GeneSeqer. Version of March 12, 2006. Date run: Tue Aug 29 00:19:04 2006 (Bayesian) Splice site model (species): Arabidopsis thaliana Fast search parameters: MinMatchLen 16, MinQualityHSP 30, MinQualityCHAIN 50. Total number of ESTs: 175665 Total sequence length: 93213537 Minimum sequence length: 89 Maximum sequence length: 1082 Length distribution (number of sequences of specified length): < 100: 1 < 200: 2188 < 300: 8544 < 400: 20465 < 500: 39499 < 600: 49432 < 700: 32872 < 800: 19308 < 900: 3155 < 1000: 193 >=1000: 8 Input file : /tmp/bac-submission-temp-PEWtl/C09HBa0033H16/C09HBa0033H16.seq.screen ________________________________________________________________________________ Sequence 1: C09HBa0033H16.1, from 1 to 31276, both strands analyzed. ... started at: Tue Aug 29 00:44:40 2006 EST library file: /tmp/cxgn-bacpublish-resources-UjDeln/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 5 ... matches indexed, elapsed seconds = 5 HitsTableSize = 30 EST library file: /tmp/cxgn-bacpublish-resources-UjDeln/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 7 ... matches indexed, elapsed seconds = 7 HitsTableSize = 19 ******************************************************************************** EST sequence 7 -strand 447 n (File: SGN-E551553-) 1 TTTTTTAAAA ACGCCCCCCC GAAATTTATT AAACCCCCCC CAAGGGGGGA AGGGGGCCCC 61 CCCCCCCCCC CCCCATTTTT TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT 121 TTTTTTTTTT TTTTTTTTTT TTTTGAGCAA CTACTGAACT TTCATCGAGA GTTTCCAGTG 181 CCACGAATGG GCAAAATATG CTGAGACTTG AACCACATTT GAACAAACAC CTAAATGCAG 241 TAGTAATTTA TATACTTGTA TATAAAAATA GGAATTTAAC TTCTCTTGTT TTATGTACAA 301 CCATGTTCCC TGCTACATCT AGCGGTCAAA AGGAAATTCT GAGTCATTCT CGGTCACTTG 361 GAAGGGCTGA GGATGCTGGC CGGAGCAATA GAGATTCCAC ATCTTAAAGT AAGAACGTTC 421 CAGATTCCTC ACCCAACGTG TTGTATC Predicted gene structure (within gDNA segment 2554 to 1): Exon 1 806 767 ( 40 n); cDNA 107 146 ( 40 n); score: 0.675 Intron 1 766 341 ( 426 n); Pd: 0.000 (s: 0.68), Pa: 0.000 (s: 0.92) Exon 2 340 202 ( 139 n); cDNA 147 287 ( 141 n); score: 0.906 MATCH C09HBa0033H16.1- SGN-E551553- 0.906 179 0.400 C PGS_C09HBa0033H16.1-_SGN-E551553- (806 767,340 202) Alignment (genomic DNA sequence = upper lines): TTTAATTTGT AGCCTTTTTA TTTTTTTTAA CCTATTTTGA GTTCTCTTGT GTACTATGTG 747 ||| ||| | ||||| |||||||| | |||||| TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT TTTTTTTTGA .......... .......... 146 ATGCAATAAT CAATGAATGA CATATGTATT AGTATGTTAT TATAGATAAA TTATGCTATC 687 .......... .......... .......... .......... .......... .......... 146 TCTAGTTACT ATATCAAATC TCGAAATATT TCATTAATTG ATTCTAGGAA ATATCATCAC 627 .......... .......... .......... .......... .......... .......... 146 CTCCTAATGC AAAGGAGAAG GAAATGAGTA ATATTTAGAC AAAAAAATGA AGGAAACAAA 567 .......... .......... .......... .......... .......... .......... 146 CACAATGTGT TGATATATTA GGGGCATTGG ATGCCTCCAT TAATAATTTA ACAGAAAAAT 507 .......... .......... .......... .......... .......... .......... 146 GTCAAAGACA AGCTGATGAA TAAAGATGCA CAACAATAGG ACTCCTTACA TTTCATTGAC 447 .......... .......... .......... .......... .......... .......... 146 CACCCAATTT TTGAACTTAA CAGCTATCCA TCACCCCTCT CTCACTCTTA TTCTTGTACG 387 .......... .......... .......... .......... .......... .......... 146 TTTTCACATT CAAGCCAAAC AAGACACTGG GTGAGTCTTG TCATTTGCAA CTAATGAACT 327 |||| ||| |||||| .......... .......... .......... .......... ......GCAA CTACTGAACT 160 TCCATCGAGA GTTTCCAGTA GCACGAATGG GCAAAATGTG CTGAGACTTG AACCACATTT 267 | |||||||| ||||||||| ||||||||| ||||||| || |||||||||| |||||||||| TTCATCGAGA GTTTCCAGTG CCACGAATGG GCAAAATATG CTGAGACTTG AACCACATTT 220 GAACAAACAC CTAAATGCAG TAGTAATTTA TATACTTGTA TAT-AAAA-G GGAATTTATG 209 |||||||||| |||||||||| |||||||||| |||||||||| ||| |||| |||||||| GAACAAACAC CTAAATGCAG TAGTAATTTA TATACTTGTA TATAAAAATA GGAATTTAAC 280 TTCTCTT 202 ||||||| TTCTCTT 287 hqPGS_C09HBa0033H16.1-_SGN-E551553- (340 202) ******************************************************************************** EST sequence 44 +strand 619 n (File: SGN-E266236+) 1 ATCCCCAATC TCCAATGGCA AAATCCACAA AAATTCTCTC ATCAATCCTC ATTCTCTTCT 61 TCATTTTCAG TCTATTTTCT TCATCAAACG CATTAGGCGG AAAGCTCGGC GGAAGAACAC 121 AAATCAAAAA CGTGAAAACA AATCAGGAAA TTCAAGATCT AAGTAAGTAC TGTGTCGAAG 181 AACACAACAG AGATTTGCGG CATATCAATG GTGCTTTGAG TTCTTTATTG AGTTTTTCTC 241 AAGTTGTTGA AGCAGAAAAA CAAGTTGTTT CTGGTGTTAA ATATTATCTA AAAATCTCAG 301 CTATTGTTAA ATCATCTAGC TCACCAAAAT TGTTCGATGC TGTTGTTGTT GTTAAAGCTT 361 GGGAGAAGAA GAAAGAATTG CTTACGTTTT CTCCTTCTCC TTCACCGGCT ACAAAGTGAA 421 TTTTCGATGG TTGATAGTGG CTAAAAGTTA AAACTTCTAG TAGTGCTAAT GTTGTTTAAT 481 CTAATTTTGA AGTACTTTAA TTTGTAGCCT TTTTATTTTT TTTAACCTAT TTTGAGTTCT 541 CTTGTGTACT ATGTGATGCA ATAATCAATG AATGACATAT GTATTAGTAT GTTATTATAG 601 ATAAATTAAA AAAAAAAAA Predicted gene structure (within gDNA segment 1901 to 1): Exon 1 1301 694 ( 608 n); cDNA 1 608 ( 608 n); score: 0.997 PPA cDNA 609 619 MATCH C09HBa0033H16.1- SGN-E266236+ 0.997 608 0.982 C PGS_C09HBa0033H16.1-_SGN-E266236+ (1301 694) Alignment (genomic DNA sequence = upper lines): ATCCCCAATC TCCAATGGCA AAATCCACAA AAATTCTCTC ATCAATCCTC ATTCTCTTCT 1242 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCCCAATC TCCAATGGCA AAATCCACAA AAATTCTCTC ATCAATCCTC ATTCTCTTCT 60 TCATTTTCAG TCTATTTTCT TCATCAAACG CATTAGGCGG AAAGCTCGGC GGAAGAACAC 1182 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATTTTCAG TCTATTTTCT TCATCAAACG CATTAGGCGG AAAGCTCGGC GGAAGAACAC 120 AAATCAAAAA CGTGAAAACA AATCAGGAAA TTCAAGATCT AGGTAAGTAC TGTGTCGAAG 1122 |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| AAATCAAAAA CGTGAAAACA AATCAGGAAA TTCAAGATCT AAGTAAGTAC TGTGTCGAAG 180 AACACAACAG AGATTTGCGG CATATCAATG GTGCTTTGAG TTCTTTATTG AGTTTTTCTC 1062 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACACAACAG AGATTTGCGG CATATCAATG GTGCTTTGAG TTCTTTATTG AGTTTTTCTC 240 AAGTTGTTGA AGCAGAAAAA CAAGTTGTTT CTGGTGTTAA ATATTATCTA AAAATCTCAG 1002 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTTGTTGA AGCAGAAAAA CAAGTTGTTT CTGGTGTTAA ATATTATCTA AAAATCTCAG 300 CTATTGTTAA ATCATCTAGC TCACCAAAAT TGTTCGATGC TGTTGTTGTT GTTAAAGCTT 942 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTATTGTTAA ATCATCTAGC TCACCAAAAT TGTTCGATGC TGTTGTTGTT GTTAAAGCTT 360 GGGAGAAGAA GAAGGAATTG CTTACGTTTT CTCCTTCTCC TTCACCGGCT ACAAAGTGAA 882 |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGAGAAGAA GAAAGAATTG CTTACGTTTT CTCCTTCTCC TTCACCGGCT ACAAAGTGAA 420 TTTTCGATGG TTGATAGTGG CTAAAAGTTA AAACTTCTAG TAGTGCTAAT GTTGTTTAAT 822 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCGATGG TTGATAGTGG CTAAAAGTTA AAACTTCTAG TAGTGCTAAT GTTGTTTAAT 480 CTAATTTTGA AGTACTTTAA TTTGTAGCCT TTTTATTTTT TTTAACCTAT TTTGAGTTCT 762 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAATTTTGA AGTACTTTAA TTTGTAGCCT TTTTATTTTT TTTAACCTAT TTTGAGTTCT 540 CTTGTGTACT ATGTGATGCA ATAATCAATG AATGACATAT GTATTAGTAT GTTATTATAG 702 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGTGTACT ATGTGATGCA ATAATCAATG AATGACATAT GTATTAGTAT GTTATTATAG 600 ATAAATTA 694 |||||||| ATAAATTA 608 hqPGS_C09HBa0033H16.1-_SGN-E266236+ (1301 694) ******************************************************************************** EST sequence 32 +strand 620 n (File: SGN-E551559+) 1 AAAATCCCCA ATCTCCAATG GCAAAATCCA CAAAAATTCT CTCATCAATC CTCATTCTCT 61 TCTTCATTTT CAGTCTATTT TCTTCATCAA ACGCATTAGG CGGAAAGCTC GGCGGAAGAA 121 CACAAATCAA AAACGTGAAA ACAAATCAGG AAATTCAAGA TCTAGGTAAG TACTGTGTCG 181 AAGAACACAA CAGAGATTTG CGGCATATCA ATGGTGCTTT GAGTTCTTTA TTGAGTTTTT 241 CTCAAGTTGT TGAAGCAGAA AAACAAGTTG TTTCTGGTGT TAAATATTAT CTAAAAATCT 301 CAGCTATTGT TAAATCATCT AGCTCACCAA AATTGTTCGA TGCTGTTGTT GTTGTTAAAG 361 CTTGGGAGAA GAAGAAGGAA TTGCTTACGT TTTCTCCTTC TCCTTCACCG GCTACAAAGT 421 GAATTTTCGA TGGTTGATAG TGGCTAAAAG TTAAAACTTC TAGTAGTGCT AATGTTGTTT 481 AATCTAATTT TGAAGTACTT TAATTTGTAG CCTTTTTATT TTTTTTAACC TATTTTGAGT 541 TCTCTTGTGT ACTATGTGAT GCAATAATCA ATGAATGACA TATGTATTAG TATGTTATTA 601 TAGATAAAAA AAAAAAAAAA Predicted gene structure (within gDNA segment 1904 to 1): Exon 1 1304 697 ( 608 n); cDNA 1 608 ( 608 n); score: 1.000 PPA cDNA 609 620 MATCH C09HBa0033H16.1- SGN-E551559+ 1.000 608 0.981 C PGS_C09HBa0033H16.1-_SGN-E551559+ (1304 697) Alignment (genomic DNA sequence = upper lines): AAAATCCCCA ATCTCCAATG GCAAAATCCA CAAAAATTCT CTCATCAATC CTCATTCTCT 1245 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATCCCCA ATCTCCAATG GCAAAATCCA CAAAAATTCT CTCATCAATC CTCATTCTCT 60 TCTTCATTTT CAGTCTATTT TCTTCATCAA ACGCATTAGG CGGAAAGCTC GGCGGAAGAA 1185 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTCATTTT CAGTCTATTT TCTTCATCAA ACGCATTAGG CGGAAAGCTC GGCGGAAGAA 120 CACAAATCAA AAACGTGAAA ACAAATCAGG AAATTCAAGA TCTAGGTAAG TACTGTGTCG 1125 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACAAATCAA AAACGTGAAA ACAAATCAGG AAATTCAAGA TCTAGGTAAG TACTGTGTCG 180 AAGAACACAA CAGAGATTTG CGGCATATCA ATGGTGCTTT GAGTTCTTTA TTGAGTTTTT 1065 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAACACAA CAGAGATTTG CGGCATATCA ATGGTGCTTT GAGTTCTTTA TTGAGTTTTT 240 CTCAAGTTGT TGAAGCAGAA AAACAAGTTG TTTCTGGTGT TAAATATTAT CTAAAAATCT 1005 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCAAGTTGT TGAAGCAGAA AAACAAGTTG TTTCTGGTGT TAAATATTAT CTAAAAATCT 300 CAGCTATTGT TAAATCATCT AGCTCACCAA AATTGTTCGA TGCTGTTGTT GTTGTTAAAG 945 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCTATTGT TAAATCATCT AGCTCACCAA AATTGTTCGA TGCTGTTGTT GTTGTTAAAG 360 CTTGGGAGAA GAAGAAGGAA TTGCTTACGT TTTCTCCTTC TCCTTCACCG GCTACAAAGT 885 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGGGAGAA GAAGAAGGAA TTGCTTACGT TTTCTCCTTC TCCTTCACCG GCTACAAAGT 420 GAATTTTCGA TGGTTGATAG TGGCTAAAAG TTAAAACTTC TAGTAGTGCT AATGTTGTTT 825 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATTTTCGA TGGTTGATAG TGGCTAAAAG TTAAAACTTC TAGTAGTGCT AATGTTGTTT 480 AATCTAATTT TGAAGTACTT TAATTTGTAG CCTTTTTATT TTTTTTAACC TATTTTGAGT 765 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCTAATTT TGAAGTACTT TAATTTGTAG CCTTTTTATT TTTTTTAACC TATTTTGAGT 540 TCTCTTGTGT ACTATGTGAT GCAATAATCA ATGAATGACA TATGTATTAG TATGTTATTA 705 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCTTGTGT ACTATGTGAT GCAATAATCA ATGAATGACA TATGTATTAG TATGTTATTA 600 TAGATAAA 697 |||||||| TAGATAAA 608 hqPGS_C09HBa0033H16.1-_SGN-E551559+ (1304 697) ******************************************************************************** EST sequence 35 +strand 619 n (File: SGN-E553752+) 1 AAAATCCCCA ATCTCCAATG GCAAAATCCA CAAAAATTCT CTCATCAATC CTCATTCTCT 61 TCTTCATTTT CAGTCTATTT TCTTCATCAA ACGCATTAAG CGGAAAGCTC GGCGGAAGAA 121 CACAAATCAA AAACGTGAAA ACAAATCAGG AAATTCAAGA TCTAGGTAAG TACTGTGTCG 181 AAGAACACAA CAGAGATTTG CGGCATATCA ATGGTGCTTT GAGTTCTTTA TTGAGTTTTT 241 CTCAAGTTGT TGAAGCAGAA AAACAAGTTG TTTCTGGTGT TAAATATTAT CTAAAAATCT 301 CAGCTATTGT TAAATCATCT AGCTCACCAA AATTGTTCGA TGCTGTTGTT GTTGTTAAAG 361 CTTGGGAGAA GAAGAAGGAA TTGCTTACGT TTTCTCCTTC TCCTTCACCG GCTACAAAGT 421 GAATTTTCGA TGGTTGATAG TGGCTAAAAG TTAAAACTTC TAGTAGTGCT AATGTTGTTT 481 AATCTAATTT TGAAGTACTT TAATTTGTAG CCTTTTTATT TTTTTTAACC TATTTTGAGT 541 TCTCTTGTGT ACTATGTGAT GCAATAATCA ATGAATGACA TATGTATTAG TATGTTATTA 601 TAGATAAAAA AAAGAAAAT Predicted gene structure (within gDNA segment 1904 to 1): Exon 1 1304 697 ( 608 n); cDNA 1 608 ( 608 n); score: 0.998 MATCH C09HBa0033H16.1- SGN-E553752+ 0.998 608 0.982 C PGS_C09HBa0033H16.1-_SGN-E553752+ (1304 697) Alignment (genomic DNA sequence = upper lines): AAAATCCCCA ATCTCCAATG GCAAAATCCA CAAAAATTCT CTCATCAATC CTCATTCTCT 1245 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATCCCCA ATCTCCAATG GCAAAATCCA CAAAAATTCT CTCATCAATC CTCATTCTCT 60 TCTTCATTTT CAGTCTATTT TCTTCATCAA ACGCATTAGG CGGAAAGCTC GGCGGAAGAA 1185 |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| TCTTCATTTT CAGTCTATTT TCTTCATCAA ACGCATTAAG CGGAAAGCTC GGCGGAAGAA 120 CACAAATCAA AAACGTGAAA ACAAATCAGG AAATTCAAGA TCTAGGTAAG TACTGTGTCG 1125 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACAAATCAA AAACGTGAAA ACAAATCAGG AAATTCAAGA TCTAGGTAAG TACTGTGTCG 180 AAGAACACAA CAGAGATTTG CGGCATATCA ATGGTGCTTT GAGTTCTTTA TTGAGTTTTT 1065 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAACACAA CAGAGATTTG CGGCATATCA ATGGTGCTTT GAGTTCTTTA TTGAGTTTTT 240 CTCAAGTTGT TGAAGCAGAA AAACAAGTTG TTTCTGGTGT TAAATATTAT CTAAAAATCT 1005 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCAAGTTGT TGAAGCAGAA AAACAAGTTG TTTCTGGTGT TAAATATTAT CTAAAAATCT 300 CAGCTATTGT TAAATCATCT AGCTCACCAA AATTGTTCGA TGCTGTTGTT GTTGTTAAAG 945 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCTATTGT TAAATCATCT AGCTCACCAA AATTGTTCGA TGCTGTTGTT GTTGTTAAAG 360 CTTGGGAGAA GAAGAAGGAA TTGCTTACGT TTTCTCCTTC TCCTTCACCG GCTACAAAGT 885 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGGGAGAA GAAGAAGGAA TTGCTTACGT TTTCTCCTTC TCCTTCACCG GCTACAAAGT 420 GAATTTTCGA TGGTTGATAG TGGCTAAAAG TTAAAACTTC TAGTAGTGCT AATGTTGTTT 825 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATTTTCGA TGGTTGATAG TGGCTAAAAG TTAAAACTTC TAGTAGTGCT AATGTTGTTT 480 AATCTAATTT TGAAGTACTT TAATTTGTAG CCTTTTTATT TTTTTTAACC TATTTTGAGT 765 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCTAATTT TGAAGTACTT TAATTTGTAG CCTTTTTATT TTTTTTAACC TATTTTGAGT 540 TCTCTTGTGT ACTATGTGAT GCAATAATCA ATGAATGACA TATGTATTAG TATGTTATTA 705 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCTTGTGT ACTATGTGAT GCAATAATCA ATGAATGACA TATGTATTAG TATGTTATTA 600 TAGATAAA 697 |||||||| TAGATAAA 608 hqPGS_C09HBa0033H16.1-_SGN-E553752+ (1304 697) ******************************************************************************** EST sequence 37 +strand 615 n (File: SGN-E352697+) 1 ATCCCCAATC TCCAATGGCA AAATCCACAA AAATTCTCTC ATCAATCCTC ATTCTCTTCT 61 TCATTTTCAG TCTATTTTCT TCATCAAACG CATTAGGCGG AAAGCTCGGC GGAAGAACAC 121 AAATCAAAAA CGTGAAAACA AATCAGGAAA TTCAAGATCT AGGTAAGTAC TGTGTCGAAG 181 AACACAACAG AGATTTGCGG CATATCAATG GTGCTTTGAG TTCTTTATTG AGTTTTTCTC 241 AAGTTGTTGA AGCAGAAAAA CAAGTTGTTT CTGGTGTTAA ATATTATCTA AAAATCTCAG 301 CTATTGTTAA ATCATCTAGC TCACCAAAAT TGTTCGATGC TGTTGTTGTT GTTAAAGCTT 361 GGGAGAAGAA GAAGGAATTG CTTACGTTTT CTCCTTCTCC TTCACCGGCT ACAAAGTGAA 421 TTTTCGATGG TTGATAGTGG CTAAAAGTTA AAACTTCTAG TAGTGCTAAT GTTGTTTAAT 481 CTAATTTTGA AGTACTTTAA TTTGTAGCCT TTTTATTTTT TTTAACCTAT TTTGAGTTCT 541 CTTGTGTACT ATGTGATGCA ATAATCAATG AATGACATAT GTATTAGTAT GTTATTATAG 601 ATAAAAAAAA AAAAA Predicted gene structure (within gDNA segment 1901 to 1): Exon 1 1301 697 ( 605 n); cDNA 1 605 ( 605 n); score: 1.000 PPA cDNA 606 615 MATCH C09HBa0033H16.1- SGN-E352697+ 1.000 605 0.984 C PGS_C09HBa0033H16.1-_SGN-E352697+ (1301 697) Alignment (genomic DNA sequence = upper lines): ATCCCCAATC TCCAATGGCA AAATCCACAA AAATTCTCTC ATCAATCCTC ATTCTCTTCT 1242 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCCCAATC TCCAATGGCA AAATCCACAA AAATTCTCTC ATCAATCCTC ATTCTCTTCT 60 TCATTTTCAG TCTATTTTCT TCATCAAACG CATTAGGCGG AAAGCTCGGC GGAAGAACAC 1182 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATTTTCAG TCTATTTTCT TCATCAAACG CATTAGGCGG AAAGCTCGGC GGAAGAACAC 120 AAATCAAAAA CGTGAAAACA AATCAGGAAA TTCAAGATCT AGGTAAGTAC TGTGTCGAAG 1122 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATCAAAAA CGTGAAAACA AATCAGGAAA TTCAAGATCT AGGTAAGTAC TGTGTCGAAG 180 AACACAACAG AGATTTGCGG CATATCAATG GTGCTTTGAG TTCTTTATTG AGTTTTTCTC 1062 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACACAACAG AGATTTGCGG CATATCAATG GTGCTTTGAG TTCTTTATTG AGTTTTTCTC 240 AAGTTGTTGA AGCAGAAAAA CAAGTTGTTT CTGGTGTTAA ATATTATCTA AAAATCTCAG 1002 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTTGTTGA AGCAGAAAAA CAAGTTGTTT CTGGTGTTAA ATATTATCTA AAAATCTCAG 300 CTATTGTTAA ATCATCTAGC TCACCAAAAT TGTTCGATGC TGTTGTTGTT GTTAAAGCTT 942 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTATTGTTAA ATCATCTAGC TCACCAAAAT TGTTCGATGC TGTTGTTGTT GTTAAAGCTT 360 GGGAGAAGAA GAAGGAATTG CTTACGTTTT CTCCTTCTCC TTCACCGGCT ACAAAGTGAA 882 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGAGAAGAA GAAGGAATTG CTTACGTTTT CTCCTTCTCC TTCACCGGCT ACAAAGTGAA 420 TTTTCGATGG TTGATAGTGG CTAAAAGTTA AAACTTCTAG TAGTGCTAAT GTTGTTTAAT 822 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCGATGG TTGATAGTGG CTAAAAGTTA AAACTTCTAG TAGTGCTAAT GTTGTTTAAT 480 CTAATTTTGA AGTACTTTAA TTTGTAGCCT TTTTATTTTT TTTAACCTAT TTTGAGTTCT 762 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAATTTTGA AGTACTTTAA TTTGTAGCCT TTTTATTTTT TTTAACCTAT TTTGAGTTCT 540 CTTGTGTACT ATGTGATGCA ATAATCAATG AATGACATAT GTATTAGTAT GTTATTATAG 702 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGTGTACT ATGTGATGCA ATAATCAATG AATGACATAT GTATTAGTAT GTTATTATAG 600 ATAAA 697 ||||| ATAAA 605 hqPGS_C09HBa0033H16.1-_SGN-E352697+ (1301 697) ******************************************************************************** EST sequence 33 +strand 535 n (File: SGN-E552461+) 1 CCATGATCCA AACTGCTATG TGTCTTCATG ATTCTGAACT CTTTATGTCT TAAGTAGATG 61 AATGCTGTAA TATGGATCTA TCTTTGGTGC TGTTTCTAAA CTCGAATATC CGTTTTATGC 121 GACTCTTTTT CTTTTTGAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA 181 AAAAAAAAGG GGGGGGGGCC GAAAACAAAA TCCCCCCTAT GGGGGGGGGG GTAAATTTTA 241 CGGGGCTTTT TTTTAAAAAA AAAAAAAAAA TTAAAGCGGG GGAGATTAAA AAAAAAATGA 301 TTACGTTTTC TCCTTCTCCT TCACCGGCTA CAAAGTGAAT TTTCGATGGT TGATAGTGGC 361 TAAAAGTTAA AACTTCTAGT AGTGCTAATG TTGTTTAATC TAATTTTGAA GTACTTTAAT 421 TTGTAGCCTT TTTATTTTTT TTAACCTATT TTGAGTTCTC TTGTGTACTA TGTGATGCAA 481 TAATCAATGA ATGACATATG TATTAGTATG TTATTATAGA TAAAAAAAAA AAAAA Predicted gene structure (within gDNA segment 4520 to 1): Exon 1 3634 3626 ( 9 n); cDNA 246 254 ( 9 n); score: 0.889 Intron 1 3625 1318 (2308 n); Pd: 0.911 (s: 0), Pa: 0.000 (s: 0) Exon 2 1317 1302 ( 16 n); cDNA 255 270 ( 16 n); score: 0.938 Intron 2 1301 951 ( 351 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.82) Exon 3 950 697 ( 254 n); cDNA 271 524 ( 254 n); score: 0.965 PPA cDNA 525 535 MATCH C09HBa0033H16.1- SGN-E552461+ 0.965 279 0.521 C PGS_C09HBa0033H16.1-_SGN-E552461+ (3634 3626,1317 1302,950 697) Alignment (genomic DNA sequence = upper lines): CTTTTTTTCG TACTATTACA AATATGAAAA TAATGATCAA AATTGAATTC AATTGTCAAT 3575 |||||||| CTTTTTTTT. .......... .......... .......... .......... .......... 254 TGCCTCTATT TTGAAATTGG ATTGACTATC AATTTTGAAG GAATTGGAAC TATATCTTTT 3515 .......... .......... .......... .......... .......... .......... 254 TCATTAAAGA GTTGTTCTAC GTATTCACGT CCCTTTAAGA TATGAGAACT GAGATATCTA 3455 .......... .......... .......... .......... .......... .......... 254 ATATCAAAAA TCAAAAATCG TTTTTCAATG TAATAGTATT ATTGGTATGC GCAAAAAAAG 3395 .......... .......... .......... .......... .......... .......... 254 CAAACGGCCA CGATTCTCCT CATCTACTGC AAGGGGGAAA AAAGTTCATT TTATGTGTCA 3335 .......... .......... .......... .......... .......... .......... 254 GCTACAATTA TTAGACCTAA AGAAACAATA TTTTGTCTTC TTGGTTAACT TTTATGTTAT 3275 .......... .......... .......... .......... .......... .......... 254 CTTTCACATT TTCCCCATAC CTCTTTGTTT TGAATTGTGT GGTGATTATA ATAGTGTGCA 3215 .......... .......... .......... .......... .......... .......... 254 CATTTCCAAA TTGACTCTTG TGATGGAAAC AATATTTTTC CAAAAAAATT CCTTTACACT 3155 .......... .......... .......... .......... .......... .......... 254 TCAACGAACA AATAAAATTA GAAATATTAC TCCAAAGTGT GTGACACTGA ACAGCGATTT 3095 .......... .......... .......... .......... .......... .......... 254 AAAGAAGAAA AAAAGAAAAT CATTTCATAA ATTACTAAGA CAACTTTGGA ACTTTCAAAC 3035 .......... .......... .......... .......... .......... .......... 254 GAATTTAGAT AAAACTACGT ATGTATTACT GATTATTTAC GTATAGTAAT CTTAATTTGC 2975 .......... .......... .......... .......... .......... .......... 254 TCTAGGTTGA AGTGTTGTAA ATCTCATGAT CGAGCATCAT TGGATACAAA ATTATTTTTT 2915 .......... .......... .......... .......... .......... .......... 254 TTATTAGAAA ACATTTATTC TAAACGCGAA ATAACATGAA GAATAAAATA TTATATTGAA 2855 .......... .......... .......... .......... .......... .......... 254 TTGCATAAAA TATTTATATG AAAATGACTG GAAAAAGAAA AAAAGAAGAC GTTTATTGAA 2795 .......... .......... .......... .......... .......... .......... 254 TTTAGAAATC ACGGATTCCA AGACCTGTTT TTGATTCCTC AGTTTTTTGC TGTCATCCAG 2735 .......... .......... .......... .......... .......... .......... 254 TGTTACTTGA GCACTTTATT ATATACTCTA CTGTATTTTC TTTATTTTGA TCAGAGGATA 2675 .......... .......... .......... .......... .......... .......... 254 TATTGTGTGT AAGAAAAATA AAAAAATTTA AACTAAATAT ATATGTGTAT AATACTAAAA 2615 .......... .......... .......... .......... .......... .......... 254 AAATTATAAT TATAATTCTT GAATAACAAA GTCGTGATTA ATTAAGTGAA TCCAACTTAT 2555 .......... .......... .......... .......... .......... .......... 254 TTAAATTTGA GTTTCATCTT AATTTGGATT TTTTAAAAAA GTTGTGTGCT TGTGAATTAT 2495 .......... .......... .......... .......... .......... .......... 254 AGTAGATTTC AATTTGAAAA AATAAATAGT GTTCAATTCA ATTATATATC ATCATCAAAG 2435 .......... .......... .......... .......... .......... .......... 254 CCAAACTAAT AATCATAAAA CAAAAGTTAT CATACATCTA TACTTAAACA GATCAATTGT 2375 .......... .......... .......... .......... .......... .......... 254 GTTGAAAATA ATAGTAAAAT AAAAGAATCA GGATGCTGAA TATTTTTATT CGACAATAGA 2315 .......... .......... .......... .......... .......... .......... 254 AATGATTAAT GTTATTGAGC TTCAATACTT TACATTAACT ATTAGTTTCA AGAAAACCAC 2255 .......... .......... .......... .......... .......... .......... 254 CTCAATCTGC CTATTAGTGC CTAACAAAAG CTGTTTGTTC ATAACATATA GAATTATGTT 2195 .......... .......... .......... .......... .......... .......... 254 ATGGATATAG TGGATAGTTG TAATTATTTT ATTTTTCAAT TATTACTGAA AGAATGAAAA 2135 .......... .......... .......... .......... .......... .......... 254 TATAATATAT AGTATATCAA GTTGCTGAAT ATGTCATCAA AGTAGCTCCA AGTATTAGGC 2075 .......... .......... .......... .......... .......... .......... 254 CATAAATTAT GCTAAGTTAA TTCTACTTTC ATTATTTATT TGTTTGATTT TAATGATAAT 2015 .......... .......... .......... .......... .......... .......... 254 CAATTAAAAG AAGGGAAAAT AGGAGCATTA TAGTTAATTA TATATGACAA GTGGATTCAT 1955 .......... .......... .......... .......... .......... .......... 254 TTTATATTTA ATATGATTGT AATGCTAACA AAAGTACTAA GACAACTAAT AACTATTAGT 1895 .......... .......... .......... .......... .......... .......... 254 TACTTATATA ATTAATTAAG TGTTGTGTAC CTAAATATTG TGGTCATGAA AGTCAATATA 1835 .......... .......... .......... .......... .......... .......... 254 ATAATGACCT AAGAGAAAAG CTAAAGGGAT AAAACAAATT CATATAACAT CTAAAATTAA 1775 .......... .......... .......... .......... .......... .......... 254 TTAAAAAGAA AAAATGACAA ATAAATGACA TTTGCAAATT GACTTTTGTC CACAATTTGT 1715 .......... .......... .......... .......... .......... .......... 254 ACACTCACCT TTTAGTCATC CATAGCTACA AAGGAGAAAA CTTATACACA TCATTTTATC 1655 .......... .......... .......... .......... .......... .......... 254 ATGTTTTAAT TTATATGACA TCTAATAATT TATATGACAT CTAATTTATT GAAGAGTTAA 1595 .......... .......... .......... .......... .......... .......... 254 ACAATGATAT AATAAATGTA ATTGCTCTTA TTTTAATCAT AAATTAAGTT CAAATTTTAA 1535 .......... .......... .......... .......... .......... .......... 254 ATATAAAATA TTTTTTTCAA ACAAAATATT AATTAATACA ATCCAAATTA ATTAGACTTT 1475 .......... .......... .......... .......... .......... .......... 254 AATACGTTTA ATATACAAAC AAACACTCCA AACTGACTAT TTTGTCCTAT TTTTTACAAA 1415 .......... .......... .......... .......... .......... .......... 254 ATACGCAGCA TCACGTATAT GTTGCCACCA CCGCCATTAC GTGTCCAACA AAAAACTCCT 1355 .......... .......... .......... .......... .......... .......... 254 ATATATAGTC CCCCTTCTTC CTTTCTTCTT CATCAAAAAA AAAAAGAAAA AAAATCCCCA 1295 ||| ||||| |||| ||| .......... .......... .......... .......AAA AAAAAAAAAA AAA....... 270 ATCTCCAATG GCAAAATCCA CAAAAATTCT CTCATCAATC CTCATTCTCT TCTTCATTTT 1235 .......... .......... .......... .......... .......... .......... 270 CAGTCTATTT TCTTCATCAA ACGCATTAGG CGGAAAGCTC GGCGGAAGAA CACAAATCAA 1175 .......... .......... .......... .......... .......... .......... 270 AAACGTGAAA ACAAATCAGG AAATTCAAGA TCTAGGTAAG TACTGTGTCG AAGAACACAA 1115 .......... .......... .......... .......... .......... .......... 270 CAGAGATTTG CGGCATATCA ATGGTGCTTT GAGTTCTTTA TTGAGTTTTT CTCAAGTTGT 1055 .......... .......... .......... .......... .......... .......... 270 TGAAGCAGAA AAACAAGTTG TTTCTGGTGT TAAATATTAT CTAAAAATCT CAGCTATTGT 995 .......... .......... .......... .......... .......... .......... 270 TAAATCATCT AGCTCACCAA AATTGTTCGA TGCTGTTGTT GTTGTTAAAG CTTGGGAGAA 935 |||||| | |||||| .......... .......... .......... .......... ....TTAAAG CGGGGGAGAT 286 GAAGAAGGAA TTGCTTACGT TTTCTCCTTC TCCTTCACCG GCTACAAAGT GAATTTTCGA 875 || || || || |||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAAAAAAAA ATGATTACGT TTTCTCCTTC TCCTTCACCG GCTACAAAGT GAATTTTCGA 346 TGGTTGATAG TGGCTAAAAG TTAAAACTTC TAGTAGTGCT AATGTTGTTT AATCTAATTT 815 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTTGATAG TGGCTAAAAG TTAAAACTTC TAGTAGTGCT AATGTTGTTT AATCTAATTT 406 TGAAGTACTT TAATTTGTAG CCTTTTTATT TTTTTTAACC TATTTTGAGT TCTCTTGTGT 755 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGTACTT TAATTTGTAG CCTTTTTATT TTTTTTAACC TATTTTGAGT TCTCTTGTGT 466 ACTATGTGAT GCAATAATCA ATGAATGACA TATGTATTAG TATGTTATTA TAGATAAA 697 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| ACTATGTGAT GCAATAATCA ATGAATGACA TATGTATTAG TATGTTATTA TAGATAAA 524 hqPGS_C09HBa0033H16.1-_SGN-E552461+ (950 697) ******************************************************************************** EST sequence 34 +strand 473 n (File: SGN-E212403+) 1 GGAAATTCAA GATCTAGGTA AGTACTGTGT CGAAGAACAC AACAGAGATT TGCGGCATAT 61 CAATGGTGCT TTGAGTTCTT TATTGAGTTT TTCTCAAGTT GTTGAAGCAG AAAAACAAGT 121 TGTTTCTGGT GTTAAATATT ATCTAAAAAT CTCAGCTATT GTTAAATCAT CTAGCTCACC 181 AAAATTGTTC GATGCTGTTG TTGTTGTTAA AGCTTGGGAG AAGAAGAAGG AATTGCTTAC 241 GTTTTCTCCT TCTCCTTCAC CGGCTACAAA GTGAATTTTC GATGGTTGAT AGTGGCTAAA 301 AGTTAAAACT TCTAGTAGTG CTAATGTTGT TTAATCTAAT TTTGAAGTAC TTTAATTTGT 361 AGCCTTTTTA TTTTTTTTAA CCTATTTTGA GGTCTCTTGT GTACTATGTG ATGCAATAAT 421 CAATGAATGA CATATGTATT AGTATGTTAT TATAGATAAA AAAAAAAAAA AAA Predicted gene structure (within gDNA segment 1756 to 1): Exon 1 1156 698 ( 459 n); cDNA 1 459 ( 459 n); score: 0.998 Intron 1 697 513 ( 185 n); Pd: 0.000 (s: 1.00), Pa: 0.933 (s: 0) Exon 2 512 501 ( 12 n); cDNA 460 471 ( 12 n); score: 0.667 MATCH C09HBa0033H16.1- SGN-E212403+ 0.998 471 0.996 C PGS_C09HBa0033H16.1-_SGN-E212403+ (1156 698,512 501) Alignment (genomic DNA sequence = upper lines): GGAAATTCAA GATCTAGGTA AGTACTGTGT CGAAGAACAC AACAGAGATT TGCGGCATAT 1097 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAAATTCAA GATCTAGGTA AGTACTGTGT CGAAGAACAC AACAGAGATT TGCGGCATAT 60 CAATGGTGCT TTGAGTTCTT TATTGAGTTT TTCTCAAGTT GTTGAAGCAG AAAAACAAGT 1037 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATGGTGCT TTGAGTTCTT TATTGAGTTT TTCTCAAGTT GTTGAAGCAG AAAAACAAGT 120 TGTTTCTGGT GTTAAATATT ATCTAAAAAT CTCAGCTATT GTTAAATCAT CTAGCTCACC 977 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTTCTGGT GTTAAATATT ATCTAAAAAT CTCAGCTATT GTTAAATCAT CTAGCTCACC 180 AAAATTGTTC GATGCTGTTG TTGTTGTTAA AGCTTGGGAG AAGAAGAAGG AATTGCTTAC 917 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATTGTTC GATGCTGTTG TTGTTGTTAA AGCTTGGGAG AAGAAGAAGG AATTGCTTAC 240 GTTTTCTCCT TCTCCTTCAC CGGCTACAAA GTGAATTTTC GATGGTTGAT AGTGGCTAAA 857 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTTCTCCT TCTCCTTCAC CGGCTACAAA GTGAATTTTC GATGGTTGAT AGTGGCTAAA 300 AGTTAAAACT TCTAGTAGTG CTAATGTTGT TTAATCTAAT TTTGAAGTAC TTTAATTTGT 797 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTAAAACT TCTAGTAGTG CTAATGTTGT TTAATCTAAT TTTGAAGTAC TTTAATTTGT 360 AGCCTTTTTA TTTTTTTTAA CCTATTTTGA GTTCTCTTGT GTACTATGTG ATGCAATAAT 737 |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| AGCCTTTTTA TTTTTTTTAA CCTATTTTGA GGTCTCTTGT GTACTATGTG ATGCAATAAT 420 CAATGAATGA CATATGTATT AGTATGTTAT TATAGATAAA TTATGCTATC TCTAGTTACT 677 |||||||||| |||||||||| |||||||||| ||||||||| CAATGAATGA CATATGTATT AGTATGTTAT TATAGATAA. .......... .......... 459 ATATCAAATC TCGAAATATT TCATTAATTG ATTCTAGGAA ATATCATCAC CTCCTAATGC 617 .......... .......... .......... .......... .......... .......... 459 AAAGGAGAAG GAAATGAGTA ATATTTAGAC AAAAAAATGA AGGAAACAAA CACAATGTGT 557 .......... .......... .......... .......... .......... .......... 459 TGATATATTA GGGGCATTGG ATGCCTCCAT TAATAATTTA ACAGAAAAAT GTCAAA 501 ||||| ||| .......... .......... .......... .......... ....AAAAAA AAAAAA 471 hqPGS_C09HBa0033H16.1-_SGN-E212403+ (1156 698) ******************************************************************************** EST sequence 41 +strand 508 n (File: SGN-E557055+) 1 GTGCTTTGAG TTCTTTATTG AGTTTTTCTC AAGTTGTTGA AGCAGAAAAA CAAGTTGTTT 61 CTGGTGTTAA ATATTATCTA AAAATCTCAG CTATTGTTAA ATCATCTAGC TCACCAAAAT 121 TGTTCGATGC TGTTGTTGTT GTTAAAGCTT GGGAGAAGAA GAAGGAATTG CTTACGTTTT 181 CTCCTTCTCC TTCACCGGCT ACAAAGTGAA TTTTCGATGG TTGATAGTGG CTAAAAGTTA 241 AAACTTCTAG TAGTGCTAAT GTTGTTTAAT CTAATTTTGA AGTACTTTAA TTTGTAGCCT 301 TTTTATTTTT TTTAACCTAT TTTGAGTTCT CTTGTGTACT ATGTGATGCA ATAATCAATG 361 AATGACATAT GTATTAGTAT GTTATTATAG ATAAAAAAAA AAAAAAAAAA AAAAAAAAAA 421 AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA 481 AAAAAAAAAN NNNNNNGGGG GGGGGGGG Predicted gene structure (within gDNA segment 1691 to 1): Exon 1 1091 698 ( 394 n); cDNA 1 394 ( 394 n); score: 1.000 Intron 1 697 513 ( 185 n); Pd: 0.000 (s: 1.00), Pa: 0.933 (s: 0) Exon 2 512 496 ( 17 n); cDNA 395 411 ( 17 n); score: 0.647 PPA cDNA 458 490 MATCH C09HBa0033H16.1- SGN-E557055+ 1.000 411 0.809 C PGS_C09HBa0033H16.1-_SGN-E557055+ (1091 698,512 496) Alignment (genomic DNA sequence = upper lines): GTGCTTTGAG TTCTTTATTG AGTTTTTCTC AAGTTGTTGA AGCAGAAAAA CAAGTTGTTT 1032 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGCTTTGAG TTCTTTATTG AGTTTTTCTC AAGTTGTTGA AGCAGAAAAA CAAGTTGTTT 60 CTGGTGTTAA ATATTATCTA AAAATCTCAG CTATTGTTAA ATCATCTAGC TCACCAAAAT 972 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGTGTTAA ATATTATCTA AAAATCTCAG CTATTGTTAA ATCATCTAGC TCACCAAAAT 120 TGTTCGATGC TGTTGTTGTT GTTAAAGCTT GGGAGAAGAA GAAGGAATTG CTTACGTTTT 912 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTCGATGC TGTTGTTGTT GTTAAAGCTT GGGAGAAGAA GAAGGAATTG CTTACGTTTT 180 CTCCTTCTCC TTCACCGGCT ACAAAGTGAA TTTTCGATGG TTGATAGTGG CTAAAAGTTA 852 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCCTTCTCC TTCACCGGCT ACAAAGTGAA TTTTCGATGG TTGATAGTGG CTAAAAGTTA 240 AAACTTCTAG TAGTGCTAAT GTTGTTTAAT CTAATTTTGA AGTACTTTAA TTTGTAGCCT 792 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACTTCTAG TAGTGCTAAT GTTGTTTAAT CTAATTTTGA AGTACTTTAA TTTGTAGCCT 300 TTTTATTTTT TTTAACCTAT TTTGAGTTCT CTTGTGTACT ATGTGATGCA ATAATCAATG 732 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTATTTTT TTTAACCTAT TTTGAGTTCT CTTGTGTACT ATGTGATGCA ATAATCAATG 360 AATGACATAT GTATTAGTAT GTTATTATAG ATAAATTATG CTATCTCTAG TTACTATATC 672 |||||||||| |||||||||| |||||||||| |||| AATGACATAT GTATTAGTAT GTTATTATAG ATAA...... .......... .......... 394 AAATCTCGAA ATATTTCATT AATTGATTCT AGGAAATATC ATCACCTCCT AATGCAAAGG 612 .......... .......... .......... .......... .......... .......... 394 AGAAGGAAAT GAGTAATATT TAGACAAAAA AATGAAGGAA ACAAACACAA TGTGTTGATA 552 .......... .......... .......... .......... .......... .......... 394 TATTAGGGGC ATTGGATGCC TCCATTAATA ATTTAACAGA AAAATGTCAA AGACAA 496 | |||| || | | || .......... .......... .......... .........A AAAAAAAAAA AAAAAA 411 hqPGS_C09HBa0033H16.1-_SGN-E557055+ (1091 698) ******************************************************************************** EST sequence 39 +strand 528 n (File: SGN-E352159+) 1 TCGGCGGAAG AACACAAATC AAAAACGTGA AAACAAATCA GGAAATTCAA GATCTAGGTA 61 AGTACTGTGT CGAAGAACAC AACAGAGATT TGCGGCATAT CAATGGTGCT TTGAGTTCTT 121 TATTGAGTTT TTCTCAAGTT GTTGAAGCAG AAAAACAAGT TGTTTCTGGT GTTAAATATT 181 ATCTAAAAAT CTCAGCTATT GTTAAATCAT CTAGCTCACC AAAATTGTTC GATGCTGTTG 241 TTGTTGTTAA AGCTTGGGAG AAGAAGAAGG AATTGCTTAC GTTTTCTCCT TCTCCTTCAC 301 CGGCTACAAA GTGAATTTTC GATGGTTGAT AGTGGCTAAA AGTTAAAACT TCTAGTAGTG 361 CTAATGTTGT TTAATCTAAT TTTGAAGTAC TTTAATTTGT AGCCTTTTTA TTTTTTTTAA 421 CCTATTTTGA GTTCTCTTGT GTACTATGTG ATGCAATAAT CAATGAATGA CATATGTATT 481 AGTATGTTAT TATAGATANN NNNNNAAAAA AAAAAAAAAA AAAAAAAA Predicted gene structure (within gDNA segment 1796 to 1): Exon 1 1196 699 ( 498 n); cDNA 1 498 ( 498 n); score: 1.000 PPA cDNA 506 528 MATCH C09HBa0033H16.1- SGN-E352159+ 1.000 498 0.943 C PGS_C09HBa0033H16.1-_SGN-E352159+ (1196 699) Alignment (genomic DNA sequence = upper lines): TCGGCGGAAG AACACAAATC AAAAACGTGA AAACAAATCA GGAAATTCAA GATCTAGGTA 1137 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGGCGGAAG AACACAAATC AAAAACGTGA AAACAAATCA GGAAATTCAA GATCTAGGTA 60 AGTACTGTGT CGAAGAACAC AACAGAGATT TGCGGCATAT CAATGGTGCT TTGAGTTCTT 1077 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTACTGTGT CGAAGAACAC AACAGAGATT TGCGGCATAT CAATGGTGCT TTGAGTTCTT 120 TATTGAGTTT TTCTCAAGTT GTTGAAGCAG AAAAACAAGT TGTTTCTGGT GTTAAATATT 1017 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTGAGTTT TTCTCAAGTT GTTGAAGCAG AAAAACAAGT TGTTTCTGGT GTTAAATATT 180 ATCTAAAAAT CTCAGCTATT GTTAAATCAT CTAGCTCACC AAAATTGTTC GATGCTGTTG 957 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTAAAAAT CTCAGCTATT GTTAAATCAT CTAGCTCACC AAAATTGTTC GATGCTGTTG 240 TTGTTGTTAA AGCTTGGGAG AAGAAGAAGG AATTGCTTAC GTTTTCTCCT TCTCCTTCAC 897 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTTGTTAA AGCTTGGGAG AAGAAGAAGG AATTGCTTAC GTTTTCTCCT TCTCCTTCAC 300 CGGCTACAAA GTGAATTTTC GATGGTTGAT AGTGGCTAAA AGTTAAAACT TCTAGTAGTG 837 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGCTACAAA GTGAATTTTC GATGGTTGAT AGTGGCTAAA AGTTAAAACT TCTAGTAGTG 360 CTAATGTTGT TTAATCTAAT TTTGAAGTAC TTTAATTTGT AGCCTTTTTA TTTTTTTTAA 777 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAATGTTGT TTAATCTAAT TTTGAAGTAC TTTAATTTGT AGCCTTTTTA TTTTTTTTAA 420 CCTATTTTGA GTTCTCTTGT GTACTATGTG ATGCAATAAT CAATGAATGA CATATGTATT 717 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTATTTTGA GTTCTCTTGT GTACTATGTG ATGCAATAAT CAATGAATGA CATATGTATT 480 AGTATGTTAT TATAGATA 699 |||||||||| |||||||| AGTATGTTAT TATAGATA 498 hqPGS_C09HBa0033H16.1-_SGN-E352159+ (1196 699) ******************************************************************************** EST sequence 36 +strand 607 n (File: SGN-E553871+) 1 AAAAATCCCC AATCTCCAAT GGCAAAATCC ACAAAAATTC TCTCATCAAT CCTCATTCTC 61 TTCTTCATTT TCAGTCTATT TTCTTCATCA AACGCATTAG GCGGAAAGCT CGGCGGAAGA 121 ACACAAATCA AAAACGTGAA AACAAATCAG GAAATTCAAG ATCTAGGTAA GTACTGTGTC 181 GAAGAACACA ACAGAGATTT GCGGCATATC AATGGTGCTT TGAGTTCTTT ATTGAGTTTT 241 TCTCAAGTTG TTGAAGCAGA AAAACAAGTT GTTTCTGGTG TTAAATATTA TCTAAAAATC 301 TCAGCTATTG TTAAATCATC TAGCTCACCA AAATTGTTCG ATGCTGTTGT TGTTGTTAAA 361 GCTTGGGAGA AGAAGAAGGA ATTGCTTACG TTTTCTCCTT CTCCTTCACC GGCTACAAAG 421 TGAATTTTCG ATGGTTGATA GTGGCTAAAA GTTAAAACTT CTAGTAGTGC TAATGTTGTT 481 TAATCTAATT TTGAAGTACT TTAATTTGTA GCCTTTTTAT TTTTTTTTAA CCTATTTTGA 541 GTTCTCTTGT GTACTATGTG ATGCAATAAT CAATGAATGA CATATGTATT AGTATGTTAT 601 TATAGAT Predicted gene structure (within gDNA segment 1905 to 90): Exon 1 1305 700 ( 606 n); cDNA 1 607 ( 607 n); score: 0.996 MATCH C09HBa0033H16.1- SGN-E553871+ 0.996 606 0.998 C PGS_C09HBa0033H16.1-_SGN-E553871+ (1305 700) Alignment (genomic DNA sequence = upper lines): AAAAATCCCC AATCTCCAAT GGCAAAATCC ACAAAAATTC TCTCATCAAT CCTCATTCTC 1246 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAATCCCC AATCTCCAAT GGCAAAATCC ACAAAAATTC TCTCATCAAT CCTCATTCTC 60 TTCTTCATTT TCAGTCTATT TTCTTCATCA AACGCATTAG GCGGAAAGCT CGGCGGAAGA 1186 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTTCATTT TCAGTCTATT TTCTTCATCA AACGCATTAG GCGGAAAGCT CGGCGGAAGA 120 ACACAAATCA AAAACGTGAA AACAAATCAG GAAATTCAAG ATCTAGGTAA GTACTGTGTC 1126 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACAAATCA AAAACGTGAA AACAAATCAG GAAATTCAAG ATCTAGGTAA GTACTGTGTC 180 GAAGAACACA ACAGAGATTT GCGGCATATC AATGGTGCTT TGAGTTCTTT ATTGAGTTTT 1066 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGAACACA ACAGAGATTT GCGGCATATC AATGGTGCTT TGAGTTCTTT ATTGAGTTTT 240 TCTCAAGTTG TTGAAGCAGA AAAACAAGTT GTTTCTGGTG TTAAATATTA TCTAAAAATC 1006 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCAAGTTG TTGAAGCAGA AAAACAAGTT GTTTCTGGTG TTAAATATTA TCTAAAAATC 300 TCAGCTATTG TTAAATCATC TAGCTCACCA AAATTGTTCG ATGCTGTTGT TGTTGTTAAA 946 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGCTATTG TTAAATCATC TAGCTCACCA AAATTGTTCG ATGCTGTTGT TGTTGTTAAA 360 GCTTGGGAGA AGAAGAAGGA ATTGCTTACG TTTTCTCCTT CTCCTTCACC GGCTACAAAG 886 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTGGGAGA AGAAGAAGGA ATTGCTTACG TTTTCTCCTT CTCCTTCACC GGCTACAAAG 420 TGAATTTTCG ATGGTTGATA GTGGCTAAAA GTTAAAACTT CTAGTAGTGC TAATGTTGTT 826 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAATTTTCG ATGGTTGATA GTGGCTAAAA GTTAAAACTT CTAGTAGTGC TAATGTTGTT 480 TAATCTAATT TTGAAGTACT TTAATTTGTA GCCTTTTTAT TTTTTTT-AA CCTATTTTGA 767 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| TAATCTAATT TTGAAGTACT TTAATTTGTA GCCTTTTTAT TTTTTTTTAA CCTATTTTGA 540 GTTCTCTTGT GTACTATGTG ATGCAATAAT CAATGAATGA CATATGTATT AGTATGTTAT 707 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCTCTTGT GTACTATGTG ATGCAATAAT CAATGAATGA CATATGTATT AGTATGTTAT 600 TATAGAT 700 ||||||| TATAGAT 607 hqPGS_C09HBa0033H16.1-_SGN-E553871+ (1305 700) ******************************************************************************** EST sequence 42 +strand 592 n (File: SGN-E354030+) 1 ATCCCCAATC TCCAATGGCA AAATCCACAA AAATTCTCTC ATCAATCCTC ATTCTCTTCT 61 TCATTTTCAG TCTATTTTCT TCATCAAACG CATTAGGCGG AAAGCTCGGC GGAAGAACAC 121 AAATCAAAAA CGTGAAAACA AATCAGGAAA TTCAAGATCT AGGTAAGTAC TGTGTCGAAG 181 AACACAACAG AGATTTGCGG CATATCAATG GTGCTTTGAG TTCTTTATTG AGTTTTTCTC 241 AAGTTGTTGA AGCAGAAAAA CAAGTTGTTT CTGGTGTTAA ATATTATCTA AAAATCTCAG 301 CTATTGTTAA ATCATCTAGC TCACCAAAAT TGTTCGATGC TGTTGTTGTT GTTAAAGCTT 361 GGGAGAAGAA GAAGGAATTG CTTACGTTTT CTCCTTCTCC TTCACCGGCT ACAAAGTGAA 421 TTTTCGATGG TTGATAGTGG CTAAAAGTTA AAACTTCTAG TAGTGCTAAT GTTGTTTAAT 481 CTAATTTTGA AGTACTTTAA TTTGTAGCCT TTTTATTTTT TTTAACCTAT TTTGAGTTCT 541 CTTGTGTACT ATGTGATGCA ATAATCAATG AATGACATAT GTATTAGTAT GG Predicted gene structure (within gDNA segment 1901 to 91): Exon 1 1301 711 ( 591 n); cDNA 1 591 ( 591 n); score: 1.000 MATCH C09HBa0033H16.1- SGN-E354030+ 1.000 591 0.998 C PGS_C09HBa0033H16.1-_SGN-E354030+ (1301 711) Alignment (genomic DNA sequence = upper lines): ATCCCCAATC TCCAATGGCA AAATCCACAA AAATTCTCTC ATCAATCCTC ATTCTCTTCT 1242 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCCCAATC TCCAATGGCA AAATCCACAA AAATTCTCTC ATCAATCCTC ATTCTCTTCT 60 TCATTTTCAG TCTATTTTCT TCATCAAACG CATTAGGCGG AAAGCTCGGC GGAAGAACAC 1182 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATTTTCAG TCTATTTTCT TCATCAAACG CATTAGGCGG AAAGCTCGGC GGAAGAACAC 120 AAATCAAAAA CGTGAAAACA AATCAGGAAA TTCAAGATCT AGGTAAGTAC TGTGTCGAAG 1122 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATCAAAAA CGTGAAAACA AATCAGGAAA TTCAAGATCT AGGTAAGTAC TGTGTCGAAG 180 AACACAACAG AGATTTGCGG CATATCAATG GTGCTTTGAG TTCTTTATTG AGTTTTTCTC 1062 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACACAACAG AGATTTGCGG CATATCAATG GTGCTTTGAG TTCTTTATTG AGTTTTTCTC 240 AAGTTGTTGA AGCAGAAAAA CAAGTTGTTT CTGGTGTTAA ATATTATCTA AAAATCTCAG 1002 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTTGTTGA AGCAGAAAAA CAAGTTGTTT CTGGTGTTAA ATATTATCTA AAAATCTCAG 300 CTATTGTTAA ATCATCTAGC TCACCAAAAT TGTTCGATGC TGTTGTTGTT GTTAAAGCTT 942 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTATTGTTAA ATCATCTAGC TCACCAAAAT TGTTCGATGC TGTTGTTGTT GTTAAAGCTT 360 GGGAGAAGAA GAAGGAATTG CTTACGTTTT CTCCTTCTCC TTCACCGGCT ACAAAGTGAA 882 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGAGAAGAA GAAGGAATTG CTTACGTTTT CTCCTTCTCC TTCACCGGCT ACAAAGTGAA 420 TTTTCGATGG TTGATAGTGG CTAAAAGTTA AAACTTCTAG TAGTGCTAAT GTTGTTTAAT 822 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCGATGG TTGATAGTGG CTAAAAGTTA AAACTTCTAG TAGTGCTAAT GTTGTTTAAT 480 CTAATTTTGA AGTACTTTAA TTTGTAGCCT TTTTATTTTT TTTAACCTAT TTTGAGTTCT 762 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAATTTTGA AGTACTTTAA TTTGTAGCCT TTTTATTTTT TTTAACCTAT TTTGAGTTCT 540 CTTGTGTACT ATGTGATGCA ATAATCAATG AATGACATAT GTATTAGTAT G 711 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | CTTGTGTACT ATGTGATGCA ATAATCAATG AATGACATAT GTATTAGTAT G 591 hqPGS_C09HBa0033H16.1-_SGN-E354030+ (1301 711) ******************************************************************************** EST sequence 46 +strand 589 n (File: SGN-E357600+) 1 AAAAATCCCC AATCTCCAAT GGCAAAATCC ACAAAAATTC TCTCATCAAT CCTCATTCTC 61 TTCTTCATTT TCAGTCTATT TTCTTCATCA AACGCATTAG GCGGAAAGCT CGGCGGAAGA 121 ACACAAATCA AAAACGTGAA AACAAATCAG GAAATTCAAG ATCTAGGTAA GTACTGTGTC 181 GAAGAACACA ACAGAGATTT GCGGCATATC AATGGTGCTT TGAGTTCTTT ATTGAGTTTT 241 TCTCAAGTTG TTGAAGCAGA AAAACAAGTT GTTTCTGGTG TTAAATATTA TCTAAAAATC 301 TCAGCTATTG TTAAATCATC TAGCTCACCA AAATTGTTCG ATGCTGTTGT TGTTGTTAAA 361 GCTTGGGAGA AGAAGAAGGA ATTGCTTACG TTTTCTCCTT CTCCTTCACC GGCTACAAAG 421 TGAATTTTCG ATGGTTGATA GTGGCTAAAA GTTAAAACTT CTAGTAATGC TAATGGTGGT 481 TAATCTAATT TTGAAGTACT TTAATTTGTA GCCTTTTTAT TTTTTTTAAC CTAATTTGAG 541 TTCTCCTGTG GACTATGTGA TGCCATAATC CATGAATGAC ATATGGATT Predicted gene structure (within gDNA segment 1905 to 1): Exon 1 1305 717 ( 589 n); cDNA 1 589 ( 589 n); score: 0.985 MATCH C09HBa0033H16.1- SGN-E357600+ 0.985 589 1.000 C PGS_C09HBa0033H16.1-_SGN-E357600+ (1305 717) Alignment (genomic DNA sequence = upper lines): AAAAATCCCC AATCTCCAAT GGCAAAATCC ACAAAAATTC TCTCATCAAT CCTCATTCTC 1246 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAATCCCC AATCTCCAAT GGCAAAATCC ACAAAAATTC TCTCATCAAT CCTCATTCTC 60 TTCTTCATTT TCAGTCTATT TTCTTCATCA AACGCATTAG GCGGAAAGCT CGGCGGAAGA 1186 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTTCATTT TCAGTCTATT TTCTTCATCA AACGCATTAG GCGGAAAGCT CGGCGGAAGA 120 ACACAAATCA AAAACGTGAA AACAAATCAG GAAATTCAAG ATCTAGGTAA GTACTGTGTC 1126 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACAAATCA AAAACGTGAA AACAAATCAG GAAATTCAAG ATCTAGGTAA GTACTGTGTC 180 GAAGAACACA ACAGAGATTT GCGGCATATC AATGGTGCTT TGAGTTCTTT ATTGAGTTTT 1066 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGAACACA ACAGAGATTT GCGGCATATC AATGGTGCTT TGAGTTCTTT ATTGAGTTTT 240 TCTCAAGTTG TTGAAGCAGA AAAACAAGTT GTTTCTGGTG TTAAATATTA TCTAAAAATC 1006 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCAAGTTG TTGAAGCAGA AAAACAAGTT GTTTCTGGTG TTAAATATTA TCTAAAAATC 300 TCAGCTATTG TTAAATCATC TAGCTCACCA AAATTGTTCG ATGCTGTTGT TGTTGTTAAA 946 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGCTATTG TTAAATCATC TAGCTCACCA AAATTGTTCG ATGCTGTTGT TGTTGTTAAA 360 GCTTGGGAGA AGAAGAAGGA ATTGCTTACG TTTTCTCCTT CTCCTTCACC GGCTACAAAG 886 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTGGGAGA AGAAGAAGGA ATTGCTTACG TTTTCTCCTT CTCCTTCACC GGCTACAAAG 420 TGAATTTTCG ATGGTTGATA GTGGCTAAAA GTTAAAACTT CTAGTAGTGC TAATGTTGTT 826 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| ||||| || | TGAATTTTCG ATGGTTGATA GTGGCTAAAA GTTAAAACTT CTAGTAATGC TAATGGTGGT 480 TAATCTAATT TTGAAGTACT TTAATTTGTA GCCTTTTTAT TTTTTTTAAC CTATTTTGAG 766 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| TAATCTAATT TTGAAGTACT TTAATTTGTA GCCTTTTTAT TTTTTTTAAC CTAATTTGAG 540 TTCTCTTGTG TACTATGTGA TGCAATAATC AATGAATGAC ATATGTATT 717 ||||| |||| ||||||||| ||| |||||| ||||||||| ||||| ||| TTCTCCTGTG GACTATGTGA TGCCATAATC CATGAATGAC ATATGGATT 589 hqPGS_C09HBa0033H16.1-_SGN-E357600+ (1305 717) ******************************************************************************** EST sequence 43 +strand 585 n (File: SGN-E266444+) 1 ATCCCCAATC TCCAATGGCA AAATCCACAA AAATTCTCTC ATCAATCCTC ATTCTCTTCT 61 TCATTATCAG TCTATTTTCT TCATCAAACG CATTAGGCGG AAAGCTCGGC GGAAGAACAC 121 AAATCAAAAA CGTGAAAACA AATCAGGAAA TTCAAGATCT AGGTAAGTAC TGTGTCGAAG 181 AACACAACAG AGATTTGCGG CATATCAATG GTGCTTTGAG TTCTTTATTG AGTTCTTCTC 241 AAGTTGTTGA AGCAGAAAAA CAAGTTGCTT CTGGTGTTAA ATATTATCTA AAAATCTCAG 301 CTATTGTTAA ATCATCTAGC TCACCAAAAT TGTTCGATGC TGTTGTTGTT GTTAAAGCTT 361 GGGAGAAGAA GAAGGAATTG CTTACGTTTT CTCCTTCTCC TTCACCGGCT ACAAAGTGAA 421 TTTTCGATGG TTGATAGTGG CTAAAAGTTA AAACTTCTAG TAGTGCTAAT GTTGTTTAAT 481 CTAATTTTGA AGTACTATAA TTTGTAGCCT TTTTATTTTT TTTAACCTAT ATTGAGTTCT 541 CTTGTGTACT ATGTGATGCA ATAATCAATG AATGACATAT GTATT Predicted gene structure (within gDNA segment 1901 to 107): Exon 1 1301 717 ( 585 n); cDNA 1 585 ( 585 n); score: 0.991 MATCH C09HBa0033H16.1- SGN-E266444+ 0.991 585 1.000 C PGS_C09HBa0033H16.1-_SGN-E266444+ (1301 717) Alignment (genomic DNA sequence = upper lines): ATCCCCAATC TCCAATGGCA AAATCCACAA AAATTCTCTC ATCAATCCTC ATTCTCTTCT 1242 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCCCAATC TCCAATGGCA AAATCCACAA AAATTCTCTC ATCAATCCTC ATTCTCTTCT 60 TCATTTTCAG TCTATTTTCT TCATCAAACG CATTAGGCGG AAAGCTCGGC GGAAGAACAC 1182 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATTATCAG TCTATTTTCT TCATCAAACG CATTAGGCGG AAAGCTCGGC GGAAGAACAC 120 AAATCAAAAA CGTGAAAACA AATCAGGAAA TTCAAGATCT AGGTAAGTAC TGTGTCGAAG 1122 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATCAAAAA CGTGAAAACA AATCAGGAAA TTCAAGATCT AGGTAAGTAC TGTGTCGAAG 180 AACACAACAG AGATTTGCGG CATATCAATG GTGCTTTGAG TTCTTTATTG AGTTTTTCTC 1062 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| AACACAACAG AGATTTGCGG CATATCAATG GTGCTTTGAG TTCTTTATTG AGTTCTTCTC 240 AAGTTGTTGA AGCAGAAAAA CAAGTTGTTT CTGGTGTTAA ATATTATCTA AAAATCTCAG 1002 |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| AAGTTGTTGA AGCAGAAAAA CAAGTTGCTT CTGGTGTTAA ATATTATCTA AAAATCTCAG 300 CTATTGTTAA ATCATCTAGC TCACCAAAAT TGTTCGATGC TGTTGTTGTT GTTAAAGCTT 942 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTATTGTTAA ATCATCTAGC TCACCAAAAT TGTTCGATGC TGTTGTTGTT GTTAAAGCTT 360 GGGAGAAGAA GAAGGAATTG CTTACGTTTT CTCCTTCTCC TTCACCGGCT ACAAAGTGAA 882 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGAGAAGAA GAAGGAATTG CTTACGTTTT CTCCTTCTCC TTCACCGGCT ACAAAGTGAA 420 TTTTCGATGG TTGATAGTGG CTAAAAGTTA AAACTTCTAG TAGTGCTAAT GTTGTTTAAT 822 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCGATGG TTGATAGTGG CTAAAAGTTA AAACTTCTAG TAGTGCTAAT GTTGTTTAAT 480 CTAATTTTGA AGTACTTTAA TTTGTAGCCT TTTTATTTTT TTTAACCTAT TTTGAGTTCT 762 |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| ||||||||| CTAATTTTGA AGTACTATAA TTTGTAGCCT TTTTATTTTT TTTAACCTAT ATTGAGTTCT 540 CTTGTGTACT ATGTGATGCA ATAATCAATG AATGACATAT GTATT 717 |||||||||| |||||||||| |||||||||| |||||||||| ||||| CTTGTGTACT ATGTGATGCA ATAATCAATG AATGACATAT GTATT 585 hqPGS_C09HBa0033H16.1-_SGN-E266444+ (1301 717) ******************************************************************************** EST sequence 45 +strand 586 n (File: SGN-E309170+) 1 AAAAAAATCC CCAATCTCCA ATGGCAAAAT CCACAAAAAT TCTCTCATCA ATCCTCATTC 61 TCTTCTTCAT TTTCAGTCTA TTTTCTTCAT CAAACGCATT AGGCGGAAAG CTCGGCGGAA 121 GAACACAAAT CAAAAACGTG AAAACAAATC AGGAAATTCA AGATCTAGGT AAGTACTGTG 181 TCGAAGAACA CAACAGAGAT TTGCGGCATA TCAATGGTGC TTTGAGTTCT TTATTGAGTT 241 TTTCTCAAGT TGTTGAAGCA GAAAAACAAG TTGTTTCTGG TGTTAAATAT TATCTAAAAA 301 TCTCAGCTAT TGTTAAATCA TCTAGCTCAC CAAAATTGTT CGATGCTGTT GTTGTTGTTA 361 AAGCTTGGGA GAAGAAGAAG GAATTGCTTA CGTTTTCTCC TTCTCCTTCA CCGGCTACAA 421 AGTGAATTTT CGATGGTTGA TAGTGGCTAA AAGTAAAACT TCTAGTAGTG CTAATGTTGT 481 TTAATCTAAT TTTGAAGTAC TTTAATTTGT AGCCTTTTTA TTTTTTTTAA CCTATTTTGA 541 GTTCTCTTGT GTACTATGTG ATGCAATAAT CAATGAATGA CATATG Predicted gene structure (within gDNA segment 1907 to 111): Exon 1 1307 721 ( 587 n); cDNA 1 586 ( 586 n); score: 0.998 MATCH C09HBa0033H16.1- SGN-E309170+ 0.998 587 1.002 C PGS_C09HBa0033H16.1-_SGN-E309170+ (1307 721) Alignment (genomic DNA sequence = upper lines): AAAAAAATCC CCAATCTCCA ATGGCAAAAT CCACAAAAAT TCTCTCATCA ATCCTCATTC 1248 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAAAATCC CCAATCTCCA ATGGCAAAAT CCACAAAAAT TCTCTCATCA ATCCTCATTC 60 TCTTCTTCAT TTTCAGTCTA TTTTCTTCAT CAAACGCATT AGGCGGAAAG CTCGGCGGAA 1188 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTCTTCAT TTTCAGTCTA TTTTCTTCAT CAAACGCATT AGGCGGAAAG CTCGGCGGAA 120 GAACACAAAT CAAAAACGTG AAAACAAATC AGGAAATTCA AGATCTAGGT AAGTACTGTG 1128 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACACAAAT CAAAAACGTG AAAACAAATC AGGAAATTCA AGATCTAGGT AAGTACTGTG 180 TCGAAGAACA CAACAGAGAT TTGCGGCATA TCAATGGTGC TTTGAGTTCT TTATTGAGTT 1068 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGAAGAACA CAACAGAGAT TTGCGGCATA TCAATGGTGC TTTGAGTTCT TTATTGAGTT 240 TTTCTCAAGT TGTTGAAGCA GAAAAACAAG TTGTTTCTGG TGTTAAATAT TATCTAAAAA 1008 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCTCAAGT TGTTGAAGCA GAAAAACAAG TTGTTTCTGG TGTTAAATAT TATCTAAAAA 300 TCTCAGCTAT TGTTAAATCA TCTAGCTCAC CAAAATTGTT CGATGCTGTT GTTGTTGTTA 948 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCAGCTAT TGTTAAATCA TCTAGCTCAC CAAAATTGTT CGATGCTGTT GTTGTTGTTA 360 AAGCTTGGGA GAAGAAGAAG GAATTGCTTA CGTTTTCTCC TTCTCCTTCA CCGGCTACAA 888 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCTTGGGA GAAGAAGAAG GAATTGCTTA CGTTTTCTCC TTCTCCTTCA CCGGCTACAA 420 AGTGAATTTT CGATGGTTGA TAGTGGCTAA AAGTTAAAAC TTCTAGTAGT GCTAATGTTG 828 |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| AGTGAATTTT CGATGGTTGA TAGTGGCTAA AAG-TAAAAC TTCTAGTAGT GCTAATGTTG 479 TTTAATCTAA TTTTGAAGTA CTTTAATTTG TAGCCTTTTT ATTTTTTTTA ACCTATTTTG 768 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTAATCTAA TTTTGAAGTA CTTTAATTTG TAGCCTTTTT ATTTTTTTTA ACCTATTTTG 539 AGTTCTCTTG TGTACTATGT GATGCAATAA TCAATGAATG ACATATG 721 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| AGTTCTCTTG TGTACTATGT GATGCAATAA TCAATGAATG ACATATG 586 hqPGS_C09HBa0033H16.1-_SGN-E309170+ (1307 721) ******************************************************************************** EST sequence 31 +strand 532 n (File: SGN-E348694+) 1 TCATTCTCTT CTTCATTTTC AGTCTATTTT CTTCATCAAA CGCATTAGGC GGAAAGCTCG 61 GCGGAAGAAC ACAAATCAAA AACGTGAAAA CAAATCAGGA AATTCAAGAT CTAGGTAAGT 121 ACTGTGTCGA AGAACACAAC AGAGATTTGC GGCATATCAA TGGTGCTTTG AGTTCTTTAT 181 TGAGTTTTTC TCAAGTTGTT GAAGCAGAAA AACAAGTTGT TTCTGGTGTT AAATATTATC 241 TAAAAATCTC AGCTATTGTT AAATCATCTA GCTCACCAAA ATTGTTCGAT GCTGTTGTTG 301 TTGTTAAAGC TTGGGAGAAG AAGAAGGAAT TGCTTACGTT TTCTCCTTCT CCTTCACCGG 361 CTACAAAGTG AATNNTCGAT GGTTGATAGT GGCTAAAAGT TAAAACTTCT AGTAGTGCTA 421 ATGGTGNTTA ATCTAATTTT GAAGTACTTT AATTTGTAGC CTTTTTATTT TTTTTAACCT 481 ATTTTTGAGT CTCTTGTGTA CTATGTGATG CANTAATCAA TGAATGACAT AT Predicted gene structure (within gDNA segment 1853 to 112): Exon 1 1253 722 ( 532 n); cDNA 1 532 ( 532 n); score: 0.983 MATCH C09HBa0033H16.1- SGN-E348694+ 0.983 532 1.000 C PGS_C09HBa0033H16.1-_SGN-E348694+ (1253 722) Alignment (genomic DNA sequence = upper lines): TCATTCTCTT CTTCATTTTC AGTCTATTTT CTTCATCAAA CGCATTAGGC GGAAAGCTCG 1194 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATTCTCTT CTTCATTTTC AGTCTATTTT CTTCATCAAA CGCATTAGGC GGAAAGCTCG 60 GCGGAAGAAC ACAAATCAAA AACGTGAAAA CAAATCAGGA AATTCAAGAT CTAGGTAAGT 1134 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGGAAGAAC ACAAATCAAA AACGTGAAAA CAAATCAGGA AATTCAAGAT CTAGGTAAGT 120 ACTGTGTCGA AGAACACAAC AGAGATTTGC GGCATATCAA TGGTGCTTTG AGTTCTTTAT 1074 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTGTGTCGA AGAACACAAC AGAGATTTGC GGCATATCAA TGGTGCTTTG AGTTCTTTAT 180 TGAGTTTTTC TCAAGTTGTT GAAGCAGAAA AACAAGTTGT TTCTGGTGTT AAATATTATC 1014 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGTTTTTC TCAAGTTGTT GAAGCAGAAA AACAAGTTGT TTCTGGTGTT AAATATTATC 240 TAAAAATCTC AGCTATTGTT AAATCATCTA GCTCACCAAA ATTGTTCGAT GCTGTTGTTG 954 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAAAATCTC AGCTATTGTT AAATCATCTA GCTCACCAAA ATTGTTCGAT GCTGTTGTTG 300 TTGTTAAAGC TTGGGAGAAG AAGAAGGAAT TGCTTACGTT TTCTCCTTCT CCTTCACCGG 894 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTTAAAGC TTGGGAGAAG AAGAAGGAAT TGCTTACGTT TTCTCCTTCT CCTTCACCGG 360 CTACAAAGTG AATTTTCGAT GGTTGATAGT GGCTAAAAGT TAAAACTTCT AGTAGTGCTA 834 |||||||||| ||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| CTACAAAGTG AATNNTCGAT GGTTGATAGT GGCTAAAAGT TAAAACTTCT AGTAGTGCTA 420 ATGTTGTTTA ATCTAATTTT GAAGTACTTT AATTTGTAGC CTTTTTATTT TTTTTAACCT 774 ||| || ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGTGNTTA ATCTAATTTT GAAGTACTTT AATTTGTAGC CTTTTTATTT TTTTTAACCT 480 ATTTTGAGTT CTCTTGTGTA CTATGTGATG CAATAATCAA TGAATGACAT AT 722 ||||| | |||||||||| |||||||||| || ||||||| |||||||||| || ATTTTTGAGT CTCTTGTGTA CTATGTGATG CANTAATCAA TGAATGACAT AT 532 hqPGS_C09HBa0033H16.1-_SGN-E348694+ (1253 722) ******************************************************************************** EST sequence 38 +strand 532 n (File: SGN-E287327+) 1 AAAAATTCTC TCATCAATCC TCATTCTCTT CTTCATTTTC AGTCTATTTT CTTCATCAAA 61 CGCATTAGGC GGAAAGCTCG GCGGAAGAAC ACAAATCAAA AACGTGAAAA CAAATCAGGA 121 AATTCAAGAT CTAGGTAAGT ACTGTGTCGA AGAACACAAC AGAGATTTGC GGCATATCAA 181 TGGTGCTTTG AGTTCTTTAT TGAGTTTTTC TCAAGTTGTT GAAGCAGAAA AACAAGTTGT 241 TTCTGGTGTT AAATATTATC TAAAAATCTC AGCTATTGTT AAATCATCTA GCTCACCAAA 301 ATTGTTCGAT GCTGTTGTTG TTGTTAAAGC TTGGGAGAAG AAGAAGGAAT TGCTTACGTT 361 TTCTCCTTCT CCTTCACCGG CTACAAAGTG AATTTTCGAT GGTTGATAGT GGCTAAAAGT 421 TAAAACTTCT AGTAGTGCTA ATGTTGTTTA ATCTAATTTT GAAGTACTTT AATTTGTAGC 481 CTTTTTATTT TTTTTAACCT ATTTTGAGTT CTCTTGTGTA CTAAAAAAAA AA Predicted gene structure (within gDNA segment 1873 to 51): Exon 1 1273 751 ( 523 n); cDNA 1 523 ( 523 n); score: 1.000 MATCH C09HBa0033H16.1- SGN-E287327+ 1.000 523 0.983 C PGS_C09HBa0033H16.1-_SGN-E287327+ (1273 751) Alignment (genomic DNA sequence = upper lines): AAAAATTCTC TCATCAATCC TCATTCTCTT CTTCATTTTC AGTCTATTTT CTTCATCAAA 1214 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAATTCTC TCATCAATCC TCATTCTCTT CTTCATTTTC AGTCTATTTT CTTCATCAAA 60 CGCATTAGGC GGAAAGCTCG GCGGAAGAAC ACAAATCAAA AACGTGAAAA CAAATCAGGA 1154 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCATTAGGC GGAAAGCTCG GCGGAAGAAC ACAAATCAAA AACGTGAAAA CAAATCAGGA 120 AATTCAAGAT CTAGGTAAGT ACTGTGTCGA AGAACACAAC AGAGATTTGC GGCATATCAA 1094 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTCAAGAT CTAGGTAAGT ACTGTGTCGA AGAACACAAC AGAGATTTGC GGCATATCAA 180 TGGTGCTTTG AGTTCTTTAT TGAGTTTTTC TCAAGTTGTT GAAGCAGAAA AACAAGTTGT 1034 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGCTTTG AGTTCTTTAT TGAGTTTTTC TCAAGTTGTT GAAGCAGAAA AACAAGTTGT 240 TTCTGGTGTT AAATATTATC TAAAAATCTC AGCTATTGTT AAATCATCTA GCTCACCAAA 974 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTGGTGTT AAATATTATC TAAAAATCTC AGCTATTGTT AAATCATCTA GCTCACCAAA 300 ATTGTTCGAT GCTGTTGTTG TTGTTAAAGC TTGGGAGAAG AAGAAGGAAT TGCTTACGTT 914 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGTTCGAT GCTGTTGTTG TTGTTAAAGC TTGGGAGAAG AAGAAGGAAT TGCTTACGTT 360 TTCTCCTTCT CCTTCACCGG CTACAAAGTG AATTTTCGAT GGTTGATAGT GGCTAAAAGT 854 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTCCTTCT CCTTCACCGG CTACAAAGTG AATTTTCGAT GGTTGATAGT GGCTAAAAGT 420 TAAAACTTCT AGTAGTGCTA ATGTTGTTTA ATCTAATTTT GAAGTACTTT AATTTGTAGC 794 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAAACTTCT AGTAGTGCTA ATGTTGTTTA ATCTAATTTT GAAGTACTTT AATTTGTAGC 480 CTTTTTATTT TTTTTAACCT ATTTTGAGTT CTCTTGTGTA CTA 751 |||||||||| |||||||||| |||||||||| |||||||||| ||| CTTTTTATTT TTTTTAACCT ATTTTGAGTT CTCTTGTGTA CTA 523 hqPGS_C09HBa0033H16.1-_SGN-E287327+ (1273 751) ******************************************************************************** EST sequence 47 +strand 540 n (File: SGN-E357825+) 1 CCCAATCTCC AATGGCAAAA TCCACAAAAA TTCTCTCATC AATCCTCATT CTCTTCTTCA 61 TTTTCAGTCT ATTTTCTTCA TCAAACGCAT TAGGCGGAAA GCTCGGCGGA AGAACACAAA 121 TCAAAAACGT GAAAACAAAT CAGGAAATTC AAGATCTAGG TAAGTACTGT GTCGAAGAAC 181 ACAACAGAGA TTTGCGGCAT ATCAATGGTG CTTTGAGTTC TTTATTGAGT TTTTCTCAAG 241 TTGTTGAAGC AGAAAAACAA GTTGTTTCTG GTGTTAAATA TTATCTAAAA ATCTCAGCTA 301 TTGTTAAATC ATCTAGCTCA CCAAAATTGT TCGATGCTGT TGTTGTTGTT AAAGCTTGGG 361 AGAAGAAGAA GGAATTGCTT ACGTTTTCTC CTTCTCCTTC ACCGGCTACA AAGTGAATTT 421 TCGATGGTTG ATAGTGGCTA AAAGTTAAAA CTTCTAGTAG TGCTAATGTT GTTTAATCTA 481 ATTTTGAAGT ACTTTAATTT GTAGCCTTTT TATTTTTTTT AACCTATTTT GAGTTCTCTT Predicted gene structure (within gDNA segment 1898 to 149): Exon 1 1298 759 ( 540 n); cDNA 1 540 ( 540 n); score: 1.000 MATCH C09HBa0033H16.1- SGN-E357825+ 1.000 540 1.000 C PGS_C09HBa0033H16.1-_SGN-E357825+ (1298 759) Alignment (genomic DNA sequence = upper lines): CCCAATCTCC AATGGCAAAA TCCACAAAAA TTCTCTCATC AATCCTCATT CTCTTCTTCA 1239 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCAATCTCC AATGGCAAAA TCCACAAAAA TTCTCTCATC AATCCTCATT CTCTTCTTCA 60 TTTTCAGTCT ATTTTCTTCA TCAAACGCAT TAGGCGGAAA GCTCGGCGGA AGAACACAAA 1179 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCAGTCT ATTTTCTTCA TCAAACGCAT TAGGCGGAAA GCTCGGCGGA AGAACACAAA 120 TCAAAAACGT GAAAACAAAT CAGGAAATTC AAGATCTAGG TAAGTACTGT GTCGAAGAAC 1119 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAAAACGT GAAAACAAAT CAGGAAATTC AAGATCTAGG TAAGTACTGT GTCGAAGAAC 180 ACAACAGAGA TTTGCGGCAT ATCAATGGTG CTTTGAGTTC TTTATTGAGT TTTTCTCAAG 1059 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAACAGAGA TTTGCGGCAT ATCAATGGTG CTTTGAGTTC TTTATTGAGT TTTTCTCAAG 240 TTGTTGAAGC AGAAAAACAA GTTGTTTCTG GTGTTAAATA TTATCTAAAA ATCTCAGCTA 999 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTTGAAGC AGAAAAACAA GTTGTTTCTG GTGTTAAATA TTATCTAAAA ATCTCAGCTA 300 TTGTTAAATC ATCTAGCTCA CCAAAATTGT TCGATGCTGT TGTTGTTGTT AAAGCTTGGG 939 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTTAAATC ATCTAGCTCA CCAAAATTGT TCGATGCTGT TGTTGTTGTT AAAGCTTGGG 360 AGAAGAAGAA GGAATTGCTT ACGTTTTCTC CTTCTCCTTC ACCGGCTACA AAGTGAATTT 879 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAGAAGAA GGAATTGCTT ACGTTTTCTC CTTCTCCTTC ACCGGCTACA AAGTGAATTT 420 TCGATGGTTG ATAGTGGCTA AAAGTTAAAA CTTCTAGTAG TGCTAATGTT GTTTAATCTA 819 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGATGGTTG ATAGTGGCTA AAAGTTAAAA CTTCTAGTAG TGCTAATGTT GTTTAATCTA 480 ATTTTGAAGT ACTTTAATTT GTAGCCTTTT TATTTTTTTT AACCTATTTT GAGTTCTCTT 759 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTTGAAGT ACTTTAATTT GTAGCCTTTT TATTTTTTTT AACCTATTTT GAGTTCTCTT 540 hqPGS_C09HBa0033H16.1-_SGN-E357825+ (1298 759) ******************************************************************************** EST sequence 40 +strand 413 n (File: SGN-E243257+) 1 CAATCTCCAA TGGCAAAATC CACAAAAATT CTCTCATCAA TCCTCATTCT CTTCTTCATT 61 TTCAGTCTAT TTTCTTCATC AAACGCATTA CGCGGAAAGC TCGGCGGAAG AACACAAATC 121 AAAAACGTGA AAACAAATCA GGAAATTCAA GATCTAGGTA AGTACTGTGT CGAAGAACAC 181 AACAGAGATT TGCGGCATAT CAATGGTGCT TTGAGTTCTT TATTGAGTTT TTCTCAAGTT 241 GTTGAAGCAG AAAAACAAGT TGTTTCTGGT GTTAAATATT ATCTAAAAAT CTCAGCTATT 301 GTTAAATCAT CTAGCTCACC AAAATCGTTC GATGCTGTTG TTGTTGGTAA AGCTTGTGAG 361 AAGAAGAAGG AATTGCTTAC GTATTCTCCT TCTCCTTCAC CGGCTACAAA GTG Predicted gene structure (within gDNA segment 1896 to 274): Exon 1 1296 884 ( 413 n); cDNA 1 413 ( 413 n); score: 0.988 MATCH C09HBa0033H16.1- SGN-E243257+ 0.988 413 1.000 C PGS_C09HBa0033H16.1-_SGN-E243257+ (1296 884) Alignment (genomic DNA sequence = upper lines): CAATCTCCAA TGGCAAAATC CACAAAAATT CTCTCATCAA TCCTCATTCT CTTCTTCATT 1237 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATCTCCAA TGGCAAAATC CACAAAAATT CTCTCATCAA TCCTCATTCT CTTCTTCATT 60 TTCAGTCTAT TTTCTTCATC AAACGCATTA GGCGGAAAGC TCGGCGGAAG AACACAAATC 1177 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| TTCAGTCTAT TTTCTTCATC AAACGCATTA CGCGGAAAGC TCGGCGGAAG AACACAAATC 120 AAAAACGTGA AAACAAATCA GGAAATTCAA GATCTAGGTA AGTACTGTGT CGAAGAACAC 1117 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAACGTGA AAACAAATCA GGAAATTCAA GATCTAGGTA AGTACTGTGT CGAAGAACAC 180 AACAGAGATT TGCGGCATAT CAATGGTGCT TTGAGTTCTT TATTGAGTTT TTCTCAAGTT 1057 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACAGAGATT TGCGGCATAT CAATGGTGCT TTGAGTTCTT TATTGAGTTT TTCTCAAGTT 240 GTTGAAGCAG AAAAACAAGT TGTTTCTGGT GTTAAATATT ATCTAAAAAT CTCAGCTATT 997 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGAAGCAG AAAAACAAGT TGTTTCTGGT GTTAAATATT ATCTAAAAAT CTCAGCTATT 300 GTTAAATCAT CTAGCTCACC AAAATTGTTC GATGCTGTTG TTGTTGTTAA AGCTTGGGAG 937 |||||||||| |||||||||| ||||| |||| |||||||||| |||||| ||| |||||| ||| GTTAAATCAT CTAGCTCACC AAAATCGTTC GATGCTGTTG TTGTTGGTAA AGCTTGTGAG 360 AAGAAGAAGG AATTGCTTAC GTTTTCTCCT TCTCCTTCAC CGGCTACAAA GTG 884 |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| ||| AAGAAGAAGG AATTGCTTAC GTATTCTCCT TCTCCTTCAC CGGCTACAAA GTG 413 hqPGS_C09HBa0033H16.1-_SGN-E243257+ (1296 884) ******************************************************************************** EST sequence 20 +strand 547 n (File: SGN-E300235+) 1 TTAGTGTTGG CTAATATCAT ACCAAAAATA TGTAGCAAAG GAAGCAAAAA ACTTCCACCA 61 GGTCCATCAC CATGGCCAAT TATTGGAAAC CTTCAGTTGT TAGGTGCAAA ACCTCATATA 121 TCACTAGCCA ATCTTGCAAA AAATTATGGT CCAATTATGA GTTTAAAGTT AGGTCAAATA 181 ACAACAATAG TCATTTCCTC ATCAACCATT GCAAAACAAG TCCTTAAAAC TCAAGATCAA 241 GCCTTTTCAT CTAGATTTGC TCCTAATGCT CTTCAAGCGC ACAACCATTA CAAATTTTCT 301 GTGGCATGGC TTCCTGTTTG TCCTCAATGG CGAACGCTTC GAAGAATATT GAACACTAAC 361 CTCTTATCTT CCAATAAGCT TGATGCAAAT CAACATCTAA GGTCTCAAAA GGTGAAACAA 421 TTGATTGATT ATTGTGACAA ATGTAGTCAA CAAGGTGAAG CTTTGGATAT AGGTCAAGTT 481 GTTTTCAAGA CTAGTCTTAA TTTGTTGTCA AACACACTTT TCTCCAAAGA TTTGGCTGAT 541 CCTTTTT Predicted gene structure (within gDNA segment 16934 to 19206): Exon 1 17754 18281 ( 528 n); cDNA 23 547 ( 525 n); score: 0.888 MATCH C09HBa0033H16.1+ SGN-E300235+ 0.888 528 0.965 C PGS_C09HBa0033H16.1+_SGN-E300235+ (17754 18281) Alignment (genomic DNA sequence = upper lines): CAAAAATATG TAGCAAAGGA AACAAAAAAC TTCCACCAGG TCCATCACCA TGGCCAATTA 17813 |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| CAAAAATATG TAGCAAAGGA AGCAAAAAAC TTCCACCAGG TCCATCACCA TGGCCAATTA 82 TTGGAAATCT TCACTTGTTA GGTACAAAAT CCCAGGTATC TCTAGCCAAT CTTGCAAAAA 17873 ||||||| || ||| |||||| ||| ||||| | || |||| ||||||||| |||||||||| TTGGAAACCT TCAGTTGTTA GGTGCAAAAC CTCATATATC ACTAGCCAAT CTTGCAAAAA 142 TTTATGGTCC AATTATGAGT TTAAAATTAG GACAAATAAC AACAGTGGTT ATTTCTTCAT 17933 ||||||||| |||||||||| ||||| |||| | |||||||| |||| | || ||||| |||| ATTATGGTCC AATTATGAGT TTAAAGTTAG GTCAAATAAC AACAATAGTC ATTTCCTCAT 202 CAACCATTGC AAAACAAGTC CTCAAAATTC AAGATCAAGC TTTTTCAACA TATAGATTTG 17993 |||||||||| |||||||||| || |||| || |||||||||| |||| || | |||||||| CAACCATTGC AAAACAAGTC CTTAAAACTC AAGATCAAGC CTTTT---CA TCTAGATTTG 259 TTCCTAATGC CATTCAAGCA CATAACTATA GCAAATTCTC TGTGGCATTT CTTCATGTTT 18053 ||||||||| ||||||| || ||| || |||||| || |||||||| |||| ||||| CTCCTAATGC TCTTCAAGCG CACAACCATT ACAAATTTTC TGTGGCATGG CTTCCTGTTT 319 GTCCTCAATG GCGAACGCTG CGCAAAATAT TGAACAAAAA TATCTTCTCT TCCAAAAGTC 18113 |||||||||| ||||||||| || | ||||| |||||| || |||| ||| ||||| | | GTCCTCAATG GCGAACGCTT CGAAGAATAT TGAACACTAA CCTCTTATCT TCCAATAAGC 379 TTGATGCAAA TCAACATCTA AGGTCTCAAA AAGTGAAAGA AATGATTGAT TATTGTGAGA 18173 |||||||||| |||||||||| |||||||||| | |||||| | | |||||||| |||||||| | TTGATGCAAA TCAACATCTA AGGTCTCAAA AGGTGAAACA ATTGATTGAT TATTGTGACA 439 AATGTAGTGA ACAAGGTAAA GTTGTGGATA TAGGTCAAGT TGCTTTCAAG ACTAGTCTTA 18233 |||||||| | ||||||| || | | |||||| |||||||||| || ||||||| |||||||||| AATGTAGTCA ACAAGGTGAA GCTTTGGATA TAGGTCAAGT TGTTTTCAAG ACTAGTCTTA 499 ATTTGTTGTC AAATACCCTT TTCTCCAAGG ATTTGGCTGA CCCTTTTT 18281 |||||||||| ||| || ||| |||||||| | |||||||||| ||||||| ATTTGTTGTC AAACACACTT TTCTCCAAAG ATTTGGCTGA TCCTTTTT 547 hqPGS_C09HBa0033H16.1+_SGN-E300235+ (17754 18281) ******************************************************************************** EST sequence 9 +strand 553 n (File: SGN-E305501+) 1 GATTACTATT CACTTGTGTT TGTGTCAATT TTAGTGTTGG CTAATATCAT AGCAAAAATA 61 TGTAGCAAAG GAAGCAAAAA ACTTCCACCA GGTCCATCAC CATGGCCAAT TATTGGAAAC 121 CTTCAGTTGT TAGGTGCAAA ACCTCATATA TCACTAGCCA ATCTTGCAAA AAATTATGGT 181 CCAATTATGA GTTTAAAGTT AGGTCAAATA ACAACAATAG TCATTTCCTC ATCAACCATT 241 GCAAAACAAG TCCTTAAAAC TCAAGATCAA GCCTTTTCAT CTAGATTTGC TCCTAATGCT 301 CTTCAAGCGC ACAACCATTA CAAATTTTCT GTGGCATGGC TTCCTGTTTG TCCTCAATGG 361 CGAACGCTTC TAAGAATATT GAACACTAAC CTCTTATCTT CCAATAAGCT TGATGCAAAT 421 CAACATCTAA GGTCTCAAAA GGTGAAACAA TTGATTGATT ATTGTGACAA ATGTAGTCGA 481 CAAGGTGAAG CTTTGGATAT AGGTCAAGTT GTTTTCAAGA CTAGTCTTAA TTTGTTGTCA 541 AACACACTTT TCT Predicted gene structure (within gDNA segment 16661 to 18966): Exon 1 17754 18257 ( 504 n); cDNA 53 553 ( 501 n); score: 0.883 MATCH C09HBa0033H16.1+ SGN-E305501+ 0.883 504 0.911 C PGS_C09HBa0033H16.1+_SGN-E305501+ (17754 18257) Alignment (genomic DNA sequence = upper lines): CAAAAATATG TAGCAAAGGA AACAAAAAAC TTCCACCAGG TCCATCACCA TGGCCAATTA 17813 |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| CAAAAATATG TAGCAAAGGA AGCAAAAAAC TTCCACCAGG TCCATCACCA TGGCCAATTA 112 TTGGAAATCT TCACTTGTTA GGTACAAAAT CCCAGGTATC TCTAGCCAAT CTTGCAAAAA 17873 ||||||| || ||| |||||| ||| ||||| | || |||| ||||||||| |||||||||| TTGGAAACCT TCAGTTGTTA GGTGCAAAAC CTCATATATC ACTAGCCAAT CTTGCAAAAA 172 TTTATGGTCC AATTATGAGT TTAAAATTAG GACAAATAAC AACAGTGGTT ATTTCTTCAT 17933 ||||||||| |||||||||| ||||| |||| | |||||||| |||| | || ||||| |||| ATTATGGTCC AATTATGAGT TTAAAGTTAG GTCAAATAAC AACAATAGTC ATTTCCTCAT 232 CAACCATTGC AAAACAAGTC CTCAAAATTC AAGATCAAGC TTTTTCAACA TATAGATTTG 17993 |||||||||| |||||||||| || |||| || |||||||||| |||| || | |||||||| CAACCATTGC AAAACAAGTC CTTAAAACTC AAGATCAAGC CTTTT---CA TCTAGATTTG 289 TTCCTAATGC CATTCAAGCA CATAACTATA GCAAATTCTC TGTGGCATTT CTTCATGTTT 18053 ||||||||| ||||||| || ||| || |||||| || |||||||| |||| ||||| CTCCTAATGC TCTTCAAGCG CACAACCATT ACAAATTTTC TGTGGCATGG CTTCCTGTTT 349 GTCCTCAATG GCGAACGCTG CGCAAAATAT TGAACAAAAA TATCTTCTCT TCCAAAAGTC 18113 |||||||||| ||||||||| | | ||||| |||||| || |||| ||| ||||| | | GTCCTCAATG GCGAACGCTT CTAAGAATAT TGAACACTAA CCTCTTATCT TCCAATAAGC 409 TTGATGCAAA TCAACATCTA AGGTCTCAAA AAGTGAAAGA AATGATTGAT TATTGTGAGA 18173 |||||||||| |||||||||| |||||||||| | |||||| | | |||||||| |||||||| | TTGATGCAAA TCAACATCTA AGGTCTCAAA AGGTGAAACA ATTGATTGAT TATTGTGACA 469 AATGTAGTGA ACAAGGTAAA GTTGTGGATA TAGGTCAAGT TGCTTTCAAG ACTAGTCTTA 18233 |||||||| ||||||| || | | |||||| |||||||||| || ||||||| |||||||||| AATGTAGTCG ACAAGGTGAA GCTTTGGATA TAGGTCAAGT TGTTTTCAAG ACTAGTCTTA 529 ATTTGTTGTC AAATACCCTT TTCT 18257 |||||||||| ||| || ||| |||| ATTTGTTGTC AAACACACTT TTCT 553 hqPGS_C09HBa0033H16.1+_SGN-E305501+ (17754 18257) ******************************************************************************** EST sequence 6 +strand 398 n (File: SGN-E310265+) 1 CTATGGATTA CTATACACTT GTGTTTGTGT CAATTTTAGT GTTGGCTAAT ATCATAGCAA 61 AAATATGTAT CAAAGGAAGC AAAAAACTTC CACCAGGTCC ATCACCATGG CCAATTATTG 121 GAAACCTTCA GTTGTTAGGT GCAAAACCTC ATATATCACT AGCCAATCTT GCAAAAAATT 181 ATGGTCCAAT TATGAGTTTA AAGTTAGGTC AAATAACAAC AATAGTCATT TCCTCATCAA 241 CCATTGCAAA ACAAGTCCTT AAAACTCAAG ATCAAGCCTT TTCATCTAGA TTTGCTCCTA 301 ATGCTCTTCA AGCGCACAAC CATTACAAAT TTTCTGTGGC ATGGCTTCCT GTTTGTCCTC 361 AATGGCGAAC GCTTCGAAGA ATATTGAACA CTAACCTC Predicted gene structure (within gDNA segment 16386 to 20468): Exon 1 17754 18097 ( 344 n); cDNA 58 398 ( 341 n); score: 0.875 MATCH C09HBa0033H16.1+ SGN-E310265+ 0.875 344 0.864 C PGS_C09HBa0033H16.1+_SGN-E310265+ (17754 18097) Alignment (genomic DNA sequence = upper lines): CAAAAATATG TAGCAAAGGA AACAAAAAAC TTCCACCAGG TCCATCACCA TGGCCAATTA 17813 |||||||||| || ||||||| | |||||||| |||||||||| |||||||||| |||||||||| CAAAAATATG TATCAAAGGA AGCAAAAAAC TTCCACCAGG TCCATCACCA TGGCCAATTA 117 TTGGAAATCT TCACTTGTTA GGTACAAAAT CCCAGGTATC TCTAGCCAAT CTTGCAAAAA 17873 ||||||| || ||| |||||| ||| ||||| | || |||| ||||||||| |||||||||| TTGGAAACCT TCAGTTGTTA GGTGCAAAAC CTCATATATC ACTAGCCAAT CTTGCAAAAA 177 TTTATGGTCC AATTATGAGT TTAAAATTAG GACAAATAAC AACAGTGGTT ATTTCTTCAT 17933 ||||||||| |||||||||| ||||| |||| | |||||||| |||| | || ||||| |||| ATTATGGTCC AATTATGAGT TTAAAGTTAG GTCAAATAAC AACAATAGTC ATTTCCTCAT 237 CAACCATTGC AAAACAAGTC CTCAAAATTC AAGATCAAGC TTTTTCAACA TATAGATTTG 17993 |||||||||| |||||||||| || |||| || |||||||||| |||| || | |||||||| CAACCATTGC AAAACAAGTC CTTAAAACTC AAGATCAAGC CTTTT---CA TCTAGATTTG 294 TTCCTAATGC CATTCAAGCA CATAACTATA GCAAATTCTC TGTGGCATTT CTTCATGTTT 18053 ||||||||| ||||||| || ||| || |||||| || |||||||| |||| ||||| CTCCTAATGC TCTTCAAGCG CACAACCATT ACAAATTTTC TGTGGCATGG CTTCCTGTTT 354 GTCCTCAATG GCGAACGCTG CGCAAAATAT TGAACAAAAA TATC 18097 |||||||||| ||||||||| || | ||||| |||||| || || GTCCTCAATG GCGAACGCTT CGAAGAATAT TGAACACTAA CCTC 398 hqPGS_C09HBa0033H16.1+_SGN-E310265+ (17754 18097) ******************************************************************************** EST sequence 24 +strand 574 n (File: SGN-E390674+) 1 AAATATGTAG CAAAGGAAGC AAAAAACTTC CACCAGGTCC ATCACCATGG CCAATTATTG 61 GAAACCTTCA GTTGTTAGGT GCAAAACCTC ATATATCACT AGCCAATCTT GCAAAAAATT 121 ATGGTCCAAT TATGAGTTTA AAGTTAGGTC AAATAACAAC AATAGTCATT TCCTCATCAA 181 CCATTGCAAA ACAAGTCCTT AAAACTCAAG ATCAAGCCTT TTCATCTAGA TTTGCTCCTA 241 ATGCTCTTCA AGCGCACAAC CATTACAAAT TTTCTGTGGC ATGGCTTCCT GTTTGTCCTC 301 AATGGCGAAC GCTTCGAAGA ATATTGAACA CTAACCTCTT ATCTTCCAAT AAGCTTGATG 361 CAAATCAACA TCTAAGGTCT CAAAAGGTGA AACAATTGAT TGATTATTGT GACAAATGTA 421 GTCAACAAGG TGAAGCTTTG GATATAGGTC AAGTTGTTTT CAAGACTAGT CTTAATTTGT 481 TGTCAAACAC ACTTTTCTCC AAGGATTTGG CTGATCCTTT TTCAGATTCA AAGGTAGAGT 541 TGAAGGAAGT TATATGGGGT ATCATGGCTG AGGT Predicted gene structure (within gDNA segment 17157 to 19726): Exon 1 17757 18331 ( 575 n); cDNA 1 572 ( 572 n); score: 0.885 MATCH C09HBa0033H16.1+ SGN-E390674+ 0.885 575 1.002 C PGS_C09HBa0033H16.1+_SGN-E390674+ (17757 18331) Alignment (genomic DNA sequence = upper lines): AAATATGTAG CAAAGGAAAC AAAAAACTTC CACCAGGTCC ATCACCATGG CCAATTATTG 17816 |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| AAATATGTAG CAAAGGAAGC AAAAAACTTC CACCAGGTCC ATCACCATGG CCAATTATTG 60 GAAATCTTCA CTTGTTAGGT ACAAAATCCC AGGTATCTCT AGCCAATCTT GCAAAAATTT 17876 |||| ||||| ||||||||| ||||| | | | |||| || |||||||||| ||||||| || GAAACCTTCA GTTGTTAGGT GCAAAACCTC ATATATCACT AGCCAATCTT GCAAAAAATT 120 ATGGTCCAAT TATGAGTTTA AAATTAGGAC AAATAACAAC AGTGGTTATT TCTTCATCAA 17936 |||||||||| |||||||||| || ||||| | |||||||||| | | || ||| || ||||||| ATGGTCCAAT TATGAGTTTA AAGTTAGGTC AAATAACAAC AATAGTCATT TCCTCATCAA 180 CCATTGCAAA ACAAGTCCTC AAAATTCAAG ATCAAGCTTT TTCAACATAT AGATTTGTTC 17996 |||||||||| ||||||||| |||| ||||| ||||||| || || ||| | ||||||| || CCATTGCAAA ACAAGTCCTT AAAACTCAAG ATCAAGCCTT TT---CATCT AGATTTGCTC 237 CTAATGCCAT TCAAGCACAT AACTATAGCA AATTCTCTGT GGCATTTCTT CATGTTTGTC 18056 ||||||| | |||||| || ||| || || |||| ||||| ||||| ||| | |||||||| CTAATGCTCT TCAAGCGCAC AACCATTACA AATTTTCTGT GGCATGGCTT CCTGTTTGTC 297 CTCAATGGCG AACGCTGCGC AAAATATTGA ACAAAAATAT CTTCTCTTCC AAAAGTCTTG 18116 |||||||||| |||||| || | |||||||| ||| || | ||| |||||| || | |||| CTCAATGGCG AACGCTTCGA AGAATATTGA ACACTAACCT CTTATCTTCC AATAAGCTTG 357 ATGCAAATCA ACATCTAAGG TCTCAAAAAG TGAAAGAAAT GATTGATTAT TGTGAGAAAT 18176 |||||||||| |||||||||| |||||||| | ||||| || | |||||||||| ||||| |||| ATGCAAATCA ACATCTAAGG TCTCAAAAGG TGAAACAATT GATTGATTAT TGTGACAAAT 417 GTAGTGAACA AGGTAAAGTT GTGGATATAG GTCAAGTTGC TTTCAAGACT AGTCTTAATT 18236 ||||| |||| |||| ||| | ||||||||| ||||||||| |||||||||| |||||||||| GTAGTCAACA AGGTGAAGCT TTGGATATAG GTCAAGTTGT TTTCAAGACT AGTCTTAATT 477 TGTTGTCAAA TACCCTTTTC TCCAAGGATT TGGCTGACCC TTTTTCAGAT TCGAAGGTGG 18296 |||||||||| || |||||| |||||||||| ||||||| || |||||||||| || ||||| | TGTTGTCAAA CACACTTTTC TCCAAGGATT TGGCTGATCC TTTTTCAGAT TCAAAGGTAG 537 AGTTGAAGGA AGTTATAAAG AATATCATTG ATGAG 18331 |||||||||| ||||||| | |||||| | |||| AGTTGAAGGA AGTTATATGG GGTATCATGG CTGAG 572 hqPGS_C09HBa0033H16.1+_SGN-E390674+ (17757 18331) ******************************************************************************** EST sequence 22 +strand 530 n (File: SGN-E390673+) 1 AAATATGTAG CAAAGGAAGC AAAAAACTTC CACCAGGTCC ATCACCATGG CCAATTATTG 61 GAAACCTTCA GTTGTTAGGT GCAAAACCTC ATATATCACT AGCCAATCTT GCAAAAAATT 121 ATGGTCCAAT TATGAGTTTA AAGTTAGGTC AAATAACAAC AATAGTCATT TCCTCATCAA 181 CCATTGCAAA ACAAGTCCTT AAAACTCAAG ATCAAGCCTT TTCATCTAGA TTTGCTCCTA 241 ATGCTCTTCA AGCGCACAAC CATTACAAAT TTTCTGTGGC ATGGCTTCCT GTTTGTCCTC 301 AATGGCGAAC GCTTCGAAGA ATATTGAACA CTAACCTCTT ATCTTCCAAT AAGCTTGATG 361 CAAATCAACA TCTAAGGTCT CAAAAGGTGA AACAATTGAT TGATTATTGT GACAAATGTA 421 GTCAACAAGG TGAAGCTTTG GATATAGGTC AAGTTGTTTT CAAGACTAGT CTTAATTTGT 481 TGTCAAACAC ACTTTTCTCC AAGGATTTGG CTGATCCTTT TTCAGATTCA Predicted gene structure (within gDNA segment 17157 to 19286): Exon 1 17757 18288 ( 532 n); cDNA 1 529 ( 529 n); score: 0.891 MATCH C09HBa0033H16.1+ SGN-E390673+ 0.891 532 1.004 C PGS_C09HBa0033H16.1+_SGN-E390673+ (17757 18288) Alignment (genomic DNA sequence = upper lines): AAATATGTAG CAAAGGAAAC AAAAAACTTC CACCAGGTCC ATCACCATGG CCAATTATTG 17816 |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| AAATATGTAG CAAAGGAAGC AAAAAACTTC CACCAGGTCC ATCACCATGG CCAATTATTG 60 GAAATCTTCA CTTGTTAGGT ACAAAATCCC AGGTATCTCT AGCCAATCTT GCAAAAATTT 17876 |||| ||||| ||||||||| ||||| | | | |||| || |||||||||| ||||||| || GAAACCTTCA GTTGTTAGGT GCAAAACCTC ATATATCACT AGCCAATCTT GCAAAAAATT 120 ATGGTCCAAT TATGAGTTTA AAATTAGGAC AAATAACAAC AGTGGTTATT TCTTCATCAA 17936 |||||||||| |||||||||| || ||||| | |||||||||| | | || ||| || ||||||| ATGGTCCAAT TATGAGTTTA AAGTTAGGTC AAATAACAAC AATAGTCATT TCCTCATCAA 180 CCATTGCAAA ACAAGTCCTC AAAATTCAAG ATCAAGCTTT TTCAACATAT AGATTTGTTC 17996 |||||||||| ||||||||| |||| ||||| ||||||| || || ||| | ||||||| || CCATTGCAAA ACAAGTCCTT AAAACTCAAG ATCAAGCCTT TT---CATCT AGATTTGCTC 237 CTAATGCCAT TCAAGCACAT AACTATAGCA AATTCTCTGT GGCATTTCTT CATGTTTGTC 18056 ||||||| | |||||| || ||| || || |||| ||||| ||||| ||| | |||||||| CTAATGCTCT TCAAGCGCAC AACCATTACA AATTTTCTGT GGCATGGCTT CCTGTTTGTC 297 CTCAATGGCG AACGCTGCGC AAAATATTGA ACAAAAATAT CTTCTCTTCC AAAAGTCTTG 18116 |||||||||| |||||| || | |||||||| ||| || | ||| |||||| || | |||| CTCAATGGCG AACGCTTCGA AGAATATTGA ACACTAACCT CTTATCTTCC AATAAGCTTG 357 ATGCAAATCA ACATCTAAGG TCTCAAAAAG TGAAAGAAAT GATTGATTAT TGTGAGAAAT 18176 |||||||||| |||||||||| |||||||| | ||||| || | |||||||||| ||||| |||| ATGCAAATCA ACATCTAAGG TCTCAAAAGG TGAAACAATT GATTGATTAT TGTGACAAAT 417 GTAGTGAACA AGGTAAAGTT GTGGATATAG GTCAAGTTGC TTTCAAGACT AGTCTTAATT 18236 ||||| |||| |||| ||| | ||||||||| ||||||||| |||||||||| |||||||||| GTAGTCAACA AGGTGAAGCT TTGGATATAG GTCAAGTTGT TTTCAAGACT AGTCTTAATT 477 TGTTGTCAAA TACCCTTTTC TCCAAGGATT TGGCTGACCC TTTTTCAGAT TC 18288 |||||||||| || |||||| |||||||||| ||||||| || |||||||||| || TGTTGTCAAA CACACTTTTC TCCAAGGATT TGGCTGATCC TTTTTCAGAT TC 529 hqPGS_C09HBa0033H16.1+_SGN-E390673+ (17757 18288) ******************************************************************************** EST sequence 30 +strand 527 n (File: SGN-E302472+) 1 AAATATGTAG CAAAGGAAGC AAAAAACTTC CACCAGGTCC ATCACCATGG CCAATTATTG 61 GAAACCTTCA GTTGTTAGGT GCAAAACCTC ATATATCACT AGCCAATCTT GCAAAAAATT 121 ATGGTCCAAT TATGAGTTTA AAGTTAGGTC AAATAACAAC AATAGTCATT TCCTCATCAA 181 CCATTGCAAA ACAAGTCCTT AAAACTCAAG ATCAAGCCTT TTCATCTAGA TTTGCTCCTA 241 ATGCTCTTCA AGCCCCACCA ACCATTACAA ATTTTCTGTG GCATGGCTTC CTGTTTGTCC 301 TCAATGGCGA ACGCCTTCGA AGAATATTGA ACACTAACCT CTTATCTTCC AATAAGCTTG 361 ATGCAAATCA ACATCTAAGG TCTCAAAAGG TGAAACCAAT TGATTGATTA TTGTGACAAA 421 TGTAGTCAAC AAGGTGAAGC TTTGGATATA GGTCAAGTTG TTTTCAAGAC TAGTCTTAAT 481 TTGTTGTCAA ACACACTTTT CTCCAAGGAT TTGGCTGATC CTTTTTC Predicted gene structure (within gDNA segment 17157 to 19216): Exon 1 17757 18282 ( 526 n); cDNA 1 527 ( 527 n); score: 0.871 MATCH C09HBa0033H16.1+ SGN-E302472+ 0.871 526 0.998 C PGS_C09HBa0033H16.1+_SGN-E302472+ (17757 18282) Alignment (genomic DNA sequence = upper lines): AAATATGTAG CAAAGGAAAC AAAAAACTTC CACCAGGTCC ATCACCATGG CCAATTATTG 17816 |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| AAATATGTAG CAAAGGAAGC AAAAAACTTC CACCAGGTCC ATCACCATGG CCAATTATTG 60 GAAATCTTCA CTTGTTAGGT ACAAAATCCC AGGTATCTCT AGCCAATCTT GCAAAAATTT 17876 |||| ||||| ||||||||| ||||| | | | |||| || |||||||||| ||||||| || GAAACCTTCA GTTGTTAGGT GCAAAACCTC ATATATCACT AGCCAATCTT GCAAAAAATT 120 ATGGTCCAAT TATGAGTTTA AAATTAGGAC AAATAACAAC AGTGGTTATT TCTTCATCAA 17936 |||||||||| |||||||||| || ||||| | |||||||||| | | || ||| || ||||||| ATGGTCCAAT TATGAGTTTA AAGTTAGGTC AAATAACAAC AATAGTCATT TCCTCATCAA 180 CCATTGCAAA ACAAGTCCTC AAAATTCAAG ATCAAGCTTT TTCAACATAT AGATTTGTTC 17996 |||||||||| ||||||||| |||| ||||| ||||||| || || ||| | ||||||| || CCATTGCAAA ACAAGTCCTT AAAACTCAAG ATCAAGCCTT TT---CATCT AGATTTGCTC 237 CTAATGCCAT TCAAG-CACA -TAACTATAG CAAATTCTCT GTGGCATTTC TTCATGTTTG 18054 ||||||| | ||||| | || ||| || |||||| ||| ||||||| | ||| |||||| CTAATGCTCT TCAAGCCCCA CCAACCATTA CAAATTTTCT GTGGCATGGC TTCCTGTTTG 297 TCCTCAATGG CGAACG-CTG CGCAAAATAT TGAACAAAAA TATCTTCTCT TCCAAAAGTC 18113 |||||||||| |||||| || || | ||||| |||||| || |||| ||| ||||| | | TCCTCAATGG CGAACGCCTT CGAAGAATAT TGAACACTAA CCTCTTATCT TCCAATAAGC 357 TTGATGCAAA TCAACATCTA AGGTCTCAAA AAGTGAAA-G AAATGATTGA TTATTGTGAG 18172 |||||||||| |||||||||| |||||||||| | |||||| || ||||||| ||||||||| TTGATGCAAA TCAACATCTA AGGTCTCAAA AGGTGAAACC AATTGATTGA TTATTGTGAC 417 AAATGTAGTG AACAAGGTAA AGTTGTGGAT ATAGGTCAAG TTGCTTTCAA GACTAGTCTT 18232 ||||||||| |||||||| | || | ||||| |||||||||| ||| |||||| |||||||||| AAATGTAGTC AACAAGGTGA AGCTTTGGAT ATAGGTCAAG TTGTTTTCAA GACTAGTCTT 477 AATTTGTTGT CAAATACCCT TTTCTCCAAG GATTTGGCTG ACCCTTTTTC 18282 |||||||||| |||| || || |||||||||| |||||||||| | |||||||| AATTTGTTGT CAAACACACT TTTCTCCAAG GATTTGGCTG ATCCTTTTTC 527 hqPGS_C09HBa0033H16.1+_SGN-E302472+ (17757 18282) ******************************************************************************** EST sequence 2 +strand 449 n (File: SGN-E294327+) 1 AATATGTAGC AAAGGAAGCA AAAAACTTCC ACCAGGTCCA TCACCATGGC CAATTATTGG 61 AAACCTTCAG TTGTTAGGTG CAAAACCTCA TATATCACTA GCCAATCTTG CAAAAAATTA 121 TGGTCCAATT ATGAGTTTAA AGTTAGGTCA AATAACAACA ATAGTCATTT CCTCATCAAC 181 CATTGCAAAA CAAGTCCTTA AAACTCAAGA TCAAGCCTTT TCATCTAGAT TTGCTCCTAA 241 TGCTCTTCAA GCGCACAACC ATTACAAATT TTCTGTGGCA TGGCTTCCTG TTTGTCCTCA 301 ATGGCGAACG CTTCGAAGAA TATTGAACAC TAACCTCTTA TCTTCCAATA AGCTTGATGC 361 AAATCAACAT CTAAGGTCTC AAAAGGTGAA ACAATTGATT GATTATTGTG ACAAATGTAG 421 TCAACAAGGT GAAGCTTTGG ATATAGGTC Predicted gene structure (within gDNA segment 17158 to 19161): Exon 1 17758 18209 ( 452 n); cDNA 1 449 ( 449 n); score: 0.881 MATCH C09HBa0033H16.1+ SGN-E294327+ 0.881 452 1.007 C PGS_C09HBa0033H16.1+_SGN-E294327+ (17758 18209) Alignment (genomic DNA sequence = upper lines): AATATGTAGC AAAGGAAACA AAAAACTTCC ACCAGGTCCA TCACCATGGC CAATTATTGG 17817 |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| AATATGTAGC AAAGGAAGCA AAAAACTTCC ACCAGGTCCA TCACCATGGC CAATTATTGG 60 AAATCTTCAC TTGTTAGGTA CAAAATCCCA GGTATCTCTA GCCAATCTTG CAAAAATTTA 17877 ||| ||||| ||||||||| ||||| | || |||| ||| |||||||||| |||||| ||| AAACCTTCAG TTGTTAGGTG CAAAACCTCA TATATCACTA GCCAATCTTG CAAAAAATTA 120 TGGTCCAATT ATGAGTTTAA AATTAGGACA AATAACAACA GTGGTTATTT CTTCATCAAC 17937 |||||||||| |||||||||| | ||||| || |||||||||| | || |||| | |||||||| TGGTCCAATT ATGAGTTTAA AGTTAGGTCA AATAACAACA ATAGTCATTT CCTCATCAAC 180 CATTGCAAAA CAAGTCCTCA AAATTCAAGA TCAAGCTTTT TCAACATATA GATTTGTTCC 17997 |||||||||| |||||||| | ||| |||||| |||||| ||| | ||| || |||||| ||| CATTGCAAAA CAAGTCCTTA AAACTCAAGA TCAAGCCTTT T---CATCTA GATTTGCTCC 237 TAATGCCATT CAAGCACATA ACTATAGCAA ATTCTCTGTG GCATTTCTTC ATGTTTGTCC 18057 |||||| || ||||| || | || || ||| ||| |||||| |||| |||| ||||||||| TAATGCTCTT CAAGCGCACA ACCATTACAA ATTTTCTGTG GCATGGCTTC CTGTTTGTCC 297 TCAATGGCGA ACGCTGCGCA AAATATTGAA CAAAAATATC TTCTCTTCCA AAAGTCTTGA 18117 |||||||||| ||||| || | ||||||||| || || || || ||||||| | | ||||| TCAATGGCGA ACGCTTCGAA GAATATTGAA CACTAACCTC TTATCTTCCA ATAAGCTTGA 357 TGCAAATCAA CATCTAAGGT CTCAAAAAGT GAAAGAAATG ATTGATTATT GTGAGAAATG 18177 |||||||||| |||||||||| ||||||| || |||| || || |||||||||| |||| ||||| TGCAAATCAA CATCTAAGGT CTCAAAAGGT GAAACAATTG ATTGATTATT GTGACAAATG 417 TAGTGAACAA GGTAAAGTTG TGGATATAGG TC 18209 |||| ||||| ||| ||| | |||||||||| || TAGTCAACAA GGTGAAGCTT TGGATATAGG TC 449 hqPGS_C09HBa0033H16.1+_SGN-E294327+ (17758 18209) ******************************************************************************** EST sequence 4 +strand 449 n (File: SGN-E294328+) 1 AATATGTAGC AAAGGAAGCA AAAAACTTCC ACCAGGTCCA TCACCATGGC CAATTATTGG 61 AAACCTTCAG TTGTTAGGTG CAAAACCTCA TATATCACTA GCCAATCTTG CAAAAAATTA 121 TGGTCCAATT ATGAGTTTAA AGTTAGGTCA AATAACAACA ATAGTCATTT CCTCATCAAC 181 CATTGCAAAA CAAGTCCTTA AAACTCAAGA TCAAGCCTTT TCATCTAGAT TTGCTCCTAA 241 TGCTCTTCAA GCGCACAACC ATTACAAATT TTCTGTGGCA TGGCTTCCTG TTTGTCCTCA 301 ATGGCGAACG CTTCGAAGAA TATTGAACAC TAACCTCTTA TCTTCCAATA AGCTTGATGC 361 AAATCAACAT CTAAGGTCTC AAAAGGTGAA ACAATTGATT GATTATTGTG ACAAATGTAG 421 TCAACAAGGT GAAGCTTTGG ATATAGGTC Predicted gene structure (within gDNA segment 17158 to 19161): Exon 1 17758 18209 ( 452 n); cDNA 1 449 ( 449 n); score: 0.881 MATCH C09HBa0033H16.1+ SGN-E294328+ 0.881 452 1.007 C PGS_C09HBa0033H16.1+_SGN-E294328+ (17758 18209) Alignment (genomic DNA sequence = upper lines): AATATGTAGC AAAGGAAACA AAAAACTTCC ACCAGGTCCA TCACCATGGC CAATTATTGG 17817 |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| AATATGTAGC AAAGGAAGCA AAAAACTTCC ACCAGGTCCA TCACCATGGC CAATTATTGG 60 AAATCTTCAC TTGTTAGGTA CAAAATCCCA GGTATCTCTA GCCAATCTTG CAAAAATTTA 17877 ||| ||||| ||||||||| ||||| | || |||| ||| |||||||||| |||||| ||| AAACCTTCAG TTGTTAGGTG CAAAACCTCA TATATCACTA GCCAATCTTG CAAAAAATTA 120 TGGTCCAATT ATGAGTTTAA AATTAGGACA AATAACAACA GTGGTTATTT CTTCATCAAC 17937 |||||||||| |||||||||| | ||||| || |||||||||| | || |||| | |||||||| TGGTCCAATT ATGAGTTTAA AGTTAGGTCA AATAACAACA ATAGTCATTT CCTCATCAAC 180 CATTGCAAAA CAAGTCCTCA AAATTCAAGA TCAAGCTTTT TCAACATATA GATTTGTTCC 17997 |||||||||| |||||||| | ||| |||||| |||||| ||| | ||| || |||||| ||| CATTGCAAAA CAAGTCCTTA AAACTCAAGA TCAAGCCTTT T---CATCTA GATTTGCTCC 237 TAATGCCATT CAAGCACATA ACTATAGCAA ATTCTCTGTG GCATTTCTTC ATGTTTGTCC 18057 |||||| || ||||| || | || || ||| ||| |||||| |||| |||| ||||||||| TAATGCTCTT CAAGCGCACA ACCATTACAA ATTTTCTGTG GCATGGCTTC CTGTTTGTCC 297 TCAATGGCGA ACGCTGCGCA AAATATTGAA CAAAAATATC TTCTCTTCCA AAAGTCTTGA 18117 |||||||||| ||||| || | ||||||||| || || || || ||||||| | | ||||| TCAATGGCGA ACGCTTCGAA GAATATTGAA CACTAACCTC TTATCTTCCA ATAAGCTTGA 357 TGCAAATCAA CATCTAAGGT CTCAAAAAGT GAAAGAAATG ATTGATTATT GTGAGAAATG 18177 |||||||||| |||||||||| ||||||| || |||| || || |||||||||| |||| ||||| TGCAAATCAA CATCTAAGGT CTCAAAAGGT GAAACAATTG ATTGATTATT GTGACAAATG 417 TAGTGAACAA GGTAAAGTTG TGGATATAGG TC 18209 |||| ||||| ||| ||| | |||||||||| || TAGTCAACAA GGTGAAGCTT TGGATATAGG TC 449 hqPGS_C09HBa0033H16.1+_SGN-E294328+ (17758 18209) ******************************************************************************** EST sequence 18 +strand 621 n (File: SGN-E291872+) 1 ATATGTAGCA AAGGAAGCAA AAAACTTCCA CCAGGTCCAT CACCATGGCC AATTATTGGA 61 AACCTTCAGT TGTTAGGTGC AAAACCTCAT ATATCACTAG CCAATCTTGC AAAAAATTAT 121 GGTCCAATTA TGAGTTTAAA GTTAGGTCAA ATAACAACAA TAGTCATTTC CTCATCAACC 181 ATTGCAAAAC AAGTCCTTAA AACTCAAGAT CAAGCCTTTT CATCTAGATT TGCTCCTAAT 241 GCTCTTCAAG CGCACAACCA TTACAAATTT TCTGTGGCAT GGCTTCCTGT TTGTCCTCAA 301 TGGCGAACGC TTCGAAGAAT ATTGAACACT AACCTCTTAT CTTCCAATAA GCTTGATGCA 361 AATCAACATC TAAGGTCTCA AAAGGTGAAA CAATTGATTG ATTATTGTGA CAAATGTAGT 421 CAACAAGGTG AAGCTTTGGA TATAGGTCAA GTTGTTTTCA AGACTAGTCT TAATTTGTTG 481 TCAAACACAC TTTTCTCCAA AGATTTGGCT GATCCTTTTT CAGATTCAAA GGTAGAGTTG 541 AAGGAAGTTA TATGGGGTAT CATGGCTGAG GTAGGGAAGC CTAATTTAGT AGATTTTTTC 601 CCCATACTTG AAAAAATTGA T Predicted gene structure (within gDNA segment 17159 to 20216): Exon 1 17759 18382 ( 624 n); cDNA 1 621 ( 621 n); score: 0.878 MATCH C09HBa0033H16.1+ SGN-E291872+ 0.878 624 1.005 C PGS_C09HBa0033H16.1+_SGN-E291872+ (17759 18382) Alignment (genomic DNA sequence = upper lines): ATATGTAGCA AAGGAAACAA AAAACTTCCA CCAGGTCCAT CACCATGGCC AATTATTGGA 17818 |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| ATATGTAGCA AAGGAAGCAA AAAACTTCCA CCAGGTCCAT CACCATGGCC AATTATTGGA 60 AATCTTCACT TGTTAGGTAC AAAATCCCAG GTATCTCTAG CCAATCTTGC AAAAATTTAT 17878 || ||||| | |||||||| | |||| | || |||| |||| |||||||||| ||||| |||| AACCTTCAGT TGTTAGGTGC AAAACCTCAT ATATCACTAG CCAATCTTGC AAAAAATTAT 120 GGTCCAATTA TGAGTTTAAA ATTAGGACAA ATAACAACAG TGGTTATTTC TTCATCAACC 17938 |||||||||| |||||||||| ||||| ||| ||||||||| | || ||||| ||||||||| GGTCCAATTA TGAGTTTAAA GTTAGGTCAA ATAACAACAA TAGTCATTTC CTCATCAACC 180 ATTGCAAAAC AAGTCCTCAA AATTCAAGAT CAAGCTTTTT CAACATATAG ATTTGTTCCT 17998 |||||||||| ||||||| || || ||||||| ||||| |||| ||| ||| ||||| |||| ATTGCAAAAC AAGTCCTTAA AACTCAAGAT CAAGCCTTTT ---CATCTAG ATTTGCTCCT 237 AATGCCATTC AAGCACATAA CTATAGCAAA TTCTCTGTGG CATTTCTTCA TGTTTGTCCT 18058 ||||| ||| |||| || || | || |||| || ||||||| ||| |||| |||||||||| AATGCTCTTC AAGCGCACAA CCATTACAAA TTTTCTGTGG CATGGCTTCC TGTTTGTCCT 297 CAATGGCGAA CGCTGCGCAA AATATTGAAC AAAAATATCT TCTCTTCCAA AAGTCTTGAT 18118 |||||||||| |||| || | |||||||||| | || ||| | |||||||| | |||||| CAATGGCGAA CGCTTCGAAG AATATTGAAC ACTAACCTCT TATCTTCCAA TAAGCTTGAT 357 GCAAATCAAC ATCTAAGGTC TCAAAAAGTG AAAGAAATGA TTGATTATTG TGAGAAATGT 18178 |||||||||| |||||||||| |||||| ||| ||| || ||| |||||||||| ||| |||||| GCAAATCAAC ATCTAAGGTC TCAAAAGGTG AAACAATTGA TTGATTATTG TGACAAATGT 417 AGTGAACAAG GTAAAGTTGT GGATATAGGT CAAGTTGCTT TCAAGACTAG TCTTAATTTG 18238 ||| |||||| || ||| | | |||||||||| ||||||| || |||||||||| |||||||||| AGTCAACAAG GTGAAGCTTT GGATATAGGT CAAGTTGTTT TCAAGACTAG TCTTAATTTG 477 TTGTCAAATA CCCTTTTCTC CAAGGATTTG GCTGACCCTT TTTCAGATTC GAAGGTGGAG 18298 |||||||| | | |||||||| ||| |||||| ||||| |||| |||||||||| ||||| ||| TTGTCAAACA CACTTTTCTC CAAAGATTTG GCTGATCCTT TTTCAGATTC AAAGGTAGAG 537 TTGAAGGAAG TTATAAAGAA TATCATTGAT GAGATGGGGA ATCCTAACCT AGTGGATTTT 18358 |||||||||| ||||| | |||||| | | ||| | |||| | ||||| | ||| |||||| TTGAAGGAAG TTATATGGGG TATCATGGCT GAGGTAGGGA AGCCTAATTT AGTAGATTTT 597 TTCCCTATAC TTGAAAAGTT TGAT 18382 ||||| |||| ||||||| | |||| TTCCCCATAC TTGAAAAAAT TGAT 621 hqPGS_C09HBa0033H16.1+_SGN-E291872+ (17759 18382) ******************************************************************************** EST sequence 16 +strand 578 n (File: SGN-E291937+) 1 ATATGTAGCA AAGGAAGCAA AAAACTTCCA CCAGGTCCAT CACCATGGCC AATTATTGGA 61 AACCTTCAGT TGTTAGGTGC AAAACCTCAT ATATCACTAG CCAATCTTGC AAAAAATTAT 121 GGTCCAATTA TGAGTTTAAA GTTAGGGNNN TNNCCCNAAA AATAACAACA ATAGTCATTT 181 CCTCATCAAC CATTGCAAAA CAAGTCCTTA AAACTCAAGA TCAAGCCTTT TCATCTAGAT 241 TTGCTCCTAT TGCTCTTCAA GCGCACAACC ATTACAAATT TTCTGTGGCA TGGCTTCCTG 301 CCTGTCCTCA ATGGCAAACG CTTCGAAGAA TATTGAACAC TAACCTCTTA TCTTCCAATA 361 AGCTTGATGC AAATCAACAT CTAAGGTCTC AAAAGGTGAA ACAATTGATT GATTATTGTG 421 ACAAATGTAG TCAACAAGGT GAAGCTTTGG ATATAGGTCA AGTTGTTTTC AAGACTAGTC 481 TTAATTTGTT GTCAAACACA CTTTTCTCCA AGGATTTGGC TGATCCTTTT TCAGATTCAA 541 AGGTAGAGTT GAAGGAAGTT ATATGGGGTA TCATGGCT Predicted gene structure (within gDNA segment 17159 to 19676): Exon 1 17759 18324 ( 566 n); cDNA 1 574 ( 574 n); score: 0.831 MATCH C09HBa0033H16.1+ SGN-E291937+ 0.831 566 0.979 C PGS_C09HBa0033H16.1+_SGN-E291937+ (17759 18324) Alignment (genomic DNA sequence = upper lines): ATATGTAGCA AAGGAAACAA AAAACTTCCA CCAGGTCCAT CACCATGGCC AATTATTGGA 17818 |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| ATATGTAGCA AAGGAAGCAA AAAACTTCCA CCAGGTCCAT CACCATGGCC AATTATTGGA 60 AATCTTCACT TGTTAGGTAC AAAATCCCAG GTATCTCTAG CCAATCTTGC AAAAATTTAT 17878 || ||||| | |||||||| | |||| | || |||| |||| |||||||||| ||||| |||| AACCTTCAGT TGTTAGGTGC AAAACCTCAT ATATCACTAG CCAATCTTGC AAAAAATTAT 120 GGTCCAATTA TGAGTTTAAA ATTA-GG--- --A--C---A AATAACAACA GTGGTTATTT 17927 |||||||||| |||||||||| ||| || | | |||||||||| | || |||| GGTCCAATTA TGAGTTTAAA GTTAGGGNNN TNNCCCNAAA AATAACAACA ATAGTCATTT 180 CTTCATCAAC CATTGCAAAA CAAGTCCTCA AAATTCAAGA TCAAGCTTTT TCAACATATA 17987 | |||||||| |||||||||| |||||||| | ||| |||||| |||||| ||| | ||| || CCTCATCAAC CATTGCAAAA CAAGTCCTTA AAACTCAAGA TCAAGCCTTT T---CATCTA 237 GATTTGTTCC TAATGCCATT CAAGCACATA ACTATAGCAA ATTCTCTGTG GCATTTCTTC 18047 |||||| ||| || ||| || ||||| || | || || ||| ||| |||||| |||| |||| GATTTGCTCC TATTGCTCTT CAAGCGCACA ACCATTACAA ATTTTCTGTG GCATGGCTTC 297 ATGTTTGTCC TCAATGGCGA ACGCTGCGCA AAATATTGAA CAAAAATATC TTCTCTTCCA 18107 || ||||| |||||||| | ||||| || | ||||||||| || || || || ||||||| CTGCCTGTCC TCAATGGCAA ACGCTTCGAA GAATATTGAA CACTAACCTC TTATCTTCCA 357 AAAGTCTTGA TGCAAATCAA CATCTAAGGT CTCAAAAAGT GAAAGAAATG ATTGATTATT 18167 | | ||||| |||||||||| |||||||||| ||||||| || |||| || || |||||||||| ATAAGCTTGA TGCAAATCAA CATCTAAGGT CTCAAAAGGT GAAACAATTG ATTGATTATT 417 GTGAGAAATG TAGTGAACAA GGTAAAGTTG TGGATATAGG TCAAGTTGCT TTCAAGACTA 18227 |||| ||||| |||| ||||| ||| ||| | |||||||||| |||||||| | |||||||||| GTGACAAATG TAGTCAACAA GGTGAAGCTT TGGATATAGG TCAAGTTGTT TTCAAGACTA 477 GTCTTAATTT GTTGTCAAAT ACCCTTTTCT CCAAGGATTT GGCTGACCCT TTTTCAGATT 18287 |||||||||| ||||||||| || ||||||| |||||||||| |||||| ||| |||||||||| GTCTTAATTT GTTGTCAAAC ACACTTTTCT CCAAGGATTT GGCTGATCCT TTTTCAGATT 537 CGAAGGTGGA GTTGAAGGAA GTTATAAAGA ATATCAT 18324 | ||||| || |||||||||| |||||| | |||||| CAAAGGTAGA GTTGAAGGAA GTTATATGGG GTATCAT 574 hqPGS_C09HBa0033H16.1+_SGN-E291937+ (17759 18324) ******************************************************************************** EST sequence 26 +strand 606 n (File: SGN-E301544+) 1 TTATTGGAAA CCTTCAGTTG TTAGGTGCAA AACCTCATAT ATCACTAGCC AATCTTGCAA 61 AAAATTATGG TCCAATTATG AGTTTAAAGT TAGGTCAAAT AACAACAATA GTCATTTCCT 121 CATCAACCAT TGCAAAACAA GTCCTTAAAA CTCAAGATCA AGCCTTTTCA TCTAGATTTG 181 CTCCTAATGC TCTTCAAGCG CACAACCATT ACAAATTTTC TGTGGCATGG CTTCCTGTTT 241 GTCCTCAATG GCGAACGCTT CGAAGAATAT TGAACACTAA CCTCTTATCT TCCAATAAGC 301 TTGATGCAAA TCAACATCTA AGGTCTCAAA AGGTGAAACA ATTGATTGAT TATTGTGACA 361 AATGTAGTCA ACAAGGTGAA GCTTTGGATA TAGGTCAAGT TGTTTTCAAG ACTAGTCTTA 421 ATTTGTTGTC AAACACACTT TTCTCCAAGG ATTTGGCTGA TCCTTTTTCA GATTCAAAGG 481 TAGAGTTGAA GGAAGTTATA TGGGGTATCA TGGCTGAGGT AGGGAAGCCT AATTTAGTAG 541 ATTTTTTCCC CATACTTGAA AAAATTGATC TTCAAGGAAT AAGACGTCGC GCTATCATTC 601 ATTTTG Predicted gene structure (within gDNA segment 16815 to 20586): Exon 1 17811 18419 ( 609 n); cDNA 1 606 ( 606 n); score: 0.867 MATCH C09HBa0033H16.1+ SGN-E301544+ 0.867 609 1.005 C PGS_C09HBa0033H16.1+_SGN-E301544+ (17811 18419) Alignment (genomic DNA sequence = upper lines): TTATTGGAAA TCTTCACTTG TTAGGTACAA AATCCCAGGT ATCTCTAGCC AATCTTGCAA 17870 |||||||||| ||||| ||| |||||| ||| || | || | ||| |||||| |||||||||| TTATTGGAAA CCTTCAGTTG TTAGGTGCAA AACCTCATAT ATCACTAGCC AATCTTGCAA 60 AAATTTATGG TCCAATTATG AGTTTAAAAT TAGGACAAAT AACAACAGTG GTTATTTCTT 17930 ||| |||||| |||||||||| |||||||| | |||| ||||| ||||||| | || ||||| | AAAATTATGG TCCAATTATG AGTTTAAAGT TAGGTCAAAT AACAACAATA GTCATTTCCT 120 CATCAACCAT TGCAAAACAA GTCCTCAAAA TTCAAGATCA AGCTTTTTCA ACATATAGAT 17990 |||||||||| |||||||||| ||||| |||| ||||||||| ||| |||| ||| ||||| CATCAACCAT TGCAAAACAA GTCCTTAAAA CTCAAGATCA AGCCTTTT-- -CATCTAGAT 177 TTGTTCCTAA TGCCATTCAA GCACATAACT ATAGCAAATT CTCTGTGGCA TTTCTTCATG 18050 ||| |||||| ||| ||||| || || ||| || |||||| ||||||||| | |||| || TTGCTCCTAA TGCTCTTCAA GCGCACAACC ATTACAAATT TTCTGTGGCA TGGCTTCCTG 237 TTTGTCCTCA ATGGCGAACG CTGCGCAAAA TATTGAACAA AAATATCTTC TCTTCCAAAA 18110 |||||||||| |||||||||| || || | || ||||||||| || |||| |||||||| | TTTGTCCTCA ATGGCGAACG CTTCGAAGAA TATTGAACAC TAACCTCTTA TCTTCCAATA 297 GTCTTGATGC AAATCAACAT CTAAGGTCTC AAAAAGTGAA AGAAATGATT GATTATTGTG 18170 |||||||| |||||||||| |||||||||| |||| ||||| | || ||||| |||||||||| AGCTTGATGC AAATCAACAT CTAAGGTCTC AAAAGGTGAA ACAATTGATT GATTATTGTG 357 AGAAATGTAG TGAACAAGGT AAAGTTGTGG ATATAGGTCA AGTTGCTTTC AAGACTAGTC 18230 | |||||||| | |||||||| ||| | ||| |||||||||| ||||| |||| |||||||||| ACAAATGTAG TCAACAAGGT GAAGCTTTGG ATATAGGTCA AGTTGTTTTC AAGACTAGTC 417 TTAATTTGTT GTCAAATACC CTTTTCTCCA AGGATTTGGC TGACCCTTTT TCAGATTCGA 18290 |||||||||| |||||| || |||||||||| |||||||||| ||| |||||| |||||||| | TTAATTTGTT GTCAAACACA CTTTTCTCCA AGGATTTGGC TGATCCTTTT TCAGATTCAA 477 AGGTGGAGTT GAAGGAAGTT ATAAAGAATA TCATTGATGA GATGGGGAAT CCTAACCTAG 18350 |||| ||||| |||||||||| ||| | || |||| | ||| | | ||||| ||||| ||| AGGTAGAGTT GAAGGAAGTT ATATGGGGTA TCATGGCTGA GGTAGGGAAG CCTAATTTAG 537 TGGATTTTTT CCCTATACTT GAAAAGTTTG ATCTTCAAGG AATAAAGCGT CGTACAACCA 18410 | |||||||| ||| |||||| ||||| ||| |||||||||| ||||| ||| || | | || TAGATTTTTT CCCCATACTT GAAAAAATTG ATCTTCAAGG AATAAGACGT CGCGCTATCA 597 TTCATATTG 18419 ||||| ||| TTCATTTTG 606 hqPGS_C09HBa0033H16.1+_SGN-E301544+ (17811 18419) ******************************************************************************** EST sequence 13 +strand 655 n (File: SGN-E335463+) 1 ACAACAATAG TCATTTCCTC ATCAACCATT GCAAAACAAG TCCTTAAAAC TCAAGATCAA 61 GCCTTTTCAT CTAGATTTGC TCCTAATGCT CTTCAAGCGC ACAACCATTA CAAATTTTCT 121 GTGGCATGGC TTCCTGTTTG TCCTCAATGG CGAACGCTTC GAAGAATATT GAACACTAAC 181 CTCTTATCTT CCAATAAGCT TGATGCAAAT CAACATCTAA GGTCTCAAAA GGTGAAACAA 241 TTGATTGATT ATTGTGACAA ATGTAGTCAA CAAGGTGAAG CTTTGGATAT AGGTCAAGTT 301 GTTTTCAAGA CTAGTCTTAA TTTGTTGTCA AACACACTTT TCTCCAAGGA TTTGGCTGAT 361 CCTTTTTCAG ATTCAAAGGT AGAGTTGAAG GAAGTTATAT GGGGTATCAT GGCTGAGGTA 421 GGGAAGCCTA ATTTAGTAGA TTTTTTCCCC ATACTTGAAA AAATTGATCT TCAAGGAATA 481 AGACGTCGCG CTATCATTCA TTTTGGTAAG TTGTTTAAAC TTTTTGATGA TTTGATCAAC 541 GAACGATTGG AGGAAAAGAA AAGACCAGGA TTCATGGAAA AGAGCGATGT TCTTGAAATA 601 TTTCTCAATA TTACTGAAAA AAATCCTCAA GAGATTGATC ATAATCACAT CAAGT Predicted gene structure (within gDNA segment 15533 to 22086): Exon 1 17912 18564 ( 653 n); cDNA 1 653 ( 653 n); score: 0.843 MATCH C09HBa0033H16.1+ SGN-E335463+ 0.843 653 0.997 C PGS_C09HBa0033H16.1+_SGN-E335463+ (17912 18564) Alignment (genomic DNA sequence = upper lines): ACAACAGTGG TTATTTCTTC ATCAACCATT GCAAAACAAG TCCTCAAAAT TCAAGATCAA 17971 |||||| | | | ||||| || |||||||||| |||||||||| |||| |||| |||||||||| ACAACAATAG TCATTTCCTC ATCAACCATT GCAAAACAAG TCCTTAAAAC TCAAGATCAA 60 GCTTTTTCAA CATATAGATT TGTTCCTAAT GCCATTCAAG CACATAACTA TAGCAAATTC 18031 || |||| ||| |||||| || ||||||| || |||||| | || ||| | | |||||| GCCTTTT--- CATCTAGATT TGCTCCTAAT GCTCTTCAAG CGCACAACCA TTACAAATTT 117 TCTGTGGCAT TTCTTCATGT TTGTCCTCAA TGGCGAACGC TGCGCAAAAT ATTGAACAAA 18091 |||||||||| |||| ||| |||||||||| |||||||||| | || | ||| |||||||| TCTGTGGCAT GGCTTCCTGT TTGTCCTCAA TGGCGAACGC TTCGAAGAAT ATTGAACACT 177 AATATCTTCT CTTCCAAAAG TCTTGATGCA AATCAACATC TAAGGTCTCA AAAAGTGAAA 18151 || |||| | ||||||| | ||||||||| |||||||||| |||||||||| ||| |||||| AACCTCTTAT CTTCCAATAA GCTTGATGCA AATCAACATC TAAGGTCTCA AAAGGTGAAA 237 GAAATGATTG ATTATTGTGA GAAATGTAGT GAACAAGGTA AAGTTGTGGA TATAGGTCAA 18211 || |||||| |||||||||| ||||||||| |||||||| ||| | |||| |||||||||| CAATTGATTG ATTATTGTGA CAAATGTAGT CAACAAGGTG AAGCTTTGGA TATAGGTCAA 297 GTTGCTTTCA AGACTAGTCT TAATTTGTTG TCAAATACCC TTTTCTCCAA GGATTTGGCT 18271 |||| ||||| |||||||||| |||||||||| ||||| || | |||||||||| |||||||||| GTTGTTTTCA AGACTAGTCT TAATTTGTTG TCAAACACAC TTTTCTCCAA GGATTTGGCT 357 GACCCTTTTT CAGATTCGAA GGTGGAGTTG AAGGAAGTTA TAAAGAATAT CATTGATGAG 18331 || ||||||| ||||||| || ||| |||||| |||||||||| || | ||| ||| | |||| GATCCTTTTT CAGATTCAAA GGTAGAGTTG AAGGAAGTTA TATGGGGTAT CATGGCTGAG 417 ATGGGGAATC CTAACCTAGT GGATTTTTTC CCTATACTTG AAAAGTTTGA TCTTCAAGGA 18391 | ||||| | |||| |||| ||||||||| || ||||||| |||| |||| |||||||||| GTAGGGAAGC CTAATTTAGT AGATTTTTTC CCCATACTTG AAAAAATTGA TCTTCAAGGA 477 ATAAAGCGTC GTACAACCAT TCATATTGGT AAATTGTTTA AGCTTTTTGA TGGTTTGATC 18451 |||| |||| | | | ||| |||| ||||| || ||||||| | |||||||| || ||||||| ATAAGACGTC GCGCTATCAT TCATTTTGGT AAGTTGTTTA AACTTTTTGA TGATTTGATC 537 AACGAACGAT TGGAGGAAAA GAGAAG-GTT TCA-T-AGTG AAAGAAGTGA TGTTTTGGAA 18508 |||||||||| |||||||||| || ||| | | | | ||| || || |||| | ||| AACGAACGAT TGGAGGAAAA GAAAAGACCA GGATTCATGG AAAAGAGCGA TGTTCTTGAA 597 GTGTTTCTCA GTATTTGTGA AGAAAATCCT CAAGAAATCA ATCATAATCA CATCAA 18564 | ||||||| |||| ||| | |||||||| ||||| || |||||||||| |||||| ATATTTCTCA ATATTACTGA AAAAAATCCT CAAGAGATTG ATCATAATCA CATCAA 653 hqPGS_C09HBa0033H16.1+_SGN-E335463+ (17912 18564) ******************************************************************************** EST sequence 28 +strand 436 n (File: SGN-E302969+) 1 AACAATAGTC ATTTCCTCAT CAACCATTGC AAAACAAGTC CTTAAAACTC AAGATCAAGC 61 CTTTTCATCT AGATTTGCTC CTAATGCTCT TCAAGCGCAC AACCATTACA AATTTTCTGT 121 GGCATGGCTT CCTGTTTGTC CTCAATGGCG AACGCTTCGA AGAATATTGA ACACTAACCT 181 CTTATCTTCC AATAAGCTTG ATGCAAATCA ACATCTAAGG TCTCAAAAGG TGAAACAATT 241 GATTGATTAT TGTGACAAAT GTAGTCAACA AGGTGAAGCT TTGGATATAG GTCAAGTTGT 301 TTTCAAGACT AGTCTTAATT TGTTGTCAAA CACACTTTTC TCCAAGGATT TGGCTGATCC 361 TTTTTCAGAT TCAAAGGTAG AGTTGAAGGA AGTTATATGG GGTATCATGG CTGAGGTAGG 421 GAAGCCTAAT TTAGTA Predicted gene structure (within gDNA segment 15553 to 19916): Exon 1 17914 18351 ( 438 n); cDNA 1 435 ( 435 n); score: 0.865 MATCH C09HBa0033H16.1+ SGN-E302969+ 0.865 438 1.005 C PGS_C09HBa0033H16.1+_SGN-E302969+ (17914 18351) Alignment (genomic DNA sequence = upper lines): AACAGTGGTT ATTTCTTCAT CAACCATTGC AAAACAAGTC CTCAAAATTC AAGATCAAGC 17973 |||| | || ||||| |||| |||||||||| |||||||||| || |||| || |||||||||| AACAATAGTC ATTTCCTCAT CAACCATTGC AAAACAAGTC CTTAAAACTC AAGATCAAGC 60 TTTTTCAACA TATAGATTTG TTCCTAATGC CATTCAAGCA CATAACTATA GCAAATTCTC 18033 |||| || | |||||||| ||||||||| ||||||| || ||| || |||||| || CTTTT---CA TCTAGATTTG CTCCTAATGC TCTTCAAGCG CACAACCATT ACAAATTTTC 117 TGTGGCATTT CTTCATGTTT GTCCTCAATG GCGAACGCTG CGCAAAATAT TGAACAAAAA 18093 |||||||| |||| ||||| |||||||||| ||||||||| || | ||||| |||||| || TGTGGCATGG CTTCCTGTTT GTCCTCAATG GCGAACGCTT CGAAGAATAT TGAACACTAA 177 TATCTTCTCT TCCAAAAGTC TTGATGCAAA TCAACATCTA AGGTCTCAAA AAGTGAAAGA 18153 |||| ||| ||||| | | |||||||||| |||||||||| |||||||||| | |||||| | CCTCTTATCT TCCAATAAGC TTGATGCAAA TCAACATCTA AGGTCTCAAA AGGTGAAACA 237 AATGATTGAT TATTGTGAGA AATGTAGTGA ACAAGGTAAA GTTGTGGATA TAGGTCAAGT 18213 | |||||||| |||||||| | |||||||| | ||||||| || | | |||||| |||||||||| ATTGATTGAT TATTGTGACA AATGTAGTCA ACAAGGTGAA GCTTTGGATA TAGGTCAAGT 297 TGCTTTCAAG ACTAGTCTTA ATTTGTTGTC AAATACCCTT TTCTCCAAGG ATTTGGCTGA 18273 || ||||||| |||||||||| |||||||||| ||| || ||| |||||||||| |||||||||| TGTTTTCAAG ACTAGTCTTA ATTTGTTGTC AAACACACTT TTCTCCAAGG ATTTGGCTGA 357 CCCTTTTTCA GATTCGAAGG TGGAGTTGAA GGAAGTTATA AAGAATATCA TTGATGAGAT 18333 ||||||||| ||||| |||| | |||||||| |||||||||| | ||||| | | |||| | TCCTTTTTCA GATTCAAAGG TAGAGTTGAA GGAAGTTATA TGGGGTATCA TGGCTGAGGT 417 GGGGAATCCT AACCTAGT 18351 ||||| ||| || |||| AGGGAAGCCT AATTTAGT 435 hqPGS_C09HBa0033H16.1+_SGN-E302969+ (17914 18351) ******************************************************************************** EST sequence 11 +strand 577 n (File: SGN-E278924+) 1 TAAAACTCAA GATCAAGCCT TTTCATCTAG ATTTGCTCCT AATGCTCTTC AAGCGCACAA 61 CCATTACAAA TTTTCTGTGG CATGGCTTCC TGTTTGTCCT CAATGGCGAA CGCTTCGAAG 121 AATATTGAAC ACTAACCTCT TATCTTCCAA TAAGCTTGAT GCAAATCAAC ATCTAAGGTC 181 TCAAAAGGTG AAACAATTGA TTGATTATTG TGACAAATGT AGTCAACAAG GTGAAGCTTT 241 GGATATAGGT CAAGTTGTTT TCAAGACTAG TCTTAATTTG TTGTCAAACA CACTTTTCTC 301 CAAGGATTTG GCTGATCCTT TTTCAGATTC AAAGGTAGAG TTGAAGGAAG TTATATGGGG 361 TATCATGGCT GAGGTAGGGA AGCCTAATTT AGTAGATTTT TTCCCCATAC TTGAAAAAAT 421 TGATCTTCAA GGAATAAGAC GTCGCGCTAT CATTCATTTT GGTAAGTTGT TTAAACTTTT 481 TGATGATTTG ATCAACGAAC GATTGGAGGA AAAGAAAAGA CCAGGATTCA TGGAAAAGAG 541 CGATGTTCTT GAAATATTTC TCAATATTAC TGAAAAA Predicted gene structure (within gDNA segment 15973 to 21746): Exon 1 17957 18532 ( 576 n); cDNA 2 577 ( 576 n); score: 0.836 MATCH C09HBa0033H16.1+ SGN-E278924+ 0.836 576 0.998 C PGS_C09HBa0033H16.1+_SGN-E278924+ (17957 18532) Alignment (genomic DNA sequence = upper lines): AAAATTCAAG ATCAAGCTTT TTCAACATAT AGATTTGTTC CTAATGCCAT TCAAGCACAT 18016 |||| ||||| ||||||| || || ||| | ||||||| || ||||||| | |||||| || AAAACTCAAG ATCAAGCCTT TT---CATCT AGATTTGCTC CTAATGCTCT TCAAGCGCAC 58 AACTATAGCA AATTCTCTGT GGCATTTCTT CATGTTTGTC CTCAATGGCG AACGCTGCGC 18076 ||| || || |||| ||||| ||||| ||| | |||||||| |||||||||| |||||| || AACCATTACA AATTTTCTGT GGCATGGCTT CCTGTTTGTC CTCAATGGCG AACGCTTCGA 118 AAAATATTGA ACAAAAATAT CTTCTCTTCC AAAAGTCTTG ATGCAAATCA ACATCTAAGG 18136 | |||||||| ||| || | ||| |||||| || | |||| |||||||||| |||||||||| AGAATATTGA ACACTAACCT CTTATCTTCC AATAAGCTTG ATGCAAATCA ACATCTAAGG 178 TCTCAAAAAG TGAAAGAAAT GATTGATTAT TGTGAGAAAT GTAGTGAACA AGGTAAAGTT 18196 |||||||| | ||||| || | |||||||||| ||||| |||| ||||| |||| |||| ||| | TCTCAAAAGG TGAAACAATT GATTGATTAT TGTGACAAAT GTAGTCAACA AGGTGAAGCT 238 GTGGATATAG GTCAAGTTGC TTTCAAGACT AGTCTTAATT TGTTGTCAAA TACCCTTTTC 18256 ||||||||| ||||||||| |||||||||| |||||||||| |||||||||| || |||||| TTGGATATAG GTCAAGTTGT TTTCAAGACT AGTCTTAATT TGTTGTCAAA CACACTTTTC 298 TCCAAGGATT TGGCTGACCC TTTTTCAGAT TCGAAGGTGG AGTTGAAGGA AGTTATAAAG 18316 |||||||||| ||||||| || |||||||||| || ||||| | |||||||||| ||||||| | TCCAAGGATT TGGCTGATCC TTTTTCAGAT TCAAAGGTAG AGTTGAAGGA AGTTATATGG 358 AATATCATTG ATGAGATGGG GAATCCTAAC CTAGTGGATT TTTTCCCTAT ACTTGAAAAG 18376 |||||| | |||| | || ||| ||||| |||| |||| ||||||| || ||||||||| GGTATCATGG CTGAGGTAGG GAAGCCTAAT TTAGTAGATT TTTTCCCCAT ACTTGAAAAA 418 TTTGATCTTC AAGGAATAAA GCGTCGTACA ACCATTCATA TTGGTAAATT GTTTAAGCTT 18436 ||||||||| ||||||||| ||||| | | ||||||| ||||||| || |||||| ||| ATTGATCTTC AAGGAATAAG ACGTCGCGCT ATCATTCATT TTGGTAAGTT GTTTAAACTT 478 TTTGATGGTT TGATCAACGA ACGATTGGAG GAAAAGAGAA G-GTTTCA-T -AGTGAAAGA 18493 ||||||| || |||||||||| |||||||||| ||||||| || | | | | |||| TTTGATGATT TGATCAACGA ACGATTGGAG GAAAAGAAAA GACCAGGATT CATGGAAAAG 538 AGTGATGTTT TGGAAGTGTT TCTCAGTATT TGTGAAGAA 18532 || |||||| | ||| | || ||||| |||| |||| || AGCGATGTTC TTGAAATATT TCTCAATATT ACTGAAAAA 577 hqPGS_C09HBa0033H16.1+_SGN-E278924+ (17957 18532) ******************************************************************************** EST sequence 14 +strand 283 n (File: SGN-E309339+) 1 ATGTGTGGGA AATTAATAGA GATTCTACTT TTTGGGAGGA TCCCTTAATG TTTAAGCCTG 61 AGAGGTTTTG GCATTCAAAT TTATACGTGC GAGGACAAGA TTTTGAACTG ATCCCATTTG 121 GTGCGGGTAG AAGAATGTGC CCTGCCTTGC CACTTGCATT GCGAATGATT CCAGTCATGT 181 TGGGCTCACT CTTGAATTCC TTCAATTGGA AACTCGAGGC AGGCATTAGA CCAGAAGACC 241 TAGACATGGA GGAAAAATTT GGTTTGGCTT TAATCAAAGC TCA Predicted gene structure (within gDNA segment 18963 to 20554): Exon 1 19563 19845 ( 283 n); cDNA 1 283 ( 283 n); score: 0.982 MATCH C09HBa0033H16.1+ SGN-E309339+ 0.982 283 1.000 C PGS_C09HBa0033H16.1+_SGN-E309339+ (19563 19845) Alignment (genomic DNA sequence = upper lines): ATGTGTGGGA AATTAATAGA GATTCTACTT TTTGGGAGGA TCCCTTAGTG TTTAAACCTG 19622 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || ||||| |||| ATGTGTGGGA AATTAATAGA GATTCTACTT TTTGGGAGGA TCCCTTAATG TTTAAGCCTG 60 AGAGGTTTTG GCATTCAAAT TTAGACGTGC GAGGACAAGA TTTTGAACTG ATCCCATTTG 19682 |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| AGAGGTTTTG GCATTCAAAT TTATACGTGC GAGGACAAGA TTTTGAACTG ATCCCATTTG 120 GTGCGGGTAG AAGAATGTGC CCTGCCTTGC CACTTGCATT GCGAATGATT CCAGTCATGT 19742 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGCGGGTAG AAGAATGTGC CCTGCCTTGC CACTTGCATT GCGAATGATT CCAGTCATGT 180 TGGGCTCACT CTTGAATTCC TTCAATTGGA AACTCGAGGC AGGCATTAGA CCAGAAGACC 19802 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGCTCACT CTTGAATTCC TTCAATTGGA AACTCGAGGC AGGCATTAGA CCAGAAGACC 240 TAGACATGGA GGAGAAATTT GGTTTGGCTT TAGTCAAAGC TCA 19845 |||||||||| ||| |||||| |||||||||| || ||||||| ||| TAGACATGGA GGAAAAATTT GGTTTGGCTT TAATCAAAGC TCA 283 hqPGS_C09HBa0033H16.1+_SGN-E309339+ (19563 19845) ******************************************************************************** EST sequence 5 +strand 398 n (File: SGN-E310265+) 1 CTATGGATTA CTATACACTT GTGTTTGTGT CAATTTTAGT GTTGGCTAAT ATCATAGCAA 61 AAATATGTAT CAAAGGAAGC AAAAAACTTC CACCAGGTCC ATCACCATGG CCAATTATTG 121 GAAACCTTCA GTTGTTAGGT GCAAAACCTC ATATATCACT AGCCAATCTT GCAAAAAATT 181 ATGGTCCAAT TATGAGTTTA AAGTTAGGTC AAATAACAAC AATAGTCATT TCCTCATCAA 241 CCATTGCAAA ACAAGTCCTT AAAACTCAAG ATCAAGCCTT TTCATCTAGA TTTGCTCCTA 301 ATGCTCTTCA AGCGCACAAC CATTACAAAT TTTCTGTGGC ATGGCTTCCT GTTTGTCCTC 361 AATGGCGAAC GCTTCGAAGA ATATTGAACA CTAACCTC Predicted gene structure (within gDNA segment 23255 to 24862): Exon 1 23855 24252 ( 398 n); cDNA 1 398 ( 398 n); score: 0.997 MATCH C09HBa0033H16.1+ SGN-E310265+ 0.997 398 1.000 C PGS_C09HBa0033H16.1+_SGN-E310265+ (23855 24252) Alignment (genomic DNA sequence = upper lines): CTATGGATTA CTATACACTT GTGTTTGTGT CAATTTTAGT GTTGGCTAAT ATCATAGCAA 23914 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTATGGATTA CTATACACTT GTGTTTGTGT CAATTTTAGT GTTGGCTAAT ATCATAGCAA 60 AAATATGTAG CAAAGGAAGC AAAAAACTTC CACCAGGTCC ATCACCATGG CCAATTATTG 23974 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATATGTAT CAAAGGAAGC AAAAAACTTC CACCAGGTCC ATCACCATGG CCAATTATTG 120 GAAACCTTCA GTTGTTAGGT GCAAAACCTC ATATATCACT AGCCAATCTT GCAAAAAATT 24034 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAACCTTCA GTTGTTAGGT GCAAAACCTC ATATATCACT AGCCAATCTT GCAAAAAATT 180 ATGGTCCAAT TATGAGTTTA AAGTTAGGTC AAATAACAAC AATAGTCATT TCCTCATCAA 24094 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGTCCAAT TATGAGTTTA AAGTTAGGTC AAATAACAAC AATAGTCATT TCCTCATCAA 240 CCATTGCAAA ACAAGTCCTT AAAACTCAAG ATCAAGCCTT TTCATCTAGA TTTGCTCCTA 24154 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATTGCAAA ACAAGTCCTT AAAACTCAAG ATCAAGCCTT TTCATCTAGA TTTGCTCCTA 300 ATGCTCTTCA AGCGCACAAC CATTACAAAT TTTCTGTGGC ATGGCTTCCT GTTTGTCCTC 24214 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCTCTTCA AGCGCACAAC CATTACAAAT TTTCTGTGGC ATGGCTTCCT GTTTGTCCTC 360 AATGGCGAAC GCTTCGAAGA ATATTGAACA CTAACCTC 24252 |||||||||| |||||||||| |||||||||| |||||||| AATGGCGAAC GCTTCGAAGA ATATTGAACA CTAACCTC 398 hqPGS_C09HBa0033H16.1+_SGN-E310265+ (23855 24252) ******************************************************************************** EST sequence 49 -strand 728 n (File: SGN-E390928-) 1 TAATCACATC AAGTCCATGT TCATGGACNT ATTTGGTGCG GGTACTGATA CAACCACAAG 61 CACATTGGAA TGGGCAATGG CAGAATTGCT TAAACAACCT GAGATAATAA AAAAAGCTCA 121 AGTTGAACTT GCTGAAATCA TTGGGAAAGG AAAATTAATA GAAGAAGCTG ATGTTTTTCG 181 ACTCCCTTAC TTGCAATGCA TTATCAAAGA AACATTAAGA TTGCATCCAC CGGTTCCGCT 241 CTTAGTTCCG CGCAAAGTAG ACCAAGATGT TGAATTGTGT GACTACATCA TCCCAAAGGG 301 CTCACAGGTA CTAGTTAATG TGTGGGCGAT TGGTCGAGAT TTTACTTTTT GGAAGGATCC 361 TTTAGAGTTT AAACCTGAGA GATTTTTGAA TTTGGATCTG GACATGCGAG GACAAGATTT 421 TGAGTTGATT CCATTTGGTG CTGGACGAAG AATATGCCCT GGGTTGCCAC TAGCATTGAG 481 GATGATTCCA GTAATGTTGG GCTCACTGTT GAATTCATTC AATTGGAAAC TTGATGCAGG 541 TATTGAGCCA CAAGAATTAG ACATGGAGGA GAAGTTTGGT ATTACCTTAG CCAAAGCTCA 601 TCCTTTGCGA GCTATCCCCT CTCCTCTTTG ATCGATGTTG CATTGCCTAG TCGATAAATA 661 TTTATATGTA TTTGATATTT ACGCTGAAGC AAGTATTTTA ATCTAAATAA TCATATAAAA 721 AAAAAAAA Predicted gene structure (within gDNA segment 23950 to 26468): Exon 1 24711 24735 ( 25 n); cDNA 1 25 ( 25 n); score: 1.000 Intron 1 24736 24845 ( 110 n); Pd: 0.994 (s: 0), Pa: 0.999 (s: 0.98) Exon 2 24846 25127 ( 282 n); cDNA 26 307 ( 282 n); score: 0.996 Intron 2 25128 25348 ( 221 n); Pd: 0.999 (s: 1.00), Pa: 0.626 (s: 1.00) Exon 3 25349 25757 ( 409 n); cDNA 308 716 ( 409 n); score: 1.000 Intron 3 25758 25805 ( 48 n); Pd: 0.000 (s: 1.00), Pa: 0.983 (s: 0) Exon 4 25806 25817 ( 12 n); cDNA 717 728 ( 12 n); score: 0.667 MATCH C09HBa0033H16.1+ SGN-E390928- 0.999 728 1.000 C PGS_C09HBa0033H16.1+_SGN-E390928- (24711 24735,24846 25127,25349 25757,25806 25817) Alignment (genomic DNA sequence = upper lines): TAATCACATC AAGTCCATGT TCATGGTTCG TATTATTTAT CATGAGCTTA TGTTATATTA 24770 |||||||||| |||||||||| ||||| TAATCACATC AAGTCCATGT TCATG..... .......... .......... .......... 25 TTATAATTTA TGAATTTTTT TTATTATTAT TGCAATATAT GGTTATTTAT TTTGATGTAC 24830 .......... .......... .......... .......... .......... .......... 25 AAATTAATGT TATAGGACCT ATTTGGTGCG GGTACTGATA CAACCACAAG CACATTGGAA 24890 ||| | |||||||||| |||||||||| |||||||||| |||||||||| .......... .....GACNT ATTTGGTGCG GGTACTGATA CAACCACAAG CACATTGGAA 70 TGGGCAATGG CAGAATTGCT TAAACAACCT GAGATAATAA AAAAAGCTCA AGTTGAACTT 24950 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGCAATGG CAGAATTGCT TAAACAACCT GAGATAATAA AAAAAGCTCA AGTTGAACTT 130 GCTGAAATCA TTGGGAAAGG AAAATTAATA GAAGAAGCTG ATGTTTTTCG ACTCCCTTAC 25010 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGAAATCA TTGGGAAAGG AAAATTAATA GAAGAAGCTG ATGTTTTTCG ACTCCCTTAC 190 TTGCAATGCA TTATCAAAGA AACATTAAGA TTGCATCCAC CGGTTCCGCT CTTAGTTCCG 25070 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCAATGCA TTATCAAAGA AACATTAAGA TTGCATCCAC CGGTTCCGCT CTTAGTTCCG 250 CGCAAAGTAG ACCAAGATGT TGAATTGTGT GACTACATCA TCCCAAAGGG CTCACAGGTA 25130 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| CGCAAAGTAG ACCAAGATGT TGAATTGTGT GACTACATCA TCCCAAAGGG CTCACAG... 307 TGTATGTGTG GTAAATAAAG TTATTTGACG AAAATAATAT GAATAGTGTA CTAAAGAGGA 25190 .......... .......... .......... .......... .......... .......... 307 CCCAAAAGAA AATTTATAAT TATTTTTTAA AAAAATAAAA TAAATTAAAA TTTGGTTAGA 25250 .......... .......... .......... .......... .......... .......... 307 GTTGGATGGA TTAGGTTTGA CCTGTTGTTT AGTACTGAAT CTTATTGAGC TCTTTTAACC 25310 .......... .......... .......... .......... .......... .......... 307 AATCCAAACA TAAACTAACT CATGTAATTT GAGTCCAGGT ACTAGTTAAT GTGTGGGCGA 25370 || |||||||||| |||||||||| .......... .......... .......... ........GT ACTAGTTAAT GTGTGGGCGA 329 TTGGTCGAGA TTTTACTTTT TGGAAGGATC CTTTAGAGTT TAAACCTGAG AGATTTTTGA 25430 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGTCGAGA TTTTACTTTT TGGAAGGATC CTTTAGAGTT TAAACCTGAG AGATTTTTGA 389 ATTTGGATCT GGACATGCGA GGACAAGATT TTGAGTTGAT TCCATTTGGT GCTGGACGAA 25490 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTGGATCT GGACATGCGA GGACAAGATT TTGAGTTGAT TCCATTTGGT GCTGGACGAA 449 GAATATGCCC TGGGTTGCCA CTAGCATTGA GGATGATTCC AGTAATGTTG GGCTCACTGT 25550 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATATGCCC TGGGTTGCCA CTAGCATTGA GGATGATTCC AGTAATGTTG GGCTCACTGT 509 TGAATTCATT CAATTGGAAA CTTGATGCAG GTATTGAGCC ACAAGAATTA GACATGGAGG 25610 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAATTCATT CAATTGGAAA CTTGATGCAG GTATTGAGCC ACAAGAATTA GACATGGAGG 569 AGAAGTTTGG TATTACCTTA GCCAAAGCTC ATCCTTTGCG AGCTATCCCC TCTCCTCTTT 25670 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAGTTTGG TATTACCTTA GCCAAAGCTC ATCCTTTGCG AGCTATCCCC TCTCCTCTTT 629 GATCGATGTT GCATTGCCTA GTCGATAAAT ATTTATATGT ATTTGATATT TACGCTGAAG 25730 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCGATGTT GCATTGCCTA GTCGATAAAT ATTTATATGT ATTTGATATT TACGCTGAAG 689 CAAGTATTTT AATCTAAATA ATCATATATA TGTATATTGC CTATATATGT TTCTCATGAA 25790 |||||||||| |||||||||| ||||||| CAAGTATTTT AATCTAAATA ATCATAT... .......... .......... .......... 716 TGTTATTTGC TTTAGGCAAA AAGAGAA 25817 ||| || | || .......... .....AAAAA AAAAAAA 728 hqPGS_C09HBa0033H16.1+_SGN-E390928- (24711 24735,24846 25127,25349 25757) ******************************************************************************** EST sequence 8 +strand 553 n (File: SGN-E305501+) 1 GATTACTATT CACTTGTGTT TGTGTCAATT TTAGTGTTGG CTAATATCAT AGCAAAAATA 61 TGTAGCAAAG GAAGCAAAAA ACTTCCACCA GGTCCATCAC CATGGCCAAT TATTGGAAAC 121 CTTCAGTTGT TAGGTGCAAA ACCTCATATA TCACTAGCCA ATCTTGCAAA AAATTATGGT 181 CCAATTATGA GTTTAAAGTT AGGTCAAATA ACAACAATAG TCATTTCCTC ATCAACCATT 241 GCAAAACAAG TCCTTAAAAC TCAAGATCAA GCCTTTTCAT CTAGATTTGC TCCTAATGCT 301 CTTCAAGCGC ACAACCATTA CAAATTTTCT GTGGCATGGC TTCCTGTTTG TCCTCAATGG 361 CGAACGCTTC TAAGAATATT GAACACTAAC CTCTTATCTT CCAATAAGCT TGATGCAAAT 421 CAACATCTAA GGTCTCAAAA GGTGAAACAA TTGATTGATT ATTGTGACAA ATGTAGTCGA 481 CAAGGTGAAG CTTTGGATAT AGGTCAAGTT GTTTTCAAGA CTAGTCTTAA TTTGTTGTCA 541 AACACACTTT TCT Predicted gene structure (within gDNA segment 23170 to 25022): Exon 1 23860 24412 ( 553 n); cDNA 1 553 ( 553 n); score: 0.995 MATCH C09HBa0033H16.1+ SGN-E305501+ 0.995 553 1.000 C PGS_C09HBa0033H16.1+_SGN-E305501+ (23860 24412) Alignment (genomic DNA sequence = upper lines): GATTACTATA CACTTGTGTT TGTGTCAATT TTAGTGTTGG CTAATATCAT AGCAAAAATA 23919 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTACTATT CACTTGTGTT TGTGTCAATT TTAGTGTTGG CTAATATCAT AGCAAAAATA 60 TGTAGCAAAG GAAGCAAAAA ACTTCCACCA GGTCCATCAC CATGGCCAAT TATTGGAAAC 23979 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTAGCAAAG GAAGCAAAAA ACTTCCACCA GGTCCATCAC CATGGCCAAT TATTGGAAAC 120 CTTCAGTTGT TAGGTGCAAA ACCTCATATA TCACTAGCCA ATCTTGCAAA AAATTATGGT 24039 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCAGTTGT TAGGTGCAAA ACCTCATATA TCACTAGCCA ATCTTGCAAA AAATTATGGT 180 CCAATTATGA GTTTAAAGTT AGGTCAAATA ACAACAATAG TCATTTCCTC ATCAACCATT 24099 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAATTATGA GTTTAAAGTT AGGTCAAATA ACAACAATAG TCATTTCCTC ATCAACCATT 240 GCAAAACAAG TCCTTAAAAC TCAAGATCAA GCCTTTTCAT CTAGATTTGC TCCTAATGCT 24159 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAAAACAAG TCCTTAAAAC TCAAGATCAA GCCTTTTCAT CTAGATTTGC TCCTAATGCT 300 CTTCAAGCGC ACAACCATTA CAAATTTTCT GTGGCATGGC TTCCTGTTTG TCCTCAATGG 24219 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCAAGCGC ACAACCATTA CAAATTTTCT GTGGCATGGC TTCCTGTTTG TCCTCAATGG 360 CGAACGCTTC GAAGAATATT GAACACTAAC CTCTTATCTT CCAATAAGCT TGATGCAAAT 24279 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAACGCTTC TAAGAATATT GAACACTAAC CTCTTATCTT CCAATAAGCT TGATGCAAAT 420 CAACATCTAA GGTCTCAAAA GGTGAAACAA TTGATTGATT ATTGTGACAA ATGTAGTCAA 24339 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | CAACATCTAA GGTCTCAAAA GGTGAAACAA TTGATTGATT ATTGTGACAA ATGTAGTCGA 480 CAAGGTGAAG CTTTGGATAT AGGTCAAGTT GTTTTCAAGA CTAGTCTTAA TTTGTTGTCA 24399 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGGTGAAG CTTTGGATAT AGGTCAAGTT GTTTTCAAGA CTAGTCTTAA TTTGTTGTCA 540 AACACACTTT TCT 24412 |||||||||| ||| AACACACTTT TCT 553 hqPGS_C09HBa0033H16.1+_SGN-E305501+ (23860 24412) ******************************************************************************** EST sequence 19 +strand 547 n (File: SGN-E300235+) 1 TTAGTGTTGG CTAATATCAT ACCAAAAATA TGTAGCAAAG GAAGCAAAAA ACTTCCACCA 61 GGTCCATCAC CATGGCCAAT TATTGGAAAC CTTCAGTTGT TAGGTGCAAA ACCTCATATA 121 TCACTAGCCA ATCTTGCAAA AAATTATGGT CCAATTATGA GTTTAAAGTT AGGTCAAATA 181 ACAACAATAG TCATTTCCTC ATCAACCATT GCAAAACAAG TCCTTAAAAC TCAAGATCAA 241 GCCTTTTCAT CTAGATTTGC TCCTAATGCT CTTCAAGCGC ACAACCATTA CAAATTTTCT 301 GTGGCATGGC TTCCTGTTTG TCCTCAATGG CGAACGCTTC GAAGAATATT GAACACTAAC 361 CTCTTATCTT CCAATAAGCT TGATGCAAAT CAACATCTAA GGTCTCAAAA GGTGAAACAA 421 TTGATTGATT ATTGTGACAA ATGTAGTCAA CAAGGTGAAG CTTTGGATAT AGGTCAAGTT 481 GTTTTCAAGA CTAGTCTTAA TTTGTTGTCA AACACACTTT TCTCCAAAGA TTTGGCTGAT 541 CCTTTTT Predicted gene structure (within gDNA segment 23290 to 25046): Exon 1 23890 24436 ( 547 n); cDNA 1 547 ( 547 n); score: 0.996 MATCH C09HBa0033H16.1+ SGN-E300235+ 0.996 547 1.000 C PGS_C09HBa0033H16.1+_SGN-E300235+ (23890 24436) Alignment (genomic DNA sequence = upper lines): TTAGTGTTGG CTAATATCAT AGCAAAAATA TGTAGCAAAG GAAGCAAAAA ACTTCCACCA 23949 |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| TTAGTGTTGG CTAATATCAT ACCAAAAATA TGTAGCAAAG GAAGCAAAAA ACTTCCACCA 60 GGTCCATCAC CATGGCCAAT TATTGGAAAC CTTCAGTTGT TAGGTGCAAA ACCTCATATA 24009 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTCCATCAC CATGGCCAAT TATTGGAAAC CTTCAGTTGT TAGGTGCAAA ACCTCATATA 120 TCACTAGCCA ATCTTGCAAA AAATTATGGT CCAATTATGA GTTTAAAGTT AGGTCAAATA 24069 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCACTAGCCA ATCTTGCAAA AAATTATGGT CCAATTATGA GTTTAAAGTT AGGTCAAATA 180 ACAACAATAG TCATTTCCTC ATCAACCATT GCAAAACAAG TCCTTAAAAC TCAAGATCAA 24129 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAACAATAG TCATTTCCTC ATCAACCATT GCAAAACAAG TCCTTAAAAC TCAAGATCAA 240 GCCTTTTCAT CTAGATTTGC TCCTAATGCT CTTCAAGCGC ACAACCATTA CAAATTTTCT 24189 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCTTTTCAT CTAGATTTGC TCCTAATGCT CTTCAAGCGC ACAACCATTA CAAATTTTCT 300 GTGGCATGGC TTCCTGTTTG TCCTCAATGG CGAACGCTTC GAAGAATATT GAACACTAAC 24249 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGCATGGC TTCCTGTTTG TCCTCAATGG CGAACGCTTC GAAGAATATT GAACACTAAC 360 CTCTTATCTT CCAATAAGCT TGATGCAAAT CAACATCTAA GGTCTCAAAA GGTGAAACAA 24309 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTTATCTT CCAATAAGCT TGATGCAAAT CAACATCTAA GGTCTCAAAA GGTGAAACAA 420 TTGATTGATT ATTGTGACAA ATGTAGTCAA CAAGGTGAAG CTTTGGATAT AGGTCAAGTT 24369 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGATTGATT ATTGTGACAA ATGTAGTCAA CAAGGTGAAG CTTTGGATAT AGGTCAAGTT 480 GTTTTCAAGA CTAGTCTTAA TTTGTTGTCA AACACACTTT TCTCCAAGGA TTTGGCTGAT 24429 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| GTTTTCAAGA CTAGTCTTAA TTTGTTGTCA AACACACTTT TCTCCAAAGA TTTGGCTGAT 540 CCTTTTT 24436 ||||||| CCTTTTT 547 hqPGS_C09HBa0033H16.1+_SGN-E300235+ (23890 24436) ******************************************************************************** EST sequence 23 +strand 574 n (File: SGN-E390674+) 1 AAATATGTAG CAAAGGAAGC AAAAAACTTC CACCAGGTCC ATCACCATGG CCAATTATTG 61 GAAACCTTCA GTTGTTAGGT GCAAAACCTC ATATATCACT AGCCAATCTT GCAAAAAATT 121 ATGGTCCAAT TATGAGTTTA AAGTTAGGTC AAATAACAAC AATAGTCATT TCCTCATCAA 181 CCATTGCAAA ACAAGTCCTT AAAACTCAAG ATCAAGCCTT TTCATCTAGA TTTGCTCCTA 241 ATGCTCTTCA AGCGCACAAC CATTACAAAT TTTCTGTGGC ATGGCTTCCT GTTTGTCCTC 301 AATGGCGAAC GCTTCGAAGA ATATTGAACA CTAACCTCTT ATCTTCCAAT AAGCTTGATG 361 CAAATCAACA TCTAAGGTCT CAAAAGGTGA AACAATTGAT TGATTATTGT GACAAATGTA 421 GTCAACAAGG TGAAGCTTTG GATATAGGTC AAGTTGTTTT CAAGACTAGT CTTAATTTGT 481 TGTCAAACAC ACTTTTCTCC AAGGATTTGG CTGATCCTTT TTCAGATTCA AAGGTAGAGT 541 TGAAGGAAGT TATATGGGGT ATCATGGCTG AGGT Predicted gene structure (within gDNA segment 23315 to 25098): Exon 1 23915 24488 ( 574 n); cDNA 1 574 ( 574 n); score: 1.000 MATCH C09HBa0033H16.1+ SGN-E390674+ 1.000 574 1.000 C PGS_C09HBa0033H16.1+_SGN-E390674+ (23915 24488) Alignment (genomic DNA sequence = upper lines): AAATATGTAG CAAAGGAAGC AAAAAACTTC CACCAGGTCC ATCACCATGG CCAATTATTG 23974 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATATGTAG CAAAGGAAGC AAAAAACTTC CACCAGGTCC ATCACCATGG CCAATTATTG 60 GAAACCTTCA GTTGTTAGGT GCAAAACCTC ATATATCACT AGCCAATCTT GCAAAAAATT 24034 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAACCTTCA GTTGTTAGGT GCAAAACCTC ATATATCACT AGCCAATCTT GCAAAAAATT 120 ATGGTCCAAT TATGAGTTTA AAGTTAGGTC AAATAACAAC AATAGTCATT TCCTCATCAA 24094 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGTCCAAT TATGAGTTTA AAGTTAGGTC AAATAACAAC AATAGTCATT TCCTCATCAA 180 CCATTGCAAA ACAAGTCCTT AAAACTCAAG ATCAAGCCTT TTCATCTAGA TTTGCTCCTA 24154 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATTGCAAA ACAAGTCCTT AAAACTCAAG ATCAAGCCTT TTCATCTAGA TTTGCTCCTA 240 ATGCTCTTCA AGCGCACAAC CATTACAAAT TTTCTGTGGC ATGGCTTCCT GTTTGTCCTC 24214 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCTCTTCA AGCGCACAAC CATTACAAAT TTTCTGTGGC ATGGCTTCCT GTTTGTCCTC 300 AATGGCGAAC GCTTCGAAGA ATATTGAACA CTAACCTCTT ATCTTCCAAT AAGCTTGATG 24274 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGGCGAAC GCTTCGAAGA ATATTGAACA CTAACCTCTT ATCTTCCAAT AAGCTTGATG 360 CAAATCAACA TCTAAGGTCT CAAAAGGTGA AACAATTGAT TGATTATTGT GACAAATGTA 24334 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAATCAACA TCTAAGGTCT CAAAAGGTGA AACAATTGAT TGATTATTGT GACAAATGTA 420 GTCAACAAGG TGAAGCTTTG GATATAGGTC AAGTTGTTTT CAAGACTAGT CTTAATTTGT 24394 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCAACAAGG TGAAGCTTTG GATATAGGTC AAGTTGTTTT CAAGACTAGT CTTAATTTGT 480 TGTCAAACAC ACTTTTCTCC AAGGATTTGG CTGATCCTTT TTCAGATTCA AAGGTAGAGT 24454 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCAAACAC ACTTTTCTCC AAGGATTTGG CTGATCCTTT TTCAGATTCA AAGGTAGAGT 540 TGAAGGAAGT TATATGGGGT ATCATGGCTG AGGT 24488 |||||||||| |||||||||| |||||||||| |||| TGAAGGAAGT TATATGGGGT ATCATGGCTG AGGT 574 hqPGS_C09HBa0033H16.1+_SGN-E390674+ (23915 24488) ******************************************************************************** EST sequence 21 +strand 530 n (File: SGN-E390673+) 1 AAATATGTAG CAAAGGAAGC AAAAAACTTC CACCAGGTCC ATCACCATGG CCAATTATTG 61 GAAACCTTCA GTTGTTAGGT GCAAAACCTC ATATATCACT AGCCAATCTT GCAAAAAATT 121 ATGGTCCAAT TATGAGTTTA AAGTTAGGTC AAATAACAAC AATAGTCATT TCCTCATCAA 181 CCATTGCAAA ACAAGTCCTT AAAACTCAAG ATCAAGCCTT TTCATCTAGA TTTGCTCCTA 241 ATGCTCTTCA AGCGCACAAC CATTACAAAT TTTCTGTGGC ATGGCTTCCT GTTTGTCCTC 301 AATGGCGAAC GCTTCGAAGA ATATTGAACA CTAACCTCTT ATCTTCCAAT AAGCTTGATG 361 CAAATCAACA TCTAAGGTCT CAAAAGGTGA AACAATTGAT TGATTATTGT GACAAATGTA 421 GTCAACAAGG TGAAGCTTTG GATATAGGTC AAGTTGTTTT CAAGACTAGT CTTAATTTGT 481 TGTCAAACAC ACTTTTCTCC AAGGATTTGG CTGATCCTTT TTCAGATTCA Predicted gene structure (within gDNA segment 23315 to 25054): Exon 1 23915 24444 ( 530 n); cDNA 1 530 ( 530 n); score: 1.000 MATCH C09HBa0033H16.1+ SGN-E390673+ 1.000 530 1.000 C PGS_C09HBa0033H16.1+_SGN-E390673+ (23915 24444) Alignment (genomic DNA sequence = upper lines): AAATATGTAG CAAAGGAAGC AAAAAACTTC CACCAGGTCC ATCACCATGG CCAATTATTG 23974 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATATGTAG CAAAGGAAGC AAAAAACTTC CACCAGGTCC ATCACCATGG CCAATTATTG 60 GAAACCTTCA GTTGTTAGGT GCAAAACCTC ATATATCACT AGCCAATCTT GCAAAAAATT 24034 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAACCTTCA GTTGTTAGGT GCAAAACCTC ATATATCACT AGCCAATCTT GCAAAAAATT 120 ATGGTCCAAT TATGAGTTTA AAGTTAGGTC AAATAACAAC AATAGTCATT TCCTCATCAA 24094 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGTCCAAT TATGAGTTTA AAGTTAGGTC AAATAACAAC AATAGTCATT TCCTCATCAA 180 CCATTGCAAA ACAAGTCCTT AAAACTCAAG ATCAAGCCTT TTCATCTAGA TTTGCTCCTA 24154 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATTGCAAA ACAAGTCCTT AAAACTCAAG ATCAAGCCTT TTCATCTAGA TTTGCTCCTA 240 ATGCTCTTCA AGCGCACAAC CATTACAAAT TTTCTGTGGC ATGGCTTCCT GTTTGTCCTC 24214 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCTCTTCA AGCGCACAAC CATTACAAAT TTTCTGTGGC ATGGCTTCCT GTTTGTCCTC 300 AATGGCGAAC GCTTCGAAGA ATATTGAACA CTAACCTCTT ATCTTCCAAT AAGCTTGATG 24274 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGGCGAAC GCTTCGAAGA ATATTGAACA CTAACCTCTT ATCTTCCAAT AAGCTTGATG 360 CAAATCAACA TCTAAGGTCT CAAAAGGTGA AACAATTGAT TGATTATTGT GACAAATGTA 24334 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAATCAACA TCTAAGGTCT CAAAAGGTGA AACAATTGAT TGATTATTGT GACAAATGTA 420 GTCAACAAGG TGAAGCTTTG GATATAGGTC AAGTTGTTTT CAAGACTAGT CTTAATTTGT 24394 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCAACAAGG TGAAGCTTTG GATATAGGTC AAGTTGTTTT CAAGACTAGT CTTAATTTGT 480 TGTCAAACAC ACTTTTCTCC AAGGATTTGG CTGATCCTTT TTCAGATTCA 24444 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCAAACAC ACTTTTCTCC AAGGATTTGG CTGATCCTTT TTCAGATTCA 530 hqPGS_C09HBa0033H16.1+_SGN-E390673+ (23915 24444) ******************************************************************************** EST sequence 29 +strand 527 n (File: SGN-E302472+) 1 AAATATGTAG CAAAGGAAGC AAAAAACTTC CACCAGGTCC ATCACCATGG CCAATTATTG 61 GAAACCTTCA GTTGTTAGGT GCAAAACCTC ATATATCACT AGCCAATCTT GCAAAAAATT 121 ATGGTCCAAT TATGAGTTTA AAGTTAGGTC AAATAACAAC AATAGTCATT TCCTCATCAA 181 CCATTGCAAA ACAAGTCCTT AAAACTCAAG ATCAAGCCTT TTCATCTAGA TTTGCTCCTA 241 ATGCTCTTCA AGCCCCACCA ACCATTACAA ATTTTCTGTG GCATGGCTTC CTGTTTGTCC 301 TCAATGGCGA ACGCCTTCGA AGAATATTGA ACACTAACCT CTTATCTTCC AATAAGCTTG 361 ATGCAAATCA ACATCTAAGG TCTCAAAAGG TGAAACCAAT TGATTGATTA TTGTGACAAA 421 TGTAGTCAAC AAGGTGAAGC TTTGGATATA GGTCAAGTTG TTTTCAAGAC TAGTCTTAAT 481 TTGTTGTCAA ACACACTTTT CTCCAAGGAT TTGGCTGATC CTTTTTC Predicted gene structure (within gDNA segment 23315 to 25047): Exon 1 23915 24437 ( 523 n); cDNA 1 527 ( 527 n); score: 0.979 MATCH C09HBa0033H16.1+ SGN-E302472+ 0.979 523 0.992 C PGS_C09HBa0033H16.1+_SGN-E302472+ (23915 24437) Alignment (genomic DNA sequence = upper lines): AAATATGTAG CAAAGGAAGC AAAAAACTTC CACCAGGTCC ATCACCATGG CCAATTATTG 23974 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATATGTAG CAAAGGAAGC AAAAAACTTC CACCAGGTCC ATCACCATGG CCAATTATTG 60 GAAACCTTCA GTTGTTAGGT GCAAAACCTC ATATATCACT AGCCAATCTT GCAAAAAATT 24034 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAACCTTCA GTTGTTAGGT GCAAAACCTC ATATATCACT AGCCAATCTT GCAAAAAATT 120 ATGGTCCAAT TATGAGTTTA AAGTTAGGTC AAATAACAAC AATAGTCATT TCCTCATCAA 24094 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGTCCAAT TATGAGTTTA AAGTTAGGTC AAATAACAAC AATAGTCATT TCCTCATCAA 180 CCATTGCAAA ACAAGTCCTT AAAACTCAAG ATCAAGCCTT TTCATCTAGA TTTGCTCCTA 24154 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATTGCAAA ACAAGTCCTT AAAACTCAAG ATCAAGCCTT TTCATCTAGA TTTGCTCCTA 240 ATGCTCTTCA AG-CGCA-CA ACCATTACAA ATTTTCTGTG GCATGGCTTC CTGTTTGTCC 24212 |||||||||| || | || || |||||||||| |||||||||| |||||||||| |||||||||| ATGCTCTTCA AGCCCCACCA ACCATTACAA ATTTTCTGTG GCATGGCTTC CTGTTTGTCC 300 TCAATGGCGA ACG-CTTCGA AGAATATTGA ACACTAACCT CTTATCTTCC AATAAGCTTG 24271 |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAATGGCGA ACGCCTTCGA AGAATATTGA ACACTAACCT CTTATCTTCC AATAAGCTTG 360 ATGCAAATCA ACATCTAAGG TCTCAAAAGG TGAAA-CAAT TGATTGATTA TTGTGACAAA 24330 |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| ATGCAAATCA ACATCTAAGG TCTCAAAAGG TGAAACCAAT TGATTGATTA TTGTGACAAA 420 TGTAGTCAAC AAGGTGAAGC TTTGGATATA GGTCAAGTTG TTTTCAAGAC TAGTCTTAAT 24390 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTAGTCAAC AAGGTGAAGC TTTGGATATA GGTCAAGTTG TTTTCAAGAC TAGTCTTAAT 480 TTGTTGTCAA ACACACTTTT CTCCAAGGAT TTGGCTGATC CTTTTTC 24437 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TTGTTGTCAA ACACACTTTT CTCCAAGGAT TTGGCTGATC CTTTTTC 527 hqPGS_C09HBa0033H16.1+_SGN-E302472+ (23915 24437) ******************************************************************************** EST sequence 1 +strand 449 n (File: SGN-E294327+) 1 AATATGTAGC AAAGGAAGCA AAAAACTTCC ACCAGGTCCA TCACCATGGC CAATTATTGG 61 AAACCTTCAG TTGTTAGGTG CAAAACCTCA TATATCACTA GCCAATCTTG CAAAAAATTA 121 TGGTCCAATT ATGAGTTTAA AGTTAGGTCA AATAACAACA ATAGTCATTT CCTCATCAAC 181 CATTGCAAAA CAAGTCCTTA AAACTCAAGA TCAAGCCTTT TCATCTAGAT TTGCTCCTAA 241 TGCTCTTCAA GCGCACAACC ATTACAAATT TTCTGTGGCA TGGCTTCCTG TTTGTCCTCA 301 ATGGCGAACG CTTCGAAGAA TATTGAACAC TAACCTCTTA TCTTCCAATA AGCTTGATGC 361 AAATCAACAT CTAAGGTCTC AAAAGGTGAA ACAATTGATT GATTATTGTG ACAAATGTAG 421 TCAACAAGGT GAAGCTTTGG ATATAGGTC Predicted gene structure (within gDNA segment 23316 to 24974): Exon 1 23916 24364 ( 449 n); cDNA 1 449 ( 449 n); score: 1.000 MATCH C09HBa0033H16.1+ SGN-E294327+ 1.000 449 1.000 C PGS_C09HBa0033H16.1+_SGN-E294327+ (23916 24364) Alignment (genomic DNA sequence = upper lines): AATATGTAGC AAAGGAAGCA AAAAACTTCC ACCAGGTCCA TCACCATGGC CAATTATTGG 23975 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATATGTAGC AAAGGAAGCA AAAAACTTCC ACCAGGTCCA TCACCATGGC CAATTATTGG 60 AAACCTTCAG TTGTTAGGTG CAAAACCTCA TATATCACTA GCCAATCTTG CAAAAAATTA 24035 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACCTTCAG TTGTTAGGTG CAAAACCTCA TATATCACTA GCCAATCTTG CAAAAAATTA 120 TGGTCCAATT ATGAGTTTAA AGTTAGGTCA AATAACAACA ATAGTCATTT CCTCATCAAC 24095 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTCCAATT ATGAGTTTAA AGTTAGGTCA AATAACAACA ATAGTCATTT CCTCATCAAC 180 CATTGCAAAA CAAGTCCTTA AAACTCAAGA TCAAGCCTTT TCATCTAGAT TTGCTCCTAA 24155 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTGCAAAA CAAGTCCTTA AAACTCAAGA TCAAGCCTTT TCATCTAGAT TTGCTCCTAA 240 TGCTCTTCAA GCGCACAACC ATTACAAATT TTCTGTGGCA TGGCTTCCTG TTTGTCCTCA 24215 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTCTTCAA GCGCACAACC ATTACAAATT TTCTGTGGCA TGGCTTCCTG TTTGTCCTCA 300 ATGGCGAACG CTTCGAAGAA TATTGAACAC TAACCTCTTA TCTTCCAATA AGCTTGATGC 24275 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGCGAACG CTTCGAAGAA TATTGAACAC TAACCTCTTA TCTTCCAATA AGCTTGATGC 360 AAATCAACAT CTAAGGTCTC AAAAGGTGAA ACAATTGATT GATTATTGTG ACAAATGTAG 24335 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATCAACAT CTAAGGTCTC AAAAGGTGAA ACAATTGATT GATTATTGTG ACAAATGTAG 420 TCAACAAGGT GAAGCTTTGG ATATAGGTC 24364 |||||||||| |||||||||| ||||||||| TCAACAAGGT GAAGCTTTGG ATATAGGTC 449 hqPGS_C09HBa0033H16.1+_SGN-E294327+ (23916 24364) ******************************************************************************** EST sequence 3 +strand 449 n (File: SGN-E294328+) 1 AATATGTAGC AAAGGAAGCA AAAAACTTCC ACCAGGTCCA TCACCATGGC CAATTATTGG 61 AAACCTTCAG TTGTTAGGTG CAAAACCTCA TATATCACTA GCCAATCTTG CAAAAAATTA 121 TGGTCCAATT ATGAGTTTAA AGTTAGGTCA AATAACAACA ATAGTCATTT CCTCATCAAC 181 CATTGCAAAA CAAGTCCTTA AAACTCAAGA TCAAGCCTTT TCATCTAGAT TTGCTCCTAA 241 TGCTCTTCAA GCGCACAACC ATTACAAATT TTCTGTGGCA TGGCTTCCTG TTTGTCCTCA 301 ATGGCGAACG CTTCGAAGAA TATTGAACAC TAACCTCTTA TCTTCCAATA AGCTTGATGC 361 AAATCAACAT CTAAGGTCTC AAAAGGTGAA ACAATTGATT GATTATTGTG ACAAATGTAG 421 TCAACAAGGT GAAGCTTTGG ATATAGGTC Predicted gene structure (within gDNA segment 23316 to 24974): Exon 1 23916 24364 ( 449 n); cDNA 1 449 ( 449 n); score: 1.000 MATCH C09HBa0033H16.1+ SGN-E294328+ 1.000 449 1.000 C PGS_C09HBa0033H16.1+_SGN-E294328+ (23916 24364) Alignment (genomic DNA sequence = upper lines): AATATGTAGC AAAGGAAGCA AAAAACTTCC ACCAGGTCCA TCACCATGGC CAATTATTGG 23975 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATATGTAGC AAAGGAAGCA AAAAACTTCC ACCAGGTCCA TCACCATGGC CAATTATTGG 60 AAACCTTCAG TTGTTAGGTG CAAAACCTCA TATATCACTA GCCAATCTTG CAAAAAATTA 24035 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACCTTCAG TTGTTAGGTG CAAAACCTCA TATATCACTA GCCAATCTTG CAAAAAATTA 120 TGGTCCAATT ATGAGTTTAA AGTTAGGTCA AATAACAACA ATAGTCATTT CCTCATCAAC 24095 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTCCAATT ATGAGTTTAA AGTTAGGTCA AATAACAACA ATAGTCATTT CCTCATCAAC 180 CATTGCAAAA CAAGTCCTTA AAACTCAAGA TCAAGCCTTT TCATCTAGAT TTGCTCCTAA 24155 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTGCAAAA CAAGTCCTTA AAACTCAAGA TCAAGCCTTT TCATCTAGAT TTGCTCCTAA 240 TGCTCTTCAA GCGCACAACC ATTACAAATT TTCTGTGGCA TGGCTTCCTG TTTGTCCTCA 24215 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTCTTCAA GCGCACAACC ATTACAAATT TTCTGTGGCA TGGCTTCCTG TTTGTCCTCA 300 ATGGCGAACG CTTCGAAGAA TATTGAACAC TAACCTCTTA TCTTCCAATA AGCTTGATGC 24275 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGCGAACG CTTCGAAGAA TATTGAACAC TAACCTCTTA TCTTCCAATA AGCTTGATGC 360 AAATCAACAT CTAAGGTCTC AAAAGGTGAA ACAATTGATT GATTATTGTG ACAAATGTAG 24335 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATCAACAT CTAAGGTCTC AAAAGGTGAA ACAATTGATT GATTATTGTG ACAAATGTAG 420 TCAACAAGGT GAAGCTTTGG ATATAGGTC 24364 |||||||||| |||||||||| ||||||||| TCAACAAGGT GAAGCTTTGG ATATAGGTC 449 hqPGS_C09HBa0033H16.1+_SGN-E294328+ (23916 24364) ******************************************************************************** EST sequence 17 +strand 621 n (File: SGN-E291872+) 1 ATATGTAGCA AAGGAAGCAA AAAACTTCCA CCAGGTCCAT CACCATGGCC AATTATTGGA 61 AACCTTCAGT TGTTAGGTGC AAAACCTCAT ATATCACTAG CCAATCTTGC AAAAAATTAT 121 GGTCCAATTA TGAGTTTAAA GTTAGGTCAA ATAACAACAA TAGTCATTTC CTCATCAACC 181 ATTGCAAAAC AAGTCCTTAA AACTCAAGAT CAAGCCTTTT CATCTAGATT TGCTCCTAAT 241 GCTCTTCAAG CGCACAACCA TTACAAATTT TCTGTGGCAT GGCTTCCTGT TTGTCCTCAA 301 TGGCGAACGC TTCGAAGAAT ATTGAACACT AACCTCTTAT CTTCCAATAA GCTTGATGCA 361 AATCAACATC TAAGGTCTCA AAAGGTGAAA CAATTGATTG ATTATTGTGA CAAATGTAGT 421 CAACAAGGTG AAGCTTTGGA TATAGGTCAA GTTGTTTTCA AGACTAGTCT TAATTTGTTG 481 TCAAACACAC TTTTCTCCAA AGATTTGGCT GATCCTTTTT CAGATTCAAA GGTAGAGTTG 541 AAGGAAGTTA TATGGGGTAT CATGGCTGAG GTAGGGAAGC CTAATTTAGT AGATTTTTTC 601 CCCATACTTG AAAAAATTGA T Predicted gene structure (within gDNA segment 23317 to 25147): Exon 1 23917 24537 ( 621 n); cDNA 1 621 ( 621 n); score: 0.998 MATCH C09HBa0033H16.1+ SGN-E291872+ 0.998 621 1.000 C PGS_C09HBa0033H16.1+_SGN-E291872+ (23917 24537) Alignment (genomic DNA sequence = upper lines): ATATGTAGCA AAGGAAGCAA AAAACTTCCA CCAGGTCCAT CACCATGGCC AATTATTGGA 23976 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATGTAGCA AAGGAAGCAA AAAACTTCCA CCAGGTCCAT CACCATGGCC AATTATTGGA 60 AACCTTCAGT TGTTAGGTGC AAAACCTCAT ATATCACTAG CCAATCTTGC AAAAAATTAT 24036 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACCTTCAGT TGTTAGGTGC AAAACCTCAT ATATCACTAG CCAATCTTGC AAAAAATTAT 120 GGTCCAATTA TGAGTTTAAA GTTAGGTCAA ATAACAACAA TAGTCATTTC CTCATCAACC 24096 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTCCAATTA TGAGTTTAAA GTTAGGTCAA ATAACAACAA TAGTCATTTC CTCATCAACC 180 ATTGCAAAAC AAGTCCTTAA AACTCAAGAT CAAGCCTTTT CATCTAGATT TGCTCCTAAT 24156 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGCAAAAC AAGTCCTTAA AACTCAAGAT CAAGCCTTTT CATCTAGATT TGCTCCTAAT 240 GCTCTTCAAG CGCACAACCA TTACAAATTT TCTGTGGCAT GGCTTCCTGT TTGTCCTCAA 24216 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTCTTCAAG CGCACAACCA TTACAAATTT TCTGTGGCAT GGCTTCCTGT TTGTCCTCAA 300 TGGCGAACGC TTCGAAGAAT ATTGAACACT AACCTCTTAT CTTCCAATAA GCTTGATGCA 24276 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGCGAACGC TTCGAAGAAT ATTGAACACT AACCTCTTAT CTTCCAATAA GCTTGATGCA 360 AATCAACATC TAAGGTCTCA AAAGGTGAAA CAATTGATTG ATTATTGTGA CAAATGTAGT 24336 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCAACATC TAAGGTCTCA AAAGGTGAAA CAATTGATTG ATTATTGTGA CAAATGTAGT 420 CAACAAGGTG AAGCTTTGGA TATAGGTCAA GTTGTTTTCA AGACTAGTCT TAATTTGTTG 24396 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACAAGGTG AAGCTTTGGA TATAGGTCAA GTTGTTTTCA AGACTAGTCT TAATTTGTTG 480 TCAAACACAC TTTTCTCCAA GGATTTGGCT GATCCTTTTT CAGATTCAAA GGTAGAGTTG 24456 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| TCAAACACAC TTTTCTCCAA AGATTTGGCT GATCCTTTTT CAGATTCAAA GGTAGAGTTG 540 AAGGAAGTTA TATGGGGTAT CATGGCTGAG GTAGGGAAGC CTAATTTAGT AGATTTTTTC 24516 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGAAGTTA TATGGGGTAT CATGGCTGAG GTAGGGAAGC CTAATTTAGT AGATTTTTTC 600 CCCATACTTG AAAAAATTGA T 24537 |||||||||| |||||||||| | CCCATACTTG AAAAAATTGA T 621 hqPGS_C09HBa0033H16.1+_SGN-E291872+ (23917 24537) ******************************************************************************** EST sequence 15 +strand 578 n (File: SGN-E291937+) 1 ATATGTAGCA AAGGAAGCAA AAAACTTCCA CCAGGTCCAT CACCATGGCC AATTATTGGA 61 AACCTTCAGT TGTTAGGTGC AAAACCTCAT ATATCACTAG CCAATCTTGC AAAAAATTAT 121 GGTCCAATTA TGAGTTTAAA GTTAGGGNNN TNNCCCNAAA AATAACAACA ATAGTCATTT 181 CCTCATCAAC CATTGCAAAA CAAGTCCTTA AAACTCAAGA TCAAGCCTTT TCATCTAGAT 241 TTGCTCCTAT TGCTCTTCAA GCGCACAACC ATTACAAATT TTCTGTGGCA TGGCTTCCTG 301 CCTGTCCTCA ATGGCAAACG CTTCGAAGAA TATTGAACAC TAACCTCTTA TCTTCCAATA 361 AGCTTGATGC AAATCAACAT CTAAGGTCTC AAAAGGTGAA ACAATTGATT GATTATTGTG 421 ACAAATGTAG TCAACAAGGT GAAGCTTTGG ATATAGGTCA AGTTGTTTTC AAGACTAGTC 481 TTAATTTGTT GTCAAACACA CTTTTCTCCA AGGATTTGGC TGATCCTTTT TCAGATTCAA 541 AGGTAGAGTT GAAGGAAGTT ATATGGGGTA TCATGGCT Predicted gene structure (within gDNA segment 23317 to 25093): Exon 1 23917 24483 ( 567 n); cDNA 1 578 ( 578 n); score: 0.944 MATCH C09HBa0033H16.1+ SGN-E291937+ 0.944 567 0.981 C PGS_C09HBa0033H16.1+_SGN-E291937+ (23917 24483) Alignment (genomic DNA sequence = upper lines): ATATGTAGCA AAGGAAGCAA AAAACTTCCA CCAGGTCCAT CACCATGGCC AATTATTGGA 23976 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATGTAGCA AAGGAAGCAA AAAACTTCCA CCAGGTCCAT CACCATGGCC AATTATTGGA 60 AACCTTCAGT TGTTAGGTGC AAAACCTCAT ATATCACTAG CCAATCTTGC AAAAAATTAT 24036 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACCTTCAGT TGTTAGGTGC AAAACCTCAT ATATCACTAG CCAATCTTGC AAAAAATTAT 120 GGTCCAATTA TGAGTTTAAA GTTA-GG--- T----C--AA A-TAACAACA ATAGTCATTT 24085 |||||||||| |||||||||| |||| || | | || | |||||||| |||||||||| GGTCCAATTA TGAGTTTAAA GTTAGGGNNN TNNCCCNAAA AATAACAACA ATAGTCATTT 180 CCTCATCAAC CATTGCAAAA CAAGTCCTTA AAACTCAAGA TCAAGCCTTT TCATCTAGAT 24145 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTCATCAAC CATTGCAAAA CAAGTCCTTA AAACTCAAGA TCAAGCCTTT TCATCTAGAT 240 TTGCTCCTAA TGCTCTTCAA GCGCACAACC ATTACAAATT TTCTGTGGCA TGGCTTCCTG 24205 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCTCCTAT TGCTCTTCAA GCGCACAACC ATTACAAATT TTCTGTGGCA TGGCTTCCTG 300 TTTGTCCTCA ATGGCGAACG CTTCGAAGAA TATTGAACAC TAACCTCTTA TCTTCCAATA 24265 |||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| CCTGTCCTCA ATGGCAAACG CTTCGAAGAA TATTGAACAC TAACCTCTTA TCTTCCAATA 360 AGCTTGATGC AAATCAACAT CTAAGGTCTC AAAAGGTGAA ACAATTGATT GATTATTGTG 24325 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTTGATGC AAATCAACAT CTAAGGTCTC AAAAGGTGAA ACAATTGATT GATTATTGTG 420 ACAAATGTAG TCAACAAGGT GAAGCTTTGG ATATAGGTCA AGTTGTTTTC AAGACTAGTC 24385 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAAATGTAG TCAACAAGGT GAAGCTTTGG ATATAGGTCA AGTTGTTTTC AAGACTAGTC 480 TTAATTTGTT GTCAAACACA CTTTTCTCCA AGGATTTGGC TGATCCTTTT TCAGATTCAA 24445 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAATTTGTT GTCAAACACA CTTTTCTCCA AGGATTTGGC TGATCCTTTT TCAGATTCAA 540 AGGTAGAGTT GAAGGAAGTT ATATGGGGTA TCATGGCT 24483 |||||||||| |||||||||| |||||||||| |||||||| AGGTAGAGTT GAAGGAAGTT ATATGGGGTA TCATGGCT 578 hqPGS_C09HBa0033H16.1+_SGN-E291937+ (23917 24483) ******************************************************************************** EST sequence 25 +strand 606 n (File: SGN-E301544+) 1 TTATTGGAAA CCTTCAGTTG TTAGGTGCAA AACCTCATAT ATCACTAGCC AATCTTGCAA 61 AAAATTATGG TCCAATTATG AGTTTAAAGT TAGGTCAAAT AACAACAATA GTCATTTCCT 121 CATCAACCAT TGCAAAACAA GTCCTTAAAA CTCAAGATCA AGCCTTTTCA TCTAGATTTG 181 CTCCTAATGC TCTTCAAGCG CACAACCATT ACAAATTTTC TGTGGCATGG CTTCCTGTTT 241 GTCCTCAATG GCGAACGCTT CGAAGAATAT TGAACACTAA CCTCTTATCT TCCAATAAGC 301 TTGATGCAAA TCAACATCTA AGGTCTCAAA AGGTGAAACA ATTGATTGAT TATTGTGACA 361 AATGTAGTCA ACAAGGTGAA GCTTTGGATA TAGGTCAAGT TGTTTTCAAG ACTAGTCTTA 421 ATTTGTTGTC AAACACACTT TTCTCCAAGG ATTTGGCTGA TCCTTTTTCA GATTCAAAGG 481 TAGAGTTGAA GGAAGTTATA TGGGGTATCA TGGCTGAGGT AGGGAAGCCT AATTTAGTAG 541 ATTTTTTCCC CATACTTGAA AAAATTGATC TTCAAGGAAT AAGACGTCGC GCTATCATTC 601 ATTTTG Predicted gene structure (within gDNA segment 23369 to 25184): Exon 1 23969 24574 ( 606 n); cDNA 1 606 ( 606 n); score: 1.000 MATCH C09HBa0033H16.1+ SGN-E301544+ 1.000 606 1.000 C PGS_C09HBa0033H16.1+_SGN-E301544+ (23969 24574) Alignment (genomic DNA sequence = upper lines): TTATTGGAAA CCTTCAGTTG TTAGGTGCAA AACCTCATAT ATCACTAGCC AATCTTGCAA 24028 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATTGGAAA CCTTCAGTTG TTAGGTGCAA AACCTCATAT ATCACTAGCC AATCTTGCAA 60 AAAATTATGG TCCAATTATG AGTTTAAAGT TAGGTCAAAT AACAACAATA GTCATTTCCT 24088 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATTATGG TCCAATTATG AGTTTAAAGT TAGGTCAAAT AACAACAATA GTCATTTCCT 120 CATCAACCAT TGCAAAACAA GTCCTTAAAA CTCAAGATCA AGCCTTTTCA TCTAGATTTG 24148 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCAACCAT TGCAAAACAA GTCCTTAAAA CTCAAGATCA AGCCTTTTCA TCTAGATTTG 180 CTCCTAATGC TCTTCAAGCG CACAACCATT ACAAATTTTC TGTGGCATGG CTTCCTGTTT 24208 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCCTAATGC TCTTCAAGCG CACAACCATT ACAAATTTTC TGTGGCATGG CTTCCTGTTT 240 GTCCTCAATG GCGAACGCTT CGAAGAATAT TGAACACTAA CCTCTTATCT TCCAATAAGC 24268 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCCTCAATG GCGAACGCTT CGAAGAATAT TGAACACTAA CCTCTTATCT TCCAATAAGC 300 TTGATGCAAA TCAACATCTA AGGTCTCAAA AGGTGAAACA ATTGATTGAT TATTGTGACA 24328 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGATGCAAA TCAACATCTA AGGTCTCAAA AGGTGAAACA ATTGATTGAT TATTGTGACA 360 AATGTAGTCA ACAAGGTGAA GCTTTGGATA TAGGTCAAGT TGTTTTCAAG ACTAGTCTTA 24388 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGTAGTCA ACAAGGTGAA GCTTTGGATA TAGGTCAAGT TGTTTTCAAG ACTAGTCTTA 420 ATTTGTTGTC AAACACACTT TTCTCCAAGG ATTTGGCTGA TCCTTTTTCA GATTCAAAGG 24448 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTGTTGTC AAACACACTT TTCTCCAAGG ATTTGGCTGA TCCTTTTTCA GATTCAAAGG 480 TAGAGTTGAA GGAAGTTATA TGGGGTATCA TGGCTGAGGT AGGGAAGCCT AATTTAGTAG 24508 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGAGTTGAA GGAAGTTATA TGGGGTATCA TGGCTGAGGT AGGGAAGCCT AATTTAGTAG 540 ATTTTTTCCC CATACTTGAA AAAATTGATC TTCAAGGAAT AAGACGTCGC GCTATCATTC 24568 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTTTTCCC CATACTTGAA AAAATTGATC TTCAAGGAAT AAGACGTCGC GCTATCATTC 600 ATTTTG 24574 |||||| ATTTTG 606 hqPGS_C09HBa0033H16.1+_SGN-E301544+ (23969 24574) ******************************************************************************** EST sequence 48 -strand 626 n (File: SGN-E390927-) 1 GATAATAAAA AAAGCTCAAG TTGAACTGCT GNAAATCATC GGGAAAGGAA AATTAATAGA 61 AGAAGCTGAT GTTNTTCGAC TCCCTTACTT GCAATGCATT ATCAAAGAAA CATTAAGATT 121 GCATCCACCG GTTCCGCTCT TAGTTCCGCG CAAAGTAGAC CAAGATGTTG AATTGTGTGA 181 CTACATCATC CCAAAGGGCT CACAGGTACT AGTTAATGTG TGGGCGATTG GTCGAGATTT 241 TACTTTTTGG AAGGATCCTT TAGAGTTTAA ACCTGAGAGA TTTTTGAATT TGGATCTGGA 301 CATGCGAGGA CAAGATTTTG AGTTGATTCC ATTTGGTGCT GGACGAAGAA TATGCCCTGG 361 GTTGCCACTA GCATTGAGGA TGATTCCAGT AATGTTGGGC TCACTGTTGA ATTCATTCAA 421 TTGGAAACTT GATGCAGGTA TTGAGCCACA AGAATTAGAC ATGGAGGAGA AGTTTGGTAT 481 TACCTTAGCC AAAGCTCATC CTTTGCGAGC TATCCCCTCT CCTCTTTGAT CGATGTTGCA 541 TTGCCTAGTC GATAAATATT TATATGTATT TGATATTTAC GCTGAAGCAA GTATTTTAAT 601 CTAAATAATC ATATAAAAAA AAAAAA Predicted gene structure (within gDNA segment 24313 to 26468): Exon 1 24923 25127 ( 205 n); cDNA 1 205 ( 205 n); score: 0.966 Intron 1 25128 25348 ( 221 n); Pd: 0.999 (s: 1.00), Pa: 0.626 (s: 1.00) Exon 2 25349 25757 ( 409 n); cDNA 206 614 ( 409 n); score: 1.000 Intron 2 25758 25805 ( 48 n); Pd: 0.000 (s: 1.00), Pa: 0.983 (s: 0) Exon 3 25806 25817 ( 12 n); cDNA 615 626 ( 12 n); score: 0.667 MATCH C09HBa0033H16.1+ SGN-E390927- 0.989 626 1.000 C PGS_C09HBa0033H16.1+_SGN-E390927- (24923 25127,25349 25757,25806 25817) Alignment (genomic DNA sequence = upper lines): GATAATAAAA AAAGCTCAAG TTGAACTTGC TGAAATCATT GGGAAAGGAA AATTAATAGA 24982 |||||||||| |||||||||| ||||||| ||||||| |||||||||| |||||||||| GATAATAAAA AAAGCTCAAG TTGAACTGCT GNAAATCATC GGGAAAGGAA AATTAATAGA 60 AGAAGCTGAT GTTTTTCGAC TCCCTTACTT GCAATGCATT ATCAAAGAAA CATTAAGATT 25042 |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAGCTGAT GTTNTTCGAC TCCCTTACTT GCAATGCATT ATCAAAGAAA CATTAAGATT 120 GCATCCACCG GTTCCGCTCT TAGTTCCGCG CAAAGTAGAC CAAGATGTTG AATTGTGTGA 25102 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCATCCACCG GTTCCGCTCT TAGTTCCGCG CAAAGTAGAC CAAGATGTTG AATTGTGTGA 180 CTACATCATC CCAAAGGGCT CACAGGTATG TATGTGTGGT AAATAAAGTT ATTTGACGAA 25162 |||||||||| |||||||||| ||||| CTACATCATC CCAAAGGGCT CACAG..... .......... .......... .......... 205 AATAATATGA ATAGTGTACT AAAGAGGACC CAAAAGAAAA TTTATAATTA TTTTTTAAAA 25222 .......... .......... .......... .......... .......... .......... 205 AAATAAAATA AATTAAAATT TGGTTAGAGT TGGATGGATT AGGTTTGACC TGTTGTTTAG 25282 .......... .......... .......... .......... .......... .......... 205 TACTGAATCT TATTGAGCTC TTTTAACCAA TCCAAACATA AACTAACTCA TGTAATTTGA 25342 .......... .......... .......... .......... .......... .......... 205 GTCCAGGTAC TAGTTAATGT GTGGGCGATT GGTCGAGATT TTACTTTTTG GAAGGATCCT 25402 |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ......GTAC TAGTTAATGT GTGGGCGATT GGTCGAGATT TTACTTTTTG GAAGGATCCT 259 TTAGAGTTTA AACCTGAGAG ATTTTTGAAT TTGGATCTGG ACATGCGAGG ACAAGATTTT 25462 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGAGTTTA AACCTGAGAG ATTTTTGAAT TTGGATCTGG ACATGCGAGG ACAAGATTTT 319 GAGTTGATTC CATTTGGTGC TGGACGAAGA ATATGCCCTG GGTTGCCACT AGCATTGAGG 25522 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTTGATTC CATTTGGTGC TGGACGAAGA ATATGCCCTG GGTTGCCACT AGCATTGAGG 379 ATGATTCCAG TAATGTTGGG CTCACTGTTG AATTCATTCA ATTGGAAACT TGATGCAGGT 25582 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGATTCCAG TAATGTTGGG CTCACTGTTG AATTCATTCA ATTGGAAACT TGATGCAGGT 439 ATTGAGCCAC AAGAATTAGA CATGGAGGAG AAGTTTGGTA TTACCTTAGC CAAAGCTCAT 25642 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGAGCCAC AAGAATTAGA CATGGAGGAG AAGTTTGGTA TTACCTTAGC CAAAGCTCAT 499 CCTTTGCGAG CTATCCCCTC TCCTCTTTGA TCGATGTTGC ATTGCCTAGT CGATAAATAT 25702 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTTGCGAG CTATCCCCTC TCCTCTTTGA TCGATGTTGC ATTGCCTAGT CGATAAATAT 559 TTATATGTAT TTGATATTTA CGCTGAAGCA AGTATTTTAA TCTAAATAAT CATATATATG 25762 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| TTATATGTAT TTGATATTTA CGCTGAAGCA AGTATTTTAA TCTAAATAAT CATAT..... 614 TATATTGCCT ATATATGTTT CTCATGAATG TTATTTGCTT TAGGCAAAAA GAGAA 25817 ||||| | || .......... .......... .......... .......... ...AAAAAAA AAAAA 626 hqPGS_C09HBa0033H16.1+_SGN-E390927- (24923 25127,25349 25757) ******************************************************************************** EST sequence 12 +strand 655 n (File: SGN-E335463+) 1 ACAACAATAG TCATTTCCTC ATCAACCATT GCAAAACAAG TCCTTAAAAC TCAAGATCAA 61 GCCTTTTCAT CTAGATTTGC TCCTAATGCT CTTCAAGCGC ACAACCATTA CAAATTTTCT 121 GTGGCATGGC TTCCTGTTTG TCCTCAATGG CGAACGCTTC GAAGAATATT GAACACTAAC 181 CTCTTATCTT CCAATAAGCT TGATGCAAAT CAACATCTAA GGTCTCAAAA GGTGAAACAA 241 TTGATTGATT ATTGTGACAA ATGTAGTCAA CAAGGTGAAG CTTTGGATAT AGGTCAAGTT 301 GTTTTCAAGA CTAGTCTTAA TTTGTTGTCA AACACACTTT TCTCCAAGGA TTTGGCTGAT 361 CCTTTTTCAG ATTCAAAGGT AGAGTTGAAG GAAGTTATAT GGGGTATCAT GGCTGAGGTA 421 GGGAAGCCTA ATTTAGTAGA TTTTTTCCCC ATACTTGAAA AAATTGATCT TCAAGGAATA 481 AGACGTCGCG CTATCATTCA TTTTGGTAAG TTGTTTAAAC TTTTTGATGA TTTGATCAAC 541 GAACGATTGG AGGAAAAGAA AAGACCAGGA TTCATGGAAA AGAGCGATGT TCTTGAAATA 601 TTTCTCAATA TTACTGAAAA AAATCCTCAA GAGATTGATC ATAATCACAT CAAGT Predicted gene structure (within gDNA segment 23470 to 25334): Exon 1 24070 24724 ( 655 n); cDNA 1 655 ( 655 n); score: 1.000 MATCH C09HBa0033H16.1+ SGN-E335463+ 1.000 655 1.000 C PGS_C09HBa0033H16.1+_SGN-E335463+ (24070 24724) Alignment (genomic DNA sequence = upper lines): ACAACAATAG TCATTTCCTC ATCAACCATT GCAAAACAAG TCCTTAAAAC TCAAGATCAA 24129 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAACAATAG TCATTTCCTC ATCAACCATT GCAAAACAAG TCCTTAAAAC TCAAGATCAA 60 GCCTTTTCAT CTAGATTTGC TCCTAATGCT CTTCAAGCGC ACAACCATTA CAAATTTTCT 24189 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCTTTTCAT CTAGATTTGC TCCTAATGCT CTTCAAGCGC ACAACCATTA CAAATTTTCT 120 GTGGCATGGC TTCCTGTTTG TCCTCAATGG CGAACGCTTC GAAGAATATT GAACACTAAC 24249 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGCATGGC TTCCTGTTTG TCCTCAATGG CGAACGCTTC GAAGAATATT GAACACTAAC 180 CTCTTATCTT CCAATAAGCT TGATGCAAAT CAACATCTAA GGTCTCAAAA GGTGAAACAA 24309 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTTATCTT CCAATAAGCT TGATGCAAAT CAACATCTAA GGTCTCAAAA GGTGAAACAA 240 TTGATTGATT ATTGTGACAA ATGTAGTCAA CAAGGTGAAG CTTTGGATAT AGGTCAAGTT 24369 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGATTGATT ATTGTGACAA ATGTAGTCAA CAAGGTGAAG CTTTGGATAT AGGTCAAGTT 300 GTTTTCAAGA CTAGTCTTAA TTTGTTGTCA AACACACTTT TCTCCAAGGA TTTGGCTGAT 24429 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTTCAAGA CTAGTCTTAA TTTGTTGTCA AACACACTTT TCTCCAAGGA TTTGGCTGAT 360 CCTTTTTCAG ATTCAAAGGT AGAGTTGAAG GAAGTTATAT GGGGTATCAT GGCTGAGGTA 24489 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTTTTCAG ATTCAAAGGT AGAGTTGAAG GAAGTTATAT GGGGTATCAT GGCTGAGGTA 420 GGGAAGCCTA ATTTAGTAGA TTTTTTCCCC ATACTTGAAA AAATTGATCT TCAAGGAATA 24549 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGAAGCCTA ATTTAGTAGA TTTTTTCCCC ATACTTGAAA AAATTGATCT TCAAGGAATA 480 AGACGTCGCG CTATCATTCA TTTTGGTAAG TTGTTTAAAC TTTTTGATGA TTTGATCAAC 24609 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGACGTCGCG CTATCATTCA TTTTGGTAAG TTGTTTAAAC TTTTTGATGA TTTGATCAAC 540 GAACGATTGG AGGAAAAGAA AAGACCAGGA TTCATGGAAA AGAGCGATGT TCTTGAAATA 24669 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACGATTGG AGGAAAAGAA AAGACCAGGA TTCATGGAAA AGAGCGATGT TCTTGAAATA 600 TTTCTCAATA TTACTGAAAA AAATCCTCAA GAGATTGATC ATAATCACAT CAAGT 24724 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| TTTCTCAATA TTACTGAAAA AAATCCTCAA GAGATTGATC ATAATCACAT CAAGT 655 hqPGS_C09HBa0033H16.1+_SGN-E335463+ (24070 24724) ******************************************************************************** EST sequence 27 +strand 436 n (File: SGN-E302969+) 1 AACAATAGTC ATTTCCTCAT CAACCATTGC AAAACAAGTC CTTAAAACTC AAGATCAAGC 61 CTTTTCATCT AGATTTGCTC CTAATGCTCT TCAAGCGCAC AACCATTACA AATTTTCTGT 121 GGCATGGCTT CCTGTTTGTC CTCAATGGCG AACGCTTCGA AGAATATTGA ACACTAACCT 181 CTTATCTTCC AATAAGCTTG ATGCAAATCA ACATCTAAGG TCTCAAAAGG TGAAACAATT 241 GATTGATTAT TGTGACAAAT GTAGTCAACA AGGTGAAGCT TTGGATATAG GTCAAGTTGT 301 TTTCAAGACT AGTCTTAATT TGTTGTCAAA CACACTTTTC TCCAAGGATT TGGCTGATCC 361 TTTTTCAGAT TCAAAGGTAG AGTTGAAGGA AGTTATATGG GGTATCATGG CTGAGGTAGG 421 GAAGCCTAAT TTAGTA Predicted gene structure (within gDNA segment 23472 to 25117): Exon 1 24072 24507 ( 436 n); cDNA 1 436 ( 436 n); score: 1.000 MATCH C09HBa0033H16.1+ SGN-E302969+ 1.000 436 1.000 C PGS_C09HBa0033H16.1+_SGN-E302969+ (24072 24507) Alignment (genomic DNA sequence = upper lines): AACAATAGTC ATTTCCTCAT CAACCATTGC AAAACAAGTC CTTAAAACTC AAGATCAAGC 24131 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACAATAGTC ATTTCCTCAT CAACCATTGC AAAACAAGTC CTTAAAACTC AAGATCAAGC 60 CTTTTCATCT AGATTTGCTC CTAATGCTCT TCAAGCGCAC AACCATTACA AATTTTCTGT 24191 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTTCATCT AGATTTGCTC CTAATGCTCT TCAAGCGCAC AACCATTACA AATTTTCTGT 120 GGCATGGCTT CCTGTTTGTC CTCAATGGCG AACGCTTCGA AGAATATTGA ACACTAACCT 24251 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCATGGCTT CCTGTTTGTC CTCAATGGCG AACGCTTCGA AGAATATTGA ACACTAACCT 180 CTTATCTTCC AATAAGCTTG ATGCAAATCA ACATCTAAGG TCTCAAAAGG TGAAACAATT 24311 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTATCTTCC AATAAGCTTG ATGCAAATCA ACATCTAAGG TCTCAAAAGG TGAAACAATT 240 GATTGATTAT TGTGACAAAT GTAGTCAACA AGGTGAAGCT TTGGATATAG GTCAAGTTGT 24371 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTGATTAT TGTGACAAAT GTAGTCAACA AGGTGAAGCT TTGGATATAG GTCAAGTTGT 300 TTTCAAGACT AGTCTTAATT TGTTGTCAAA CACACTTTTC TCCAAGGATT TGGCTGATCC 24431 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCAAGACT AGTCTTAATT TGTTGTCAAA CACACTTTTC TCCAAGGATT TGGCTGATCC 360 TTTTTCAGAT TCAAAGGTAG AGTTGAAGGA AGTTATATGG GGTATCATGG CTGAGGTAGG 24491 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTCAGAT TCAAAGGTAG AGTTGAAGGA AGTTATATGG GGTATCATGG CTGAGGTAGG 420 GAAGCCTAAT TTAGTA 24507 |||||||||| |||||| GAAGCCTAAT TTAGTA 436 hqPGS_C09HBa0033H16.1+_SGN-E302969+ (24072 24507) ******************************************************************************** EST sequence 10 +strand 577 n (File: SGN-E278924+) 1 TAAAACTCAA GATCAAGCCT TTTCATCTAG ATTTGCTCCT AATGCTCTTC AAGCGCACAA 61 CCATTACAAA TTTTCTGTGG CATGGCTTCC TGTTTGTCCT CAATGGCGAA CGCTTCGAAG 121 AATATTGAAC ACTAACCTCT TATCTTCCAA TAAGCTTGAT GCAAATCAAC ATCTAAGGTC 181 TCAAAAGGTG AAACAATTGA TTGATTATTG TGACAAATGT AGTCAACAAG GTGAAGCTTT 241 GGATATAGGT CAAGTTGTTT TCAAGACTAG TCTTAATTTG TTGTCAAACA CACTTTTCTC 301 CAAGGATTTG GCTGATCCTT TTTCAGATTC AAAGGTAGAG TTGAAGGAAG TTATATGGGG 361 TATCATGGCT GAGGTAGGGA AGCCTAATTT AGTAGATTTT TTCCCCATAC TTGAAAAAAT 421 TGATCTTCAA GGAATAAGAC GTCGCGCTAT CATTCATTTT GGTAAGTTGT TTAAACTTTT 481 TGATGATTTG ATCAACGAAC GATTGGAGGA AAAGAAAAGA CCAGGATTCA TGGAAAAGAG 541 CGATGTTCTT GAAATATTTC TCAATATTAC TGAAAAA Predicted gene structure (within gDNA segment 23514 to 25300): Exon 1 24114 24690 ( 577 n); cDNA 1 577 ( 577 n); score: 1.000 MATCH C09HBa0033H16.1+ SGN-E278924+ 1.000 577 1.000 C PGS_C09HBa0033H16.1+_SGN-E278924+ (24114 24690) Alignment (genomic DNA sequence = upper lines): TAAAACTCAA GATCAAGCCT TTTCATCTAG ATTTGCTCCT AATGCTCTTC AAGCGCACAA 24173 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAAACTCAA GATCAAGCCT TTTCATCTAG ATTTGCTCCT AATGCTCTTC AAGCGCACAA 60 CCATTACAAA TTTTCTGTGG CATGGCTTCC TGTTTGTCCT CAATGGCGAA CGCTTCGAAG 24233 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATTACAAA TTTTCTGTGG CATGGCTTCC TGTTTGTCCT CAATGGCGAA CGCTTCGAAG 120 AATATTGAAC ACTAACCTCT TATCTTCCAA TAAGCTTGAT GCAAATCAAC ATCTAAGGTC 24293 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATATTGAAC ACTAACCTCT TATCTTCCAA TAAGCTTGAT GCAAATCAAC ATCTAAGGTC 180 TCAAAAGGTG AAACAATTGA TTGATTATTG TGACAAATGT AGTCAACAAG GTGAAGCTTT 24353 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAAAGGTG AAACAATTGA TTGATTATTG TGACAAATGT AGTCAACAAG GTGAAGCTTT 240 GGATATAGGT CAAGTTGTTT TCAAGACTAG TCTTAATTTG TTGTCAAACA CACTTTTCTC 24413 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATATAGGT CAAGTTGTTT TCAAGACTAG TCTTAATTTG TTGTCAAACA CACTTTTCTC 300 CAAGGATTTG GCTGATCCTT TTTCAGATTC AAAGGTAGAG TTGAAGGAAG TTATATGGGG 24473 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGGATTTG GCTGATCCTT TTTCAGATTC AAAGGTAGAG TTGAAGGAAG TTATATGGGG 360 TATCATGGCT GAGGTAGGGA AGCCTAATTT AGTAGATTTT TTCCCCATAC TTGAAAAAAT 24533 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCATGGCT GAGGTAGGGA AGCCTAATTT AGTAGATTTT TTCCCCATAC TTGAAAAAAT 420 TGATCTTCAA GGAATAAGAC GTCGCGCTAT CATTCATTTT GGTAAGTTGT TTAAACTTTT 24593 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATCTTCAA GGAATAAGAC GTCGCGCTAT CATTCATTTT GGTAAGTTGT TTAAACTTTT 480 TGATGATTTG ATCAACGAAC GATTGGAGGA AAAGAAAAGA CCAGGATTCA TGGAAAAGAG 24653 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATGATTTG ATCAACGAAC GATTGGAGGA AAAGAAAAGA CCAGGATTCA TGGAAAAGAG 540 CGATGTTCTT GAAATATTTC TCAATATTAC TGAAAAA 24690 |||||||||| |||||||||| |||||||||| ||||||| CGATGTTCTT GAAATATTTC TCAATATTAC TGAAAAA 577 hqPGS_C09HBa0033H16.1+_SGN-E278924+ (24114 24690) Total number of EST alignments reported: 49 ________________________________________________________________________________ Predicted gene locations (5) in segment 1 to 31276: PGL 1 (- strand): 340 202 AGS-1 (340 202) SCR (e 0.906) Exon 1 340 202 ( 139 n); score: 0.906 PGS (340 202) SGN-E551553- 3-phase translation of AGS-1 (-strand): . . . . . . 340 GCAACTAATGAACTTCCATCGAGAGTTTCCAGTAGCACGAATGGGCAAAATGTGCTGAGA A T N E L P S R V S S S T N G Q N V L R Q L M N F H R E F P V A R M G K M C - D N - - T S I E S F Q - H E W A K C A E . . . . . . 280 CTTGAACCACATTTGAACAAACACCTAAATGCAGTAGTAATTTATATACTTGTATATAAA L E P H L N K H L N A V V I Y I L V Y K L N H I - T N T - M Q - - F I Y L Y I K T - T T F E Q T P K C S S N L Y T C I - . . 220 AGGGAATTTATGTTCTCTT R E F M F S G N L C S L K G I Y V L Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 202 AAGAGAACATAAATTCCCTTTTATATACAAGTATATAAATTACTACTGCATTTAGGTGTT K R T - I P F Y I Q V Y K L L L H L G V R E H K F P F I Y K Y I N Y Y C I - V F E N I N S L L Y T S I - I T T A F R C . . . . . . 262 TGTTCAAATGTGGTTCAAGTCTCAGCACATTTTGCCCATTCGTGCTACTGGAAACTCTCG C S N V V Q V S A H F A H S C Y W K L S V Q M W F K S Q H I L P I R A T G N S R L F K C G S S L S T F C P F V L L E T L . . 322 ATGGAAGTTCATTAGTTGC M E V H - L W K F I S C D G S S L V Maximal non-overlapping open reading frames (>= 64 codons): none PGL 2 (- strand): 1307 694 AGS-1 (1307 694) SCR (e 1.000) Exon 1 1307 694 ( 614 n); score: 1.000 PGS (1301 694) SGN-E266236+ PGS (1304 697) SGN-E551559+ PGS (1304 697) SGN-E553752+ PGS (1301 697) SGN-E352697+ PGS (950 697) SGN-E552461+ PGS (1156 698) SGN-E212403+ PGS (1091 698) SGN-E557055+ PGS (1196 699) SGN-E352159+ PGS (1305 700) SGN-E553871+ PGS (1301 711) SGN-E354030+ PGS (1305 717) SGN-E357600+ PGS (1301 717) SGN-E266444+ PGS (1307 721) SGN-E309170+ PGS (1253 722) SGN-E348694+ PGS (1273 751) SGN-E287327+ PGS (1298 759) SGN-E357825+ PGS (1296 884) SGN-E243257+ 3-phase translation of AGS-1 (-strand): . . . . . . 1307 AAAAAAATCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTC K K I P N L Q W Q N P Q K F S H Q S S F K K S P I S N G K I H K N S L I N P H S K N P Q S P M A K S T K I L S S I L I . . . . . . 1247 TCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAA S S S F S V Y F L H Q T H - A E S S A E L L H F Q S I F F I K R I R R K A R R K L F F I F S L F S S S N A L G G K L G G . . . . . . 1187 GAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTG E H K S K T - K Q I R K F K I - V S T V N T N Q K R E N K S G N S R S R - V L C R T Q I K N V K T N Q E I Q D L G K Y C . . . . . . 1127 TCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTT S K N T T E I C G I S M V L - V L Y - V R R T Q Q R F A A Y Q W C F E F F I E F V E E H N R D L R H I N G A L S S L L S . . . . . . 1067 TTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAA F L K L L K Q K N K L F L V L N I I - K F S S C - S R K T S C F W C - I L S K N F S Q V V E A E K Q V V S G V K Y Y L K . . . . . . 1007 TCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTA S Q L L L N H L A H Q N C S M L L L L L L S Y C - I I - L T K I V R C C C C C - I S A I V K S S S S P K L F D A V V V V . . . . . . 947 AAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAA K L G R R R R N C L R F L L L L H R L Q S L G E E E G I A Y V F S F S F T G Y K K A W E K K K E L L T F S P S P S P A T . . . . . . 887 AGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTG S E F S M V D S G - K L K L L V V L M L V N F R W L I V A K S - N F - - C - C C K - I F D G - - W L K V K T S S S A N V . . . . . . 827 TTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTG F N L I L K Y F N L - P F Y F F - P I L L I - F - S T L I C S L F I F F N L F - V - S N F E V L - F V A F L F F L T Y F . . . . . . 767 AGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTA S S L V Y Y V M Q - S M N D I C I S M L V L L C T M - C N N Q - M T Y V L V C Y E F S C V L C D A I I N E - H M Y - Y V . . 707 TTATAGATAAATTA L - I N Y R - I I I D K L Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0033H16.1-_PGL-2_AGS-1_PPS_1 (1305 883) (frame '0'; 420 bp, 140 residues) 1 KNPQSPMAKS TKILSSILIL FFIFSLFSSS NALGGKLGGR TQIKNVKTNQ EIQDLGKYCV 61 EEHNRDLRHI NGALSSLLSF SQVVEAEKQV VSGVKYYLKI SAIVKSSSSP KLFDAVVVVK 121 AWEKKKELLT FSPSPSPATK - 3-phase translation of AGS-1 (+strand): . . . . . . 694 TAATTTATCTATAATAACATACTAATACATATGTCATTCATTGATTATTGCATCACATAG - F I Y N N I L I H M S F I D Y C I T - N L S I I T Y - Y I C H S L I I A S H S I Y L - - H T N T Y V I H - L L H H I . . . . . . 754 TACACAAGAGAACTCAAAATAGGTTAAAAAAAATAAAAAGGCTACAAATTAAAGTACTTC Y T R E L K I G - K K - K G Y K L K Y F T Q E N S K - V K K N K K A T N - S T S V H K R T Q N R L K K I K R L Q I K V L . . . . . . 814 AAAATTAGATTAAACAACATTAGCACTACTAGAAGTTTTAACTTTTAGCCACTATCAACC K I R L N N I S T T R S F N F - P L S T K L D - T T L A L L E V L T F S H Y Q P Q N - I K Q H - H Y - K F - L L A T I N . . . . . . 874 ATCGAAAATTCACTTTGTAGCCGGTGAAGGAGAAGGAGAAAACGTAAGCAATTCCTTCTT I E N S L C S R - R R R R K R K Q F L L S K I H F V A G E G E G E N V S N S F F H R K F T L - P V K E K E K T - A I P S . . . . . . 934 CTTCTCCCAAGCTTTAACAACAACAACAGCATCGAACAATTTTGGTGAGCTAGATGATTT L L P S F N N N N S I E Q F W - A R - F F S Q A L T T T T A S N N F G E L D D L S S P K L - Q Q Q Q H R T I L V S - M I . . . . . . 994 AACAATAGCTGAGATTTTTAGATAATATTTAACACCAGAAACAACTTGTTTTTCTGCTTC N N S - D F - I I F N T R N N L F F C F T I A E I F R - Y L T P E T T C F S A S - Q - L R F L D N I - H Q K Q L V F L L . . . . . . 1054 AACAACTTGAGAAAAACTCAATAAAGAACTCAAAGCACCATTGATATGCCGCAAATCTCT N N L R K T Q - R T Q S T I D M P Q I S T T - E K L N K E L K A P L I C R K S L Q Q L E K N S I K N S K H H - Y A A N L . . . . . . 1114 GTTGTGTTCTTCGACACAGTACTTACCTAGATCTTGAATTTCCTGATTTGTTTTCACGTT V V F F D T V L T - I L N F L I C F H V L C S S T Q Y L P R S - I S - F V F T F C C V L R H S T Y L D L E F P D L F S R . . . . . . 1174 TTTGATTTGTGTTCTTCCGCCGAGCTTTCCGCCTAATGCGTTTGATGAAGAAAATAGACT F D L C S S A E L S A - C V - - R K - T L I C V L P P S F P P N A F D E E N R L F - F V F F R R A F R L M R L M K K I D . . . . . . 1234 GAAAATGAAGAAGAGAATGAGGATTGATGAGAGAATTTTTGTGGATTTTGCCATTGGAGA E N E E E N E D - - E N F C G F C H W R K M K K R M R I D E R I F V D F A I G D - K - R R E - G L M R E F L W I L P L E . . 1294 TTGGGGATTTTTTT L G I F W G F F I G D F F Maximal non-overlapping open reading frames (>= 64 codons): none PGL 3 (+ strand): 17754 18564 AGS-1 (17754 18564) SCR (e 0.878) Exon 1 17754 18564 ( 811 n); score: 0.878 PGS (17754 18281) SGN-E300235+ PGS (17754 18257) SGN-E305501+ PGS (17754 18097) SGN-E310265+ PGS (17757 18331) SGN-E390674+ PGS (17757 18288) SGN-E390673+ PGS (17757 18282) SGN-E302472+ PGS (17758 18209) SGN-E294327+ PGS (17758 18209) SGN-E294328+ PGS (17759 18382) SGN-E291872+ PGS (17759 18324) SGN-E291937+ PGS (17811 18419) SGN-E301544+ PGS (17912 18564) SGN-E335463+ PGS (17914 18351) SGN-E302969+ PGS (17957 18532) SGN-E278924+ 3-phase translation of AGS-1 (+strand): . . . . . . 17754 CAAAAATATGTAGCAAAGGAAACAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTA Q K Y V A K E T K N F H Q V H H H G Q L K N M - Q R K Q K T S T R S I T M A N Y K I C S K G N K K L P P G P S P W P I . . . . . . 17814 TTGGAAATCTTCACTTGTTAGGTACAAAATCCCAGGTATCTCTAGCCAATCTTGCAAAAA L E I F T C - V Q N P R Y L - P I L Q K W K S S L V R Y K I P G I S S Q S C K N I G N L H L L G T K S Q V S L A N L A K . . . . . . 17874 TTTATGGTCCAATTATGAGTTTAAAATTAGGACAAATAACAACAGTGGTTATTTCTTCAT F M V Q L - V - N - D K - Q Q W L F L H L W S N Y E F K I R T N N N S G Y F F I I Y G P I M S L K L G Q I T T V V I S S . . . . . . 17934 CAACCATTGCAAAACAAGTCCTCAAAATTCAAGATCAAGCTTTTTCAACATATAGATTTG Q P L Q N K S S K F K I K L F Q H I D L N H C K T S P Q N S R S S F F N I - I C S T I A K Q V L K I Q D Q A F S T Y R F . . . . . . 17994 TTCCTAATGCCATTCAAGCACATAACTATAGCAAATTCTCTGTGGCATTTCTTCATGTTT F L M P F K H I T I A N S L W H F F M F S - C H S S T - L - Q I L C G I S S C L V P N A I Q A H N Y S K F S V A F L H V . . . . . . 18054 GTCCTCAATGGCGAACGCTGCGCAAAATATTGAACAAAAATATCTTCTCTTCCAAAAGTC V L N G E R C A K Y - T K I S S L P K V S S M A N A A Q N I E Q K Y L L F Q K S C P Q W R T L R K I L N K N I F S S K S . . . . . . 18114 TTGATGCAAATCAACATCTAAGGTCTCAAAAAGTGAAAGAAATGATTGATTATTGTGAGA L M Q I N I - G L K K - K K - L I I V R - C K S T S K V S K S E R N D - L L - E L D A N Q H L R S Q K V K E M I D Y C E . . . . . . 18174 AATGTAGTGAACAAGGTAAAGTTGTGGATATAGGTCAAGTTGCTTTCAAGACTAGTCTTA N V V N K V K L W I - V K L L S R L V L M - - T R - S C G Y R S S C F Q D - S - K C S E Q G K V V D I G Q V A F K T S L . . . . . . 18234 ATTTGTTGTCAAATACCCTTTTCTCCAAGGATTTGGCTGACCCTTTTTCAGATTCGAAGG I C C Q I P F S P R I W L T L F Q I R R F V V K Y P F L Q G F G - P F F R F E G N L L S N T L F S K D L A D P F S D S K . . . . . . 18294 TGGAGTTGAAGGAAGTTATAAAGAATATCATTGATGAGATGGGGAATCCTAACCTAGTGG W S - R K L - R I S L M R W G I L T - W G V E G S Y K E Y H - - D G E S - P S G V E L K E V I K N I I D E M G N P N L V . . . . . . 18354 ATTTTTTCCCTATACTTGAAAAGTTTGATCTTCAAGGAATAAAGCGTCGTACAACCATTC I F S L Y L K S L I F K E - S V V Q P F F F P Y T - K V - S S R N K A S Y N H S D F F P I L E K F D L Q G I K R R T T I . . . . . . 18414 ATATTGGTAAATTGTTTAAGCTTTTTGATGGTTTGATCAACGAACGATTGGAGGAAAAGA I L V N C L S F L M V - S T N D W R K R Y W - I V - A F - W F D Q R T I G G K E H I G K L F K L F D G L I N E R L E E K . . . . . . 18474 GAAGGTTTCATAGTGAAAGAAGTGATGTTTTGGAAGTGTTTCTCAGTATTTGTGAAGAAA E G F I V K E V M F W K C F S V F V K K K V S - - K K - C F G S V S Q Y L - R K R R F H S E R S D V L E V F L S I C E E . . . . 18534 ATCCTCAAGAAATCAATCATAATCACATCAA I L K K S I I I T S S S R N Q S - S H Q N P Q E I N H N H I Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0033H16.1+_PGL-3_AGS-1_PPS_1 (17756 18562) (frame '0'; 807 bp, 269 residues) 1 KICSKGNKKL PPGPSPWPII GNLHLLGTKS QVSLANLAKI YGPIMSLKLG QITTVVISSS 61 TIAKQVLKIQ DQAFSTYRFV PNAIQAHNYS KFSVAFLHVC PQWRTLRKIL NKNIFSSKSL 121 DANQHLRSQK VKEMIDYCEK CSEQGKVVDI GQVAFKTSLN LLSNTLFSKD LADPFSDSKV 181 ELKEVIKNII DEMGNPNLVD FFPILEKFDL QGIKRRTTIH IGKLFKLFDG LINERLEEKR 241 RFHSERSDVL EVFLSICEEN PQEINHNHI 3-phase translation of AGS-1 (-strand): . . . . . . 18564 TTGATGTGATTATGATTGATTTCTTGAGGATTTTCTTCACAAATACTGAGAAACACTTCC L M - L - L I S - G F S S Q I L R N T S - C D Y D - F L E D F L H K Y - E T L P D V I M I D F L R I F F T N T E K H F . . . . . . 18504 AAAACATCACTTCTTTCACTATGAAACCTTCTCTTTTCCTCCAATCGTTCGTTGATCAAA K T S L L S L - N L L F S S N R S L I K K H H F F H Y E T F S F P P I V R - S N Q N I T S F T M K P S L F L Q S F V D Q . . . . . . 18444 CCATCAAAAAGCTTAAACAATTTACCAATATGAATGGTTGTACGACGCTTTATTCCTTGA P S K S L N N L P I - M V V R R F I P - H Q K A - T I Y Q Y E W L Y D A L F L E T I K K L K Q F T N M N G C T T L Y S L . . . . . . 18384 AGATCAAACTTTTCAAGTATAGGGAAAAAATCCACTAGGTTAGGATTCCCCATCTCATCA R S N F S S I G K K S T R L G F P I S S D Q T F Q V - G K N P L G - D S P S H Q K I K L F K Y R E K I H - V R I P H L I . . . . . . 18324 ATGATATTCTTTATAACTTCCTTCAACTCCACCTTCGAATCTGAAAAAGGGTCAGCCAAA M I F F I T S F N S T F E S E K G S A K - Y S L - L P S T P P S N L K K G Q P N N D I L Y N F L Q L H L R I - K R V S Q . . . . . . 18264 TCCTTGGAGAAAAGGGTATTTGACAACAAATTAAGACTAGTCTTGAAAGCAACTTGACCT S L E K R V F D N K L R L V L K A T - P P W R K G Y L T T N - D - S - K Q L D L I L G E K G I - Q Q I K T S L E S N L T . . . . . . 18204 ATATCCACAACTTTACCTTGTTCACTACATTTCTCACAATAATCAATCATTTCTTTCACT I S T T L P C S L H F S Q - S I I S F T Y P Q L Y L V H Y I S H N N Q S F L S L Y I H N F T L F T T F L T I I N H F F H . . . . . . 18144 TTTTGAGACCTTAGATGTTGATTTGCATCAAGACTTTTGGAAGAGAAGATATTTTTGTTC F - D L R C - F A S R L L E E K I F L F F E T L D V D L H Q D F W K R R Y F C S F L R P - M L I C I K T F G R E D I F V . . . . . . 18084 AATATTTTGCGCAGCGTTCGCCATTGAGGACAAACATGAAGAAATGCCACAGAGAATTTG N I L R S V R H - G Q T - R N A T E N L I F C A A F A I E D K H E E M P Q R I C Q Y F A Q R S P L R T N M K K C H R E F . . . . . . 18024 CTATAGTTATGTGCTTGAATGGCATTAGGAACAAATCTATATGTTGAAAAAGCTTGATCT L - L C A - M A L G T N L Y V E K A - S Y S Y V L E W H - E Q I Y M L K K L D L A I V M C L N G I R N K S I C - K S L I . . . . . . 17964 TGAATTTTGAGGACTTGTTTTGCAATGGTTGATGAAGAAATAACCACTGTTGTTATTTGT - I L R T C F A M V D E E I T T V V I C E F - G L V L Q W L M K K - P L L L F V L N F E D L F C N G - - R N N H C C Y L . . . . . . 17904 CCTAATTTTAAACTCATAATTGGACCATAAATTTTTGCAAGATTGGCTAGAGATACCTGG P N F K L I I G P - I F A R L A R D T W L I L N S - L D H K F L Q D W L E I P G S - F - T H N W T I N F C K I G - R Y L . . . . . . 17844 GATTTTGTACCTAACAAGTGAAGATTTCCAATAATTGGCCATGGTGATGGACCTGGTGGA D F V P N K - R F P I I G H G D G P G G I L Y L T S E D F Q - L A M V M D L V E G F C T - Q V K I S N N W P W - W T W W . . . . 17784 AGTTTTTTGTTTCCTTTGCTACATATTTTTG S F L F P L L H I F V F C F L C Y I F L K F F V S F A T Y F Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0033H16.1-_PGL-3_AGS-1_PPS_1 (18218 17997) (frame '2'; 219 bp, 73 residues) 1 KQLDLYPQLY LVHYISHNNQ SFLSLFETLD VDLHQDFWKR RYFCSIFCAA FAIEDKHEEM 61 PQRICYSYVL EWH- >C09HBa0033H16.1-_PGL-3_AGS-1_PPS_2 (18562 18347) (frame '0'; 213 bp, 71 residues) 1 DVIMIDFLRI FFTNTEKHFQ NITSFTMKPS LFLQSFVDQT IKKLKQFTNM NGCTTLYSLK 61 IKLFKYREKI H- PGL 4 (+ strand): 19563 19845 AGS-1 (19563 19845) SCR (e 0.982) Exon 1 19563 19845 ( 283 n); score: 0.982 PGS (19563 19845) SGN-E309339+ 3-phase translation of AGS-1 (+strand): . . . . . . 19563 ATGTGTGGGAAATTAATAGAGATTCTACTTTTTGGGAGGATCCCTTAGTGTTTAAACCTG M C G K L I E I L L F G R I P - C L N L C V G N - - R F Y F L G G S L S V - T - V W E I N R D S T F W E D P L V F K P . . . . . . 19623 AGAGGTTTTGGCATTCAAATTTAGACGTGCGAGGACAAGATTTTGAACTGATCCCATTTG R G F G I Q I - T C E D K I L N - S H L E V L A F K F R R A R T R F - T D P I W E R F W H S N L D V R G Q D F E L I P F . . . . . . 19683 GTGCGGGTAGAAGAATGTGCCCTGCCTTGCCACTTGCATTGCGAATGATTCCAGTCATGT V R V E E C A L P C H L H C E - F Q S C C G - K N V P C L A T C I A N D S S H V G A G R R M C P A L P L A L R M I P V M . . . . . . 19743 TGGGCTCACTCTTGAATTCCTTCAATTGGAAACTCGAGGCAGGCATTAGACCAGAAGACC W A H S - I P S I G N S R Q A L D Q K T G L T L E F L Q L E T R G R H - T R R P L G S L L N S F N W K L E A G I R P E D . . . . . 19803 TAGACATGGAGGAGAAATTTGGTTTGGCTTTAGTCAAAGCTCA - T W R R N L V W L - S K L R H G G E I W F G F S Q S S L D M E E K F G L A L V K A Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0033H16.1+_PGL-4_AGS-1_PPS_1 (19565 19843) (frame '0'; 279 bp, 93 residues) 1 VWEINRDSTF WEDPLVFKPE RFWHSNLDVR GQDFELIPFG AGRRMCPALP LALRMIPVML 61 GSLLNSFNWK LEAGIRPEDL DMEEKFGLAL VKA 3-phase translation of AGS-1 (-strand): . . . . . . 19845 TGAGCTTTGACTAAAGCCAAACCAAATTTCTCCTCCATGTCTAGGTCTTCTGGTCTAATG - A L T K A K P N F S S M S R S S G L M E L - L K P N Q I S P P C L G L L V - C S F D - S Q T K F L L H V - V F W S N . . . . . . 19785 CCTGCCTCGAGTTTCCAATTGAAGGAATTCAAGAGTGAGCCCAACATGACTGGAATCATT P A S S F Q L K E F K S E P N M T G I I L P R V S N - R N S R V S P T - L E S F A C L E F P I E G I Q E - A Q H D W N H . . . . . . 19725 CGCAATGCAAGTGGCAAGGCAGGGCACATTCTTCTACCCGCACCAAATGGGATCAGTTCA R N A S G K A G H I L L P A P N G I S S A M Q V A R Q G T F F Y P H Q M G S V Q S Q C K W Q G R A H S S T R T K W D Q F . . . . . . 19665 AAATCTTGTCCTCGCACGTCTAAATTTGAATGCCAAAACCTCTCAGGTTTAAACACTAAG K S C P R T S K F E C Q N L S G L N T K N L V L A R L N L N A K T S Q V - T L R K I L S S H V - I - M P K P L R F K H - . . . . . 19605 GGATCCTCCCAAAAAGTAGAATCTCTATTAATTTCCCACACAT G S S Q K V E S L L I S H T D P P K K - N L Y - F P T H G I L P K S R I S I N F P H Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0033H16.1-_PGL-4_AGS-1_PPS_1 (19842 19564) (frame '1'; 279 bp, 93 residues) 1 ALTKAKPNFS SMSRSSGLMP ASSFQLKEFK SEPNMTGIIR NASGKAGHIL LPAPNGISSK 61 SCPRTSKFEC QNLSGLNTKG SSQKVESLLI SHT PGL 5 (+ strand): 23855 25757 AGS-1 (23855 24735,24846 25127,25349 25757) SCR (e 1.000 d 0.994 a 0.999,e 0.996 d 0.999 a 0.626,e 1.000) Exon 1 23855 24735 ( 881 n); score: 1.000 Intron 1 24736 24845 ( 110 n); Pd: 0.994 Pa: 0.999 Exon 2 24846 25127 ( 282 n); score: 0.996 Intron 2 25128 25348 ( 221 n); Pd: 0.999 Pa: 0.626 Exon 3 25349 25757 ( 409 n); score: 1.000 PGS (23855 24252) SGN-E310265+ PGS (23860 24412) SGN-E305501+ PGS (23890 24436) SGN-E300235+ PGS (23915 24488) SGN-E390674+ PGS (23915 24444) SGN-E390673+ PGS (23915 24437) SGN-E302472+ PGS (23916 24364) SGN-E294327+ PGS (23916 24364) SGN-E294328+ PGS (23917 24537) SGN-E291872+ PGS (23917 24483) SGN-E291937+ PGS (23969 24574) SGN-E301544+ PGS (24070 24724) SGN-E335463+ PGS (24072 24507) SGN-E302969+ PGS (24114 24690) SGN-E278924+ PGS (24711 24735,24846 25127,25349 25757) SGN-E390928- PGS (24923 25127,25349 25757) SGN-E390927- 3-phase translation of AGS-1 (+strand): . . . . . . 23855 CTATGGATTACTATACACTTGTGTTTGTGTCAATTTTAGTGTTGGCTAATATCATAGCAA L W I T I H L C L C Q F - C W L I S - Q Y G L L Y T C V C V N F S V G - Y H S K M D Y Y T L V F V S I L V L A N I I A . . . . . . 23915 AAATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTG K Y V A K E A K N F H Q V H H H G Q L L N M - Q R K Q K T S T R S I T M A N Y W K I C S K G S K K L P P G P S P W P I I . . . . . . 23975 GAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATT E T F S C - V Q N L I Y H - P I L Q K I K P S V V R C K T S Y I T S Q S C K K L G N L Q L L G A K P H I S L A N L A K N . . . . . . 24035 ATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAA M V Q L - V - S - V K - Q Q - S F P H Q W S N Y E F K V R S N N N N S H F L I N Y G P I M S L K L G Q I T T I V I S S S . . . . . . 24095 CCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTA P L Q N K S L K L K I K P F H L D L L L H C K T S P - N S R S S L F I - I C S - T I A K Q V L K T Q D Q A F S S R F A P . . . . . . 24155 ATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTC M L F K R T T I T N F L W H G F L F V L C S S S A Q P L Q I F C G M A S C L S S N A L Q A H N H Y K F S V A W L P V C P . . . . . . 24215 AATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATG N G E R F E E Y - T L T S Y L P I S L M M A N A S K N I E H - P L I F Q - A - C Q W R T L R R I L N T N L L S S N K L D . . . . . . 24275 CAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTA Q I N I - G L K R - N N - L I I V T N V K S T S K V S K G E T I D - L L - Q M - A N Q H L R S Q K V K Q L I D Y C D K C . . . . . . 24335 GTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGT V N K V K L W I - V K L F S R L V L I C S T R - S F G Y R S S C F Q D - S - F V S Q Q G E A L D I G Q V V F K T S L N L . . . . . . 24395 TGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTCAGATTCAAAGGTAGAGT C Q T H F S P R I W L I L F Q I Q R - S V K H T F L Q G F G - S F F R F K G R V L S N T L F S K D L A D P F S D S K V E . . . . . . 24455 TGAAGGAAGTTATATGGGGTATCATGGCTGAGGTAGGGAAGCCTAATTTAGTAGATTTTT - R K L Y G V S W L R - G S L I - - I F E G S Y M G Y H G - G R E A - F S R F F L K E V I W G I M A E V G K P N L V D F . . . . . . 24515 TCCCCATACTTGAAAAAATTGATCTTCAAGGAATAAGACGTCGCGCTATCATTCATTTTG S P Y L K K L I F K E - D V A L S F I L P H T - K N - S S R N K T S R Y H S F W F P I L E K I D L Q G I R R R A I I H F . . . . . . 24575 GTAAGTTGTTTAAACTTTTTGATGATTTGATCAACGAACGATTGGAGGAAAAGAAAAGAC V S C L N F L M I - S T N D W R K R K D - V V - T F - - F D Q R T I G G K E K T G K L F K L F D D L I N E R L E E K K R . . . . . . 24635 CAGGATTCATGGAAAAGAGCGATGTTCTTGAAATATTTCTCAATATTACTGAAAAAAATC Q D S W K R A M F L K Y F S I L L K K I R I H G K E R C S - N I S Q Y Y - K K S P G F M E K S D V L E I F L N I T E K N . . . . . : . 24695 CTCAAGAGATTGATCATAATCACATCAAGTCCATGTTCATG : GACCTATTTGGTGCGGGTA L K R L I I I T S S P C S W : T Y L V R V S R D - S - S H Q V H V H : G P I W C G Y P Q E I D H N H I K S M F M : D L F G A G . . . . . . 24865 CTGATACAACCACAAGCACATTGGAATGGGCAATGGCAGAATTGCTTAAACAACCTGAGA L I Q P Q A H W N G Q W Q N C L N N L R - Y N H K H I G M G N G R I A - T T - D T D T T T S T L E W A M A E L L K Q P E . . . . . . 24925 TAATAAAAAAAGCTCAAGTTGAACTTGCTGAAATCATTGGGAAAGGAAAATTAATAGAAG - - K K L K L N L L K S L G K E N - - K N K K S S S - T C - N H W E R K I N R R I I K K A Q V E L A E I I G K G K L I E . . . . . . 24985 AAGCTGATGTTTTTCGACTCCCTTACTTGCAATGCATTATCAAAGAAACATTAAGATTGC K L M F F D S L T C N A L S K K H - D C S - C F S T P L L A M H Y Q R N I K I A E A D V F R L P Y L Q C I I K E T L R L . . . . . . 25045 ATCCACCGGTTCCGCTCTTAGTTCCGCGCAAAGTAGACCAAGATGTTGAATTGTGTGACT I H R F R S - F R A K - T K M L N C V T S T G S A L S S A Q S R P R C - I V - L H P P V P L L V P R K V D Q D V E L C D . . . : . . . 25105 ACATCATCCCAAAGGGCTCACAG : GTACTAGTTAATGTGTGGGCGATTGGTCGAGATTTTA T S S Q R A H R : Y - L M C G R L V E I L H H P K G L T : G T S - C V G D W S R F Y Y I I P K G S Q : V L V N V W A I G R D F . . . . . . 25386 CTTTTTGGAAGGATCCTTTAGAGTTTAAACCTGAGAGATTTTTGAATTTGGATCTGGACA L F G R I L - S L N L R D F - I W I W T F L E G S F R V - T - E I F E F G S G H T F W K D P L E F K P E R F L N L D L D . . . . . . 25446 TGCGAGGACAAGATTTTGAGTTGATTCCATTTGGTGCTGGACGAAGAATATGCCCTGGGT C E D K I L S - F H L V L D E E Y A L G A R T R F - V D S I W C W T K N M P W V M R G Q D F E L I P F G A G R R I C P G . . . . . . 25506 TGCCACTAGCATTGAGGATGATTCCAGTAATGTTGGGCTCACTGTTGAATTCATTCAATT C H - H - G - F Q - C W A H C - I H S I A T S I E D D S S N V G L T V E F I Q L L P L A L R M I P V M L G S L L N S F N . . . . . . 25566 GGAAACTTGATGCAGGTATTGAGCCACAAGAATTAGACATGGAGGAGAAGTTTGGTATTA G N L M Q V L S H K N - T W R R S L V L E T - C R Y - A T R I R H G G E V W Y Y W K L D A G I E P Q E L D M E E K F G I . . . . . . 25626 CCTTAGCCAAAGCTCATCCTTTGCGAGCTATCCCCTCTCCTCTTTGATCGATGTTGCATT P - P K L I L C E L S P L L F D R C C I L S Q S S S F A S Y P L S S L I D V A L T L A K A H P L R A I P S P L - S M L H . . . . . . 25686 GCCTAGTCGATAAATATTTATATGTATTTGATATTTACGCTGAAGCAAGTATTTTAATCT A - S I N I Y M Y L I F T L K Q V F - S P S R - I F I C I - Y L R - S K Y F N L C L V D K Y L Y V F D I Y A E A S I L I . . 25746 AAATAATCATAT K - S Y N N H - I I I Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0033H16.1+_PGL-5_AGS-1_PPS_1 (23857 24735,24846 25127,25349 25672) (frame '0'; 1482 bp, 494 residues) 1 MDYYTLVFVS ILVLANIIAK ICSKGSKKLP PGPSPWPIIG NLQLLGAKPH ISLANLAKNY 61 GPIMSLKLGQ ITTIVISSST IAKQVLKTQD QAFSSRFAPN ALQAHNHYKF SVAWLPVCPQ 121 WRTLRRILNT NLLSSNKLDA NQHLRSQKVK QLIDYCDKCS QQGEALDIGQ VVFKTSLNLL 181 SNTLFSKDLA DPFSDSKVEL KEVIWGIMAE VGKPNLVDFF PILEKIDLQG IRRRAIIHFG 241 KLFKLFDDLI NERLEEKKRP GFMEKSDVLE IFLNITEKNP QEIDHNHIKS MFMDLFGAGT 301 DTTTSTLEWA MAELLKQPEI IKKAQVELAE IIGKGKLIEE ADVFRLPYLQ CIIKETLRLH 361 PPVPLLVPRK VDQDVELCDY IIPKGSQVLV NVWAIGRDFT FWKDPLEFKP ERFLNLDLDM 421 RGQDFELIPF GAGRRICPGL PLALRMIPVM LGSLLNSFNW KLDAGIEPQE LDMEEKFGIT 481 LAKAHPLRAI PSPL- ... finished at: Tue Aug 29 00:45:27 2006