SW perc perc perc query position in query matching repeat position in repeat score div. del. ins. sequence begin end (left) repeat class/family begin end (left) ID 893 14.7 7.5 9.8 C06SLm0050H06.1 1 347 (124185) C Copia00172 Copia (4675) 1952 1614 1 379 35.3 4.3 4.5 C06SLm0050H06.1 630 1403 (123129) C LINE1I_MT Unknown (777) 2757 1986 2 888 15.9 0.0 0.6 C06SLm0050H06.1 2610 2775 (121757) + Copia00125 Copia 1729 2988 (992) 3 255 26.0 0.0 2.7 C06SLm0050H06.1 2775 2789 (121743) + ATCOPIA70_I Unknown 4309 4381 (160) 4 * 423 8.3 1.7 0.0 C06SLm0050H06.1 2790 2849 (121683) C Copia00133 Copia (4459) 260 200 5 * 518 17.7 15.0 0.0 C06SLm0050H06.1 2817 2929 (121603) + Copia00208 Copia 2712 2841 (39) 6 361 10.9 1.7 2.3 C06SLm0050H06.1 2945 2983 (121549) + STOWAWAY50_OS Unknown 72 1151 (541) 7 268 6.6 0.0 1.6 C06SLm0050H06.1 2984 3045 (121487) + Gypsy00046 Gypsy 4078 4138 (6933) 8 361 10.9 1.7 2.3 C06SLm0050H06.1 3046 3061 (121471) + STOWAWAY50_OS Unknown 1152 1578 (114) 7 1051 25.8 2.1 3.4 C06SLm0050H06.1 3182 3506 (121026) C Unknown00020 Unknown (4884) 321 1 9 532 28.1 4.1 1.4 C06SLm0050H06.1 3352 3571 (120961) C Copia00155 Copia (315) 5187 4962 10 * 252 17.4 0.0 0.0 C06SLm0050H06.1 6743 6788 (117744) + Copia00113 Copia 7229 7274 (5132) 11 445 21.4 1.0 0.0 C06SLm0050H06.1 9131 9228 (115304) + Gypsy00042 Gypsy 5950 6048 (1450) 12 266 32.5 7.1 1.8 C06SLm0050H06.1 9612 9780 (114752) + Unknown00057 Unknown 421 598 (3028) 13 1893 32.1 4.6 5.1 C06SLm0050H06.1 10670 12211 (112321) + Unknown00057 Unknown 463 1996 (1630) 14 2142 31.7 3.3 3.4 C06SLm0050H06.1 12294 13905 (110627) + Unknown00057 Unknown 2109 10589 (180) 14 294 14.3 0.0 0.0 C06SLm0050H06.1 18010 18051 (106481) C GYPSODE1_LTR Unknown (31) 2932 2891 15 1197 25.4 9.4 7.4 C06SLm0050H06.1 18092 18763 (105769) C GYPSODE1_LTR Unknown (31) 2932 2248 16 695 26.4 5.0 0.0 C06SLm0050H06.1 19447 19628 (104904) C GYPSODE1_LTR Unknown (1560) 1403 1213 16 2357 26.3 1.1 1.9 C06SLm0050H06.1 20112 20751 (103781) C GYPSODE1_LTR Unknown (2322) 641 7 16 * 2365 22.1 2.3 1.8 C06SLm0050H06.1 20328 20899 (103633) + Gypsy00034 Gypsy 679 1253 (5752) 17 930 25.7 6.4 4.3 C06SLm0050H06.1 20911 21443 (103089) + Gypsy00077 Gypsy 5258 5801 (312) 18 350 26.2 3.8 1.9 C06SLm0050H06.1 21468 21572 (102960) + Gypsy00077 Gypsy 3875 3981 (2132) 19 1124 10.8 1.2 0.0 C06SLm0050H06.1 21575 21741 (102791) + Unknown00002 Unknown 4383 4551 (5430) 20 * 70124 3.9 0.4 1.0 C06SLm0050H06.1 21740 31877 (92655) + Gypsy00112 Gypsy 1 7680 (0) 21 6222 11.6 0.9 0.8 C06SLm0050H06.1 30928 31899 (92633) C Unknown00050 Unknown (2322) 3309 2337 22 * 231 30.3 4.8 3.2 C06SLm0050H06.1 31910 32035 (92497) C Gypsy00168 Gypsy (873) 7309 7182 23 * 1024 27.0 2.0 2.9 C06SLm0050H06.1 31941 32474 (92058) + Unknown00002 Unknown 1639 8097 (1884) 24 * 4778 28.1 4.0 3.9 C06SLm0050H06.1 32469 34444 (90088) + Gypsy00077 Gypsy 3979 5956 (157) 25 2929 27.3 6.4 7.0 C06SLm0050H06.1 33244 34941 (89591) + Copia00089 Copia 2 1689 (9767) 26 * 363 18.0 3.4 5.9 C06SLm0050H06.1 34864 34981 (89551) C Unknown00029 Unknown (1054) 4655 4541 27 * 271 24.5 6.5 4.2 C06SLm0050H06.1 34982 35080 (89452) + Gypsy00155 Gypsy 6027 6248 (401) 28 264 16.3 0.0 2.0 C06SLm0050H06.1 35562 35611 (88921) C Gypsy00046 Gypsy (8245) 2826 2778 29 * 536 26.8 11.2 8.5 C06SLm0050H06.1 35568 36130 (88402) + Gypsy00155 Gypsy 3 580 (6069) 30 271 24.0 5.8 2.9 C06SLm0050H06.1 36061 36163 (88369) C Gypsy00208 Gypsy (3328) 4727 4622 31 * 728 27.3 5.8 9.4 C06SLm0050H06.1 36336 36423 (88109) C Unknown00052 Unknown (3923) 3233 2882 32 389 19.1 0.0 0.0 C06SLm0050H06.1 36424 36491 (88041) + Gypsy00038 Gypsy 5214 5281 (2437) 33 728 27.3 5.8 9.4 C06SLm0050H06.1 36492 37201 (87331) C Unknown00052 Unknown (4275) 2881 19 32 475 28.3 4.8 4.1 C06SLm0050H06.1 37247 37685 (86847) + Unknown00016 Unknown 42 483 (4498) 34 844 23.2 2.2 3.6 C06SLm0050H06.1 37999 38275 (86257) + Gypsy00197 Gypsy 8313 8585 (356) 35 * 5239 24.6 5.8 4.9 C06SLm0050H06.1 38020 40597 (83935) C Gypsy00038 Gypsy (126) 7592 620 36 1529 19.4 4.0 0.6 C06SLm0050H06.1 40585 40906 (83626) C Gypsy00038 Gypsy (2425) 5293 4961 36 * 1601 23.5 5.4 6.9 C06SLm0050H06.1 40966 42177 (82355) + Unknown00016 Unknown 1021 2343 (2638) 34 391 22.4 3.9 2.3 C06SLm0050H06.1 42090 42217 (82315) C Gypsy00197 Gypsy (497) 8444 8315 37 * 2985 28.0 4.0 2.2 C06SLm0050H06.1 42237 43204 (81328) + Gypsy00077 Gypsy 367 1352 (4761) 38 830 17.5 0.6 0.6 C06SLm0050H06.1 43222 43393 (81139) C Gypsy00071 Gypsy (11554) 1157 986 39 * 6708 28.0 2.3 1.7 C06SLm0050H06.1 43388 46421 (78111) + Gypsy00077 Gypsy 2088 4989 (1124) 38 238 22.2 1.9 0.0 C06SLm0050H06.1 48246 48299 (76233) + Gypsy00033 Gypsy 7224 7278 (3717) 40 226 22.5 4.2 0.0 C06SLm0050H06.1 48616 48686 (75846) + Gypsy00086 Gypsy 707 780 (6703) 41 354 30.2 9.8 4.8 C06SLm0050H06.1 49162 49477 (75055) C Gypsy00172 Gypsy (825) 5088 4757 42 * 825 23.8 7.0 5.8 C06SLm0050H06.1 49201 49629 (74903) + Gypsy00042 Gypsy 215 648 (6850) 43 3014 25.3 5.2 4.4 C06SLm0050H06.1 49706 51165 (73367) + Gypsy00033 Gypsy 5071 6609 (4386) 44 * 8354 21.7 4.2 4.5 C06SLm0050H06.1 51162 53632 (70900) + Unknown00045 Unknown 681 3143 (1381) 45 892 34.7 4.5 3.0 C06SLm0050H06.1 52935 53714 (70818) C Gypsy00121 Gypsy (1921) 6405 5614 46 * 395 26.3 1.6 5.6 C06SLm0050H06.1 53666 53790 (70742) + Unknown00045 Unknown 3136 3255 (1269) 45 * 9332 23.1 2.4 1.4 C06SLm0050H06.1 53790 56341 (68191) + Unknown00038 Unknown 846 3422 (5685) 47 7949 19.7 2.2 1.7 C06SLm0050H06.1 54719 56808 (67724) + Gypsy00142 Gypsy 1 1892 (6173) 48 * 3794 24.4 3.2 4.4 C06SLm0050H06.1 56796 58122 (66410) + Unknown00045 Unknown 3206 4516 (8) 49 * 4254 22.0 4.4 3.7 C06SLm0050H06.1 57544 58688 (65844) + Gypsy00033 Gypsy 36 6997 (3998) 50 4088 20.2 2.1 3.0 C06SLm0050H06.1 58689 59686 (64846) + Unknown00045 Unknown 4 992 (3532) 51 4254 22.0 4.4 3.7 C06SLm0050H06.1 59687 59734 (64798) + Gypsy00033 Gypsy 6998 7284 (3711) 50 479 25.0 4.3 1.1 C06SLm0050H06.1 59955 60140 (64392) + Unknown00045 Unknown 1107 1298 (3226) 52 1689 23.7 3.3 2.5 C06SLm0050H06.1 60172 60804 (63728) + Unknown00045 Unknown 1406 2043 (2481) 52 407 34.3 3.7 3.7 C06SLm0050H06.1 60805 60874 (63658) + Gypsy00042 Gypsy 776 1264 (6233) 53 845 33.3 1.4 1.2 C06SLm0050H06.1 60875 61293 (63239) C Unknown00056 Unknown (490) 4619 4200 54 3371 20.8 2.3 2.5 C06SLm0050H06.1 61295 62172 (62360) C Gypsy00139 Gypsy (2946) 7145 6270 55 1854 29.4 8.6 7.7 C06SLm0050H06.1 61783 62186 (62346) + Gypsy00154 Gypsy 229 667 (8683) 56 * 297 18.6 1.0 2.0 C06SLm0050H06.1 62187 62375 (62157) + HELMET3 Unknown 1466 3772 (2801) 57 253 13.0 4.1 5.5 C06SLm0050H06.1 62314 62386 (62146) C Copia00089 Copia (5826) 5630 5559 58 * 233 20.7 1.2 4.7 C06SLm0050H06.1 62387 62398 (62134) C ATENSPM10 Unknown (7105) 1166 1085 59 1854 29.4 8.6 7.7 C06SLm0050H06.1 62399 64686 (59846) + Gypsy00154 Gypsy 668 3157 (6193) 56 * 3059 29.7 5.6 7.0 C06SLm0050H06.1 62838 66358 (58174) C Gypsy00139 Gypsy (534) 7513 2233 60 229 32.4 6.4 4.4 C06SLm0050H06.1 66442 66690 (57842) C Gypsy00139 Gypsy (7983) 2108 1855 60 416 27.6 4.9 3.4 C06SLm0050H06.1 67069 67334 (57198) C Gypsy00139 Gypsy (8644) 1447 1178 60 971 26.3 4.9 3.6 C06SLm0050H06.1 67614 68058 (56474) + Gypsy00056 Gypsy 6169 6619 (5531) 61 * 2051 26.6 0.8 0.2 C06SLm0050H06.1 68051 68573 (55959) C Gypsy00118 Gypsy (5245) 1162 637 62 * 7679 9.5 2.5 1.1 C06SLm0050H06.1 68571 70249 (54283) C Gypsy00154 Gypsy (190) 5777 1 63 3532 25.8 3.4 1.0 C06SLm0050H06.1 70232 71215 (53317) + Gypsy00190 Gypsy 7336 8342 (4040) 64 * 3092 25.8 0.7 2.6 C06SLm0050H06.1 71217 72134 (52398) C Gypsy00066 Gypsy (7765) 4543 3644 65 2974 19.3 3.5 3.2 C06SLm0050H06.1 72104 72911 (51621) + Unknown00002 Unknown 4382 5191 (4790) 66 * 882 22.4 0.8 3.5 C06SLm0050H06.1 72901 73154 (51378) + Unknown00002 Unknown 5536 5782 (4199) 66 * 6670 3.1 0.0 0.1 C06SLm0050H06.1 73261 74053 (50479) C Gypsy00120 Gypsy (213) 6155 5364 67 3447 23.3 3.9 3.5 C06SLm0050H06.1 74063 76219 (48313) + Copia00205 Copia 471 2668 (7588) 68 616 16.9 1.7 0.8 C06SLm0050H06.1 76228 76346 (48186) + Unknown00034 Unknown 1928 2047 (7030) 69 * 48022 9.6 1.5 1.6 C06SLm0050H06.1 76240 83380 (41152) C Gypsy00014 Gypsy (2) 6920 1 70 * 49950 9.9 1.8 2.2 C06SLm0050H06.1 76413 85347 (39185) + Gypsy00002 Gypsy 1 11850 (4) 71 569 24.9 9.2 1.9 C06SLm0050H06.1 85767 86028 (38504) + Copia00205 Copia 2686 2966 (7290) 68 1916 25.2 4.2 3.1 C06SLm0050H06.1 86056 86801 (37731) + Copia00205 Copia 3031 3784 (6472) 68 10615 10.7 2.3 0.5 C06SLm0050H06.1 86857 88471 (36061) + Copia00205 Copia 4060 5703 (4553) 72 6571 15.6 11.2 4.5 C06SLm0050H06.1 87299 88844 (35688) C Copia00191 Copia (425) 4301 2652 73 * 249 25.7 2.6 0.9 C06SLm0050H06.1 89442 89555 (34977) C Gypsy00161 Gypsy (73) 6993 6878 74 345 6.5 2.1 4.2 C06SLm0050H06.1 91896 91991 (32541) + Gypsy00046 Gypsy 4069 4162 (6909) 75 292 6.0 1.2 0.0 C06SLm0050H06.1 91921 92004 (32528) C Gypsy00046 Gypsy (6915) 4156 4072 75 * 259 9.3 1.3 2.6 C06SLm0050H06.1 91941 92017 (32515) C Copia00089 Copia (5834) 5622 5547 76 * 55199 12.0 2.1 2.7 C06SLm0050H06.1 93372 102371 (22161) C Gypsy00073 Gypsy (236) 11848 2896 77 241 20.3 0.0 0.0 C06SLm0050H06.1 103774 103832 (20700) C Copia00110 Copia (11357) 2775 2717 78 * 518 21.2 2.9 1.4 C06SLm0050H06.1 103790 103928 (20604) + Unknown00040 Unknown 4372 4512 (170) 79 269 13.5 3.9 0.0 C06SLm0050H06.1 103919 103970 (20562) C Unknown00020 Unknown (4832) 373 320 80 * 928 24.8 1.8 7.0 C06SLm0050H06.1 103935 104263 (20269) + Unknown00040 Unknown 4370 4681 (1) 81 * 1149 24.4 2.5 3.3 C06SLm0050H06.1 103985 104344 (20188) C Unknown00020 Unknown (4846) 359 3 82 891 24.9 4.6 9.6 C06SLm0050H06.1 104004 104522 (20010) C Copia00110 Copia (11721) 2411 1919 83 * 880 32.8 3.5 3.3 C06SLm0050H06.1 106735 107343 (17189) C Unknown00043 Unknown (822) 10502 2066 84 433 34.1 2.7 4.4 C06SLm0050H06.1 107676 108154 (16378) C Unknown00043 Unknown (1488) 9836 9366 85 231 27.0 5.6 3.5 C06SLm0050H06.1 108647 108788 (15744) C Unknown00057 Unknown (2705) 921 777 86 272 21.7 0.0 0.0 C06SLm0050H06.1 108827 108895 (15637) C Gypsy00042 Gypsy (1448) 6050 5982 87 984 33.1 3.1 2.0 C06SLm0050H06.1 112470 113014 (11518) + Unknown00057 Unknown 472 1022 (2604) 88 528 23.4 0.0 0.0 C06SLm0050H06.1 113880 114003 (10529) C SHATAG_MT Unknown (1132) 2750 2627 89 312 31.5 1.4 0.0 C06SLm0050H06.1 114922 115064 (9468) C SHATAG_MT Unknown (2103) 1779 1635 90 1014 30.7 2.7 2.6 C06SLm0050H06.1 116880 117505 (7027) + Unknown00043 Unknown 1398 9949 (1375) 91 1142 32.9 1.5 1.2 C06SLm0050H06.1 117547 118065 (6467) + Unknown00043 Unknown 9979 10499 (825) 91 839 31.3 3.6 4.2 C06SLm0050H06.1 118474 119026 (5506) + Unknown00057 Unknown 2825 3374 (252) 92 566 16.9 0.0 6.7 C06SLm0050H06.1 121076 121240 (3292) C Unknown00025 Unknown (5850) 458 305 93 247 26.6 5.3 3.8 C06SLm0050H06.1 123243 123375 (1157) C Unknown00057 Unknown (3021) 605 471 94