  L  D  I  T  Y  H  L  E  E  E  E  N  I  R  I  K  L  P  P  E  G  Q  F  G  S  S  W  K  V  T  Y  R  R  Y  S  L  I  L  L  S  E  Q  I  G  E  A  E  A  R  H  S  K  I  D  L  I  *  N  L  H  L  T  V  Q  S  T  G  R  I  V  E  N  V  V  F  F  T  N  S  L  C  F  T  L  C  *  S  V  S  D  P  N  L  P  V  V  L  F  K  V  M  S  N  V  A  D  R  F  *  Y  E  F  *  F  K  I  D  L  I  V  I  S  L  F   : K  A  T   : I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  S  N  </second_frame>
            <third_frame>   K  S  I  L  L  C  I  *  S  P  K  K  *  K  *  M  S  S  S  *  F  K  Y  F  T  F  S  V  E  I  S  A  T  Y  S  L  F  A  A  H  F  L  F  Y  L  F  I  L  Y  W  L  S  N  L  I  S  T  L  E  F  S  V  F  L  V  D  L  L  V  G  V  S  L  I  L  I  F  I  F  F  *  N  K  K  L  V  D  F  F  D  F  K  Y  R  F  F  L  Y  F  L  V  D  F  L  R  F  D  L  I  *  I  S  I  D  L  G  V  I  I  F  G  F  Y  L  W  V  L  I  P  V  I  D  N  S  R  F  C  F  G  G  L  F  L  G  F  F  L  V  G  F  D  *  I  L  L  Y  K  F  K  *  M  K  N  R  V  S  R  S  S  S  S  P  A  S  L  L  L  S  M  A  A  P  R  S  L  V  V  D  T  G  R  L  L  T  R  D  E  E  M  N  L  G  L  T  P  G  A  E  D  S  P  T  G  K  R  Y  K  E  G  K  F  P  L  S  R  W  E  F  A  A  A  L  G  V  F  V  V  F  S  V  G  L  F  S  I  Y  L  T  M  P  A  A  E  Y  G  K  L  K  L  P  R  S  L  S  D  L  R  I  L  K :   D  N  I  G  T  Y  A  K  V  Y  P  A  K  F  I  L  G  Y  C  S  T  Y  I  F  M  Q  T  F  M  I  P  G  T  I  F  M  S  L  L  A  G  A  L  F  G  V  L  K  G  L  I  L  V  V  F  N  A  T  A  G  A  S  S  C  F  F  L  S  K  L  I  G  R  P  L  V  S  W  L  W  P  E  K  L  R  F  F  Q  A  E  :  I  A  K  R  R  D  K  L  L  N  Y  M  L  F  L  R  I  T  P  T  L  P  N  L  F  I  N  L  A  S  P  I  V  D  I  P  F  H  I  F  F  S  A  T  L  V  G  L  I  P  A  A  Y  I  T  V  K  :  A  G  L  A  L  G  E  L  K  S  V  K  D  L  Y  D  L  K  T  L  S  V  L  F  L  I  G  F  I  S  I  L  P  T  I  L  K  R  K  K  I  Y  E  *  S  S  P  Q  K  A  N  S  D  P  L  G  K  *  L  I  E  D  I  V  *  F  Y  C  R  S  K  L  E  R  Q  R  Q  D  I  A  R  *  I  *  F  E  I  Y  I  *  L  S  N  P  L  V  E  *  W  K  T  L  C  S  L  P  T  P  Y  V  L  P  S  V  S  L  F  L  T  R  T  Y  L  *  Y  C  L  R  *  C  Q  M  *  Q  T  D  F  D  M  N  S  D  S  R  L  I  L  *  S  F  H  C  S  :  K  Q  Q  :  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  Q  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27612" stop="27284"/>
                    <exon start="24031" stop="23761"/>
                    <exon start="23655" stop="23485"/>
                    <exon start="22698" stop="22567"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>900</number_coding_nucleotides>
                  <number_encoded_amino_acids>300</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MKNRVSRSSSSPASLLLSMAAPRSLVVDTGRLLTRDEEMNLGLTPGAEDSPTGKRYKEGKFPLSRWEFAAALGVFVVFSVGLFSIYLTMPAAEYGKLKLPRSLSDLRILKDNIGTYAKVYPAKFILGYCSTYIFMQTFMIPGTIFMSLLAGALFGVLKGLILVVFNATAGASSCFFLSKLIGRPLVSWLWPEKLRFFQAEIAKRRDKLLNYMLFLRITPTLPNLFINLASPIVDIPFHIFFSATLVGLIPAAYITVKAGLALGELKSVKDLYDLKTLSVLFLIGFISILPTILKRKKIYE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="20669" PGL_stop="22166"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21108" e_stop="21189"/>
            <exon e_start="21282" e_stop="21356"/>
            <exon e_start="21627" e_stop="21965"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.946" acc_prob="0.939" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="21108" e_stop="21189" e_length="82"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.978">
            <gDNA_intron_boundary i_start="21190" i_stop="21281" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21282" e_stop="21356" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.946" acc_prob="0.939">
            <gDNA_intron_boundary i_start="21357" i_stop="21626" i_length="270"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="21627" e_stop="21965" e_length="339"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21108" stop="21189"/>
              <exon start="21282" stop="21356"/>
              <exon start="21627" stop="21952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21142" stop="21189"/>
              <exon start="21282" stop="21356"/>
              <exon start="21627" stop="21952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21149" stop="21189"/>
              <exon start="21282" stop="21356"/>
              <exon start="21627" stop="21959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21156" stop="21189"/>
              <exon start="21282" stop="21356"/>
              <exon start="21627" stop="21959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21296" stop="21356"/>
              <exon start="21627" stop="21952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21722" stop="21965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21728" stop="21965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392633" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAG : TTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAG : CCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAAATTACGTCCAAATTGCTGTTTTCTCAACATCTGCTTAATAGTGCCTTTCAGGATTATGTAGTTTTGTATAGACCGAGAAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACCTCATGTTTTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGTTGAGCAATGTACTTGAGTTTTGAATATTGAAGAAACCTCTTTTTGACTGAACAGCAGTTATTCTTT</gDNA_template>
            <first_frame> T  C  G  N  K  N  K  Y  L  G  W  K  T  S  G  A  K  C  N  S  P  R  C  C  *  R  A   : V  E  R  *  E  G  Y  R  L  Q  V  *  E  E  K  E  L  Q  K  E  Y  W  S  Q  T   : A  N  Y  S  D  K  N  N  G  H  Y  W  L  S  R  F  T  S  S  H  P  C  R  P  R  S  S  Q  V  T  F  R  L  K  I  T  S  K  L  L  F  S  Q  H  L  L  N  S  A  F  Q  D  Y  V  V  L  Y  R  P  R  K  Q  *  Q  K  *  V  L  E  G  A  F  N  L  M  F  C  C  N  F  H  P  F  C  F  F  A  C  I  I  W  L  S  N  V  L  E  F  *  I  L  K  K  P  L  F  D  *  T  A  V  I  L  </first_frame>
            <second_frame>  L  V  G  T  K  T  S  T  W  V  G  K  P  V  V  P  N  A  T  V  H  A  V  V  E  E  Q  :  L  K  D  K  K  V  I  V  F  K  Y  K  K  K  K  N  Y  R  R  N  I  G  H  R  Q  :  P  I  T  R  I  R  I  M  G  I  T  G  Y  Q  D  S  P  A  V  T  L  A  D  L  E  A  A  K  *  L  L  G  S  K  L  R  P  N  C  C  F  L  N  I  C  L  I  V  P  F  R  I  M  *  F  C  I  D  R  E  S  N  D  R  N  E  F  W  K  A  H  L  T  S  C  F  V  V  I  S  I  H  F  V  S  L  H  V  L  F  G  *  A  M  Y  L  S  F  E  Y  *  R  N  L  F  L  T  E  Q  Q  L  F  F </second_frame>
            <third_frame>   L  W  E  Q  K  Q  V  L  G  L  E  N  Q  W  C  Q  M  Q  Q  S  T  L  L  L  K  S  S :   *  K  I  R  R  L  S  S  S  S  I  R  R  K  R  T  T  E  G  I  L  V  T  D  S :   Q  L  L  G  *  E  *  W  A  L  L  V  I  K  I  H  Q  Q  S  P  L  Q  T  *  K  Q  P  S  D  F  *  A  Q  N  Y  V  Q  I  A  V  F  S  T  S  A  *  *  C  L  S  G  L  C  S  F  V  *  T  E  K  A  M  T  E  M  S  F  G  R  R  I  *  P  H  V  L  L  *  F  P  S  I  L  F  L  C  M  Y  Y  L  V  E  Q  C  T  *  V  L  N  I  E  E  T  S  F  *  L  N  S  S  Y  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21109" stop="21189"/>
                    <exon start="21282" stop="21356"/>
                    <exon start="21627" stop="21713"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVGTKTSTWVGKPVVPNATVHAVVEEQLKDKKVIVFKYKKKKNYRRNIGHRQPITRIRIMGITGYQDSPAVTLADLEAAK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21317" stop="21356"/>
                    <exon start="21627" stop="21814"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EEKELQKEYWSQTANYSDKNNGHYWLSRFTSSHPCRPRSSQVTFRLKITSKLLFSQHLLNSAFQDYVVLYRPRKQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="21281" e_stop="21356"/>
            <exon e_start="21627" e_stop="21965"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.946" acc_prob="0.939" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="21281" e_stop="21356" e_length="76"/>
          </exon>
          <intron i_serial="1" don_prob="0.946" acc_prob="0.939">
            <gDNA_intron_boundary i_start="21357" i_stop="21626" i_length="270"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="21627" e_stop="21965" e_length="339"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21281" stop="21356"/>
              <exon start="21627" stop="21924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615769" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21296" stop="21356"/>
              <exon start="21627" stop="21952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21722" stop="21965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21728" stop="21965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392633" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAG : CCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAAATTACGTCCAAATTGCTGTTTTCTCAACATCTGCTTAATAGTGCCTTTCAGGATTATGTAGTTTTGTATAGACCGAGAAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACCTCATGTTTTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGTTGAGCAATGTACTTGAGTTTTGAATATTGAAGAAACCTCTTTTTGACTGAACAGCAGTTATTCTTT</gDNA_template>
            <first_frame> V  E  R  *  E  G  Y  R  L  Q  V  *  E  E  K  E  L  Q  K  E  Y  W  S  Q  T   : A  N  Y  S  D  K  N  N  G  H  Y  W  L  S  R  F  T  S  S  H  P  C  R  P  R  S  S  Q  V  T  F  R  L  K  I  T  S  K  L  L  F  S  Q  H  L  L  N  S  A  F  Q  D  Y  V  V  L  Y  R  P  R  K  Q  *  Q  K  *  V  L  E  G  A  F  N  L  M  F  C  C  N  F  H  P  F  C  F  F  A  C  I  I  W  L  S  N  V  L  E  F  *  I  L  K  K  P  L  F  D  *  T  A  V  I  L  </first_frame>
            <second_frame>  L  K  D  K  K  V  I  V  F  K  Y  K  K  K  K  N  Y  R  R  N  I  G  H  R  Q  :  P  I  T  R  I  R  I  M  G  I  T  G  Y  Q  D  S  P  A  V  T  L  A  D  L  E  A  A  K  *  L  L  G  S  K  L  R  P  N  C  C  F  L  N  I  C  L  I  V  P  F  R  I  M  *  F  C  I  D  R  E  S  N  D  R  N  E  F  W  K  A  H  L  T  S  C  F  V  V  I  S  I  H  F  V  S  L  H  V  L  F  G  *  A  M  Y  L  S  F  E  Y  *  R  N  L  F  L  T  E  Q  Q  L  F  F </second_frame>
            <third_frame>   *  K  I  R  R  L  S  S  S  S  I  R  R  K  R  T  T  E  G  I  L  V  T  D  S :   Q  L  L  G  *  E  *  W  A  L  L  V  I  K  I  H  Q  Q  S  P  L  Q  T  *  K  Q  P  S  D  F  *  A  Q  N  Y  V  Q  I  A  V  F  S  T  S  A  *  *  C  L  S  G  L  C  S  F  V  *  T  E  K  A  M  T  E  M  S  F  G  R  R  I  *  P  H  V  L  L  *  F  P  S  I  L  F  L  C  M  Y  Y  L  V  E  Q  C  T  *  V  L  N  I  E  E  T  S  F  *  L  N  S  S  Y  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21317" stop="21356"/>
                    <exon start="21627" stop="21814"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EEKELQKEYWSQTANYSDKNNGHYWLSRFTSSHPCRPRSSQVTFRLKITSKLLFSQHLLNSAFQDYVVLYRPRKQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="21108" e_stop="21189"/>
            <exon e_start="21282" e_stop="21356"/>
            <exon e_start="21627" e_stop="21952"/>
            <exon e_start="22155" e_stop="22166"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.946" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.077" e_score="0.997"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="21108" e_stop="21189" e_length="82"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.978">
            <gDNA_intron_boundary i_start="21190" i_stop="21281" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21282" e_stop="21356" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.946" acc_prob="0.939">
            <gDNA_intron_boundary i_start="21357" i_stop="21626" i_length="270"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="21627" e_stop="21952" e_length="326"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.077">
            <gDNA_intron_boundary i_start="21953" i_stop="22154" i_length="202"/>
          </intron>
          <exon e_serial="4" e_score="0.750">
            <gDNA_exon_boundary e_start="22155" e_stop="22166" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21108" stop="21189"/>
              <exon start="21282" stop="21356"/>
              <exon start="21627" stop="21952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21119" stop="21189"/>
              <exon start="21282" stop="21356"/>
              <exon start="21627" stop="21952"/>
              <exon start="22155" stop="22166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21142" stop="21189"/>
              <exon start="21282" stop="21356"/>
              <exon start="21627" stop="21952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21296" stop="21356"/>
              <exon start="21627" stop="21952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235217" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAG : TTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAG : CCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAAATTACGTCCAAATTGCTGTTTTCTCAACATCTGCTTAATAGTGCCTTTCAGGATTATGTAGTTTTGTATAGACCGAGAAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACCTCATGTTTTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGTTGAGCAATGTACTTGAGTTTTGAATATTGAAGAAACCTCTTTTTGACTGAACA : AAAGTAAAAACA</gDNA_template>
            <first_frame> T  C  G  N  K  N  K  Y  L  G  W  K  T  S  G  A  K  C  N  S  P  R  C  C  *  R  A   : V  E  R  *  E  G  Y  R  L  Q  V  *  E  E  K  E  L  Q  K  E  Y  W  S  Q  T   : A  N  Y  S  D  K  N  N  G  H  Y  W  L  S  R  F  T  S  S  H  P  C  R  P  R  S  S  Q  V  T  F  R  L  K  I  T  S  K  L  L  F  S  Q  H  L  L  N  S  A  F  Q  D  Y  V  V  L  Y  R  P  R  K  Q  *  Q  K  *  V  L  E  G  A  F  N  L  M  F  C  C  N  F  H  P  F  C  F  F  A  C  I  I  W  L  S  N  V  L  E  F  *  I  L  K  K  P  L  F  D  *  T  :  K  V  K  T </first_frame>
            <second_frame>  L  V  G  T  K  T  S  T  W  V  G  K  P  V  V  P  N  A  T  V  H  A  V  V  E  E  Q  :  L  K  D  K  K  V  I  V  F  K  Y  K  K  K  K  N  Y  R  R  N  I  G  H  R  Q  :  P  I  T  R  I  R  I  M  G  I  T  G  Y  Q  D  S  P  A  V  T  L  A  D  L  E  A  A  K  *  L  L  G  S  K  L  R  P  N  C  C  F  L  N  I  C  L  I  V  P  F  R  I  M  *  F  C  I  D  R  E  S  N  D  R  N  E  F  W  K  A  H  L  T  S  C  F  V  V  I  S  I  H  F  V  S  L  H  V  L  F  G  *  A  M  Y  L  S  F  E  Y  *  R  N  L  F  L  T  E  Q :   K  *  K   </second_frame>
            <third_frame>   L  W  E  Q  K  Q  V  L  G  L  E  N  Q  W  C  Q  M  Q  Q  S  T  L  L  L  K  S  S :   *  K  I  R  R  L  S  S  S  S  I  R  R  K  R  T  T  E  G  I  L  V  T  D  S :   Q  L  L  G  *  E  *  W  A  L  L  V  I  K  I  H  Q  Q  S  P  L  Q  T  *  K  Q  P  S  D  F  *  A  Q  N  Y  V  Q  I  A  V  F  S  T  S  A  *  *  C  L  S  G  L  C  S  F  V  *  T  E  K  A  M  T  E  M  S  F  G  R  R  I  *  P  H  V  L  L  *  F  P  S  I  L  F  L  C  M  Y  Y  L  V  E  Q  C  T  *  V  L  N  I  E  E  T  S  F  *  L  N   : K  S  K  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21109" stop="21189"/>
                    <exon start="21282" stop="21356"/>
                    <exon start="21627" stop="21713"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVGTKTSTWVGKPVVPNATVHAVVEEQLKDKKVIVFKYKKKKNYRRNIGHRQPITRIRIMGITGYQDSPAVTLADLEAAK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21317" stop="21356"/>
                    <exon start="21627" stop="21814"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EEKELQKEYWSQTANYSDKNNGHYWLSRFTSSHPCRPRSSQVTFRLKITSKLLFSQHLLNSAFQDYVVLYRPRKQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="20669" e_stop="20697"/>
            <exon e_start="21088" e_stop="21189"/>
            <exon e_start="21282" e_stop="21356"/>
            <exon e_start="21627" e_stop="21934"/>
            <exon e_start="22155" e_stop="22164"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.927" acc_prob="0.731" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.978" e_score="0.980"/>
          <exon-intron don_prob="0.946" acc_prob="0.939" e_score="0.987"/>
          <exon-intron don_prob="0.000" acc_prob="0.077" e_score="0.987"/>
          <exon-only e_score="0.800"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20669" e_stop="20697" e_length="29"/>
          </exon>
          <intron i_serial="1" don_prob="0.927" acc_prob="0.731">
            <gDNA_intron_boundary i_start="20698" i_stop="21087" i_length="390"/>
          </intron>
          <exon e_serial="2" e_score="0.980">
            <gDNA_exon_boundary e_start="21088" e_stop="21189" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.978">
            <gDNA_intron_boundary i_start="21190" i_stop="21281" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="21282" e_stop="21356" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.946" acc_prob="0.939">
            <gDNA_intron_boundary i_start="21357" i_stop="21626" i_length="270"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="21627" e_stop="21934" e_length="308"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.077">
            <gDNA_intron_boundary i_start="21935" i_stop="22154" i_length="220"/>
          </intron>
          <exon e_serial="5" e_score="0.800">
            <gDNA_exon_boundary e_start="22155" e_stop="22164" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20669" stop="20697"/>
              <exon start="21088" stop="21189"/>
              <exon start="21282" stop="21356"/>
              <exon start="21627" stop="21934"/>
              <exon start="22155" stop="22164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370487" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCTTAAAGGTGCAAATGTCAATGACAAA : ATTATCCTAAACAAGGTGTTACTTGTGGGAACAAAAACAAGTACTTGGGTTGGAAAACCAGTGGTGCCAAATGCAACAGTCCACGCTGTTGTTGAAGAGCAG : TTGAAAGATAAGAAGGTTATCGTCTTCAAGTATAAGAAGAAAAAGAACTACAGAAGGAATATTGGTCACAGACAG : CCAATTACTCGGATAAGAATAATGGGCATTACTGGTTATCAAGATTCACCAGCAGTCACCCTTGCAGACCTAGAAGCAGCCAAGTGACTTTTAGGCTCAAAATTACGTCCAAATTGCTGTTTTCTCAACATCTGCTTAATAGTGCCTTTCAGGATTATGTAGTTTTGTATAGACCGAGAAAGCAATGACAGAAATGAGTTTTGGAAGGCGCATTTAACCTCATGTTTTGTTGTAATTTCCATCCATTTTGTTTCTTTGCATGTATTATTTGGTTGAGCAATGTACTTGAGTTTTGAATATTGAAGAAA : AAAGTAAAAA</gDNA_template>
            <first_frame> G  L  K  V  Q  M  S  M  T  K :   L  S  *  T  R  C  Y  L  W  E  Q  K  Q  V  L  G  L  E  N  Q  W  C  Q  M  Q  Q  S  T  L  L  L  K  S  S :   *  K  I  R  R  L  S  S  S  S  I  R  R  K  R  T  T  E  G  I  L  V  T  D  S :   Q  L  L  G  *  E  *  W  A  L  L  V  I  K  I  H  Q  Q  S  P  L  Q  T  *  K  Q  P  S  D  F  *  A  Q  N  Y  V  Q  I  A  V  F  S  T  S  A  *  *  C  L  S  G  L  C  S  F  V  *  T  E  K  A  M  T  E  M  S  F  G  R  R  I  *  P  H  V  L  L  *  F  P  S  I  L  F  L  C  M  Y  Y  L  V  E  Q  C  T  *  V  L  N  I  E  E   : K  S  K   </first_frame>
            <second_frame>  A  *  R  C  K  C  Q  *  Q   : N  Y  P  K  Q  G  V  T  C  G  N  K  N  K  Y  L  G  W  K  T  S  G  A  K  C  N  S  P  R  C  C  *  R  A   : V  E  R  *  E  G  Y  R  L  Q  V  *  E  E  K  E  L  Q  K  E  Y  W  S  Q  T   : A  N  Y  S  D  K  N  N  G  H  Y  W  L  S  R  F  T  S  S  H  P  C  R  P  R  S  S  Q  V  T  F  R  L  K  I  T  S  K  L  L  F  S  Q  H  L  L  N  S  A  F  Q  D  Y  V  V  L  Y  R  P  R  K  Q  *  Q  K  *  V  L  E  G  A  F  N  L  M  F  C  C  N  F  H  P  F  C  F  F  A  C  I  I  W  L  S  N  V  L  E  F  *  I  L  K  K  :  K  V  K  </second_frame>
            <third_frame>   L  K  G  A  N  V  N  D  K  :  I  I  L  N  K  V  L  L  V  G  T  K  T  S  T  W  V  G  K  P  V  V  P  N  A  T  V  H  A  V  V  E  E  Q  :  L  K  D  K  K  V  I  V  F  K  Y  K  K  K  K  N  Y  R  R  N  I  G  H  R  Q  :  P  I  T  R  I  R  I  M  G  I  T  G  Y  Q  D  S  P  A  V  T  L  A  D  L  E  A  A  K  *  L  L  G  S  K  L  R  P  N  C  C  F  L  N  I  C  L  I  V  P  F  R  I  M  *  F  C  I  D  R  E  S  N  D  R  N  E  F  W  K  A  H  L  T  S  C  F  V  V  I  S  I  H  F  V  S  L  H  V  L  F  G  *  A  M  Y  L  S  F  E  Y  *  R  K :   K  *  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20671" stop="20697"/>
                    <exon start="21088" stop="21189"/>
                    <exon start="21282" stop="21356"/>
                    <exon start="21627" stop="21713"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKGANVNDKIILNKVLLVGTKTSTWVGKPVVPNATVHAVVEEQLKDKKVIVFKYKKKKNYRRNIGHRQPITRIRIMGITGYQDSPAVTLADLEAAK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21317" stop="21356"/>
                    <exon start="21627" stop="21814"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EEKELQKEYWSQTANYSDKNNGHYWLSRFTSSHPCRPRSSQVTFRLKITSKLLFSQHLLNSAFQDYVVLYRPRKQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="32095" PGL_stop="29236"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32095" e_stop="31921"/>
            <exon e_start="31803" e_stop="31540"/>
            <exon e_start="31283" e_stop="30533"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.965" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32095" e_stop="31921" e_length="175"/>
          </exon>
          <intron i_serial="1" don_prob="0.965" acc_prob="0.999">
            <gDNA_intron_boundary i_start="31920" i_stop="31804" i_length="117"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31803" e_stop="31540" e_length="264"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.989">
            <gDNA_intron_boundary i_start="31539" i_stop="31284" i_length="256"/>
          </intron>
          <exon e_serial="3" e_score="0.983">
            <gDNA_exon_boundary e_start="31283" e_stop="30533" e_length="751"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32095" stop="31921"/>
              <exon start="31803" stop="31540"/>
              <exon start="31283" stop="31201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32051" stop="31921"/>
              <exon start="31803" stop="31540"/>
              <exon start="31283" stop="31177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31757" stop="31540"/>
              <exon start="31283" stop="31177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31229" stop="30533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31227" stop="30533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31227" stop="30533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31175" stop="30536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31174" stop="30537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30865" stop="30540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598086" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAAGTAACTCTTTGTTTGCCAAAACAGTTGATGATCGGTTTATCATCAAGGAAATTAAGAGAGCGGAATTTGACTCGTTCTTGAAGTTTGCTCCTAGTTATTTTGCATACATGGATCAGTGCCATGCTAAGAGGAATCAAACGTGCCTTGCAAAAATTCTTGGCATTTATCAG : GTCAATGTAAGGCCAAGAGGTGGAAAAGAGACTAGGCACGATCTCATGGTGATGGAGAACCTTTCATTTGGTAGAATTACTACTCGGCAGTATGATCTGAAAGGAGCTTTGCATGCTCGATTTAGTGCAGCTGGCAATGGTGCAGGAGACGTTCTTTTAGACCAAAACTTTGTGAATGACATGAATGTTTCTCCTTTATATGTCGGGACAAGATCAAAGAGGGCTTTGCAACGGGCTGTATGGAATGACTGTACTTTCCTCAAG : TCAATCAATGTGATGGACTATTCTCTACTTGTGGGAGTGGATAGCCAACGCCATGAACTTGTTTGTGGCATCATTGACTATCTCAGACAATATACATGGGACAAACAACTCGAGAATTGGGTCAAATCTTCACTAGTGGTTCCAAAGAATCAGCTTCCTACTATCGTATCTCCGAAAGAGTATTATAAGAGGTTTAGGAAGTTCATTGACACACATTTCTTAAGTGTTCCAGATAATTGGTGCTCCCAAAATTCTTCAAATCCTTGTCAACTTCTTCGCACGGTAAGCAGTATAACCCCACAGTCAGAGTCTGATGATGGTGATTCTGATCAACCAAAGTGCACTGGTGAAGGGGAACATAAAGATGCGTACTCTGATGCCTAATGGTTCGCGTCCCCTGAGTTCTGTTCCCTTTTAAGTAGTTCTCATCCCCGGTGAAGTCATTAGTTTGTGTACATAGTTGTTTGTCGCCCGAGCATCTAGATATATACCCCCTCTTATTTCTGCGATTATTTTTAGCAAAGTTATGAGGATGGCTTTATTCTTTAGGTTCATTTCTAGCTTACAGTATATACCAAAGTTCTTGTGAAGTCTTATGATTTATTGTAAAAAGCCCTTTAGTAAGCTTGAGTATTATTTAAGCTGTAAAGGGAAAAAAGATAGCAGTTGAATCTGCTGATGGTTGAAATTTTTGGCTGTAACAATATATTCCTATAAATCCATTGTTGAGTTTTTGGTTATTTGGTATATG</gDNA_template>
            <first_frame> Q  K  *  L  F  V  C  Q  N  S  *  *  S  V  Y  H  Q  G  N  *  E  S  G  I  *  L  V  L  E  V  C  S  *  L  F  C  I  H  G  S  V  P  C  *  E  E  S  N  V  P  C  K  N  S  W  H  L  S   : G  Q  C  K  A  K  R  W  K  R  D  *  A  R  S  H  G  D  G  E  P  F  I  W  *  N  Y  Y  S  A  V  *  S  E  R  S  F  A  C  S  I  *  C  S  W  Q  W  C  R  R  R  S  F  R  P  K  L  C  E  *  H  E  C  F  S  F  I  C  R  D  K  I  K  E  G  F  A  T  G  C  M  E  *  L  Y  F  P  Q   : V  N  Q  C  D  G  L  F  S  T  C  G  S  G  *  P  T  P  *  T  C  L  W  H  H  *  L  S  Q  T  I  Y  M  G  Q  T  T  R  E  L  G  Q  I  F  T  S  G  S  K  E  S  A  S  Y  Y  R  I  S  E  R  V  L  *  E  V  *  E  V  H  *  H  T  F  L  K  C  S  R  *  L  V  L  P  K  F  F  K  S  L  S  T  S  S  H  G  K  Q  Y  N  P  T  V  R  V  *  *  W  *  F  *  S  T  K  V  H  W  *  R  G  T  *  R  C  V  L  *  C  L  M  V  R  V  P  *  V  L  F  P  F  K  *  F  S  S  P  V  K  S  L  V  C  V  H  S  C  L  S  P  E  H  L  D  I  Y  P  L  L  F  L  R  L  F  L  A  K  L  *  G  W  L  Y  S  L  G  S  F  L  A  Y  S  I  Y  Q  S  S  C  E  V  L  *  F  I  V  K  S  P  L  V  S  L  S  I  I  *  A  V  K  G  K  K  I  A  V  E  S  A  D  G  *  N  F  W  L  *  Q  Y  I  P  I  N  P  L  L  S  F  W  L  F  G  I   </first_frame>
            <second_frame>  K  S  N  S  L  F  A  K  T  V  D  D  R  F  I  I  K  E  I  K  R  A  E  F  D  S  F  L  K  F  A  P  S  Y  F  A  Y  M  D  Q  C  H  A  K  R  N  Q  T  C  L  A  K  I  L  G  I  Y  Q  :  V  N  V  R  P  R  G  G  K  E  T  R  H  D  L  M  V  M  E  N  L  S  F  G  R  I  T  T  R  Q  Y  D  L  K  G  A  L  H  A  R  F  S  A  A  G  N  G  A  G  D  V  L  L  D  Q  N  F  V  N  D  M  N  V  S  P  L  Y  V  G  T  R  S  K  R  A  L  Q  R  A  V  W  N  D  C  T  F  L  K  :  S  I  N  V  M  D  Y  S  L  L  V  G  V  D  S  Q  R  H  E  L  V  C  G  I  I  D  Y  L  R  Q  Y  T  W  D  K  Q  L  E  N  W  V  K  S  S  L  V  V  P  K  N  Q  L  P  T  I  V  S  P  K  E  Y  Y  K  R  F  R  K  F  I  D  T  H  F  L  S  V  P  D  N  W  C  S  Q  N  S  S  N  P  C  Q  L  L  R  T  V  S  S  I  T  P  Q  S  E  S  D  D  G  D  S  D  Q  P  K  C  T  G  E  G  E  H  K  D  A  Y  S  D  A  *  W  F  A  S  P  E  F  C  S  L  L  S  S  S  H  P  R  *  S  H  *  F  V  Y  I  V  V  C  R  P  S  I  *  I  Y  T  P  S  Y  F  C  D  Y  F  *  Q  S  Y  E  D  G  F  I  L  *  V  H  F  *  L  T  V  Y  T  K  V  L  V  K  S  Y  D  L  L  *  K  A  L  *  *  A  *  V  L  F  K  L  *  R  E  K  R  *  Q  L  N  L  L  M  V  E  I  F  G  C  N  N  I  F  L  *  I  H  C  *  V  F  G  Y  L  V  Y  </second_frame>
            <third_frame>   K  V  T  L  C  L  P  K  Q  L  M  I  G  L  S  S  R  K  L  R  E  R  N  L  T  R  S  *  S  L  L  L  V  I  L  H  T  W  I  S  A  M  L  R  G  I  K  R  A  L  Q  K  F  L  A  F  I  R :   S  M  *  G  Q  E  V  E  K  R  L  G  T  I  S  W  *  W  R  T  F  H  L  V  E  L  L  L  G  S  M  I  *  K  E  L  C  M  L  D  L  V  Q  L  A  M  V  Q  E  T  F  F  *  T  K  T  L  *  M  T  *  M  F  L  L  Y  M  S  G  Q  D  Q  R  G  L  C  N  G  L  Y  G  M  T  V  L  S  S  S :   Q  S  M  *  W  T  I  L  Y  L  W  E  W  I  A  N  A  M  N  L  F  V  A  S  L  T  I  S  D  N  I  H  G  T  N  N  S  R  I  G  S  N  L  H  *  W  F  Q  R  I  S  F  L  L  S  Y  L  R  K  S  I  I  R  G  L  G  S  S  L  T  H  I  S  *  V  F  Q  I  I  G  A  P  K  I  L  Q  I  L  V  N  F  F  A  R  *  A  V  *  P  H  S  Q  S  L  M  M  V  I  L  I  N  Q  S  A  L  V  K  G  N  I  K  M  R  T  L  M  P  N  G  S  R  P  L  S  S  V  P  F  *  V  V  L  I  P  G  E  V  I  S  L  C  T  *  L  F  V  A  R  A  S  R  Y  I  P  P  L  I  S  A  I  I  F  S  K  V  M  R  M  A  L  F  F  R  F  I  S  S  L  Q  Y  I  P  K  F  L  *  S  L  M  I  Y  C  K  K  P  F  S  K  L  E  Y  Y  L  S  C  K  G  K  K  D  S  S  *  I  C  *  W  L  K  F  L  A  V  T  I  Y  S  Y  K  S  I  V  E  F  L  V  I  W  Y  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32094" stop="31921"/>
                    <exon start="31803" stop="31540"/>
                    <exon start="31283" stop="30900"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>819</number_coding_nucleotides>
                  <number_encoded_amino_acids>273</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSNSLFAKTVDDRFIIKEIKRAEFDSFLKFAPSYFAYMDQCHAKRNQTCLAKILGIYQVNVRPRGGKETRHDLMVMENLSFGRITTRQYDLKGALHARFSAAGNGAGDVLLDQNFVNDMNVSPLYVGTRSKRALQRAVWNDCTFLKSINVMDYSLLVGVDSQRHELVCGIIDYLRQYTWDKQLENWVKSSLVVPKNQLPTIVSPKEYYKRFRKFIDTHFLSVPDNWCSQNSSNPCQLLRTVSSITPQSESDDGDSDQPKCTGEGEHKDAYSDA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="31175" e_stop="30548"/>
            <exon e_start="29281" e_stop="29236"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.998"/>
          <exon-only e_score="0.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="31175" e_stop="30548" e_length="628"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="30547" i_stop="29282" i_length="1266"/>
          </intron>
          <exon e_serial="2" e_score="0.000">
            <gDNA_exon_boundary e_start="29281" e_stop="29236" e_length="46"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31175" stop="30548"/>
              <exon start="29281" stop="29236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398124" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCGAGAATTGGGTCAAATCTTCACTAGTGGTTCCAAAGAATCAGCTTCCTACTATCGTATCTCCGAAAGAGTATTATAAGAGGTTTAGGAAGTTCATTGACACACATTTCTTAAGTGTTCCAGATAATTGGTGCTCCCAAAATTCTTCAAATCCTTGTCAACTTCTTCGCACGGTAAGCAGTATAACCCCACAGTCAGAGTCTGATGATGGTGATTCTGATCAACCAAAGTGCACTGGTGAAGGGGAACATAAAGATGCGTACTCTGATGCCTAATGGTTCGCGTCCCCTGAGTTCTGTTCCCTTTTAAGTAGTTCTCATCCCCGGTGAAGTCATTAGTTTGTGTACATAGTTGTTTGTCGCCCGAGCATCTAGATATATACCCCCTCTTATTTCTGCGATTATTTTTAGCAAAGTTATGAGGATGGCTTTATTCTTTAGGTTCATTTCTAGCTTACAGTATATACCAAAGTTCTTGTGAAGTCTTATGATTTATTGTAAAAAGCCCTTTAGTAAGCTTGAGTATTATTTAAGCTGTAAAGGGAAAAAAGATAGCAGTTGAATCTGCTGATGGTTGAAATTTTTGGCTGTAACAATATATTCCTATAAATCCATTGTTGAGTTTTTG : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> L  E  N  W  V  K  S  S  L  V  V  P  K  N  Q  L  P  T  I  V  S  P  K  E  Y  Y  K  R  F  R  K  F  I  D  T  H  F  L  S  V  P  D  N  W  C  S  Q  N  S  S  N  P  C  Q  L  L  R  T  V  S  S  I  T  P  Q  S  E  S  D  D  G  D  S  D  Q  P  K  C  T  G  E  G  E  H  K  D  A  Y  S  D  A  *  W  F  A  S  P  E  F  C  S  L  L  S  S  S  H  P  R  *  S  H  *  F  V  Y  I  V  V  C  R  P  S  I  *  I  Y  T  P  S  Y  F  C  D  Y  F  *  Q  S  Y  E  D  G  F  I  L  *  V  H  F  *  L  T  V  Y  T  K  V  L  V  K  S  Y  D  L  L  *  K  A  L  *  *  A  *  V  L  F  K  L  *  R  E  K  R  *  Q  L  N  L  L  M  V  E  I  F  G  C  N  N  I  F  L  *  I  H  C  *  V  F   : V  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </first_frame>
            <second_frame>  S  R  I  G  S  N  L  H  *  W  F  Q  R  I  S  F  L  L  S  Y  L  R  K  S  I  I  R  G  L  G  S  S  L  T  H  I  S  *  V  F  Q  I  I  G  A  P  K  I  L  Q  I  L  V  N  F  F  A  R  *  A  V  *  P  H  S  Q  S  L  M  M  V  I  L  I  N  Q  S  A  L  V  K  G  N  I  K  M  R  T  L  M  P  N  G  S  R  P  L  S  S  V  P  F  *  V  V  L  I  P  G  E  V  I  S  L  C  T  *  L  F  V  A  R  A  S  R  Y  I  P  P  L  I  S  A  I  I  F  S  K  V  M  R  M  A  L  F  F  R  F  I  S  S  L  Q  Y  I  P  K  F  L  *  S  L  M  I  Y  C  K  K  P  F  S  K  L  E  Y  Y  L  S  C  K  G  K  K  D  S  S  *  I  C  *  W  L  K  F  L  A  V  T  I  Y  S  Y  K  S  I  V  E  F  L  :  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </second_frame>
            <third_frame>   R  E  L  G  Q  I  F  T  S  G  S  K  E  S  A  S  Y  Y  R  I  S  E  R  V  L  *  E  V  *  E  V  H  *  H  T  F  L  K  C  S  R  *  L  V  L  P  K  F  F  K  S  L  S  T  S  S  H  G  K  Q  Y  N  P  T  V  R  V  *  *  W  *  F  *  S  T  K  V  H  W  *  R  G  T  *  R  C  V  L  *  C  L  M  V  R  V  P  *  V  L  F  P  F  K  *  F  S  S  P  V  K  S  L  V  C  V  H  S  C  L  S  P  E  H  L  D  I  Y  P  L  L  F  L  R  L  F  L  A  K  L  *  G  W  L  Y  S  L  G  S  F  L  A  Y  S  I  Y  Q  S  S  C  E  V  L  *  F  I  V  K  S  P  L  V  S  L  S  I  I  *  A  V  K  G  K  K  I  A  V  E  S  A  D  G  *  N  F  W  L  *  Q  Y  I  P  I  N  P  L  L  S  F  C :   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31175" stop="30900"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LENWVKSSLVVPKNQLPTIVSPKEYYKRFRKFIDTHFLSVPDNWCSQNSSNPCQLLRTVSSITPQSESDDGDSDQPKCTGEGEHKDAYSDA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="34014" PGL_stop="33049"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34014" e_stop="33879"/>
            <exon e_start="33480" e_stop="33049"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.966" e_score="0.971"/>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="34014" e_stop="33879" e_length="136"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.966">
            <gDNA_intron_boundary i_start="33878" i_stop="33481" i_length="398"/>
          </intron>
          <exon e_serial="2" e_score="0.931">
            <gDNA_exon_boundary e_start="33480" e_stop="33049" e_length="432"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34014" stop="33879"/>
              <exon start="33480" stop="33049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458152" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATGTTTTGTGATGTAGAAAAAGCTTTGAAGGCAATAGAGTCTCGATTTGTTGGAACTACTCTAAATCTTCAAGGATCAATTAGGAAATTTTCTGAAATTGAGAAAATGTTGAAGGAAGAGAGAACTCAATTTGAG : ATTGGTATTCAAAATGTCATTATGGATGGCAATCGGGATGTCGTCATGTATAAACTTCTAATTTTGAATAGAATACGGTTGGAGCTTTTGCTGGAGTCCTGTGTGTGGGATCGCCGTCTTCATTCATTACTATCATCTGATTGTACCGCTGCCAATCCAAAAACTATTGACAAGAGTATCATTGCTATTAACCACATGGAACAACAAGAGGGAAGCAATGTTAATGGACACACTAAAGTTTATCTGGAAAGAGATGACAGAGCATTGGAAGATTGTCCGGATCTGAAAATCAAGCTAGTTGAAGACTCTTGCGGAGATGATAACAGTAGGACAGAAGCTACTGTAGGCAGTCGTGGTGATGTTTTGGATGATGACTGTGATTTGAAACCGAATGTTGAATCATCTGCTAAAGTTCCCATTAAAGAAACTCCC</gDNA_template>
            <first_frame> D  V  L  *  C  R  K  S  F  E  G  N  R  V  S  I  C  W  N  Y  S  K  S  S  R  I  N  *  E  I  F  *  N  *  E  N  V  E  G  R  E  N  S  I  *   : D  W  Y  S  K  C  H  Y  G  W  Q  S  G  C  R  H  V  *  T  S  N  F  E  *  N  T  V  G  A  F  A  G  V  L  C  V  G  S  P  S  S  F  I  T  I  I  *  L  Y  R  C  Q  S  K  N  Y  *  Q  E  Y  H  C  Y  *  P  H  G  T  T  R  G  K  Q  C  *  W  T  H  *  S  L  S  G  K  R  *  Q  S  I  G  R  L  S  G  S  E  N  Q  A  S  *  R  L  L  R  R  *  *  Q  *  D  R  S  Y  C  R  Q  S  W  *  C  F  G  *  *  L  *  F  E  T  E  C  *  I  I  C  *  S  S  H  *  R  N  S  </first_frame>
            <second_frame>  M  F  C  D  V  E  K  A  L  K  A  I  E  S  R  F  V  G  T  T  L  N  L  Q  G  S  I  R  K  F  S  E  I  E  K  M  L  K  E  E  R  T  Q  F  E  :  I  G  I  Q  N  V  I  M  D  G  N  R  D  V  V  M  Y  K  L  L  I  L  N  R  I  R  L  E  L  L  L  E  S  C  V  W  D  R  R  L  H  S  L  L  S  S  D  C  T  A  A  N  P  K  T  I  D  K  S  I  I  A  I  N  H  M  E  Q  Q  E  G  S  N  V  N  G  H  T  K  V  Y  L  E  R  D  D  R  A  L  E  D  C  P  D  L  K  I  K  L  V  E  D  S  C  G  D  D  N  S  R  T  E  A  T  V  G  S  R  G  D  V  L  D  D  D  C  D  L  K  P  N  V  E  S  S  A  K  V  P  I  K  E  T  P </second_frame>
            <third_frame>   C  F  V  M  *  K  K  L  *  R  Q  *  S  L  D  L  L  E  L  L  *  I  F  K  D  Q  L  G  N  F  L  K  L  R  K  C  *  R  K  R  E  L  N  L  R :   L  V  F  K  M  S  L  W  M  A  I  G  M  S  S  C  I  N  F  *  F  *  I  E  Y  G  W  S  F  C  W  S  P  V  C  G  I  A  V  F  I  H  Y  Y  H  L  I  V  P  L  P  I  Q  K  L  L  T  R  V  S  L  L  L  T  T  W  N  N  K  R  E  A  M  L  M  D  T  L  K  F  I  W  K  E  M  T  E  H  W  K  I  V  R  I  *  K  S  S  *  L  K  T  L  A  E  M  I  T  V  G  Q  K  L  L  *  A  V  V  V  M  F  W  M  M  T  V  I  *  N  R  M  L  N  H  L  L  K  F  P  L  K  K  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34013" stop="33879"/>
                    <exon start="33480" stop="33049"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>567</number_coding_nucleotides>
                  <number_encoded_amino_acids>189</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MFCDVEKALKAIESRFVGTTLNLQGSIRKFSEIEKMLKEERTQFEIGIQNVIMDGNRDVVMYKLLILNRIRLELLLESCVWDRRLHSLLSSDCTAANPKTIDKSIIAINHMEQQEGSNVNGHTKVYLERDDRALEDCPDLKIKLVEDSCGDDNSRTEATVGSRGDVLDDDCDLKPNVESSAKVPIKETP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="35216" PGL_stop="34580"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35216" e_stop="35089"/>
            <exon e_start="34870" e_stop="34580"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.847" acc_prob="0.326" e_score="0.984"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="35216" e_stop="35089" e_length="128"/>
          </exon>
          <intron i_serial="1" don_prob="0.847" acc_prob="0.326">
            <gDNA_intron_boundary i_start="35088" i_stop="34871" i_length="218"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34870" e_stop="34580" e_length="291"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35216" stop="35089"/>
              <exon start="34870" stop="34580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245575" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTGATATCAAGCCGTAATGCTTCAAAAGGGACTATGTGTGCACATGGTCATTTTTCTCGCATTAAGTTCTACCAAAATTTTGATATTCCGCTTGGAAGCTTTTTGCAGCAAAATTTGCTAAGTCAG : AAACTCCCATGCAAGAGCTGTGATGGACCTCCTGAAGCTCACATTTTCTATTATGCACATTACAATAAGTTACTTGCAATTCAAGTTCGTTCTCTTCCAAAAGACAAGGGGCTTCCAGGTGAAAGGGAAGGTAAGATTTGGATGTGGAGTCGTTGTGGTAGATGCAAGTTCCAGAGTGGCAGCTCAAAATCTACGAAAAGAGTTTTAGTATCCACTGGTTCACGTGGTTTCTCATTTGGAAAATTTTTGGAGCTCAGGTTCTCAAATTCTTCTTTGTTCAATAGGCTACCT</gDNA_template>
            <first_frame> F  *  Y  Q  A  V  M  L  Q  K  G  L  C  V  H  M  V  I  F  L  A  L  S  S  T  K  I  L  I  F  R  L  E  A  F  C  S  K  I  C  *  V  R :   N  S  H  A  R  A  V  M  D  L  L  K  L  T  F  S  I  M  H  I  T  I  S  Y  L  Q  F  K  F  V  L  F  Q  K  T  R  G  F  Q  V  K  G  K  V  R  F  G  C  G  V  V  V  V  D  A  S  S  R  V  A  A  Q  N  L  R  K  E  F  *  Y  P  L  V  H  V  V  S  H  L  E  N  F  W  S  S  G  S  Q  I  L  L  C  S  I  G  Y   </first_frame>
            <second_frame>  S  D  I  K  P  *  C  F  K  R  D  Y  V  C  T  W  S  F  F  S  H  *  V  L  P  K  F  *  Y  S  A  W  K  L  F  A  A  K  F  A  K  S   : E  T  P  M  Q  E  L  *  W  T  S  *  S  S  H  F  L  L  C  T  L  Q  *  V  T  C  N  S  S  S  F  S  S  K  R  Q  G  A  S  R  *  K  G  R  *  D  L  D  V  E  S  L  W  *  M  Q  V  P  E  W  Q  L  K  I  Y  E  K  S  F  S  I  H  W  F  T  W  F  L  I  W  K  I  F  G  A  Q  V  L  K  F  F  F  V  Q  *  A  T  </second_frame>
            <third_frame>   L  I  S  S  R  N  A  S  K  G  T  M  C  A  H  G  H  F  S  R  I  K  F  Y  Q  N  F  D  I  P  L  G  S  F  L  Q  Q  N  L  L  S  Q  :  K  L  P  C  K  S  C  D  G  P  P  E  A  H  I  F  Y  Y  A  H  Y  N  K  L  L  A  I  Q  V  R  S  L  P  K  D  K  G  L  P  G  E  R  E  G  K  I  W  M  W  S  R  C  G  R  C  K  F  Q  S  G  S  S  K  S  T  K  R  V  L  V  S  T  G  S  R  G  F  S  F  G  K  F  L  E  L  R  F  S  N  S  S  L  F  N  R  L  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35214" stop="35089"/>
                    <exon start="34870" stop="34580"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>417</number_coding_nucleotides>
                  <number_encoded_amino_acids>139</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LISSRNASKGTMCAHGHFSRIKFYQNFDIPLGSFLQQNLLSQKLPCKSCDGPPEAHIFYYAHYNKLLAIQVRSLPKDKGLPGEREGKIWMWSRCGRCKFQSGSSKSTKRVLVSTGSRGFSFGKFLELRFSNSSLFNRLP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="53304" PGL_stop="54081"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53304" e_stop="54081"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.943"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.943">
            <gDNA_exon_boundary e_start="53304" e_stop="54081" e_length="778"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53304" stop="54028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53304" stop="53999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53314" stop="54081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559573" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAATTACTCCAATAACAAACACACAAATCTTCCACTAGGCTCAAATGGATGGCCAATTCTTGGAGAAAACATTGACATGGCTTACTCATCATCCCCAGAGAAATTCATTCATGAAAGAATGGAAAAACACTCATCACAAGTCTTTAAAACCTCCCTCTTAGGCCAAAAAATCGCGATTTTTTGTGGCACTAGTGGTAACAAGTTCTTGTTTTCGAATGAAAACAAACTTCTTACCACATGGTGGCCACCGTCTCTAACCAAACCACTCATGTGCCCGACTCAATCTCAATCTCAAAATTCTGTCAAAGAAATCGCTCTTTTAAATCGCGGATTCCTACGTGAGATCCTAAAACCCGAAAATCTCAAACAATACATCCCTTTTATGGATTCCATGGCTCGTGATCACTTAAAACAAGAATGGATCCCTTTCAAAGAAGTCAAAATTTACCCTCTAGTAAAAAAATATACTTTCAGCTTAGCTTGCAAATTGTTCCTATCAATAGATGATTTTCGACACGTTAAAAAGTTATCGGACCCTTTCGTTCTTGTAACGTCAGGGATGTTTACGGTGCCAATTAATTTGCCCGGTACGCCTTATAATCGCGCGATAAAAGGGGGGAAAATGGTGCATGAGGAGCTTATGAAGATTATTAAGGAGAGGAAGATCAATGAGAAAAATAATCATAGTAATGATTTATTGTCTCAACTTATAAGTTTTAGTGATGAAAATGGTCAATTTATGAATGATGCAGAGATTTACAATAATATTATAGGGTT</gDNA_template>
            <first_frame> A  I  T  P  I  T  N  T  Q  I  F  H  *  A  Q  M  D  G  Q  F  L  E  K  T  L  T  W  L  T  H  H  P  Q  R  N  S  F  M  K  E  W  K  N  T  H  H  K  S  L  K  P  P  S  *  A  K  K  S  R  F  F  V  A  L  V  V  T  S  S  C  F  R  M  K  T  N  F  L  P  H  G  G  H  R  L  *  P  N  H  S  C  A  R  L  N  L  N  L  K  I  L  S  K  K  S  L  F  *  I  A  D  S  Y  V  R  S  *  N  P  K  I  S  N  N  T  S  L  L  W  I  P  W  L  V  I  T  *  N  K  N  G  S  L  S  K  K  S  K  F  T  L  *  *  K  N  I  L  S  A  *  L  A  N  C  S  Y  Q  *  M  I  F  D  T  L  K  S  Y  R  T  L  S  F  L  *  R  Q  G  C  L  R  C  Q  L  I  C  P  V  R  L  I  I  A  R  *  K  G  G  K  W  C  M  R  S  L  *  R  L  L  R  R  G  R  S  M  R  K  I  I  I  V  M  I  Y  C  L  N  L  *  V  L  V  M  K  M  V  N  L  *  M  M  Q  R  F  T  I  I  L  *  G  </first_frame>
            <second_frame>  Q  L  L  Q  *  Q  T  H  K  S  S  T  R  L  K  W  M  A  N  S  W  R  K  H  *  H  G  L  L  I  I  P  R  E  I  H  S  *  K  N  G  K  T  L  I  T  S  L  *  N  L  P  L  R  P  K  N  R  D  F  L  W  H  *  W  *  Q  V  L  V  F  E  *  K  Q  T  S  Y  H  M  V  A  T  V  S  N  Q  T  T  H  V  P  D  S  I  S  I  S  K  F  C  Q  R  N  R  S  F  K  S  R  I  P  T  *  D  P  K  T  R  K  S  Q  T  I  H  P  F  Y  G  F  H  G  S  *  S  L  K  T  R  M  D  P  F  Q  R  S  Q  N  L  P  S  S  K  K  I  Y  F  Q  L  S  L  Q  I  V  P  I  N  R  *  F  S  T  R  *  K  V  I  G  P  F  R  S  C  N  V  R  D  V  Y  G  A  N  *  F  A  R  Y  A  L  *  S  R  D  K  R  G  E  N  G  A  *  G  A  Y  E  D  Y  *  G  E  E  D  Q  *  E  K  *  S  *  *  *  F  I  V  S  T  Y  K  F  *  *  *  K  W  S  I  Y  E  *  C  R  D  L  Q  *  Y  Y  R  V </second_frame>
            <third_frame>   N  Y  S  N  N  K  H  T  N  L  P  L  G  S  N  G  W  P  I  L  G  E  N  I  D  M  A  Y  S  S  S  P  E  K  F  I  H  E  R  M  E  K  H  S  S  Q  V  F  K  T  S  L  L  G  Q  K  I  A  I  F  C  G  T  S  G  N  K  F  L  F  S  N  E  N  K  L  L  T  T  W  W  P  P  S  L  T  K  P  L  M  C  P  T  Q  S  Q  S  Q  N  S  V  K  E  I  A  L  L  N  R  G  F  L  R  E  I  L  K  P  E  N  L  K  Q  Y  I  P  F  M  D  S  M  A  R  D  H  L  K  Q  E  W  I  P  F  K  E  V  K  I  Y  P  L  V  K  K  Y  T  F  S  L  A  C  K  L  F  L  S  I  D  D  F  R  H  V  K  K  L  S  D  P  F  V  L  V  T  S  G  M  F  T  V  P  I  N  L  P  G  T  P  Y  N  R  A  I  K  G  G  K  M  V  H  E  E  L  M  K  I  I  K  E  R  K  I  N  E  K  N  N  H  S  N  D  L  L  S  Q  L  I  S  F  S  D  E  N  G  Q  F  M  N  D  A  E  I  Y  N  N  I  I  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53306" stop="54079"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>774</number_coding_nucleotides>
                  <number_encoded_amino_acids>258</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NYSNNKHTNLPLGSNGWPILGENIDMAYSSSPEKFIHERMEKHSSQVFKTSLLGQKIAIFCGTSGNKFLFSNENKLLTTWWPPSLTKPLMCPTQSQSQNSVKEIALLNRGFLREILKPENLKQYIPFMDSMARDHLKQEWIPFKEVKIYPLVKKYTFSLACKLFLSIDDFRHVKKLSDPFVLVTSGMFTVPINLPGTPYNRAIKGGKMVHEELMKIIKERKINEKNNHSNDLLSQLISFSDENGQFMNDAEIYNNIIG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="56543" PGL_stop="57120"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56543" e_stop="57120"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="56543" e_stop="57120" e_length="578"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56543" stop="57120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318108" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCCTTTTGCTTAGTTTCCTCTTTTCTTGTTGTGTGTGTAATCCCACTCAGAGCATCTTTAATCTGGTTTGTCTTCATTACTTTTGCTTATTATTGATTGGATTTCATCTATTGGTGGACTAATTAGGGCTTAGTCTTGTTGTCCACTCATATTAATTAGTTGTCTACTATTGCTAGTGTCTGATTTTCGAATATCATATTCTCTTCAGACCCCATTTATGTTGTTGTTGTTGGGGGGTTTCAGGATTGTTAAATGTTTTTTTTGAAAACTTTGTTTCTATGTAATTTACTTTTCTGTTGGAGGTTGGTCTGAGGGTTGGGGGTAGGATGTTCGATGGGGATGCTGTTATTCAGTGTTTGGAAATTAAATGTAGGTTTCAATGAACATGGACGGCTTTCTTGTGGTAGTAATTGCGAACATCTCTCCTCTGCTCAGTTTGCCTACGAGCCGTCTTAGGCACATCTCTCTATCTTAGTTTCTTTTAAATTTCAAAGACTTAAAAGTGTATAAATATCCTCATTTGGGATTATAACTAATTTTCTCAAATAACTAACTAACTACACTCATTTCTGGTTTA</gDNA_template>
            <first_frame> T  L  L  L  S  F  L  F  S  C  C  V  C  N  P  T  Q  S  I  F  N  L  V  C  L  H  Y  F  C  L  L  L  I  G  F  H  L  L  V  D  *  L  G  L  S  L  V  V  H  S  Y  *  L  V  V  Y  Y  C  *  C  L  I  F  E  Y  H  I  L  F  R  P  H  L  C  C  C  C  W  G  V  S  G  L  L  N  V  F  F  E  N  F  V  S  M  *  F  T  F  L  L  E  V  G  L  R  V  G  G  R  M  F  D  G  D  A  V  I  Q  C  L  E  I  K  C  R  F  Q  *  T  W  T  A  F  L  W  *  *  L  R  T  S  L  L  C  S  V  C  L  R  A  V  L  G  T  S  L  Y  L  S  F  F  *  I  S  K  T  *  K  C  I  N  I  L  I  W  D  Y  N  *  F  S  Q  I  T  N  *  L  H  S  F  L  V   </first_frame>
            <second_frame>  P  F  C  L  V  S  S  F  L  V  V  C  V  I  P  L  R  A  S  L  I  W  F  V  F  I  T  F  A  Y  Y  *  L  D  F  I  Y  W  W  T  N  *  G  L  V  L  L  S  T  H  I  N  *  L  S  T  I  A  S  V  *  F  S  N  I  I  F  S  S  D  P  I  Y  V  V  V  V  G  G  F  Q  D  C  *  M  F  F  L  K  T  L  F  L  C  N  L  L  F  C  W  R  L  V  *  G  L  G  V  G  C  S  M  G  M  L  L  F  S  V  W  K  L  N  V  G  F  N  E  H  G  R  L  S  C  G  S  N  C  E  H  L  S  S  A  Q  F  A  Y  E  P  S  *  A  H  L  S  I  L  V  S  F  K  F  Q  R  L  K  S  V  *  I  S  S  F  G  I  I  T  N  F  L  K  *  L  T  N  Y  T  H  F  W  F  </second_frame>
            <third_frame>   P  F  A  *  F  P  L  F  L  L  C  V  *  S  H  S  E  H  L  *  S  G  L  S  S  L  L  L  L  I  I  D  W  I  S  S  I  G  G  L  I  R  A  *  S  C  C  P  L  I  L  I  S  C  L  L  L  L  V  S  D  F  R  I  S  Y  S  L  Q  T  P  F  M  L  L  L  L  G  G  F  R  I  V  K  C  F  F  *  K  L  C  F  Y  V  I  Y  F  S  V  G  G  W  S  E  G  W  G  *  D  V  R  W  G  C  C  Y  S  V  F  G  N  *  M  *  V  S  M  N  M  D  G  F  L  V  V  V  I  A  N  I  S  P  L  L  S  L  P  T  S  R  L  R  H  I  S  L  S  *  F  L  L  N  F  K  D  L  K  V  Y  K  Y  P  H  L  G  L  *  L  I  F  S  N  N  *  L  T  T  L  I  S  G  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLm0118M03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="57246" PGL_stop="58726"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57246" e_stop="58635"/>
            <exon e_start="58709" e_stop="58726"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.961"/>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="57246" e_stop="58635" e_length="1390"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="58636" i_stop="58708" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="0.944">
            <gDNA_exon_boundary e_start="58709" e_stop="58726" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57246" stop="57797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57631" stop="58158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57961" stop="58551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425291" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58411" stop="58635"/>
              <exon start="58709" stop="58726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598272" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAAGTATGTCTTTTCTTGAACAAAAGATTCATCAACTCCGGGAGCTGGTGCGTATAATTGTTGACCATAGAAGTCTAGCTGGGATTCAGGGAAGTGACCTTTCAATTCAGCAACAACAGCTTATAACAGCTGATCTTACCTCTATTATTATTCAATTGATATCAACTGCAGGGAGTCTTCTTCCAACCGTGAAGCATCAAGCGAATCCACCTACCAAGCGACTCGAGCAGTTTGGTGGTGCTTCCGTTCCTTCTGAAACAGGTACTAATATTGGTGCTCTGACATGTAATGGTTATGTGCCCAAGGCAAAAGATCAGCTCAGCCATGTTGATCAAATGGGAGATTGTTTTGTTGATGAACATGAGGCGAAAGATGAAGATGAACCCCATGAGGAAGAGAACCTACCTCCTGGTTCCTACGAGATTCTGCAGCTGGAGAAAGAGGAAATTCTTGCACCTCATACTCACTTTTGCACAATTTGTGGGAAGGGATTTAAGAGAGATGCCAATTTGCGGATGCACATGAGGGGTCATGGGGATGAATACAAAACTTCAGCTGCTCTTATAAAGCCTCAGAAGGATTCCAGCTCTGGGACGACGCTTATTAAAAGGTATTCATGTCCTTGTATTGGTTGCAAGCGCAATAAAGAGCACAAAAAGTTTCAGCCACTAAAGACTATCTTATGTGTGAAAAACCATTACAGAAGAACTCACTGTGAGAAAAGATATGCTTGTAGTAGGTGCAATTTGAAGAAATTTTCAGTTATTGCAGATCTTAGAACACATGAGAAACATTGTGGTAAAGATAAATGGCTTTGTTCTTGTGGAACAACCTTTTCCAGGAAAGACAAGCTTTTCGGGCACATTTCCCTTTTCCAAGGACACACACCTGCAATTCCTCTAGATGAAACCAAAGGTTTTGCTCAGACATCCAATCAAGGCCAACCAATGATGCAACTACAAAGGCTGGAAATATAGATTTTGAGATAAATGTTCAGAATGACAGTGGACCTCAAAATACAATGAATGTTAAAGGGTGTACAGATAACCCTGACAGTTATTTCTCATCTTCGAACTTTGAAACTATCAAGCTTAACGAACTGCAAGAGTTCCCTCAACCATCATTTGAGGACCAAGAAAACTCATTCTCTTTTCTACTGTCAGGTTCATGTAATTACCCCCGGAAGGCTGGAAAAACATAGGTTCTACTGAACTGGAATAGTTCAAGTAAATTTGTCTTTGGTTTAATGGTGTCTAGTTTTCTTATTATGTCAGTTCTTTATGAATAAATGACGTCTTTCATTAGTGTGCATTGCTCTTTTTGACTGCTTAAAAATGTTATACCTGGCTCGACTAGGTACTTGGCAAGACTCTAATCTCAAGTCAACA : ATATTAGAATATTTTTTT</gDNA_template>
            <first_frame> *  K  Y  V  F  S  *  T  K  D  S  S  T  P  G  A  G  A  Y  N  C  *  P  *  K  S  S  W  D  S  G  K  *  P  F  N  S  A  T  T  A  Y  N  S  *  S  Y  L  Y  Y  Y  S  I  D  I  N  C  R  E  S  S  S  N  R  E  A  S  S  E  S  T  Y  Q  A  T  R  A  V  W  W  C  F  R  S  F  *  N  R  Y  *  Y  W  C  S  D  M  *  W  L  C  A  Q  G  K  R  S  A  Q  P  C  *  S  N  G  R  L  F  C  *  *  T  *  G  E  R  *  R  *  T  P  *  G  R  E  P  T  S  W  F  L  R  D  S  A  A  G  E  R  G  N  S  C  T  S  Y  S  L  L  H  N  L  W  E  G  I  *  E  R  C  Q  F  A  D  A  H  E  G  S  W  G  *  I  Q  N  F  S  C  S  Y  K  A  S  E  G  F  Q  L  W  D  D  A  Y  *  K  V  F  M  S  L  Y  W  L  Q  A  Q  *  R  A  Q  K  V  S  A  T  K  D  Y  L  M  C  E  K  P  L  Q  K  N  S  L  *  E  K  I  C  L  *  *  V  Q  F  E  E  I  F  S  Y  C  R  S  *  N  T  *  E  T  L  W  *  R  *  M  A  L  F  L  W  N  N  L  F  Q  E  R  Q  A  F  R  A  H  F  P  F  P  R  T  H  T  C  N  S  S  R  *  N  Q  R  F  C  S  D  I  Q  S  R  P  T  N  D  A  T  T  K  A  G  N  I  D  F  E  I  N  V  Q  N  D  S  G  P  Q  N  T  M  N  V  K  G  C  T  D  N  P  D  S  Y  F  S  S  S  N  F  E  T  I  K  L  N  E  L  Q  E  F  P  Q  P  S  F  E  D  Q  E  N  S  F  S  F  L  L  S  G  S  C  N  Y  P  R  K  A  G  K  T  *  V  L  L  N  W  N  S  S  S  K  F  V  F  G  L  M  V  S  S  F  L  I  M  S  V  L  Y  E  *  M  T  S  F  I  S  V  H  C  S  F  *  L  L  K  N  V  I  P  G  S  T  R  Y  L  A  R  L  *  S  Q  V  N   : N  I  R  I  F  F  </first_frame>
            <second_frame>  K  S  M  S  F  L  E  Q  K  I  H  Q  L  R  E  L  V  R  I  I  V  D  H  R  S  L  A  G  I  Q  G  S  D  L  S  I  Q  Q  Q  Q  L  I  T  A  D  L  T  S  I  I  I  Q  L  I  S  T  A  G  S  L  L  P  T  V  K  H  Q  A  N  P  P  T  K  R  L  E  Q  F  G  G  A  S  V  P  S  E  T  G  T  N  I  G  A  L  T  C  N  G  Y  V  P  K  A  K  D  Q  L  S  H  V  D  Q  M  G  D  C  F  V  D  E  H  E  A  K  D  E  D  E  P  H  E  E  E  N  L  P  P  G  S  Y  E  I  L  Q  L  E  K  E  E  I  L  A  P  H  T  H  F  C  T  I  C  G  K  G  F  K  R  D  A  N  L  R  M  H  M  R  G  H  G  D  E  Y  K  T  S  A  A  L  I  K  P  Q  K  D  S  S  S  G  T  T  L  I  K  R  Y  S  C  P  C  I  G  C  K  R  N  K  E  H  K  K  F  Q  P  L  K  T  I  L  C  V  K  N  H  Y  R  R  T  H  C  E  K  R  Y  A  C  S  R  C  N  L  K  K  F  S  V  I  A  D  L  R  T  H  E  K  H  C  G  K  D  K  W  L  C  S  C  G  T  T  F  S  R  K  D  K  L  F  G  H  I  S  L  F  Q  G  H  T  P  A  I  P  L  D  E  T  K  G  F  A  Q  T  S  N  Q  G  Q  P  M  M  Q  L  Q  R  L  E  I  *  I  L  R  *  M  F  R  M  T  V  D  L  K  I  Q  *  M  L  K  G  V  Q  I  T  L  T  V  I  S  H  L  R  T  L  K  L  S  S  L  T  N  C  K  S  S  L  N  H  H  L  R  T  K  K  T  H  S  L  F  Y  C  Q  V  H  V  I  T  P  G  R  L  E  K  H  R  F  Y  *  T  G  I  V  Q  V  N  L  S  L  V  *  W  C  L  V  F  L  L  C  Q  F  F  M  N  K  *  R  L  S  L  V  C  I  A  L  F  D  C  L  K  M  L  Y  L  A  R  L  G  T  W  Q  D  S  N  L  K  S  T  :  I  L  E  Y  F  F </second_frame>
            <third_frame>   K  V  C  L  F  L  N  K  R  F  I  N  S  G  S  W  C  V  *  L  L  T  I  E  V  *  L  G  F  R  E  V  T  F  Q  F  S  N  N  S  L  *  Q  L  I  L  P  L  L  L  F  N  *  Y  Q  L  Q  G  V  F  F  Q  P  *  S  I  K  R  I  H  L  P  S  D  S  S  S  L  V  V  L  P  F  L  L  K  Q  V  L  I  L  V  L  *  H  V  M  V  M  C  P  R  Q  K  I  S  S  A  M  L  I  K  W  E  I  V  L  L  M  N  M  R  R  K  M  K  M  N  P  M  R  K  R  T  Y  L  L  V  P  T  R  F  C  S  W  R  K  R  K  F  L  H  L  I  L  T  F  A  Q  F  V  G  R  D  L  R  E  M  P  I  C  G  C  T  *  G  V  M  G  M  N  T  K  L  Q  L  L  L  *  S  L  R  R  I  P  A  L  G  R  R  L  L  K  G  I  H  V  L  V  L  V  A  S  A  I  K  S  T  K  S  F  S  H  *  R  L  S  Y  V  *  K  T  I  T  E  E  L  T  V  R  K  D  M  L  V  V  G  A  I  *  R  N  F  Q  L  L  Q  I  L  E  H  M  R  N  I  V  V  K  I  N  G  F  V  L  V  E  Q  P  F  P  G  K  T  S  F  S  G  T  F  P  F  S  K  D  T  H  L  Q  F  L  *  M  K  P  K  V  L  L  R  H  P  I  K  A  N  Q  *  C  N  Y  K  G  W  K  Y  R  F  *  D  K  C  S  E  *  Q  W  T  S  K  Y  N  E  C  *  R  V  Y  R  *  P  *  Q  L  F  L  I  F  E  L  *  N  Y  Q  A  *  R  T  A  R  V  P  S  T  I  I  *  G  P  R  K  L  I  L  F  S  T  V  R  F  M  *  L  P  P  E  G  W  K  N  I  G  S  T  E  L  E  *  F  K  *  I  C  L  W  F  N  G  V  *  F  S  Y  Y  V  S  S  L  *  I  N  D  V  F  H  *  C  A  L  L  F  L  T  A  *  K  C  Y  T  W  L  D  *  V  L  G  K  T  L  I  S  S  Q  Q :   Y  *  N  I  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57247" stop="58224"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>975</number_coding_nucleotides>
                  <number_encoded_amino_acids>325</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSMSFLEQKIHQLRELVRIIVDHRSLAGIQGSDLSIQQQQLITADLTSIIIQLISTAGSLLPTVKHQANPPTKRLEQFGGASVPSETGTNIGALTCNGYVPKAKDQLSHVDQMGDCFVDEHEAKDEDEPHEEENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTSAALIKPQKDSSSGTTLIKRYSCPCIGCKRNKEHKKFQPLKTILCVKNHYRRTHCEKRYACSRCNLKKFSVIADLRTHEKHCGKDKWLCSCGTTFSRKDKLFGHISLFQGHTPAIPLDETKGFAQTSNQGQPMMQLQRLEI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="60522" PGL_stop="61136"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60522" e_stop="61136"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.943"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.943">
            <gDNA_exon_boundary e_start="60522" e_stop="61136" e_length="615"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60522" stop="61136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414593" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGTCATATTCTCTTTATCTGGAGTGAAAATTTGTTCACTATTCTTAATTATATTTGAGAGCAAAGTAGATGATCCGACATTCTCTGTGTAATATTCAAGACCTTCAGCTTGTGTTAGTATGGAATCAAAAGCCTCTTTCATTGGGGAAGATCTAAAAGATTTTGGATTCTTAATTTGCTGCTCTGAACAGCTCATCTTCTTCATTGACCTTGGTGAATGAGTGTTTGCGGAAAAATCCACTTTTTCCAGAGTAATATTCTCTTCACCATTCTCATCCATACAACAAGAAAGAATAGGTTTTGTAGCTTGTCCATCAGCAAGACATGAGTTCTTCTCGGACCCAAGTAAGAGAGAACTAGGAACATGGTTCTCTTTGTCTGGAGTGAAGGCGTCTTCTTCATCCTTGTTTCCAACAGAAAAAGGATCATGGAAAACTGATTCCATTGCAACCTTCTCATGATCACCTGTGTGAACTTCAGTATCAATGTCAACTTTTTCAATAACAGCTCTATCTCGGCCAGTTTGAATCTGAACAGTAGAATATTTTCCCCGTCTAGACCAAATGTTCAAACATCTTTGCTGAGATCTTACTGGAGTACTATCTTCATTTTCTG</gDNA_template>
            <first_frame> V  S  Y  S  L  Y  L  E  *  K  F  V  H  Y  S  *  L  Y  L  R  A  K  *  M  I  R  H  S  L  C  N  I  Q  D  L  Q  L  V  L  V  W  N  Q  K  P  L  S  L  G  K  I  *  K  I  L  D  S  *  F  A  A  L  N  S  S  S  S  S  L  T  L  V  N  E  C  L  R  K  N  P  L  F  P  E  *  Y  S  L  H  H  S  H  P  Y  N  K  K  E  *  V  L  *  L  V  H  Q  Q  D  M  S  S  S  R  T  Q  V  R  E  N  *  E  H  G  S  L  C  L  E  *  R  R  L  L  H  P  C  F  Q  Q  K  K  D  H  G  K  L  I  P  L  Q  P  S  H  D  H  L  C  E  L  Q  Y  Q  C  Q  L  F  Q  *  Q  L  Y  L  G  Q  F  E  S  E  Q  *  N  I  F  P  V  *  T  K  C  S  N  I  F  A  E  I  L  L  E  Y  Y  L  H  F  L </first_frame>
            <second_frame>  C  H  I  L  F  I  W  S  E  N  L  F  T  I  L  N  Y  I  *  E  Q  S  R  *  S  D  I  L  C  V  I  F  K  T  F  S  L  C  *  Y  G  I  K  S  L  F  H  W  G  R  S  K  R  F  W  I  L  N  L  L  L  *  T  A  H  L  L  H  *  P  W  *  M  S  V  C  G  K  I  H  F  F  Q  S  N  I  L  F  T  I  L  I  H  T  T  R  K  N  R  F  C  S  L  S  I  S  K  T  *  V  L  L  G  P  K  *  E  R  T  R  N  M  V  L  F  V  W  S  E  G  V  F  F  I  L  V  S  N  R  K  R  I  M  E  N  *  F  H  C  N  L  L  M  I  T  C  V  N  F  S  I  N  V  N  F  F  N  N  S  S  I  S  A  S  L  N  L  N  S  R  I  F  S  P  S  R  P  N  V  Q  T  S  L  L  R  S  Y  W  S  T  I  F  I  F   </second_frame>
            <third_frame>   V  I  F  S  L  S  G  V  K  I  C  S  L  F  L  I  I  F  E  S  K  V  D  D  P  T  F  S  V  *  Y  S  R  P  S  A  C  V  S  M  E  S  K  A  S  F  I  G  E  D  L  K  D  F  G  F  L  I  C  C  S  E  Q  L  I  F  F  I  D  L  G  E  *  V  F  A  E  K  S  T  F  S  R  V  I  F  S  S  P  F  S  S  I  Q  Q  E  R  I  G  F  V  A  C  P  S  A  R  H  E  F  F  S  D  P  S  K  R  E  L  G  T  W  F  S  L  S  G  V  K  A  S  S  S  S  L  F  P  T  E  K  G  S  W  K  T  D  S  I  A  T  F  S  *  S  P  V  *  T  S  V  S  M  S  T  F  S  I  T  A  L  S  R  P  V  *  I  *  T  V  E  Y  F  P  R  L  D  Q  M  F  K  H  L  C  *  D  L  T  G  V  L  S  S  F  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60743" stop="60982"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFAEKSTFSRVIFSSPFSSIQQERIGFVACPSARHEFFSDPSKRELGTWFSLSGVKASSSSLFPTEKGSWKTDSIATFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="62379" PGL_stop="61312"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62379" e_stop="62068"/>
            <exon e_start="61712" e_stop="61504"/>
            <exon e_start="61425" e_stop="61312"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.986" e_score="0.964"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="0.938"/>
          <exon-only e_score="0.877"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="62379" e_stop="62068" e_length="312"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.986">
            <gDNA_intron_boundary i_start="62067" i_stop="61713" i_length="355"/>
          </intron>
          <exon e_serial="2" e_score="0.938">
            <gDNA_exon_boundary e_start="61712" e_stop="61504" e_length="209"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="61503" i_stop="61426" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="0.877">
            <gDNA_exon_boundary e_start="61425" e_stop="61312" e_length="114"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62379" stop="62076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62207" stop="62068"/>
              <exon start="61712" stop="61504"/>
              <exon start="61425" stop="61312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474126" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTTTTCTCTCCCATGGCGGAAAAGCAAGAATCTTTGGGAAAACCCAATTCGCAGAGTGAAGAAGAGAAGAAGATTCCAGTGTTTACGGTGCTAAAGAATGGTGCCATCCTCAAGAATATCTTTCTTCTTGACAATCCCCCTGTCACACCTGTTGCAATCACAGCAAATCAAGAATTTGAAGAGATTTTGGTAGTTGGAAGACACCCAGATTGTAACATTGTACTGGAACACCCAAGCATTAGCAGATTTCACCTCCGAATTCACTCTAATCCCTCTTCTCATTCCCTCTCTGTTATTGATCTGTCTTCGG : TCCATGGGTCATGGATTTCTGGTAGCAAGATTGAACCAGGGGTTCGAGTTGAGTTGAAAGAGGGTGATAAGATGAAGCTAGGAGGTTCAAGCAGGGAATACATGCTTCACTGGATTCCAATAAGTCGCGCATATGATTTAGAGAATCCGTTTGTAGCTCCGCTAGGTGAGGCAGAACCATTCGAAGAAATGGAGGAGAAAGAACATCAG : GATGAGAATGGCTTTGCTCTTCAGAATGAGGGTGATGATTTGGTGAATAAGCAAGATTCATCGTGTTCTTATTCGAGTTTGTTGCCATATGTTAAATGTTTGACTCCGTCGGCT</gDNA_template>
            <first_frame> L  F  S  L  P  W  R  K  S  K  N  L  W  E  N  P  I  R  R  V  K  K  R  R  R  F  Q  C  L  R  C  *  R  M  V  P  S  S  R  I  S  F  F  L  T  I  P  L  S  H  L  L  Q  S  Q  Q  I  K  N  L  K  R  F  W  *  L  E  D  T  Q  I  V  T  L  Y  W  N  T  Q  A  L  A  D  F  T  S  E  F  T  L  I  P  L  L  I  P  S  L  L  L  I  C  L  R  :  S  M  G  H  G  F  L  V  A  R  L  N  Q  G  F  E  L  S  *  K  R  V  I  R  *  S  *  E  V  Q  A  G  N  T  C  F  T  G  F  Q  *  V  A  H  M  I  *  R  I  R  L  *  L  R  *  V  R  Q  N  H  S  K  K  W  R  R  K  N  I  R :   M  R  M  A  L  L  F  R  M  R  V  M  I  W  *  I  S  K  I  H  R  V  L  I  R  V  C  C  H  M  L  N  V  *  L  R  R   </first_frame>
            <second_frame>  S  F  L  S  H  G  G  K  A  R  I  F  G  K  T  Q  F  A  E  *  R  R  E  E  D  S  S  V  Y  G  A  K  E  W  C  H  P  Q  E  Y  L  S  S  *  Q  S  P  C  H  T  C  C  N  H  S  K  S  R  I  *  R  D  F  G  S  W  K  T  P  R  L  *  H  C  T  G  T  P  K  H  *  Q  I  S  P  P  N  S  L  *  S  L  F  S  F  P  L  C  Y  *  S  V  F  G :   P  W  V  M  D  F  W  *  Q  D  *  T  R  G  S  S  *  V  E  R  G  *  *  D  E  A  R  R  F  K  Q  G  I  H  A  S  L  D  S  N  K  S  R  I  *  F  R  E  S  V  C  S  S  A  R  *  G  R  T  I  R  R  N  G  G  E  R  T  S   : G  *  E  W  L  C  S  S  E  *  G  *  *  F  G  E  *  A  R  F  I  V  F  L  F  E  F  V  A  I  C  *  M  F  D  S  V  G  </second_frame>
            <third_frame>   L  F  S  P  M  A  E  K  Q  E  S  L  G  K  P  N  S  Q  S  E  E  E  K  K  I  P  V  F  T  V  L  K  N  G  A  I  L  K  N  I  F  L  L  D  N  P  P  V  T  P  V  A  I  T  A  N  Q  E  F  E  E  I  L  V  V  G  R  H  P  D  C  N  I  V  L  E  H  P  S  I  S  R  F  H  L  R  I  H  S  N  P  S  S  H  S  L  S  V  I  D  L  S  S   : V  H  G  S  W  I  S  G  S  K  I  E  P  G  V  R  V  E  L  K  E  G  D  K  M  K  L  G  G  S  S  R  E  Y  M  L  H  W  I  P  I  S  R  A  Y  D  L  E  N  P  F  V  A  P  L  G  E  A  E  P  F  E  E  M  E  E  K  E  H  Q  :  D  E  N  G  F  A  L  Q  N  E  G  D  D  L  V  N  K  Q  D  S  S  C  S  Y  S  S  L  L  P  Y  V  K  C  L  T  P  S  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62377" stop="62068"/>
                    <exon start="61712" stop="61504"/>
                    <exon start="61425" stop="61312"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>633</number_coding_nucleotides>
                  <number_encoded_amino_acids>211</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFSPMAEKQESLGKPNSQSEEEKKIPVFTVLKNGAILKNIFLLDNPPVTPVAITANQEFEEILVVGRHPDCNIVLEHPSISRFHLRIHSNPSSHSLSVIDLSSVHGSWISGSKIEPGVRVELKEGDKMKLGGSSREYMLHWIPISRAYDLENPFVAPLGEAEPFEEMEEKEHQDENGFALQNEGDDLVNKQDSSCSYSSLLPYVKCLTPSA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="63977" PGL_stop="63492"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63977" e_stop="63492"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="63977" e_stop="63492" e_length="486"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63977" stop="63492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334725" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCAAGAATTCGCTACTGCAAGAACTAGGCTTAGCAAGTTCCACAGGCTGAGTAAGAGTAGTAACCATTCCCCTATACGTGAAACCAGGAAGGATCCCTTTCCCGTCAGGAGACTGTCTTCTGTTCCAGTAATCGATTTTAACATGGATCGACTCAAAGCTTTGGATGTCATTGATCGAGTGGACACAATTCGAAGTACATAATGGTACACTGATATAGCTGGGTTGGCAGAGAGGGGATCCTTTATTTGAGGCATCATTTTTCTGCTGCATTTGGTTATCTTCTTTATGCTAAGCATGAGCCGATCATTTTCCTCTACTGACGTCGTACTATGTTCTAAGTTTGTGATGGGGAACAACAAGATATCAGAAAAGCGTTCAAAATCTGCTATCTGTTCTGCTGCAAATTTTCCGGTAAAGTTAGGGTACTATGATGGGTGAAAGTATTCTGGCCTGGTTTGGTATTGTCTGGTCTCTGTGCTTGCAAG</gDNA_template>
            <first_frame> P  R  I  R  Y  C  K  N  *  A  *  Q  V  P  Q  A  E  *  E  *  *  P  F  P  Y  T  *  N  Q  E  G  S  L  S  R  Q  E  T  V  F  C  S  S  N  R  F  *  H  G  S  T  Q  S  F  G  C  H  *  S  S  G  H  N  S  K  Y  I  M  V  H  *  Y  S  W  V  G  R  E  G  I  L  Y  L  R  H  H  F  S  A  A  F  G  Y  L  L  Y  A  K  H  E  P  I  I  F  L  Y  *  R  R  T  M  F  *  V  C  D  G  E  Q  Q  D  I  R  K  A  F  K  I  C  Y  L  F  C  C  K  F  S  G  K  V  R  V  L  *  W  V  K  V  F  W  P  G  L  V  L  S  G  L  C  A  C  K </first_frame>
            <second_frame>  Q  E  F  A  T  A  R  T  R  L  S  K  F  H  R  L  S  K  S  S  N  H  S  P  I  R  E  T  R  K  D  P  F  P  V  R  R  L  S  S  V  P  V  I  D  F  N  M  D  R  L  K  A  L  D  V  I  D  R  V  D  T  I  R  S  T  *  W  Y  T  D  I  A  G  L  A  E  R  G  S  F  I  *  G  I  I  F  L  L  H  L  V  I  F  F  M  L  S  M  S  R  S  F  S  S  T  D  V  V  L  C  S  K  F  V  M  G  N  N  K  I  S  E  K  R  S  K  S  A  I  C  S  A  A  N  F  P  V  K  L  G  Y  Y  D  G  *  K  Y  S  G  L  V  W  Y  C  L  V  S  V  L  A   </second_frame>
            <third_frame>   K  N  S  L  L  Q  E  L  G  L  A  S  S  T  G  *  V  R  V  V  T  I  P  L  Y  V  K  P  G  R  I  P  F  P  S  G  D  C  L  L  F  Q  *  S  I  L  T  W  I  D  S  K  L  W  M  S  L  I  E  W  T  Q  F  E  V  H  N  G  T  L  I  *  L  G  W  Q  R  G  D  P  L  F  E  A  S  F  F  C  C  I  W  L  S  S  L  C  *  A  *  A  D  H  F  P  L  L  T  S  Y  Y  V  L  S  L  *  W  G  T  T  R  Y  Q  K  S  V  Q  N  L  L  S  V  L  L  Q  I  F  R  *  S  *  G  T  M  M  G  E  S  I  L  A  W  F  G  I  V  W  S  L  C  L  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63976" stop="63776"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QEFATARTRLSKFHRLSKSSNHSPIRETRKDPFPVRRLSSVPVIDFNMDRLKALDVIDRVDTIRST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="68004" PGL_stop="64009"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68004" e_stop="67996"/>
            <exon e_start="67824" e_stop="67755"/>
            <exon e_start="67136" e_stop="67042"/>
            <exon e_start="65422" e_stop="65306"/>
            <exon e_start="65198" e_stop="65122"/>
            <exon e_start="64409" e_stop="64365"/>
            <exon e_start="64277" e_stop="64009"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.723" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.894" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68004" e_stop="67996" e_length="9"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.961">
            <gDNA_intron_boundary i_start="67995" i_stop="67825" i_length="171"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67824" e_stop="67755" e_length="70"/>
          </exon>
          <intron i_serial="2" don_prob="0.967" acc_prob="0.989">
            <gDNA_intron_boundary i_start="67754" i_stop="67137" i_length="618"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67136" e_stop="67042" e_length="95"/>
          </exon>
          <intron i_serial="3" don_prob="0.723" acc_prob="0.983">
            <gDNA_intron_boundary i_start="67041" i_stop="65423" i_length="1619"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="65422" e_stop="65306" e_length="117"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.894">
            <gDNA_intron_boundary i_start="65305" i_stop="65199" i_length="107"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="65198" e_stop="65122" e_length="77"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="65121" i_stop="64410" i_length="712"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="64409" e_stop="64365" e_length="45"/>
          </exon>
          <intron i_serial="6" don_prob="0.977" acc_prob="0.999">
            <gDNA_intron_boundary i_start="64364" i_stop="64278" i_length="87"/>
          </intron>
          <exon e_serial="7" e_score="0.996">
            <gDNA_exon_boundary e_start="64277" e_stop="64009" e_length="269"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68004" stop="67996"/>
              <exon start="67824" stop="67755"/>
              <exon start="67136" stop="67042"/>
              <exon start="65422" stop="65306"/>
              <exon start="65198" stop="65122"/>
              <exon start="64409" stop="64365"/>
              <exon start="64277" stop="64009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347779" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGGAAGAG : GTGATGGAAAAGCTTGTGGACATTGTCCACTTCCTCCATTTGGAGATCCATGCTGCATTTGGAAACTCTG : ATGGAGACCGTCCAATAAAAAACAACCATCAGAGATTAGGATCTGCTGGTCTTGCATTACATTATGCAAATATCATAACTCAGATTGATACGCTT : GTCACGCGATCAGGTTCGGTGCCCCCAAATACAAGAGATGCTTTATACCAAGGGTTGCCACCAAGCATTAAGTCAGCTTTGCGATTCAAATTACAATCCTTCCAGCTCAAGGAAGAG : TTAACTGTGCAACAAATCAAGGCTGAAATGGAGAAAACGCTGCAGTGGCTTGTTCCCATGGCAACCAACACAACCAA : GGCCCACCATGGCTTTGGATGGGTTGGAGAATGGGCAAATACAGG : GAAACCTGCTGGCCAGACTGATCTACTTCGAATTGAGACACTATATCATGCTGATAAGGAGAAAACCGAAGCTTATATTCTTGAACTGGTGGTGTGGCTTCACTATCTTGTCACTCAGTCGAGAAATTCTACAAATGGCGGAATCAGATCTCCTGTAAAATCTCCATCTTGTTACCCTAATCAAAAGATGAATCAGTTAACACACAAGCCAAGTTCTCCATCTTCCACATTAACAGTTGAAGACCAAGAGATGCTTCGGGATGTAAGCA</gDNA_template>
            <first_frame> L  E  E  :  V  M  E  K  L  V  D  I  V  H  F  L  H  L  E  I  H  A  A  F  G  N  S   : D  G  D  R  P  I  K  N  N  H  Q  R  L  G  S  A  G  L  A  L  H  Y  A  N  I  I  T  Q  I  D  T  L  :  V  T  R  S  G  S  V  P  P  N  T  R  D  A  L  Y  Q  G  L  P  P  S  I  K  S  A  L  R  F  K  L  Q  S  F  Q  L  K  E  E  :  L  T  V  Q  Q  I  K  A  E  M  E  K  T  L  Q  W  L  V  P  M  A  T  N  T  T  K :   A  H  H  G  F  G  W  V  G  E  W  A  N  T  G :   K  P  A  G  Q  T  D  L  L  R  I  E  T  L  Y  H  A  D  K  E  K  T  E  A  Y  I  L  E  L  V  V  W  L  H  Y  L  V  T  Q  S  R  N  S  T  N  G  G  I  R  S  P  V  K  S  P  S  C  Y  P  N  Q  K  M  N  Q  L  T  H  K  P  S  S  P  S  S  T  L  T  V  E  D  Q  E  M  L  R  D  V  S  </first_frame>
            <second_frame>  W  K  R :   *  W  K  S  L  W  T  L  S  T  S  S  I  W  R  S  M  L  H  L  E  T  L  :  M  E  T  V  Q  *  K  T  T  I  R  D  *  D  L  L  V  L  H  Y  I  M  Q  I  S  *  L  R  L  I  R  L :   S  R  D  Q  V  R  C  P  Q  I  Q  E  M  L  Y  T  K  G  C  H  Q  A  L  S  Q  L  C  D  S  N  Y  N  P  S  S  S  R  K  S :   *  L  C  N  K  S  R  L  K  W  R  K  R  C  S  G  L  F  P  W  Q  P  T  Q  P   : R  P  T  M  A  L  D  G  L  E  N  G  Q  I  Q   : G  N  L  L  A  R  L  I  Y  F  E  L  R  H  Y  I  M  L  I  R  R  K  P  K  L  I  F  L  N  W  W  C  G  F  T  I  L  S  L  S  R  E  I  L  Q  M  A  E  S  D  L  L  *  N  L  H  L  V  T  L  I  K  R  *  I  S  *  H  T  S  Q  V  L  H  L  P  H  *  Q  L  K  T  K  R  C  F  G  M  *  A </second_frame>
            <third_frame>   G  R   : G  D  G  K  A  C  G  H  C  P  L  P  P  F  G  D  P  C  C  I  W  K  L  * :   W  R  P  S  N  K  K  Q  P  S  E  I  R  I  C  W  S  C  I  T  L  C  K  Y  H  N  S  D  *  Y  A   : C  H  A  I  R  F  G  A  P  K  Y  K  R  C  F  I  P  R  V  A  T  K  H  *  V  S  F  A  I  Q  I  T  I  L  P  A  Q  G  R   : V  N  C  A  T  N  Q  G  *  N  G  E  N  A  A  V  A  C  S  H  G  N  Q  H  N  Q  :  G  P  P  W  L  W  M  G  W  R  M  G  K  Y  R  :  E  T  C  W  P  D  *  S  T  S  N  *  D  T  I  S  C  *  *  G  E  N  R  S  L  Y  S  *  T  G  G  V  A  S  L  S  C  H  S  V  E  K  F  Y  K  W  R  N  Q  I  S  C  K  I  S  I  L  L  P  *  S  K  D  E  S  V  N  T  Q  A  K  F  S  I  F  H  I  N  S  *  R  P  R  D  A  S  G  C  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68004" stop="67996"/>
                    <exon start="67824" stop="67755"/>
                    <exon start="67136" stop="67042"/>
                    <exon start="65422" stop="65306"/>
                    <exon start="65198" stop="65122"/>
                    <exon start="64409" stop="64365"/>
                    <exon start="64277" stop="64010"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>681</number_coding_nucleotides>
                  <number_encoded_amino_acids>227</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LEEVMEKLVDIVHFLHLEIHAAFGNSDGDRPIKNNHQRLGSAGLALHYANIITQIDTLVTRSGSVPPNTRDALYQGLPPSIKSALRFKLQSFQLKEELTVQQIKAEMEKTLQWLVPMATNTTKAHHGFGWVGEWANTGKPAGQTDLLRIETLYHADKEKTEAYILELVVWLHYLVTQSRNSTNGGIRSPVKSPSCYPNQKMNQLTHKPSSPSSTLTVEDQEMLRDVS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="67019" e_stop="66368"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="67019" e_stop="66368" e_length="652"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67019" stop="66368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343044" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTATTAGAGAATCAGCACTTTTGACGCTATCATTTAATCTTTTGATTTCATTCATATCCTTGATGGAAATGTGGAATGAAGGTGATATCTTTTCCACCATTAAAGCTAAAATACTTTTTTTGTTTCTCGTCATAAATATGTCAAGCATTTATCTTCCTTGTAAATCATCATCTTATCCCAATAGATATGCTTTCATTCTTTGTATGTTTCATAAAGCTGTATGCTCTAATATCTATCAGTAATCACAATAAAAAATGGAGGTCTATCAATTGGACCAAAAACAAATGCTGCAAGAACTGCCACTAATGAAAATACTCAAATTGCCATTGTCTTTGTGAATTTCATATCATAATTAGAATTTTAAATCGATAGCTAGAACTCCAAGATCAGGTGTGAATTGTTCATGTGAAGATAGCAGTACTTTAAGGTTGTGATTTACTATAGAAGGCATTTGAAAAATCTTACTCTAAGTGCTTTCATGGTTTTCATCATCTCACTTACTGTTTAATATTGTATTTTTTTTAAGAACTCGAATCGTAAGTAGGTGGGTTTATTATATTAACTTAGGCTTTTTTTTCTTTTTGACTTAAATTTGATGTTTGACTTCATTTTTTTTTTTGGAAAAAAAAATAATGTAATATGTTACCCAAA</gDNA_template>
            <first_frame> I  I  R  E  S  A  L  L  T  L  S  F  N  L  L  I  S  F  I  S  L  M  E  M  W  N  E  G  D  I  F  S  T  I  K  A  K  I  L  F  L  F  L  V  I  N  M  S  S  I  Y  L  P  C  K  S  S  S  Y  P  N  R  Y  A  F  I  L  C  M  F  H  K  A  V  C  S  N  I  Y  Q  *  S  Q  *  K  M  E  V  Y  Q  L  D  Q  K  Q  M  L  Q  E  L  P  L  M  K  I  L  K  L  P  L  S  L  *  I  S  Y  H  N  *  N  F  K  S  I  A  R  T  P  R  S  G  V  N  C  S  C  E  D  S  S  T  L  R  L  *  F  T  I  E  G  I  *  K  I  L  L  *  V  L  S  W  F  S  S  S  H  L  L  F  N  I  V  F  F  L  R  T  R  I  V  S  R  W  V  Y  Y  I  N  L  G  F  F  F  F  L  T  *  I  *  C  L  T  S  F  F  F  L  E  K  K  I  M  *  Y  V  T  Q  </first_frame>
            <second_frame>  L  L  E  N  Q  H  F  *  R  Y  H  L  I  F  *  F  H  S  Y  P  *  W  K  C  G  M  K  V  I  S  F  P  P  L  K  L  K  Y  F  F  C  F  S  S  *  I  C  Q  A  F  I  F  L  V  N  H  H  L  I  P  I  D  M  L  S  F  F  V  C  F  I  K  L  Y  A  L  I  S  I  S  N  H  N  K  K  W  R  S  I  N  W  T  K  N  K  C  C  K  N  C  H  *  *  K  Y  S  N  C  H  C  L  C  E  F  H  I  I  I  R  I  L  N  R  *  L  E  L  Q  D  Q  V  *  I  V  H  V  K  I  A  V  L  *  G  C  D  L  L  *  K  A  F  E  K  S  Y  S  K  C  F  H  G  F  H  H  L  T  Y  C  L  I  L  Y  F  F  *  E  L  E  S  *  V  G  G  F  I  I  L  T  *  A  F  F  S  F  *  L  K  F  D  V  *  L  H  F  F  F  W  K  K  K  *  C  N  M  L  P  K </second_frame>
            <third_frame>   Y  *  R  I  S  T  F  D  A  I  I  *  S  F  D  F  I  H  I  L  D  G  N  V  E  *  R  *  Y  L  F  H  H  *  S  *  N  T  F  F  V  S  R  H  K  Y  V  K  H  L  S  S  L  *  I  I  I  L  S  Q  *  I  C  F  H  S  L  Y  V  S  *  S  C  M  L  *  Y  L  S  V  I  T  I  K  N  G  G  L  S  I  G  P  K  T  N  A  A  R  T  A  T  N  E  N  T  Q  I  A  I  V  F  V  N  F  I  S  *  L  E  F  *  I  D  S  *  N  S  K  I  R  C  E  L  F  M  *  R  *  Q  Y  F  K  V  V  I  Y  Y  R  R  H  L  K  N  L  T  L  S  A  F  M  V  F  I  I  S  L  T  V  *  Y  C  I  F  F  K  N  S  N  R  K  *  V  G  L  L  Y  *  L  R  L  F  F  L  F  D  L  N  L  M  F  D  F  I  F  F  F  G  K  K  N  N  V  I  C  Y  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67019" stop="66777"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIRESALLTLSFNLLISFISLMEMWNEGDIFSTIKAKILFLFLVINMSSIYLPCKSSSYPNRYAFILCMFHKAVCSNIYQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="80411" PGL_stop="72429"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80411" e_stop="79963"/>
            <exon e_start="78411" e_stop="78275"/>
            <exon e_start="77884" e_stop="77739"/>
            <exon e_start="75837" e_stop="75466"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.156" e_score="0.904"/>
          <exon-intron don_prob="0.984" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.950" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="80411" e_stop="79963" e_length="449"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.156">
            <gDNA_intron_boundary i_start="79962" i_stop="78412" i_length="1551"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78411" e_stop="78275" e_length="137"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.998">
            <gDNA_intron_boundary i_start="78274" i_stop="77885" i_length="390"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="77884" e_stop="77739" e_length="146"/>
          </exon>
          <intron i_serial="3" don_prob="0.970" acc_prob="0.950">
            <gDNA_intron_boundary i_start="77738" i_stop="75838" i_length="1901"/>
          </intron>
          <exon e_serial="4" e_score="0.994">
            <gDNA_exon_boundary e_start="75837" e_stop="75466" e_length="372"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80411" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80336" stop="79963"/>
              <exon start="78411" stop="78342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80324" stop="79963"/>
              <exon start="78411" stop="78295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80303" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77739"/>
              <exon start="75837" stop="75568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80299" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77739"/>
              <exon start="75837" stop="75466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80294" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80286" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77739"/>
              <exon start="75837" stop="75801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80266" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77739"/>
              <exon start="75837" stop="75521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80259" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77739"/>
              <exon start="75837" stop="75633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80253" stop="79963"/>
              <exon start="78411" stop="78293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E583385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80252" stop="79963"/>
              <exon start="78411" stop="78285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485702" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80252" stop="79963"/>
              <exon start="78411" stop="78295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80251" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77739"/>
              <exon start="75837" stop="75714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80247" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77739"/>
              <exon start="75837" stop="75466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80247" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77739"/>
              <exon start="75837" stop="75466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80247" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77739"/>
              <exon start="75837" stop="75466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80247" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80247" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80240" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80239" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80239" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80239" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80239" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80235" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77739"/>
              <exon start="75837" stop="75714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80231" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77739"/>
              <exon start="75837" stop="75661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80231" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77739"/>
              <exon start="75837" stop="75712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80196" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80109" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77739"/>
              <exon start="75837" stop="75714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80027" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77739"/>
              <exon start="75837" stop="75496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77859" stop="77739"/>
              <exon start="75837" stop="75499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75776" stop="75486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216678" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCGACCCGACCACAAAAAGATTTAGGAAGATCATATGGCCCAAAACCCTTCTGTGCCAGTATAATACCCTAGCATTTTGCCTGGACACAGCTTCAACAAAAATACTTTATTAGTACTAATAAATAAATATATACAGTTGAAACAAGCGAATCAAAACCCCAGATTCTCTCTTTTTGCTGCAGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTGGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCACCGATGCCAAAGCTGAAATCAGCCATTACAGGTGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGGGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGATTTGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGAT : CCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTCTGGATTTGTCAAG : GGTTATGCACTTATTGAATATGAAAACTTTGAAGAAGCAGAGAGAGCTATTAGTGAAATGGATGGGAATGAGCTGCTAACTCAGACTATACATGTTGATTGGGCATTCAGCAAAGGTCCTTTTAGAAGGAGAAATGTTAGGAGGAG : GTCACCTCGTAGTCATCGTTCTAGAAGTCCCAGGAGGAGATTCTAGTTCTATGCACACACCTATTTGCAAGGATTATGTCACTGACTTCTAGAGATCAGGCTCTATGAATTCCTGGTCTATGCTGTACGATTGTTCCTTTGCCAGTTTTTCTTTAATTTTCTGTTCCCTTAACTCTGCTCTAAGTGAATGTATCTCGAGCTTGCCTGGCCTTTGTGAAAATTTAGATTCCTTTTATGAATATTTCAGAACTTTCCGGTTATCTTTTGAATTGGTTATGTTGGAGGCGGCATTGTGAGTTGATTGTCATGTAACATTTGTGGGTAATTTGATGTGTTTCAGTAGTGTGTACTAGCGATTTACCTTTTGAGTAC</gDNA_template>
            <first_frame> P  T  R  P  Q  K  D  L  G  R  S  Y  G  P  K  P  F  C  A  S  I  I  P  *  H  F  A  W  T  Q  L  Q  Q  K  Y  F  I  S  T  N  K  *  I  Y  T  V  E  T  S  E  S  K  P  Q  I  L  S  F  C  C  S  G  E  N  G  E  P  G  G  G  C  G  F  R  A  R  G  R  R  S  D  G  R  R  R  *  R  F  I  T  *  G  T  D  A  K  A  E  I  S  H  Y  R  W  R  R  R  F  F  C  F  *  E  N  Q  R  T  G  F  P  *  R  D  C  *  G  *  K  E  C  S  P  F  C  S  I  *  F  T  *  L  R  R  W  P  W  T  *  T  I :   H  *  R  M  D  Y  F  S  H  W  S  Q  *  G  G  T  R  R  *  S  S  *  Y  I  W  *  V  R  G  D  Q  E  F  A  F  E  S  G  S  S  F  W  I  C  Q   : G  L  C  T  Y  *  I  *  K  L  *  R  S  R  E  S  Y  *  *  N  G  W  E  *  A  A  N  S  D  Y  T  C  *  L  G  I  Q  Q  R  S  F  *  K  E  K  C  *  E  E  :  V  T  S  *  S  S  F  *  K  S  Q  E  E  I  L  V  L  C  T  H  L  F  A  R  I  M  S  L  T  S  R  D  Q  A  L  *  I  P  G  L  C  C  T  I  V  P  L  P  V  F  L  *  F  S  V  P  L  T  L  L  *  V  N  V  S  R  A  C  L  A  F  V  K  I  *  I  P  F  M  N  I  S  E  L  S  G  Y  L  L  N  W  L  C  W  R  R  H  C  E  L  I  V  M  *  H  L  W  V  I  *  C  V  S  V  V  C  T  S  D  L  P  F  E  Y </first_frame>
            <second_frame>  R  P  D  H  K  K  I  *  E  D  H  M  A  Q  N  P  S  V  P  V  *  Y  P  S  I  L  P  G  H  S  F  N  K  N  T  L  L  V  L  I  N  K  Y  I  Q  L  K  Q  A  N  Q  N  P  R  F  S  L  F  A  A  A  A  K  M  A  N  P  E  E  A  V  D  F  E  P  E  E  D  D  L  M  D  E  D  V  D  A  S  S  P  R  A  P  M  P  K  L  K  S  A  I  T  G  G  G  G  G  S  S  A  S  K  K  I  K  G  R  G  F  R  E  E  T  A  E  A  E  R  N  A  R  L  S  A  R  F  D  S  L  D  S  E  G  G  P  G  P  E  R   : S  I  E  G  W  I  I  L  V  T  G  V  N  E  E  A  H  E  D  D  L  H  N  T  F  G  E  F  G  E  I  K  N  L  H  L  N  L  D  R  R  S  G  F  V  K  :  G  Y  A  L  I  E  Y  E  N  F  E  E  A  E  R  A  I  S  E  M  D  G  N  E  L  L  T  Q  T  I  H  V  D  W  A  F  S  K  G  P  F  R  R  R  N  V  R  R  R :   S  P  R  S  H  R  S  R  S  P  R  R  R  F  *  F  Y  A  H  T  Y  L  Q  G  L  C  H  *  L  L  E  I  R  L  Y  E  F  L  V  Y  A  V  R  L  F  L  C  Q  F  F  F  N  F  L  F  P  *  L  C  S  K  *  M  Y  L  E  L  A  W  P  L  *  K  F  R  F  L  L  *  I  F  Q  N  F  P  V  I  F  *  I  G  Y  V  G  G  G  I  V  S  *  L  S  C  N  I  C  G  *  F  D  V  F  Q  *  C  V  L  A  I  Y  L  L  S   </second_frame>
            <third_frame>   D  P  T  T  K  R  F  R  K  I  I  W  P  K  T  L  L  C  Q  Y  N  T  L  A  F  C  L  D  T  A  S  T  K  I  L  Y  *  Y  *  *  I  N  I  Y  S  *  N  K  R  I  K  T  P  D  S  L  F  L  L  Q  R  R  K  W  R  T  R  R  R  L  W  I  S  S  Q  R  K  T  I  *  W  T  K  T  L  T  L  H  H  L  G  H  R  C  Q  S  *  N  Q  P  L  Q  V  A  A  A  V  L  L  L  L  R  K  S  K  D  G  V  S  V  K  R  L  L  R  L  K  G  M  L  A  F  L  L  D  L  I  H  L  T  P  K  V  A  L  D  L  N  D  :  P  L  K  D  G  L  F  *  S  L  E  S  M  R  R  H  T  K  M  I  F  I  I  H  L  V  S  S  G  R  S  R  I  C  I  *  I  W  I  V  V  L  D  L  S  R :   V  M  H  L  L  N  M  K  T  L  K  K  Q  R  E  L  L  V  K  W  M  G  M  S  C  *  L  R  L  Y  M  L  I  G  H  S  A  K  V  L  L  E  G  E  M  L  G  G   : G  H  L  V  V  I  V  L  E  V  P  G  G  D  S  S  S  M  H  T  P  I  C  K  D  Y  V  T  D  F  *  R  S  G  S  M  N  S  W  S  M  L  Y  D  C  S  F  A  S  F  S  L  I  F  C  S  L  N  S  A  L  S  E  C  I  S  S  L  P  G  L  C  E  N  L  D  S  F  Y  E  Y  F  R  T  F  R  L  S  F  E  L  V  M  L  E  A  A  L  *  V  D  C  H  V  T  F  V  G  N  L  M  C  F  S  S  V  Y  *  R  F  T  F  *  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80347" stop="79963"/>
                    <exon start="78411" stop="78275"/>
                    <exon start="77884" stop="77739"/>
                    <exon start="75837" stop="75792"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>711</number_coding_nucleotides>
                  <number_encoded_amino_acids>237</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YPSILPGHSFNKNTLLVLINKYIQLKQANQNPRFSLFAAAAKMANPEEAVDFEPEEDDLMDEDVDASSPRAPMPKLKSAITGGGGGSSASKKIKGRGFREETAEAERNARLSARFDSLDSEGGPGPERSIEGWIILVTGVNEEAHEDDLHNTFGEFGEIKNLHLNLDRRSGFVKGYALIEYENFEEAERAISEMDGNELLTQTIHVDWAFSKGPFRRRNVRRRSPRSHRSRSPRRRF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75745" stop="75542"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSGSMNSWSMLYDCSFASFSLIFCSLNSALSECISSLPGLCENLDSFYEYFRTFRLSFELVMLEAAL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="80411" e_stop="79963"/>
            <exon e_start="78411" e_stop="78275"/>
            <exon e_start="77884" e_stop="77739"/>
            <exon e_start="75837" e_stop="75496"/>
            <exon e_start="73108" e_stop="73065"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.156" e_score="0.904"/>
          <exon-intron don_prob="0.984" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.659"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="80411" e_stop="79963" e_length="449"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.156">
            <gDNA_intron_boundary i_start="79962" i_stop="78412" i_length="1551"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78411" e_stop="78275" e_length="137"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.998">
            <gDNA_intron_boundary i_start="78274" i_stop="77885" i_length="390"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="77884" e_stop="77739" e_length="146"/>
          </exon>
          <intron i_serial="3" don_prob="0.970" acc_prob="0.950">
            <gDNA_intron_boundary i_start="77738" i_stop="75838" i_length="1901"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="75837" e_stop="75496" e_length="342"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="75495" i_stop="73109" i_length="2387"/>
          </intron>
          <exon e_serial="5" e_score="0.659">
            <gDNA_exon_boundary e_start="73108" e_stop="73065" e_length="44"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80411" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80336" stop="79963"/>
              <exon start="78411" stop="78342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80324" stop="79963"/>
              <exon start="78411" stop="78295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80303" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77739"/>
              <exon start="75837" stop="75568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80294" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80286" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77739"/>
              <exon start="75837" stop="75801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80266" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77739"/>
              <exon start="75837" stop="75521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80259" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77739"/>
              <exon start="75837" stop="75633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80253" stop="79963"/>
              <exon start="78411" stop="78293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E583385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80252" stop="79963"/>
              <exon start="78411" stop="78285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485702" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80252" stop="79963"/>
              <exon start="78411" stop="78295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80251" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77739"/>
              <exon start="75837" stop="75714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80247" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80247" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80240" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80239" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80239" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80239" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80239" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80235" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77739"/>
              <exon start="75837" stop="75714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80231" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77739"/>
              <exon start="75837" stop="75661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80231" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77739"/>
              <exon start="75837" stop="75712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80196" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80109" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77739"/>
              <exon start="75837" stop="75714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80027" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77739"/>
              <exon start="75837" stop="75496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77859" stop="77739"/>
              <exon start="75837" stop="75499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77792" stop="77739"/>
              <exon start="75837" stop="75496"/>
              <exon start="73108" stop="73065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77784" stop="77739"/>
              <exon start="75837" stop="75496"/>
              <exon start="73108" stop="73065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226461" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCGACCCGACCACAAAAAGATTTAGGAAGATCATATGGCCCAAAACCCTTCTGTGCCAGTATAATACCCTAGCATTTTGCCTGGACACAGCTTCAACAAAAATACTTTATTAGTACTAATAAATAAATATATACAGTTGAAACAAGCGAATCAAAACCCCAGATTCTCTCTTTTTGCTGCAGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTGGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCACCGATGCCAAAGCTGAAATCAGCCATTACAGGTGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGGGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGATTTGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGAT : CCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTCTGGATTTGTCAAG : GGTTATGCACTTATTGAATATGAAAACTTTGAAGAAGCAGAGAGAGCTATTAGTGAAATGGATGGGAATGAGCTGCTAACTCAGACTATACATGTTGATTGGGCATTCAGCAAAGGTCCTTTTAGAAGGAGAAATGTTAGGAGGAG : GTCACCTCGTAGTCATCGTTCTAGAAGTCCCAGGAGGAGATTCTAGTTCTATGCACACACCTATTTGCAAGGATTATGTCACTGACTTCTAGAGATCAGGCTCTATGAATTCCTGGTCTATGCTGTACGATTGTTCCTTTGCCAGTTTTTCTTTAATTTTCTGTTCCCTTAACTCTGCTCTAAGTGAATGTATCTCGAGCTTGCCTGGCCTTTGTGAAAATTTAGATTCCTTTTATGAATATTTCAGAACTTTCCGGTTATCTTTTGAATTGGTTATGTTGGAGGCGGCATTGTGAGTTGATTGTCATGTAACATTTGTGGGTAATTTGATGTGTTTCAGTA : AAATCAGATGAATAATTAAAAGGCAAACAAAGAGAAAAAAAAAC</gDNA_template>
            <first_frame> P  T  R  P  Q  K  D  L  G  R  S  Y  G  P  K  P  F  C  A  S  I  I  P  *  H  F  A  W  T  Q  L  Q  Q  K  Y  F  I  S  T  N  K  *  I  Y  T  V  E  T  S  E  S  K  P  Q  I  L  S  F  C  C  S  G  E  N  G  E  P  G  G  G  C  G  F  R  A  R  G  R  R  S  D  G  R  R  R  *  R  F  I  T  *  G  T  D  A  K  A  E  I  S  H  Y  R  W  R  R  R  F  F  C  F  *  E  N  Q  R  T  G  F  P  *  R  D  C  *  G  *  K  E  C  S  P  F  C  S  I  *  F  T  *  L  R  R  W  P  W  T  *  T  I :   H  *  R  M  D  Y  F  S  H  W  S  Q  *  G  G  T  R  R  *  S  S  *  Y  I  W  *  V  R  G  D  Q  E  F  A  F  E  S  G  S  S  F  W  I  C  Q   : G  L  C  T  Y  *  I  *  K  L  *  R  S  R  E  S  Y  *  *  N  G  W  E  *  A  A  N  S  D  Y  T  C  *  L  G  I  Q  Q  R  S  F  *  K  E  K  C  *  E  E  :  V  T  S  *  S  S  F  *  K  S  Q  E  E  I  L  V  L  C  T  H  L  F  A  R  I  M  S  L  T  S  R  D  Q  A  L  *  I  P  G  L  C  C  T  I  V  P  L  P  V  F  L  *  F  S  V  P  L  T  L  L  *  V  N  V  S  R  A  C  L  A  F  V  K  I  *  I  P  F  M  N  I  S  E  L  S  G  Y  L  L  N  W  L  C  W  R  R  H  C  E  L  I  V  M  *  H  L  W  V  I  *  C  V  S  V  :  K  S  D  E  *  L  K  G  K  Q  R  E  K  K   </first_frame>
            <second_frame>  R  P  D  H  K  K  I  *  E  D  H  M  A  Q  N  P  S  V  P  V  *  Y  P  S  I  L  P  G  H  S  F  N  K  N  T  L  L  V  L  I  N  K  Y  I  Q  L  K  Q  A  N  Q  N  P  R  F  S  L  F  A  A  A  A  K  M  A  N  P  E  E  A  V  D  F  E  P  E  E  D  D  L  M  D  E  D  V  D  A  S  S  P  R  A  P  M  P  K  L  K  S  A  I  T  G  G  G  G  G  S  S  A  S  K  K  I  K  G  R  G  F  R  E  E  T  A  E  A  E  R  N  A  R  L  S  A  R  F  D  S  L  D  S  E  G  G  P  G  P  E  R   : S  I  E  G  W  I  I  L  V  T  G  V  N  E  E  A  H  E  D  D  L  H  N  T  F  G  E  F  G  E  I  K  N  L  H  L  N  L  D  R  R  S  G  F  V  K  :  G  Y  A  L  I  E  Y  E  N  F  E  E  A  E  R  A  I  S  E  M  D  G  N  E  L  L  T  Q  T  I  H  V  D  W  A  F  S  K  G  P  F  R  R  R  N  V  R  R  R :   S  P  R  S  H  R  S  R  S  P  R  R  R  F  *  F  Y  A  H  T  Y  L  Q  G  L  C  H  *  L  L  E  I  R  L  Y  E  F  L  V  Y  A  V  R  L  F  L  C  Q  F  F  F  N  F  L  F  P  *  L  C  S  K  *  M  Y  L  E  L  A  W  P  L  *  K  F  R  F  L  L  *  I  F  Q  N  F  P  V  I  F  *  I  G  Y  V  G  G  G  I  V  S  *  L  S  C  N  I  C  G  *  F  D  V  F  Q  * :   N  Q  M  N  N  *  K  A  N  K  E  K  K  K  </second_frame>
            <third_frame>   D  P  T  T  K  R  F  R  K  I  I  W  P  K  T  L  L  C  Q  Y  N  T  L  A  F  C  L  D  T  A  S  T  K  I  L  Y  *  Y  *  *  I  N  I  Y  S  *  N  K  R  I  K  T  P  D  S  L  F  L  L  Q  R  R  K  W  R  T  R  R  R  L  W  I  S  S  Q  R  K  T  I  *  W  T  K  T  L  T  L  H  H  L  G  H  R  C  Q  S  *  N  Q  P  L  Q  V  A  A  A  V  L  L  L  L  R  K  S  K  D  G  V  S  V  K  R  L  L  R  L  K  G  M  L  A  F  L  L  D  L  I  H  L  T  P  K  V  A  L  D  L  N  D  :  P  L  K  D  G  L  F  *  S  L  E  S  M  R  R  H  T  K  M  I  F  I  I  H  L  V  S  S  G  R  S  R  I  C  I  *  I  W  I  V  V  L  D  L  S  R :   V  M  H  L  L  N  M  K  T  L  K  K  Q  R  E  L  L  V  K  W  M  G  M  S  C  *  L  R  L  Y  M  L  I  G  H  S  A  K  V  L  L  E  G  E  M  L  G  G   : G  H  L  V  V  I  V  L  E  V  P  G  G  D  S  S  S  M  H  T  P  I  C  K  D  Y  V  T  D  F  *  R  S  G  S  M  N  S  W  S  M  L  Y  D  C  S  F  A  S  F  S  L  I  F  C  S  L  N  S  A  L  S  E  C  I  S  S  L  P  G  L  C  E  N  L  D  S  F  Y  E  Y  F  R  T  F  R  L  S  F  E  L  V  M  L  E  A  A  L  *  V  D  C  H  V  T  F  V  G  N  L  M  C  F  S   : K  I  R  *  I  I  K  R  Q  T  K  R  K  K  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80347" stop="79963"/>
                    <exon start="78411" stop="78275"/>
                    <exon start="77884" stop="77739"/>
                    <exon start="75837" stop="75792"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>711</number_coding_nucleotides>
                  <number_encoded_amino_acids>237</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YPSILPGHSFNKNTLLVLINKYIQLKQANQNPRFSLFAAAAKMANPEEAVDFEPEEDDLMDEDVDASSPRAPMPKLKSAITGGGGGSSASKKIKGRGFREETAEAERNARLSARFDSLDSEGGPGPERSIEGWIILVTGVNEEAHEDDLHNTFGEFGEIKNLHLNLDRRSGFVKGYALIEYENFEEAERAISEMDGNELLTQTIHVDWAFSKGPFRRRNVRRRSPRSHRSRSPRRRF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75745" stop="75542"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSGSMNSWSMLYDCSFASFSLIFCSLNSALSECISSLPGLCENLDSFYEYFRTFRLSFELVMLEAAL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="80411" e_stop="79963"/>
            <exon e_start="78411" e_stop="78275"/>
            <exon e_start="77884" e_stop="77739"/>
            <exon e_start="75837" e_stop="75618"/>
            <exon e_start="73132" e_stop="73063"/>
            <exon e_start="72482" e_stop="72429"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.156" e_score="0.904"/>
          <exon-intron don_prob="0.984" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.700"/>
          <exon-only e_score="0.481"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="80411" e_stop="79963" e_length="449"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.156">
            <gDNA_intron_boundary i_start="79962" i_stop="78412" i_length="1551"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78411" e_stop="78275" e_length="137"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.998">
            <gDNA_intron_boundary i_start="78274" i_stop="77885" i_length="390"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="77884" e_stop="77739" e_length="146"/>
          </exon>
          <intron i_serial="3" don_prob="0.970" acc_prob="0.950">
            <gDNA_intron_boundary i_start="77738" i_stop="75838" i_length="1901"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="75837" e_stop="75618" e_length="220"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="75617" i_stop="73133" i_length="2485"/>
          </intron>
          <exon e_serial="5" e_score="0.700">
            <gDNA_exon_boundary e_start="73132" e_stop="73063" e_length="70"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="73062" i_stop="72483" i_length="580"/>
          </intron>
          <exon e_serial="6" e_score="0.481">
            <gDNA_exon_boundary e_start="72482" e_stop="72429" e_length="54"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80411" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80336" stop="79963"/>
              <exon start="78411" stop="78342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80324" stop="79963"/>
              <exon start="78411" stop="78295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80294" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80286" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77739"/>
              <exon start="75837" stop="75801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80259" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77739"/>
              <exon start="75837" stop="75633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80253" stop="79963"/>
              <exon start="78411" stop="78293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E583385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80252" stop="79963"/>
              <exon start="78411" stop="78285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485702" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80252" stop="79963"/>
              <exon start="78411" stop="78295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80251" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77739"/>
              <exon start="75837" stop="75714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80247" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80247" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80240" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80239" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80239" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80239" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80239" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80235" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77739"/>
              <exon start="75837" stop="75714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80231" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77739"/>
              <exon start="75837" stop="75661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80231" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77739"/>
              <exon start="75837" stop="75712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80196" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80109" stop="79963"/>
              <exon start="78411" stop="78275"/>
              <exon start="77884" stop="77739"/>
              <exon start="75837" stop="75714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78402" stop="78275"/>
              <exon start="77884" stop="77739"/>
              <exon start="75837" stop="75618"/>
              <exon start="73132" stop="73063"/>
              <exon start="72482" stop="72429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552364" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCGACCCGACCACAAAAAGATTTAGGAAGATCATATGGCCCAAAACCCTTCTGTGCCAGTATAATACCCTAGCATTTTGCCTGGACACAGCTTCAACAAAAATACTTTATTAGTACTAATAAATAAATATATACAGTTGAAACAAGCGAATCAAAACCCCAGATTCTCTCTTTTTGCTGCAGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTGGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCACCGATGCCAAAGCTGAAATCAGCCATTACAGGTGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGGGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGATTTGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGAT : CCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTCTGGATTTGTCAAG : GGTTATGCACTTATTGAATATGAAAACTTTGAAGAAGCAGAGAGAGCTATTAGTGAAATGGATGGGAATGAGCTGCTAACTCAGACTATACATGTTGATTGGGCATTCAGCAAAGGTCCTTTTAGAAGGAGAAATGTTAGGAGGAG : GTCACCTCGTAGTCATCGTTCTAGAAGTCCCAGGAGGAGATTCTAGTTCTATGCACACACCTATTTGCAAGGATTATGTCACTGACTTCTAGAGATCAGGCTCTATGAATTCCTGGTCTATGCTGTACGATTGTTCCTTTGCCAGTTTTTCTTTAATTTTCTGTTCCCTTAACTCTGCTCTAAGTGAATGTATCTCGAGCTTGCCTGGCCTTTGTGAAAA : AATAATTAATAAATAAAAAAAAAGAAATCAGATGAATAATTAAAAGGCAAACAAAGAGAAAAAAAAACAA : AACAAAAAAGAAGCAGAGGTAATGGCCCCCCTTGCCTATTCCCTCTTAAGCTCC</gDNA_template>
            <first_frame> P  T  R  P  Q  K  D  L  G  R  S  Y  G  P  K  P  F  C  A  S  I  I  P  *  H  F  A  W  T  Q  L  Q  Q  K  Y  F  I  S  T  N  K  *  I  Y  T  V  E  T  S  E  S  K  P  Q  I  L  S  F  C  C  S  G  E  N  G  E  P  G  G  G  C  G  F  R  A  R  G  R  R  S  D  G  R  R  R  *  R  F  I  T  *  G  T  D  A  K  A  E  I  S  H  Y  R  W  R  R  R  F  F  C  F  *  E  N  Q  R  T  G  F  P  *  R  D  C  *  G  *  K  E  C  S  P  F  C  S  I  *  F  T  *  L  R  R  W  P  W  T  *  T  I :   H  *  R  M  D  Y  F  S  H  W  S  Q  *  G  G  T  R  R  *  S  S  *  Y  I  W  *  V  R  G  D  Q  E  F  A  F  E  S  G  S  S  F  W  I  C  Q   : G  L  C  T  Y  *  I  *  K  L  *  R  S  R  E  S  Y  *  *  N  G  W  E  *  A  A  N  S  D  Y  T  C  *  L  G  I  Q  Q  R  S  F  *  K  E  K  C  *  E  E  :  V  T  S  *  S  S  F  *  K  S  Q  E  E  I  L  V  L  C  T  H  L  F  A  R  I  M  S  L  T  S  R  D  Q  A  L  *  I  P  G  L  C  C  T  I  V  P  L  P  V  F  L  *  F  S  V  P  L  T  L  L  *  V  N  V  S  R  A  C  L  A  F  V  K   : K  *  L  I  N  K  K  K  E  I  R  *  I  I  K  R  Q  T  K  R  K  K  N  K :   T  K  K  K  Q  R  *  W  P  P  L  P  I  P  S  *  A   </first_frame>
            <second_frame>  R  P  D  H  K  K  I  *  E  D  H  M  A  Q  N  P  S  V  P  V  *  Y  P  S  I  L  P  G  H  S  F  N  K  N  T  L  L  V  L  I  N  K  Y  I  Q  L  K  Q  A  N  Q  N  P  R  F  S  L  F  A  A  A  A  K  M  A  N  P  E  E  A  V  D  F  E  P  E  E  D  D  L  M  D  E  D  V  D  A  S  S  P  R  A  P  M  P  K  L  K  S  A  I  T  G  G  G  G  G  S  S  A  S  K  K  I  K  G  R  G  F  R  E  E  T  A  E  A  E  R  N  A  R  L  S  A  R  F  D  S  L  D  S  E  G  G  P  G  P  E  R   : S  I  E  G  W  I  I  L  V  T  G  V  N  E  E  A  H  E  D  D  L  H  N  T  F  G  E  F  G  E  I  K  N  L  H  L  N  L  D  R  R  S  G  F  V  K  :  G  Y  A  L  I  E  Y  E  N  F  E  E  A  E  R  A  I  S  E  M  D  G  N  E  L  L  T  Q  T  I  H  V  D  W  A  F  S  K  G  P  F  R  R  R  N  V  R  R  R :   S  P  R  S  H  R  S  R  S  P  R  R  R  F  *  F  Y  A  H  T  Y  L  Q  G  L  C  H  *  L  L  E  I  R  L  Y  E  F  L  V  Y  A  V  R  L  F  L  C  Q  F  F  F  N  F  L  F  P  *  L  C  S  K  *  M  Y  L  E  L  A  W  P  L  *  K  :  N  N  *  *  I  K  K  K  K  S  D  E  *  L  K  G  K  Q  R  E  K  K  T   : K  Q  K  R  S  R  G  N  G  P  P  C  L  F  P  L  K  L  </second_frame>
            <third_frame>   D  P  T  T  K  R  F  R  K  I  I  W  P  K  T  L  L  C  Q  Y  N  T  L  A  F  C  L  D  T  A  S  T  K  I  L  Y  *  Y  *  *  I  N  I  Y  S  *  N  K  R  I  K  T  P  D  S  L  F  L  L  Q  R  R  K  W  R  T  R  R  R  L  W  I  S  S  Q  R  K  T  I  *  W  T  K  T  L  T  L  H  H  L  G  H  R  C  Q  S  *  N  Q  P  L  Q  V  A  A  A  V  L  L  L  L  R  K  S  K  D  G  V  S  V  K  R  L  L  R  L  K  G  M  L  A  F  L  L  D  L  I  H  L  T  P  K  V  A  L  D  L  N  D  :  P  L  K  D  G  L  F  *  S  L  E  S  M  R  R  H  T  K  M  I  F  I  I  H  L  V  S  S  G  R  S  R  I  C  I  *  I  W  I  V  V  L  D  L  S  R :   V  M  H  L  L  N  M  K  T  L  K  K  Q  R  E  L  L  V  K  W  M  G  M  S  C  *  L  R  L  Y  M  L  I  G  H  S  A  K  V  L  L  E  G  E  M  L  G  G   : G  H  L  V  V  I  V  L  E  V  P  G  G  D  S  S  S  M  H  T  P  I  C  K  D  Y  V  T  D  F  *  R  S  G  S  M  N  S  W  S  M  L  Y  D  C  S  F  A  S  F  S  L  I  F  C  S  L  N  S  A  L  S  E  C  I  S  S  L  P  G  L  C  E  K :   I  I  N  K  *  K  K  R  N  Q  M  N  N  *  K  A  N  K  E  K  K  K  Q  :  N  K  K  E  A  E  V  M  A  P  L  A  Y  S  L  L  S  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80347" stop="79963"/>
                    <exon start="78411" stop="78275"/>
                    <exon start="77884" stop="77739"/>
                    <exon start="75837" stop="75792"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>711</number_coding_nucleotides>
                  <number_encoded_amino_acids>237</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YPSILPGHSFNKNTLLVLINKYIQLKQANQNPRFSLFAAAAKMANPEEAVDFEPEEDDLMDEDVDASSPRAPMPKLKSAITGGGGGSSASKKIKGRGFREETAEAERNARLSARFDSLDSEGGPGPERSIEGWIILVTGVNEEAHEDDLHNTFGEFGEIKNLHLNLDRRSGFVKGYALIEYENFEEAERAISEMDGNELLTQTIHVDWAFSKGPFRRRNVRRRSPRSHRSRSPRRRF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="80336" e_stop="79963"/>
            <exon e_start="78411" e_stop="77739"/>
            <exon e_start="75837" e_stop="75496"/>
            <exon e_start="73108" e_stop="73065"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.156" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.950" e_score="0.909"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.659"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="80336" e_stop="79963" e_length="374"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.156">
            <gDNA_intron_boundary i_start="79962" i_stop="78412" i_length="1551"/>
          </intron>
          <exon e_serial="2" e_score="0.909">
            <gDNA_exon_boundary e_start="78411" e_stop="77739" e_length="673"/>
          </exon>
          <intron i_serial="2" don_prob="0.970" acc_prob="0.950">
            <gDNA_intron_boundary i_start="77738" i_stop="75838" i_length="1901"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="75837" e_stop="75496" e_length="342"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="75495" i_stop="73109" i_length="2387"/>
          </intron>
          <exon e_serial="4" e_score="0.659">
            <gDNA_exon_boundary e_start="73108" e_stop="73065" e_length="44"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80336" stop="79963"/>
              <exon start="78411" stop="78342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80324" stop="79963"/>
              <exon start="78411" stop="78295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80253" stop="79963"/>
              <exon start="78411" stop="78293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E583385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80252" stop="79963"/>
              <exon start="78411" stop="78285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485702" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80252" stop="79963"/>
              <exon start="78411" stop="78295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78411" stop="77750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77859" stop="77739"/>
              <exon start="75837" stop="75499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77792" stop="77739"/>
              <exon start="75837" stop="75496"/>
              <exon start="73108" stop="73065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77784" stop="77739"/>
              <exon start="75837" stop="75496"/>
              <exon start="73108" stop="73065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226461" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGCCTGGACACAGCTTCAACAAAAATACTTTATTAGTACTAATAAATAAATATATACAGTTGAAACAAGCGAATCAAAACCCCAGATTCTCTCTTTTTGCTGCAGCGGCGAAAATGGCGAACCCGGAGGAGGCTGTGGATTTCGAGCCAGAGGAAGACGATCTGATGGACGAAGACGTTGACGCTTCATCACCTAGGGCACCGATGCCAAAGCTGAAATCAGCCATTACAGGTGGCGGCGGCGGTTCTTCTGCTTCTAAGAAAATCAAAGGACGGGGTTTCCGTGAAGAGACTGCTGAGGCTGAAAGGAATGCTCGCCTTTCTGCTCGATTTGATTCACTTGACTCCGAAGGTGGCCCTGGACCTGAACGAT : CCATTGAAGGATGGATTATTTTAGTCACTGGAGTCAATGAGGAGGCACACGAAGATGATCTTCATAATACATTTGGTGAGTTCGGGGAGATCAAGAATTTGCATTTGAATCTGGATCGTCGTTCTGGATTTGTCAAGGTGAACTGACTCTTTCTTTCTCGGAATGTTTAGCTGCTTGCCTGCTTCTTTGGGTTTTGGGTGTTGTACATATGATGCTATATGAATTGCATCCCCATTGTATGCTTTAATCTAATAAACTTTCCTATCAAAAGATTTTGGATGATGACAAAATTCTTTTGATCAAGAAAAATTTGTTGAAGTTTATAAGTGACAGACATTCCTTCTTCCATATAACTATGTAAGAGCATTTCCTTGAATGAATCTGTAATGGAGTAAAATGGAATAAAATAGGATCAATGCTATGTTAATTATGAAGGATTCTAGATAGATACTTTTCTTTGTTTTAAGTTTCAACTTTTGTCGTAGTTTGGAGTGGTATAGTTTTTATACAGTTTTCCATTTTGACAGGGTTATGCACTTATTGAATATGAAAACTTTGAAGAAGCAGAGAGAGCTATTAGTGAAATGGATGGGAATGAGCTGCTAACTCAGACTATACATGTTGATTGGGCATTCAGCAAAGGTCCTTTTAGAAGGAGAAATGTTAGGAGGAG : GTCACCTCGTAGTCATCGTTCTAGAAGTCCCAGGAGGAGATTCTAGTTCTATGCACACACCTATTTGCAAGGATTATGTCACTGACTTCTAGAGATCAGGCTCTATGAATTCCTGGTCTATGCTGTACGATTGTTCCTTTGCCAGTTTTTCTTTAATTTTCTGTTCCCTTAACTCTGCTCTAAGTGAATGTATCTCGAGCTTGCCTGGCCTTTGTGAAAATTTAGATTCCTTTTATGAATATTTCAGAACTTTCCGGTTATCTTTTGAATTGGTTATGTTGGAGGCGGCATTGTGAGTTGATTGTCATGTAACATTTGTGGGTAATTTGATGTGTTTCAGTA : AAATCAGATGAATAATTAAAAGGCAAACAAAGAGAAAAAAAAAC</gDNA_template>
            <first_frame> F  A  W  T  Q  L  Q  Q  K  Y  F  I  S  T  N  K  *  I  Y  T  V  E  T  S  E  S  K  P  Q  I  L  S  F  C  C  S  G  E  N  G  E  P  G  G  G  C  G  F  R  A  R  G  R  R  S  D  G  R  R  R  *  R  F  I  T  *  G  T  D  A  K  A  E  I  S  H  Y  R  W  R  R  R  F  F  C  F  *  E  N  Q  R  T  G  F  P  *  R  D  C  *  G  *  K  E  C  S  P  F  C  S  I  *  F  T  *  L  R  R  W  P  W  T  *  T  I :   H  *  R  M  D  Y  F  S  H  W  S  Q  *  G  G  T  R  R  *  S  S  *  Y  I  W  *  V  R  G  D  Q  E  F  A  F  E  S  G  S  S  F  W  I  C  Q  G  E  L  T  L  S  F  S  E  C  L  A  A  C  L  L  L  W  V  L  G  V  V  H  M  M  L  Y  E  L  H  P  H  C  M  L  *  S  N  K  L  S  Y  Q  K  I  L  D  D  D  K  I  L  L  I  K  K  N  L  L  K  F  I  S  D  R  H  S  F  F  H  I  T  M  *  E  H  F  L  E  *  I  C  N  G  V  K  W  N  K  I  G  S  M  L  C  *  L  *  R  I  L  D  R  Y  F  S  L  F  *  V  S  T  F  V  V  V  W  S  G  I  V  F  I  Q  F  S  I  L  T  G  L  C  T  Y  *  I  *  K  L  *  R  S  R  E  S  Y  *  *  N  G  W  E  *  A  A  N  S  D  Y  T  C  *  L  G  I  Q  Q  R  S  F  *  K  E  K  C  *  E  E  :  V  T  S  *  S  S  F  *  K  S  Q  E  E  I  L  V  L  C  T  H  L  F  A  R  I  M  S  L  T  S  R  D  Q  A  L  *  I  P  G  L  C  C  T  I  V  P  L  P  V  F  L  *  F  S  V  P  L  T  L  L  *  V  N  V  S  R  A  C  L  A  F  V  K  I  *  I  P  F  M  N  I  S  E  L  S  G  Y  L  L  N  W  L  C  W  R  R  H  C  E  L  I  V  M  *  H  L  W  V  I  *  C  V  S  V  :  K  S  D  E  *  L  K  G  K  Q  R  E  K  K   </first_frame>
            <second_frame>  L  P  G  H  S  F  N  K  N  T  L  L  V  L  I  N  K  Y  I  Q  L  K  Q  A  N  Q  N  P  R  F  S  L  F  A  A  A  A  K  M  A  N  P  E  E  A  V  D  F  E  P  E  E  D  D  L  M  D  E  D  V  D  A  S  S  P  R  A  P  M  P  K  L  K  S  A  I  T  G  G  G  G  G  S  S  A  S  K  K  I  K  G  R  G  F  R  E  E  T  A  E  A  E  R  N  A  R  L  S  A  R  F  D  S  L  D  S  E  G  G  P  G  P  E  R   : S  I  E  G  W  I  I  L  V  T  G  V  N  E  E  A  H  E  D  D  L  H  N  T  F  G  E  F  G  E  I  K  N  L  H  L  N  L  D  R  R  S  G  F  V  K  V  N  *  L  F  L  S  R  N  V  *  L  L  A  C  F  F  G  F  W  V  L  Y  I  *  C  Y  M  N  C  I  P  I  V  C  F  N  L  I  N  F  P  I  K  R  F  W  M  M  T  K  F  F  *  S  R  K  I  C  *  S  L  *  V  T  D  I  P  S  S  I  *  L  C  K  S  I  S  L  N  E  S  V  M  E  *  N  G  I  K  *  D  Q  C  Y  V  N  Y  E  G  F  *  I  D  T  F  L  C  F  K  F  Q  L  L  S  *  F  G  V  V  *  F  L  Y  S  F  P  F  *  Q  G  Y  A  L  I  E  Y  E  N  F  E  E  A  E  R  A  I  S  E  M  D  G  N  E  L  L  T  Q  T  I  H  V  D  W  A  F  S  K  G  P  F  R  R  R  N  V  R  R  R :   S  P  R  S  H  R  S  R  S  P  R  R  R  F  *  F  Y  A  H  T  Y  L  Q  G  L  C  H  *  L  L  E  I  R  L  Y  E  F  L  V  Y  A  V  R  L  F  L  C  Q  F  F  F  N  F  L  F  P  *  L  C  S  K  *  M  Y  L  E  L  A  W  P  L  *  K  F  R  F  L  L  *  I  F  Q  N  F  P  V  I  F  *  I  G  Y  V  G  G  G  I  V  S  *  L  S  C  N  I  C  G  *  F  D  V  F  Q  * :   N  Q  M  N  N  *  K  A  N  K  E  K  K  K  </second_frame>
            <third_frame>   C  L  D  T  A  S  T  K  I  L  Y  *  Y  *  *  I  N  I  Y  S  *  N  K  R  I  K  T  P  D  S  L  F  L  L  Q  R  R  K  W  R  T  R  R  R  L  W  I  S  S  Q  R  K  T  I  *  W  T  K  T  L  T  L  H  H  L  G  H  R  C  Q  S  *  N  Q  P  L  Q  V  A  A  A  V  L  L  L  L  R  K  S  K  D  G  V  S  V  K  R  L  L  R  L  K  G  M  L  A  F  L  L  D  L  I  H  L  T  P  K  V  A  L  D  L  N  D  :  P  L  K  D  G  L  F  *  S  L  E  S  M  R  R  H  T  K  M  I  F  I  I  H  L  V  S  S  G  R  S  R  I  C  I  *  I  W  I  V  V  L  D  L  S  R  *  T  D  S  F  F  L  G  M  F  S  C  L  P  A  S  L  G  F  G  C  C  T  Y  D  A  I  *  I  A  S  P  L  Y  A  L  I  *  *  T  F  L  S  K  D  F  G  *  *  Q  N  S  F  D  Q  E  K  F  V  E  V  Y  K  *  Q  T  F  L  L  P  Y  N  Y  V  R  A  F  P  *  M  N  L  *  W  S  K  M  E  *  N  R  I  N  A  M  L  I  M  K  D  S  R  *  I  L  F  F  V  L  S  F  N  F  C  R  S  L  E  W  Y  S  F  Y  T  V  F  H  F  D  R  V  M  H  L  L  N  M  K  T  L  K  K  Q  R  E  L  L  V  K  W  M  G  M  S  C  *  L  R  L  Y  M  L  I  G  H  S  A  K  V  L  L  E  G  E  M  L  G  G   : G  H  L  V  V  I  V  L  E  V  P  G  G  D  S  S  S  M  H  T  P  I  C  K  D  Y  V  T  D  F  *  R  S  G  S  M  N  S  W  S  M  L  Y  D  C  S  F  A  S  F  S  L  I  F  C  S  L  N  S  A  L  S  E  C  I  S  S  L  P  G  L  C  E  N  L  D  S  F  Y  E  Y  F  R  T  F  R  L  S  F  E  L  V  M  L  E  A  A  L  *  V  D  C  H  V  T  F  V  G  N  L  M  C  F  S   : K  I  R  *  I  I  K  R  Q  T  K  R  K  K  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80335" stop="79963"/>
                    <exon start="78411" stop="78266"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>516</number_coding_nucleotides>
                  <number_encoded_amino_acids>172</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPGHSFNKNTLLVLINKYIQLKQANQNPRFSLFAAAAKMANPEEAVDFEPEEDDLMDEDVDASSPRAPMPKLKSAITGGGGGSSASKKIKGRGFREETAEAERNARLSARFDSLDSEGGPGPERSIEGWIILVTGVNEEAHEDDLHNTFGEFGEIKNLHLNLDRRSGFVKVN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75745" stop="75542"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSGSMNSWSMLYDCSFASFSLIFCSLNSALSECISSLPGLCENLDSFYEYFRTFRLSFELVMLEAAL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="4" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77887" stop="77739"/>
                    <exon start="75837" stop="75792"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGYALIEYENFEEAERAISEMDGNELLTQTIHVDWAFSKGPFRRRNVRRRSPRSHRSRSPRRRF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="89765" PGL_stop="81075"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89763" e_stop="89483"/>
            <exon e_start="86605" e_stop="86509"/>
            <exon e_start="86416" e_stop="86352"/>
            <exon e_start="86222" e_stop="86088"/>
            <exon e_start="84232" e_stop="84098"/>
            <exon e_start="82775" e_stop="82627"/>
            <exon e_start="82533" e_stop="82392"/>
            <exon e_start="82059" e_stop="81973"/>
            <exon e_start="81897" e_stop="81610"/>
            <exon e_start="81373" e_stop="81348"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.637" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.829" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.834" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.857" acc_prob="0.116" e_score="1.000"/>
          <exon-intron don_prob="0.914" acc_prob="0.910" e_score="1.000"/>
          <exon-intron don_prob="0.915" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.843" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.545" e_score="1.000"/>
          <exon-only e_score="0.615"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="89763" e_stop="89483" e_length="281"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.637">
            <gDNA_intron_boundary i_start="89482" i_stop="86606" i_length="2877"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86605" e_stop="86509" e_length="97"/>
          </exon>
          <intron i_serial="2" don_prob="0.966" acc_prob="0.829">
            <gDNA_intron_boundary i_start="86508" i_stop="86417" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="86416" e_stop="86352" e_length="65"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.986">
            <gDNA_intron_boundary i_start="86351" i_stop="86223" i_length="129"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="86222" e_stop="86088" e_length="135"/>
          </exon>
          <intron i_serial="4" don_prob="0.834" acc_prob="0.993">
            <gDNA_intron_boundary i_start="86087" i_stop="84233" i_length="1855"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="84232" e_stop="84098" e_length="135"/>
          </exon>
          <intron i_serial="5" don_prob="0.857" acc_prob="0.116">
            <gDNA_intron_boundary i_start="84097" i_stop="82776" i_length="1322"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="82775" e_stop="82627" e_length="149"/>
          </exon>
          <intron i_serial="6" don_prob="0.914" acc_prob="0.910">
            <gDNA_intron_boundary i_start="82626" i_stop="82534" i_length="93"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="82533" e_stop="82392" e_length="142"/>
          </exon>
          <intron i_serial="7" don_prob="0.915" acc_prob="0.987">
            <gDNA_intron_boundary i_start="82391" i_stop="82060" i_length="332"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="82059" e_stop="81973" e_length="87"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="0.843">
            <gDNA_intron_boundary i_start="81972" i_stop="81898" i_length="75"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="81897" e_stop="81610" e_length="288"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.545">
            <gDNA_intron_boundary i_start="81609" i_stop="81374" i_length="236"/>
          </intron>
          <exon e_serial="10" e_score="0.615">
            <gDNA_exon_boundary e_start="81373" e_stop="81348" e_length="26"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89763" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89763" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89756" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84098"/>
              <exon start="82775" stop="82627"/>
              <exon start="82533" stop="82392"/>
              <exon start="82059" stop="81973"/>
              <exon start="81897" stop="81610"/>
              <exon start="81373" stop="81348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89754" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89747" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89746" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84098"/>
              <exon start="82775" stop="82674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89744" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216892" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89741" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84098"/>
              <exon start="82775" stop="82679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89740" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89735" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84098"/>
              <exon start="82775" stop="82680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89732" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89725" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84098"/>
              <exon start="82775" stop="82732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89723" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89721" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89715" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89713" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84098"/>
              <exon start="82775" stop="82683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89701" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89700" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89658" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86556" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86140" stop="86088"/>
              <exon start="84232" stop="84098"/>
              <exon start="82775" stop="82627"/>
              <exon start="82533" stop="82424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84162" stop="84098"/>
              <exon start="82775" stop="82627"/>
              <exon start="82533" stop="82392"/>
              <exon start="82059" stop="81973"/>
              <exon start="81897" stop="81642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538299" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAGTGCGTACAAAGAAAGCAGTGAAGTGAACATCCTACCACGGGGTGCGGACTGTCCATTCGGAATCGGAGGCAGATATCAGCGATGGCCACCGCCGGTAAACTCGTGTCGTCGTCGTCGTCGTCACCCAAGCCTTTCGATTTCTCCGACGATTCAGTTCCTAAGAGAGTCGTTCTGTCGAGTGATCAGCAGCGTTATTGCTTGGAAGTACTCAAAGTCTTCAAGGACAAGAGGTTTTCTGCTCCCGAAAAAATCCGCCAAGAGTTCATGACGTTGCAG : GCAACTAGGATGAGAGCTTCAGAAATGAAAAGTAGATGCTCAATGGCTTTGAACAGCGCAAACATTAGCAAAAATCGATACACTGATGTTCTGCCAT : TTGACAATAACAGGGTTGTTTTGGACCCACCAGCTAGAGGATATATAAATGCAAGCTTCATTAAG : ATATCTGAAGACGTGTCTCAGTTTATTGCAACACAAGGTCCTCTACAACACACTTTTGAAGACTTCTGGGAAATGATAATCCAGCATCGCTGTCCTGTGATTGTGATGCTTACACAATTGTTTGACAACTACAAG : ATTGTCAAGTGTGGGGATTATTTTCAGGCAGATGGTGGTCCCAGAAGATTTGGCAATATATGTATTGTTACGAAGTGGATAAAGACGACTCAGACTTCATTGATTTTGCGATGTCTGGAGGTGAACTATATTGAG : TCAACAGAACCACCTTTGTGTGTTTTACACATTCAATATCCCGACTGGCCTGACCATGGAGTTCCAAAGGACACTCTTGCTGTTCGTGAAATACTGAAACAAACATTTAGTGTCCCACCCAGTCTTGGACCAATTGTGGTGCACTGCAG : TGCAGGTATTGGTAGGACTGGAACATACTGTGCAATCCATAATACCATCCAAAGAATATTGGGTGGAGATAAGTCTGCTCTAGATCTAGTTAACACAATAACCATTTTTAGGTCTCAGCGAATTGGGATGGTTCAAACCATG : GAGCAATACCTCTTTTGCTATGATGCCGTTATCGATGAGCTTGAAGACCTCATTTCAGATAGCCAATGAAGAAGAGAGTTCATAATG : CAACTGGTTCTTCCTTGCTGCAATCATGCTTCTGTACTTGCTTACAAATGAGAAGAAATAGAACAATAATTTGTTCTGAAGAAGCAAATCAGTTGGGTCCACTTGAGTTTCTTACTGTTCTTACCATGTAGGAATAAGCATAAAACGTGCAAAATATCGTATGTTGTATTTCTGTTTGGAAGTATACATGCTTTTAGAGAGGGAAAAAGAACTTATTTAACACACTCTTAATCGTACCCTGCTTATTGTTGATTACATGTATGGTAAGTTGATGATGTTCAAGGTAGC : TTGTGAACAAAAACAACCCATTAATA</gDNA_template>
            <first_frame> E  S  A  Y  K  E  S  S  E  V  N  I  L  P  R  G  A  D  C  P  F  G  I  G  G  R  Y  Q  R  W  P  P  P  V  N  S  C  R  R  R  R  R  H  P  S  L  S  I  S  P  T  I  Q  F  L  R  E  S  F  C  R  V  I  S  S  V  I  A  W  K  Y  S  K  S  S  R  T  R  G  F  L  L  P  K  K  S  A  K  S  S  *  R  C  R :   Q  L  G  *  E  L  Q  K  *  K  V  D  A  Q  W  L  *  T  A  Q  T  L  A  K  I  D  T  L  M  F  C  H  :  L  T  I  T  G  L  F  W  T  H  Q  L  E  D  I  *  M  Q  A  S  L  R :   Y  L  K  T  C  L  S  L  L  Q  H  K  V  L  Y  N  T  L  L  K  T  S  G  K  *  *  S  S  I  A  V  L  *  L  *  C  L  H  N  C  L  T  T  T  R :   L  S  S  V  G  I  I  F  R  Q  M  V  V  P  E  D  L  A  I  Y  V  L  L  R  S  G  *  R  R  L  R  L  H  *  F  C  D  V  W  R  *  T  I  L  S :   Q  Q  N  H  L  C  V  F  Y  T  F  N  I  P  T  G  L  T  M  E  F  Q  R  T  L  L  L  F  V  K  Y  *  N  K  H  L  V  S  H  P  V  L  D  Q  L  W  C  T  A   : V  Q  V  L  V  G  L  E  H  T  V  Q  S  I  I  P  S  K  E  Y  W  V  E  I  S  L  L  *  I  *  L  T  Q  *  P  F  L  G  L  S  E  L  G  W  F  K  P  W :   S  N  T  S  F  A  M  M  P  L  S  M  S  L  K  T  S  F  Q  I  A  N  E  E  E  S  S  *  C :   N  W  F  F  L  A  A  I  M  L  L  Y  L  L  T  N  E  K  K  *  N  N  N  L  F  *  R  S  K  S  V  G  S  T  *  V  S  Y  C  S  Y  H  V  G  I  S  I  K  R  A  K  Y  R  M  L  Y  F  C  L  E  V  Y  M  L  L  E  R  E  K  E  L  I  *  H  T  L  N  R  T  L  L  I  V  D  Y  M  Y  G  K  L  M  M  F  K  V  A :   C  E  Q  K  Q  P  I  N  </first_frame>
            <second_frame>  K  V  R  T  K  K  A  V  K  *  T  S  Y  H  G  V  R  T  V  H  S  E  S  E  A  D  I  S  D  G  H  R  R  *  T  R  V  V  V  V  V  V  T  Q  A  F  R  F  L  R  R  F  S  S  *  E  S  R  S  V  E  *  S  A  A  L  L  L  G  S  T  Q  S  L  Q  G  Q  E  V  F  C  S  R  K  N  P  P  R  V  H  D  V  A   : G  N  *  D  E  S  F  R  N  E  K  *  M  L  N  G  F  E  Q  R  K  H  *  Q  K  S  I  H  *  C  S  A  I :   *  Q  *  Q  G  C  F  G  P  T  S  *  R  I  Y  K  C  K  L  H  *   : D  I  *  R  R  V  S  V  Y  C  N  T  R  S  S  T  T  H  F  *  R  L  L  G  N  D  N  P  A  S  L  S  C  D  C  D  A  Y  T  I  V  *  Q  L  Q   : D  C  Q  V  W  G  L  F  S  G  R  W  W  S  Q  K  I  W  Q  Y  M  Y  C  Y  E  V  D  K  D  D  S  D  F  I  D  F  A  M  S  G  G  E  L  Y  *   : V  N  R  T  T  F  V  C  F  T  H  S  I  S  R  L  A  *  P  W  S  S  K  G  H  S  C  C  S  *  N  T  E  T  N  I  *  C  P  T  Q  S  W  T  N  C  G  A  L  Q  :  C  R  Y  W  *  D  W  N  I  L  C  N  P  *  Y  H  P  K  N  I  G  W  R  *  V  C  S  R  S  S  *  H  N  N  H  F  *  V  S  A  N  W  D  G  S  N  H   : G  A  I  P  L  L  L  *  C  R  Y  R  *  A  *  R  P  H  F  R  *  P  M  K  K  R  V  H  N   : A  T  G  S  S  L  L  Q  S  C  F  C  T  C  L  Q  M  R  R  N  R  T  I  I  C  S  E  E  A  N  Q  L  G  P  L  E  F  L  T  V  L  T  M  *  E  *  A  *  N  V  Q  N  I  V  C  C  I  S  V  W  K  Y  T  C  F  *  R  G  K  K  N  L  F  N  T  L  L  I  V  P  C  L  L  L  I  T  C  M  V  S  *  *  C  S  R  *   : L  V  N  K  N  N  P  L  I </second_frame>
            <third_frame>   K  C  V  Q  R  K  Q  *  S  E  H  P  T  T  G  C  G  L  S  I  R  N  R  R  Q  I  S  A  M  A  T  A  G  K  L  V  S  S  S  S  S  S  P  K  P  F  D  F  S  D  D  S  V  P  K  R  V  V  L  S  S  D  Q  Q  R  Y  C  L  E  V  L  K  V  F  K  D  K  R  F  S  A  P  E  K  I  R  Q  E  F  M  T  L  Q  :  A  T  R  M  R  A  S  E  M  K  S  R  C  S  M  A  L  N  S  A  N  I  S  K  N  R  Y  T  D  V  L  P   : F  D  N  N  R  V  V  L  D  P  P  A  R  G  Y  I  N  A  S  F  I  K  :  I  S  E  D  V  S  Q  F  I  A  T  Q  G  P  L  Q  H  T  F  E  D  F  W  E  M  I  I  Q  H  R  C  P  V  I  V  M  L  T  Q  L  F  D  N  Y  K  :  I  V  K  C  G  D  Y  F  Q  A  D  G  G  P  R  R  F  G  N  I  C  I  V  T  K  W  I  K  T  T  Q  T  S  L  I  L  R  C  L  E  V  N  Y  I  E  :  S  T  E  P  P  L  C  V  L  H  I  Q  Y  P  D  W  P  D  H  G  V  P  K  D  T  L  A  V  R  E  I  L  K  Q  T  F  S  V  P  P  S  L  G  P  I  V  V  H  C  S :   A  G  I  G  R  T  G  T  Y  C  A  I  H  N  T  I  Q  R  I  L  G  G  D  K  S  A  L  D  L  V  N  T  I  T  I  F  R  S  Q  R  I  G  M  V  Q  T  M  :  E  Q  Y  L  F  C  Y  D  A  V  I  D  E  L  E  D  L  I  S  D  S  Q  *  R  R  E  F  I  M  :  Q  L  V  L  P  C  C  N  H  A  S  V  L  A  Y  K  *  E  E  I  E  Q  *  F  V  L  K  K  Q  I  S  W  V  H  L  S  F  L  L  F  L  P  C  R  N  K  H  K  T  C  K  I  S  Y  V  V  F  L  F  G  S  I  H  A  F  R  E  G  K  R  T  Y  L  T  H  S  *  S  Y  P  A  Y  C  *  L  H  V  W  *  V  D  D  V  Q  G  S  :  L  *  T  K  T  T  H  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89737" stop="89483"/>
                    <exon start="86605" stop="86509"/>
                    <exon start="86416" stop="86352"/>
                    <exon start="86222" stop="86088"/>
                    <exon start="84232" stop="84098"/>
                    <exon start="82775" stop="82627"/>
                    <exon start="82533" stop="82392"/>
                    <exon start="82059" stop="81991"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1044</number_coding_nucleotides>
                  <number_encoded_amino_acids>348</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SEHPTTGCGLSIRNRRQISAMATAGKLVSSSSSSPKPFDFSDDSVPKRVVLSSDQQRYCLEVLKVFKDKRFSAPEKIRQEFMTLQATRMRASEMKSRCSMALNSANISKNRYTDVLPFDNNRVVLDPPARGYINASFIKISEDVSQFIATQGPLQHTFEDFWEMIIQHRCPVIVMLTQLFDNYKIVKCGDYFQADGGPRRFGNICIVTKWIKTTQTSLILRCLEVNYIESTEPPLCVLHIQYPDWPDHGVPKDTLAVREILKQTFSVPPSLGPIVVHCSAGIGRTGTYCAIHNTIQRILGGDKSALDLVNTITIFRSQRIGMVQTMEQYLFCYDAVIDELEDLISDSQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="89763" e_stop="89483"/>
            <exon e_start="86605" e_stop="86509"/>
            <exon e_start="86416" e_stop="86352"/>
            <exon e_start="86222" e_stop="86088"/>
            <exon e_start="84232" e_stop="84098"/>
            <exon e_start="82775" e_stop="82627"/>
            <exon e_start="82533" e_stop="82392"/>
            <exon e_start="82059" e_stop="81973"/>
            <exon e_start="81897" e_stop="81599"/>
            <exon e_start="81373" e_stop="81358"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.637" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.829" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.834" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.857" acc_prob="0.116" e_score="1.000"/>
          <exon-intron don_prob="0.914" acc_prob="0.910" e_score="1.000"/>
          <exon-intron don_prob="0.915" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.843" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.545" e_score="0.990"/>
          <exon-only e_score="0.562"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="89763" e_stop="89483" e_length="281"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.637">
            <gDNA_intron_boundary i_start="89482" i_stop="86606" i_length="2877"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86605" e_stop="86509" e_length="97"/>
          </exon>
          <intron i_serial="2" don_prob="0.966" acc_prob="0.829">
            <gDNA_intron_boundary i_start="86508" i_stop="86417" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="86416" e_stop="86352" e_length="65"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.986">
            <gDNA_intron_boundary i_start="86351" i_stop="86223" i_length="129"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="86222" e_stop="86088" e_length="135"/>
          </exon>
          <intron i_serial="4" don_prob="0.834" acc_prob="0.993">
            <gDNA_intron_boundary i_start="86087" i_stop="84233" i_length="1855"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="84232" e_stop="84098" e_length="135"/>
          </exon>
          <intron i_serial="5" don_prob="0.857" acc_prob="0.116">
            <gDNA_intron_boundary i_start="84097" i_stop="82776" i_length="1322"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="82775" e_stop="82627" e_length="149"/>
          </exon>
          <intron i_serial="6" don_prob="0.914" acc_prob="0.910">
            <gDNA_intron_boundary i_start="82626" i_stop="82534" i_length="93"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="82533" e_stop="82392" e_length="142"/>
          </exon>
          <intron i_serial="7" don_prob="0.915" acc_prob="0.987">
            <gDNA_intron_boundary i_start="82391" i_stop="82060" i_length="332"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="82059" e_stop="81973" e_length="87"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="0.843">
            <gDNA_intron_boundary i_start="81972" i_stop="81898" i_length="75"/>
          </intron>
          <exon e_serial="9" e_score="0.990">
            <gDNA_exon_boundary e_start="81897" e_stop="81599" e_length="299"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.545">
            <gDNA_intron_boundary i_start="81598" i_stop="81374" i_length="225"/>
          </intron>
          <exon e_serial="10" e_score="0.562">
            <gDNA_exon_boundary e_start="81373" e_stop="81358" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89763" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89763" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89754" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89747" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89746" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84098"/>
              <exon start="82775" stop="82674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89744" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216892" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89741" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84098"/>
              <exon start="82775" stop="82679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89740" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89735" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84098"/>
              <exon start="82775" stop="82680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89732" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89725" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84098"/>
              <exon start="82775" stop="82732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89723" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89721" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89715" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89713" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84098"/>
              <exon start="82775" stop="82683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89701" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89700" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89658" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86556" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86140" stop="86088"/>
              <exon start="84232" stop="84098"/>
              <exon start="82775" stop="82627"/>
              <exon start="82533" stop="82424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84162" stop="84098"/>
              <exon start="82775" stop="82627"/>
              <exon start="82533" stop="82392"/>
              <exon start="82059" stop="81973"/>
              <exon start="81897" stop="81642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82049" stop="81973"/>
              <exon start="81897" stop="81599"/>
              <exon start="81373" stop="81358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216865" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAGTGCGTACAAAGAAAGCAGTGAAGTGAACATCCTACCACGGGGTGCGGACTGTCCATTCGGAATCGGAGGCAGATATCAGCGATGGCCACCGCCGGTAAACTCGTGTCGTCGTCGTCGTCGTCACCCAAGCCTTTCGATTTCTCCGACGATTCAGTTCCTAAGAGAGTCGTTCTGTCGAGTGATCAGCAGCGTTATTGCTTGGAAGTACTCAAAGTCTTCAAGGACAAGAGGTTTTCTGCTCCCGAAAAAATCCGCCAAGAGTTCATGACGTTGCAG : GCAACTAGGATGAGAGCTTCAGAAATGAAAAGTAGATGCTCAATGGCTTTGAACAGCGCAAACATTAGCAAAAATCGATACACTGATGTTCTGCCAT : TTGACAATAACAGGGTTGTTTTGGACCCACCAGCTAGAGGATATATAAATGCAAGCTTCATTAAG : ATATCTGAAGACGTGTCTCAGTTTATTGCAACACAAGGTCCTCTACAACACACTTTTGAAGACTTCTGGGAAATGATAATCCAGCATCGCTGTCCTGTGATTGTGATGCTTACACAATTGTTTGACAACTACAAG : ATTGTCAAGTGTGGGGATTATTTTCAGGCAGATGGTGGTCCCAGAAGATTTGGCAATATATGTATTGTTACGAAGTGGATAAAGACGACTCAGACTTCATTGATTTTGCGATGTCTGGAGGTGAACTATATTGAG : TCAACAGAACCACCTTTGTGTGTTTTACACATTCAATATCCCGACTGGCCTGACCATGGAGTTCCAAAGGACACTCTTGCTGTTCGTGAAATACTGAAACAAACATTTAGTGTCCCACCCAGTCTTGGACCAATTGTGGTGCACTGCAG : TGCAGGTATTGGTAGGACTGGAACATACTGTGCAATCCATAATACCATCCAAAGAATATTGGGTGGAGATAAGTCTGCTCTAGATCTAGTTAACACAATAACCATTTTTAGGTCTCAGCGAATTGGGATGGTTCAAACCATG : GAGCAATACCTCTTTTGCTATGATGCCGTTATCGATGAGCTTGAAGACCTCATTTCAGATAGCCAATGAAGAAGAGAGTTCATAATG : CAACTGGTTCTTCCTTGCTGCAATCATGCTTCTGTACTTGCTTACAAATGAGAAGAAATAGAACAATAATTTGTTCTGAAGAAGCAAATCAGTTGGGTCCACTTGAGTTTCTTACTGTTCTTACCATGTAGGAATAAGCATAAAACGTGCAAAATATCGTATGTTGTATTTCTGTTTGGAAGTATACATGCTTTTAGAGAGGGAAAAAGAACTTATTTAACACACTCTTAATCGTACCCTGCTTATTGTTGATTACATGTATGGTAAGTTGATGATGTTCAAGGTAGCTTTTACACCAA : TTGTGAACAAAAACAA</gDNA_template>
            <first_frame> E  S  A  Y  K  E  S  S  E  V  N  I  L  P  R  G  A  D  C  P  F  G  I  G  G  R  Y  Q  R  W  P  P  P  V  N  S  C  R  R  R  R  R  H  P  S  L  S  I  S  P  T  I  Q  F  L  R  E  S  F  C  R  V  I  S  S  V  I  A  W  K  Y  S  K  S  S  R  T  R  G  F  L  L  P  K  K  S  A  K  S  S  *  R  C  R :   Q  L  G  *  E  L  Q  K  *  K  V  D  A  Q  W  L  *  T  A  Q  T  L  A  K  I  D  T  L  M  F  C  H  :  L  T  I  T  G  L  F  W  T  H  Q  L  E  D  I  *  M  Q  A  S  L  R :   Y  L  K  T  C  L  S  L  L  Q  H  K  V  L  Y  N  T  L  L  K  T  S  G  K  *  *  S  S  I  A  V  L  *  L  *  C  L  H  N  C  L  T  T  T  R :   L  S  S  V  G  I  I  F  R  Q  M  V  V  P  E  D  L  A  I  Y  V  L  L  R  S  G  *  R  R  L  R  L  H  *  F  C  D  V  W  R  *  T  I  L  S :   Q  Q  N  H  L  C  V  F  Y  T  F  N  I  P  T  G  L  T  M  E  F  Q  R  T  L  L  L  F  V  K  Y  *  N  K  H  L  V  S  H  P  V  L  D  Q  L  W  C  T  A   : V  Q  V  L  V  G  L  E  H  T  V  Q  S  I  I  P  S  K  E  Y  W  V  E  I  S  L  L  *  I  *  L  T  Q  *  P  F  L  G  L  S  E  L  G  W  F  K  P  W :   S  N  T  S  F  A  M  M  P  L  S  M  S  L  K  T  S  F  Q  I  A  N  E  E  E  S  S  *  C :   N  W  F  F  L  A  A  I  M  L  L  Y  L  L  T  N  E  K  K  *  N  N  N  L  F  *  R  S  K  S  V  G  S  T  *  V  S  Y  C  S  Y  H  V  G  I  S  I  K  R  A  K  Y  R  M  L  Y  F  C  L  E  V  Y  M  L  L  E  R  E  K  E  L  I  *  H  T  L  N  R  T  L  L  I  V  D  Y  M  Y  G  K  L  M  M  F  K  V  A  F  T  P   : I  V  N  K  N   </first_frame>
            <second_frame>  K  V  R  T  K  K  A  V  K  *  T  S  Y  H  G  V  R  T  V  H  S  E  S  E  A  D  I  S  D  G  H  R  R  *  T  R  V  V  V  V  V  V  T  Q  A  F  R  F  L  R  R  F  S  S  *  E  S  R  S  V  E  *  S  A  A  L  L  L  G  S  T  Q  S  L  Q  G  Q  E  V  F  C  S  R  K  N  P  P  R  V  H  D  V  A   : G  N  *  D  E  S  F  R  N  E  K  *  M  L  N  G  F  E  Q  R  K  H  *  Q  K  S  I  H  *  C  S  A  I :   *  Q  *  Q  G  C  F  G  P  T  S  *  R  I  Y  K  C  K  L  H  *   : D  I  *  R  R  V  S  V  Y  C  N  T  R  S  S  T  T  H  F  *  R  L  L  G  N  D  N  P  A  S  L  S  C  D  C  D  A  Y  T  I  V  *  Q  L  Q   : D  C  Q  V  W  G  L  F  S  G  R  W  W  S  Q  K  I  W  Q  Y  M  Y  C  Y  E  V  D  K  D  D  S  D  F  I  D  F  A  M  S  G  G  E  L  Y  *   : V  N  R  T  T  F  V  C  F  T  H  S  I  S  R  L  A  *  P  W  S  S  K  G  H  S  C  C  S  *  N  T  E  T  N  I  *  C  P  T  Q  S  W  T  N  C  G  A  L  Q  :  C  R  Y  W  *  D  W  N  I  L  C  N  P  *  Y  H  P  K  N  I  G  W  R  *  V  C  S  R  S  S  *  H  N  N  H  F  *  V  S  A  N  W  D  G  S  N  H   : G  A  I  P  L  L  L  *  C  R  Y  R  *  A  *  R  P  H  F  R  *  P  M  K  K  R  V  H  N   : A  T  G  S  S  L  L  Q  S  C  F  C  T  C  L  Q  M  R  R  N  R  T  I  I  C  S  E  E  A  N  Q  L  G  P  L  E  F  L  T  V  L  T  M  *  E  *  A  *  N  V  Q  N  I  V  C  C  I  S  V  W  K  Y  T  C  F  *  R  G  K  K  N  L  F  N  T  L  L  I  V  P  C  L  L  L  I  T  C  M  V  S  *  *  C  S  R  *  L  L  H  Q  :  L  *  T  K  T  </second_frame>
            <third_frame>   K  C  V  Q  R  K  Q  *  S  E  H  P  T  T  G  C  G  L  S  I  R  N  R  R  Q  I  S  A  M  A  T  A  G  K  L  V  S  S  S  S  S  S  P  K  P  F  D  F  S  D  D  S  V  P  K  R  V  V  L  S  S  D  Q  Q  R  Y  C  L  E  V  L  K  V  F  K  D  K  R  F  S  A  P  E  K  I  R  Q  E  F  M  T  L  Q  :  A  T  R  M  R  A  S  E  M  K  S  R  C  S  M  A  L  N  S  A  N  I  S  K  N  R  Y  T  D  V  L  P   : F  D  N  N  R  V  V  L  D  P  P  A  R  G  Y  I  N  A  S  F  I  K  :  I  S  E  D  V  S  Q  F  I  A  T  Q  G  P  L  Q  H  T  F  E  D  F  W  E  M  I  I  Q  H  R  C  P  V  I  V  M  L  T  Q  L  F  D  N  Y  K  :  I  V  K  C  G  D  Y  F  Q  A  D  G  G  P  R  R  F  G  N  I  C  I  V  T  K  W  I  K  T  T  Q  T  S  L  I  L  R  C  L  E  V  N  Y  I  E  :  S  T  E  P  P  L  C  V  L  H  I  Q  Y  P  D  W  P  D  H  G  V  P  K  D  T  L  A  V  R  E  I  L  K  Q  T  F  S  V  P  P  S  L  G  P  I  V  V  H  C  S :   A  G  I  G  R  T  G  T  Y  C  A  I  H  N  T  I  Q  R  I  L  G  G  D  K  S  A  L  D  L  V  N  T  I  T  I  F  R  S  Q  R  I  G  M  V  Q  T  M  :  E  Q  Y  L  F  C  Y  D  A  V  I  D  E  L  E  D  L  I  S  D  S  Q  *  R  R  E  F  I  M  :  Q  L  V  L  P  C  C  N  H  A  S  V  L  A  Y  K  *  E  E  I  E  Q  *  F  V  L  K  K  Q  I  S  W  V  H  L  S  F  L  L  F  L  P  C  R  N  K  H  K  T  C  K  I  S  Y  V  V  F  L  F  G  S  I  H  A  F  R  E  G  K  R  T  Y  L  T  H  S  *  S  Y  P  A  Y  C  *  L  H  V  W  *  V  D  D  V  Q  G  S  F  Y  T  N :   C  E  Q  K  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89737" stop="89483"/>
                    <exon start="86605" stop="86509"/>
                    <exon start="86416" stop="86352"/>
                    <exon start="86222" stop="86088"/>
                    <exon start="84232" stop="84098"/>
                    <exon start="82775" stop="82627"/>
                    <exon start="82533" stop="82392"/>
                    <exon start="82059" stop="81991"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1044</number_coding_nucleotides>
                  <number_encoded_amino_acids>348</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SEHPTTGCGLSIRNRRQISAMATAGKLVSSSSSSPKPFDFSDDSVPKRVVLSSDQQRYCLEVLKVFKDKRFSAPEKIRQEFMTLQATRMRASEMKSRCSMALNSANISKNRYTDVLPFDNNRVVLDPPARGYINASFIKISEDVSQFIATQGPLQHTFEDFWEMIIQHRCPVIVMLTQLFDNYKIVKCGDYFQADGGPRRFGNICIVTKWIKTTQTSLILRCLEVNYIESTEPPLCVLHIQYPDWPDHGVPKDTLAVREILKQTFSVPPSLGPIVVHCSAGIGRTGTYCAIHNTIQRILGGDKSALDLVNTITIFRSQRIGMVQTMEQYLFCYDAVIDELEDLISDSQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="89763" e_stop="89483"/>
            <exon e_start="86605" e_stop="86509"/>
            <exon e_start="86416" e_stop="86352"/>
            <exon e_start="86222" e_stop="86088"/>
            <exon e_start="84232" e_stop="84098"/>
            <exon e_start="82775" e_stop="82627"/>
            <exon e_start="82533" e_stop="82392"/>
            <exon e_start="82059" e_stop="81973"/>
            <exon e_start="81897" e_stop="81585"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.637" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.829" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.834" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.857" acc_prob="0.116" e_score="1.000"/>
          <exon-intron don_prob="0.914" acc_prob="0.910" e_score="1.000"/>
          <exon-intron don_prob="0.915" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.843" e_score="1.000"/>
          <exon-only e_score="0.942"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="89763" e_stop="89483" e_length="281"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.637">
            <gDNA_intron_boundary i_start="89482" i_stop="86606" i_length="2877"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86605" e_stop="86509" e_length="97"/>
          </exon>
          <intron i_serial="2" don_prob="0.966" acc_prob="0.829">
            <gDNA_intron_boundary i_start="86508" i_stop="86417" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="86416" e_stop="86352" e_length="65"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.986">
            <gDNA_intron_boundary i_start="86351" i_stop="86223" i_length="129"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="86222" e_stop="86088" e_length="135"/>
          </exon>
          <intron i_serial="4" don_prob="0.834" acc_prob="0.993">
            <gDNA_intron_boundary i_start="86087" i_stop="84233" i_length="1855"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="84232" e_stop="84098" e_length="135"/>
          </exon>
          <intron i_serial="5" don_prob="0.857" acc_prob="0.116">
            <gDNA_intron_boundary i_start="84097" i_stop="82776" i_length="1322"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="82775" e_stop="82627" e_length="149"/>
          </exon>
          <intron i_serial="6" don_prob="0.914" acc_prob="0.910">
            <gDNA_intron_boundary i_start="82626" i_stop="82534" i_length="93"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="82533" e_stop="82392" e_length="142"/>
          </exon>
          <intron i_serial="7" don_prob="0.915" acc_prob="0.987">
            <gDNA_intron_boundary i_start="82391" i_stop="82060" i_length="332"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="82059" e_stop="81973" e_length="87"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="0.843">
            <gDNA_intron_boundary i_start="81972" i_stop="81898" i_length="75"/>
          </intron>
          <exon e_serial="9" e_score="0.942">
            <gDNA_exon_boundary e_start="81897" e_stop="81585" e_length="313"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89763" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89763" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89754" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89747" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89746" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84098"/>
              <exon start="82775" stop="82674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89744" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216892" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89741" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84098"/>
              <exon start="82775" stop="82679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89740" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89735" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84098"/>
              <exon start="82775" stop="82680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89732" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89725" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84098"/>
              <exon start="82775" stop="82732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89723" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89721" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89715" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89713" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84098"/>
              <exon start="82775" stop="82683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89701" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89700" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89658" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86556" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86140" stop="86088"/>
              <exon start="84232" stop="84098"/>
              <exon start="82775" stop="82627"/>
              <exon start="82533" stop="82424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84162" stop="84098"/>
              <exon start="82775" stop="82627"/>
              <exon start="82533" stop="82392"/>
              <exon start="82059" stop="81973"/>
              <exon start="81897" stop="81642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82430" stop="82392"/>
              <exon start="82059" stop="81973"/>
              <exon start="81897" stop="81585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216430" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAGTGCGTACAAAGAAAGCAGTGAAGTGAACATCCTACCACGGGGTGCGGACTGTCCATTCGGAATCGGAGGCAGATATCAGCGATGGCCACCGCCGGTAAACTCGTGTCGTCGTCGTCGTCGTCACCCAAGCCTTTCGATTTCTCCGACGATTCAGTTCCTAAGAGAGTCGTTCTGTCGAGTGATCAGCAGCGTTATTGCTTGGAAGTACTCAAAGTCTTCAAGGACAAGAGGTTTTCTGCTCCCGAAAAAATCCGCCAAGAGTTCATGACGTTGCAG : GCAACTAGGATGAGAGCTTCAGAAATGAAAAGTAGATGCTCAATGGCTTTGAACAGCGCAAACATTAGCAAAAATCGATACACTGATGTTCTGCCAT : TTGACAATAACAGGGTTGTTTTGGACCCACCAGCTAGAGGATATATAAATGCAAGCTTCATTAAG : ATATCTGAAGACGTGTCTCAGTTTATTGCAACACAAGGTCCTCTACAACACACTTTTGAAGACTTCTGGGAAATGATAATCCAGCATCGCTGTCCTGTGATTGTGATGCTTACACAATTGTTTGACAACTACAAG : ATTGTCAAGTGTGGGGATTATTTTCAGGCAGATGGTGGTCCCAGAAGATTTGGCAATATATGTATTGTTACGAAGTGGATAAAGACGACTCAGACTTCATTGATTTTGCGATGTCTGGAGGTGAACTATATTGAG : TCAACAGAACCACCTTTGTGTGTTTTACACATTCAATATCCCGACTGGCCTGACCATGGAGTTCCAAAGGACACTCTTGCTGTTCGTGAAATACTGAAACAAACATTTAGTGTCCCACCCAGTCTTGGACCAATTGTGGTGCACTGCAG : TGCAGGTATTGGTAGGACTGGAACATACTGTGCAATCCATAATACCATCCAAAGAATATTGGGTGGAGATAAGTCTGCTCTAGATCTAGTTAACACAATAACCATTTTTAGGTCTCAGCGAATTGGGATGGTTCAAACCATG : GAGCAATACCTCTTTTGCTATGATGCCGTTATCGATGAGCTTGAAGACCTCATTTCAGATAGCCAATGAAGAAGAGAGTTCATAATG : CAACTGGTTCTTCCTTGCTGCAATCATGCTTCTGTACTTGCTTACAAATGAGAAGAAATAGAACAATAATTTGTTCTGAAGAAGCAAATCAGTTGGGTCCACTTGAGTTTCTTACTGTTCTTACCATGTAGGAATAAGCATAAAACGTGCAAAATATCGTATGTTGTATTTCTGTTTGGAAGTATACATGCTTTTAGAGAGGGAAAAAGAACTTATTTAACACACTCTTAATCGTACCCTGCTTATTGTTGATTACATGTATGGTAAGTTGATGATGTTCAAGGTAGCTTTTACACCAACTTCCTTGCAATGG</gDNA_template>
            <first_frame> E  S  A  Y  K  E  S  S  E  V  N  I  L  P  R  G  A  D  C  P  F  G  I  G  G  R  Y  Q  R  W  P  P  P  V  N  S  C  R  R  R  R  R  H  P  S  L  S  I  S  P  T  I  Q  F  L  R  E  S  F  C  R  V  I  S  S  V  I  A  W  K  Y  S  K  S  S  R  T  R  G  F  L  L  P  K  K  S  A  K  S  S  *  R  C  R :   Q  L  G  *  E  L  Q  K  *  K  V  D  A  Q  W  L  *  T  A  Q  T  L  A  K  I  D  T  L  M  F  C  H  :  L  T  I  T  G  L  F  W  T  H  Q  L  E  D  I  *  M  Q  A  S  L  R :   Y  L  K  T  C  L  S  L  L  Q  H  K  V  L  Y  N  T  L  L  K  T  S  G  K  *  *  S  S  I  A  V  L  *  L  *  C  L  H  N  C  L  T  T  T  R :   L  S  S  V  G  I  I  F  R  Q  M  V  V  P  E  D  L  A  I  Y  V  L  L  R  S  G  *  R  R  L  R  L  H  *  F  C  D  V  W  R  *  T  I  L  S :   Q  Q  N  H  L  C  V  F  Y  T  F  N  I  P  T  G  L  T  M  E  F  Q  R  T  L  L  L  F  V  K  Y  *  N  K  H  L  V  S  H  P  V  L  D  Q  L  W  C  T  A   : V  Q  V  L  V  G  L  E  H  T  V  Q  S  I  I  P  S  K  E  Y  W  V  E  I  S  L  L  *  I  *  L  T  Q  *  P  F  L  G  L  S  E  L  G  W  F  K  P  W :   S  N  T  S  F  A  M  M  P  L  S  M  S  L  K  T  S  F  Q  I  A  N  E  E  E  S  S  *  C :   N  W  F  F  L  A  A  I  M  L  L  Y  L  L  T  N  E  K  K  *  N  N  N  L  F  *  R  S  K  S  V  G  S  T  *  V  S  Y  C  S  Y  H  V  G  I  S  I  K  R  A  K  Y  R  M  L  Y  F  C  L  E  V  Y  M  L  L  E  R  E  K  E  L  I  *  H  T  L  N  R  T  L  L  I  V  D  Y  M  Y  G  K  L  M  M  F  K  V  A  F  T  P  T  S  L  Q  W </first_frame>
            <second_frame>  K  V  R  T  K  K  A  V  K  *  T  S  Y  H  G  V  R  T  V  H  S  E  S  E  A  D  I  S  D  G  H  R  R  *  T  R  V  V  V  V  V  V  T  Q  A  F  R  F  L  R  R  F  S  S  *  E  S  R  S  V  E  *  S  A  A  L  L  L  G  S  T  Q  S  L  Q  G  Q  E  V  F  C  S  R  K  N  P  P  R  V  H  D  V  A   : G  N  *  D  E  S  F  R  N  E  K  *  M  L  N  G  F  E  Q  R  K  H  *  Q  K  S  I  H  *  C  S  A  I :   *  Q  *  Q  G  C  F  G  P  T  S  *  R  I  Y  K  C  K  L  H  *   : D  I  *  R  R  V  S  V  Y  C  N  T  R  S  S  T  T  H  F  *  R  L  L  G  N  D  N  P  A  S  L  S  C  D  C  D  A  Y  T  I  V  *  Q  L  Q   : D  C  Q  V  W  G  L  F  S  G  R  W  W  S  Q  K  I  W  Q  Y  M  Y  C  Y  E  V  D  K  D  D  S  D  F  I  D  F  A  M  S  G  G  E  L  Y  *   : V  N  R  T  T  F  V  C  F  T  H  S  I  S  R  L  A  *  P  W  S  S  K  G  H  S  C  C  S  *  N  T  E  T  N  I  *  C  P  T  Q  S  W  T  N  C  G  A  L  Q  :  C  R  Y  W  *  D  W  N  I  L  C  N  P  *  Y  H  P  K  N  I  G  W  R  *  V  C  S  R  S  S  *  H  N  N  H  F  *  V  S  A  N  W  D  G  S  N  H   : G  A  I  P  L  L  L  *  C  R  Y  R  *  A  *  R  P  H  F  R  *  P  M  K  K  R  V  H  N   : A  T  G  S  S  L  L  Q  S  C  F  C  T  C  L  Q  M  R  R  N  R  T  I  I  C  S  E  E  A  N  Q  L  G  P  L  E  F  L  T  V  L  T  M  *  E  *  A  *  N  V  Q  N  I  V  C  C  I  S  V  W  K  Y  T  C  F  *  R  G  K  K  N  L  F  N  T  L  L  I  V  P  C  L  L  L  I  T  C  M  V  S  *  *  C  S  R  *  L  L  H  Q  L  P  C  N   </second_frame>
            <third_frame>   K  C  V  Q  R  K  Q  *  S  E  H  P  T  T  G  C  G  L  S  I  R  N  R  R  Q  I  S  A  M  A  T  A  G  K  L  V  S  S  S  S  S  S  P  K  P  F  D  F  S  D  D  S  V  P  K  R  V  V  L  S  S  D  Q  Q  R  Y  C  L  E  V  L  K  V  F  K  D  K  R  F  S  A  P  E  K  I  R  Q  E  F  M  T  L  Q  :  A  T  R  M  R  A  S  E  M  K  S  R  C  S  M  A  L  N  S  A  N  I  S  K  N  R  Y  T  D  V  L  P   : F  D  N  N  R  V  V  L  D  P  P  A  R  G  Y  I  N  A  S  F  I  K  :  I  S  E  D  V  S  Q  F  I  A  T  Q  G  P  L  Q  H  T  F  E  D  F  W  E  M  I  I  Q  H  R  C  P  V  I  V  M  L  T  Q  L  F  D  N  Y  K  :  I  V  K  C  G  D  Y  F  Q  A  D  G  G  P  R  R  F  G  N  I  C  I  V  T  K  W  I  K  T  T  Q  T  S  L  I  L  R  C  L  E  V  N  Y  I  E  :  S  T  E  P  P  L  C  V  L  H  I  Q  Y  P  D  W  P  D  H  G  V  P  K  D  T  L  A  V  R  E  I  L  K  Q  T  F  S  V  P  P  S  L  G  P  I  V  V  H  C  S :   A  G  I  G  R  T  G  T  Y  C  A  I  H  N  T  I  Q  R  I  L  G  G  D  K  S  A  L  D  L  V  N  T  I  T  I  F  R  S  Q  R  I  G  M  V  Q  T  M  :  E  Q  Y  L  F  C  Y  D  A  V  I  D  E  L  E  D  L  I  S  D  S  Q  *  R  R  E  F  I  M  :  Q  L  V  L  P  C  C  N  H  A  S  V  L  A  Y  K  *  E  E  I  E  Q  *  F  V  L  K  K  Q  I  S  W  V  H  L  S  F  L  L  F  L  P  C  R  N  K  H  K  T  C  K  I  S  Y  V  V  F  L  F  G  S  I  H  A  F  R  E  G  K  R  T  Y  L  T  H  S  *  S  Y  P  A  Y  C  *  L  H  V  W  *  V  D  D  V  Q  G  S  F  Y  T  N  F  L  A  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89737" stop="89483"/>
                    <exon start="86605" stop="86509"/>
                    <exon start="86416" stop="86352"/>
                    <exon start="86222" stop="86088"/>
                    <exon start="84232" stop="84098"/>
                    <exon start="82775" stop="82627"/>
                    <exon start="82533" stop="82392"/>
                    <exon start="82059" stop="81991"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1044</number_coding_nucleotides>
                  <number_encoded_amino_acids>348</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SEHPTTGCGLSIRNRRQISAMATAGKLVSSSSSSPKPFDFSDDSVPKRVVLSSDQQRYCLEVLKVFKDKRFSAPEKIRQEFMTLQATRMRASEMKSRCSMALNSANISKNRYTDVLPFDNNRVVLDPPARGYINASFIKISEDVSQFIATQGPLQHTFEDFWEMIIQHRCPVIVMLTQLFDNYKIVKCGDYFQADGGPRRFGNICIVTKWIKTTQTSLILRCLEVNYIESTEPPLCVLHIQYPDWPDHGVPKDTLAVREILKQTFSVPPSLGPIVVHCSAGIGRTGTYCAIHNTIQRILGGDKSALDLVNTITIFRSQRIGMVQTMEQYLFCYDAVIDELEDLISDSQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="89763" e_stop="89483"/>
            <exon e_start="86605" e_stop="86509"/>
            <exon e_start="86416" e_stop="86352"/>
            <exon e_start="86222" e_stop="86088"/>
            <exon e_start="84232" e_stop="84098"/>
            <exon e_start="82775" e_stop="82627"/>
            <exon e_start="82533" e_stop="82392"/>
            <exon e_start="82059" e_stop="81973"/>
            <exon e_start="81897" e_stop="81642"/>
            <exon e_start="81110" e_stop="81075"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.637" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.829" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.834" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.857" acc_prob="0.116" e_score="1.000"/>
          <exon-intron don_prob="0.914" acc_prob="0.910" e_score="1.000"/>
          <exon-intron don_prob="0.915" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.843" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.996"/>
          <exon-only e_score="0.583"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="89763" e_stop="89483" e_length="281"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.637">
            <gDNA_intron_boundary i_start="89482" i_stop="86606" i_length="2877"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86605" e_stop="86509" e_length="97"/>
          </exon>
          <intron i_serial="2" don_prob="0.966" acc_prob="0.829">
            <gDNA_intron_boundary i_start="86508" i_stop="86417" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="86416" e_stop="86352" e_length="65"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.986">
            <gDNA_intron_boundary i_start="86351" i_stop="86223" i_length="129"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="86222" e_stop="86088" e_length="135"/>
          </exon>
          <intron i_serial="4" don_prob="0.834" acc_prob="0.993">
            <gDNA_intron_boundary i_start="86087" i_stop="84233" i_length="1855"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="84232" e_stop="84098" e_length="135"/>
          </exon>
          <intron i_serial="5" don_prob="0.857" acc_prob="0.116">
            <gDNA_intron_boundary i_start="84097" i_stop="82776" i_length="1322"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="82775" e_stop="82627" e_length="149"/>
          </exon>
          <intron i_serial="6" don_prob="0.914" acc_prob="0.910">
            <gDNA_intron_boundary i_start="82626" i_stop="82534" i_length="93"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="82533" e_stop="82392" e_length="142"/>
          </exon>
          <intron i_serial="7" don_prob="0.915" acc_prob="0.987">
            <gDNA_intron_boundary i_start="82391" i_stop="82060" i_length="332"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="82059" e_stop="81973" e_length="87"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="0.843">
            <gDNA_intron_boundary i_start="81972" i_stop="81898" i_length="75"/>
          </intron>
          <exon e_serial="9" e_score="0.996">
            <gDNA_exon_boundary e_start="81897" e_stop="81642" e_length="256"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="81641" i_stop="81111" i_length="531"/>
          </intron>
          <exon e_serial="10" e_score="0.583">
            <gDNA_exon_boundary e_start="81110" e_stop="81075" e_length="36"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89763" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89763" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89754" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89747" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89746" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84098"/>
              <exon start="82775" stop="82674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89744" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216892" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89741" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84098"/>
              <exon start="82775" stop="82679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89740" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89735" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84098"/>
              <exon start="82775" stop="82680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89732" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89725" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84098"/>
              <exon start="82775" stop="82732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89723" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89721" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89715" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89713" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84098"/>
              <exon start="82775" stop="82683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89701" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89700" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89658" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86556" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86140" stop="86088"/>
              <exon start="84232" stop="84098"/>
              <exon start="82775" stop="82627"/>
              <exon start="82533" stop="82424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84207" stop="84098"/>
              <exon start="82775" stop="82627"/>
              <exon start="82533" stop="82392"/>
              <exon start="82059" stop="81973"/>
              <exon start="81897" stop="81642"/>
              <exon start="81110" stop="81075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84162" stop="84098"/>
              <exon start="82775" stop="82627"/>
              <exon start="82533" stop="82392"/>
              <exon start="82059" stop="81973"/>
              <exon start="81897" stop="81642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538299" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAGTGCGTACAAAGAAAGCAGTGAAGTGAACATCCTACCACGGGGTGCGGACTGTCCATTCGGAATCGGAGGCAGATATCAGCGATGGCCACCGCCGGTAAACTCGTGTCGTCGTCGTCGTCGTCACCCAAGCCTTTCGATTTCTCCGACGATTCAGTTCCTAAGAGAGTCGTTCTGTCGAGTGATCAGCAGCGTTATTGCTTGGAAGTACTCAAAGTCTTCAAGGACAAGAGGTTTTCTGCTCCCGAAAAAATCCGCCAAGAGTTCATGACGTTGCAG : GCAACTAGGATGAGAGCTTCAGAAATGAAAAGTAGATGCTCAATGGCTTTGAACAGCGCAAACATTAGCAAAAATCGATACACTGATGTTCTGCCAT : TTGACAATAACAGGGTTGTTTTGGACCCACCAGCTAGAGGATATATAAATGCAAGCTTCATTAAG : ATATCTGAAGACGTGTCTCAGTTTATTGCAACACAAGGTCCTCTACAACACACTTTTGAAGACTTCTGGGAAATGATAATCCAGCATCGCTGTCCTGTGATTGTGATGCTTACACAATTGTTTGACAACTACAAG : ATTGTCAAGTGTGGGGATTATTTTCAGGCAGATGGTGGTCCCAGAAGATTTGGCAATATATGTATTGTTACGAAGTGGATAAAGACGACTCAGACTTCATTGATTTTGCGATGTCTGGAGGTGAACTATATTGAG : TCAACAGAACCACCTTTGTGTGTTTTACACATTCAATATCCCGACTGGCCTGACCATGGAGTTCCAAAGGACACTCTTGCTGTTCGTGAAATACTGAAACAAACATTTAGTGTCCCACCCAGTCTTGGACCAATTGTGGTGCACTGCAG : TGCAGGTATTGGTAGGACTGGAACATACTGTGCAATCCATAATACCATCCAAAGAATATTGGGTGGAGATAAGTCTGCTCTAGATCTAGTTAACACAATAACCATTTTTAGGTCTCAGCGAATTGGGATGGTTCAAACCATG : GAGCAATACCTCTTTTGCTATGATGCCGTTATCGATGAGCTTGAAGACCTCATTTCAGATAGCCAATGAAGAAGAGAGTTCATAATG : CAACTGGTTCTTCCTTGCTGCAATCATGCTTCTGTACTTGCTTACAAATGAGAAGAAATAGAACAATAATTTGTTCTGAAGAAGCAAATCAGTTGGGTCCACTTGAGTTTCTTACTGTTCTTACCATGTAGGAATAAGCATAAAACGTGCAAAATATCGTATGTTGTATTTCTGTTTGGAAGTATACATGCTTTTAGAGAGGGAAAAAGAACTTATTTAACACACTCTTAATCGTACCCTGCTTATTGTTGATTAC : AAAAAATGTATATCTATACATAGAAAGATTTAAAAA</gDNA_template>
            <first_frame> E  S  A  Y  K  E  S  S  E  V  N  I  L  P  R  G  A  D  C  P  F  G  I  G  G  R  Y  Q  R  W  P  P  P  V  N  S  C  R  R  R  R  R  H  P  S  L  S  I  S  P  T  I  Q  F  L  R  E  S  F  C  R  V  I  S  S  V  I  A  W  K  Y  S  K  S  S  R  T  R  G  F  L  L  P  K  K  S  A  K  S  S  *  R  C  R :   Q  L  G  *  E  L  Q  K  *  K  V  D  A  Q  W  L  *  T  A  Q  T  L  A  K  I  D  T  L  M  F  C  H  :  L  T  I  T  G  L  F  W  T  H  Q  L  E  D  I  *  M  Q  A  S  L  R :   Y  L  K  T  C  L  S  L  L  Q  H  K  V  L  Y  N  T  L  L  K  T  S  G  K  *  *  S  S  I  A  V  L  *  L  *  C  L  H  N  C  L  T  T  T  R :   L  S  S  V  G  I  I  F  R  Q  M  V  V  P  E  D  L  A  I  Y  V  L  L  R  S  G  *  R  R  L  R  L  H  *  F  C  D  V  W  R  *  T  I  L  S :   Q  Q  N  H  L  C  V  F  Y  T  F  N  I  P  T  G  L  T  M  E  F  Q  R  T  L  L  L  F  V  K  Y  *  N  K  H  L  V  S  H  P  V  L  D  Q  L  W  C  T  A   : V  Q  V  L  V  G  L  E  H  T  V  Q  S  I  I  P  S  K  E  Y  W  V  E  I  S  L  L  *  I  *  L  T  Q  *  P  F  L  G  L  S  E  L  G  W  F  K  P  W :   S  N  T  S  F  A  M  M  P  L  S  M  S  L  K  T  S  F  Q  I  A  N  E  E  E  S  S  *  C :   N  W  F  F  L  A  A  I  M  L  L  Y  L  L  T  N  E  K  K  *  N  N  N  L  F  *  R  S  K  S  V  G  S  T  *  V  S  Y  C  S  Y  H  V  G  I  S  I  K  R  A  K  Y  R  M  L  Y  F  C  L  E  V  Y  M  L  L  E  R  E  K  E  L  I  *  H  T  L  N  R  T  L  L  I  V  D  Y  :  K  K  C  I  S  I  H  R  K  I  *  K </first_frame>
            <second_frame>  K  V  R  T  K  K  A  V  K  *  T  S  Y  H  G  V  R  T  V  H  S  E  S  E  A  D  I  S  D  G  H  R  R  *  T  R  V  V  V  V  V  V  T  Q  A  F  R  F  L  R  R  F  S  S  *  E  S  R  S  V  E  *  S  A  A  L  L  L  G  S  T  Q  S  L  Q  G  Q  E  V  F  C  S  R  K  N  P  P  R  V  H  D  V  A   : G  N  *  D  E  S  F  R  N  E  K  *  M  L  N  G  F  E  Q  R  K  H  *  Q  K  S  I  H  *  C  S  A  I :   *  Q  *  Q  G  C  F  G  P  T  S  *  R  I  Y  K  C  K  L  H  *   : D  I  *  R  R  V  S  V  Y  C  N  T  R  S  S  T  T  H  F  *  R  L  L  G  N  D  N  P  A  S  L  S  C  D  C  D  A  Y  T  I  V  *  Q  L  Q   : D  C  Q  V  W  G  L  F  S  G  R  W  W  S  Q  K  I  W  Q  Y  M  Y  C  Y  E  V  D  K  D  D  S  D  F  I  D  F  A  M  S  G  G  E  L  Y  *   : V  N  R  T  T  F  V  C  F  T  H  S  I  S  R  L  A  *  P  W  S  S  K  G  H  S  C  C  S  *  N  T  E  T  N  I  *  C  P  T  Q  S  W  T  N  C  G  A  L  Q  :  C  R  Y  W  *  D  W  N  I  L  C  N  P  *  Y  H  P  K  N  I  G  W  R  *  V  C  S  R  S  S  *  H  N  N  H  F  *  V  S  A  N  W  D  G  S  N  H   : G  A  I  P  L  L  L  *  C  R  Y  R  *  A  *  R  P  H  F  R  *  P  M  K  K  R  V  H  N   : A  T  G  S  S  L  L  Q  S  C  F  C  T  C  L  Q  M  R  R  N  R  T  I  I  C  S  E  E  A  N  Q  L  G  P  L  E  F  L  T  V  L  T  M  *  E  *  A  *  N  V  Q  N  I  V  C  C  I  S  V  W  K  Y  T  C  F  *  R  G  K  K  N  L  F  N  T  L  L  I  V  P  C  L  L  L  I  T :   K  N  V  Y  L  Y  I  E  R  F  K   </second_frame>
            <third_frame>   K  C  V  Q  R  K  Q  *  S  E  H  P  T  T  G  C  G  L  S  I  R  N  R  R  Q  I  S  A  M  A  T  A  G  K  L  V  S  S  S  S  S  S  P  K  P  F  D  F  S  D  D  S  V  P  K  R  V  V  L  S  S  D  Q  Q  R  Y  C  L  E  V  L  K  V  F  K  D  K  R  F  S  A  P  E  K  I  R  Q  E  F  M  T  L  Q  :  A  T  R  M  R  A  S  E  M  K  S  R  C  S  M  A  L  N  S  A  N  I  S  K  N  R  Y  T  D  V  L  P   : F  D  N  N  R  V  V  L  D  P  P  A  R  G  Y  I  N  A  S  F  I  K  :  I  S  E  D  V  S  Q  F  I  A  T  Q  G  P  L  Q  H  T  F  E  D  F  W  E  M  I  I  Q  H  R  C  P  V  I  V  M  L  T  Q  L  F  D  N  Y  K  :  I  V  K  C  G  D  Y  F  Q  A  D  G  G  P  R  R  F  G  N  I  C  I  V  T  K  W  I  K  T  T  Q  T  S  L  I  L  R  C  L  E  V  N  Y  I  E  :  S  T  E  P  P  L  C  V  L  H  I  Q  Y  P  D  W  P  D  H  G  V  P  K  D  T  L  A  V  R  E  I  L  K  Q  T  F  S  V  P  P  S  L  G  P  I  V  V  H  C  S :   A  G  I  G  R  T  G  T  Y  C  A  I  H  N  T  I  Q  R  I  L  G  G  D  K  S  A  L  D  L  V  N  T  I  T  I  F  R  S  Q  R  I  G  M  V  Q  T  M  :  E  Q  Y  L  F  C  Y  D  A  V  I  D  E  L  E  D  L  I  S  D  S  Q  *  R  R  E  F  I  M  :  Q  L  V  L  P  C  C  N  H  A  S  V  L  A  Y  K  *  E  E  I  E  Q  *  F  V  L  K  K  Q  I  S  W  V  H  L  S  F  L  L  F  L  P  C  R  N  K  H  K  T  C  K  I  S  Y  V  V  F  L  F  G  S  I  H  A  F  R  E  G  K  R  T  Y  L  T  H  S  *  S  Y  P  A  Y  C  *  L   : Q  K  M  Y  I  Y  T  *  K  D  L  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89737" stop="89483"/>
                    <exon start="86605" stop="86509"/>
                    <exon start="86416" stop="86352"/>
                    <exon start="86222" stop="86088"/>
                    <exon start="84232" stop="84098"/>
                    <exon start="82775" stop="82627"/>
                    <exon start="82533" stop="82392"/>
                    <exon start="82059" stop="81991"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1044</number_coding_nucleotides>
                  <number_encoded_amino_acids>348</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SEHPTTGCGLSIRNRRQISAMATAGKLVSSSSSSPKPFDFSDDSVPKRVVLSSDQQRYCLEVLKVFKDKRFSAPEKIRQEFMTLQATRMRASEMKSRCSMALNSANISKNRYTDVLPFDNNRVVLDPPARGYINASFIKISEDVSQFIATQGPLQHTFEDFWEMIIQHRCPVIVMLTQLFDNYKIVKCGDYFQADGGPRRFGNICIVTKWIKTTQTSLILRCLEVNYIESTEPPLCVLHIQYPDWPDHGVPKDTLAVREILKQTFSVPPSLGPIVVHCSAGIGRTGTYCAIHNTIQRILGGDKSALDLVNTITIFRSQRIGMVQTMEQYLFCYDAVIDELEDLISDSQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="89763" e_stop="89483"/>
            <exon e_start="86605" e_stop="86509"/>
            <exon e_start="86416" e_stop="86352"/>
            <exon e_start="86222" e_stop="86088"/>
            <exon e_start="84232" e_stop="84098"/>
            <exon e_start="82775" e_stop="82627"/>
            <exon e_start="82533" e_stop="82392"/>
            <exon e_start="82059" e_stop="81973"/>
            <exon e_start="81907" e_stop="81818"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.637" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.829" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.834" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.857" acc_prob="0.116" e_score="1.000"/>
          <exon-intron don_prob="0.914" acc_prob="0.910" e_score="1.000"/>
          <exon-intron don_prob="0.915" acc_prob="0.987" e_score="0.972"/>
          <exon-intron don_prob="0.994" acc_prob="0.000" e_score="0.966"/>
          <exon-only e_score="0.833"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="89763" e_stop="89483" e_length="281"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.637">
            <gDNA_intron_boundary i_start="89482" i_stop="86606" i_length="2877"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86605" e_stop="86509" e_length="97"/>
          </exon>
          <intron i_serial="2" don_prob="0.966" acc_prob="0.829">
            <gDNA_intron_boundary i_start="86508" i_stop="86417" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="86416" e_stop="86352" e_length="65"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.986">
            <gDNA_intron_boundary i_start="86351" i_stop="86223" i_length="129"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="86222" e_stop="86088" e_length="135"/>
          </exon>
          <intron i_serial="4" don_prob="0.834" acc_prob="0.993">
            <gDNA_intron_boundary i_start="86087" i_stop="84233" i_length="1855"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="84232" e_stop="84098" e_length="135"/>
          </exon>
          <intron i_serial="5" don_prob="0.857" acc_prob="0.116">
            <gDNA_intron_boundary i_start="84097" i_stop="82776" i_length="1322"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="82775" e_stop="82627" e_length="149"/>
          </exon>
          <intron i_serial="6" don_prob="0.914" acc_prob="0.910">
            <gDNA_intron_boundary i_start="82626" i_stop="82534" i_length="93"/>
          </intron>
          <exon e_serial="7" e_score="0.972">
            <gDNA_exon_boundary e_start="82533" e_stop="82392" e_length="142"/>
          </exon>
          <intron i_serial="7" don_prob="0.915" acc_prob="0.987">
            <gDNA_intron_boundary i_start="82391" i_stop="82060" i_length="332"/>
          </intron>
          <exon e_serial="8" e_score="0.966">
            <gDNA_exon_boundary e_start="82059" e_stop="81973" e_length="87"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="0.000">
            <gDNA_intron_boundary i_start="81972" i_stop="81908" i_length="65"/>
          </intron>
          <exon e_serial="9" e_score="0.833">
            <gDNA_exon_boundary e_start="81907" e_stop="81818" e_length="90"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89763" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89763" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89754" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89747" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89746" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84098"/>
              <exon start="82775" stop="82674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89744" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216892" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89741" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84098"/>
              <exon start="82775" stop="82679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89740" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89735" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84098"/>
              <exon start="82775" stop="82680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89732" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89725" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84098"/>
              <exon start="82775" stop="82732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89723" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89721" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89715" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89713" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84098"/>
              <exon start="82775" stop="82683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89701" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89700" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89658" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86556" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86140" stop="86088"/>
              <exon start="84232" stop="84098"/>
              <exon start="82775" stop="82627"/>
              <exon start="82533" stop="82424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84149" stop="84098"/>
              <exon start="82775" stop="82627"/>
              <exon start="82533" stop="82392"/>
              <exon start="82059" stop="81973"/>
              <exon start="81907" stop="81818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620377" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAGTGCGTACAAAGAAAGCAGTGAAGTGAACATCCTACCACGGGGTGCGGACTGTCCATTCGGAATCGGAGGCAGATATCAGCGATGGCCACCGCCGGTAAACTCGTGTCGTCGTCGTCGTCGTCACCCAAGCCTTTCGATTTCTCCGACGATTCAGTTCCTAAGAGAGTCGTTCTGTCGAGTGATCAGCAGCGTTATTGCTTGGAAGTACTCAAAGTCTTCAAGGACAAGAGGTTTTCTGCTCCCGAAAAAATCCGCCAAGAGTTCATGACGTTGCAG : GCAACTAGGATGAGAGCTTCAGAAATGAAAAGTAGATGCTCAATGGCTTTGAACAGCGCAAACATTAGCAAAAATCGATACACTGATGTTCTGCCAT : TTGACAATAACAGGGTTGTTTTGGACCCACCAGCTAGAGGATATATAAATGCAAGCTTCATTAAG : ATATCTGAAGACGTGTCTCAGTTTATTGCAACACAAGGTCCTCTACAACACACTTTTGAAGACTTCTGGGAAATGATAATCCAGCATCGCTGTCCTGTGATTGTGATGCTTACACAATTGTTTGACAACTACAAG : ATTGTCAAGTGTGGGGATTATTTTCAGGCAGATGGTGGTCCCAGAAGATTTGGCAATATATGTATTGTTACGAAGTGGATAAAGACGACTCAGACTTCATTGATTTTGCGATGTCTGGAGGTGAACTATATTGAG : TCAACAGAACCACCTTTGTGTGTTTTACACATTCAATATCCCGACTGGCCTGACCATGGAGTTCCAAAGGACACTCTTGCTGTTCGTGAAATACTGAAACAAACATTTAGTGTCCCACCCAGTCTTGGACCAATTGTGGTGCACTGCAG : TGCAGGTATTGGTAGGACTGGAACATACTGTGCAATCCATAATACCATCCAAAGAATATTGGGTGGAGATAAGTCTGCTCTAGATCTAGTTAACACAATAACCATTTTTAGGTCTCAGCGAATTGGGATGGTTCAAACCATG : GAGCAATACCTCTTTTGCTATGATGCCGTTATCGATGAGCTTGAAGACCTCATTTCAGATAGCCAATGAAGAAGAGAGTTCATAATG : TGTATTCCAGCAACTGGTTCTTCCTTGCTGCAATCATGCTTCTGTACTTGCTTACAAATGAGAAGAAATAGAACAATAATTTGTTCTGAA</gDNA_template>
            <first_frame> E  S  A  Y  K  E  S  S  E  V  N  I  L  P  R  G  A  D  C  P  F  G  I  G  G  R  Y  Q  R  W  P  P  P  V  N  S  C  R  R  R  R  R  H  P  S  L  S  I  S  P  T  I  Q  F  L  R  E  S  F  C  R  V  I  S  S  V  I  A  W  K  Y  S  K  S  S  R  T  R  G  F  L  L  P  K  K  S  A  K  S  S  *  R  C  R :   Q  L  G  *  E  L  Q  K  *  K  V  D  A  Q  W  L  *  T  A  Q  T  L  A  K  I  D  T  L  M  F  C  H  :  L  T  I  T  G  L  F  W  T  H  Q  L  E  D  I  *  M  Q  A  S  L  R :   Y  L  K  T  C  L  S  L  L  Q  H  K  V  L  Y  N  T  L  L  K  T  S  G  K  *  *  S  S  I  A  V  L  *  L  *  C  L  H  N  C  L  T  T  T  R :   L  S  S  V  G  I  I  F  R  Q  M  V  V  P  E  D  L  A  I  Y  V  L  L  R  S  G  *  R  R  L  R  L  H  *  F  C  D  V  W  R  *  T  I  L  S :   Q  Q  N  H  L  C  V  F  Y  T  F  N  I  P  T  G  L  T  M  E  F  Q  R  T  L  L  L  F  V  K  Y  *  N  K  H  L  V  S  H  P  V  L  D  Q  L  W  C  T  A   : V  Q  V  L  V  G  L  E  H  T  V  Q  S  I  I  P  S  K  E  Y  W  V  E  I  S  L  L  *  I  *  L  T  Q  *  P  F  L  G  L  S  E  L  G  W  F  K  P  W :   S  N  T  S  F  A  M  M  P  L  S  M  S  L  K  T  S  F  Q  I  A  N  E  E  E  S  S  *  C :   V  F  Q  Q  L  V  L  P  C  C  N  H  A  S  V  L  A  Y  K  *  E  E  I  E  Q  *  F  V  L   </first_frame>
            <second_frame>  K  V  R  T  K  K  A  V  K  *  T  S  Y  H  G  V  R  T  V  H  S  E  S  E  A  D  I  S  D  G  H  R  R  *  T  R  V  V  V  V  V  V  T  Q  A  F  R  F  L  R  R  F  S  S  *  E  S  R  S  V  E  *  S  A  A  L  L  L  G  S  T  Q  S  L  Q  G  Q  E  V  F  C  S  R  K  N  P  P  R  V  H  D  V  A   : G  N  *  D  E  S  F  R  N  E  K  *  M  L  N  G  F  E  Q  R  K  H  *  Q  K  S  I  H  *  C  S  A  I :   *  Q  *  Q  G  C  F  G  P  T  S  *  R  I  Y  K  C  K  L  H  *   : D  I  *  R  R  V  S  V  Y  C  N  T  R  S  S  T  T  H  F  *  R  L  L  G  N  D  N  P  A  S  L  S  C  D  C  D  A  Y  T  I  V  *  Q  L  Q   : D  C  Q  V  W  G  L  F  S  G  R  W  W  S  Q  K  I  W  Q  Y  M  Y  C  Y  E  V  D  K  D  D  S  D  F  I  D  F  A  M  S  G  G  E  L  Y  *   : V  N  R  T  T  F  V  C  F  T  H  S  I  S  R  L  A  *  P  W  S  S  K  G  H  S  C  C  S  *  N  T  E  T  N  I  *  C  P  T  Q  S  W  T  N  C  G  A  L  Q  :  C  R  Y  W  *  D  W  N  I  L  C  N  P  *  Y  H  P  K  N  I  G  W  R  *  V  C  S  R  S  S  *  H  N  N  H  F  *  V  S  A  N  W  D  G  S  N  H   : G  A  I  P  L  L  L  *  C  R  Y  R  *  A  *  R  P  H  F  R  *  P  M  K  K  R  V  H  N   : V  Y  S  S  N  W  F  F  L  A  A  I  M  L  L  Y  L  L  T  N  E  K  K  *  N  N  N  L  F  *  </second_frame>
            <third_frame>   K  C  V  Q  R  K  Q  *  S  E  H  P  T  T  G  C  G  L  S  I  R  N  R  R  Q  I  S  A  M  A  T  A  G  K  L  V  S  S  S  S  S  S  P  K  P  F  D  F  S  D  D  S  V  P  K  R  V  V  L  S  S  D  Q  Q  R  Y  C  L  E  V  L  K  V  F  K  D  K  R  F  S  A  P  E  K  I  R  Q  E  F  M  T  L  Q  :  A  T  R  M  R  A  S  E  M  K  S  R  C  S  M  A  L  N  S  A  N  I  S  K  N  R  Y  T  D  V  L  P   : F  D  N  N  R  V  V  L  D  P  P  A  R  G  Y  I  N  A  S  F  I  K  :  I  S  E  D  V  S  Q  F  I  A  T  Q  G  P  L  Q  H  T  F  E  D  F  W  E  M  I  I  Q  H  R  C  P  V  I  V  M  L  T  Q  L  F  D  N  Y  K  :  I  V  K  C  G  D  Y  F  Q  A  D  G  G  P  R  R  F  G  N  I  C  I  V  T  K  W  I  K  T  T  Q  T  S  L  I  L  R  C  L  E  V  N  Y  I  E  :  S  T  E  P  P  L  C  V  L  H  I  Q  Y  P  D  W  P  D  H  G  V  P  K  D  T  L  A  V  R  E  I  L  K  Q  T  F  S  V  P  P  S  L  G  P  I  V  V  H  C  S :   A  G  I  G  R  T  G  T  Y  C  A  I  H  N  T  I  Q  R  I  L  G  G  D  K  S  A  L  D  L  V  N  T  I  T  I  F  R  S  Q  R  I  G  M  V  Q  T  M  :  E  Q  Y  L  F  C  Y  D  A  V  I  D  E  L  E  D  L  I  S  D  S  Q  *  R  R  E  F  I  M  :  C  I  P  A  T  G  S  S  L  L  Q  S  C  F  C  T  C  L  Q  M  R  R  N  R  T  I  I  C  S  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89737" stop="89483"/>
                    <exon start="86605" stop="86509"/>
                    <exon start="86416" stop="86352"/>
                    <exon start="86222" stop="86088"/>
                    <exon start="84232" stop="84098"/>
                    <exon start="82775" stop="82627"/>
                    <exon start="82533" stop="82392"/>
                    <exon start="82059" stop="81991"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1044</number_coding_nucleotides>
                  <number_encoded_amino_acids>348</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SEHPTTGCGLSIRNRRQISAMATAGKLVSSSSSSPKPFDFSDDSVPKRVVLSSDQQRYCLEVLKVFKDKRFSAPEKIRQEFMTLQATRMRASEMKSRCSMALNSANISKNRYTDVLPFDNNRVVLDPPARGYINASFIKISEDVSQFIATQGPLQHTFEDFWEMIIQHRCPVIVMLTQLFDNYKIVKCGDYFQADGGPRRFGNICIVTKWIKTTQTSLILRCLEVNYIESTEPPLCVLHIQYPDWPDHGVPKDTLAVREILKQTFSVPPSLGPIVVHCSAGIGRTGTYCAIHNTIQRILGGDKSALDLVNTITIFRSQRIGMVQTMEQYLFCYDAVIDELEDLISDSQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="89763" e_stop="89483"/>
            <exon e_start="86605" e_stop="86509"/>
            <exon e_start="86416" e_stop="86352"/>
            <exon e_start="86222" e_stop="86088"/>
            <exon e_start="84232" e_stop="84098"/>
            <exon e_start="82059" e_stop="81973"/>
            <exon e_start="81897" e_stop="81599"/>
            <exon e_start="81373" e_stop="81358"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.637" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.829" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.834" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.857" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.843" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.545" e_score="0.990"/>
          <exon-only e_score="0.562"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="89763" e_stop="89483" e_length="281"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.637">
            <gDNA_intron_boundary i_start="89482" i_stop="86606" i_length="2877"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86605" e_stop="86509" e_length="97"/>
          </exon>
          <intron i_serial="2" don_prob="0.966" acc_prob="0.829">
            <gDNA_intron_boundary i_start="86508" i_stop="86417" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="86416" e_stop="86352" e_length="65"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.986">
            <gDNA_intron_boundary i_start="86351" i_stop="86223" i_length="129"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="86222" e_stop="86088" e_length="135"/>
          </exon>
          <intron i_serial="4" don_prob="0.834" acc_prob="0.993">
            <gDNA_intron_boundary i_start="86087" i_stop="84233" i_length="1855"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="84232" e_stop="84098" e_length="135"/>
          </exon>
          <intron i_serial="5" don_prob="0.857" acc_prob="0.987">
            <gDNA_intron_boundary i_start="84097" i_stop="82060" i_length="2038"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="82059" e_stop="81973" e_length="87"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.843">
            <gDNA_intron_boundary i_start="81972" i_stop="81898" i_length="75"/>
          </intron>
          <exon e_serial="7" e_score="0.990">
            <gDNA_exon_boundary e_start="81897" e_stop="81599" e_length="299"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.545">
            <gDNA_intron_boundary i_start="81598" i_stop="81374" i_length="225"/>
          </intron>
          <exon e_serial="8" e_score="0.562">
            <gDNA_exon_boundary e_start="81373" e_stop="81358" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89763" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89763" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89754" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89747" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89744" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216892" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89740" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89732" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89723" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89721" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89715" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89701" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89700" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89658" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89513" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
              <exon start="84232" stop="84098"/>
              <exon start="82059" stop="82040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86556" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82049" stop="81973"/>
              <exon start="81897" stop="81599"/>
              <exon start="81373" stop="81358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216865" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAGTGCGTACAAAGAAAGCAGTGAAGTGAACATCCTACCACGGGGTGCGGACTGTCCATTCGGAATCGGAGGCAGATATCAGCGATGGCCACCGCCGGTAAACTCGTGTCGTCGTCGTCGTCGTCACCCAAGCCTTTCGATTTCTCCGACGATTCAGTTCCTAAGAGAGTCGTTCTGTCGAGTGATCAGCAGCGTTATTGCTTGGAAGTACTCAAAGTCTTCAAGGACAAGAGGTTTTCTGCTCCCGAAAAAATCCGCCAAGAGTTCATGACGTTGCAG : GCAACTAGGATGAGAGCTTCAGAAATGAAAAGTAGATGCTCAATGGCTTTGAACAGCGCAAACATTAGCAAAAATCGATACACTGATGTTCTGCCAT : TTGACAATAACAGGGTTGTTTTGGACCCACCAGCTAGAGGATATATAAATGCAAGCTTCATTAAG : ATATCTGAAGACGTGTCTCAGTTTATTGCAACACAAGGTCCTCTACAACACACTTTTGAAGACTTCTGGGAAATGATAATCCAGCATCGCTGTCCTGTGATTGTGATGCTTACACAATTGTTTGACAACTACAAG : ATTGTCAAGTGTGGGGATTATTTTCAGGCAGATGGTGGTCCCAGAAGATTTGGCAATATATGTATTGTTACGAAGTGGATAAAGACGACTCAGACTTCATTGATTTTGCGATGTCTGGAGGTGAACTATATTGAG : GAGCAATACCTCTTTTGCTATGATGCCGTTATCGATGAGCTTGAAGACCTCATTTCAGATAGCCAATGAAGAAGAGAGTTCATAATG : CAACTGGTTCTTCCTTGCTGCAATCATGCTTCTGTACTTGCTTACAAATGAGAAGAAATAGAACAATAATTTGTTCTGAAGAAGCAAATCAGTTGGGTCCACTTGAGTTTCTTACTGTTCTTACCATGTAGGAATAAGCATAAAACGTGCAAAATATCGTATGTTGTATTTCTGTTTGGAAGTATACATGCTTTTAGAGAGGGAAAAAGAACTTATTTAACACACTCTTAATCGTACCCTGCTTATTGTTGATTACATGTATGGTAAGTTGATGATGTTCAAGGTAGCTTTTACACCAA : TTGTGAACAAAAACAA</gDNA_template>
            <first_frame> E  S  A  Y  K  E  S  S  E  V  N  I  L  P  R  G  A  D  C  P  F  G  I  G  G  R  Y  Q  R  W  P  P  P  V  N  S  C  R  R  R  R  R  H  P  S  L  S  I  S  P  T  I  Q  F  L  R  E  S  F  C  R  V  I  S  S  V  I  A  W  K  Y  S  K  S  S  R  T  R  G  F  L  L  P  K  K  S  A  K  S  S  *  R  C  R :   Q  L  G  *  E  L  Q  K  *  K  V  D  A  Q  W  L  *  T  A  Q  T  L  A  K  I  D  T  L  M  F  C  H  :  L  T  I  T  G  L  F  W  T  H  Q  L  E  D  I  *  M  Q  A  S  L  R :   Y  L  K  T  C  L  S  L  L  Q  H  K  V  L  Y  N  T  L  L  K  T  S  G  K  *  *  S  S  I  A  V  L  *  L  *  C  L  H  N  C  L  T  T  T  R :   L  S  S  V  G  I  I  F  R  Q  M  V  V  P  E  D  L  A  I  Y  V  L  L  R  S  G  *  R  R  L  R  L  H  *  F  C  D  V  W  R  *  T  I  L  R :   S  N  T  S  F  A  M  M  P  L  S  M  S  L  K  T  S  F  Q  I  A  N  E  E  E  S  S  *  C :   N  W  F  F  L  A  A  I  M  L  L  Y  L  L  T  N  E  K  K  *  N  N  N  L  F  *  R  S  K  S  V  G  S  T  *  V  S  Y  C  S  Y  H  V  G  I  S  I  K  R  A  K  Y  R  M  L  Y  F  C  L  E  V  Y  M  L  L  E  R  E  K  E  L  I  *  H  T  L  N  R  T  L  L  I  V  D  Y  M  Y  G  K  L  M  M  F  K  V  A  F  T  P   : I  V  N  K  N   </first_frame>
            <second_frame>  K  V  R  T  K  K  A  V  K  *  T  S  Y  H  G  V  R  T  V  H  S  E  S  E  A  D  I  S  D  G  H  R  R  *  T  R  V  V  V  V  V  V  T  Q  A  F  R  F  L  R  R  F  S  S  *  E  S  R  S  V  E  *  S  A  A  L  L  L  G  S  T  Q  S  L  Q  G  Q  E  V  F  C  S  R  K  N  P  P  R  V  H  D  V  A   : G  N  *  D  E  S  F  R  N  E  K  *  M  L  N  G  F  E  Q  R  K  H  *  Q  K  S  I  H  *  C  S  A  I :   *  Q  *  Q  G  C  F  G  P  T  S  *  R  I  Y  K  C  K  L  H  *   : D  I  *  R  R  V  S  V  Y  C  N  T  R  S  S  T  T  H  F  *  R  L  L  G  N  D  N  P  A  S  L  S  C  D  C  D  A  Y  T  I  V  *  Q  L  Q   : D  C  Q  V  W  G  L  F  S  G  R  W  W  S  Q  K  I  W  Q  Y  M  Y  C  Y  E  V  D  K  D  D  S  D  F  I  D  F  A  M  S  G  G  E  L  Y  *   : G  A  I  P  L  L  L  *  C  R  Y  R  *  A  *  R  P  H  F  R  *  P  M  K  K  R  V  H  N   : A  T  G  S  S  L  L  Q  S  C  F  C  T  C  L  Q  M  R  R  N  R  T  I  I  C  S  E  E  A  N  Q  L  G  P  L  E  F  L  T  V  L  T  M  *  E  *  A  *  N  V  Q  N  I  V  C  C  I  S  V  W  K  Y  T  C  F  *  R  G  K  K  N  L  F  N  T  L  L  I  V  P  C  L  L  L  I  T  C  M  V  S  *  *  C  S  R  *  L  L  H  Q  :  L  *  T  K  T  </second_frame>
            <third_frame>   K  C  V  Q  R  K  Q  *  S  E  H  P  T  T  G  C  G  L  S  I  R  N  R  R  Q  I  S  A  M  A  T  A  G  K  L  V  S  S  S  S  S  S  P  K  P  F  D  F  S  D  D  S  V  P  K  R  V  V  L  S  S  D  Q  Q  R  Y  C  L  E  V  L  K  V  F  K  D  K  R  F  S  A  P  E  K  I  R  Q  E  F  M  T  L  Q  :  A  T  R  M  R  A  S  E  M  K  S  R  C  S  M  A  L  N  S  A  N  I  S  K  N  R  Y  T  D  V  L  P   : F  D  N  N  R  V  V  L  D  P  P  A  R  G  Y  I  N  A  S  F  I  K  :  I  S  E  D  V  S  Q  F  I  A  T  Q  G  P  L  Q  H  T  F  E  D  F  W  E  M  I  I  Q  H  R  C  P  V  I  V  M  L  T  Q  L  F  D  N  Y  K  :  I  V  K  C  G  D  Y  F  Q  A  D  G  G  P  R  R  F  G  N  I  C  I  V  T  K  W  I  K  T  T  Q  T  S  L  I  L  R  C  L  E  V  N  Y  I  E  :  E  Q  Y  L  F  C  Y  D  A  V  I  D  E  L  E  D  L  I  S  D  S  Q  *  R  R  E  F  I  M  :  Q  L  V  L  P  C  C  N  H  A  S  V  L  A  Y  K  *  E  E  I  E  Q  *  F  V  L  K  K  Q  I  S  W  V  H  L  S  F  L  L  F  L  P  C  R  N  K  H  K  T  C  K  I  S  Y  V  V  F  L  F  G  S  I  H  A  F  R  E  G  K  R  T  Y  L  T  H  S  *  S  Y  P  A  Y  C  *  L  H  V  W  *  V  D  D  V  Q  G  S  F  Y  T  N :   C  E  Q  K  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89737" stop="89483"/>
                    <exon start="86605" stop="86509"/>
                    <exon start="86416" stop="86352"/>
                    <exon start="86222" stop="86088"/>
                    <exon start="84232" stop="84098"/>
                    <exon start="82059" stop="81991"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>753</number_coding_nucleotides>
                  <number_encoded_amino_acids>251</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SEHPTTGCGLSIRNRRQISAMATAGKLVSSSSSSPKPFDFSDDSVPKRVVLSSDQQRYCLEVLKVFKDKRFSAPEKIRQEFMTLQATRMRASEMKSRCSMALNSANISKNRYTDVLPFDNNRVVLDPPARGYINASFIKISEDVSQFIATQGPLQHTFEDFWEMIIQHRCPVIVMLTQLFDNYKIVKCGDYFQADGGPRRFGNICIVTKWIKTTQTSLILRCLEVNYIEEQYLFCYDAVIDELEDLISDSQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="89765" e_stop="89483"/>
            <exon e_start="86605" e_stop="86509"/>
            <exon e_start="86416" e_stop="86352"/>
            <exon e_start="86222" e_stop="85929"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.637" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.829" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="89765" e_stop="89483" e_length="283"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.637">
            <gDNA_intron_boundary i_start="89482" i_stop="86606" i_length="2877"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86605" e_stop="86509" e_length="97"/>
          </exon>
          <intron i_serial="2" don_prob="0.966" acc_prob="0.829">
            <gDNA_intron_boundary i_start="86508" i_stop="86417" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="86416" e_stop="86352" e_length="65"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.986">
            <gDNA_intron_boundary i_start="86351" i_stop="86223" i_length="129"/>
          </intron>
          <exon e_serial="4" e_score="0.986">
            <gDNA_exon_boundary e_start="86222" e_stop="85929" e_length="294"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89765" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="85929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89763" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89763" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89754" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89744" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216892" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89732" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89721" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89701" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89700" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89658" stop="89483"/>
              <exon start="86605" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86556" stop="86509"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="86088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200635" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="7" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGAAAGTGCGTACAAAGAAAGCAGTGAAGTGAACATCCTACCACGGGGTGCGGACTGTCCATTCGGAATCGGAGGCAGATATCAGCGATGGCCACCGCCGGTAAACTCGTGTCGTCGTCGTCGTCGTCACCCAAGCCTTTCGATTTCTCCGACGATTCAGTTCCTAAGAGAGTCGTTCTGTCGAGTGATCAGCAGCGTTATTGCTTGGAAGTACTCAAAGTCTTCAAGGACAAGAGGTTTTCTGCTCCCGAAAAAATCCGCCAAGAGTTCATGACGTTGCAG : GCAACTAGGATGAGAGCTTCAGAAATGAAAAGTAGATGCTCAATGGCTTTGAACAGCGCAAACATTAGCAAAAATCGATACACTGATGTTCTGCCAT : TTGACAATAACAGGGTTGTTTTGGACCCACCAGCTAGAGGATATATAAATGCAAGCTTCATTAAG : ATATCTGAAGACGTGTCTCAGTTTATTGCAACACAAGGTCCTCTACAACACACTTTTGAAGACTTCTGGGAAATGATAATCCAGCATCGCTGTCCTGTGATTGTGATGCTTACACAATTGTTTGACAACTACAAGGTATTCAACTGTTAAATTACGAGGTAAGCATTGTAATGTTAACAAGACAAGATATCTTGTTCTGTCATGTCACATGTGACAGAAAGAAAAAAATTGAGATTTTTTGTGACAAGGCTTCTGATCCAAAATTTGCTACCTAGGTAAAATTCTAACTTTTCT</gDNA_template>
            <first_frame> L  K  V  R  T  K  K  A  V  K  *  T  S  Y  H  G  V  R  T  V  H  S  E  S  E  A  D  I  S  D  G  H  R  R  *  T  R  V  V  V  V  V  V  T  Q  A  F  R  F  L  R  R  F  S  S  *  E  S  R  S  V  E  *  S  A  A  L  L  L  G  S  T  Q  S  L  Q  G  Q  E  V  F  C  S  R  K  N  P  P  R  V  H  D  V  A   : G  N  *  D  E  S  F  R  N  E  K  *  M  L  N  G  F  E  Q  R  K  H  *  Q  K  S  I  H  *  C  S  A  I :   *  Q  *  Q  G  C  F  G  P  T  S  *  R  I  Y  K  C  K  L  H  *   : D  I  *  R  R  V  S  V  Y  C  N  T  R  S  S  T  T  H  F  *  R  L  L  G  N  D  N  P  A  S  L  S  C  D  C  D  A  Y  T  I  V  *  Q  L  Q  G  I  Q  L  L  N  Y  E  V  S  I  V  M  L  T  R  Q  D  I  L  F  C  H  V  T  C  D  R  K  K  K  I  E  I  F  C  D  K  A  S  D  P  K  F  A  T  *  V  K  F  *  L  F  </first_frame>
            <second_frame>  *  K  C  V  Q  R  K  Q  *  S  E  H  P  T  T  G  C  G  L  S  I  R  N  R  R  Q  I  S  A  M  A  T  A  G  K  L  V  S  S  S  S  S  S  P  K  P  F  D  F  S  D  D  S  V  P  K  R  V  V  L  S  S  D  Q  Q  R  Y  C  L  E  V  L  K  V  F  K  D  K  R  F  S  A  P  E  K  I  R  Q  E  F  M  T  L  Q  :  A  T  R  M  R  A  S  E  M  K  S  R  C  S  M  A  L  N  S  A  N  I  S  K  N  R  Y  T  D  V  L  P   : F  D  N  N  R  V  V  L  D  P  P  A  R  G  Y  I  N  A  S  F  I  K  :  I  S  E  D  V  S  Q  F  I  A  T  Q  G  P  L  Q  H  T  F  E  D  F  W  E  M  I  I  Q  H  R  C  P  V  I  V  M  L  T  Q  L  F  D  N  Y  K  V  F  N  C  *  I  T  R  *  A  L  *  C  *  Q  D  K  I  S  C  S  V  M  S  H  V  T  E  R  K  K  L  R  F  F  V  T  R  L  L  I  Q  N  L  L  P  R  *  N  S  N  F  S </second_frame>
            <third_frame>   E  S  A  Y  K  E  S  S  E  V  N  I  L  P  R  G  A  D  C  P  F  G  I  G  G  R  Y  Q  R  W  P  P  P  V  N  S  C  R  R  R  R  R  H  P  S  L  S  I  S  P  T  I  Q  F  L  R  E  S  F  C  R  V  I  S  S  V  I  A  W  K  Y  S  K  S  S  R  T  R  G  F  L  L  P  K  K  S  A  K  S  S  *  R  C  R :   Q  L  G  *  E  L  Q  K  *  K  V  D  A  Q  W  L  *  T  A  Q  T  L  A  K  I  D  T  L  M  F  C  H  :  L  T  I  T  G  L  F  W  T  H  Q  L  E  D  I  *  M  Q  A  S  L  R :   Y  L  K  T  C  L  S  L  L  Q  H  K  V  L  Y  N  T  L  L  K  T  S  G  K  *  *  S  S  I  A  V  L  *  L  *  C  L  H  N  C  L  T  T  T  R  Y  S  T  V  K  L  R  G  K  H  C  N  V  N  K  T  R  Y  L  V  L  S  C  H  M  *  Q  K  E  K  N  *  D  F  L  *  Q  G  F  *  S  K  I  C  Y  L  G  K  I  L  T  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89737" stop="89483"/>
                    <exon start="86605" stop="86509"/>
                    <exon start="86416" stop="86352"/>
                    <exon start="86222" stop="86073"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>564</number_coding_nucleotides>
                  <number_encoded_amino_acids>188</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SEHPTTGCGLSIRNRRQISAMATAGKLVSSSSSSPKPFDFSDDSVPKRVVLSSDQQRYCLEVLKVFKDKRFSAPEKIRQEFMTLQATRMRASEMKSRCSMALNSANISKNRYTDVLPFDNNRVVLDPPARGYINASFIKISEDVSQFIATQGPLQHTFEDFWEMIIQHRCPVIVMLTQLFDNYKVFNC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="8">
          <exon_coordinates>
            <exon e_start="85204" e_stop="84260"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="85204" e_stop="84260" e_length="945"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85204" stop="84701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85012" stop="84351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84796" stop="84260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201537" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="8" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGAATTGGGCTCAATTGAGAATTCTCTTCAAATGGGTTAAGCTTGAATGGGTTGGGATTGAACCCATTTCAAATTATCTTGAGCCCAACCTTTAAAATTTTGTGCGGGTTGGCTGGGTTACCTATGTTTGATTTCATTTTTGACACCTATTTTACATCATCCTTTCTGGCCCTAATTCAAGCCGGAGGTTGTGGCTTTAAGGTCTGTTTAAATTTGATATAGTCATCACTGTCAATCTTTCTGCTAGTCATCACTCATCACTGGCAATCTTTCTGAGTAGGGAATGTTTCTCCTATAGACTATTTCAGAGCTTGGGCATATTTTGATGGAGTTGGTATAAGTAGACTTCTAGTGTGGTGCTTAAAGATATTATATGATCACTAGCTTGTGACTTCGTGATGAATATAAAGCTTGTAGGTGAATAACTTTTGCAGAAAATCAGCTTCTGTTGGGGAAGGTTCCAATTGAAGTTTATATTCCATCACGGGAAAAAGCCCTAGTTTTCCCTTCATATAAGCTTGGTAGATCATTTATCTATTTTTGTGGTCTTTCTCTAGTTTCAAAACTGTTATACTTGGATTTTGTTGGTTATTTAAACTGCAGAAGGATTAGCAAAGTCTAATGCAAAGGCCTGGCGGCTATTCTAGGATTGGAATTTGAGCTTAATAAGTTCTTCTTTCCCTTCTATCTTCCTAATACCCGATTAGCTGAGAAACAATTTCCTGGGCCAAATGGAAAAAAGGAAAATAAGAGACCTTGTTTCATGACCTTTATTCTGGATTATATTCAACTCTTCACACAAAGAGAGAGGCTACTAGTTTCCTTTCAATCACCCTGTATCACCTATTAACCTCTGAATGAATTTAAGCATTTATCTTAGTTGGTTTTTACTTCATTTGTAAGTGATTAAGCTGGTGATTGCGTCATTTTGACTATTTCATCTT</gDNA_template>
            <first_frame> L  N  W  A  Q  L  R  I  L  F  K  W  V  K  L  E  W  V  G  I  E  P  I  S  N  Y  L  E  P  N  L  *  N  F  V  R  V  G  W  V  T  Y  V  *  F  H  F  *  H  L  F  Y  I  I  L  S  G  P  N  S  S  R  R  L  W  L  *  G  L  F  K  F  D  I  V  I  T  V  N  L  S  A  S  H  H  S  S  L  A  I  F  L  S  R  E  C  F  S  Y  R  L  F  Q  S  L  G  I  F  *  W  S  W  Y  K  *  T  S  S  V  V  L  K  D  I  I  *  S  L  A  C  D  F  V  M  N  I  K  L  V  G  E  *  L  L  Q  K  I  S  F  C  W  G  R  F  Q  L  K  F  I  F  H  H  G  K  K  P  *  F  S  L  H  I  S  L  V  D  H  L  S  I  F  V  V  F  L  *  F  Q  N  C  Y  T  W  I  L  L  V  I  *  T  A  E  G  L  A  K  S  N  A  K  A  W  R  L  F  *  D  W  N  L  S  L  I  S  S  S  F  P  S  I  F  L  I  P  D  *  L  R  N  N  F  L  G  Q  M  E  K  R  K  I  R  D  L  V  S  *  P  L  F  W  I  I  F  N  S  S  H  K  E  R  G  Y  *  F  P  F  N  H  P  V  S  P  I  N  L  *  M  N  L  S  I  Y  L  S  W  F  L  L  H  L  *  V  I  K  L  V  I  A  S  F  *  L  F  H  L </first_frame>
            <second_frame>  *  I  G  L  N  *  E  F  S  S  N  G  L  S  L  N  G  L  G  L  N  P  F  Q  I  I  L  S  P  T  F  K  I  L  C  G  L  A  G  L  P  M  F  D  F  I  F  D  T  Y  F  T  S  S  F  L  A  L  I  Q  A  G  G  C  G  F  K  V  C  L  N  L  I  *  S  S  L  S  I  F  L  L  V  I  T  H  H  W  Q  S  F  *  V  G  N  V  S  P  I  D  Y  F  R  A  W  A  Y  F  D  G  V  G  I  S  R  L  L  V  W  C  L  K  I  L  Y  D  H  *  L  V  T  S  *  *  I  *  S  L  *  V  N  N  F  C  R  K  S  A  S  V  G  E  G  S  N  *  S  L  Y  S  I  T  G  K  S  P  S  F  P  F  I  *  A  W  *  I  I  Y  L  F  L  W  S  F  S  S  F  K  T  V  I  L  G  F  C  W  L  F  K  L  Q  K  D  *  Q  S  L  M  Q  R  P  G  G  Y  S  R  I  G  I  *  A  *  *  V  L  L  S  L  L  S  S  *  Y  P  I  S  *  E  T  I  S  W  A  K  W  K  K  G  K  *  E  T  L  F  H  D  L  Y  S  G  L  Y  S  T  L  H  T  K  R  E  A  T  S  F  L  S  I  T  L  Y  H  L  L  T  S  E  *  I  *  A  F  I  L  V  G  F  Y  F  I  C  K  *  L  S  W  *  L  R  H  F  D  Y  F  I   </second_frame>
            <third_frame>   E  L  G  S  I  E  N  S  L  Q  M  G  *  A  *  M  G  W  D  *  T  H  F  K  L  S  *  A  Q  P  L  K  F  C  A  G  W  L  G  Y  L  C  L  I  S  F  L  T  P  I  L  H  H  P  F  W  P  *  F  K  P  E  V  V  A  L  R  S  V  *  I  *  Y  S  H  H  C  Q  S  F  C  *  S  S  L  I  T  G  N  L  S  E  *  G  M  F  L  L  *  T  I  S  E  L  G  H  I  L  M  E  L  V  *  V  D  F  *  C  G  A  *  R  Y  Y  M  I  T  S  L  *  L  R  D  E  Y  K  A  C  R  *  I  T  F  A  E  N  Q  L  L  L  G  K  V  P  I  E  V  Y  I  P  S  R  E  K  A  L  V  F  P  S  Y  K  L  G  R  S  F  I  Y  F  C  G  L  S  L  V  S  K  L  L  Y  L  D  F  V  G  Y  L  N  C  R  R  I  S  K  V  *  C  K  G  L  A  A  I  L  G  L  E  F  E  L  N  K  F  F  F  P  F  Y  L  P  N  T  R  L  A  E  K  Q  F  P  G  P  N  G  K  K  E  N  K  R  P  C  F  M  T  F  I  L  D  Y  I  Q  L  F  T  Q  R  E  R  L  L  V  S  F  Q  S  P  C  I  T  Y  *  P  L  N  E  F  K  H  L  S  *  L  V  F  T  S  F  V  S  D  *  A  G  D  C  V  I  L  T  I  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="8" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84581" stop="84354"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CKGLAAILGLEFELNKFFFPFYLPNTRLAEKQFPGPNGKKENKRPCFMTFILDYIQLFTQRERLLVSFQSPCITY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="8" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85185" stop="84982"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EFSSNGLSLNGLGLNPFQIILSPTFKILCGLAGLPMFDFIFDTYFTSSFLALIQAGGCGFKVCLNLI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="8" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84782" stop="84582"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITFAENQLLLGKVPIEVYIPSREKALVFPSYKLGRSFIYFCGLSLVSKLLYLDFVGYLNCRRISKV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="9">
          <exon_coordinates>
            <exon e_start="83180" e_stop="82627"/>
            <exon e_start="82533" e_stop="82337"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.914" acc_prob="0.910" e_score="0.953"/>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="83180" e_stop="82627" e_length="554"/>
          </exon>
          <intron i_serial="1" don_prob="0.914" acc_prob="0.910">
            <gDNA_intron_boundary i_start="82626" i_stop="82534" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="0.931">
            <gDNA_exon_boundary e_start="82533" e_stop="82337" e_length="197"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83180" stop="82627"/>
              <exon start="82533" stop="82337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83180" stop="82627"/>
              <exon start="82533" stop="82346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425072" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="9" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCTAGTTTTTCTCTTGCCATGTGTAGTAGGTGGCAATAGACGACTTGTTTGCGTGAGAAGGCTCACAATTGGTACTACAGTCATTGCGGCAATCCCTTAGCGATCTCTTTCAAGTAATTCTGGCATTTTTATTGTTGGGAGTAAAGAAAAACTTCAGTCTTTCACTTTGCAGTATAAATGCTTTATTTCGTATTATGATATCAGAAATGTGGTTTCTTTAACCTTGTACTTTTAGTGGAATTACCTTTTGGCAATCTTGTAAGTAGTTCATACAATGGTATGTAATTGTGGCCCAATTCTCCCACTCACTTGTCATCCTTACATATAGTTAACACTAATTTCTTGCCCATATTATGAGGGAAATGGCAATAAATGTGTGATCTTTTCTCCTTGCTATTTGCCAGTCAACAGAACCACCTTTGTGTGTTTTACACATTCAATATCCCGACTGGCCTGACCATGGAGTTCCAAAGGACACTCTTGCTGTTCGTGAAATACTGAAACAAACATTTAGTGTCCCACCCAGTCTTGGACCAATTGTGGTGCACTGCAG : TGCAGGTATTGGTAGGACTGGAACATACTGTGCAATCCATAATACCATCCAAAGAATATTGGGTGGAGATAAGTCTGCTCTAGATCTAGTTAACACAATAACCATTTTTAGGTCTCAGCGAATTGGGATGGTTCAAACCATGGTACAACAGCTTCTCTTCGTTATTGAAATTGTGTAATACAACTAAAGCAGATAAC</gDNA_template>
            <first_frame> I  *  F  F  S  C  H  V  *  *  V  A  I  D  D  L  F  A  *  E  G  S  Q  L  V  L  Q  S  L  R  Q  S  L  S  D  L  F  Q  V  I  L  A  F  L  L  L  G  V  K  K  N  F  S  L  S  L  C  S  I  N  A  L  F  R  I  M  I  S  E  M  W  F  L  *  P  C  T  F  S  G  I  T  F  W  Q  S  C  K  *  F  I  Q  W  Y  V  I  V  A  Q  F  S  H  S  L  V  I  L  T  Y  S  *  H  *  F  L  A  H  I  M  R  E  M  A  I  N  V  *  S  F  L  L  A  I  C  Q  S  T  E  P  P  L  C  V  L  H  I  Q  Y  P  D  W  P  D  H  G  V  P  K  D  T  L  A  V  R  E  I  L  K  Q  T  F  S  V  P  P  S  L  G  P  I  V  V  H  C  S :   A  G  I  G  R  T  G  T  Y  C  A  I  H  N  T  I  Q  R  I  L  G  G  D  K  S  A  L  D  L  V  N  T  I  T  I  F  R  S  Q  R  I  G  M  V  Q  T  M  V  Q  Q  L  L  F  V  I  E  I  V  *  Y  N  *  S  R  *  </first_frame>
            <second_frame>  S  S  F  S  L  A  M  C  S  R  W  Q  *  T  T  C  L  R  E  K  A  H  N  W  Y  Y  S  H  C  G  N  P  L  A  I  S  F  K  *  F  W  H  F  Y  C  W  E  *  R  K  T  S  V  F  H  F  A  V  *  M  L  Y  F  V  L  *  Y  Q  K  C  G  F  F  N  L  V  L  L  V  E  L  P  F  G  N  L  V  S  S  S  Y  N  G  M  *  L  W  P  N  S  P  T  H  L  S  S  L  H  I  V  N  T  N  F  L  P  I  L  *  G  K  W  Q  *  M  C  D  L  F  S  L  L  F  A  S  Q  Q  N  H  L  C  V  F  Y  T  F  N  I  P  T  G  L  T  M  E  F  Q  R  T  L  L  L  F  V  K  Y  *  N  K  H  L  V  S  H  P  V  L  D  Q  L  W  C  T  A   : V  Q  V  L  V  G  L  E  H  T  V  Q  S  I  I  P  S  K  E  Y  W  V  E  I  S  L  L  *  I  *  L  T  Q  *  P  F  L  G  L  S  E  L  G  W  F  K  P  W  Y  N  S  F  S  S  L  L  K  L  C  N  T  T  K  A  D  N </second_frame>
            <third_frame>   L  V  F  L  L  P  C  V  V  G  G  N  R  R  L  V  C  V  R  R  L  T  I  G  T  T  V  I  A  A  I  P  *  R  S  L  S  S  N  S  G  I  F  I  V  G  S  K  E  K  L  Q  S  F  T  L  Q  Y  K  C  F  I  S  Y  Y  D  I  R  N  V  V  S  L  T  L  Y  F  *  W  N  Y  L  L  A  I  L  *  V  V  H  T  M  V  C  N  C  G  P  I  L  P  L  T  C  H  P  Y  I  *  L  T  L  I  S  C  P  Y  Y  E  G  N  G  N  K  C  V  I  F  S  P  C  Y  L  P  V  N  R  T  T  F  V  C  F  T  H  S  I  S  R  L  A  *  P  W  S  S  K  G  H  S  C  C  S  *  N  T  E  T  N  I  *  C  P  T  Q  S  W  T  N  C  G  A  L  Q  :  C  R  Y  W  *  D  W  N  I  L  C  N  P  *  Y  H  P  K  N  I  G  W  R  *  V  C  S  R  S  S  *  H  N  N  H  F  *  V  S  A  N  W  D  G  S  N  H  G  T  T  A  S  L  R  Y  *  N  C  V  I  Q  L  K  Q  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="9" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82799" stop="82627"/>
                    <exon start="82533" stop="82356"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFLLAICQSTEPPLCVLHIQYPDWPDHGVPKDTLAVREILKQTFSVPPSLGPIVVHCSAGIGRTGTYCAIHNTIQRILGGDKSALDLVNTITIFRSQRIGMVQTMVQQLLFVIEIV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="10">
          <exon_coordinates>
            <exon e_start="89707" e_stop="89483"/>
            <exon e_start="86416" e_stop="86352"/>
            <exon e_start="86222" e_stop="85869"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.829" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="89707" e_stop="89483" e_length="225"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.829">
            <gDNA_intron_boundary i_start="89482" i_stop="86417" i_length="3066"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86416" e_stop="86352" e_length="65"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.986">
            <gDNA_intron_boundary i_start="86351" i_stop="86223" i_length="129"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="86222" e_stop="85869" e_length="354"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89707" stop="89483"/>
              <exon start="86416" stop="86352"/>
              <exon start="86222" stop="85869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334329" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="10" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCATTCGGAATCGGAGGCAGATATCAGCGATGGCCACCGCCGGTAAACTCGTGTCGTCGTCGTCGTCGTCACCCAAGCCTTTCGATTTCTCCGACGATTCAGTTCCTAAGAGAGTCGTTCTGTCGAGTGATCAGCAGCGTTATTGCTTGGAAGTACTCAAAGTCTTCAAGGACAAGAGGTTTTCTGCTCCCGAAAAAATCCGCCAAGAGTTCATGACGTTGCAG : TTGACAATAACAGGGTTGTTTTGGACCCACCAGCTAGAGGATATATAAATGCAAGCTTCATTAAG : ATATCTGAAGACGTGTCTCAGTTTATTGCAACACAAGGTCCTCTACAACACACTTTTGAAGACTTCTGGGAAATGATAATCCAGCATCGCTGTCCTGTGATTGTGATGCTTACACAATTGTTTGACAACTACAAGGTATTCAACTGTTAAATTACGAGGTAAGCATTGTAATGTTAACAAGACAAGATATCTTGTTCTGTCATGTCACATGTGACAGAAAGAAAAAAATTGAGATTTTTTGTGACAAGGCTTCTGATCCAAAATTTGCTACCTAGGTAAAATTCTAACTTTTCTGCCTTTTTCATCTCTTGATTTTCATCCTCTGTTGTAATTAGATCTAGCATTTTTATACTT</gDNA_template>
            <first_frame> S  I  R  N  R  R  Q  I  S  A  M  A  T  A  G  K  L  V  S  S  S  S  S  S  P  K  P  F  D  F  S  D  D  S  V  P  K  R  V  V  L  S  S  D  Q  Q  R  Y  C  L  E  V  L  K  V  F  K  D  K  R  F  S  A  P  E  K  I  R  Q  E  F  M  T  L  Q  :  L  T  I  T  G  L  F  W  T  H  Q  L  E  D  I  *  M  Q  A  S  L  R :   Y  L  K  T  C  L  S  L  L  Q  H  K  V  L  Y  N  T  L  L  K  T  S  G  K  *  *  S  S  I  A  V  L  *  L  *  C  L  H  N  C  L  T  T  T  R  Y  S  T  V  K  L  R  G  K  H  C  N  V  N  K  T  R  Y  L  V  L  S  C  H  M  *  Q  K  E  K  N  *  D  F  L  *  Q  G  F  *  S  K  I  C  Y  L  G  K  I  L  T  F  L  P  F  S  S  L  D  F  H  P  L  L  *  L  D  L  A  F  L  Y   </first_frame>
            <second_frame>  P  F  G  I  G  G  R  Y  Q  R  W  P  P  P  V  N  S  C  R  R  R  R  R  H  P  S  L  S  I  S  P  T  I  Q  F  L  R  E  S  F  C  R  V  I  S  S  V  I  A  W  K  Y  S  K  S  S  R  T  R  G  F  L  L  P  K  K  S  A  K  S  S  *  R  C  S :   *  Q  *  Q  G  C  F  G  P  T  S  *  R  I  Y  K  C  K  L  H  *   : D  I  *  R  R  V  S  V  Y  C  N  T  R  S  S  T  T  H  F  *  R  L  L  G  N  D  N  P  A  S  L  S  C  D  C  D  A  Y  T  I  V  *  Q  L  Q  G  I  Q  L  L  N  Y  E  V  S  I  V  M  L  T  R  Q  D  I  L  F  C  H  V  T  C  D  R  K  K  K  I  E  I  F  C  D  K  A  S  D  P  K  F  A  T  *  V  K  F  *  L  F  C  L  F  H  L  L  I  F  I  L  C  C  N  *  I  *  H  F  Y  T  </second_frame>
            <third_frame>   H  S  E  S  E  A  D  I  S  D  G  H  R  R  *  T  R  V  V  V  V  V  V  T  Q  A  F  R  F  L  R  R  F  S  S  *  E  S  R  S  V  E  *  S  A  A  L  L  L  G  S  T  Q  S  L  Q  G  Q  E  V  F  C  S  R  K  N  P  P  R  V  H  D  V  A   : V  D  N  N  R  V  V  L  D  P  P  A  R  G  Y  I  N  A  S  F  I  K  :  I  S  E  D  V  S  Q  F  I  A  T  Q  G  P  L  Q  H  T  F  E  D  F  W  E  M  I  I  Q  H  R  C  P  V  I  V  M  L  T  Q  L  F  D  N  Y  K  V  F  N  C  *  I  T  R  *  A  L  *  C  *  Q  D  K  I  S  C  S  V  M  S  H  V  T  E  R  K  K  L  R  F  F  V  T  R  L  L  I  Q  N  L  L  P  R  *  N  S  N  F  S  A  F  F  I  S  *  F  S  S  S  V  V  I  R  S  S  I  F  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="10" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89576" stop="89483"/>
                    <exon start="86416" stop="86352"/>
                    <exon start="86222" stop="86073"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SAALLLGSTQSLQGQEVFCSRKNPPRVHDVAVDNNRVVLDPPARGYINASFIKISEDVSQFIATQGPLQHTFEDFWEMIIQHRCPVIVMLTQLFDNYKVFNC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="10" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89707" stop="89483"/>
                    <exon start="86416" stop="86369"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIRNRRQISAMATAGKLVSSSSSSPKPFDFSDDSVPKRVVLSSDQQRYCLEVLKVFKDKRFSAPEKIRQEFMTLQLTITGLFWTHQLEDI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="89749" PGL_stop="90632"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89749" e_stop="89751"/>
            <exon e_start="90301" e_stop="90632"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.531" e_score="1.000"/>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="89749" e_stop="89751" e_length="3"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.531">
            <gDNA_intron_boundary i_start="89752" i_stop="90300" i_length="549"/>
          </intron>
          <exon e_serial="2" e_score="0.910">
            <gDNA_exon_boundary e_start="90301" e_stop="90632" e_length="332"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89749" stop="89751"/>
              <exon start="90301" stop="90632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541332" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTT : GGGGATACAGTAAAAACAACAATATAATCTGGGTTCGACAGAAGCAATTCTTGTTTATTGCATTACAAAAATCATTTTTGAGTCACTTATCCCATGGCACTCACTCTATGTAAGGGAAGAGACAGAGAAAATGAAGACGAGGGGAAGGAACTACACTTCGAAAGAATCAAGAATAGCCTGTAGAGTTTTCTGTGATGATGCCCACTGTTTGTCATTGGCACTGACCACACAGAGGACAACTGTATTTCCCTTGGCCGTTGCCTTGGCTAGGTTGTGAGATCCAGTAAGAGCGTATGGAGTTTCAAGAACATACTTGTAATACTGCAAACACA</gDNA_template>
            <first_frame> F  :  G  D  T  V  K  T  T  I  *  S  G  F  D  R  S  N  S  C  L  L  H  Y  K  N  H  F  *  V  T  Y  P  M  A  L  T  L  C  K  G  R  D  R  E  N  E  D  E  G  K  E  L  H  F  E  R  I  K  N  S  L  *  S  F  L  *  *  C  P  L  F  V  I  G  T  D  H  T  E  D  N  C  I  S  L  G  R  C  L  G  *  V  V  R  S  S  K  S  V  W  S  F  K  N  I  L  V  I  L  Q  T   </first_frame>
            <second_frame>  L :   G  I  Q  *  K  Q  Q  Y  N  L  G  S  T  E  A  I  L  V  Y  C  I  T  K  I  I  F  E  S  L  I  P  W  H  S  L  Y  V  R  E  E  T  E  K  M  K  T  R  G  R  N  Y  T  S  K  E  S  R  I  A  C  R  V  F  C  D  D  A  H  C  L  S  L  A  L  T  T  Q  R  T  T  V  F  P  L  A  V  A  L  A  R  L  *  D  P  V  R  A  Y  G  V  S  R  T  Y  L  *  Y  C  K  H  </second_frame>
            <third_frame>    : W  G  Y  S  K  N  N  N  I  I  W  V  R  Q  K  Q  F  L  F  I  A  L  Q  K  S  F  L  S  H  L  S  H  G  T  H  S  M  *  G  K  R  Q  R  K  *  R  R  G  E  G  T  T  L  R  K  N  Q  E  *  P  V  E  F  S  V  M  M  P  T  V  C  H  W  H  *  P  H  R  G  Q  L  Y  F  P  W  P  L  P  W  L  G  C  E  I  Q  *  E  R  M  E  F  Q  E  H  T  C  N  T  A  N  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90314" stop="90577"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KQQYNLGSTEAILVYCITKIIFESLIPWHSLYVREETEKMKTRGRNYTSKESRIACRVFCDDAHCLSLALTTQRTTVFPLAVALARL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="92856" PGL_stop="89886"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92856" e_stop="92557"/>
            <exon e_start="91367" e_stop="91051"/>
            <exon e_start="90621" e_stop="90309"/>
            <exon e_start="89895" e_stop="89886"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.466" e_score="0.984"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="92856" e_stop="92557" e_length="300"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="92556" i_stop="91368" i_length="1189"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91367" e_stop="91051" e_length="317"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.980">
            <gDNA_intron_boundary i_start="91050" i_stop="90622" i_length="429"/>
          </intron>
          <exon e_serial="3" e_score="0.984">
            <gDNA_exon_boundary e_start="90621" e_stop="90309" e_length="313"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.466">
            <gDNA_intron_boundary i_start="90308" i_stop="89896" i_length="413"/>
          </intron>
          <exon e_serial="4" e_score="0.500">
            <gDNA_exon_boundary e_start="89895" e_stop="89886" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92856" stop="92557"/>
              <exon start="91367" stop="91051"/>
              <exon start="90621" stop="90441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92856" stop="92557"/>
              <exon start="91367" stop="91051"/>
              <exon start="90621" stop="90462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92855" stop="92557"/>
              <exon start="91367" stop="91104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92826" stop="92557"/>
              <exon start="91367" stop="91289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92616" stop="92557"/>
              <exon start="91367" stop="91051"/>
              <exon start="90621" stop="90309"/>
              <exon start="89895" stop="89886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548579" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAACACCAGAGAAGAAAAAGAACAAAAAAACAGAAATGGCGCTGAAGCCATTGTCTTCCATATTTCCAAATTCAACAAATCCATCATTAACATCTGCAAAACCCCATCATCAAAACATGGGGCTATCGAGAAGAGATTTCATCAATGTTGGTCTTTCTGTAATGCCACTGCTCGTATCTCCTCCTCCGCTTTCCATTGCTCGAGAAGTTGAAGTTGGTTCTTTCTTGCCTCCATCACCTACTGATCCTAATTTTGTTCTCTTTAAAGCAACTCCTAAAGACACTCCTGCTCTTCGTGCCG : GAAATGTGCAGCCTTACACATTTATTCTTCCTCCAACCTGGAAACAACTCCGTATAGCTAATATACTATCTGGAAACTATTGCCAACCCAAATGTGCAGAGCCGTGGGTGGAGGTGAAGTTTGAAAATGAAAAACAGGGTAAGGTTCAAGTGGTGGCTTCTCCTTTGATCCGTCTCACTAACAAACCTAATGCAACTATTGAAGACATTGGGACCCCTGAGAAAGTCATTGCTTCTCTTGGCCCTTTTGTCACAGGAAACACTCTCGATCCAGATGAACTCCTTGAGACTTCTATAGAGAAACGTGGTGATCTAACG : TATTACAAGTATGTTCTTGAAACTCCATACGCTCTTACTGGATCTCACAACCTAGCCAAGGCAACGGCCAAGGGAAATACAGTTGTCCTCTGTGTGGTCAGTGCCAATGACAAACAGTGGGCATCATCACAGAAAACTCTACAGGCTATTCTTGATTCTTTCGAAGTGTAGTTCCTTCCCCTCGTCTTCATTTTCTCTGTCTCTTCCCTTACATAGAGTGAGTGCCATGGGATAAGTGACTCAAAAATGATTTTTGTAATGCAATAAACAAGAATTGCTTCTGTCGAACCCAGATTATATTGTTGTTTTTACT : TCAACAATGA</gDNA_template>
            <first_frame> Q  H  Q  R  R  K  R  T  K  K  Q  K  W  R  *  S  H  C  L  P  Y  F  Q  I  Q  Q  I  H  H  *  H  L  Q  N  P  I  I  K  T  W  G  Y  R  E  E  I  S  S  M  L  V  F  L  *  C  H  C  S  Y  L  L  L  R  F  P  L  L  E  K  L  K  L  V  L  S  C  L  H  H  L  L  I  L  I  L  F  S  L  K  Q  L  L  K  T  L  L  L  F  V  P  :  E  M  C  S  L  T  H  L  F  F  L  Q  P  G  N  N  S  V  *  L  I  Y  Y  L  E  T  I  A  N  P  N  V  Q  S  R  G  W  R  *  S  L  K  M  K  N  R  V  R  F  K  W  W  L  L  L  *  S  V  S  L  T  N  L  M  Q  L  L  K  T  L  G  P  L  R  K  S  L  L  L  L  A  L  L  S  Q  E  T  L  S  I  Q  M  N  S  L  R  L  L  *  R  N  V  V  I  *  R :   I  T  S  M  F  L  K  L  H  T  L  L  L  D  L  T  T  *  P  R  Q  R  P  R  E  I  Q  L  S  S  V  W  S  V  P  M  T  N  S  G  H  H  H  R  K  L  Y  R  L  F  L  I  L  S  K  C  S  S  F  P  S  S  S  F  S  L  S  L  P  L  H  R  V  S  A  M  G  *  V  T  Q  K  *  F  L  *  C  N  K  Q  E  L  L  L  S  N  P  D  Y  I  V  V  F  T  :  S  T  M  </first_frame>
            <second_frame>  N  T  R  E  E  K  E  Q  K  N  R  N  G  A  E  A  I  V  F  H  I  S  K  F  N  K  S  I  I  N  I  C  K  T  P  S  S  K  H  G  A  I  E  K  R  F  H  Q  C  W  S  F  C  N  A  T  A  R  I  S  S  S  A  F  H  C  S  R  S  *  S  W  F  F  L  A  S  I  T  Y  *  S  *  F  C  S  L  *  S  N  S  *  R  H  S  C  S  S  C  R :   K  C  A  A  L  H  I  Y  S  S  S  N  L  E  T  T  P  Y  S  *  Y  T  I  W  K  L  L  P  T  Q  M  C  R  A  V  G  G  G  E  V  *  K  *  K  T  G  *  G  S  S  G  G  F  S  F  D  P  S  H  *  Q  T  *  C  N  Y  *  R  H  W  D  P  *  E  S  H  C  F  S  W  P  F  C  H  R  K  H  S  R  S  R  *  T  P  *  D  F  Y  R  E  T  W  *  S  N   : V  L  Q  V  C  S  *  N  S  I  R  S  Y  W  I  S  Q  P  S  Q  G  N  G  Q  G  K  Y  S  C  P  L  C  G  Q  C  Q  *  Q  T  V  G  I  I  T  E  N  S  T  G  Y  S  *  F  F  R  S  V  V  P  S  P  R  L  H  F  L  C  L  F  P  Y  I  E  *  V  P  W  D  K  *  L  K  N  D  F  C  N  A  I  N  K  N  C  F  C  R  T  Q  I  I  L  L  F  L  L :   Q  Q  * </second_frame>
            <third_frame>   T  P  E  K  K  K  N  K  K  T  E  M  A  L  K  P  L  S  S  I  F  P  N  S  T  N  P  S  L  T  S  A  K  P  H  H  Q  N  M  G  L  S  R  R  D  F  I  N  V  G  L  S  V  M  P  L  L  V  S  P  P  P  L  S  I  A  R  E  V  E  V  G  S  F  L  P  P  S  P  T  D  P  N  F  V  L  F  K  A  T  P  K  D  T  P  A  L  R  A   : G  N  V  Q  P  Y  T  F  I  L  P  P  T  W  K  Q  L  R  I  A  N  I  L  S  G  N  Y  C  Q  P  K  C  A  E  P  W  V  E  V  K  F  E  N  E  K  Q  G  K  V  Q  V  V  A  S  P  L  I  R  L  T  N  K  P  N  A  T  I  E  D  I  G  T  P  E  K  V  I  A  S  L  G  P  F  V  T  G  N  T  L  D  P  D  E  L  L  E  T  S  I  E  K  R  G  D  L  T  :  Y  Y  K  Y  V  L  E  T  P  Y  A  L  T  G  S  H  N  L  A  K  A  T  A  K  G  N  T  V  V  L  C  V  V  S  A  N  D  K  Q  W  A  S  S  Q  K  T  L  Q  A  I  L  D  S  F  E  V  *  F  L  P  L  V  F  I  F  S  V  S  S  L  T  *  S  E  C  H  G  I  S  D  S  K  M  I  F  V  M  Q  *  T  R  I  A  S  V  E  P  R  L  Y  C  C  F  Y   : F  N  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92854" stop="92557"/>
                    <exon start="91367" stop="91051"/>
                    <exon start="90621" stop="90451"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>783</number_coding_nucleotides>
                  <number_encoded_amino_acids>261</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPEKKKNKKTEMALKPLSSIFPNSTNPSLTSAKPHHQNMGLSRRDFINVGLSVMPLLVSPPPLSIAREVEVGSFLPPSPTDPNFVLFKATPKDTPALRAGNVQPYTFILPPTWKQLRIANILSGNYCQPKCAEPWVEVKFENEKQGKVQVVASPLIRLTNKPNATIEDIGTPEKVIASLGPFVTGNTLDPDELLETSIEKRGDLTYYKYVLETPYALTGSHNLAKATAKGNTVVLCVVSANDKQWASSQKTLQAILDSFEV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="92856" e_stop="92557"/>
            <exon e_start="91367" e_stop="91051"/>
            <exon e_start="90621" e_stop="90205"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="92856" e_stop="92557" e_length="300"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="92556" i_stop="91368" i_length="1189"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91367" e_stop="91051" e_length="317"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.980">
            <gDNA_intron_boundary i_start="91050" i_stop="90622" i_length="429"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="90621" e_stop="90205" e_length="417"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92856" stop="92557"/>
              <exon start="91367" stop="91051"/>
              <exon start="90621" stop="90441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92856" stop="92557"/>
              <exon start="91367" stop="91051"/>
              <exon start="90621" stop="90462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92855" stop="92557"/>
              <exon start="91367" stop="91104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92826" stop="92557"/>
              <exon start="91367" stop="91289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92607" stop="92557"/>
              <exon start="91367" stop="91051"/>
              <exon start="90621" stop="90205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733913" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAACACCAGAGAAGAAAAAGAACAAAAAAACAGAAATGGCGCTGAAGCCATTGTCTTCCATATTTCCAAATTCAACAAATCCATCATTAACATCTGCAAAACCCCATCATCAAAACATGGGGCTATCGAGAAGAGATTTCATCAATGTTGGTCTTTCTGTAATGCCACTGCTCGTATCTCCTCCTCCGCTTTCCATTGCTCGAGAAGTTGAAGTTGGTTCTTTCTTGCCTCCATCACCTACTGATCCTAATTTTGTTCTCTTTAAAGCAACTCCTAAAGACACTCCTGCTCTTCGTGCCG : GAAATGTGCAGCCTTACACATTTATTCTTCCTCCAACCTGGAAACAACTCCGTATAGCTAATATACTATCTGGAAACTATTGCCAACCCAAATGTGCAGAGCCGTGGGTGGAGGTGAAGTTTGAAAATGAAAAACAGGGTAAGGTTCAAGTGGTGGCTTCTCCTTTGATCCGTCTCACTAACAAACCTAATGCAACTATTGAAGACATTGGGACCCCTGAGAAAGTCATTGCTTCTCTTGGCCCTTTTGTCACAGGAAACACTCTCGATCCAGATGAACTCCTTGAGACTTCTATAGAGAAACGTGGTGATCTAACG : TATTACAAGTATGTTCTTGAAACTCCATACGCTCTTACTGGATCTCACAACCTAGCCAAGGCAACGGCCAAGGGAAATACAGTTGTCCTCTGTGTGGTCAGTGCCAATGACAAACAGTGGGCATCATCACAGAAAACTCTACAGGCTATTCTTGATTCTTTCGAAGTGTAGTTCCTTCCCCTCGTCTTCATTTTCTCTGTCTCTTCCCTTACATAGAGTGAGTGCCATGGGATAAGTGACTCAAAAATGATTTTTGTAATGCAATAAACAAGAATTGCTTCTGTCGAACCCAGATTATATTGTTGTTTTTACTGTATCCCCCTTTCAATTGTATCATATCAATACAAAAAATGCACGAATGAGTAGCAGTAGCTCTACTGTAAACTACTTGTGTCTTGTTCTCATGAATTTAGAAAA</gDNA_template>
            <first_frame> Q  H  Q  R  R  K  R  T  K  K  Q  K  W  R  *  S  H  C  L  P  Y  F  Q  I  Q  Q  I  H  H  *  H  L  Q  N  P  I  I  K  T  W  G  Y  R  E  E  I  S  S  M  L  V  F  L  *  C  H  C  S  Y  L  L  L  R  F  P  L  L  E  K  L  K  L  V  L  S  C  L  H  H  L  L  I  L  I  L  F  S  L  K  Q  L  L  K  T  L  L  L  F  V  P  :  E  M  C  S  L  T  H  L  F  F  L  Q  P  G  N  N  S  V  *  L  I  Y  Y  L  E  T  I  A  N  P  N  V  Q  S  R  G  W  R  *  S  L  K  M  K  N  R  V  R  F  K  W  W  L  L  L  *  S  V  S  L  T  N  L  M  Q  L  L  K  T  L  G  P  L  R  K  S  L  L  L  L  A  L  L  S  Q  E  T  L  S  I  Q  M  N  S  L  R  L  L  *  R  N  V  V  I  *  R :   I  T  S  M  F  L  K  L  H  T  L  L  L  D  L  T  T  *  P  R  Q  R  P  R  E  I  Q  L  S  S  V  W  S  V  P  M  T  N  S  G  H  H  H  R  K  L  Y  R  L  F  L  I  L  S  K  C  S  S  F  P  S  S  S  F  S  L  S  L  P  L  H  R  V  S  A  M  G  *  V  T  Q  K  *  F  L  *  C  N  K  Q  E  L  L  L  S  N  P  D  Y  I  V  V  F  T  V  S  P  F  Q  L  Y  H  I  N  T  K  N  A  R  M  S  S  S  S  S  T  V  N  Y  L  C  L  V  L  M  N  L  E   </first_frame>
            <second_frame>  N  T  R  E  E  K  E  Q  K  N  R  N  G  A  E  A  I  V  F  H  I  S  K  F  N  K  S  I  I  N  I  C  K  T  P  S  S  K  H  G  A  I  E  K  R  F  H  Q  C  W  S  F  C  N  A  T  A  R  I  S  S  S  A  F  H  C  S  R  S  *  S  W  F  F  L  A  S  I  T  Y  *  S  *  F  C  S  L  *  S  N  S  *  R  H  S  C  S  S  C  R :   K  C  A  A  L  H  I  Y  S  S  S  N  L  E  T  T  P  Y  S  *  Y  T  I  W  K  L  L  P  T  Q  M  C  R  A  V  G  G  G  E  V  *  K  *  K  T  G  *  G  S  S  G  G  F  S  F  D  P  S  H  *  Q  T  *  C  N  Y  *  R  H  W  D  P  *  E  S  H  C  F  S  W  P  F  C  H  R  K  H  S  R  S  R  *  T  P  *  D  F  Y  R  E  T  W  *  S  N   : V  L  Q  V  C  S  *  N  S  I  R  S  Y  W  I  S  Q  P  S  Q  G  N  G  Q  G  K  Y  S  C  P  L  C  G  Q  C  Q  *  Q  T  V  G  I  I  T  E  N  S  T  G  Y  S  *  F  F  R  S  V  V  P  S  P  R  L  H  F  L  C  L  F  P  Y  I  E  *  V  P  W  D  K  *  L  K  N  D  F  C  N  A  I  N  K  N  C  F  C  R  T  Q  I  I  L  L  F  L  L  Y  P  P  F  N  C  I  I  S  I  Q  K  M  H  E  *  V  A  V  A  L  L  *  T  T  C  V  L  F  S  *  I  *  K  </second_frame>
            <third_frame>   T  P  E  K  K  K  N  K  K  T  E  M  A  L  K  P  L  S  S  I  F  P  N  S  T  N  P  S  L  T  S  A  K  P  H  H  Q  N  M  G  L  S  R  R  D  F  I  N  V  G  L  S  V  M  P  L  L  V  S  P  P  P  L  S  I  A  R  E  V  E  V  G  S  F  L  P  P  S  P  T  D  P  N  F  V  L  F  K  A  T  P  K  D  T  P  A  L  R  A   : G  N  V  Q  P  Y  T  F  I  L  P  P  T  W  K  Q  L  R  I  A  N  I  L  S  G  N  Y  C  Q  P  K  C  A  E  P  W  V  E  V  K  F  E  N  E  K  Q  G  K  V  Q  V  V  A  S  P  L  I  R  L  T  N  K  P  N  A  T  I  E  D  I  G  T  P  E  K  V  I  A  S  L  G  P  F  V  T  G  N  T  L  D  P  D  E  L  L  E  T  S  I  E  K  R  G  D  L  T  :  Y  Y  K  Y  V  L  E  T  P  Y  A  L  T  G  S  H  N  L  A  K  A  T  A  K  G  N  T  V  V  L  C  V  V  S  A  N  D  K  Q  W  A  S  S  Q  K  T  L  Q  A  I  L  D  S  F  E  V  *  F  L  P  L  V  F  I  F  S  V  S  S  L  T  *  S  E  C  H  G  I  S  D  S  K  M  I  F  V  M  Q  *  T  R  I  A  S  V  E  P  R  L  Y  C  C  F  Y  C  I  P  L  S  I  V  S  Y  Q  Y  K  K  C  T  N  E  *  Q  *  L  Y  C  K  L  L  V  S  C  S  H  E  F  R  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92854" stop="92557"/>
                    <exon start="91367" stop="91051"/>
                    <exon start="90621" stop="90451"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>783</number_coding_nucleotides>
                  <number_encoded_amino_acids>261</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPEKKKNKKTEMALKPLSSIFPNSTNPSLTSAKPHHQNMGLSRRDFINVGLSVMPLLVSPPPLSIAREVEVGSFLPPSPTDPNFVLFKATPKDTPALRAGNVQPYTFILPPTWKQLRIANILSGNYCQPKCAEPWVEVKFENEKQGKVQVVASPLIRLTNKPNATIEDIGTPEKVIASLGPFVTGNTLDPDELLETSIEKRGDLTYYKYVLETPYALTGSHNLAKATAKGNTVVLCVVSANDKQWASSQKTLQAILDSFEV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="92606" e_stop="92557"/>
            <exon e_start="91377" e_stop="91051"/>
            <exon e_start="90621" e_stop="90464"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.379" e_score="0.980"/>
          <exon-intron don_prob="0.999" acc_prob="0.980" e_score="0.985"/>
          <exon-only e_score="0.892"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="92606" e_stop="92557" e_length="50"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.379">
            <gDNA_intron_boundary i_start="92556" i_stop="91378" i_length="1179"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="91377" e_stop="91051" e_length="327"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.980">
            <gDNA_intron_boundary i_start="91050" i_stop="90622" i_length="429"/>
          </intron>
          <exon e_serial="3" e_score="0.892">
            <gDNA_exon_boundary e_start="90621" e_stop="90464" e_length="158"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92606" stop="92557"/>
              <exon start="91377" stop="91051"/>
              <exon start="90621" stop="90464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92606" stop="92557"/>
              <exon start="91377" stop="91103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464124" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTGTTCTCTTTAAAGCAACTCCTAAAGACACTCCTGCTCTTCGTGCCG : TTTCTTGCAGGAAATGTGCAGCCTTACACATTTATTCTTCCTCCAACCTGGAAACAACTCCGTATAGCTAATATACTATCTGGAAACTATTGCCAACCCAAATGTGCAGAGCCGTGGGTGGAGGTGAAGTTTGAAAATGAAAAACAGGGTAAGGTTCAAGTGGTGGCTTCTCCTTTGATCCGTCTCACTAACAAACCTAATGCAACTATTGAAGACATTGGGACCCCTGAGAAAGTCATTGCTTCTCTTGGCCCTTTTGTCACAGGAAACACTCTCGATCCAGATGAACTCCTTGAGACTTCTATAGAGAAACGTGGTGATCTAACG : TATTACAAGTATGTTCTTGAAACTCCATACGCTCTTACTGGATCTCACAACCTAGCCAAGGCAACGGCCAAGGGAAATACAGTTGTCCTCTGTGTGGTCAGTGCCAATGACAAACAGTGGGCATCATCACAGAAAACTCTACAGGCTATTCTTGATTC</gDNA_template>
            <first_frame> F  C  S  L  *  S  N  S  *  R  H  S  C  S  S  C  R :   F  L  Q  E  M  C  S  L  T  H  L  F  F  L  Q  P  G  N  N  S  V  *  L  I  Y  Y  L  E  T  I  A  N  P  N  V  Q  S  R  G  W  R  *  S  L  K  M  K  N  R  V  R  F  K  W  W  L  L  L  *  S  V  S  L  T  N  L  M  Q  L  L  K  T  L  G  P  L  R  K  S  L  L  L  L  A  L  L  S  Q  E  T  L  S  I  Q  M  N  S  L  R  L  L  *  R  N  V  V  I  *  R :   I  T  S  M  F  L  K  L  H  T  L  L  L  D  L  T  T  *  P  R  Q  R  P  R  E  I  Q  L  S  S  V  W  S  V  P  M  T  N  S  G  H  H  H  R  K  L  Y  R  L  F  L  I  </first_frame>
            <second_frame>  F  V  L  F  K  A  T  P  K  D  T  P  A  L  R  A   : V  S  C  R  K  C  A  A  L  H  I  Y  S  S  S  N  L  E  T  T  P  Y  S  *  Y  T  I  W  K  L  L  P  T  Q  M  C  R  A  V  G  G  G  E  V  *  K  *  K  T  G  *  G  S  S  G  G  F  S  F  D  P  S  H  *  Q  T  *  C  N  Y  *  R  H  W  D  P  *  E  S  H  C  F  S  W  P  F  C  H  R  K  H  S  R  S  R  *  T  P  *  D  F  Y  R  E  T  W  *  S  N   : V  L  Q  V  C  S  *  N  S  I  R  S  Y  W  I  S  Q  P  S  Q  G  N  G  Q  G  K  Y  S  C  P  L  C  G  Q  C  Q  *  Q  T  V  G  I  I  T  E  N  S  T  G  Y  S  *  F </second_frame>
            <third_frame>   L  F  S  L  K  Q  L  L  K  T  L  L  L  F  V  P  :  F  L  A  G  N  V  Q  P  Y  T  F  I  L  P  P  T  W  K  Q  L  R  I  A  N  I  L  S  G  N  Y  C  Q  P  K  C  A  E  P  W  V  E  V  K  F  E  N  E  K  Q  G  K  V  Q  V  V  A  S  P  L  I  R  L  T  N  K  P  N  A  T  I  E  D  I  G  T  P  E  K  V  I  A  S  L  G  P  F  V  T  G  N  T  L  D  P  D  E  L  L  E  T  S  I  E  K  R  G  D  L  T  :  Y  Y  K  Y  V  L  E  T  P  Y  A  L  T  G  S  H  N  L  A  K  A  T  A  K  G  N  T  V  V  L  C  V  V  S  A  N  D  K  Q  W  A  S  S  Q  K  T  L  Q  A  I  L  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92604" stop="92557"/>
                    <exon start="91377" stop="91051"/>
                    <exon start="90621" stop="90466"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFSLKQLLKTLLLFVPFLAGNVQPYTFILPPTWKQLRIANILSGNYCQPKCAEPWVEVKFENEKQGKVQVVASPLIRLTNKPNATIEDIGTPEKVIASLGPFVTGNTLDPDELLETSIEKRGDLTYYKYVLETPYALTGSHNLAKATAKGNTVVLCVVSANDKQWASSQKTLQAILD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="96270" PGL_stop="93120"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96270" e_stop="96071"/>
            <exon e_start="93875" e_stop="93532"/>
            <exon e_start="93151" e_stop="93120"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.940" e_score="0.995"/>
          <exon-intron don_prob="0.000" acc_prob="0.857" e_score="0.997"/>
          <exon-only e_score="0.516"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="96270" e_stop="96071" e_length="200"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.940">
            <gDNA_intron_boundary i_start="96070" i_stop="93876" i_length="2195"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="93875" e_stop="93532" e_length="344"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.857">
            <gDNA_intron_boundary i_start="93531" i_stop="93152" i_length="380"/>
          </intron>
          <exon e_serial="3" e_score="0.516">
            <gDNA_exon_boundary e_start="93151" e_stop="93120" e_length="32"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96270" stop="96071"/>
              <exon start="93875" stop="93532"/>
              <exon start="93151" stop="93120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395047" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96241" stop="96071"/>
              <exon start="93875" stop="93532"/>
              <exon start="93151" stop="93120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392595" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96239" stop="96071"/>
              <exon start="93875" stop="93532"/>
              <exon start="93151" stop="93121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275316" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96151" stop="96071"/>
              <exon start="93875" stop="93532"/>
              <exon start="93151" stop="93120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392362" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96146" stop="96071"/>
              <exon start="93875" stop="93532"/>
              <exon start="93151" stop="93121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275269" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTGCTCCTAGTTTTAGTATCTTAATAGTCAGATAAACTCATCTAATTTTGCGAATAGTCAATTTTCTTATTAGACTTTGTATTACTTTAGTTTGGTGGTTTCCTGCCAAAAGCACAATCTGGAGATTGATAGGCAGAGGCAGATCAGATGTGGAGGTCGAAAGGAGCAAATGCCAACTGCACCCCACTCTCTTGAAGAA : GAGAAGCTGTATCCATAGAAGAGTGTTGATTGCCTAATGCGAGAAGAGATCTCAACAACATAATGGAACAGCATCATCATTAGTGAAATACTTGCGAGAGCAGCTTACTTGCAGTTGTGGAGAACAAGAAATATGCCCCAGTGATGAGAATCCACCAAAAAATCTAACTTGCTTATTACCCACCAGTGAAATTTGGCAAGCAAGAGTAACTCATAAAAATGAATCATCCTAGATTTACTTCACAGATCATACAGCTCTGAAAAAGTAGCTAACTGTAACTTATTTGAACACACGACAACAAAAGTTTAGTTCATATCTTAAATCATGAGAAACTTTCTATAACA : CACAAAAGGAAGGGTGGGCAATAGGTATCACG</gDNA_template>
            <first_frame> G  A  P  S  F  S  I  L  I  V  R  *  T  H  L  I  L  R  I  V  N  F  L  I  R  L  C  I  T  L  V  W  W  F  P  A  K  S  T  I  W  R  L  I  G  R  G  R  S  D  V  E  V  E  R  S  K  C  Q  L  H  P  T  L  L  K  K :   R  S  C  I  H  R  R  V  L  I  A  *  C  E  K  R  S  Q  Q  H  N  G  T  A  S  S  L  V  K  Y  L  R  E  Q  L  T  C  S  C  G  E  Q  E  I  C  P  S  D  E  N  P  P  K  N  L  T  C  L  L  P  T  S  E  I  W  Q  A  R  V  T  H  K  N  E  S  S  *  I  Y  F  T  D  H  T  A  L  K  K  *  L  T  V  T  Y  L  N  T  R  Q  Q  K  F  S  S  Y  L  K  S  *  E  T  F  Y  N   : T  Q  K  E  G  W  A  I  G  I  T </first_frame>
            <second_frame>  V  L  L  V  L  V  S  *  *  S  D  K  L  I  *  F  C  E  *  S  I  F  L  L  D  F  V  L  L  *  F  G  G  F  L  P  K  A  Q  S  G  D  *  *  A  E  A  D  Q  M  W  R  S  K  G  A  N  A  N  C  T  P  L  S  *  R   : R  E  A  V  S  I  E  E  C  *  L  P  N  A  R  R  D  L  N  N  I  M  E  Q  H  H  H  *  *  N  T  C  E  S  S  L  L  A  V  V  E  N  K  K  Y  A  P  V  M  R  I  H  Q  K  I  *  L  A  Y  Y  P  P  V  K  F  G  K  Q  E  *  L  I  K  M  N  H  P  R  F  T  S  Q  I  I  Q  L  *  K  S  S  *  L  *  L  I  *  T  H  D  N  K  S  L  V  H  I  L  N  H  E  K  L  S  I  T  :  H  K  R  K  G  G  Q  *  V  S   </second_frame>
            <third_frame>   C  S  *  F  *  Y  L  N  S  Q  I  N  S  S  N  F  A  N  S  Q  F  S  Y  *  T  L  Y  Y  F  S  L  V  V  S  C  Q  K  H  N  L  E  I  D  R  Q  R  Q  I  R  C  G  G  R  K  E  Q  M  P  T  A  P  H  S  L  E  E  :  E  K  L  Y  P  *  K  S  V  D  C  L  M  R  E  E  I  S  T  T  *  W  N  S  I  I  I  S  E  I  L  A  R  A  A  Y  L  Q  L  W  R  T  R  N  M  P  Q  *  *  E  S  T  K  K  S  N  L  L  I  T  H  Q  *  N  L  A  S  K  S  N  S  *  K  *  I  I  L  D  L  L  H  R  S  Y  S  S  E  K  V  A  N  C  N  L  F  E  H  T  T  T  K  V  *  F  I  S  *  I  M  R  N  F  L  *  H :   T  K  G  R  V  G  N  R  Y  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96234" stop="96071"/>
                    <exon start="93875" stop="93839"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THLILRIVNFLIRLCITLVWWFPAKSTIWRLIGRGRSDVEVERSKCQLHPTLLKKRSCIHRRVLIA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93838" stop="93644"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CEKRSQQHNGTASSLVKYLREQLTCSCGEQEICPSDENPPKNLTCLLPTSEIWQARVTHKNESS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="101900" PGL_stop="96585"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101900" e_stop="100725"/>
            <exon e_start="99363" e_stop="99274"/>
            <exon e_start="98766" e_stop="98585"/>
            <exon e_start="97851" e_stop="97731"/>
            <exon e_start="97294" e_stop="97223"/>
            <exon e_start="97126" e_stop="96585"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.349" e_score="0.998"/>
          <exon-intron don_prob="0.999" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.025" e_score="1.000"/>
          <exon-intron don_prob="0.894" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="101900" e_stop="100725" e_length="1176"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.349">
            <gDNA_intron_boundary i_start="100724" i_stop="99364" i_length="1361"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="99363" e_stop="99274" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.944">
            <gDNA_intron_boundary i_start="99273" i_stop="98767" i_length="507"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="98766" e_stop="98585" e_length="182"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.025">
            <gDNA_intron_boundary i_start="98584" i_stop="97852" i_length="733"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="97851" e_stop="97731" e_length="121"/>
          </exon>
          <intron i_serial="4" don_prob="0.894" acc_prob="0.960">
            <gDNA_intron_boundary i_start="97730" i_stop="97295" i_length="436"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="97294" e_stop="97223" e_length="72"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="97222" i_stop="97127" i_length="96"/>
          </intron>
          <exon e_serial="6" e_score="0.984">
            <gDNA_exon_boundary e_start="97126" e_stop="96585" e_length="542"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101900" stop="101355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101900" stop="101394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101895" stop="101100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101887" stop="100725"/>
              <exon start="99363" stop="99274"/>
              <exon start="98766" stop="98585"/>
              <exon start="97851" stop="97731"/>
              <exon start="97294" stop="97223"/>
              <exon start="97126" stop="96614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101881" stop="101185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101830" stop="101273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101534" stop="100977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101325" stop="100810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100875" stop="100725"/>
              <exon start="99363" stop="99274"/>
              <exon start="98766" stop="98585"/>
              <exon start="97851" stop="97731"/>
              <exon start="97294" stop="97223"/>
              <exon start="97126" stop="96906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100873" stop="100725"/>
              <exon start="99363" stop="99274"/>
              <exon start="98766" stop="98585"/>
              <exon start="97851" stop="97753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E608986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97839" stop="97731"/>
              <exon start="97294" stop="97223"/>
              <exon start="97126" stop="96585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423591" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97274" stop="97223"/>
              <exon start="97126" stop="96891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392361" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAGCTTCCATACCACCGAGGTAAAAGGCCAATCCCCATTAAAGCAGAGTCATGCTCGTTCGTCGTATGGGTTATATCTCACCTTCTCTTTCTATAAAAACCTCACCTTTCTTCTCTATTCTCACAAAAAACCCTTTTCCATTTCATCATCTTCATCCTATCCAATTCTTCAAACCAATTCACACCAAATCCCCACAAACCCATCTCTTTTCCATGAACCAAAAACCCCATTTCACCACTTCCGCTGCTTTTCTCCAAGAACCCACAAACACAAAAACATTGTCTAACAGGTCGGCCAAGAAAGCTCGCCGTGACGCCCCTGAGAGTGTGCTGCGTCATCAGTTAGACCAGTGTTCTAAACGGGGTGATTTACAGGAAGCAATTCGACTTTATGAAGAAGCTAAGTTAAACAATATTACCCTTAATGTTCATCATTATAATGTGTTGCTTTATCTTTGTTCTTCTGGTTCGGGTACTGAGGGATGTGGGATTGAGAAAGGATTTCTGATTTTTAAACAGATGGGGGTTAATGGTGTTGCTCCGAATGAGGCGACGTTTACTAGTGCTGCTAGATTGGCAGTTGCTAAGCAAGACCCAGAAATGGCTTTTGATTTAGTGAAGAAAATGAAGAGTTTTGGTGTTCCTCCTAAGTTAAGATCATATGGCCCAGCGTTGTTTGGGTTTTGTGAAAAGGGAATGGCTGATAAGGCTTATGAGGTTGATGTACATATGGGGGAATCAGGGGTTGTGGCTGAGGAAGCAGAGCTTTCTGCTCTGTTGAAAGTTAGTTCTTTTTCTAAAAAGGCTGATAAAGTATATGAAATGATGCATAGATTAAGGGCAAGTGTAAGGCAGGTGTGTGAAGAGACTGTTGGTGTAGTAGAGGATTGGTTTAATTCTGAATATGCTGCTGAGGTTGGGCTGCAGGATTGGGATGCTCGGAAAGTGAAGGAAGGTGTTGTGAAAGGAGGAGGTGGTTGGCATGGACAAGGGTGGTTGGGAAAGGGGAATTGGACTGTAGTGAGGGCGGAGATGGATAGTTCCGGAGTTTGCCGTTCATGTGGGGAAAAGCTTGTGTGCATTGACATTGATCCTAAGGAGACAGAGAACTTTGCTAATTCCTTGGCTGAATTGGCTTCTGAAAGAGAAGTCAAGGCTAATTTTGTGCAATTTCAG : GACTGGCTTCAGAAGCATGGTCCATTCGATGCCGTGGTGGATGGTGCAAATGTCGGCCTTATCACTCAACGAAATTTTAATTTCTCCCAG : CTTAGGTCTGTTGTCAATAAATTAAGGCAGATGAGTGAATCGAAGAAACTTCCATTGGTTATTTTGCACAAAAGCCGTACAACTGGTGGTCCTGCTCAACATCCTAATAACAAGAAGCTGTTAGAAAGCTGGAAGAAAGCAGGTGCACTTTATGCCACTCCACATGGTTCAAATGATGATTG : GTACTGGTTATATGCTGCTGTCAGTTCCAAAGGCTTGCTTTTGACAAATGATGAGATGAGAGACCATTTGTTCCAACTATTAGGCACTAGCTTTTTTCCCAGATGGAAGGAAAAACATCAG : ATCCGGATGACAGCTTCAAGAGATGACGGACTTAAGCTCCATATGCCACCACCCTATTCAATTGTTATTCAG : GAGTCAGAGCAGGGTTGTTGGCATATACCAACTCTTACTGGAGATGACCTTGAGATACCAAGACAGTGGGTATGTGCTACCAGGAAAAAAGCACTGCACTCTGTCTTTCGATGAACTGGGAATCAAATCATTAACATATAAATGTGATTTCTGGGACAGCATCAGTGAAGCAACCATGCATGAGTGCTTTTTTTCTTTGAAGAAGCTTATAATTTGAACTTCTCATAGGTTGTTGTAGATGGAGATCAGGAAGATCGCTAAATGCAAAAGTTTCTGGATACAGTCAACGTCTCTATAACAGTCTAGTTTTATTATCTTGTATACTAGTTTTTGCTTGTGTGTTCTGGAGTATTTTGTCAATTTTTTTGTAACAATTTTGCCAGTTACAAGTGTTAGAAGGAAAAAGTTCTGCCACAATAGAAGAATCGTGCTTTTGAAACTCAAAGAGGATATTGCTGCATTTTAATATTTAATTTGCTGGTCCCTGAGTACAAGAAGAAAAACAGCTTATGAAGTTCAAATTATTTATCTTTGAATAGAAA</gDNA_template>
            <first_frame> S  A  S  I  P  P  R  *  K  A  N  P  H  *  S  R  V  M  L  V  R  R  M  G  Y  I  S  P  S  L  S  I  K  T  S  P  F  F  S  I  L  T  K  N  P  F  P  F  H  H  L  H  P  I  Q  F  F  K  P  I  H  T  K  S  P  Q  T  H  L  F  S  M  N  Q  K  P  H  F  T  T  S  A  A  F  L  Q  E  P  T  N  T  K  T  L  S  N  R  S  A  K  K  A  R  R  D  A  P  E  S  V  L  R  H  Q  L  D  Q  C  S  K  R  G  D  L  Q  E  A  I  R  L  Y  E  E  A  K  L  N  N  I  T  L  N  V  H  H  Y  N  V  L  L  Y  L  C  S  S  G  S  G  T  E  G  C  G  I  E  K  G  F  L  I  F  K  Q  M  G  V  N  G  V  A  P  N  E  A  T  F  T  S  A  A  R  L  A  V  A  K  Q  D  P  E  M  A  F  D  L  V  K  K  M  K  S  F  G  V  P  P  K  L  R  S  Y  G  P  A  L  F  G  F  C  E  K  G  M  A  D  K  A  Y  E  V  D  V  H  M  G  E  S  G  V  V  A  E  E  A  E  L  S  A  L  L  K  V  S  S  F  S  K  K  A  D  K  V  Y  E  M  M  H  R  L  R  A  S  V  R  Q  V  C  E  E  T  V  G  V  V  E  D  W  F  N  S  E  Y  A  A  E  V  G  L  Q  D  W  D  A  R  K  V  K  E  G  V  V  K  G  G  G  G  W  H  G  Q  G  W  L  G  K  G  N  W  T  V  V  R  A  E  M  D  S  S  G  V  C  R  S  C  G  E  K  L  V  C  I  D  I  D  P  K  E  T  E  N  F  A  N  S  L  A  E  L  A  S  E  R  E  V  K  A  N  F  V  Q  F  Q  :  D  W  L  Q  K  H  G  P  F  D  A  V  V  D  G  A  N  V  G  L  I  T  Q  R  N  F  N  F  S  Q  :  L  R  S  V  V  N  K  L  R  Q  M  S  E  S  K  K  L  P  L  V  I  L  H  K  S  R  T  T  G  G  P  A  Q  H  P  N  N  K  K  L  L  E  S  W  K  K  A  G  A  L  Y  A  T  P  H  G  S  N  D  D  W :   Y  W  L  Y  A  A  V  S  S  K  G  L  L  L  T  N  D  E  M  R  D  H  L  F  Q  L  L  G  T  S  F  F  P  R  W  K  E  K  H  Q  :  I  R  M  T  A  S  R  D  D  G  L  K  L  H  M  P  P  P  Y  S  I  V  I  Q  :  E  S  E  Q  G  C  W  H  I  P  T  L  T  G  D  D  L  E  I  P  R  Q  W  V  C  A  T  R  K  K  A  L  H  S  V  F  R  *  T  G  N  Q  I  I  N  I  *  M  *  F  L  G  Q  H  Q  *  S  N  H  A  *  V  L  F  F  F  E  E  A  Y  N  L  N  F  S  *  V  V  V  D  G  D  Q  E  D  R  *  M  Q  K  F  L  D  T  V  N  V  S  I  T  V  *  F  Y  Y  L  V  Y  *  F  L  L  V  C  S  G  V  F  C  Q  F  F  C  N  N  F  A  S  Y  K  C  *  K  E  K  V  L  P  Q  *  K  N  R  A  F  E  T  Q  R  G  Y  C  C  I  L  I  F  N  L  L  V  P  E  Y  K  K  K  N  S  L  *  S  S  N  Y  L  S  L  N  R   </first_frame>
            <second_frame>  Q  L  P  Y  H  R  G  K  R  P  I  P  I  K  A  E  S  C  S  F  V  V  W  V  I  S  H  L  L  F  L  *  K  P  H  L  S  S  L  F  S  Q  K  T  L  F  H  F  I  I  F  I  L  S  N  S  S  N  Q  F  T  P  N  P  H  K  P  I  S  F  P  *  T  K  N  P  I  S  P  L  P  L  L  F  S  K  N  P  Q  T  Q  K  H  C  L  T  G  R  P  R  K  L  A  V  T  P  L  R  V  C  C  V  I  S  *  T  S  V  L  N  G  V  I  Y  R  K  Q  F  D  F  M  K  K  L  S  *  T  I  L  P  L  M  F  I  I  I  M  C  C  F  I  F  V  L  L  V  R  V  L  R  D  V  G  L  R  K  D  F  *  F  L  N  R  W  G  L  M  V  L  L  R  M  R  R  R  L  L  V  L  L  D  W  Q  L  L  S  K  T  Q  K  W  L  L  I  *  *  R  K  *  R  V  L  V  F  L  L  S  *  D  H  M  A  Q  R  C  L  G  F  V  K  R  E  W  L  I  R  L  M  R  L  M  Y  I  W  G  N  Q  G  L  W  L  R  K  Q  S  F  L  L  C  *  K  L  V  L  F  L  K  R  L  I  K  Y  M  K  *  C  I  D  *  G  Q  V  *  G  R  C  V  K  R  L  L  V  *  *  R  I  G  L  I  L  N  M  L  L  R  L  G  C  R  I  G  M  L  G  K  *  R  K  V  L  *  K  E  E  V  V  G  M  D  K  G  G  W  E  R  G  I  G  L  *  *  G  R  R  W  I  V  P  E  F  A  V  H  V  G  K  S  L  C  A  L  T  L  I  L  R  R  Q  R  T  L  L  I  P  W  L  N  W  L  L  K  E  K  S  R  L  I  L  C  N  F  R :   T  G  F  R  S  M  V  H  S  M  P  W  W  M  V  Q  M  S  A  L  S  L  N  E  I  L  I  S  P  S :   L  G  L  L  S  I  N  *  G  R  *  V  N  R  R  N  F  H  W  L  F  C  T  K  A  V  Q  L  V  V  L  L  N  I  L  I  T  R  S  C  *  K  A  G  R  K  Q  V  H  F  M  P  L  H  M  V  Q  M  M  I   : G  T  G  Y  M  L  L  S  V  P  K  A  C  F  *  Q  M  M  R  *  E  T  I  C  S  N  Y  *  A  L  A  F  F  P  D  G  R  K  N  I  R :   S  G  *  Q  L  Q  E  M  T  D  L  S  S  I  C  H  H  P  I  Q  L  L  F  R :   S  Q  S  R  V  V  G  I  Y  Q  L  L  L  E  M  T  L  R  Y  Q  D  S  G  Y  V  L  P  G  K  K  H  C  T  L  S  F  D  E  L  G  I  K  S  L  T  Y  K  C  D  F  W  D  S  I  S  E  A  T  M  H  E  C  F  F  S  L  K  K  L  I  I  *  T  S  H  R  L  L  *  M  E  I  R  K  I  A  K  C  K  S  F  W  I  Q  S  T  S  L  *  Q  S  S  F  I  I  L  Y  T  S  F  C  L  C  V  L  E  Y  F  V  N  F  F  V  T  I  L  P  V  T  S  V  R  R  K  K  F  C  H  N  R  R  I  V  L  L  K  L  K  E  D  I  A  A  F  *  Y  L  I  C  W  S  L  S  T  R  R  K  T  A  Y  E  V  Q  I  I  Y  L  *  I  E  </second_frame>
            <third_frame>   S  F  H  T  T  E  V  K  G  Q  S  P  L  K  Q  S  H  A  R  S  S  Y  G  L  Y  L  T  F  S  F  Y  K  N  L  T  F  L  L  Y  S  H  K  K  P  F  S  I  S  S  S  S  S  Y  P  I  L  Q  T  N  S  H  Q  I  P  T  N  P  S  L  F  H  E  P  K  T  P  F  H  H  F  R  C  F  S  P  R  T  H  K  H  K  N  I  V  *  Q  V  G  Q  E  S  S  P  *  R  P  *  E  C  A  A  S  S  V  R  P  V  F  *  T  G  *  F  T  G  S  N  S  T  L  *  R  S  *  V  K  Q  Y  Y  P  *  C  S  S  L  *  C  V  A  L  S  L  F  F  W  F  G  Y  *  G  M  W  D  *  E  R  I  S  D  F  *  T  D  G  G  *  W  C  C  S  E  *  G  D  V  Y  *  C  C  *  I  G  S  C  *  A  R  P  R  N  G  F  *  F  S  E  E  N  E  E  F  W  C  S  S  *  V  K  I  I  W  P  S  V  V  W  V  L  *  K  G  N  G  *  *  G  L  *  G  *  C  T  Y  G  G  I  R  G  C  G  *  G  S  R  A  F  C  S  V  E  S  *  F  F  F  *  K  G  *  *  S  I  *  N  D  A  *  I  K  G  K  C  K  A  G  V  *  R  D  C  W  C  S  R  G  L  V  *  F  *  I  C  C  *  G  W  A  A  G  L  G  C  S  E  S  E  G  R  C  C  E  R  R  R  W  L  A  W  T  R  V  V  G  K  G  E  L  D  C  S  E  G  G  D  G  *  F  R  S  L  P  F  M  W  G  K  A  C  V  H  *  H  *  S  *  G  D  R  E  L  C  *  F  L  G  *  I  G  F  *  K  R  S  Q  G  *  F  C  A  I  S   : G  L  A  S  E  A  W  S  I  R  C  R  G  G  W  C  K  C  R  P  Y  H  S  T  K  F  *  F  L  P   : A  *  V  C  C  Q  *  I  K  A  D  E  *  I  E  E  T  S  I  G  Y  F  A  Q  K  P  Y  N  W  W  S  C  S  T  S  *  *  Q  E  A  V  R  K  L  E  E  S  R  C  T  L  C  H  S  T  W  F  K  *  *  L  :  V  L  V  I  C  C  C  Q  F  Q  R  L  A  F  D  K  *  *  D  E  R  P  F  V  P  T  I  R  H  *  L  F  S  Q  M  E  G  K  T  S   : D  P  D  D  S  F  K  R  *  R  T  *  A  P  Y  A  T  T  L  F  N  C  Y  S   : G  V  R  A  G  L  L  A  Y  T  N  S  Y  W  R  *  P  *  D  T  K  T  V  G  M  C  Y  Q  E  K  S  T  A  L  C  L  S  M  N  W  E  S  N  H  *  H  I  N  V  I  S  G  T  A  S  V  K  Q  P  C  M  S  A  F  F  L  *  R  S  L  *  F  E  L  L  I  G  C  C  R  W  R  S  G  R  S  L  N  A  K  V  S  G  Y  S  Q  R  L  Y  N  S  L  V  L  L  S  C  I  L  V  F  A  C  V  F  W  S  I  L  S  I  F  L  *  Q  F  C  Q  L  Q  V  L  E  G  K  S  S  A  T  I  E  E  S  C  F  *  N  S  K  R  I  L  L  H  F  N  I  *  F  A  G  P  *  V  Q  E  E  K  Q  L  M  K  F  K  L  F  I  F  E  *  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101858" stop="100725"/>
                    <exon start="99363" stop="99274"/>
                    <exon start="98766" stop="98585"/>
                    <exon start="97851" stop="97731"/>
                    <exon start="97294" stop="97223"/>
                    <exon start="97126" stop="97013"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1710</number_coding_nucleotides>
                  <number_encoded_amino_acids>570</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRVMLVRRMGYISPSLSIKTSPFFSILTKNPFPFHHLHPIQFFKPIHTKSPQTHLFSMNQKPHFTTSAAFLQEPTNTKTLSNRSAKKARRDAPESVLRHQLDQCSKRGDLQEAIRLYEEAKLNNITLNVHHYNVLLYLCSSGSGTEGCGIEKGFLIFKQMGVNGVAPNEATFTSAARLAVAKQDPEMAFDLVKKMKSFGVPPKLRSYGPALFGFCEKGMADKAYEVDVHMGESGVVAEEAELSALLKVSSFSKKADKVYEMMHRLRASVRQVCEETVGVVEDWFNSEYAAEVGLQDWDARKVKEGVVKGGGGWHGQGWLGKGNWTVVRAEMDSSGVCRSCGEKLVCIDIDPKETENFANSLAELASEREVKANFVQFQDWLQKHGPFDAVVDGANVGLITQRNFNFSQLRSVVNKLRQMSESKKLPLVILHKSRTTGGPAQHPNNKKLLESWKKAGALYATPHGSNDDWYWLYAAVSSKGLLLTNDEMRDHLFQLLGTSFFPRWKEKHQIRMTASRDDGLKLHMPPPYSIVIQESEQGCWHIPTLTGDDLEIPRQWVCATRKKALHSVFR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="103638" PGL_stop="104073"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103638" e_stop="104073"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="103638" e_stop="104073" e_length="436"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103638" stop="104073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282303" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTGTACTCGGACAATTCATGGTCATAAACCCCATAAAAACCTCAATCCGCCATTATCACTCTGTGGAGCAAATGCAATGAAAACTCTAAACTCCACCCACATCCGCCGCTCCATTATCTCTCTAACCTCTCTTGTCTCACATCTCACTACCAAAAACCCTACTTTTAAGCTCTTCTCCACTCAATCATGGCTGAAATCAACGCGAGGAAAACCCCTAATGAAATTGCCTAAGCTGAATTACCCACCCAAACAACCAACACCCCTCTTTTCACCCCCTCCTTCAACCCACCAACCCGAAACCCCTAATTACTGCCCAACTGATTTCACCACCCTATCTGAGATTCTACGTGACCCCACCATCCCACCTGGCCCTGCTCTTGAAAATGCCTTGGATAGAGCTGGGATCGAAGTAAATGAGTGTATGTTTCTTCAAC</gDNA_template>
            <first_frame> F  C  T  R  T  I  H  G  H  K  P  H  K  N  L  N  P  P  L  S  L  C  G  A  N  A  M  K  T  L  N  S  T  H  I  R  R  S  I  I  S  L  T  S  L  V  S  H  L  T  T  K  N  P  T  F  K  L  F  S  T  Q  S  W  L  K  S  T  R  G  K  P  L  M  K  L  P  K  L  N  Y  P  P  K  Q  P  T  P  L  F  S  P  P  P  S  T  H  Q  P  E  T  P  N  Y  C  P  T  D  F  T  T  L  S  E  I  L  R  D  P  T  I  P  P  G  P  A  L  E  N  A  L  D  R  A  G  I  E  V  N  E  C  M  F  L  Q  </first_frame>
            <second_frame>  F  V  L  G  Q  F  M  V  I  N  P  I  K  T  S  I  R  H  Y  H  S  V  E  Q  M  Q  *  K  L  *  T  P  P  T  S  A  A  P  L  S  L  *  P  L  L  S  H  I  S  L  P  K  T  L  L  L  S  S  S  P  L  N  H  G  *  N  Q  R  E  E  N  P  *  *  N  C  L  S  *  I  T  H  P  N  N  Q  H  P  S  F  H  P  L  L  Q  P  T  N  P  K  P  L  I  T  A  Q  L  I  S  P  P  Y  L  R  F  Y  V  T  P  P  S  H  L  A  L  L  L  K  M  P  W  I  E  L  G  S  K  *  M  S  V  C  F  F  N </second_frame>
            <third_frame>   L  Y  S  D  N  S  W  S  *  T  P  *  K  P  Q  S  A  I  I  T  L  W  S  K  C  N  E  N  S  K  L  H  P  H  P  P  L  H  Y  L  S  N  L  S  C  L  T  S  H  Y  Q  K  P  Y  F  *  A  L  L  H  S  I  M  A  E  I  N  A  R  K  T  P  N  E  I  A  *  A  E  L  P  T  Q  T  T  N  T  P  L  F  T  P  S  F  N  P  P  T  R  N  P  *  L  L  P  N  *  F  H  H  P  I  *  D  S  T  *  P  H  H  P  T  W  P  C  S  *  K  C  L  G  *  S  W  D  R  S  K  *  V  Y  V  S  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103638" stop="104072"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>435</number_coding_nucleotides>
                  <number_encoded_amino_acids>145</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCTRTIHGHKPHKNLNPPLSLCGANAMKTLNSTHIRRSIISLTSLVSHLTTKNPTFKLFSTQSWLKSTRGKPLMKLPKLNYPPKQPTPLFSPPPSTHQPETPNYCPTDFTTLSEILRDPTIPPGPALENALDRAGIEVNECMFLQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="115493" PGL_stop="104769"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="115493" e_stop="115320"/>
            <exon e_start="114677" e_stop="114417"/>
            <exon e_start="114201" e_stop="114076"/>
            <exon e_start="113946" e_stop="113743"/>
            <exon e_start="113108" e_stop="112939"/>
            <exon e_start="112810" e_stop="112675"/>
            <exon e_start="111953" e_stop="111837"/>
            <exon e_start="111713" e_stop="111594"/>
            <exon e_start="111513" e_stop="111415"/>
            <exon e_start="111332" e_stop="111243"/>
            <exon e_start="110411" e_stop="110324"/>
            <exon e_start="109842" e_stop="109754"/>
            <exon e_start="109595" e_stop="109521"/>
            <exon e_start="107685" e_stop="107275"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.868" acc_prob="0.990" e_score="0.983"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.946" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="115493" e_stop="115320" e_length="174"/>
          </exon>
          <intron i_serial="1" don_prob="0.868" acc_prob="0.990">
            <gDNA_intron_boundary i_start="115319" i_stop="114678" i_length="642"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="114677" e_stop="114417" e_length="261"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="114416" i_stop="114202" i_length="215"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="114201" e_stop="114076" e_length="126"/>
          </exon>
          <intron i_serial="3" don_prob="0.946" acc_prob="0.990">
            <gDNA_intron_boundary i_start="114075" i_stop="113947" i_length="129"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="113946" e_stop="113743" e_length="204"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="113742" i_stop="113109" i_length="634"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="113108" e_stop="112939" e_length="170"/>
          </exon>
          <intron i_serial="5" don_prob="0.961" acc_prob="0.971">
            <gDNA_intron_boundary i_start="112938" i_stop="112811" i_length="128"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="112810" e_stop="112675" e_length="136"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.982">
            <gDNA_intron_boundary i_start="112674" i_stop="111954" i_length="721"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="111953" e_stop="111837" e_length="117"/>
          </exon>
          <intron i_serial="7" don_prob="0.957" acc_prob="0.991">
            <gDNA_intron_boundary i_start="111836" i_stop="111714" i_length="123"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="111713" e_stop="111594" e_length="120"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.986">
            <gDNA_intron_boundary i_start="111593" i_stop="111514" i_length="80"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="111513" e_stop="111415" e_length="99"/>
          </exon>
          <intron i_serial="9" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="111414" i_stop="111333" i_length="82"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="111332" e_stop="111243" e_length="90"/>
          </exon>
          <intron i_serial="10" don_prob="0.976" acc_prob="0.998">
            <gDNA_intron_boundary i_start="111242" i_stop="110412" i_length="831"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="110411" e_stop="110324" e_length="88"/>
          </exon>
          <intron i_serial="11" don_prob="0.960" acc_prob="0.991">
            <gDNA_intron_boundary i_start="110323" i_stop="109843" i_length="481"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="109842" e_stop="109754" e_length="89"/>
          </exon>
          <intron i_serial="12" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="109753" i_stop="109596" i_length="158"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="109595" e_stop="109521" e_length="75"/>
          </exon>
          <intron i_serial="13" don_prob="0.987" acc_prob="0.990">
            <gDNA_intron_boundary i_start="109520" i_stop="107686" i_length="1835"/>
          </intron>
          <exon e_serial="14" e_score="0.988">
            <gDNA_exon_boundary e_start="107685" e_stop="107275" e_length="411"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115493" stop="115320"/>
              <exon start="114677" stop="114417"/>
              <exon start="114201" stop="114076"/>
              <exon start="113946" stop="113743"/>
              <exon start="113108" stop="112939"/>
              <exon start="112810" stop="112675"/>
              <exon start="111953" stop="111837"/>
              <exon start="111713" stop="111594"/>
              <exon start="111513" stop="111415"/>
              <exon start="111332" stop="111243"/>
              <exon start="110411" stop="110324"/>
              <exon start="109842" stop="109754"/>
              <exon start="109595" stop="109521"/>
              <exon start="107685" stop="107324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746435" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115405" stop="115320"/>
              <exon start="114677" stop="114417"/>
              <exon start="114201" stop="114076"/>
              <exon start="113946" stop="113894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115400" stop="115320"/>
              <exon start="114677" stop="114417"/>
              <exon start="114201" stop="114173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115391" stop="115320"/>
              <exon start="114677" stop="114417"/>
              <exon start="114201" stop="114076"/>
              <exon start="113946" stop="113743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115388" stop="115320"/>
              <exon start="114677" stop="114542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115387" stop="115320"/>
              <exon start="114677" stop="114417"/>
              <exon start="114201" stop="114076"/>
              <exon start="113946" stop="113838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115387" stop="115320"/>
              <exon start="114677" stop="114417"/>
              <exon start="114201" stop="114146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115381" stop="115320"/>
              <exon start="114677" stop="114417"/>
              <exon start="114201" stop="114076"/>
              <exon start="113946" stop="113743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115367" stop="115320"/>
              <exon start="114677" stop="114417"/>
              <exon start="114201" stop="114076"/>
              <exon start="113946" stop="113753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115363" stop="115320"/>
              <exon start="114677" stop="114417"/>
              <exon start="114201" stop="114076"/>
              <exon start="113946" stop="113743"/>
              <exon start="113108" stop="113003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115357" stop="115320"/>
              <exon start="114677" stop="114417"/>
              <exon start="114201" stop="114076"/>
              <exon start="113946" stop="113752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114677" stop="114417"/>
              <exon start="114201" stop="114076"/>
              <exon start="113946" stop="113743"/>
              <exon start="113108" stop="112991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114510" stop="114417"/>
              <exon start="114201" stop="114076"/>
              <exon start="113946" stop="113743"/>
              <exon start="113108" stop="112939"/>
              <exon start="112810" stop="112705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114435" stop="114417"/>
              <exon start="114201" stop="114076"/>
              <exon start="113946" stop="113743"/>
              <exon start="113108" stop="112939"/>
              <exon start="112810" stop="112718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114151" stop="114076"/>
              <exon start="113946" stop="113743"/>
              <exon start="113108" stop="112939"/>
              <exon start="112810" stop="112675"/>
              <exon start="111953" stop="111873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113906" stop="113743"/>
              <exon start="113108" stop="112939"/>
              <exon start="112810" stop="112675"/>
              <exon start="111953" stop="111837"/>
              <exon start="111713" stop="111594"/>
              <exon start="111513" stop="111451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113860" stop="113743"/>
              <exon start="113108" stop="112939"/>
              <exon start="112810" stop="112733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112947" stop="112939"/>
              <exon start="112810" stop="112675"/>
              <exon start="111953" stop="111837"/>
              <exon start="111713" stop="111594"/>
              <exon start="111513" stop="111415"/>
              <exon start="111332" stop="111281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112730" stop="112675"/>
              <exon start="111953" stop="111837"/>
              <exon start="111713" stop="111594"/>
              <exon start="111513" stop="111415"/>
              <exon start="111332" stop="111243"/>
              <exon start="110411" stop="110358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111331" stop="111243"/>
              <exon start="110411" stop="110324"/>
              <exon start="109842" stop="109754"/>
              <exon start="109595" stop="109521"/>
              <exon start="107685" stop="107439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111298" stop="111243"/>
              <exon start="110411" stop="110324"/>
              <exon start="109842" stop="109754"/>
              <exon start="109595" stop="109521"/>
              <exon start="107685" stop="107280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110340" stop="110324"/>
              <exon start="109842" stop="109754"/>
              <exon start="109595" stop="109521"/>
              <exon start="107685" stop="107320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109823" stop="109754"/>
              <exon start="109595" stop="109521"/>
              <exon start="107685" stop="107308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429392" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107650" stop="107324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107629" stop="107275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107629" stop="107275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107600" stop="107324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E593586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107597" stop="107292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216064" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAATACCAAGAAGCACAAAAAAGGTTCTTGATTATTTTTTTTTATTAGACAGTAAAATAAAAGTACAATATTGCTAAACCTAAGGAGCAAAGGAAAAACCCTAGAATAGAAGCTCACTTTTCTCCTCAAGATCGAAGTCGGATCAAATCGCCTCCAACAATGTCTGCCATGATG : CAACCTCAGATCATATTGCTTAAGGAAGGGACAGACACGTCTCAGGGGAAGGCACAGTTGGTGAGCAACATAAATGCATGTATGGCTGTGGCTGATGTGGTGCGTACCACCCTTGGTCCTAGGGGTATGGACAAGTTGATCCACGACGATAAAGGAAACACCACTATTTCAAATGATGGTGCCACTATAATGAAGCTTCTAGATATAATTCATCCTGCAGCAAAAATACTTGTTGACATCGCCAAGTCTCAAGACTCTGAG : GTTGGTGATGGAACCACTACAGTTGTTCTGCTTGCAGGAGAATTTTTAAAGGAAGCCAAGCCTTTTGTCGAAGAGGGTGTCCACCCTCAAAATCTTATTCGTAGTTATCGAACCGCTTCTAATATG : GCAATCGAGAAGGTAAAAGAATTGGCTGTTAGCATAGAGGGAAAAAGTTTGGAAGAAAAGAAAAGTCTGCTTGCAAAGTGTGCTGCTACAACTCTGTCATCAAAGCTCATTGGAGGGGAAAAGGAATTCTTTGCATCCATGGTTGTGGATGCTGTTCTTGCAATCGGAACTGATGATAGGCTGAACATGATCGGAATTAAGAAG : GTCCCTGGAGGTACTATGCGGGATTCTTTCCTTGTAAATGGTGTTGCCTTTAAGAAGACATTTTCCTATGCTGGTTTTGAACAGCAGCCAAAGAAGTTTGTAAACCCCAAGATACTTTTACTGAACATAGAGTTGGAGCTAAAATCAGAAAAAGAAAATGCAGAGATAAG : GCTCTCAGATCCAGCGCAATATCAGTCAATTGTTGATGCAGAGTGGAATATCATTTATGACAAGTTGGATAAATGTGTAAAGAGTGGTGCCAAAGTTGTTTTGTCTAGACTCGCTATTGGTGATCTGGCCACACAG : TATTTTGCAGACCGAGATATATTCTGTGCTGGTCGTGTCTCTGAAGAGGATCTGCAGCGGGTAGCTGCTGCTGCTGGTGGAACAGTGCAGACAACTGTGAACAATGTTATTGATGAG : GTTCTTGGCTCTTGTGAGATTTTTGAGGAGAAGCAAGTTGGAAATGAGAGATTCAATATATTTAGTGGATGTCCCTCTGGCAAGACCGCCACTATTGTCCTTCGTGGTGGAGCAGATCAG : TTCATTGAGGAAGCTGAGAGAAGCTTGCATGATGCTATTATGATTGTTAGAAGAGCTGTGAAAAACTCTACGGTTGTTCCTGGAGGTGGTGCAATAGAT : ATGGAAATAAGCCGTTTCTTGAGGCACCATGCTCGAACAATTCAAGGGAAATCTCAGCTCTTCATAAACTCTTATGCAAAAGCTCTTGAG : ATTATCCCCCGTCAGCTATGTGACAATGCTGGTTTTGATGCAACTGATGTGCTGAACAAGCTCAGACAAAAACACGCTCTTCCGTCTG : GTGAGGGTGCACCTTATGGAGTTGACATTAATACTGGTGGCATAGCTGATTCATTTGCCAACTTTGTTTGGGAGCCAGCAGTCGTGAAG : ATAAATGCCATCAATGCAGCCACTGAAGCTGCATGCCTCATTCTGAGTGTAGATGAGACAGTGAAGAATCCTAAG : TCTGAGAGTGCACAAGGAGATGCTGCTGCAAGTGCCATGGGTGGTGGTAGAGGGCGTGGACGTGGACGTGGAATGAGACGGCGATAGATTTCATAAGTTCTTTTGCAGATTTTGCTATGATTTTTATGTAGTGTTTGCTTTTTTCCCCATGTTTGCTCCTCCCTTCTGTAGTTCTAGTTGTCTCCCTCGATCAAAATGTTCAAATTTGGACATCGATTCTCATATAGCAACCGAGAAACAATCAAAACAGAGCTGTGTTAAGTTCAGGCAACATCCAGTAAACTAAATTATTTTTGTTGCTGTCAGTTTTGCAATGTACGAAGCCTGCCGCTGGATATATAATATTCTGTGTATTAAACTTCATCTTGTGTTGAAAAGTTCACAAATTTACGACATAAAAACTTTTAATTT</gDNA_template>
            <first_frame> *  Y  Q  E  A  Q  K  R  F  L  I  I  F  F  Y  *  T  V  K  *  K  Y  N  I  A  K  P  K  E  Q  R  K  N  P  R  I  E  A  H  F  S  P  Q  D  R  S  R  I  K  S  P  P  T  M  S  A  M  M  :  Q  P  Q  I  I  L  L  K  E  G  T  D  T  S  Q  G  K  A  Q  L  V  S  N  I  N  A  C  M  A  V  A  D  V  V  R  T  T  L  G  P  R  G  M  D  K  L  I  H  D  D  K  G  N  T  T  I  S  N  D  G  A  T  I  M  K  L  L  D  I  I  H  P  A  A  K  I  L  V  D  I  A  K  S  Q  D  S  E  :  V  G  D  G  T  T  T  V  V  L  L  A  G  E  F  L  K  E  A  K  P  F  V  E  E  G  V  H  P  Q  N  L  I  R  S  Y  R  T  A  S  N  M  :  A  I  E  K  V  K  E  L  A  V  S  I  E  G  K  S  L  E  E  K  K  S  L  L  A  K  C  A  A  T  T  L  S  S  K  L  I  G  G  E  K  E  F  F  A  S  M  V  V  D  A  V  L  A  I  G  T  D  D  R  L  N  M  I  G  I  K  K  :  V  P  G  G  T  M  R  D  S  F  L  V  N  G  V  A  F  K  K  T  F  S  Y  A  G  F  E  Q  Q  P  K  K  F  V  N  P  K  I  L  L  L  N  I  E  L  E  L  K  S  E  K  E  N  A  E  I  R :   L  S  D  P  A  Q  Y  Q  S  I  V  D  A  E  W  N  I  I  Y  D  K  L  D  K  C  V  K  S  G  A  K  V  V  L  S  R  L  A  I  G  D  L  A  T  Q  :  Y  F  A  D  R  D  I  F  C  A  G  R  V  S  E  E  D  L  Q  R  V  A  A  A  A  G  G  T  V  Q  T  T  V  N  N  V  I  D  E  :  V  L  G  S  C  E  I  F  E  E  K  Q  V  G  N  E  R  F  N  I  F  S  G  C  P  S  G  K  T  A  T  I  V  L  R  G  G  A  D  Q  :  F  I  E  E  A  E  R  S  L  H  D  A  I  M  I  V  R  R  A  V  K  N  S  T  V  V  P  G  G  G  A  I  D  :  M  E  I  S  R  F  L  R  H  H  A  R  T  I  Q  G  K  S  Q  L  F  I  N  S  Y  A  K  A  L  E  :  I  I  P  R  Q  L  C  D  N  A  G  F  D  A  T  D  V  L  N  K  L  R  Q  K  H  A  L  P  S   : G  E  G  A  P  Y  G  V  D  I  N  T  G  G  I  A  D  S  F  A  N  F  V  W  E  P  A  V  V  K  :  I  N  A  I  N  A  A  T  E  A  A  C  L  I  L  S  V  D  E  T  V  K  N  P  K  :  S  E  S  A  Q  G  D  A  A  A  S  A  M  G  G  G  R  G  R  G  R  G  R  G  M  R  R  R  *  I  S  *  V  L  L  Q  I  L  L  *  F  L  C  S  V  C  F  F  P  H  V  C  S  S  L  L  *  F  *  L  S  P  S  I  K  M  F  K  F  G  H  R  F  S  Y  S  N  R  E  T  I  K  T  E  L  C  *  V  Q  A  T  S  S  K  L  N  Y  F  C  C  C  Q  F  C  N  V  R  S  L  P  L  D  I  *  Y  S  V  Y  *  T  S  S  C  V  E  K  F  T  N  L  R  H  K  N  F  *  F </first_frame>
            <second_frame>  N  T  K  K  H  K  K  G  S  *  L  F  F  F  I  R  Q  *  N  K  S  T  I  L  L  N  L  R  S  K  G  K  T  L  E  *  K  L  T  F  L  L  K  I  E  V  G  S  N  R  L  Q  Q  C  L  P  *  C :   N  L  R  S  Y  C  L  R  K  G  Q  T  R  L  R  G  R  H  S  W  *  A  T  *  M  H  V  W  L  W  L  M  W  C  V  P  P  L  V  L  G  V  W  T  S  *  S  T  T  I  K  E  T  P  L  F  Q  M  M  V  P  L  *  *  S  F  *  I  *  F  I  L  Q  Q  K  Y  L  L  T  S  P  S  L  K  T  L  R :   L  V  M  E  P  L  Q  L  F  C  L  Q  E  N  F  *  R  K  P  S  L  L  S  K  R  V  S  T  L  K  I  L  F  V  V  I  E  P  L  L  I  W :   Q  S  R  R  *  K  N  W  L  L  A  *  R  E  K  V  W  K  K  R  K  V  C  L  Q  S  V  L  L  Q  L  C  H  Q  S  S  L  E  G  K  R  N  S  L  H  P  W  L  W  M  L  F  L  Q  S  E  L  M  I  G  *  T  *  S  E  L  R  R :   S  L  E  V  L  C  G  I  L  S  L  *  M  V  L  P  L  R  R  H  F  P  M  L  V  L  N  S  S  Q  R  S  L  *  T  P  R  Y  F  Y  *  T  *  S  W  S  *  N  Q  K  K  K  M  Q  R  *   : G  S  Q  I  Q  R  N  I  S  Q  L  L  M  Q  S  G  I  S  F  M  T  S  W  I  N  V  *  R  V  V  P  K  L  F  C  L  D  S  L  L  V  I  W  P  H  S :   I  L  Q  T  E  I  Y  S  V  L  V  V  S  L  K  R  I  C  S  G  *  L  L  L  L  V  E  Q  C  R  Q  L  *  T  M  L  L  M  R :   F  L  A  L  V  R  F  L  R  R  S  K  L  E  M  R  D  S  I  Y  L  V  D  V  P  L  A  R  P  P  L  L  S  F  V  V  E  Q  I  S :   S  L  R  K  L  R  E  A  C  M  M  L  L  *  L  L  E  E  L  *  K  T  L  R  L  F  L  E  V  V  Q  *  I :   W  K  *  A  V  S  *  G  T  M  L  E  Q  F  K  G  N  L  S  S  S  *  T  L  M  Q  K  L  L  R :   L  S  P  V  S  Y  V  T  M  L  V  L  M  Q  L  M  C  *  T  S  S  D  K  N  T  L  F  R  L  :  V  R  V  H  L  M  E  L  T  L  I  L  V  A  *  L  I  H  L  P  T  L  F  G  S  Q  Q  S  *  R :   *  M  P  S  M  Q  P  L  K  L  H  A  S  F  *  V  *  M  R  Q  *  R  I  L  S :   L  R  V  H  K  E  M  L  L  Q  V  P  W  V  V  V  E  G  V  D  V  D  V  E  *  D  G  D  R  F  H  K  F  F  C  R  F  C  Y  D  F  Y  V  V  F  A  F  F  P  M  F  A  P  P  F  C  S  S  S  C  L  P  R  S  K  C  S  N  L  D  I  D  S  H  I  A  T  E  K  Q  S  K  Q  S  C  V  K  F  R  Q  H  P  V  N  *  I  I  F  V  A  V  S  F  A  M  Y  E  A  C  R  W  I  Y  N  I  L  C  I  K  L  H  L  V  L  K  S  S  Q  I  Y  D  I  K  T  F  N   </second_frame>
            <third_frame>   I  P  R  S  T  K  K  V  L  D  Y  F  F  L  L  D  S  K  I  K  V  Q  Y  C  *  T  *  G  A  K  E  K  P  *  N  R  S  S  L  F  S  S  R  S  K  S  D  Q  I  A  S  N  N  V  C  H  D   : A  T  S  D  H  I  A  *  G  R  D  R  H  V  S  G  E  G  T  V  G  E  Q  H  K  C  M  Y  G  C  G  *  C  G  A  Y  H  P  W  S  *  G  Y  G  Q  V  D  P  R  R  *  R  K  H  H  Y  F  K  *  W  C  H  Y  N  E  A  S  R  Y  N  S  S  C  S  K  N  T  C  *  H  R  Q  V  S  R  L  *   : G  W  *  W  N  H  Y  S  C  S  A  C  R  R  I  F  K  G  S  Q  A  F  C  R  R  G  C  P  P  S  K  S  Y  S  *  L  S  N  R  F  *  Y   : G  N  R  E  G  K  R  I  G  C  *  H  R  G  K  K  F  G  R  K  E  K  S  A  C  K  V  C  C  Y  N  S  V  I  K  A  H  W  R  G  K  G  I  L  C  I  H  G  C  G  C  C  S  C  N  R  N  *  *  *  A  E  H  D  R  N  *  E   : G  P  W  R  Y  Y  A  G  F  F  P  C  K  W  C  C  L  *  E  D  I  F  L  C  W  F  *  T  A  A  K  E  V  C  K  P  Q  D  T  F  T  E  H  R  V  G  A  K  I  R  K  R  K  C  R  D  K  :  A  L  R  S  S  A  I  S  V  N  C  *  C  R  V  E  Y  H  L  *  Q  V  G  *  M  C  K  E  W  C  Q  S  C  F  V  *  T  R  Y  W  *  S  G  H  T   : V  F  C  R  P  R  Y  I  L  C  W  S  C  L  *  R  G  S  A  A  G  S  C  C  C  W  W  N  S  A  D  N  C  E  Q  C  Y  *  *   : G  S  W  L  L  *  D  F  *  G  E  A  S  W  K  *  E  I  Q  Y  I  *  W  M  S  L  W  Q  D  R  H  Y  C  P  S  W  W  S  R  S   : V  H  *  G  S  *  E  K  L  A  *  C  Y  Y  D  C  *  K  S  C  E  K  L  Y  G  C  S  W  R  W  C  N  R   : Y  G  N  K  P  F  L  E  A  P  C  S  N  N  S  R  E  I  S  A  L  H  K  L  L  C  K  S  S  *   : D  Y  P  P  S  A  M  *  Q  C  W  F  *  C  N  *  C  A  E  Q  A  Q  T  K  T  R  S  S  V  W :   *  G  C  T  L  W  S  *  H  *  Y  W  W  H  S  *  F  I  C  Q  L  C  L  G  A  S  S  R  E   : D  K  C  H  Q  C  S  H  *  S  C  M  P  H  S  E  C  R  *  D  S  E  E  S  *   : V  *  E  C  T  R  R  C  C  C  K  C  H  G  W  W  *  R  A  W  T  W  T  W  N  E  T  A  I  D  F  I  S  S  F  A  D  F  A  M  I  F  M  *  C  L  L  F  S  P  C  L  L  L  P  S  V  V  L  V  V  S  L  D  Q  N  V  Q  I  W  T  S  I  L  I  *  Q  P  R  N  N  Q  N  R  A  V  L  S  S  G  N  I  Q  *  T  K  L  F  L  L  L  S  V  L  Q  C  T  K  P  A  A  G  Y  I  I  F  C  V  L  N  F  I  L  C  *  K  V  H  K  F  T  T  *  K  L  L  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115433" stop="115320"/>
                    <exon start="114677" stop="114417"/>
                    <exon start="114201" stop="114076"/>
                    <exon start="113946" stop="113743"/>
                    <exon start="113108" stop="112939"/>
                    <exon start="112810" stop="112675"/>
                    <exon start="111953" stop="111837"/>
                    <exon start="111713" stop="111594"/>
                    <exon start="111513" stop="111415"/>
                    <exon start="111332" stop="111243"/>
                    <exon start="110411" stop="110324"/>
                    <exon start="109842" stop="109754"/>
                    <exon start="109595" stop="109521"/>
                    <exon start="107685" stop="107599"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1773</number_coding_nucleotides>
                  <number_encoded_amino_acids>591</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KYNIAKPKEQRKNPRIEAHFSPQDRSRIKSPPTMSAMMQPQIILLKEGTDTSQGKAQLVSNINACMAVADVVRTTLGPRGMDKLIHDDKGNTTISNDGATIMKLLDIIHPAAKILVDIAKSQDSEVGDGTTTVVLLAGEFLKEAKPFVEEGVHPQNLIRSYRTASNMAIEKVKELAVSIEGKSLEEKKSLLAKCAATTLSSKLIGGEKEFFASMVVDAVLAIGTDDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFVNPKILLLNIELELKSEKENAEIRLSDPAQYQSIVDAEWNIIYDKLDKCVKSGAKVVLSRLAIGDLATQYFADRDIFCAGRVSEEDLQRVAAAAGGTVQTTVNNVIDEVLGSCEIFEEKQVGNERFNIFSGCPSGKTATIVLRGGADQFIEEAERSLHDAIMIVRRAVKNSTVVPGGGAIDMEISRFLRHHARTIQGKSQLFINSYAKALEIIPRQLCDNAGFDATDVLNKLRQKHALPSGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKSESAQGDAAASAMGGGRGRGRGRGMRRR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107609" stop="107400"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DGDRFHKFFCRFCYDFYVVFAFFPMFAPPFCSSSCLPRSKCSNLDIDSHIATEKQSKQSCVKFRQHPVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="115405" e_stop="115320"/>
            <exon e_start="114677" e_stop="114417"/>
            <exon e_start="114201" e_stop="114076"/>
            <exon e_start="113946" e_stop="113743"/>
            <exon e_start="113108" e_stop="112939"/>
            <exon e_start="112810" e_stop="112675"/>
            <exon e_start="111953" e_stop="111837"/>
            <exon e_start="111713" e_stop="111594"/>
            <exon e_start="111513" e_stop="111415"/>
            <exon e_start="111332" e_stop="111243"/>
            <exon e_start="110411" e_stop="110324"/>
            <exon e_start="109842" e_stop="109754"/>
            <exon e_start="109595" e_stop="109521"/>
            <exon e_start="107685" e_stop="107371"/>
            <exon e_start="106865" e_stop="106858"/>
            <exon e_start="105381" e_stop="105362"/>
            <exon e_start="105302" e_stop="105287"/>
            <exon e_start="104795" e_stop="104769"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.868" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.946" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.971" e_score="0.994"/>
          <exon-intron don_prob="0.998" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.986" e_score="0.992"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="0.990"/>
          <exon-intron don_prob="0.976" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.210" acc_prob="0.953" e_score="0.968"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.625"/>
          <exon-intron don_prob="0.204" acc_prob="0.000" e_score="0.750"/>
          <exon-intron don_prob="0.981" acc_prob="0.703" e_score="0.750"/>
          <exon-only e_score="0.481"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="115405" e_stop="115320" e_length="86"/>
          </exon>
          <intron i_serial="1" don_prob="0.868" acc_prob="0.990">
            <gDNA_intron_boundary i_start="115319" i_stop="114678" i_length="642"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="114677" e_stop="114417" e_length="261"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="114416" i_stop="114202" i_length="215"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="114201" e_stop="114076" e_length="126"/>
          </exon>
          <intron i_serial="3" don_prob="0.946" acc_prob="0.990">
            <gDNA_intron_boundary i_start="114075" i_stop="113947" i_length="129"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="113946" e_stop="113743" e_length="204"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="113742" i_stop="113109" i_length="634"/>
          </intron>
          <exon e_serial="5" e_score="0.994">
            <gDNA_exon_boundary e_start="113108" e_stop="112939" e_length="170"/>
          </exon>
          <intron i_serial="5" don_prob="0.961" acc_prob="0.971">
            <gDNA_intron_boundary i_start="112938" i_stop="112811" i_length="128"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="112810" e_stop="112675" e_length="136"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.982">
            <gDNA_intron_boundary i_start="112674" i_stop="111954" i_length="721"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="111953" e_stop="111837" e_length="117"/>
          </exon>
          <intron i_serial="7" don_prob="0.957" acc_prob="0.991">
            <gDNA_intron_boundary i_start="111836" i_stop="111714" i_length="123"/>
          </intron>
          <exon e_serial="8" e_score="0.992">
            <gDNA_exon_boundary e_start="111713" e_stop="111594" e_length="120"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.986">
            <gDNA_intron_boundary i_start="111593" i_stop="111514" i_length="80"/>
          </intron>
          <exon e_serial="9" e_score="0.990">
            <gDNA_exon_boundary e_start="111513" e_stop="111415" e_length="99"/>
          </exon>
          <intron i_serial="9" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="111414" i_stop="111333" i_length="82"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="111332" e_stop="111243" e_length="90"/>
          </exon>
          <intron i_serial="10" don_prob="0.976" acc_prob="0.998">
            <gDNA_intron_boundary i_start="111242" i_stop="110412" i_length="831"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="110411" e_stop="110324" e_length="88"/>
          </exon>
          <intron i_serial="11" don_prob="0.960" acc_prob="0.991">
            <gDNA_intron_boundary i_start="110323" i_stop="109843" i_length="481"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="109842" e_stop="109754" e_length="89"/>
          </exon>
          <intron i_serial="12" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="109753" i_stop="109596" i_length="158"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="109595" e_stop="109521" e_length="75"/>
          </exon>
          <intron i_serial="13" don_prob="0.987" acc_prob="0.990">
            <gDNA_intron_boundary i_start="109520" i_stop="107686" i_length="1835"/>
          </intron>
          <exon e_serial="14" e_score="0.968">
            <gDNA_exon_boundary e_start="107685" e_stop="107371" e_length="315"/>
          </exon>
          <intron i_serial="14" don_prob="0.210" acc_prob="0.953">
            <gDNA_intron_boundary i_start="107370" i_stop="106866" i_length="505"/>
          </intron>
          <exon e_serial="15" e_score="0.625">
            <gDNA_exon_boundary e_start="106865" e_stop="106858" e_length="8"/>
          </exon>
          <intron i_serial="15" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="106857" i_stop="105382" i_length="1476"/>
          </intron>
          <exon e_serial="16" e_score="0.750">
            <gDNA_exon_boundary e_start="105381" e_stop="105362" e_length="20"/>
          </exon>
          <intron i_serial="16" don_prob="0.204" acc_prob="0.000">
            <gDNA_intron_boundary i_start="105361" i_stop="105303" i_length="59"/>
          </intron>
          <exon e_serial="17" e_score="0.750">
            <gDNA_exon_boundary e_start="105302" e_stop="105287" e_length="16"/>
          </exon>
          <intron i_serial="17" don_prob="0.981" acc_prob="0.703">
            <gDNA_intron_boundary i_start="105286" i_stop="104796" i_length="491"/>
          </intron>
          <exon e_serial="18" e_score="0.481">
            <gDNA_exon_boundary e_start="104795" e_stop="104769" e_length="27"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115405" stop="115320"/>
              <exon start="114677" stop="114417"/>
              <exon start="114201" stop="114076"/>
              <exon start="113946" stop="113894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115400" stop="115320"/>
              <exon start="114677" stop="114417"/>
              <exon start="114201" stop="114173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115391" stop="115320"/>
              <exon start="114677" stop="114417"/>
              <exon start="114201" stop="114076"/>
              <exon start="113946" stop="113743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115388" stop="115320"/>
              <exon start="114677" stop="114542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115387" stop="115320"/>
              <exon start="114677" stop="114417"/>
              <exon start="114201" stop="114076"/>
              <exon start="113946" stop="113838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115387" stop="115320"/>
              <exon start="114677" stop="114417"/>
              <exon start="114201" stop="114146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115381" stop="115320"/>
              <exon start="114677" stop="114417"/>
              <exon start="114201" stop="114076"/>
              <exon start="113946" stop="113743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115367" stop="115320"/>
              <exon start="114677" stop="114417"/>
              <exon start="114201" stop="114076"/>
              <exon start="113946" stop="113753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115363" stop="115320"/>
              <exon start="114677" stop="114417"/>
              <exon start="114201" stop="114076"/>
              <exon start="113946" stop="113743"/>
              <exon start="113108" stop="113003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115357" stop="115320"/>
              <exon start="114677" stop="114417"/>
              <exon start="114201" stop="114076"/>
              <exon start="113946" stop="113752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114677" stop="114417"/>
              <exon start="114201" stop="114076"/>
              <exon start="113946" stop="113743"/>
              <exon start="113108" stop="112991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114510" stop="114417"/>
              <exon start="114201" stop="114076"/>
              <exon start="113946" stop="113743"/>
              <exon start="113108" stop="112939"/>
              <exon start="112810" stop="112705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114435" stop="114417"/>
              <exon start="114201" stop="114076"/>
              <exon start="113946" stop="113743"/>
              <exon start="113108" stop="112939"/>
              <exon start="112810" stop="112718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114151" stop="114076"/>
              <exon start="113946" stop="113743"/>
              <exon start="113108" stop="112939"/>
              <exon start="112810" stop="112675"/>
              <exon start="111953" stop="111873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113906" stop="113743"/>
              <exon start="113108" stop="112939"/>
              <exon start="112810" stop="112675"/>
              <exon start="111953" stop="111837"/>
              <exon start="111713" stop="111594"/>
              <exon start="111513" stop="111451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113860" stop="113743"/>
              <exon start="113108" stop="112939"/>
              <exon start="112810" stop="112733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112947" stop="112939"/>
              <exon start="112810" stop="112675"/>
              <exon start="111953" stop="111837"/>
              <exon start="111713" stop="111594"/>
              <exon start="111513" stop="111415"/>
              <exon start="111332" stop="111281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112730" stop="112675"/>
              <exon start="111953" stop="111837"/>
              <exon start="111713" stop="111594"/>
              <exon start="111513" stop="111415"/>
              <exon start="111332" stop="111243"/>
              <exon start="110411" stop="110358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111416" stop="111415"/>
              <exon start="111332" stop="111243"/>
              <exon start="110411" stop="110324"/>
              <exon start="109842" stop="109754"/>
              <exon start="109595" stop="109521"/>
              <exon start="107685" stop="107371"/>
              <exon start="106865" stop="106858"/>
              <exon start="105381" stop="105362"/>
              <exon start="105302" stop="105287"/>
              <exon start="104795" stop="104769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111331" stop="111243"/>
              <exon start="110411" stop="110324"/>
              <exon start="109842" stop="109754"/>
              <exon start="109595" stop="109521"/>
              <exon start="107685" stop="107439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324786" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGGAAAAACCCTAGAATAGAAGCTCACTTTTCTCCTCAAGATCGAAGTCGGATCAAATCGCCTCCAACAATGTCTGCCATGATG : CAACCTCAGATCATATTGCTTAAGGAAGGGACAGACACGTCTCAGGGGAAGGCACAGTTGGTGAGCAACATAAATGCATGTATGGCTGTGGCTGATGTGGTGCGTACCACCCTTGGTCCTAGGGGTATGGACAAGTTGATCCACGACGATAAAGGAAACACCACTATTTCAAATGATGGTGCCACTATAATGAAGCTTCTAGATATAATTCATCCTGCAGCAAAAATACTTGTTGACATCGCCAAGTCTCAAGACTCTGAG : GTTGGTGATGGAACCACTACAGTTGTTCTGCTTGCAGGAGAATTTTTAAAGGAAGCCAAGCCTTTTGTCGAAGAGGGTGTCCACCCTCAAAATCTTATTCGTAGTTATCGAACCGCTTCTAATATG : GCAATCGAGAAGGTAAAAGAATTGGCTGTTAGCATAGAGGGAAAAAGTTTGGAAGAAAAGAAAAGTCTGCTTGCAAAGTGTGCTGCTACAACTCTGTCATCAAAGCTCATTGGAGGGGAAAAGGAATTCTTTGCATCCATGGTTGTGGATGCTGTTCTTGCAATCGGAACTGATGATAGGCTGAACATGATCGGAATTAAGAAG : GTCCCTGGAGGTACTATGCGGGATTCTTTCCTTGTAAATGGTGTTGCCTTTAAGAAGACATTTTCCTATGCTGGTTTTGAACAGCAGCCAAAGAAGTTTGTAAACCCCAAGATACTTTTACTGAACATAGAGTTGGAGCTAAAATCAGAAAAAGAAAATGCAGAGATAAG : GCTCTCAGATCCAGCGCAATATCAGTCAATTGTTGATGCAGAGTGGAATATCATTTATGACAAGTTGGATAAATGTGTAAAGAGTGGTGCCAAAGTTGTTTTGTCTAGACTCGCTATTGGTGATCTGGCCACACAG : TATTTTGCAGACCGAGATATATTCTGTGCTGGTCGTGTCTCTGAAGAGGATCTGCAGCGGGTAGCTGCTGCTGCTGGTGGAACAGTGCAGACAACTGTGAACAATGTTATTGATGAG : GTTCTTGGCTCTTGTGAGATTTTTGAGGAGAAGCAAGTTGGAAATGAGAGATTCAATATATTTAGTGGATGTCCCTCTGGCAAGACCGCCACTATTGTCCTTCGTGGTGGAGCAGATCAG : TTCATTGAGGAAGCTGAGAGAAGCTTGCATGATGCTATTATGATTGTTAGAAGAGCTGTGAAAAACTCTACGGTTGTTCCTGGAGGTGGTGCAATAGAT : ATGGAAATAAGCCGTTTCTTGAGGCACCATGCTCGAACAATTCAAGGGAAATCTCAGCTCTTCATAAACTCTTATGCAAAAGCTCTTGAG : ATTATCCCCCGTCAGCTATGTGACAATGCTGGTTTTGATGCAACTGATGTGCTGAACAAGCTCAGACAAAAACACGCTCTTCCGTCTG : GTGAGGGTGCACCTTATGGAGTTGACATTAATACTGGTGGCATAGCTGATTCATTTGCCAACTTTGTTTGGGAGCCAGCAGTCGTGAAG : ATAAATGCCATCAATGCAGCCACTGAAGCTGCATGCCTCATTCTGAGTGTAGATGAGACAGTGAAGAATCCTAAG : TCTGAGAGTGCACAAGGAGATGCTGCTGCAAGTGCCATGGGTGGTGGTAGAGGGCGTGGACGTGGACGTGGAATGAGACGGCGATAGATTTCATAAGTTCTTTTGCAGATTTTGCTATGATTTTTATGTAGTGTTTGCTTTTTTCCCCATGTTTGCTCCTCCCTTCTGTAGTTCTAGTTGTCTCCCTCGATCAAAATGTTCAAATTTGGACATCGATTCTCATATAGCAACCGAGAAACAATCAAAACAGAGCTGTGTTAAGTTCAGGCAACATCCAGTAAACTAAATTATTTTTGTTGCTGTCAGTTTTGCAAT : AAAGGCAA : AAAAAAAAGAAAAAACATGG : AAAAGATAAGAAAAAG : TTGAACCGTAGAAGAGGTCTTGCCCCC</gDNA_template>
            <first_frame> K  G  K  T  L  E  *  K  L  T  F  L  L  K  I  E  V  G  S  N  R  L  Q  Q  C  L  P  *  C :   N  L  R  S  Y  C  L  R  K  G  Q  T  R  L  R  G  R  H  S  W  *  A  T  *  M  H  V  W  L  W  L  M  W  C  V  P  P  L  V  L  G  V  W  T  S  *  S  T  T  I  K  E  T  P  L  F  Q  M  M  V  P  L  *  *  S  F  *  I  *  F  I  L  Q  Q  K  Y  L  L  T  S  P  S  L  K  T  L  R :   L  V  M  E  P  L  Q  L  F  C  L  Q  E  N  F  *  R  K  P  S  L  L  S  K  R  V  S  T  L  K  I  L  F  V  V  I  E  P  L  L  I  W :   Q  S  R  R  *  K  N  W  L  L  A  *  R  E  K  V  W  K  K  R  K  V  C  L  Q  S  V  L  L  Q  L  C  H  Q  S  S  L  E  G  K  R  N  S  L  H  P  W  L  W  M  L  F  L  Q  S  E  L  M  I  G  *  T  *  S  E  L  R  R :   S  L  E  V  L  C  G  I  L  S  L  *  M  V  L  P  L  R  R  H  F  P  M  L  V  L  N  S  S  Q  R  S  L  *  T  P  R  Y  F  Y  *  T  *  S  W  S  *  N  Q  K  K  K  M  Q  R  *   : G  S  Q  I  Q  R  N  I  S  Q  L  L  M  Q  S  G  I  S  F  M  T  S  W  I  N  V  *  R  V  V  P  K  L  F  C  L  D  S  L  L  V  I  W  P  H  S :   I  L  Q  T  E  I  Y  S  V  L  V  V  S  L  K  R  I  C  S  G  *  L  L  L  L  V  E  Q  C  R  Q  L  *  T  M  L  L  M  R :   F  L  A  L  V  R  F  L  R  R  S  K  L  E  M  R  D  S  I  Y  L  V  D  V  P  L  A  R  P  P  L  L  S  F  V  V  E  Q  I  S :   S  L  R  K  L  R  E  A  C  M  M  L  L  *  L  L  E  E  L  *  K  T  L  R  L  F  L  E  V  V  Q  *  I :   W  K  *  A  V  S  *  G  T  M  L  E  Q  F  K  G  N  L  S  S  S  *  T  L  M  Q  K  L  L  R :   L  S  P  V  S  Y  V  T  M  L  V  L  M  Q  L  M  C  *  T  S  S  D  K  N  T  L  F  R  L  :  V  R  V  H  L  M  E  L  T  L  I  L  V  A  *  L  I  H  L  P  T  L  F  G  S  Q  Q  S  *  R :   *  M  P  S  M  Q  P  L  K  L  H  A  S  F  *  V  *  M  R  Q  *  R  I  L  S :   L  R  V  H  K  E  M  L  L  Q  V  P  W  V  V  V  E  G  V  D  V  D  V  E  *  D  G  D  R  F  H  K  F  F  C  R  F  C  Y  D  F  Y  V  V  F  A  F  F  P  M  F  A  P  P  F  C  S  S  S  C  L  P  R  S  K  C  S  N  L  D  I  D  S  H  I  A  T  E  K  Q  S  K  Q  S  C  V  K  F  R  Q  H  P  V  N  *  I  I  F  V  A  V  S  F  A  I :   K  A   : K  K  K  E  K  T  W  :  K  R  *  E  K   : V  E  P  *  K  R  S  C  P  </first_frame>
            <second_frame>  K  E  K  P  *  N  R  S  S  L  F  S  S  R  S  K  S  D  Q  I  A  S  N  N  V  C  H  D   : A  T  S  D  H  I  A  *  G  R  D  R  H  V  S  G  E  G  T  V  G  E  Q  H  K  C  M  Y  G  C  G  *  C  G  A  Y  H  P  W  S  *  G  Y  G  Q  V  D  P  R  R  *  R  K  H  H  Y  F  K  *  W  C  H  Y  N  E  A  S  R  Y  N  S  S  C  S  K  N  T  C  *  H  R  Q  V  S  R  L  *   : G  W  *  W  N  H  Y  S  C  S  A  C  R  R  I  F  K  G  S  Q  A  F  C  R  R  G  C  P  P  S  K  S  Y  S  *  L  S  N  R  F  *  Y   : G  N  R  E  G  K  R  I  G  C  *  H  R  G  K  K  F  G  R  K  E  K  S  A  C  K  V  C  C  Y  N  S  V  I  K  A  H  W  R  G  K  G  I  L  C  I  H  G  C  G  C  C  S  C  N  R  N  *  *  *  A  E  H  D  R  N  *  E   : G  P  W  R  Y  Y  A  G  F  F  P  C  K  W  C  C  L  *  E  D  I  F  L  C  W  F  *  T  A  A  K  E  V  C  K  P  Q  D  T  F  T  E  H  R  V  G  A  K  I  R  K  R  K  C  R  D  K  :  A  L  R  S  S  A  I  S  V  N  C  *  C  R  V  E  Y  H  L  *  Q  V  G  *  M  C  K  E  W  C  Q  S  C  F  V  *  T  R  Y  W  *  S  G  H  T   : V  F  C  R  P  R  Y  I  L  C  W  S  C  L  *  R  G  S  A  A  G  S  C  C  C  W  W  N  S  A  D  N  C  E  Q  C  Y  *  *   : G  S  W  L  L  *  D  F  *  G  E  A  S  W  K  *  E  I  Q  Y  I  *  W  M  S  L  W  Q  D  R  H  Y  C  P  S  W  W  S  R  S   : V  H  *  G  S  *  E  K  L  A  *  C  Y  Y  D  C  *  K  S  C  E  K  L  Y  G  C  S  W  R  W  C  N  R   : Y  G  N  K  P  F  L  E  A  P  C  S  N  N  S  R  E  I  S  A  L  H  K  L  L  C  K  S  S  *   : D  Y  P  P  S  A  M  *  Q  C  W  F  *  C  N  *  C  A  E  Q  A  Q  T  K  T  R  S  S  V  W :   *  G  C  T  L  W  S  *  H  *  Y  W  W  H  S  *  F  I  C  Q  L  C  L  G  A  S  S  R  E   : D  K  C  H  Q  C  S  H  *  S  C  M  P  H  S  E  C  R  *  D  S  E  E  S  *   : V  *  E  C  T  R  R  C  C  C  K  C  H  G  W  W  *  R  A  W  T  W  T  W  N  E  T  A  I  D  F  I  S  S  F  A  D  F  A  M  I  F  M  *  C  L  L  F  S  P  C  L  L  L  P  S  V  V  L  V  V  S  L  D  Q  N  V  Q  I  W  T  S  I  L  I  *  Q  P  R  N  N  Q  N  R  A  V  L  S  S  G  N  I  Q  *  T  K  L  F  L  L  L  S  V  L  Q   : *  R  Q  :  K  K  K  K  K  H  G :   K  D  K  K  K  :  L  N  R  R  R  G  L  A  P </second_frame>
            <third_frame>   R  K  N  P  R  I  E  A  H  F  S  P  Q  D  R  S  R  I  K  S  P  P  T  M  S  A  M  M  :  Q  P  Q  I  I  L  L  K  E  G  T  D  T  S  Q  G  K  A  Q  L  V  S  N  I  N  A  C  M  A  V  A  D  V  V  R  T  T  L  G  P  R  G  M  D  K  L  I  H  D  D  K  G  N  T  T  I  S  N  D  G  A  T  I  M  K  L  L  D  I  I  H  P  A  A  K  I  L  V  D  I  A  K  S  Q  D  S  E  :  V  G  D  G  T  T  T  V  V  L  L  A  G  E  F  L  K  E  A  K  P  F  V  E  E  G  V  H  P  Q  N  L  I  R  S  Y  R  T  A  S  N  M  :  A  I  E  K  V  K  E  L  A  V  S  I  E  G  K  S  L  E  E  K  K  S  L  L  A  K  C  A  A  T  T  L  S  S  K  L  I  G  G  E  K  E  F  F  A  S  M  V  V  D  A  V  L  A  I  G  T  D  D  R  L  N  M  I  G  I  K  K  :  V  P  G  G  T  M  R  D  S  F  L  V  N  G  V  A  F  K  K  T  F  S  Y  A  G  F  E  Q  Q  P  K  K  F  V  N  P  K  I  L  L  L  N  I  E  L  E  L  K  S  E  K  E  N  A  E  I  R :   L  S  D  P  A  Q  Y  Q  S  I  V  D  A  E  W  N  I  I  Y  D  K  L  D  K  C  V  K  S  G  A  K  V  V  L  S  R  L  A  I  G  D  L  A  T  Q  :  Y  F  A  D  R  D  I  F  C  A  G  R  V  S  E  E  D  L  Q  R  V  A  A  A  A  G  G  T  V  Q  T  T  V  N  N  V  I  D  E  :  V  L  G  S  C  E  I  F  E  E  K  Q  V  G  N  E  R  F  N  I  F  S  G  C  P  S  G  K  T  A  T  I  V  L  R  G  G  A  D  Q  :  F  I  E  E  A  E  R  S  L  H  D  A  I  M  I  V  R  R  A  V  K  N  S  T  V  V  P  G  G  G  A  I  D  :  M  E  I  S  R  F  L  R  H  H  A  R  T  I  Q  G  K  S  Q  L  F  I  N  S  Y  A  K  A  L  E  :  I  I  P  R  Q  L  C  D  N  A  G  F  D  A  T  D  V  L  N  K  L  R  Q  K  H  A  L  P  S   : G  E  G  A  P  Y  G  V  D  I  N  T  G  G  I  A  D  S  F  A  N  F  V  W  E  P  A  V  V  K  :  I  N  A  I  N  A  A  T  E  A  A  C  L  I  L  S  V  D  E  T  V  K  N  P  K  :  S  E  S  A  Q  G  D  A  A  A  S  A  M  G  G  G  R  G  R  G  R  G  R  G  M  R  R  R  *  I  S  *  V  L  L  Q  I  L  L  *  F  L  C  S  V  C  F  F  P  H  V  C  S  S  L  L  *  F  *  L  S  P  S  I  K  M  F  K  F  G  H  R  F  S  Y  S  N  R  E  T  I  K  T  E  L  C  *  V  Q  A  T  S  S  K  L  N  Y  F  C  C  C  Q  F  C  N  :  K  G  K :   K  K  R  K  N  M   : E  K  I  R  K  S :   *  T  V  E  E  V  L  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115403" stop="115320"/>
                    <exon start="114677" stop="114417"/>
                    <exon start="114201" stop="114076"/>
                    <exon start="113946" stop="113743"/>
                    <exon start="113108" stop="112939"/>
                    <exon start="112810" stop="112675"/>
                    <exon start="111953" stop="111837"/>
                    <exon start="111713" stop="111594"/>
                    <exon start="111513" stop="111415"/>
                    <exon start="111332" stop="111243"/>
                    <exon start="110411" stop="110324"/>
                    <exon start="109842" stop="109754"/>
                    <exon start="109595" stop="109521"/>
                    <exon start="107685" stop="107599"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1743</number_coding_nucleotides>
                  <number_encoded_amino_acids>581</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKNPRIEAHFSPQDRSRIKSPPTMSAMMQPQIILLKEGTDTSQGKAQLVSNINACMAVADVVRTTLGPRGMDKLIHDDKGNTTISNDGATIMKLLDIIHPAAKILVDIAKSQDSEVGDGTTTVVLLAGEFLKEAKPFVEEGVHPQNLIRSYRTASNMAIEKVKELAVSIEGKSLEEKKSLLAKCAATTLSSKLIGGEKEFFASMVVDAVLAIGTDDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFVNPKILLLNIELELKSEKENAEIRLSDPAQYQSIVDAEWNIIYDKLDKCVKSGAKVVLSRLAIGDLATQYFADRDIFCAGRVSEEDLQRVAAAAGGTVQTTVNNVIDEVLGSCEIFEEKQVGNERFNIFSGCPSGKTATIVLRGGADQFIEEAERSLHDAIMIVRRAVKNSTVVPGGGAIDMEISRFLRHHARTIQGKSQLFINSYAKALEIIPRQLCDNAGFDATDVLNKLRQKHALPSGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKSESAQGDAAASAMGGGRGRGRGRGMRRR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107609" stop="107400"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DGDRFHKFFCRFCYDFYVVFAFFPMFAPPFCSSSCLPRSKCSNLDIDSHIATEKQSKQSCVKFRQHPVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="110414" e_stop="110324"/>
            <exon e_start="109842" e_stop="109754"/>
            <exon e_start="109595" e_stop="109521"/>
            <exon e_start="107685" e_stop="107275"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.960" acc_prob="0.991" e_score="0.989"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="110414" e_stop="110324" e_length="91"/>
          </exon>
          <intron i_serial="1" don_prob="0.960" acc_prob="0.991">
            <gDNA_intron_boundary i_start="110323" i_stop="109843" i_length="481"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="109842" e_stop="109754" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="109753" i_stop="109596" i_length="158"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="109595" e_stop="109521" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.990">
            <gDNA_intron_boundary i_start="109520" i_stop="107686" i_length="1835"/>
          </intron>
          <exon e_serial="4" e_score="0.989">
            <gDNA_exon_boundary e_start="107685" e_stop="107275" e_length="411"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110414" stop="110324"/>
              <exon start="109842" stop="109754"/>
              <exon start="109595" stop="109521"/>
              <exon start="107685" stop="107327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110340" stop="110324"/>
              <exon start="109842" stop="109754"/>
              <exon start="109595" stop="109521"/>
              <exon start="107685" stop="107320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109823" stop="109754"/>
              <exon start="109595" stop="109521"/>
              <exon start="107685" stop="107308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429392" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107650" stop="107324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107629" stop="107275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107629" stop="107275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107600" stop="107324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E593586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107597" stop="107292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216064" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGATTATCCCCCGTCAGCTATGTGACAATGCTGGTTTTGATGCAACTGATGTGCTGAACAAGCTCAGACAAAAACACGCTCTTCCGTCTG : GTGAGGGTGCACCTTATGGAGTTGACATTAATACTGGTGGCATAGCTGATTCATTTGCCAACTTTGTTTGGGAGCCAGCAGTCGTGAAG : ATAAATGCCATCAATGCAGCCACTGAAGCTGCATGCCTCATTCTGAGTGTAGATGAGACAGTGAAGAATCCTAAG : TCTGAGAGTGCACAAGGAGATGCTGCTGCAAGTGCCATGGGTGGTGGTAGAGGGCGTGGACGTGGACGTGGAATGAGACGGCGATAGATTTCATAAGTTCTTTTGCAGATTTTGCTATGATTTTTATGTAGTGTTTGCTTTTTTCCCCATGTTTGCTCCTCCCTTCTGTAGTTCTAGTTGTCTCCCTCGATCAAAATGTTCAAATTTGGACATCGATTCTCATATAGCAACCGAGAAACAATCAAAACAGAGCTGTGTTAAGTTCAGGCAACATCCAGTAAACTAAATTATTTTTGTTGCTGTCAGTTTTGCAATGTACGAAGCCTGCCGCTGGATATATAATATTCTGTGTATTAAACTTCATCTTGTGTTGAAAAGTTCACAAATTTACGACATAAAAACTTTTAATTT</gDNA_template>
            <first_frame> Q  I  I  P  R  Q  L  C  D  N  A  G  F  D  A  T  D  V  L  N  K  L  R  Q  K  H  A  L  P  S   : G  E  G  A  P  Y  G  V  D  I  N  T  G  G  I  A  D  S  F  A  N  F  V  W  E  P  A  V  V  K  :  I  N  A  I  N  A  A  T  E  A  A  C  L  I  L  S  V  D  E  T  V  K  N  P  K  :  S  E  S  A  Q  G  D  A  A  A  S  A  M  G  G  G  R  G  R  G  R  G  R  G  M  R  R  R  *  I  S  *  V  L  L  Q  I  L  L  *  F  L  C  S  V  C  F  F  P  H  V  C  S  S  L  L  *  F  *  L  S  P  S  I  K  M  F  K  F  G  H  R  F  S  Y  S  N  R  E  T  I  K  T  E  L  C  *  V  Q  A  T  S  S  K  L  N  Y  F  C  C  C  Q  F  C  N  V  R  S  L  P  L  D  I  *  Y  S  V  Y  *  T  S  S  C  V  E  K  F  T  N  L  R  H  K  N  F  *  F </first_frame>
            <second_frame>  R  L  S  P  V  S  Y  V  T  M  L  V  L  M  Q  L  M  C  *  T  S  S  D  K  N  T  L  F  R  L  :  V  R  V  H  L  M  E  L  T  L  I  L  V  A  *  L  I  H  L  P  T  L  F  G  S  Q  Q  S  *  R :   *  M  P  S  M  Q  P  L  K  L  H  A  S  F  *  V  *  M  R  Q  *  R  I  L  S :   L  R  V  H  K  E  M  L  L  Q  V  P  W  V  V  V  E  G  V  D  V  D  V  E  *  D  G  D  R  F  H  K  F  F  C  R  F  C  Y  D  F  Y  V  V  F  A  F  F  P  M  F  A  P  P  F  C  S  S  S  C  L  P  R  S  K  C  S  N  L  D  I  D  S  H  I  A  T  E  K  Q  S  K  Q  S  C  V  K  F  R  Q  H  P  V  N  *  I  I  F  V  A  V  S  F  A  M  Y  E  A  C  R  W  I  Y  N  I  L  C  I  K  L  H  L  V  L  K  S  S  Q  I  Y  D  I  K  T  F  N   </second_frame>
            <third_frame>   D  Y  P  P  S  A  M  *  Q  C  W  F  *  C  N  *  C  A  E  Q  A  Q  T  K  T  R  S  S  V  W :   *  G  C  T  L  W  S  *  H  *  Y  W  W  H  S  *  F  I  C  Q  L  C  L  G  A  S  S  R  E   : D  K  C  H  Q  C  S  H  *  S  C  M  P  H  S  E  C  R  *  D  S  E  E  S  *   : V  *  E  C  T  R  R  C  C  C  K  C  H  G  W  W  *  R  A  W  T  W  T  W  N  E  T  A  I  D  F  I  S  S  F  A  D  F  A  M  I  F  M  *  C  L  L  F  S  P  C  L  L  L  P  S  V  V  L  V  V  S  L  D  Q  N  V  Q  I  W  T  S  I  L  I  *  Q  P  R  N  N  Q  N  R  A  V  L  S  S  G  N  I  Q  *  T  K  L  F  L  L  L  S  V  L  Q  C  T  K  P  A  A  G  Y  I  I  F  C  V  L  N  F  I  L  C  *  K  V  H  K  F  T  T  *  K  L  L  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110414" stop="110324"/>
                    <exon start="109842" stop="109754"/>
                    <exon start="109595" stop="109521"/>
                    <exon start="107685" stop="107599"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QIIPRQLCDNAGFDATDVLNKLRQKHALPSGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKSESAQGDAAASAMGGGRGRGRGRGMRRR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107609" stop="107400"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DGDRFHKFFCRFCYDFYVVFAFFPMFAPPFCSSSCLPRSKCSNLDIDSHIATEKQSKQSCVKFRQHPVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="115405" e_stop="115320"/>
            <exon e_start="114677" e_stop="114417"/>
            <exon e_start="114201" e_stop="114076"/>
            <exon e_start="113946" e_stop="113883"/>
            <exon e_start="111905" e_stop="111837"/>
            <exon e_start="111713" e_stop="111594"/>
            <exon e_start="111513" e_stop="111466"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.868" acc_prob="0.990" e_score="0.975"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.977"/>
          <exon-intron don_prob="0.946" acc_prob="0.990" e_score="0.992"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.991" e_score="0.957"/>
          <exon-intron don_prob="0.997" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="115405" e_stop="115320" e_length="86"/>
          </exon>
          <intron i_serial="1" don_prob="0.868" acc_prob="0.990">
            <gDNA_intron_boundary i_start="115319" i_stop="114678" i_length="642"/>
          </intron>
          <exon e_serial="2" e_score="0.977">
            <gDNA_exon_boundary e_start="114677" e_stop="114417" e_length="261"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="114416" i_stop="114202" i_length="215"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="114201" e_stop="114076" e_length="126"/>
          </exon>
          <intron i_serial="3" don_prob="0.946" acc_prob="0.990">
            <gDNA_intron_boundary i_start="114075" i_stop="113947" i_length="129"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="113946" e_stop="113883" e_length="64"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="113882" i_stop="111906" i_length="1977"/>
          </intron>
          <exon e_serial="5" e_score="0.957">
            <gDNA_exon_boundary e_start="111905" e_stop="111837" e_length="69"/>
          </exon>
          <intron i_serial="5" don_prob="0.957" acc_prob="0.991">
            <gDNA_intron_boundary i_start="111836" i_stop="111714" i_length="123"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="111713" e_stop="111594" e_length="120"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.986">
            <gDNA_intron_boundary i_start="111593" i_stop="111514" i_length="80"/>
          </intron>
          <exon e_serial="7" e_score="0.958">
            <gDNA_exon_boundary e_start="111513" e_stop="111466" e_length="48"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115405" stop="115320"/>
              <exon start="114677" stop="114417"/>
              <exon start="114201" stop="114076"/>
              <exon start="113946" stop="113894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115400" stop="115320"/>
              <exon start="114677" stop="114417"/>
              <exon start="114201" stop="114173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115388" stop="115320"/>
              <exon start="114677" stop="114542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115387" stop="115320"/>
              <exon start="114677" stop="114417"/>
              <exon start="114201" stop="114146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114646" stop="114417"/>
              <exon start="114201" stop="114076"/>
              <exon start="113946" stop="113883"/>
              <exon start="111905" stop="111837"/>
              <exon start="111713" stop="111594"/>
              <exon start="111513" stop="111476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114644" stop="114417"/>
              <exon start="114201" stop="114076"/>
              <exon start="113946" stop="113883"/>
              <exon start="111905" stop="111837"/>
              <exon start="111713" stop="111594"/>
              <exon start="111513" stop="111466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425157" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGGAAAAACCCTAGAATAGAAGCTCACTTTTCTCCTCAAGATCGAAGTCGGATCAAATCGCCTCCAACAATGTCTGCCATGATG : CAACCTCAGATCATATTGCTTAAGGAAGGGACAGACACGTCTCAGGGGAAGGCACAGTTGGTGAGCAACATAAATGCATGTATGGCTGTGGCTGATGTGGTGCGTACCACCCTTGGTCCTAGGGGTATGGACAAGTTGATCCACGACGATAAAGGAAACACCACTATTTCAAATGATGGTGCCACTATAATGAAGCTTCTAGATATAATTCATCCTGCAGCAAAAATACTTGTTGACATCGCCAAGTCTCAAGACTCTGAG : GTTGGTGATGGAACCACTACAGTTGTTCTGCTTGCAGGAGAATTTTTAAAGGAAGCCAAGCCTTTTGTCGAAGAGGGTGTCCACCCTCAAAATCTTATTCGTAGTTATCGAACCGCTTCTAATATG : GCAATCGAGAAGGTAAAAGAATTGGCTGTTAGCATAGAGGGAAAAAGTTTGGAAGAAAAGAAAA : GATCTGCAGCGGGTAGCTGCTGCTGCTGGTGGAACAGTGCAGACAACTGTGAACAATGTTATTGATGAG : GTTCTTGGCTCTTGTGAGATTTTTGAGGAGAAGCAAGTTGGAAATGAGAGATTCAATATATTTAGTGGATGTCCCTCTGGCAAGACCGCCACTATTGTCCTTCGTGGTGGAGCAGATCAG : TTCATTGAGGAAGCTGAGAGAAGCTTGCATGATGCTATTATGATTGTT</gDNA_template>
            <first_frame> K  G  K  T  L  E  *  K  L  T  F  L  L  K  I  E  V  G  S  N  R  L  Q  Q  C  L  P  *  C :   N  L  R  S  Y  C  L  R  K  G  Q  T  R  L  R  G  R  H  S  W  *  A  T  *  M  H  V  W  L  W  L  M  W  C  V  P  P  L  V  L  G  V  W  T  S  *  S  T  T  I  K  E  T  P  L  F  Q  M  M  V  P  L  *  *  S  F  *  I  *  F  I  L  Q  Q  K  Y  L  L  T  S  P  S  L  K  T  L  R :   L  V  M  E  P  L  Q  L  F  C  L  Q  E  N  F  *  R  K  P  S  L  L  S  K  R  V  S  T  L  K  I  L  F  V  V  I  E  P  L  L  I  W :   Q  S  R  R  *  K  N  W  L  L  A  *  R  E  K  V  W  K  K  R  K  :  D  L  Q  R  V  A  A  A  A  G  G  T  V  Q  T  T  V  N  N  V  I  D  E  :  V  L  G  S  C  E  I  F  E  E  K  Q  V  G  N  E  R  F  N  I  F  S  G  C  P  S  G  K  T  A  T  I  V  L  R  G  G  A  D  Q  :  F  I  E  E  A  E  R  S  L  H  D  A  I  M  I  V </first_frame>
            <second_frame>  K  E  K  P  *  N  R  S  S  L  F  S  S  R  S  K  S  D  Q  I  A  S  N  N  V  C  H  D   : A  T  S  D  H  I  A  *  G  R  D  R  H  V  S  G  E  G  T  V  G  E  Q  H  K  C  M  Y  G  C  G  *  C  G  A  Y  H  P  W  S  *  G  Y  G  Q  V  D  P  R  R  *  R  K  H  H  Y  F  K  *  W  C  H  Y  N  E  A  S  R  Y  N  S  S  C  S  K  N  T  C  *  H  R  Q  V  S  R  L  *   : G  W  *  W  N  H  Y  S  C  S  A  C  R  R  I  F  K  G  S  Q  A  F  C  R  R  G  C  P  P  S  K  S  Y  S  *  L  S  N  R  F  *  Y   : G  N  R  E  G  K  R  I  G  C  *  H  R  G  K  K  F  G  R  K  E  K :   I  C  S  G  *  L  L  L  L  V  E  Q  C  R  Q  L  *  T  M  L  L  M  R :   F  L  A  L  V  R  F  L  R  R  S  K  L  E  M  R  D  S  I  Y  L  V  D  V  P  L  A  R  P  P  L  L  S  F  V  V  E  Q  I  S :   S  L  R  K  L  R  E  A  C  M  M  L  L  *  L   </second_frame>
            <third_frame>   R  K  N  P  R  I  E  A  H  F  S  P  Q  D  R  S  R  I  K  S  P  P  T  M  S  A  M  M  :  Q  P  Q  I  I  L  L  K  E  G  T  D  T  S  Q  G  K  A  Q  L  V  S  N  I  N  A  C  M  A  V  A  D  V  V  R  T  T  L  G  P  R  G  M  D  K  L  I  H  D  D  K  G  N  T  T  I  S  N  D  G  A  T  I  M  K  L  L  D  I  I  H  P  A  A  K  I  L  V  D  I  A  K  S  Q  D  S  E  :  V  G  D  G  T  T  T  V  V  L  L  A  G  E  F  L  K  E  A  K  P  F  V  E  E  G  V  H  P  Q  N  L  I  R  S  Y  R  T  A  S  N  M  :  A  I  E  K  V  K  E  L  A  V  S  I  E  G  K  S  L  E  E  K  K   : R  S  A  A  G  S  C  C  C  W  W  N  S  A  D  N  C  E  Q  C  Y  *  *   : G  S  W  L  L  *  D  F  *  G  E  A  S  W  K  *  E  I  Q  Y  I  *  W  M  S  L  W  Q  D  R  H  Y  C  P  S  W  W  S  R  S   : V  H  *  G  S  *  E  K  L  A  *  C  Y  Y  D  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0118M03.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115403" stop="115320"/>
                    <exon start="114677" stop="114417"/>
                    <exon start="114201" stop="114076"/>
                    <exon start="113946" stop="113883"/>
                    <exon start="111905" stop="111841"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKNPRIEAHFSPQDRSRIKSPPTMSAMMQPQIILLKEGTDTSQGKAQLVSNINACMAVADVVRTTLGPRGMDKLIHDDKGNTTISNDGATIMKLLDIIHPAAKILVDIAKSQDSEVGDGTTTVVLLAGEFLKEAKPFVEEGVHPQNLIRSYRTASNMAIEKVKELAVSIEGKSLEEKKRSAAGSCCCWWNSADNCEQCY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="105366" PGL_stop="107656"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105366" e_stop="105385"/>
            <exon e_start="107328" e_stop="107656"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.827" acc_prob="0.000" e_score="0.800"/>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.800">
            <gDNA_exon_boundary e_start="105366" e_stop="105385" e_length="20"/>
          </exon>
          <intron i_serial="1" don_prob="0.827" acc_prob="0.000">
            <gDNA_intron_boundary i_start="105386" i_stop="107327" i_length="1942"/>
          </intron>
          <exon e_serial="2" e_score="0.912">
            <gDNA_exon_boundary e_start="107328" e_stop="107656" e_length="329"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105366" stop="105385"/>
              <exon start="107328" stop="107656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457243" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTTTTCTTTTTTTTGCAG : TTTAATACACAGAATATTATATATCCAGCGGCAGGCTTCGTACATTGCAAAACTGACAGCAACAAAAATAATTTAGTTTACTGGATGTTGCCTGAACTTAACACAGCTCTGTTTTGATTGTTTCTCGGTTGCTATATGAGAATCGATGTCCAAATTTGAACATTTTGATCGAGGGAGACAACTAGAACTACAGAAGGGAGGAGCAAACATGGGGAAAAAAGCAAACACTACATAAAAATCATAGCAAAATCTGCAAAAGAACTTATGAAATCTATCGCCGTCTCATTCCACGTCCACGTCCACGCCCTCTACCACCACCCATGGCACTT</gDNA_template>
            <first_frame> V  F  S  F  F  C  S :   L  I  H  R  I  L  Y  I  Q  R  Q  A  S  Y  I  A  K  L  T  A  T  K  I  I  *  F  T  G  C  C  L  N  L  T  Q  L  C  F  D  C  F  S  V  A  I  *  E  S  M  S  K  F  E  H  F  D  R  G  R  Q  L  E  L  Q  K  G  G  A  N  M  G  K  K  A  N  T  T  *  K  S  *  Q  N  L  Q  K  N  L  *  N  L  S  P  S  H  S  T  S  T  S  T  P  S  T  T  T  H  G  T  </first_frame>
            <second_frame>  F  F  L  F  F  A   : V  *  Y  T  E  Y  Y  I  S  S  G  R  L  R  T  L  Q  N  *  Q  Q  Q  K  *  F  S  L  L  D  V  A  *  T  *  H  S  S  V  L  I  V  S  R  L  L  Y  E  N  R  C  P  N  L  N  I  L  I  E  G  D  N  *  N  Y  R  R  E  E  Q  T  W  G  K  K  Q  T  L  H  K  N  H  S  K  I  C  K  R  T  Y  E  I  Y  R  R  L  I  P  R  P  R  P  R  P  L  P  P  P  M  A  L </second_frame>
            <third_frame>   F  F  F  F  L  Q  :  F  N  T  Q  N  I  I  Y  P  A  A  G  F  V  H  C  K  T  D  S  N  K  N  N  L  V  Y  W  M  L  P  E  L  N  T  A  L  F  *  L  F  L  G  C  Y  M  R  I  D  V  Q  I  *  T  F  *  S  R  E  T  T  R  T  T  E  G  R  S  K  H  G  E  K  S  K  H  Y  I  K  I  I  A  K  S  A  K  E  L  M  K  S  I  A  V  S  F  H  V  H  V  H  A  L  Y  H  H  P  W  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLm0118M03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 350 chains have been computed
$ 
$ memory statistics:
$ 2727720 bytes spliced alignments in total
$ 181 spliced alignments have been stored
$ 15070 bytes was the average size of a spliced alignment
$ 40664 bytes predicted gene locations in total
$ 22 predicted gene locations have been stored
$ 1848 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 407 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 23:43:02
-->
