<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 20:58:16"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06SLm0134P07-L6QvM/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06SLm0134P07-L6QvM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0134P07-L6QvM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335079" ref_strand="+" ref_description="SGN-U335079        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>actgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagtttcatgaacgctatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0134P07-L6QvM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0134P07.1" temp_strand="-" temp_description="C06SLm0134P07.1  AC232641.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0134P07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4395" stop="3319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4095" g_stop="3759" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0134P07.1" gen_strand="-" ref_id="SGN-U335079" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0134P07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4095" e_stop="3759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTTAACATGTAGCAACAGCAAGTACTATATCATTAACAATTACCGTCAAGTGCATACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATTATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTACGTGTCAGTTTGTGACACTCGATCC</genome_strand>
        <mrna_strand>ACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATATCAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTCATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGATCCCCTAAATCTACATGACAGTTTCATGAACGCTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0134P07-L6QvM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324057" ref_strand="+" ref_description="SGN-U324057        Tomato 200607 #1 [4 ESTs aligned]">
      <seq>gcagagatattgtcaatgacacatcattagcttcatgttgtaactttcttcctttattgcttttttactttgcttgctgaaaatctcttctatgtttttaccattcatcccaggtaaggctccttcaatttttttctttgatttctctaatgttttatttttccctaaactttgatagttgttttttccttcttctagctgtaatcgttattctctatttattccctcttcttcgccactcctccggcaacgaaaaccagctgctccggctacaactctggcgaagaatcccacaacggtcaacgctcgccgaagtccgttctacggtgtgcttcaacttcatttgatgaatctcagaataacgaggaagcttaagctgagtcattattgattttaccatccgatatcagggacaaaaatgacatttccatgtcggagaacttctgcgatttaccacagttcgagagtttcttcccaaatgatttgtttcagttcgagaacctagcccgtaaaggacttctttcaggatttcgaagatgtattcgagtctaacccgcttgtggctctttgatttcatcggcagattaatcggcgataagtataaatggtttaatattcgtaattttaaaatttaattttgtgtttagtttaccagttttgtttaaatttgttgattaatgtgagtgattagtgagtaattagtaattagtagtattaatatgtaacagctccgtcacattaacggtaatgctgatggatgagattttgcggtacagtgttgttttggtgttttgtgcttcgttaataacaataaacgactttagcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0134P07-L6QvM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0134P07.1" temp_strand="-" temp_description="C06SLm0134P07.1  AC232641.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0134P07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5892" stop="4469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5592" g_stop="4763" g_length="830"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="840" r_length="840" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0134P07.1" gen_strand="-" ref_id="SGN-U324057" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0134P07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U324057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5592" e_stop="4763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAGATATTCTCAGTGACACATCATTAGCTTCATCTTTCAACTTTCTTCCTTTATTGC-TTTTTACTTTGGTTGCTGAAAATCTCTTCTATGTTTTTCCCATTCATCCCAGGTAAGGCTCCTTCAAATTTTTTCTTTGATTTCTCTAATGTTTTA-TTTTCCCTAAACTTTGATGGTTG-TTTTTCCTTCTTCTAGCTGTAATCGTTATTCTCTATTTGTTCCCTCTTCTTCGCCACTCCTCCGGCGACGAAAACCAGCTGCTCCGGCTACAACTCTGGCGAAGAATCCCAAAACGGTCAACGCTCGCCGAAGTCCGTTCTACGGTGTGCTTCAACTTCATTTGATGAATCTCAGAATAACGAGGAAGCTTAAGCTAAGTCATTATCGATTTTACCCTCCGATATCAGGGACAATAATGACATTTCCATGTCGAAGAACTTCTGCGATTTACCACCGTTCAAGAGTTTCTTCCCAAATAATTTGTTTCAGTTCGAGAACCCGGCCCGTAAAGGACTTCTTTCAGGATTTCGGAGATGTATTCGGGTCTAACCCGCTTTTGGCTCTTTGATTTCATCGGCAGATTAATCGGCGATAAGTATAAATGGTTTAATATTCGTAATTTTAAAATTTAATTTTGTGTTTAGTTTACCAGTTTTGTTTAAATTTGTTGATTAATGTGAGTGATTAGT--G-----AGTAATTAGTAGTATTAATATGTAACAGCTCCGTCACATTAACGGTGATGCTGATGGATGAGATTTTGCGGTACAGTGTTGTTTTGGTGTTTTGTGCTTCGTTAATAACAATAAACGACTTTAGCAATTATTAATTATTC</genome_strand>
        <mrna_strand>GCAGAGATATTGTCAATGACACATCATTAGCTTCATGTTGTAACTTTCTTCCTTTATTGCTTTTTTACTTTGCTTGCTGAAAATCTCTTCTATGTTTTTACCATTCATCCCAGGTAAGGCTCCTTCAATTTTTTTCTTTGATTTCTCTAATGTTTTATTTTTCCCTAAACTTTGATAGTTGTTTTTTCCTTCTTCTAGCTGTAATCGTTATTCTCTATTTATTCCCTCTTCTTCGCCACTCCTCCGGCAACGAAAACCAGCTGCTCCGGCTACAACTCTGGCGAAGAATCCCACAACGGTCAACGCTCGCCGAAGTCCGTTCTACGGTGTGCTTCAACTTCATTTGATGAATCTCAGAATAACGAGGAAGCTTAAGCTGAGTCATTATTGATTTTACCATCCGATATCAGGGACAAAAATGACATTTCCATGTCGGAGAACTTCTGCGATTTACCACAGTTCGAGAGTTTCTTCCCAAATGATTTGTTTCAGTTCGAGAACCTAGCCCGTAAAGGACTTCTTTCAGGATTTCGAAGATGTATTCGAGTCTAACCCGCTTGTGGCTCTTTGATTTCATCGGCAGATTAATCGGCGATAAGTATAAATGGTTTAATATTCGTAATTTTAAAATTTAATTTTGTGTTTAGTTTACCAGTTTTGTTTAAATTTGTTGATTAATGTGAGTGATTAGTGAGTAATTAGTAATTAGTAGTATTAATATGTAACAGCTCCGTCACATTAACGGTAATGCTGATGGATGAGATTTTGCGGTACAGTGTTGTTTTGGTGTTTTGTGCTTCGTTAATAACAATAAACGACTTTAGCAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0134P07-L6QvM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344877" ref_strand="+" ref_description="SGN-U344877        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 2e-36, score=149) genbank/nr: retrotransposon(evalue: 5e-50, score=201)">
      <seq>gtttggttgctaaaggctacaatcaggagtatgggcttgattactccgagacattcagtcctgttattcggcaggaaaccattcgcctggtactgtcactcgccgtgcgcaacaattggctcatcaatcagttggatgtttccaatgcttttcttcatggcatgcttgatgaaacaatctacatgacgcaaccaccgggctatgttgatcctcgcttccctcaacatgtttgcaaactccagaagtctctgtatgggctcaagcaagccccccgtgcttggtacgcacgtctgaaaacgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0134P07-L6QvM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0134P07.1" temp_strand="-" temp_description="C06SLm0134P07.1  AC232641.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0134P07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="8877" stop="7976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8577" g_stop="8276" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0134P07.1" gen_strand="-" ref_id="SGN-U344877" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>302</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0134P07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U344877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8577" e_stop="8276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGTTGTTAAAGGCTTCAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTTGCCTGGTATTGTCACTCGTCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGACGCAACCACCGGGCTATGTTGATCCCCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCCGTGTTTGTTACACACGTCTGAAAATATT</genome_strand>
        <mrna_strand>GTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACAATCTACATGACGCAACCACCGGGCTATGTTGATCCTCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAG-CCCCCCGTGCTTGGTACGCACGTCTGAAAACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0134P07-L6QvM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346798" ref_strand="+" ref_description="SGN-U346798        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 1e-36, score=149) genbank/nr: gi|37530894|ref|NP_919749.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)] gi|18642681|gb|AAK02020.2| Putative gag-pol polyprotein [Oryza sativa] gi|31430072|gb|AAP52036.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)](evalue: 3e-43, score=178)">
      <seq>tcatccacaatacacacgcaaccaccacccacacgcacaagcaacccgaaccaccccatacccacaacatctccaacccgatccgttttgggtccttaccggccacccccgaatcaccaccgcccgtgccaccccccaatactcatcccatgttaacccgtggcaaagccggtatctttaaacccaaaacctttcaggctaccatactaccaaatacaccccttcccgatagtgaaccaacaacctactctgttgcctcaaaaaatgcttattggcgtcatgctatggatgacgagtttaaggctttgactgatcaggaaacttgggttcttgtacctaagccccatgggcggcacccagtgggctgtaaatgggtgtacaaaattaaacacaatgcggatggcagtatttccaggtacaaggctcgtttggttgctaaaggctacaatcaggagtatggtcttgattactccgagacattcagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0134P07-L6QvM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0134P07.1" temp_strand="-" temp_description="C06SLm0134P07.1  AC232641.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0134P07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9303" stop="8218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9003" g_stop="8518" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0134P07.1" gen_strand="-" ref_id="SGN-U346798" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0134P07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U346798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9003" e_stop="8518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCCACAATACACCCACAACCACCACCCACACTCACAGCCAACCCGAACCACCCCACACTCATAACATCTCCAGCCCGATCCGTTTTGAGTCCTTCCCGGCCACCCCTGAATCACCACCACCCGTGACACCCCCCACTACTCATCCCATGTTAACCCGTGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGTTAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGATTTTAAGGCTTTGACTGATCAGAAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCTAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGGCAGTATTTCTAGGTACAAGGCTCGTTTGGTTGTTAAAGGCTTCAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTC</genome_strand>
        <mrna_strand>TCATCCACAATACACACGCAACCACCACCCACACGCACAAGCAACCCGAACCACCCCATACCCACAACATCTCCAACCCGATCCGTTTTGGGTCCTTACCGGCCACCCCCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCCGTGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGGAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCGGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGTCTTGATTACTCCGAGACATTCAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0134P07-L6QvM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319912" ref_strand="+" ref_description="SGN-U319912        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | fumarate hydratase, putative / fumarase, putative, similar to SP:P55250 Fumarate hydratase, mitochondrial precursor (EC 4.2.1.2) (Fumarase) {Rhizopus oryzae}; contains Pfam profile PF00206: Lyase | chr2:19505458-19509316 FORWARD | Aliases: T30B22.19(evalue: 1e-85, score=313) genbank/nr: gi|15226618|ref|NP_182273.1| fumarase -related [Arabidopsis thaliana] gi|7436829|pir||T00433 fumarate hydratase (EC 4.2.1.2) - Arabidopsis thaliana gi|2443751|gb|AAB71399.1| fumarase [Arabidopsis thaliana] gi|2529676|gb|AAC62859.1| putative fumarase [Arabidopsis thaliana] gi|15809968|gb|AAL06911.1| At2g47510/T30B22.19 [Arabidopsis thaliana] gi|17064768|gb|AAL32538.1| putative fumarase [Arabidopsis thaliana] gi|28059023|gb|AAO29979.1| putative fumarase [Arabidopsis thaliana](evalue: 8e-84, score=313)">
      <seq>aaaaactaattctttacatattcagtttacttcaaaatctccattgatctaatcgcgtaaagagctatggcgatgctcgtagcatcccgtcgattatcaacgattattgtacgttattcgtcttcctccaggttttgctcaacgtctttcagggaggaaagagatactttcggtcccattctcgttcccgacgataagttatggggggcacaaacccaaagatccctgcaaaactttgaaattggaggtgagcgtgaaagaatgcctgaaccaatcatacgagcatttggcattcttaaaaagtgtgctgccaaggtgaacatggagtatggccttgacccatctatagggaaagcggtgatgcaagctgcccaggaagtagcagaaggaaaattgaatgaccattttcctttggtggtttggcagactggtagtggaactcaaagtaacatgaatgcaaatgaggttattgcaaatagagcatctgaaattcttggccataagcgtggcgaaaagcacgttcacccaaatgaccacgtgaacagatcacaatcttcaaatgacacatttcctactgtgatgcatattgctgctgctatggagataaataaaagactagtaccaaacttaaaacagttgcatacttcactacactcgaaggttgactttattttttcatttggtctgttttgttttaaaaagtaggcacaacaaagtgggaaactggggaattcaaccttcccctttagggaattttgaacactcttaagtgctggtctaactccttgaattggtcaacgggtattcgttttatatgtacatatatagtaatatttacctatataagggtgtttgatgaaccaccctagcttatcccctctaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0134P07-L6QvM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0134P07.1" temp_strand="+" temp_description="C06SLm0134P07.1  AC232641.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0134P07 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30437" stop="43771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30737" g_stop="30933" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30934" i_stop="40617" i_length="9684">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40618" g_stop="40735" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="315" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40736" i_stop="40857" i_length="122">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40858" g_stop="41007" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="465" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41008" i_stop="42944" i_length="1937">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42945" g_stop="43055" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="576" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43056" i_stop="43163" i_length="108">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43164" g_stop="43471" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="884" r_length="308" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="885" polyA_stop="897"/>
      <MATCH_line gen_id="C06SLm0134P07.1" gen_strand="+" ref_id="SGN-U319912" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>884</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0134P07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U319912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30737" e_stop="30933"/>
          <exon e_start="40618" e_stop="40735"/>
          <exon e_start="40858" e_stop="41007"/>
          <exon e_start="42945" e_stop="43055"/>
          <exon e_start="43164" e_stop="43471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTAATTCTTTACATATTCAGTTTACTTCAAAATCTCCATTGATCTAATCGCGTAAAGAGCTATGGCGATGCTCGTAGCATCCCGTCGATTATCAACGATTATTGTACGTTATTCGTCTTCCTCCAGGTTTTGCTCAACGTCTTTCAGGGAGGAAAGAGATACTTTCGGTCCCATTCTCGTTCCCGACGATAAGTTCGTACTTTCTCTCTCTCTTTATTGATTTGAATGTTTTCCTTTACTTTATTGATTATCTCCTTTTAACTTTTTAGTAGTTCGCTGGAATGTATTTCTTCAAAATCCACCTTATAGTTGAGTTGAGCCTGTTTAGATTGAAGTTGGTAAAACCTATTTTAGTGTTTGACAAACACTTAAAATAAATTCACAATGAAAATTACAAGTTTAAAGTAGGTATTCCCCTATTTTTTTAAACTTAATAGTTGCTAAAATTTGACTATTTAGAAACTACTTTTAAAAAACTATTTTTTGTAAAGATAAGGCAAACGGGTTCTTAGTGTGCTTACGCTTTTTGGAACCATGTTATGGTAAAACAACAACAACAAACATGGTGTAATCTCATGTGTGGGATTTGTGGAGATTAGAGGGTAAGCACACCTTATTCATGTCTTGAGAAGGTAGAGATACTATTTTTCCATAGACATTAGATTAAACAAACTATGAAAAAGAGGTAGCAGTAACAAGCAAGAACAACAAGTACATAAGACATCGAGGATAAAGAAATAACATGTAGTAATAGCAATCTAAATATTTGGCGGAGAAGAATACTAATACTAATACTCCCAAGAACGGGAAAGAAACATGGCCGACTTCCAACTAGCCTTTCTACCTAATCCTTCACCACCAAACCTTTGGTGGTGATATTATTGTCATATCGTGCCTAATCACCTCATCTCAATACTTCTTAAGCCTACCTCTACTTCTCCTCAAGCCCACTACGTACAACCTCCCACACCTCCTAATCGGAGCATTTGCATATCTCATTTTCACATGCTCGAACCATTTCATCTTCTTTTCCGCATCTTATCCTCTACATGGACTACTCAACCTTGTCCTGAATGACTTTTCTCCACACATCCACCTTAACATCCTAGTCGCTGGTGGTTTCATCTTTTGGACAGGAGAACTTCACTTTATAGAACTAAGGGATCCTCATTCATTATAACATAGTCGATCTAAGTAATCTAACGAACACTTCGTAGAACTTACCTTTTAGTCTAGGTGACACATTTTTATCATACAATATACTAAACGTGAGCCTCCATTTCATCCACCTTGCCCCGATATGATGAGTGACATCTTTGCTGATCTCCCATTACCTTGGATTATTGACCCAAGTACGTGAAACCTCCTCTATTGGGGATGAACTGTGTGTCAAGCCTCACGTCCATGTACGCTTCATGAGAAAAGTCATTAAACGTGCATTCTAAACCTTCAACTTTGGTCTTGCTCAACTTGAAACCTTTTGGCTCTAGTATCTGTATCCCAACTTCCAGCCTCGCGCTGACTCTGCTTCATGTCTCGTCAATCAGTACTATGCCATCTGCAAATAACATGCATTATGACACCTTTCCTTGAATGTGTTAGTGCGTCCATCTCCAATGCAAACAAAATTGGGCTAAGAGCAGATTTTTGATGCAACCTGTTCTGAGTCACTCCCACATTTTGGCCTTGGTTTTAGCACCATCATGCATATTCTTGATCATCCTAAAGTAAGAGTAAGTCACAAAAATTCCTTAGATCTCCAAACATCTCCAAAAAACCTCCCTCGGGACTTTTTCGCAAGTGTTCTCTAGGTCTATGAACACCATATGCAAGTCCCTCTTTCTCTTCTTATACTGTTCCACCAACCTCCTTACAAGGCAAGGCGAATGACTGTATTGCGCCCCAACATGAATGTGAATTGATTCTCAAAATAGGCACTCCTCTTCACCCTCGCTTCTACCACTCTCTTTCAGAGTTTCGTAGCTTGACACCCTTATAATTATTGCAACTCTAGATATCACCCTTATTTCTGTACAACCGGATTATCATACTTCGTATCCATTCTTTGGGCATCTTTGTCGTCTTAAGAATGTCACAAAAAAATCCAGTAAGCCATTCCAAGCCCGTCTTGCCCGCGTTCTTCCAAAACCCTATTAGAATTTTGTCCGGTTTTGTCAACGTCCCCGTTCATTTTATGCATAACTCTACCTTTTCAACCTTTACACACCTATGATATCCAAAGTCTCGATGAATCTCGGAGTGCTCCAAATCATCCATCACAAAGTTCTTGTACTCCACTACATTCAAGAGTTTATAAAAGTATGTCTGTCATCTATGTCTAATAAGTGTCCCTTCAACTAAACCGCACCATCCTCATATTTGATTCACTTCACTTGGTCCTGGTCATGAGCCTTCCTCTCTATTGTTAGGGTTTACCCATATTTGAGTTTTAATTTTATCTTGAAGGAAAGTCAAGGTATTACCATTAATGCTTTAACTTTTCTCAAAGGAAAAGCATAATTTTCTTCCATATTTGGGTCATTCCTTAGAGGAAAAGTTTGAAGGCGCCTCTTCTCATATCAAGAGTCTAATAGCATCCACAATGTAGACATTTAAAAATTTTGTTCATGGAGAGATTTATTCTCAACAGTTTTAATGTTTTTCTTTTATATTAATTTTCACATAATAACTAGTAAATTTACTCGCGCTTCCACAGGCGTAAGAGAAAAATAGATTATTGTGCTAATTTTTATTTTTATAAAATCAATCTTGACTAATTTAATTATTTTCAACTACAATGGTGAGATAACTCATAACATTGCTCGGTAAAATTTTTTGCTCTTCCATTATGAATTTTGTATATATATATATATATATATAGATAGATAGATAGAGAGAGAGAGAGAGAGAGAGATAAATGTTAAAACATGATATTTAAGCACTTGCAAATTTATATATACAGAGTAAGGTAAAGGCTAAGACATGATATTCGAGCACTTATATGTAAGATAAAGGTTAAAAGATGATACTTGAGCACTTGCAAGTAATAACCTTCTTTTTCCATTTTTGTTGTGTGTGTGTGTGGGGGGGGGGGGGGTTGAACTTCACCAAAAGAGAAGAATGTAATGGTTGTAAATTCATCCAAAACGTTACAAAAGATTAAGCTGAAAACAATTTTAGATATTGATCCGTACATTCGTCTAAATACATTAAGAAAACACCACCTCTATCTTACTATCACAAAGATAATATAGAAAAATGTCTTTAGTTTAAAGTTGTTACACTGATAATCATCCATGAATTAGCAATGCAAGCAACCAAATGTTATCTATAACTGATTTAAGTCTAACAATCAAGTAGATCGAAACATATATTTATTAATAATACGCACAATTTCCATAAATAACACCCAAAAACTAAGAATCTTTACTTACCTCTTTATGGCTGAGGGAAGGACTTGATCTTGCACCTTAGCCTTGGGTGTGCTGTTGAAATCTTTAGTGCGACTCCAGATGCATCAAGTACACTAATAAGTTCACCCGCACATGTAGAAGGGTGTCCAATAAGTTGACAGAGAAACCTTTTAGTGTTTTTTATTAGTGACAATTACATTTTAAAATTCTTTGTAAATGTCTCCAAAGCCTATAGCGATATTGGATCCAATGGCAGATAACTAATGTTCGTAAAGACTAACACTTTTTGTTAATGTGCATATATATTGCAACTGAGAATTATTTTTGTTGTAGTGATTGTGTCCGGTGACACATTTATATTTCATCCAAAAAGATACATATGGGACTATACCTTATTATCTCCATTGCATTGACATGGTTGTGTTAATTGATGATAATAAAACTATCAATCCATCTAAATTCAACTATTAATCAGAGAGTTGACTAACATAGAAGTTGCCTGAATCCCTTTGTCCTGAAACTTCATGCGACATTTATCCAGGATGAAAGACCCCTTAGCGGTTGAGGGTATTTGTTGGAGAGTATGCCACCTTTATGCTTGGTCTTAATTAGTTGCATATTCTGCAAAACCTGCAGCTACATTGACATATCTTAATTTGATTGGCTTCCCTAAAGCAATGTTGGATATCCCACTTTGACTTGGCCTAGCATCTGGAGAGTACGTTGGAAGATAACTCTCATATTTGAAAGTTAGGAGTACAAGATCATCTTAGGCGGTAAGAATAGGTTACATTTGAATTCTAAATAGTGAGTAATTGGCAGTTGTGTTAATTTTCACATTTGAAGTGACATATACTAAGCAAGCCAAAGGACACACCGTTTGAGTCCTTTCCAAACATATTTCAAGACTAACAAACCTAGAAGACCTTAGACTTGAAGTTATGCAAACAGATTTACTTAGGAGTAAAATGCATGAATGAAATTGCAGAAGTTAAAATACTCGATCATTAAAACATCTGAAAATAATTTCAATTTTTTGACAATCAAAGGCATAAAGTTTTCATCCGGCAAAATAAAAAGAGAATTGCAAAATATAGATATGATAATGTGCATACCTTTGCCAAGTATGAAGATGATTCTACTAAGACTATTTGAATTTGTAAAGATATGTTCGGAGTTCAAAGTAATTAACAAACCCGGGTAGATGAATTGTGTCTGCATTCAAGGTTAGTGTTTGCTACTTCTGTGTCCACAATTTCAAATCCTAGCAACTTGGAAAATTCATGTACTATATGTGAATTCACGTACTTTGGTGTCGGGTAACAACTATCGACTGTAAGTATTGGTGAAAAATCTTTCTTATATCTGTGTGCACAATTCCAAATCCTAGCAACTTTGTTAATTCTAATTCAACACGTGAATTCACGTACTTCAGCATCATTAACCATGAACTATTATCCCCAAATCCCCAATTCTAGTGGTTGATAATTTAGGGAAGTCGAGAGATAGATGAGTGCTTTAAGAAGCTTTAAAAATTACTTATGAAGGGAGAAAATTTTATGGATAAAGGGAACTAGGAACAATTTCAAAGGACGGCATTGTCGAAGCGGTATTTACTTGTCCTTTGCAAGCATTGTGATTTTAAGAGGAATTTACCAAATATTGTTGGAGTATAGCGATGTGAGTAAAGCAAAGTAAAAGCATATTTTAATGGTTAGTATAAAGAGGCATTGTTGGGAAGATGGTGAGGGGAGGAAGTTGAGTGAGGAGCATACCTGATGAGCGATGTATGTTAGTGGGGTGTTGAGCAGCGCTTCGAAGTAAGCCGTGGAGAATGTCGGGCTCTGAGTGTGGATTGTTTTCGTAGAAGAAGGAAGCAAGGGCATGAAAGGTAGTGGGCAGGAAGGGAAATGTAGCGGGAAAAGAAAGTAGTTGGGAAAGCAAAATAGATGGTAGGTTTATTAAAGGTGGCGGCCGTTGGTAAAAGCCACGACATTTGTGAAGAGTGGTACTAGGTGTTGAAAGAATGAAGCAAAAGTGACGCTTGAGTGTGTGGTTGTTGTAGTGTGAGGGGAAGGGTAGTTTTGTCTTTATATAAGTAAAAAGGAATTCTTGGCTTGTGGATGCTCCACGTCTTTATATATATATATATATGTATGTATGTATGTATGTATATGTATATGTATATATGTTTTTAGTATAAGTTTTTGTTATCTAATTTATCATATCTTGATTTGCAATTGTAAGCTTCTGAATGACGCACTGGTTACTTTTGAACCCAACGTGTAACACCTTGGCTAGCCTGTACAACTTTTTGTCTCCGCCTTTGTCCTTAAGCTTCCTACAGACGTCTAAGTTGTAGTCTTTGCCACCGTAACTAGTAATTTGCCTCCTTCCTCATCTTTGCTCTCCATCAGCTTCCCATATGCCATTTTCTTAGCCTCCACTTATCCTTAAAACTATTCGTTCTTCGATCAGTCCCCTTAGGGGTCGTTTGGTAGGCCACATTAAAACAAATAGTCCATGTATTATGGATGATATTATTTAGTACTATGTTTAGTAGGAAATTGGGTCTATGTATAACTAATCCATGGATTAGTTATGGATTATAATACCATAGAATAAGTCTACTAAAGACAAAAATATCCCTCAAAACATTTTAATTATTTTGTTTATTTTCTTGATTTTATGTTTTATGGTTGGTGCTAGTAATTTATTTAAATAAATTAGCTTACAAATTATTTAGAGAGAGTTATTTGTTACTCTCTCTCTCTCTCTCTATATATATATATATATATGTTCGCGAGGTTCTCTAATTATTTGTATTTTGAACAATTTATAAAATTGAATACATATTAAAATTACAACTTGCAATTTTATGCATAAATGTAGATGGTTTTTTCAATTTTACTATTGTTTACCGTCTTTCCAATTTTAAAGTTGATAGTTTATAAATTGACATTTGTAAGTGATCAATTTACTAAGATGACAATTATTTATCCTCTAGTAACTTAAGTAAAAAAAAGGCAAACATGACAACAAAATTGTTCTTTTCATAGCTAGTTAGAAGGTCATAAAAAAATAATATTGTCCGACAATTATTTACCTTAACCCAATTGGATAATAATTCAAGGGTATAATTGGAAAGAAGTTTTTTATGAAGATTTAATCCAAACACAAGATGAGGTGGGAAACAGTGAACCAAACACTTGGTAAGAATAATCCATGCATTATTGATTACTGCATTACTAATCCTAATGCTGACATTACTAATCCCAACATTATTAATCTTTGTATCAAACGACCCCTTAGTGTCCACTAGAGTAACCCTTTGAGACCCCTAGAATCTCTCTAGCTCCCCTCTAATGCAAGTGATCATCGTAGAACACATGCTACTCGTGTCCCAAATGCTACTCCTGGCTTCCATCATCATCAACTTCTCCCCCAACCTTTGAGCCTTATCCTTAGTCAAACTCAAGGCATCCTACTTGATCTTTGGTTGACCATACACGATCCTTTTCCGTTTAATCTCTAAGTCCATCACCAAGTAGTGAAAATCATTCGGTTGAGGATGCTATTGTGTAGATATAAGGTGTAAGCTGGTTTTTGCTCAAACTATATAGATAATTACAACAACAACATCAACAACAAACCAAGTGTAGTTCTATAACGTGAGTTTTGAGAAAGGTAGAGTATACACAAATCTTACCTCTATCTCAGAGGTGAGGTAGAGAGGCTGTTTCTAATAGACACTCGACTCAAGACAAAACTAGTCTAAAAGGGATGTAATAGAAGTATAAGAGATAATGAAGAGTAACAAAAACAACAGATTGTAGTAGAACATCCTACAACAAAATAATACTACAATCGAACTACATGAAACAATTGATAGTAACTGAAATTGAAGAATAAGGGGACAAAACACTCCTACTACTAGTATGGACGAACTCCTACCTGCTAACCTAATTTGTGTCCTCCACATTTTTCTATCTAAGATCATGTTCTCGATAAGCTGCAACTGTTCCGTTCCCTCCATACTTCTTTGGTCTACCTCTACCTGTACTAAATCCACCATTGACAACCTCTCACACCTCTATATTGGTGCATTCATGCATCTCCTCATCACATGCCCAAACTACCTCAACCTCGCCTTTTGCATCTTGTCTTCCACCGAAGTCATCTACTTGTTCTTTAAGATCTTTGAGTTTGCATATAAGCTCATTATTAGTTTGGAAAGAGAAAGCTCCATCGTCTCATTATTTGTTAATACGAAGGAGCCATGGAAAAATATGTGGAGTGATTAAAGGCACAATGTATGAATAATGTACCAGGAAAACTCTTTATCAAAAAATAATGTACCAGGACAACTTACTGGTAAGACTGGAGGAGTCACAAATTGCCCCACTTAAAATTGAGATTCCTTAGGCAATTTACAGCTCTTTTGACAAAACTTTCCTAGAGATGTGATAATCCAAAGAACAGTGCGACTCAATGGAATTCTTTTTTTTAAAAAGAGAATATAGGTGAAGTGAACATACTAAGTATATGATTAGATATTTCTATTTATAATTGAAGAATATACACAAACTTCTAATGAACATAAGGAACCAAAAATTTAGTGTGAAAACTAATCAAGTGGTAATTCCTATTTTTTTCTCAGTAGCAAGGAAGAATGCCTTTTTTTTTCTTCTTATTTCATCTATATAAGGAGATCTAGAAATGAATTTTTGGGAACAAAAAATTTAGTAGATCACCGTACACATAAAAAATAACCAAGTAGTATTGAATACGGAGGTGAGTACCTTATGGTGGGTCCAGATTCCACTTATTGCAGTGTCTTGAAACCTCAACAATATCTGCATCCTTCAAAACCTCAAAGCAATTTAGGGAGACAAGTGACTGATCAAACCTCCCTTTTAGAACTTCAATTAATATGGTGTGAAAGAAGGTTGGTTATTTAAGGATTAGGAATTCTTGATGGTGCTAAGAGAGTGCGACAATTTGTGTAGGAACCTTGAGCTCCGATACCTGTACTAACAAAGAAAGAAGAGAACTCATAAGAGAGGGAATTAACTCATGAAATGTCATTCATTTGATGAAGTGTATAACAATGTACAAAGAGGGTCCTATTTATAGGTAGGGAACCTTGCACAAGGTAGAGTCCTAAAACAATGCTAATTTTCTCTCTAACTAACTAACTAACTCACAATAATAACAACATACCTAGTGAAATTCCACAAGTAAGGTCTGGAGAGGGTAGAGTGCACGCATACTGTACAAGTACCTCGTGGAGGTACAAAAGTTGTTTCCAAAAGACCCTTATCTCATGTACAACAAATCTAGGTACAAAAAGAGGAGATACTGAAGAGAATACAACAAGTAATAAGGTAACAGTGCAAAGTCTACCAAGAAGGAGCCAAAAACAACAATTCAATAATGTTATAGTCAAAACATGCTCAACAAACTAAGATCCATTATAGAAAACAAATAATACCAATCATTAACTCAACTACAAAAATACTAAACACCAACCACCCTAAGTACAAAAGTACTAAACACCAGCCAACCATAGTATAATAATACGAAACACCCCCTAGGCCTACAAACCCTCTACCCTACTTCGTGTTTGCCATGCCCTCCTATCTAAGGTCATGTCCTCGGTAACCTGAAGGTGCTTCATATCCTGCTTTAACACCTTTTCCCAATACTTCTTCGGCCTACCTCTGCATCTCTTTCTACCCTCTATAGCAAGCCTCTTGCACCTCCTCACAGGTGTGTCTACGCATCTCCTCTTCACATGTCCAAACCATCTTAGTCTCGCTTTCCTCATCTTGTCCACCACCAAGGCTATTCCTACCTTATTTTGGATAACCTCATTTCTAATCTCATCGCTCCTAGTAACCCGCACATCCACCTTAGCATTCTCATCTCTGCAACATCTATCTTCTGGACATGGGAGGTTTTGACTGGCCAACACTCTGCCCTATACAAGTAGAAGAATGTTGGTCTAACCACCAATCTAACTAACTAAGAAAGAGAGAGAGAGAGAGAGAAAATCAAATAATAATTTAAGACAATCAATAAAATAATAATAATTATGCTATCTAATCTAGATAATGATAAAGATAAATCTATTCTAAAAGATAATAGCCTAATTAATAAAATAAAATACTAAGTTTTCCTATTCATAAAGGATCTACATCAAGAGGATTCAACTAAAAAGTGTGGGTGGGGGTGGGGTGGATCCTGCAAAATCAGGTGCAGTACTGCAGTCTTTATAGTCTATGTCCTTTGTGATTTTTCCTGGTCTTTCCTTGCAATTGATTAGCCAGAAACCTGATAGTGTTATGATAATTCAGTCTATTTTTTGAAATTCTTTTATTTCGATAAGGCTATAACTATGGTGTGAAACTTTAGTTCTTTTTATCCACATTAACTTGGGCTCAATTTTGCTCCTGTTCAGGTTATGGGGGGCACAAACCCAAAGATCCCTGCAAAACTTTGAAATTGGAGGTGAGCGTGAAAGAATGCCTGAACCAATCATACGAGCATTTGGCATTCTTAAAAAGTGTGCTGCCAAGGTTTGTACTACTATACGCTAGACTGTCAAGTTTATCTCTAATGTTATGTGAAACTTTTGGTGTCGCTCATGCAATGCTGTACAGCCATTTTTGTGATCTTGTGATTATTGCCTCCATTGCAGGTGAACATGGAGTATGGCCTTGACCCATCTATAGGGAAAGCGGTGATGCAAGCTGCCCAGGAAGTAGCAGAAGGAAAATTGAATGACCATTTTCCTTTGGTGGTTTGGCAGACTGGTAGTGGAACTCAAAGTAACATGAATGCAAATGAGGTAATCACATGTTCATGAACTTGAAGTTGAAGGTCCATTCAGGGTCTTTTAATTGCTTGAAGAGGTTACCAATTTATATGACACTCTTTCCTTTTTATAATTGGTAACGTTCTTTCCTTCTTAGTTAGTTCCCAAAAAGAATGTCACCTTTCTATAATTTGTAATAAGTTAGCTTTAAAATTCCCGTTTCACCCTTAATGAGGCTTACAACCACGAAAATATATGTGACTTATTTTAGACCACAAGTTTCAAAAGTTCTCTTCTTTTCAAACACCCTCACATAAATTGGGATGGAGGGAGTATTTCTTCTTATCTAGTTCCCAAGCTTCTTGAATATCTAATTGTAAAGGTCCAATCCAAGGAATACAATCTGATTTTTCATGAGATGATGAAGTTCTGGATTAATTTAAGCTTCTCTTTCGGAATTGAGTACATCTATTCTTATTTTTTTGTAACTTCTCCTATCTCTTTTAATAAGTTTTTTGTCTTTCATCTACAAAGTAATAGTCCCTCCATTCCAAAAATAAACCTGTTTGGATTGGTTTTTCATTTTTGACTTATAAGCCAAAAACCATAAGTTTTCTAACTTATGGTTTTTGGCTTATTTTTAGCAATTTAAGCTTAAAACTAGGTGCTTATAAGCACTTTTTTTAACTTAGCCAAACACTCCAGATGTGTGTAAAAGCTATTTTAGCTCAAAAACACTTGAAATAAGCCAATCCAAACGGGCTCTTAGTGGTATTTTTAGCTTGGGCATACCACTTAAGAAACTACTCATTCCTAGAAAATAAGGAGTGTTTCACTAACTGTTCCTAATTAAATGCCTTGAAGAAAGAACTGATTATTTAATGGTGTAAAACTCCATGTAATAAAACAAGGGTAATTTTGGAAGAAAATGAAAAGGCTAAAACACCACTTATTTTGGAATAGGAGGGAGTAATGATATAATAGTGGGCAAATCGTATAATTCATTTTTTTTTGGTGCTAATTGGTCCATCTATTTGTAGTTGGCATACATCCGTTGTTTGTAATCTTGAAGAAGGGAATTATATTCTTTTGTGTTTATAGATGAGAGTGTATGTCTTTGATGCATCAGGTGGATGCTAGAAGCATATTTGATCATTTATCATAGGTGTAGTCATCTCCAGATGATAGATTAGATTTTAATACATTTAAAATACCCAAAGCTATGTTTAGTTGTTCTCTTAGCTTTATTAAATGAATGGACCTTGTAGGATGCGACTTTGAGGAGATTTACCTAGTTGAAGTATAATAAATTGTGCAGCAATAACGATAGATGAAACATTGCTCTGGTCGATTGCAGGGTCAGTTTTTGGAAGAGTGTTGATTCTGGCTTGCAGCGGCGATTTCTTTTTCTTTTTAGTATGTAAGACTGAAAGAAATTACTTTGTTCAAAGTTCGTCTATCTTCAAGATAAGTCAACAATAGTGCTGAATGCATCAGATTCTACATGCATTAGGTGTCTTCTATGTTTTGACAGTAGCTAGCATTTGTCAGATTGTGGCGGCTTGTAAGATGTTTGTGCTACAAAAATGTTGAGGAAGTCAGCAATTTTTTTTTGATGACAAGAGGAACCCGCAGCCGCTACCATTTGTGTGCGCACAGGGTAAAAACCCCCGCTCCTATGCAATAGCTCGCAAACTACATAGGAGAGATAACCCGCACTAGGTAAGCTTGGTACGACGAGCTCGACCCAGAAGGCAAACCCCTTGCTTTCGTTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATGGAAGTCCCAAGCTCAAACCACTAGGCCACCCCGAAGGTTTGAGGAAGTCAACAATATTGTGCGAGCATTTTGCTGACTTATGTGCTGCAAGGAATTATGTTCTACAAAGGGAAGAGATCTTGATATGGTTCTTTCTAGTGATGTCTTATCTGAACTTTTCAGGTTATTGCAAATAGAGCATCTGAAATTCTTGGCCATAAGCGTGGCGAAAAGCACGTTCACCCAAATGACCACGTGAACAGATCACAATCTTCAAATGACACATTTCCTACTGTGAGTTTCCTCCTTTAGATTACTTGTTTGCAAGATATATTGATATGTTTCTAATGTTCCTTTCAAACTTATGCTGAGTTCTTAGAGTGGTTATTTTTGCATGTGTAGGTGATGCATATTGCTGCTGCTATGGAGATAAATAAAAGACTAGTACCAAACTTAAAACAGTTGCATACTTCACTACACTCGAAGGTTGACTTTATTTTTTCATTTGGTCTGTTTTGTTTTAAAAAGTAGGCACAACAAAGTGGGAAACTGGGGAATTCAACCTTCCCCTTTAGGGAATTTTGAACACTCTTAAGTGCTGGTCTAACTCCTTGAATTGGTCAACGGGTATTCGTTTTATATGTACATATATAGTAATATTTACCTATATAAGGGTGTTTGATGAACCACCCTAGCTTATCCCCTCTAAA</genome_strand>
        <mrna_strand>AAAAACTAATTCTTTACATATTCAGTTTACTTCAAAATCTCCATTGATCTAATCGCGTAAAGAGCTATGGCGATGCTCGTAGCATCCCGTCGATTATCAACGATTATTGTACGTTATTCGTCTTCCTCCAGGTTTTGCTCAACGTCTTTCAGGGAGGAAAGAGATACTTTCGGTCCCATTCTCGTTCCCGACGATAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGGGGGGCACAAACCCAAAGATCCCTGCAAAACTTTGAAATTGGAGGTGAGCGTGAAAGAATGCCTGAACCAATCATACGAGCATTTGGCATTCTTAAAAAGTGTGCTGCCAAG..........................................................................................................................GTGAACATGGAGTATGGCCTTGACCCATCTATAGGGAAAGCGGTGATGCAAGCTGCCCAGGAAGTAGCAGAAGGAAAATTGAATGACCATTTTCCTTTGGTGGTTTGGCAGACTGGTAGTGGAACTCAAAGTAACATGAATGCAAATGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTGCAAATAGAGCATCTGAAATTCTTGGCCATAAGCGTGGCGAAAAGCACGTTCACCCAAATGACCACGTGAACAGATCACAATCTTCAAATGACACATTTCCTACT............................................................................................................GTGATGCATATTGCTGCTGCTATGGAGATAAATAAAAGACTAGTACCAAACTTAAAACAGTTGCATACTTCACTACACTCGAAGGTTGACTTTATTTTTTCATTTGGTCTGTTTTGTTTTAAAAAGTAGGCACAACAAAGTGGGAAACTGGGGAATTCAACCTTCCCCTTTAGGGAATTTTGAACACTCTTAAGTGCTGGTCTAACTCCTTGAATTGGTCAACGGGTATTCGTTTTATATGTACATATATAGTAATATTTACCTATATAAGGGTGTTTGATGAACCACCCTAGCTTATCCCCTCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>5</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="4095" PGL_stop="3759"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4095" e_stop="3759"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="4095" e_stop="3759" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4095" stop="3759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335079" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTTAACATGTAGCAACAGCAAGTACTATATCATTAACAATTACCGTCAAGTGCATACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATTATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTACGTGTCAGTTTGTGACACTCGATCC</gDNA_template>
            <first_frame> T  E  *  I  S  S  A  N  S  K  *  K  S  I  Y  T  K  *  Y  H  K  I  N  Y  D  T  *  H  V  A  T  A  S  T  I  S  L  T  I  T  V  K  C  I  H  E  D  S  S  L  N  T  I  L  I  W  E  L  C  S  L  D  *  V  Y  *  H  L  S  R  F  I  I  F  I  S  L  V  S  V  R  D  T  P  L  P  H  I  H  *  S  S  C  V  G  T  *  H  S  D  P  L  N  L  R  V  S  L  *  H  S  I  </first_frame>
            <second_frame>  L  S  R  Y  H  R  P  T  Q  N  R  N  Q  Y  I  P  S  N  I  I  K  S  T  M  I  L  N  M  *  Q  Q  Q  V  L  Y  H  *  Q  L  P  S  S  A  Y  M  R  T  Q  A  S  I  P  Y  S  F  G  N  Y  V  H  *  I  E  Y  I  N  I  F  Q  D  S  L  S  L  F  L  L  C  R  Y  V  T  L  R  S  L  I  F  I  N  P  L  V  S  V  R  D  T  P  I  P  *  I  Y  V  S  V  C  D  T  R  S </second_frame>
            <third_frame>   *  V  D  I  I  G  Q  L  K  I  E  I  N  I  Y  Q  V  I  S  *  N  Q  L  *  Y  L  T  C  S  N  S  K  Y  Y  I  I  N  N  Y  R  Q  V  H  T  *  G  L  K  P  Q  Y  H  T  H  L  G  I  M  F  I  R  L  S  I  L  T  S  F  K  I  H  Y  L  Y  F  S  C  V  G  T  *  H  S  A  P  S  Y  S  L  I  L  L  C  R  Y  V  T  L  R  S  P  K  S  T  C  Q  F  V  T  L  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLm0134P07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="5592" PGL_stop="4763"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5592" e_stop="4763"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="5592" e_stop="4763" e_length="830"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5592" stop="4763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324057" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAGAGATATTCTCAGTGACACATCATTAGCTTCATCTTTCAACTTTCTTCCTTTATTGCTTTTTACTTTGGTTGCTGAAAATCTCTTCTATGTTTTTCCCATTCATCCCAGGTAAGGCTCCTTCAAATTTTTTCTTTGATTTCTCTAATGTTTTATTTTCCCTAAACTTTGATGGTTGTTTTTCCTTCTTCTAGCTGTAATCGTTATTCTCTATTTGTTCCCTCTTCTTCGCCACTCCTCCGGCGACGAAAACCAGCTGCTCCGGCTACAACTCTGGCGAAGAATCCCAAAACGGTCAACGCTCGCCGAAGTCCGTTCTACGGTGTGCTTCAACTTCATTTGATGAATCTCAGAATAACGAGGAAGCTTAAGCTAAGTCATTATCGATTTTACCCTCCGATATCAGGGACAATAATGACATTTCCATGTCGAAGAACTTCTGCGATTTACCACCGTTCAAGAGTTTCTTCCCAAATAATTTGTTTCAGTTCGAGAACCCGGCCCGTAAAGGACTTCTTTCAGGATTTCGGAGATGTATTCGGGTCTAACCCGCTTTTGGCTCTTTGATTTCATCGGCAGATTAATCGGCGATAAGTATAAATGGTTTAATATTCGTAATTTTAAAATTTAATTTTGTGTTTAGTTTACCAGTTTTGTTTAAATTTGTTGATTAATGTGAGTGATTAGTGAGTAATTAGTAGTATTAATATGTAACAGCTCCGTCACATTAACGGTGATGCTGATGGATGAGATTTTGCGGTACAGTGTTGTTTTGGTGTTTTGTGCTTCGTTAATAACAATAAACGACTTTAGCAATTATTAATTATTC</gDNA_template>
            <first_frame> A  E  I  F  S  V  T  H  H  *  L  H  L  S  T  F  F  L  Y  C  F  L  L  W  L  L  K  I  S  S  M  F  F  P  F  I  P  G  K  A  P  S  N  F  F  F  D  F  S  N  V  L  F  S  L  N  F  D  G  C  F  S  F  F  *  L  *  S  L  F  S  I  C  S  L  F  F  A  T  P  P  A  T  K  T  S  C  S  G  Y  N  S  G  E  E  S  Q  N  G  Q  R  S  P  K  S  V  L  R  C  A  S  T  S  F  D  E  S  Q  N  N  E  E  A  *  A  K  S  L  S  I  L  P  S  D  I  R  D  N  N  D  I  S  M  S  K  N  F  C  D  L  P  P  F  K  S  F  F  P  N  N  L  F  Q  F  E  N  P  A  R  K  G  L  L  S  G  F  R  R  C  I  R  V  *  P  A  F  G  S  L  I  S  S  A  D  *  S  A  I  S  I  N  G  L  I  F  V  I  L  K  F  N  F  V  F  S  L  P  V  L  F  K  F  V  D  *  C  E  *  L  V  S  N  *  *  Y  *  Y  V  T  A  P  S  H  *  R  *  C  *  W  M  R  F  C  G  T  V  L  F  W  C  F  V  L  R  *  *  Q  *  T  T  L  A  I  I  N  Y   </first_frame>
            <second_frame>  Q  R  Y  S  Q  *  H  I  I  S  F  I  F  Q  L  S  S  F  I  A  F  Y  F  G  C  *  K  S  L  L  C  F  S  H  S  S  Q  V  R  L  L  Q  I  F  S  L  I  S  L  M  F  Y  F  P  *  T  L  M  V  V  F  P  S  S  S  C  N  R  Y  S  L  F  V  P  S  S  S  P  L  L  R  R  R  K  P  A  A  P  A  T  T  L  A  K  N  P  K  T  V  N  A  R  R  S  P  F  Y  G  V  L  Q  L  H  L  M  N  L  R  I  T  R  K  L  K  L  S  H  Y  R  F  Y  P  P  I  S  G  T  I  M  T  F  P  C  R  R  T  S  A  I  Y  H  R  S  R  V  S  S  Q  I  I  C  F  S  S  R  T  R  P  V  K  D  F  F  Q  D  F  G  D  V  F  G  S  N  P  L  L  A  L  *  F  H  R  Q  I  N  R  R  *  V  *  M  V  *  Y  S  *  F  *  N  L  I  L  C  L  V  Y  Q  F  C  L  N  L  L  I  N  V  S  D  *  *  V  I  S  S  I  N  M  *  Q  L  R  H  I  N  G  D  A  D  G  *  D  F  A  V  Q  C  C  F  G  V  L  C  F  V  N  N  N  K  R  L  *  Q  L  L  I  I  </second_frame>
            <third_frame>   R  D  I  L  S  D  T  S  L  A  S  S  F  N  F  L  P  L  L  L  F  T  L  V  A  E  N  L  F  Y  V  F  P  I  H  P  R  *  G  S  F  K  F  F  L  *  F  L  *  C  F  I  F  P  K  L  *  W  L  F  F  L  L  L  A  V  I  V  I  L  Y  L  F  P  L  L  R  H  S  S  G  D  E  N  Q  L  L  R  L  Q  L  W  R  R  I  P  K  R  S  T  L  A  E  V  R  S  T  V  C  F  N  F  I  *  *  I  S  E  *  R  G  S  L  S  *  V  I  I  D  F  T  L  R  Y  Q  G  Q  *  *  H  F  H  V  E  E  L  L  R  F  T  T  V  Q  E  F  L  P  K  *  F  V  S  V  R  E  P  G  P  *  R  T  S  F  R  I  S  E  M  Y  S  G  L  T  R  F  W  L  F  D  F  I  G  R  L  I  G  D  K  Y  K  W  F  N  I  R  N  F  K  I  *  F  C  V  *  F  T  S  F  V  *  I  C  *  L  M  *  V  I  S  E  *  L  V  V  L  I  C  N  S  S  V  T  L  T  V  M  L  M  D  E  I  L  R  Y  S  V  V  L  V  F  C  A  S  L  I  T  I  N  D  F  S  N  Y  *  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0134P07.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5426" stop="5025"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLMVVFPSSSCNRYSLFVPSSSPLLRRRKPAAPATTLAKNPKTVNARRSPFYGVLQLHLMNLRITRKLKLSHYRFYPPISGTIMTFPCRRTSAIYHRSRVSSQIICFSSRTRPVKDFFQDFGDVFGSNPLLAL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="9003" PGL_stop="8276"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9003" e_stop="8276"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="9003" e_stop="8276" e_length="728"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9003" stop="8518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8577" stop="8276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344877" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACCCACAATACACCCACAACCACCACCCACACTCACAGCCAACCCGAACCACCCCACACTCATAACATCTCCAGCCCGATCCGTTTTGAGTCCTTCCCGGCCACCCCTGAATCACCACCACCCGTGACACCCCCCACTACTCATCCCATGTTAACCCGTGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGTTAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGATTTTAAGGCTTTGACTGATCAGAAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCTAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGGCAGTATTTCTAGGTACAAGGCTCGTTTGGTTGTTAAAGGCTTCAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTTGCCTGGTATTGTCACTCGTCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGACGCAACCACCGGGCTATGTTGATCCCCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCCGTGTTTGTTACACACGTCTGAAAATATT</gDNA_template>
            <first_frame> S  P  T  I  H  P  Q  P  P  P  T  L  T  A  N  P  N  H  P  T  L  I  T  S  P  A  R  S  V  L  S  P  S  R  P  P  L  N  H  H  H  P  *  H  P  P  L  L  I  P  C  *  P  V  A  K  P  V  S  L  N  P  K  P  F  R  L  P  Y  Y  Q  I  H  P  F  P  L  V  N  Q  Q  P  T  L  L  P  Q  K  M  L  I  G  V  M  L  W  M  T  I  L  R  L  *  L  I  R  K  L  G  F  L  Y  L  S  P  M  G  G  T  *  W  A  V  N  G  C  T  K  L  N  T  M  Q  M  A  V  F  L  G  T  R  L  V  W  L  L  K  A  S  I  R  S  M  G  L  I  T  P  R  H  S  V  L  L  F  G  R  K  P  F  A  W  Y  C  H  S  S  C  A  T  I  G  S  S  I  S  W  M  F  P  M  L  F  F  M  A  C  L  M  K  L  S  T  *  R  N  H  R  A  M  L  I  P  A  S  L  N  M  F  A  N  S  R  S  L  C  M  G  S  S  K  P  P  R  V  C  Y  T  R  L  K  I   </first_frame>
            <second_frame>  H  P  Q  Y  T  H  N  H  H  P  H  S  Q  P  T  R  T  T  P  H  S  *  H  L  Q  P  D  P  F  *  V  L  P  G  H  P  *  I  T  T  T  R  D  T  P  H  Y  S  S  H  V  N  P  W  Q  S  R  Y  L  *  T  Q  N  L  S  G  Y  H  T  T  K  Y  T  P  S  R  *  *  T  N  N  L  L  C  C  L  K  K  C  L  L  A  S  C  Y  G  *  R  F  *  G  F  D  *  S  E  N  L  G  S  C  T  *  A  P  W  A  A  P  S  G  L  *  M  G  V  Q  N  *  T  Q  C  R  W  Q  Y  F  *  V  Q  G  S  F  G  C  *  R  L  Q  S  G  V  W  A  *  L  L  R  D  I  Q  S  C  Y  S  A  G  N  H  L  P  G  I  V  T  R  R  A  Q  Q  L  A  H  Q  S  V  G  C  F  Q  C  F  S  S  W  H  A  *  *  N  Y  L  H  D  A  T  T  G  L  C  *  S  P  L  P  S  T  C  L  Q  T  P  E  V  S  V  W  A  Q  A  S  P  P  V  F  V  T  H  V  *  K  Y  </second_frame>
            <third_frame>   T  H  N  T  P  T  T  T  T  H  T  H  S  Q  P  E  P  P  H  T  H  N  I  S  S  P  I  R  F  E  S  F  P  A  T  P  E  S  P  P  P  V  T  P  P  T  T  H  P  M  L  T  R  G  K  A  G  I  F  K  P  K  T  F  Q  A  T  I  L  P  N  T  P  L  P  V  S  E  P  T  T  Y  S  V  A  S  K  N  A  Y  W  R  H  A  M  D  D  D  F  K  A  L  T  D  Q  K  T  W  V  L  V  P  K  P  H  G  R  H  L  V  G  C  K  W  V  Y  K  I  K  H  N  A  D  G  S  I  S  R  Y  K  A  R  L  V  V  K  G  F  N  Q  E  Y  G  L  D  Y  S  E  T  F  S  P  V  I  R  Q  E  T  I  C  L  V  L  S  L  V  V  R  N  N  W  L  I  N  Q  L  D  V  S  N  A  F  L  H  G  M  L  D  E  T  I  Y  M  T  Q  P  P  G  Y  V  D  P  R  F  P  Q  H  V  C  K  L  Q  K  S  L  Y  G  L  K  Q  A  P  P  C  L  L  H  T  S  E  N  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0134P07.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9001" stop="8276"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>726</number_coding_nucleotides>
                  <number_encoded_amino_acids>242</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THNTPTTTTHTHSQPEPPHTHNISSPIRFESFPATPESPPPVTPPTTHPMLTRGKAGIFKPKTFQATILPNTPLPVSEPTTYSVASKNAYWRHAMDDDFKALTDQKTWVLVPKPHGRHLVGCKWVYKIKHNADGSISRYKARLVVKGFNQEYGLDYSETFSPVIRQETICLVLSLVVRNNWLINQLDVSNAFLHGMLDETIYMTQPPGYVDPRFPQHVCKLQKSLYGLKQAPPCLLHTSENI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="30737" PGL_stop="43471"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30737" e_stop="30933"/>
            <exon e_start="40618" e_stop="40735"/>
            <exon e_start="40858" e_stop="41007"/>
            <exon e_start="42945" e_stop="43055"/>
            <exon e_start="43164" e_stop="43471"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30737" e_stop="30933" e_length="197"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="30934" i_stop="40617" i_length="9684"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40618" e_stop="40735" e_length="118"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="40736" i_stop="40857" i_length="122"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="40858" e_stop="41007" e_length="150"/>
          </exon>
          <intron i_serial="3" don_prob="0.974" acc_prob="0.999">
            <gDNA_intron_boundary i_start="41008" i_stop="42944" i_length="1937"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="42945" e_stop="43055" e_length="111"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43056" i_stop="43163" i_length="108"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="43164" e_stop="43471" e_length="308"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30737" stop="30933"/>
              <exon start="40618" stop="40735"/>
              <exon start="40858" stop="41007"/>
              <exon start="42945" stop="43055"/>
              <exon start="43164" stop="43471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319912" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAACTAATTCTTTACATATTCAGTTTACTTCAAAATCTCCATTGATCTAATCGCGTAAAGAGCTATGGCGATGCTCGTAGCATCCCGTCGATTATCAACGATTATTGTACGTTATTCGTCTTCCTCCAGGTTTTGCTCAACGTCTTTCAGGGAGGAAAGAGATACTTTCGGTCCCATTCTCGTTCCCGACGATAA : GTTATGGGGGGCACAAACCCAAAGATCCCTGCAAAACTTTGAAATTGGAGGTGAGCGTGAAAGAATGCCTGAACCAATCATACGAGCATTTGGCATTCTTAAAAAGTGTGCTGCCAAG : GTGAACATGGAGTATGGCCTTGACCCATCTATAGGGAAAGCGGTGATGCAAGCTGCCCAGGAAGTAGCAGAAGGAAAATTGAATGACCATTTTCCTTTGGTGGTTTGGCAGACTGGTAGTGGAACTCAAAGTAACATGAATGCAAATGAG : GTTATTGCAAATAGAGCATCTGAAATTCTTGGCCATAAGCGTGGCGAAAAGCACGTTCACCCAAATGACCACGTGAACAGATCACAATCTTCAAATGACACATTTCCTACT : GTGATGCATATTGCTGCTGCTATGGAGATAAATAAAAGACTAGTACCAAACTTAAAACAGTTGCATACTTCACTACACTCGAAGGTTGACTTTATTTTTTCATTTGGTCTGTTTTGTTTTAAAAAGTAGGCACAACAAAGTGGGAAACTGGGGAATTCAACCTTCCCCTTTAGGGAATTTTGAACACTCTTAAGTGCTGGTCTAACTCCTTGAATTGGTCAACGGGTATTCGTTTTATATGTACATATATAGTAATATTTACCTATATAAGGGTGTTTGATGAACCACCCTAGCTTATCCCCTCTAAA</gDNA_template>
            <first_frame> K  N  *  F  F  T  Y  S  V  Y  F  K  I  S  I  D  L  I  A  *  R  A  M  A  M  L  V  A  S  R  R  L  S  T  I  I  V  R  Y  S  S  S  S  R  F  C  S  T  S  F  R  E  E  R  D  T  F  G  P  I  L  V  P  D  D  K :   L  W  G  A  Q  T  Q  R  S  L  Q  N  F  E  I  G  G  E  R  E  R  M  P  E  P  I  I  R  A  F  G  I  L  K  K  C  A  A  K  :  V  N  M  E  Y  G  L  D  P  S  I  G  K  A  V  M  Q  A  A  Q  E  V  A  E  G  K  L  N  D  H  F  P  L  V  V  W  Q  T  G  S  G  T  Q  S  N  M  N  A  N  E  :  V  I  A  N  R  A  S  E  I  L  G  H  K  R  G  E  K  H  V  H  P  N  D  H  V  N  R  S  Q  S  S  N  D  T  F  P  T  :  V  M  H  I  A  A  A  M  E  I  N  K  R  L  V  P  N  L  K  Q  L  H  T  S  L  H  S  K  V  D  F  I  F  S  F  G  L  F  C  F  K  K  *  A  Q  Q  S  G  K  L  G  N  S  T  F  P  F  R  E  F  *  T  L  L  S  A  G  L  T  P  *  I  G  Q  R  V  F  V  L  Y  V  H  I  *  *  Y  L  P  I  *  G  C  L  M  N  H  P  S  L  S  P  L   </first_frame>
            <second_frame>  K  T  N  S  L  H  I  Q  F  T  S  K  S  P  L  I  *  S  R  K  E  L  W  R  C  S  *  H  P  V  D  Y  Q  R  L  L  Y  V  I  R  L  P  P  G  F  A  Q  R  L  S  G  R  K  E  I  L  S  V  P  F  S  F  P  T  I   : S  Y  G  G  H  K  P  K  D  P  C  K  T  L  K  L  E  V  S  V  K  E  C  L  N  Q  S  Y  E  H  L  A  F  L  K  S  V  L  P  R :   *  T  W  S  M  A  L  T  H  L  *  G  K  R  *  C  K  L  P  R  K  *  Q  K  E  N  *  M  T  I  F  L  W  W  F  G  R  L  V  V  E  L  K  V  T  *  M  Q  M  R :   L  L  Q  I  E  H  L  K  F  L  A  I  S  V  A  K  S  T  F  T  Q  M  T  T  *  T  D  H  N  L  Q  M  T  H  F  L  L :   *  C  I  L  L  L  L  W  R  *  I  K  D  *  Y  Q  T  *  N  S  C  I  L  H  Y  T  R  R  L  T  L  F  F  H  L  V  C  F  V  L  K  S  R  H  N  K  V  G  N  W  G  I  Q  P  S  P  L  G  N  F  E  H  S  *  V  L  V  *  L  L  E  L  V  N  G  Y  S  F  Y  M  Y  I  Y  S  N  I  Y  L  Y  K  G  V  *  *  T  T  L  A  Y  P  L  *  </second_frame>
            <third_frame>   K  L  I  L  Y  I  F  S  L  L  Q  N  L  H  *  S  N  R  V  K  S  Y  G  D  A  R  S  I  P  S  I  I  N  D  Y  C  T  L  F  V  F  L  Q  V  L  L  N  V  F  Q  G  G  K  R  Y  F  R  S  H  S  R  S  R  R  *  :  V  M  G  G  T  N  P  K  I  P  A  K  L  *  N  W  R  *  A  *  K  N  A  *  T  N  H  T  S  I  W  H  S  *  K  V  C  C  Q   : G  E  H  G  V  W  P  *  P  I  Y  R  E  S  G  D  A  S  C  P  G  S  S  R  R  K  I  E  *  P  F  S  F  G  G  L  A  D  W  *  W  N  S  K  *  H  E  C  K  *   : G  Y  C  K  *  S  I  *  N  S  W  P  *  A  W  R  K  A  R  S  P  K  *  P  R  E  Q  I  T  I  F  K  *  H  I  S  Y   : C  D  A  Y  C  C  C  Y  G  D  K  *  K  T  S  T  K  L  K  T  V  A  Y  F  T  T  L  E  G  *  L  Y  F  F  I  W  S  V  L  F  *  K  V  G  T  T  K  W  E  T  G  E  F  N  L  P  L  *  G  I  L  N  T  L  K  C  W  S  N  S  L  N  W  S  T  G  I  R  F  I  C  T  Y  I  V  I  F  T  Y  I  R  V  F  D  E  P  P  *  L  I  P  S  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0134P07.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30797" stop="30933"/>
                    <exon start="40618" stop="40735"/>
                    <exon start="40858" stop="41007"/>
                    <exon start="42945" stop="43055"/>
                    <exon start="43164" stop="43292"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>642</number_coding_nucleotides>
                  <number_encoded_amino_acids>214</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RAMAMLVASRRLSTIIVRYSSSSRFCSTSFREERDTFGPILVPDDKLWGAQTQRSLQNFEIGGERERMPEPIIRAFGILKKCAAKVNMEYGLDPSIGKAVMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRASEILGHKRGEKHVHPNDHVNRSQSSNDTFPTVMHIAAAMEINKRLVPNLKQLHTSLHSKVDFIFSFGLFCFKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 40 chains have been computed
$ 
$ memory statistics:
$ 10952 bytes spliced alignments in total
$ 5 spliced alignments have been stored
$ 2190 bytes was the average size of a spliced alignment
$ 9184 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2296 bytes was the average size of a predicted gene location
$ 5 megabytes was the average size of the backtrace matrix
$ 51 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 20:59:26
-->
