<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 23:36:30"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06SLm0123O13-e6BQX/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06SLm0123O13-e6BQX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0123O13-e6BQX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7622-2" ref_strand="+" ref_description="SGN-M7622-2 C2_At3g05070-2 [cosii_markers]">
      <seq>ttactctgcagaagcagagagtgttttccatagtgattttgagttcgaatttgggaaatagtttaaaaatatattgtgaatgtcgacggaggaggaaaacgccatagaggcggcggcagcggcgcgaagggagaggctgagagccctcagagaagctcaagaacttcttcaaacccctgacgatgatggtaacaagactaacgaagaggaagacgaaaatgatgtccaaatgaagttccgcaattacctgccacatgacaagcagcttcaagaaggcaaagtcactccgccagtactcccaaagttcgaagatcctattgcaactctacctcctcctgaagagaagaaagaggatccatttctaaatattgtccccaagaagccaaattgggacctgcgacgggatgtgcaaaagaaacttgacaagcttgagaaacgtaccatgaaggcactcactcaacttatggaggaagaagaaaaaaagaggaagatagctgaagaagaggatactgaaaatggtggagattagatagatgtgcagcagtaattcaaaacattgtggttttggataagacacaagtgctgtatgagtattatgtttattacatctagtctttttgactgtgagacgttgtagcgagtgttgtgaagaatatgatacaggttaaatgtccaaatacattcgtaaactattgttaaatacgagaatcatctgatcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0123O13-e6BQX/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C06SLm0123O13.1" temp_strand="-" temp_description="C06SLm0123O13.1  AC216665.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0123O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="45078" stop="40472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44781" g_stop="44563" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44562" i_stop="43912" i_length="651">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43911" g_stop="43779" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="352" r_length="133" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43778" i_stop="43680" i_length="99">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43679" g_stop="43565" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="467" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43564" i_stop="41023" i_length="2542">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41022" g_stop="40772" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="723" r_length="256" r_score="0.876"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0123O13.1" gen_strand="-" ref_id="SGN-M7622-2" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0123O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7622-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44781" e_stop="44563"/>
          <exon e_start="43911" e_stop="43779"/>
          <exon e_start="43679" e_stop="43565"/>
          <exon e_start="41022" e_stop="40772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTCTGCAGAAGCTGCGAGCATTTTCCATAGTGATTTTGAGTTCGAATTGGAGAAATAGTTTTAAAATATATCGTCAATGTCGACGGAGGAGGAAAACGCCATTGAGGCGGCGGCAGCGGCGCGAAGGGAGAGGCTGAGAGCCCTCAGAGAAGCTCAAGAACTTCTTCAAACCCCTGACGATGATGGTAACAAGACTAAAGAAGAGGAAGACGAAAAGTAAGCACTACCCGTTTGTTTATCCCTTTATTCTTAGTTAATTTGATGTTAATTGAAAAGTTGATGTTACCGTCGATTCTGTGTTCTGCAAAGATACCTTGCATTCTAGCTTTTTAGTCTGTAAGAGACAAATCCTCTCGTATTGGACCCGAATAGGGGTTTGAAGCCCTAGCTCACTTGTTGAGCTCTAGGTCTCCGCAGTTGTGGTGGAAGCCTCCCCACCCCTCCGCTGAAGTAATTTTAGAAACAATAGACCTGAATAGAGCAGAATGGAGAGGTTTCAAGTCCCTCCTTTTGCTTCTGGCTTTGTATTTAGTGATAACAATTCCAGTGCATAAGCTACTTTATAGATAGGGTGAACAGCAAGGAGCCCACTTACAGGAAACTAAATCTGTCTGACTAATATGTGGAAAGGGCAAGCGAAAACTGACTTCTGAACCAAGGGTATATCGGAAACGGACTTCTGCTCCACAGAGGTAGGGGTAAGGTCTATGTACAGTCTTACACCCATCCTCCACAGATCCCATTTGTGAGATCTCATTGAGTATATTGTTGTAGTGTACTTATGAATAGAGCAGGCGAATTGAGTTTACCAAAAATTGACTCAGGACTAGTTTTGGCATAATATTGATTGGTTGATATATATTACAGTGATGTCCAAATGAAGTTCCGCAATTACCTGCCACATGACAAGCAGCTTCAAGAAGGCAAAGTCACTCCGCCAGTACTTCCAAAGTTCGAAGATCCTATTGCGACTCTACCTCCTCCCGAAGAGAAGAAAGAGGTGCTTCAGTGATTGCACTATTTATTTCCTTCTGTTTTCTTCCTCATTCATATTAGTTGTGTTTACTGTCATGACTTTTCTTTGGTTGAATTTTATCAGGATCCATTTCTAAATATTGTCCCCAAGAAGCCAAATTGGGACCTGCGACGGGATGTGCAAAAGAAACTTGACAAGCTTGAGAAACGTACCATGAAGGCACTCACTCAACTTATGGGTACGTCTTTTCTGCTCATTTTGTGTTATTTGACTCTCAAGTATGTAATGGCCATGTTCCATAGCATTTAATTTTTTTTTGGTTAAGTCTTGTCCCATAGAATTTGTTAAAAGTAATTTAAATTGAAAAAGGAAAATCATGTGATTACATTTTCATCTCTTGAAGAAGTCTTAGCTGAGATTGTTCCTTGAGTTTGTTCCTTGTACTTCTGTTGTTTGTAAGAGTAAGAACATCTGACTGGACATGACACAAATAACTATTTCAATATATATCTTCCTTCATAAAAAACTCTCATGATGGCCCATTTGTACTCCCAGTAGGTTTACTTGCAGCGGTTGGGACTTTGCTTTGGCAAGCTATTAAATGCACCACTTGGATGCTCCTTTGTGAATTGAGAGAACTCCAGTAGCACTGATCTGTGAAGTTGTTCTGACAGTAGACTCTTAATAAACATTACATACAGAAATAAATATGGAATAGGAGTGACATGCTCTTATAGCTATACGTATGTCATGACATATTTACGTGCACAAGTTTTAAGGATACCTGTGCTATGTTATGTATATTCAACTTATGTGTCAAAAGTCTATTTTTTCTTAAACTCCATTCTCAATTAAACACTTGAGGAGTATGTCTTTTCAATTTTTATTTTTTTTTAGAAATTTGGTGTCTTTTCAATTTTTATTTTTTTTTAGAAATTTGGTATAGCTATAAATTTATCCGGAAATCTAACAATGGTTCAAGTAAGTTCGGTTCAATAGGCTTGGCCAGTTTCTAAAGTTTTTTTAACGTTCCTAGGTAGTGCTGCATATGGTTACTCCGTATTTTTTAGTCTTTTGGCTCCTTCAATGTTGGTCATTATGGTTCCCTCTATATTGATGACACTTTCTGTGTTGATCCACTTTTGATTCACCTCCGTTGTGCTCGGCTATTTTCAATCAGTGTCTATAATGCAGCCTTTTGGTGCTCTGAATCTTGAAAATGGGCTACGCCTTTGGTCCCACATATTTTTCTAGGGTTATAGCTCATTAGGTAACTGTGGATCATTTAGTAAGATCTTCTTCTAATCAAATTGGGTTTCCTTGGAGCCTTTCTCTTCTAAGCCTGGTTGTGAGTTGTGACCCCCCTAATTGTTTCCAAGTTATATAGCTTATTTTTTTATGAATAAAAGTAATTTATTACTAATATCTTAGTACCAAGGTGGTACTAAGCGAGTACAAAAAGAAAGCTGGATAGAATCCTTAGTAGCCGCAAGGATTCCCAGAAAATCAGCTTCAGTGCAAGAAAATGTAACTATTAACACAAACAATAATCTTTTAAACAAAAGAATAGAGAAAGCTATAGTTAAGTTGTACTCATCAAATCATGTCAATCAAGCTAGAAAAATATTTTAAGGAATGTTGATCTATATTTTAAAGTATTTTTTTGCTAGTCCTAATCTCTGATGTTTAGTCATAACGATTTCTTAACCATTAATGTATCACTTTGTTTTATATTACTACATAGTTATGAGCTCTTAATGACATAGCCCATCAGTGAAGGGCCAAAGAAATGCATTCTTTGCTCAACCTAGACTTAGTGAGATTTATGGCGTAAACATGCTTTAAGCGGGCCTTTCAGCAATATTGTCTGCAAGTGATCCCGATGATAGCAAAAAGATAGCAAAAAGAATAATTGTGGCATTAATTTTGCACTCCACGTTCTGCCAATACATCTTATTCTTTAGCACCTGTGGAGGGTTGAATACCTATCACTACGTTTTTAGGCAAGTCAGCTTTCTACTTAAAGTCTAGCAAACATTTGGCCTAGATTGAAGTGCTGTAGTTGTATCAGACAAGAGTGCATGTCCAGTTGGAGCCACTATTGACTTTAGAGATGCCATATGAAACCAATACAGAATTAACATTGTCTAATCCAAATAATTCTGGAATACTCTCCCTTGCTTTACTTAATTCCTTTGTATATTAAAAGTTAAAGGGGAATCTTAGTATTCTAGTTGAGTGGGTCGTAGGGGTCGATCCCTACTTTGTAATCCCATCCCAGATTTCCCCATTCCCCTGTGCAATTTTCTTAAAAACAAAAGTGTGATCAAGAAAATGCATTTGGCAGCCCCCAAGGCCTAGCTCGAGTGGCAAAAGTGGAGGATTTGTGGCTTAGGTAGCAGGTTCAAGCCCCACAAAATGCAAAGTGAAGTCCGGTATTTAAGTGGAGAAGGGTAGAGCGGTGGGTTCATTATCCACCGAGTTTAGAAGGCTGTGATTGATCCAAAGGACGGGTGATAGACGGATTTCTCGGTTATAAAAAAAATGCATCTTTGGCAGATTATGGAATAGTTCTCTTGAGAATCCAACCTGGAATGCTTTTAATCTTATCTTGATCTTTTACCTAGGTTTGAAGGTCTATTTATTCTTTTTCTTTTTTAAATGAATAAGATTGAAGCATATTATTTTATTGATTTTGAGGCAATTGTTTCATGTGTTAGTTTTGTCCCAGCTACCCAACTTCGAATTTTTCTTGACTTGTCTACATTGATATTTTGTAGAGGAAGAAGAAAAGAAGAGGAAAATAGCTGAAGAAGAGGATACTGAAAATGGTGGAGATTAGATAGATCTTCACCAATAATACAATACATTGTGGTTTT-G----G--ACAAGTGCTGTATGAGTATTATATTTATTACATCTAGTCTTTTTGACTGTGAGACGTTGTAGCGAGTGTTGTTAAAAATATGAATACAGGTTAAATGTCCAGAATATATTCGTAAACTTTTGCCAAATACGAGAATCATCTGATCTTTTT</genome_strand>
        <mrna_strand>TTACTCTGCAGAAGCAGAGAGTGTTTTCCATAGTGATTTTGAGTTCGAATTTGGGAAATAGTTTAAAAATATATTGTGAATGTCGACGGAGGAGGAAAACGCCATAGAGGCGGCGGCAGCGGCGCGAAGGGAGAGGCTGAGAGCCCTCAGAGAAGCTCAAGAACTTCTTCAAACCCCTGACGATGATGGTAACAAGACTAACGAAGAGGAAGACGAAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGTCCAAATGAAGTTCCGCAATTACCTGCCACATGACAAGCAGCTTCAAGAAGGCAAAGTCACTCCGCCAGTACTCCCAAAGTTCGAAGATCCTATTGCAACTCTACCTCCTCCTGAAGAGAAGAAAGAG...................................................................................................GATCCATTTCTAAATATTGTCCCCAAGAAGCCAAATTGGGACCTGCGACGGGATGTGCAAAAGAAACTTGACAAGCTTGAGAAACGTACCATGAAGGCACTCACTCAACTTATGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAAGAAGAAAAAAAGAGGAAGATAGCTGAAGAAGAGGATACTGAAAATGGTGGAGATTAGATAGATGTGCAGCAGTAATTCAAAACATTGTGGTTTTGGATAAGACACAAGTGCTGTATGAGTATTATGTTTATTACATCTAGTCTTTTTGACTGTGAGACGTTGTAGCGAGTGTTGTGAAGAATATG-ATACAGGTTAAATGTCCA-AATACATTCGTAAACTATTGTTAAATACGAGAATCATCTGATCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>1</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="44781" PGL_stop="40772"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44781" e_stop="44563"/>
            <exon e_start="43911" e_stop="43779"/>
            <exon e_start="43679" e_stop="43565"/>
            <exon e_start="41022" e_stop="40772"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="0.936"/>
          <exon-intron don_prob="0.988" acc_prob="0.999" e_score="0.977"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.876"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.936">
            <gDNA_exon_boundary e_start="44781" e_stop="44563" e_length="219"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="44562" i_stop="43912" i_length="651"/>
          </intron>
          <exon e_serial="2" e_score="0.977">
            <gDNA_exon_boundary e_start="43911" e_stop="43779" e_length="133"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43778" i_stop="43680" i_length="99"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43679" e_stop="43565" e_length="115"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="43564" i_stop="41023" i_length="2542"/>
          </intron>
          <exon e_serial="4" e_score="0.876">
            <gDNA_exon_boundary e_start="41022" e_stop="40772" e_length="251"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44781" stop="44563"/>
              <exon start="43911" stop="43779"/>
              <exon start="43679" stop="43565"/>
              <exon start="41022" stop="40772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7622-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTCTCTGCAGAAGCTGCGAGCATTTTCCATAGTGATTTTGAGTTCGAATTGGAGAAATAGTTTTAAAATATATCGTCAATGTCGACGGAGGAGGAAAACGCCATTGAGGCGGCGGCAGCGGCGCGAAGGGAGAGGCTGAGAGCCCTCAGAGAAGCTCAAGAACTTCTTCAAACCCCTGACGATGATGGTAACAAGACTAAAGAAGAGGAAGACGAAAA : TGATGTCCAAATGAAGTTCCGCAATTACCTGCCACATGACAAGCAGCTTCAAGAAGGCAAAGTCACTCCGCCAGTACTTCCAAAGTTCGAAGATCCTATTGCGACTCTACCTCCTCCCGAAGAGAAGAAAGAG : GATCCATTTCTAAATATTGTCCCCAAGAAGCCAAATTGGGACCTGCGACGGGATGTGCAAAAGAAACTTGACAAGCTTGAGAAACGTACCATGAAGGCACTCACTCAACTTATGG : AGGAAGAAGAAAAGAAGAGGAAAATAGCTGAAGAAGAGGATACTGAAAATGGTGGAGATTAGATAGATCTTCACCAATAATACAATACATTGTGGTTTTGGACAAGTGCTGTATGAGTATTATATTTATTACATCTAGTCTTTTTGACTGTGAGACGTTGTAGCGAGTGTTGTTAAAAATATGAATACAGGTTAAATGTCCAGAATATATTCGTAAACTTTTGCCAAATACGAGAATCATCTGATCTTTTT</gDNA_template>
            <first_frame> T  L  C  R  S  C  E  H  F  P  *  *  F  *  V  R  I  G  E  I  V  L  K  Y  I  V  N  V  D  G  G  G  K  R  H  *  G  G  G  S  G  A  K  G  E  A  E  S  P  Q  R  S  S  R  T  S  S  N  P  *  R  *  W  *  Q  D  *  R  R  G  R  R  K  :  *  C  P  N  E  V  P  Q  L  P  A  T  *  Q  A  A  S  R  R  Q  S  H  S  A  S  T  S  K  V  R  R  S  Y  C  D  S  T  S  S  R  R  E  E  R   : G  S  I  S  K  Y  C  P  Q  E  A  K  L  G  P  A  T  G  C  A  K  E  T  *  Q  A  *  E  T  Y  H  E  G  T  H  S  T  Y  G :   G  R  R  K  E  E  E  N  S  *  R  R  G  Y  *  K  W  W  R  L  D  R  S  S  P  I  I  Q  Y  I  V  V  L  D  K  C  C  M  S  I  I  F  I  T  S  S  L  F  D  C  E  T  L  *  R  V  L  L  K  I  *  I  Q  V  K  C  P  E  Y  I  R  K  L  L  P  N  T  R  I  I  *  S  F  </first_frame>
            <second_frame>  L  S  A  E  A  A  S  I  F  H  S  D  F  E  F  E  L  E  K  *  F  *  N  I  S  S  M  S  T  E  E  E  N  A  I  E  A  A  A  A  A  R  R  E  R  L  R  A  L  R  E  A  Q  E  L  L  Q  T  P  D  D  D  G  N  K  T  K  E  E  E  D  E  N :   D  V  Q  M  K  F  R  N  Y  L  P  H  D  K  Q  L  Q  E  G  K  V  T  P  P  V  L  P  K  F  E  D  P  I  A  T  L  P  P  P  E  E  K  K  E  :  D  P  F  L  N  I  V  P  K  K  P  N  W  D  L  R  R  D  V  Q  K  K  L  D  K  L  E  K  R  T  M  K  A  L  T  Q  L  M   : E  E  E  E  K  K  R  K  I  A  E  E  E  D  T  E  N  G  G  D  *  I  D  L  H  Q  *  Y  N  T  L  W  F  W  T  S  A  V  *  V  L  Y  L  L  H  L  V  F  L  T  V  R  R  C  S  E  C  C  *  K  Y  E  Y  R  L  N  V  Q  N  I  F  V  N  F  C  Q  I  R  E  S  S  D  L  F </second_frame>
            <third_frame>   S  L  Q  K  L  R  A  F  S  I  V  I  L  S  S  N  W  R  N  S  F  K  I  Y  R  Q  C  R  R  R  R  K  T  P  L  R  R  R  Q  R  R  E  G  R  G  *  E  P  S  E  K  L  K  N  F  F  K  P  L  T  M  M  V  T  R  L  K  K  R  K  T  K   : M  M  S  K  *  S  S  A  I  T  C  H  M  T  S  S  F  K  K  A  K  S  L  R  Q  Y  F  Q  S  S  K  I  L  L  R  L  Y  L  L  P  K  R  R  K  R :   I  H  F  *  I  L  S  P  R  S  Q  I  G  T  C  D  G  M  C  K  R  N  L  T  S  L  R  N  V  P  *  R  H  S  L  N  L  W  :  R  K  K  K  R  R  G  K  *  L  K  K  R  I  L  K  M  V  E  I  R  *  I  F  T  N  N  T  I  H  C  G  F  G  Q  V  L  Y  E  Y  Y  I  Y  Y  I  *  S  F  *  L  *  D  V  V  A  S  V  V  K  N  M  N  T  G  *  M  S  R  I  Y  S  *  T  F  A  K  Y  E  N  H  L  I  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0123O13.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44714" stop="44563"/>
                    <exon start="43911" stop="43779"/>
                    <exon start="43679" stop="43565"/>
                    <exon start="41022" stop="40961"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NISSMSTEEENAIEAAAAARRERLRALREAQELLQTPDDDGNKTKEEEDENDVQMKFRNYLPHDKQLQEGKVTPPVLPKFEDPIATLPPPEEKKEDPFLNIVPKKPNWDLRRDVQKKLDKLEKRTMKALTQLMEEEEKKRKIAEEEDTENGGD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 48 chains have been computed
$ 
$ memory statistics:
$ 2536 bytes spliced alignments in total
$ 1 spliced alignments have been stored
$ 2536 bytes was the average size of a spliced alignment
$ 5624 bytes predicted gene locations in total
$ 1 predicted gene locations have been stored
$ 5624 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 50 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 23:36:35
-->
