SW perc perc perc query position in query matching repeat position in repeat score div. del. ins. sequence begin end (left) repeat class/family begin end (left) ID 2893 23.5 4.8 4.9 C06HBa0208D24.1 9 1747 (157251) C Unknown00052 Unknown (0) 5491 3916 1 764 28.4 1.1 1.4 C06HBa0208D24.1 1782 2067 (156931) C Gypsy00139 Gypsy (7661) 2430 2146 2 14807 9.9 1.9 1.1 C06HBa0208D24.1 2147 4474 (154524) C Gypsy00045 Gypsy (2478) 3536 1192 3 * 18282 4.7 0.0 0.0 C06HBa0208D24.1 4471 6782 (152216) + Gypsy00201 Gypsy 646 2956 (3540) 4 235 23.7 0.0 0.0 C06HBa0208D24.1 7921 7979 (151019) C Gypsy00080 Gypsy (7432) 2514 2456 5 741 26.7 5.1 2.6 C06HBa0208D24.1 8437 8786 (150212) C Unknown00002 Unknown (440) 9311 1515 6 675 24.5 3.6 3.7 C06HBa0208D24.1 9695 10094 (148904) C Unknown00052 Unknown (1788) 8193 853 7 32849 6.3 2.4 1.7 C06HBa0208D24.1 10551 15845 (143153) C Gypsy00078 Gypsy (2661) 5037 50 8 7483 15.8 1.1 0.5 C06HBa0208D24.1 15955 17280 (141718) C Copia00194 Copia (205) 10057 8725 9 32098 9.9 1.0 3.5 C06HBa0208D24.1 17284 22444 (136554) + Gypsy00073 Gypsy 6812 11846 (238) 10 6389 20.4 5.8 6.9 C06HBa0208D24.1 22445 24903 (134095) + Gypsy00059 Gypsy 597 3027 (5434) 11 2986 21.0 1.6 0.2 C06HBa0208D24.1 24911 25674 (133324) C Gypsy00056 Gypsy (5114) 7036 1801 12 228 26.7 0.0 0.0 C06HBa0208D24.1 26147 26206 (132792) C Gypsy00056 Gypsy (7289) 4861 4802 13 240 17.8 0.0 0.0 C06HBa0208D24.1 26156 26200 (132798) + Gypsy00087 Gypsy 5521 5565 (2482) 14 18660 9.6 1.4 2.1 C06HBa0208D24.1 26207 29138 (129860) + Gypsy00045 Gypsy 1693 4603 (1411) 15 327 25.1 17.2 0.0 C06HBa0208D24.1 29844 30006 (128992) C Copia00124 Copia (3241) 2029 1839 16 440 16.9 1.1 1.1 C06HBa0208D24.1 30149 30238 (128760) + Copia00019 Copia 2865 2954 (2293) 17 1632 19.5 0.0 0.0 C06HBa0208D24.1 30267 30574 (128424) + Copia00019 Copia 2929 3236 (2011) 17 227 15.4 0.0 0.0 C06HBa0208D24.1 30690 30728 (128270) + Copia00221 Copia 3355 3393 (383) 18 660 19.5 1.2 10.4 C06HBa0208D24.1 31696 31935 (127063) + Copia00198 Copia 8076 8293 (63) 19 582 29.2 4.8 3.6 C06HBa0208D24.1 32115 32423 (126575) + Copia00110 Copia 12481 12793 (1339) 20 324 33.3 9.1 0.9 C06HBa0208D24.1 32487 32707 (126291) + Copia00012 Copia 2466 2704 (2300) 21 2021 19.5 7.8 5.2 C06HBa0208D24.1 33272 33785 (125213) + Copia00019 Copia 2865 3391 (1856) 22 310 28.0 1.3 1.3 C06HBa0208D24.1 33783 33858 (125140) + Copia00019 Copia 4497 4572 (675) 23 * 540 18.0 1.5 2.3 C06HBa0208D24.1 34788 34918 (124080) + Copia00198 Copia 2938 3067 (5289) 24 1014 27.2 6.3 7.8 C06HBa0208D24.1 35358 36139 (122859) C Gypsy00194 Gypsy (7660) 1446 677 25 * 3138 21.1 2.3 1.3 C06HBa0208D24.1 35499 36242 (122756) C Copia00153 Copia (1518) 5871 5121 26 8576 17.7 2.6 1.8 C06HBa0208D24.1 36243 38023 (120975) C Gypsy00046 Gypsy (1642) 9429 1292 27 7091 25.2 6.7 4.2 C06HBa0208D24.1 38018 40573 (118425) C Gypsy00058 Gypsy (3157) 4533 1916 28 8129 19.8 2.6 0.8 C06HBa0208D24.1 38031 39811 (119187) + Gypsy00138 Gypsy 486 2298 (2963) 29 12365 13.5 4.3 2.4 C06HBa0208D24.1 40573 42851 (116147) C Gypsy00073 Gypsy (238) 11846 9525 30 247 27.4 1.6 0.0 C06HBa0208D24.1 43000 43061 (115937) C Copia00019 Copia (668) 4579 4517 31 466 21.7 18.7 1.9 C06HBa0208D24.1 43080 43234 (115764) C Copia00198 Copia (2104) 6252 6072 32 1675 15.3 0.0 0.0 C06HBa0208D24.1 43324 43591 (115407) C Copia00019 Copia (2051) 3196 2929 33 348 33.0 7.1 0.9 C06HBa0208D24.1 44236 44461 (114537) C Copia00012 Copia (2302) 2702 2463 34 2094 17.9 8.8 1.5 C06HBa0208D24.1 45206 45731 (113267) C Copia00198 Copia (4855) 3501 2938 35 232 12.5 0.0 0.0 C06HBa0208D24.1 46114 46161 (112837) C Unknown00037 Unknown (296) 4543 4496 36 573 29.3 3.9 3.9 C06HBa0208D24.1 46421 46953 (112045) C RBTVL_I Unknown (4577) 1372 840 37 10865 11.9 3.0 2.0 C06HBa0208D24.1 48158 49982 (109016) + Gypsy00069 Gypsy 1693 3535 (2478) 38 366 18.9 4.0 0.0 C06HBa0208D24.1 52357 52430 (106568) + MUDSOLT1 Unknown 30 106 (4236) 39 536 18.4 1.4 11.1 C06HBa0208D24.1 52925 53132 (105866) C Unknown00025 Unknown (5838) 470 283 40 48856 9.3 3.3 0.6 C06HBa0208D24.1 53895 62201 (96797) C Gypsy00050 Gypsy (1) 7033 4 41 53146 0.0 0.0 0.0 C06HBa0208D24.1 55667 61498 (97500) + Gypsy00124 Gypsy 1 5832 (0) 42 7712 17.5 2.9 5.0 C06HBa0208D24.1 60620 62385 (96613) + Unknown00034 Unknown 1939 3666 (5411) 43 * 274 28.9 2.8 2.8 C06HBa0208D24.1 62799 62905 (96093) + Unknown00002 Unknown 9231 9337 (644) 44 347 21.9 10.0 6.9 C06HBa0208D24.1 63016 63246 (95752) + Gypsy00197 Gypsy 8590 8827 (114) 45 245 27.0 1.4 0.0 C06HBa0208D24.1 63353 63426 (95572) + Gypsy00046 Gypsy 10281 10355 (716) 46 * 527 28.6 9.1 5.7 C06HBa0208D24.1 63363 63815 (95183) C Gypsy00086 Gypsy (6922) 561 94 47 317 22.9 2.4 10.0 C06HBa0208D24.1 64325 64494 (94504) + Gypsy00197 Gypsy 942 1098 (7843) 48 283 23.8 13.0 3.8 C06HBa0208D24.1 65171 65301 (93697) C Unknown00038 Unknown (8247) 860 718 49 1396 27.6 3.1 3.1 C06HBa0208D24.1 65588 66162 (92836) + Gypsy00197 Gypsy 3478 4052 (4889) 50 277 28.9 2.8 2.8 C06HBa0208D24.1 66443 66549 (92449) + Unknown00002 Unknown 9231 9337 (644) 51 232 24.7 7.6 8.0 C06HBa0208D24.1 66634 66884 (92114) + Gypsy00121 Gypsy 7018 7267 (1059) 52 427 26.6 8.2 2.9 C06HBa0208D24.1 66966 67209 (91789) + Gypsy00121 Gypsy 7628 7884 (442) 52 * 440 30.3 7.0 2.7 C06HBa0208D24.1 67012 67269 (91729) C Unknown00025 Unknown (1853) 4455 4187 53 * 510 24.9 6.1 3.0 C06HBa0208D24.1 67125 67457 (91541) C Gypsy00140 Gypsy (973) 6054 94 54 7590 31.0 4.2 3.1 C06HBa0208D24.1 67653 71413 (87585) C Gypsy00018 Gypsy (2335) 5614 1811 55 6398 27.7 5.0 4.3 C06HBa0208D24.1 69381 71946 (87052) + Gypsy00139 Gypsy 7147 9730 (361) 56 * 924 28.6 3.6 2.7 C06HBa0208D24.1 71553 72001 (86997) C Gypsy00042 Gypsy (6870) 628 176 57 * 343 21.1 4.7 4.0 C06HBa0208D24.1 72165 72312 (86686) C Gypsy00086 Gypsy (6530) 953 805 58 549 23.5 7.2 3.4 C06HBa0208D24.1 72338 72544 (86454) C Gypsy00038 Gypsy (736) 6982 6768 59 * 662 23.5 8.2 4.2 C06HBa0208D24.1 72377 72731 (86267) + Gypsy00177 Gypsy 4296 4664 (5641) 60 5656 24.6 8.4 6.6 C06HBa0208D24.1 72818 75978 (83020) C Gypsy00091 Gypsy (5328) 3219 1 61 2209 23.2 8.4 3.7 C06HBa0208D24.1 75213 76129 (82869) + Gypsy00018 Gypsy 345 1304 (6645) 62 * 263 30.6 3.1 6.6 C06HBa0208D24.1 76755 76950 (82048) + Gypsy00147 Gypsy 295 483 (7267) 63 329 7.7 1.3 0.0 C06HBa0208D24.1 78111 78188 (80810) C Gypsy00046 Gypsy (6921) 4150 4072 64 228 21.1 1.7 1.7 C06HBa0208D24.1 78711 78768 (80230) + Copia00153 Copia 4798 4855 (2534) 65 13716 23.3 6.7 4.2 C06HBa0208D24.1 79354 83613 (75385) C Unknown00019 Unknown (1) 14632 10270 66 * 33227 17.3 3.1 1.0 C06HBa0208D24.1 81860 93347 (65651) C Gypsy00049 Gypsy (2592) 11938 151 67 375 26.5 0.0 1.0 C06HBa0208D24.1 93825 93927 (65071) C Gypsy00049 Gypsy (92) 14438 14337 68 312 20.2 4.2 2.1 C06HBa0208D24.1 96502 96597 (62401) C Copia00149 Copia (6219) 8264 8167 69 * 70299 5.1 0.4 0.8 C06HBa0208D24.1 96596 107916 (51082) + Gypsy00123 Gypsy 1 7747 (0) 70 1284 22.9 0.6 1.4 C06HBa0208D24.1 107917 108270 (50728) C Unknown00045 Unknown (4170) 354 4 71 850 26.7 6.4 5.1 C06HBa0208D24.1 108131 108837 (50161) C Gypsy00033 Gypsy (4617) 6378 5663 72 * 1723 27.1 3.0 1.1 C06HBa0208D24.1 108831 109360 (49638) C Unknown00045 Unknown (60) 4464 3925 73 2580 25.0 3.6 5.4 C06HBa0208D24.1 109366 110897 (48101) C Unknown00002 Unknown (3870) 1999 1 74 * 5524 24.8 5.1 4.4 C06HBa0208D24.1 110167 112550 (46448) + Unknown00016 Unknown 1 2400 (2581) 75 297 23.2 9.9 7.4 C06HBa0208D24.1 112782 112902 (46096) C Unknown00031 Unknown (3307) 1804 1681 76 * 6833 19.3 2.1 2.9 C06HBa0208D24.1 112797 114473 (44525) + Gypsy00152 Gypsy 4110 5773 (5) 77 * 9773 15.6 2.6 0.8 C06HBa0208D24.1 113219 115134 (43864) C Gypsy00140 Gypsy (0) 7027 5078 78 6523 15.5 3.5 3.8 C06HBa0208D24.1 115148 116524 (42474) C Gypsy00140 Gypsy (2222) 4805 3433 78 255 23.7 0.0 0.0 C06HBa0208D24.1 118005 118063 (40935) C Gypsy00080 Gypsy (7432) 2514 2456 79 844 26.8 5.4 3.4 C06HBa0208D24.1 118436 118870 (40128) C Unknown00002 Unknown (440) 9311 1515 80 457 29.4 5.6 2.1 C06HBa0208D24.1 119714 119998 (39000) + Unknown00016 Unknown 4172 4466 (515) 81 * 745 29.8 1.9 2.6 C06HBa0208D24.1 119779 120286 (38712) C Unknown00052 Unknown (3617) 3398 853 82 11213 12.0 2.9 3.8 C06HBa0208D24.1 120635 122621 (36377) C Gypsy00078 Gypsy (3070) 5037 3070 83 1390 29.0 2.4 3.0 C06HBa0208D24.1 124284 124856 (34142) C Unknown00054 Unknown (3358) 2133 1564 84 1816 25.3 3.2 1.9 C06HBa0208D24.1 124990 125745 (33253) C Unknown00054 Unknown (4099) 1392 627 84 8261 16.5 3.6 1.2 C06HBa0208D24.1 125753 127950 (31048) C Unknown00025 Unknown (770) 5538 3296 85 230 15.6 16.8 3.5 C06HBa0208D24.1 128527 128639 (30359) + Unknown00037 Unknown 4529 4656 (183) 86 1221 18.1 2.9 1.4 C06HBa0208D24.1 129583 129863 (29135) + Gypsy00049 Gypsy 173 457 (14073) 87 * 9878 17.0 0.4 0.5 C06HBa0208D24.1 129859 131593 (27405) C Gypsy00202 Gypsy (3603) 10832 9099 88 2576 15.0 2.6 0.6 C06HBa0208D24.1 133690 134218 (24780) C Unknown00045 Unknown (2558) 1966 1427 89 2129 18.3 1.9 4.3 C06HBa0208D24.1 134153 134716 (24282) C Gypsy00033 Gypsy (3185) 7810 7190 90 * 4928 19.1 1.2 3.9 C06HBa0208D24.1 134606 135726 (23272) C Unknown00045 Unknown (3431) 1093 4 89 2958 26.7 4.3 4.8 C06HBa0208D24.1 135535 136897 (22101) C Gypsy00033 Gypsy (4570) 6425 5071 91 * 228 16.7 2.0 2.0 C06HBa0208D24.1 136908 136956 (22042) C Gypsy00027 Gypsy (251) 7681 7633 92 552 22.0 5.1 2.8 C06HBa0208D24.1 137196 137373 (21625) C Unknown00002 Unknown (3058) 6923 6742 93 772 21.5 1.1 0.0 C06HBa0208D24.1 137467 137652 (21346) C Gypsy00177 Gypsy (5386) 4919 4732 94 * 789 25.6 8.5 6.5 C06HBa0208D24.1 137495 138037 (20961) + Unknown00025 Unknown 3906 4459 (1849) 95 * 1572 22.8 3.8 3.0 C06HBa0208D24.1 137709 138206 (20792) C Gypsy00177 Gypsy (5668) 4637 4136 94 1054 25.7 1.9 2.5 C06HBa0208D24.1 138254 138707 (20291) C Gypsy00177 Gypsy (6140) 4165 3678 94 897 21.0 2.3 1.9 C06HBa0208D24.1 138705 139240 (19758) C Unknown00002 Unknown (4958) 5023 4383 96 * 1492 20.9 5.0 3.0 C06HBa0208D24.1 139247 139645 (19353) C Gypsy00077 Gypsy (211) 5902 5496 97 291 30.7 0.0 0.0 C06HBa0208D24.1 139781 139868 (19130) C Copia00089 Copia (10835) 621 534 98 15000 18.4 3.0 3.3 C06HBa0208D24.1 139882 143598 (15400) + Unknown00044 Unknown 838 4543 (0) 99 2331 17.3 2.7 4.1 C06HBa0208D24.1 143038 143699 (15299) C Unknown00034 Unknown (8392) 685 33 100 * 1340 23.4 3.8 2.1 C06HBa0208D24.1 143833 144279 (14719) + Copia00110 Copia 102 2409 (6017) 101 * 1795 19.0 1.2 3.1 C06HBa0208D24.1 143956 144368 (14630) + Unknown00020 Unknown 3 407 (4798) 102 254 16.2 4.3 2.9 C06HBa0208D24.1 145464 145533 (13465) C Copia00183 Copia (4267) 1320 1250 103 * 3646 19.0 4.0 2.0 C06HBa0208D24.1 145524 146511 (12487) C Copia00183 Copia (4246) 1341 334 104 385 24.5 4.9 2.8 C06HBa0208D24.1 146647 146789 (12209) C Copia00183 Copia (5429) 158 13 104 298 30.6 1.0 0.0 C06HBa0208D24.1 148510 148607 (10391) + ATCOPIA6I Unknown 1359 1457 (3023) 105 229 30.5 3.9 3.9 C06HBa0208D24.1 148849 149056 (9942) + ATCOPI1_I Unknown 1592 1799 (2546) 106 248 22.0 5.7 5.7 C06HBa0208D24.1 149188 149293 (9705) C Copia00215 Copia (2270) 2282 2177 107 321 25.0 0.0 0.0 C06HBa0208D24.1 149352 149427 (9571) C Copia00105 Copia (6822) 2035 1960 108 492 31.9 4.1 3.7 C06HBa0208D24.1 150109 150155 (8843) + SHACOP19_I_MT Unknown 2816 3017 (1559) 109 503 32.9 3.3 3.9 C06HBa0208D24.1 150156 150665 (8333) C Copia00105 Copia (7382) 1475 969 110 492 31.9 4.1 3.7 C06HBa0208D24.1 150666 150843 (8155) + SHACOP19_I_MT Unknown 3018 3793 (783) 109 415 32.5 3.2 1.0 C06HBa0208D24.1 151133 151436 (7562) + ATCOPIA6I Unknown 4002 4329 (173) 111 8672 26.8 4.5 4.4 C06HBa0208D24.1 153172 157296 (1702) + Gypsy00056 Gypsy 227 4440 (7942) 112 326 29.3 1.0 0.0 C06HBa0208D24.1 157216 157314 (1684) C Gypsy00071 Gypsy (473) 12238 12139 113 * 259 18.8 0.0 0.0 C06HBa0208D24.1 157332 157379 (1619) C Unknown00052 Unknown (3653) 1016 969 114 * 401 19.0 2.0 2.0 C06HBa0208D24.1 157371 157472 (1526) C Unknown00054 Unknown (3434) 2057 1956 115 2987 24.4 4.0 3.0 C06HBa0208D24.1 157493 158880 (118) C Unknown00002 Unknown (6686) 3295 1211 116