GeneSeqer. Version of March 12, 2006. Date run: Mon Aug 28 23:52:31 2006 (Bayesian) Splice site model (species): Arabidopsis thaliana Fast search parameters: MinMatchLen 16, MinQualityHSP 30, MinQualityCHAIN 50. Total number of ESTs: 175665 Total sequence length: 93213537 Minimum sequence length: 89 Maximum sequence length: 1082 Length distribution (number of sequences of specified length): < 100: 1 < 200: 2188 < 300: 8544 < 400: 20465 < 500: 39499 < 600: 49432 < 700: 32872 < 800: 19308 < 900: 3155 < 1000: 193 >=1000: 8 Input file : /tmp/bac-submission-temp-OyfAO/C09HBa0047I13/C09HBa0047I13.seq.screen ________________________________________________________________________________ Sequence 1: C09HBa0047I13.1, from 1 to 100810, both strands analyzed. ... started at: Tue Aug 29 00:16:50 2006 EST library file: /tmp/cxgn-bacpublish-resources-Gu2fBE/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 6 ... matches indexed, elapsed seconds = 6 HitsTableSize = 26 EST library file: /tmp/cxgn-bacpublish-resources-Gu2fBE/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 6 ... matches indexed, elapsed seconds = 6 HitsTableSize = 44 ******************************************************************************** EST sequence 31 -strand 752 n (File: SGN-E213530-) 1 GGGGGGGGGG GGTGGGGGGA AATTACTTGG ATGAATACAT TTTAATAAAT AATTACTGAT 61 TTTAGCGATA CTTTTTATTT ATTACCATTT NGTANCAATA CATAGCAATA CTATGTTAAA 121 TCTGCAATAT GCATTTACAG TGAATATGTA TGCAATATAT ATGTATTATG ACTTTTTTTA 181 AAAATATATT ATGCTTGTTT GGTAAGAAAT GACACATTGT GTTACAAGTG TATTAAAATG 241 AGTGATAAAT GTATTATTCA TCAATTTTAT ATGTGAATAA TAAATTGTTC CCCGTAATAT 301 GTATTAGAAC TTTATTATAA TGTATTAAAA GTGATCAAGT AAAAACAAAT GTTATTGCTA 361 TAAATGGTAA ATATTTTTTT AATATAGTAT ATTTATGTAA GTTTCCCTTT ATATTTTTTG 421 ATATATTGGT GTCAAGGCCC GCTTTCAAAC CTCAGCTAAT TCCACGGGAT ACCTGCCCAC 481 CTCTCATTAC ACTGTCCACT AAGGATGTTC AGGCTAGAAC AGATGTGAAG AAATCACCTA 541 GTGTTCTTCT TTCGTCTCTA CGGTGATTTG AACTAGAGAC CTCATGGTTC TCAACCGACT 601 TGATTGACCA CTAGGCCACA ACCTTGGGTG TAATTGAACA GAATTAACAC TCAAATATTT 661 TTAACATTTT GACAAAAAGA CACAAATATT TTGATCTACA GGAAAGAGAT TTTCTTTTTG 721 AGATGGAACA GGAAAGAGAA AATTCATACC TT Predicted gene structure (within gDNA segment 1491 to 10062): Exon 1 2532 2870 ( 339 n); cDNA 82 409 ( 328 n); score: 0.792 Intron 1 2871 7345 (4475 n); Pd: 0.000 (s: 0.82), Pa: 0.733 (s: 0) Exon 2 7346 7356 ( 11 n); cDNA 410 420 ( 11 n); score: 0.818 Intron 2 7357 7886 ( 530 n); Pd: 0.000 (s: 0), Pa: 0.949 (s: 0) Exon 3 7887 7907 ( 21 n); cDNA 421 441 ( 21 n); score: 0.524 Intron 3 7908 8998 (1091 n); Pd: 0.000 (s: 0), Pa: 0.305 (s: 0) Exon 4 8999 9006 ( 8 n); cDNA 442 449 ( 8 n); score: 0.875 MATCH C09HBa0047I13.1+ SGN-E213530- 0.792 379 0.504 C PGS_C09HBa0047I13.1+_SGN-E213530- (2532 2870,7346 7356,7887 7907,8999 9006) Alignment (genomic DNA sequence = upper lines): TTTTTATTTA TTATC-ATTT ATAGCAATAC TATGTTAAAT CTACAATATG TATTAAAAGT 2590 || |||| || | || |||||||||| |||||||||| || ||||||| ||| | ||| TTACCATTTN GTANCAATAC ATAGCAATAC TATGTTAAAT CTGCAATATG CATTTACAGT 141 AAATTAAGTA TGCAATATAT ATGTATTGT- AATTGTTTTA GAAGTACATT ATGCTTGTTT 2649 || || ||| |||||||||| ||||||| | | || ||||| || || ||| |||||||||| GAA-TATGTA TGCAATATAT ATGTATTATG ACTTTTTTTA AAAATATATT ATGCTTGTTT 200 GGTAAGAAGT TGATACATTG TATTATAAAT ATATATTAAA ATGTGTGATA AATGTATTAT 2709 |||||||| ||| |||||| | ||| || | ||||||| ||| |||||| |||||||||| GGTAAGAA-A TGACACATTG TGTTA-CAA- GTGTATTAAA ATGAGTGATA AATGTATTAT 257 CCATCAACAG TACTTGTATT GTATGTGAAT AATAAATTAT TCTTTGTAAC ATGAATTAAA 2769 |||| | | | || || ||||||||| |||||||| | || |||| ||| |||| | TCATC-A-A- T--TT-TA-- -TATGTGAAT AATAAATTGT TCCCCGTAAT ATGTATTAGA 308 AGTGTATTAT AAATATATTA AAA-TGATCA AGTAAAAAAA AATATTATTG CTACGAATGA 2828 | | |||||| ||| ||||| ||| |||||| |||||||| | ||| |||||| ||| |||| ACTTTATTAT -AATGTATTA AAAGTGATCA AGTAAAAACA AATGTTATTG CTATAAATGG 367 TAAATATTTT TTTTTTATTG TATATTTATA CAAGTTTCCC ATCTAACTTT CTCATTTTAC 2888 |||||||||| ||| ||| | ||||||||| ||||||||| | TAAATATTTT TTTAATATAG TATATTTATG TAAGTTTCCC TT........ .......... 409 TCTTATTATT ATTTGTATTA ATGCTAATCC CTTTTTGTTT GATTTGATTT AACTTAATTA 2948 .......... .......... .......... .......... .......... .......... 409 AATTCCTAAA AGATGAGGTA TATTCTTTAT GCTAATTTAT TTTATATTTT GATAAATTCT 3008 .......... .......... .......... .......... .......... .......... 409 TATATTTATA TTCAATATAT TTAGTCAAAA CTTCTCACTC ATTTTTTAAT TAATTAATAA 3068 .......... .......... .......... .......... .......... .......... 409 TATTTTTCAT ATCTTAATTG ATCAAATAGA TTAAAAAAAT GTTAATTACT CTAGTTTTGT 3128 .......... .......... .......... .......... .......... .......... 409 TCAATTCTAT TCACTTATAA TTAATTTCTA GAAATTATAA TTAAGGTTCC ATTTTCTTAG 3188 .......... .......... .......... .......... .......... .......... 409 TAATAAAAAT AAAAATTGTT CTTTGTTTAA ATATTTGTTA ATTAGATATT GTTAATTATT 3248 .......... .......... .......... .......... .......... .......... 409 ATATTATATT AAATCATGTT CTTAAGAATA GTCAAAGTAT TTTAATCAGT CATAGAATAA 3308 .......... .......... .......... .......... .......... .......... 409 TCGTGTGTTT GCAAACGCTT CAAATGTCTT AAAAACCTTC TTGAAGCATA AAGAAGTACT 3368 .......... .......... .......... .......... .......... .......... 409 TCTTACCCAT TTTATCTGAA TTTATAAAGA TTTAATCATT TAAAAAAAAT TTAAATTAAG 3428 .......... .......... .......... .......... .......... .......... 409 TTTTCTTAAT TTCTTTTAAA AATTAAGTGG CAACTCTTTC TAAGTATTTA TCTCAAATTA 3488 .......... .......... .......... .......... .......... .......... 409 TTTATACTTA GATTACAAAA AGTGATTTTT CTAAAGATAG TAAAATTACG GCATAACGAC 3548 .......... .......... .......... .......... .......... .......... 409 ATTCCGGCAT AACTAACTAC GATCTATTGC CACTTTCCGG CATAAAGATG AGATCGGTTG 3608 .......... .......... .......... .......... .......... .......... 409 CCACATTCCG ACATAACTAT GTTAGGATCG AATGCGCACA CACACACACT TGATGAATTA 3668 .......... .......... .......... .......... .......... .......... 409 AGAACACAAG AACTTTCAAG AGAAAGAGAT AAGAGATCTA GAGAGAGAAA GAGAGAAACC 3728 .......... .......... .......... .......... .......... .......... 409 AATATTTCGT GGTAACACCC CGTGAGTAAA CTTCCACGGT GGTGTGGTAT ATATATATAT 3788 .......... .......... .......... .......... .......... .......... 409 ATTAATAAAT CAAAGTATTT TTGGTTACAG AGAATAAATG GAGAATAAAT AGTACAACCT 3848 .......... .......... .......... .......... .......... .......... 409 ATCAGGTCTA GTGCAGACCA TAACACTCAC CAAACTACAA ATTGCTAAAG CATATGGAAC 3908 .......... .......... .......... .......... .......... .......... 409 AAGTGCCATA TGATTACGCT CCTCGACAGT CTTGGGTGAC TGCTCCTTTG ACAATTTAAA 3968 .......... .......... .......... .......... .......... .......... 409 GTGATTTGCC AATGGAGTAG TCCTGGGTTT AGCATCATTA ACCCTGAATC TGCTCAGCAC 4028 .......... .......... .......... .......... .......... .......... 409 CTTCTCAATG TACAACTCCT GAGATAGATT TAAAGTGCAA GCAGATCTAT CCCGAGAAAT 4088 .......... .......... .......... .......... .......... .......... 409 CTTCATCCCC AAAATCTGCT TCGCTGGACC CAAATCTTTC ATCTCAAACG CTGCAGACAA 4148 .......... .......... .......... .......... .......... .......... 409 CCTTGTCCAG ATTGTTGTTC TCCCTCATAC TAGATCCTTC AATCAACATA TCATCCAGAT 4208 .......... .......... .......... .......... .......... .......... 409 ACAAGAGTAG AAAGACATAT GAATTAGTGT ATTTCTTGAA GTAACAACAA GGATCCTTTT 4268 .......... .......... .......... .......... .......... .......... 409 CAGCTTTGCA GAATTCACTC TTGGTCATGA AGGAGTCAAA CTTCTTGTAC CACTGCCTTG 4328 .......... .......... .......... .......... .......... .......... 409 GTGCTTGCTT TAGTCCATAC AAGCTCCTGG TGAGCTTGCA CACCATGTGT TCCTTGCCTG 4388 .......... .......... .......... .......... .......... .......... 409 GAACCACAAA TCCTTTCGGC TGTTGCATAT AGATCTCTTT GTCCAGATCT CCATGTAAAA 4448 .......... .......... .......... .......... .......... .......... 409 ACACTGTTTT TTCATCCATT TGCTCTAGAT GCATATTCTC CGATGCAACA ATAATCAATA 4508 .......... .......... .......... .......... .......... .......... 409 GAATTCGAAT AGAGGTTAAC TTCACAACAG GAGAAAATAT TTCAGCATAA TCAGTTGCTT 4568 .......... .......... .......... .......... .......... .......... 409 ATCCTTTAAC CACTAAATGA GCCTTGAACC TTCTTTTGCC ATCTGGTTAA GTCTTGATTC 4628 .......... .......... .......... .......... .......... .......... 409 TGAACACCCA CTTGTTCAAC AAAGCTCTCT TCCCTGCAGG TAAATCAGTC AACACCCATG 4688 .......... .......... .......... .......... .......... .......... 409 TGTCGTTTTT CTCAAGTGAC CTCATTTCAT CATCCATGGC TAACTCCCAC TTGATCGAAT 4748 .......... .......... .......... .......... .......... .......... 409 CCTCCACCTG TAGGGCCTCA TCAAAAGACT CTGGTTCCCC CTCATCAATA AGCAATAGAT 4808 .......... .......... .......... .......... .......... .......... 409 AGTGTAATGA ATGTGAATAC CTATCTGGTG CCCTGATGGT TCTGGATGAT CTCCTTAACA 4868 .......... .......... .......... .......... .......... .......... 409 CCTGCTCACG TGTAACTTCT TCAGATTCTT CAGTAGGAGT TGGTTGAGTA TCTGCTTCGA 4928 .......... .......... .......... .......... .......... .......... 409 CATTTATGGG TTACTCTTCT CCAACTCAAC CTCAACTCCC ACTTGCTTTG TAATCTCTAG 4988 .......... .......... .......... .......... .......... .......... 409 AACCTTCTGC TCTTTGTCCT TGTACATGAC AGACTCATCA AATGTCACAT CACAATGTCT 5048 .......... .......... .......... .......... .......... .......... 409 CAGAATCTTT CTATTCTTGT CATCCCAAAA CCTGTAACCA AACAAATTAG AACCATAGCC 5108 .......... .......... .......... .......... .......... .......... 409 TATGAGGTAA CATTTCACAG CCTTGACATT AAGCTTGTTT CTCTTTTCTG GATCAACATG 5168 .......... .......... .......... .......... .......... .......... 409 AACATAAGTA GTGCAACCAA AAGTCCTCAA GTGTGAGTAC TTGAGTTCTT TTCTTATCCA 5228 .......... .......... .......... .......... .......... .......... 409 CACCTCCTCT AGAATCTTGA ACCCTAAAGG AACTGATGGT CCCCTGTTGA TCAAGTATGC 5288 .......... .......... .......... .......... .......... .......... 409 AACTGTGCTC ACAACATTCG CCCAAAATGT TTTGGGCATC CCACAGTTTA TCCTCATACT 5348 .......... .......... .......... .......... .......... .......... 409 CCTTGCATGC TCATTCAATA TTTTGTTCAT CCTCTCATCA ATTCCATTCT GCCTTGCCTT 5408 .......... .......... .......... .......... .......... .......... 409 ACCAGGAACT GCTCTCATCA ATCTGATTCC CTTAGCTGCA CAAAATGCCG TGAACTATGA 5468 .......... .......... .......... .......... .......... .......... 409 TTTGTCATAC TCTCCTCCAT TGTCAGACCT TAGGCGTTTG ACTTTCAAGC TGCTCTGATT 5528 .......... .......... .......... .......... .......... .......... 409 CTCAACTTCA GCTTTCCACT TCTTGAAAGT TGCAAACACA TCTGAATTAT GCTTCAAGAA 5588 .......... .......... .......... .......... .......... .......... 409 GTAAACCCAT ACCTTCCTGC TGAAATCATA AATGAAGGTA ACATAGAATC TGGATCCTCC 5648 .......... .......... .......... .......... .......... .......... 409 AAGTGATGAT ACTGGAGATG GTCCCCAAAC ATCTGTATGG GTCATTTTCA ACAGCACTTT 5708 .......... .......... .......... .......... .......... .......... 409 CTATGGCTCT CTAGGAGTCT TTGTGAAGCT TACTCTTTTC TGTTTGCCCA TAACACAGCT 5768 .......... .......... .......... .......... .......... .......... 409 CTCGCAAAGA CCCATATCAA AAGACTTTAG ACCCTCTAAT GCTCCTTTTG CAACTAACAT 5828 .......... .......... .......... .......... .......... .......... 409 CTTCATTCCT TTAGCACTCA TGTGTCCAAG TCTGTTGTGC CACAGACATG AACCGGAAAC 5888 .......... .......... .......... .......... .......... .......... 409 ACTTTCAGCA ACAACGTCCA TGTTAATACA CCCTAGAGTT GTGTACAAGG TTCCAGAATT 5948 .......... .......... .......... .......... .......... .......... 409 GGTGCCACGA GCTACTACTA TAACACCTTT CACAATCTTC CACGAACCTT TCCCAAACAC 6008 .......... .......... .......... .......... .......... .......... 409 TGCTGCATAT CCCGTGCTAT CGAACTGACC AACAGAGATC AGATTTTTCT TGATCCCAGG 6068 .......... .......... .......... .......... .......... .......... 409 AATATATCTG ACATCATCCA ATGTCCGCTG GTTTCTCAAG GTGGTCTTTA TGCAAACATC 6128 .......... .......... .......... .......... .......... .......... 409 CCCCTTTCCT TCAATCTCTA AGGCTTTATT GTCAGCAAGA TACACCTTTC CAAAATTTCC 6188 .......... .......... .......... .......... .......... .......... 409 ATATTTGAAA TTTTTGAACA ACTCCTTGCT TGGAGACGAA TGGGAAAGAT GCACCAGAAT 6248 .......... .......... .......... .......... .......... .......... 409 CCAAAATCCA TGATTCAACA GGGCTGTTTA CACTAAGAAT TAGAGCATCC CCAATGTCCT 6308 .......... .......... .......... .......... .......... .......... 409 CTGTTGAATT TACAGAATCA TTGTCATCTC CAAATTTTTG ATTCTGTTTC TTCTTTGGCT 6368 .......... .......... .......... .......... .......... .......... 409 TTGTATAGCT CGTCCAAAAG TGTCATTTTT CTCCACAATT CAAACAAGTC ACGTTTGATC 6428 .......... .......... .......... .......... .......... .......... 409 TGTTCGGAGG TTTTCCTCAA TTCTTTGATT TTGATCAACC ATGTTGATTT GTCCTTTCGT 6488 .......... .......... .......... .......... .......... .......... 409 CTTACTTCTC CGCCTTCAGT TAACGCTGAG AGCACTGCCC GATGAATCTC TCACTTCTCG 6548 .......... .......... .......... .......... .......... .......... 409 TTTGCGAATA CTTTTGCTAA GAACAACATC ACGTATTTCA TCAAACTTCA GTTTTTCAGA 6608 .......... .......... .......... .......... .......... .......... 409 TCCACGGGAA CTACTAATCA CAGCAACAAC AGTATCCCAA GACTCGGGCA GAGATGACAT 6668 .......... .......... .......... .......... .......... .......... 409 CAAAATCAAC GCCTTAATTT CATCTTCGAA ATTAATATCC ACAGAATTGA GTTGACTCAC 6728 .......... .......... .......... .......... .......... .......... 409 AATAATATTG AACTCGTTTA TATGATCAGA AACGGATCCA TTCTCAGACA TTTGTAAATT 6788 .......... .......... .......... .......... .......... .......... 409 GAACATCTAC GCATCAAATA TACCTTGTTC ATTGCCGATA GTTTTTCATA CATGTTTGAC 6848 .......... .......... .......... .......... .......... .......... 409 AGTGCCTTCA ACAGACCGGA CGTAGTCTTC TCCTTCACGA TGTGTAACGC CACGTTTCTT 6908 .......... .......... .......... .......... .......... .......... 409 GACAAAGTCA ACCGAATCAA CCCTAGAGCC TAGCGATCCT TGAGTTTCCA CTTCTCCTCC 6968 .......... .......... .......... .......... .......... .......... 409 GTCATGGATT TTGGTTTCAC CCCGGTCAAC GATTCGTGAA GATCTTTCTG GTACAGATAA 7028 .......... .......... .......... .......... .......... .......... 409 TCTTCGATCT GCATCTTCCA GATTCTGAAA TCGGATCCAT CAAACTTCTC GATTTCAAGC 7088 .......... .......... .......... .......... .......... .......... 409 TTCGAACTAT CCATCTTCAG TGATCTTGTT GAATCTCCTT AGCTCTGATA CCAGTTGTTT 7148 .......... .......... .......... .......... .......... .......... 409 GGATCGAATG CACACACACA CATTTGATGA ATTAAGAACA CAAGAGAAAG AGATAAAAGA 7208 .......... .......... .......... .......... .......... .......... 409 TCTAGAGAGA GAAAGAGAGA AACCAATATT TTGTGGTAAC ACCCCATGAG TAAACTTCCA 7268 .......... .......... .......... .......... .......... .......... 409 CGGCGGTGGG GTGTATATAT ATATATATAT ATATATATAT ATATATATAT ATATATATAT 7328 .......... .......... .......... .......... .......... .......... 409 ATATATTAAT AAATCAGACT ATTTTTTGTC ACAGAGAATA AATGGAGAAT AAATAGTACA 7388 | |||||||| .......... .......TAT ATTTTTTG.. .......... .......... .......... 420 ACCTAACCCC CTAACAACAT CACCAGAGAG GTTAAACCAC GTAAACATTT ATATATCAGG 7448 .......... .......... .......... .......... .......... .......... 420 CTCCACAACC TAACAAACTA TTGGATCGGG TACCACATTC TGGTATGCTA ACTGTTTGAG 7508 .......... .......... .......... .......... .......... .......... 420 TTTGGGTTCC GCTTGAGGAC CAATGACTTG TTATAAATTT ATATTATTGA GCATGTGATA 7568 .......... .......... .......... .......... .......... .......... 420 ATCGATATTA TATATGTTCG GTACTTTGCA TGTTTACGAT GTTGTATTGA TTCGCGTAAT 7628 .......... .......... .......... .......... .......... .......... 420 CCTACCAGTA CACTGTGTTT ATATACTGAT ACTGCACTTG CTTTTATTTT TGTTGAGTAC 7688 .......... .......... .......... .......... .......... .......... 420 TGGGCATCTT CTGACGGCTA TTGACAGACC TCGCTTAGTA GATCGGTGAT CGTCGAATTC 7748 .......... .......... .......... .......... .......... .......... 420 AAGGGCGAGC CAATTGGCTG CCATGAGTTC TCTTTTGTCT ATGTCCACCA TTTTGGACTT 7808 .......... .......... .......... .......... .......... .......... 420 AGAATTTTTG AGTTAGATGT TAGTACGTTA GTTTGGGGTT GTATCCCTTT TTGTTTAGAC 7868 .......... .......... .......... .......... .......... .......... 420 TTGTTGAACT TTAATTAGAT GTTTAGGTAC ATTGACCAGG GGCTGCTCAA ACCCGTTGGT 7928 || | | ||| | || | .......... ........AT ATATTGGTGT CAAGGCCCG. .......... .......... 441 GGCCTAAGAC CAAAATCAAA CTAGAGGCCT TGAAAAAAAT TATAAATAAT TTTATTTTAA 7988 .......... .......... .......... .......... .......... .......... 441 ATCTATTTTT CTAGCCTTTT AAGATGCAAA GTTGTTAATA ATTTTTGTGT AGTTAATCTC 8048 .......... .......... .......... .......... .......... .......... 441 TTCTAATAAT TCTTTTTCAA TCGATAATAT AGCCAAACCA CTTAATATTT CTTGAGACAT 8108 .......... .......... .......... .......... .......... .......... 441 TGACGATTTT AAACACTATT TACAATATCA AATTAAAAAT ATAATAAACA TAAAACACAA 8168 .......... .......... .......... .......... .......... .......... 441 AATAAAAATA ATATTATAAA TTAGAATGAT ATTACCGTAT TCAAAAGTTA TGAAGACTTG 8228 .......... .......... .......... .......... .......... .......... 441 ATTTCCGAAA ATGAATGGAG CTGCTACAAT ATATTTTTTG TCCAAATTTA AAATATAAAC 8288 .......... .......... .......... .......... .......... .......... 441 TACCATTAAG AGCAAGTAAG TTCTTAAGTT TTGAATAAGA GACTAAGAGA ATATAATATT 8348 .......... .......... .......... .......... .......... .......... 441 AGAAAGGAGA ATGTGAGAAG AAATAGAGGA GAGGTGGATA AAATATAAAA AACAAAATTA 8408 .......... .......... .......... .......... .......... .......... 441 AAAAAAATAA GATAACGGGT ACATTAAAAA AAGTACACAA CTTTTTATTT TTTATTGAAA 8468 .......... .......... .......... .......... .......... .......... 441 AGTTGAAAAG TCAATCACTT CAGTCTTTTA ATCTTTCCAC TTAATTTTTT TTTATCCGTT 8528 .......... .......... .......... .......... .......... .......... 441 TTCATTAACT ATATGAGATT TTTTTTTTAA AATTTAGCCT AATTAAATAA AAAATGAGGC 8588 .......... .......... .......... .......... .......... .......... 441 CTCCTAAAAT TGGGGACCTG AGGCGAATGA CTTTTTTTAA AACTAACGAT CCGCCCCTGA 8648 .......... .......... .......... .......... .......... .......... 441 CATTGACTTT CAGGTTCTAG GCATTACTTT CGTAATTTTA ATTTTATAGT TAGACTTTTG 8708 .......... .......... .......... .......... .......... .......... 441 TTGGAGTTTA CGTGGACTCT ATTTCTTTTC TTAGTATTTA GCTTCCTCCC ATAATCTAAA 8768 .......... .......... .......... .......... .......... .......... 441 TGTCTTAGTT TTTGGATTAG TTGCTTGGTT TGAATTGTAG TAATGATTTT CCTATCATTG 8828 .......... .......... .......... .......... .......... .......... 441 GAGGGTTATT GCATGTGGGT GTCAATCATA ACGGTATGGA TTGTGACAAA ACCTTATTAA 8888 .......... .......... .......... .......... .......... .......... 441 TATTACTCTA TATTGTATGG ACAAAAATAC ATGACATGAA TTGCATAATA AGGAATACTA 8948 .......... .......... .......... .......... .......... .......... 441 TATATGACAA GGTAAATAAT CTTTTTGGAT CTTTATTTTT GAATTATTAG ATTTCAAA 9006 ||||||| .......... .......... .......... .......... .......... CTTTCAAA 449 hqPGS_C09HBa0047I13.1+_SGN-E213530- (2532 2870) ******************************************************************************** EST sequence 44 +strand 794 n (File: SGN-E352898+) 1 TTTGTTGAAC AAGCGGGTGT TCAGAATTAA GACAAAACAA GATAGATACA GAAGGTTCCA 61 AGATCATTTA GTGATTAAAG GATATTCACA AAGGAAAGGT GTTATTGAAA TATTTTCTCC 121 TTTTGTGAAG TTAACCTCTA TTCGAATTCT GTTGAGTATT GTTGCATCGG AGAATTTGCA 181 TCTAGAGCAA ATGGATGTAA AAACAACGTT TTTACATGGA GATCTGCACA AAGAGATATA 241 TATGAAACAA CCGGAAGGAT TTTTGGTTCC AAGCAAGGAT AACATGGTAT GAAACCTCAC 301 CAGGAACCTT GTATGGACTA AAGCAAGCAC CAAGGAAGTG GTACAAGAAG TTTGACTCCT 361 TCATGACCAA GAGTGGATTC TACAAAACTG AAAAGGATCC TTGTTGTTAC TTCAAGAAAT 421 ACACTGATTC ATATGTCGTT CTACTCTTGT ATGTGGATGA TATGTTAATT GCAGGATCTT 481 TTATGTGGGA GATTAAAAAT CTAAAGACAA CGTTGTCTGC AGCAATTGAA AGATTTGGGT 541 CCAGCGAAGC AGATTTTGGG GATGAAGATT TCCCGGCATA GATTTGCTGG CACTTTAAAT 601 CTATTTCAGG TGTTGTAAAT TGAGAAGGTG CTGAGCAGAT TCAGGGTTAA TGATTCTAAG 661 CCCAAGACTA CTCCATTAGA AAATCACTTT AAATTGTCAA AGGAGAAGCG CCCCAGAATG 721 GCAATGGAGT GTGATCATAT GGCACTTGTT TGATATGCTT TCAGCAGTGG GAGATTGATG 781 TATGCTATGG TCTG Predicted gene structure (within gDNA segment 6202 to 1992): Exon 1 4651 3862 ( 790 n); cDNA 1 794 ( 794 n); score: 0.842 MATCH C09HBa0047I13.1- SGN-E352898+ 0.842 790 0.995 C PGS_C09HBa0047I13.1-_SGN-E352898+ (4651 3862) Alignment (genomic DNA sequence = upper lines): TTTGTTGAAC AAGTGGGTGT TCAGAATCAA GACTTAACCA GATGGCAAAA GAAGGTTCAA 4592 |||||||||| ||| |||||| ||||||| || ||| ||| | ||| | | | |||||||| | TTTGTTGAAC AAGCGGGTGT TCAGAATTAA GACAAAACAA GATAGATACA GAAGGTTCCA 60 GGCTCATTTA GTGGTTAAAG GATA--AGCA ACTG--A--T TATGCTGAAA TATTTTCTCC 4538 | ||||||| ||| |||||| |||| || | | | | | ||||| |||||||||| AGATCATTTA GTGATTAAAG GATATTCACA AAGGAAAGGT GTTATTGAAA TATTTTCTCC 120 TGTTGTGAAG TTAACCTCTA TTCGAATTCT ATTGATTATT GTTGCATCGG AGAATATGCA 4478 | |||||||| |||||||||| |||||||||| |||| |||| |||||||||| ||||| |||| TTTTGTGAAG TTAACCTCTA TTCGAATTCT GTTGAGTATT GTTGCATCGG AGAATTTGCA 180 TCTAGAGCAA ATGGATGAAA AAACAGTGTT TTTACATGGA GATCTGGACA AAGAGATCTA 4418 |||||||||| ||||||| || ||||| ||| |||||||||| |||||| ||| ||||||| || TCTAGAGCAA ATGGATGTAA AAACAACGTT TTTACATGGA GATCTGCACA AAGAGATATA 240 TATGCAACAG CCGAAAGGAT TTGTGGTTCC AGGCAAGGAA CACATGGTGT GCAAGCTCAC 4358 |||| |||| ||| |||||| || ||||||| | ||||||| ||||||| | | || ||||| TATGAAACAA CCGGAAGGAT TTTTGGTTCC AAGCAAGGAT AACATGGTAT GAAACCTCAC 300 CAGG-AGCTT GTATGGACTA AAGCAAGCAC CAAGGCAGTG GTACAAGAAG TTTGACTCCT 4299 |||| | ||| |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| CAGGAACCTT GTATGGACTA AAGCAAGCAC CAAGGAAGTG GTACAAGAAG TTTGACTCCT 360 TCATGACCAA GAGTGAATTC TGCAAAGCTG AAAAGGATCC TTGTTGTTAC TTCAAGAAAT 4239 |||||||||| ||||| |||| | |||| ||| |||||||||| |||||||||| |||||||||| TCATGACCAA GAGTGGATTC TACAAAACTG AAAAGGATCC TTGTTGTTAC TTCAAGAAAT 420 ACACTAATTC ATATGTCTTT CTACTCTTGT ATCTGGATGA TATGTTGATT GAAGGATCTA 4179 ||||| |||| ||||||| || |||||||||| || ||||||| |||||| ||| | ||||||| ACACTGATTC ATATGTCGTT CTACTCTTGT ATGTGGATGA TATGTTAATT GCAGGATCTT 480 GTATGAGGGA GAACAACAAT CT--GGACAA GGTTGTCTGC AGCGTTTGAG ATGAAAGATT 4121 |||| |||| || || ||| || ||||| ||||||||| ||| | ||||||||| TTATGTGGGA GATTAAAAAT CTAAAGACAA CGTTGTCTGC AGC-----AA TTGAAAGATT 535 TGGGTCCAGC GAAGCAGATT TTGGGGATGA AGATTTCTCG GGATAGATCT GCTTGCACTT 4061 |||||||||| |||||||||| |||||||||| ||||||| || | |||||| | ||| |||||| TGGGTCCAGC GAAGCAGATT TTGGGGATGA AGATTTCCCG GCATAGATTT GCTGGCACTT 595 TAAATCTATC TCAGGAGTTG TACATTGAGA AGGTGCTGAG CAGATTCAGG GTTAATGATG 4001 ||||||||| ||||| |||| || ||||||| |||||||||| |||||||||| ||||||||| TAAATCTATT TCAGGTGTTG TAAATTGAGA AGGTGCTGAG CAGATTCAGG GTTAATGATT 655 CTAAACCCAG GACTACTCCA TTGGCAAATC ACTTTAAATT GTCAAAGGAG CAGTCACCCA 3941 |||| |||| |||||||||| || | ||||| |||||||||| |||||||||| || | ||| CTAAGCCCAA GACTACTCCA TTAGAAAATC ACTTTAAATT GTCAAAGGAG AAG-CGCCCC 714 AGACTGTCGA -GGAGCGTAA TCATATGGCA CTTGTTCCAT ATGCTTTAGC AATTTGTAGT 3882 ||| || | | |||| || | |||||||||| |||||| || ||||||| | | | || AGAATGGCAA TGGAGTGTGA TCATATGGCA CTTGTTTGAT ATGCTTTCAG CAGTGGGAGA 774 TTGGTGAGTG TTATGGTCTG 3862 ||| || || ||||||||| TTGATGTATG CTATGGTCTG 794 hqPGS_C09HBa0047I13.1-_SGN-E352898+ (4651 3862) ******************************************************************************** EST sequence 17 +strand 622 n (File: SGN-E306651+) 1 GTTGATCAAG TATGCAGGTG TGCTCACAAC ACCGCCCAAA ATGTTTTGGG CAGCCCATAG 61 TGTATCCTCA TACTCCTTGC ACGCTCATTC AATGTTCTGT TCATCCACTC AGCAATTCCA 121 TTCTGCCTTG CCTTACAAGG AACTGTTCTC ATCAATTTGA TTCCCTCAGC TGCACAAGAT 181 GCCTTGAACT CTGATTTGTC ATCCTCTCCT CCATTGTAAG ACCTTAGGCA TTTGACTTTC 241 AAACCGGTTT GATTCTCAAC TTCAGCTTTC CACTTCTTGA AAGTTGCAAA CACATCTGAC 301 TTATGCTTCA AGAAGTAAAC TCATACCTTC CTGCTGAAAT CATCAATGAA GGTATTATAG 361 AATCTGCTTT GACATATCTG GGGGTTACTC TTCTCCAACT CAACCTCAAC TCTCACTTGC 421 TTGGTAATCT CTAGAAACTT CTGCTCTCTG TCCTTGTACA GGACAGACTC ATCAAATATC 481 ACATCACAAT GTCTCAGGAT CTTTCTGTTC TTGTCATCCC AAAACCTGTA ACCAAACAAA 541 TCAGAACCAT AGCCTATGAA GTAACACTTC ACAGCCTTGG CATCAAGCTT GTCTCTCTTT 601 TCTAGATCAA CATGAACATA AG Predicted gene structure (within gDNA segment 526 to 6353): Exon 1 5274 5640 ( 367 n); cDNA 1 366 ( 366 n); score: 0.916 MATCH C09HBa0047I13.1+ SGN-E306651+ 0.916 367 0.590 C PGS_C09HBa0047I13.1+_SGN-E306651+ (5274 5640) Alignment (genomic DNA sequence = upper lines): GTTGATCAAG TATGCAACTG TGCTCACAAC ATTCGCCCAA AATGTTTTGG GCATCCCACA 5333 |||||||||| |||||| || |||||||||| | ||||||| |||||||||| ||| |||| | GTTGATCAAG TATGCAGGTG TGCTCACAAC A-CCGCCCAA AATGTTTTGG GCAGCCCATA 59 GTTTATCCTC ATACTCCTTG CATGCTCATT CAATATTTTG TTCATCCTCT CATCAATTCC 5393 || ||||||| |||||||||| || ||||||| |||| || || ||||||| || || ||||||| GTGTATCCTC ATACTCCTTG CACGCTCATT CAATGTTCTG TTCATCCACT CAGCAATTCC 119 ATTCTGCCTT GCCTTACCAG GAACTGCTCT CATCAATCTG ATTCCCTTAG CTGCACAAAA 5453 |||||||||| ||||||| || |||||| ||| ||||||| || ||||||| || |||||||| | ATTCTGCCTT GCCTTACAAG GAACTGTTCT CATCAATTTG ATTCCCTCAG CTGCACAAGA 179 TGCCGTGAAC TATGATTTGT CATACTCTCC TCCATTGTCA GACCTTAGGC GTTTGACTTT 5513 |||| ||||| | |||||||| ||| |||||| |||||||| | |||||||||| ||||||||| TGCCTTGAAC TCTGATTTGT CATCCTCTCC TCCATTGTAA GACCTTAGGC ATTTGACTTT 239 CAAGCTGCTC TGATTCTCAA CTTCAGCTTT CCACTTCTTG AAAGTTGCAA ACACATCTGA 5573 ||| | | | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAACCGGTT TGATTCTCAA CTTCAGCTTT CCACTTCTTG AAAGTTGCAA ACACATCTGA 299 ATTATGCTTC AAGAAGTAAA CCCATACCTT CCTGCTGAAA TCATAAATGA AGGTAACATA 5633 ||||||||| |||||||||| | |||||||| |||||||||| |||| ||||| ||||| ||| CTTATGCTTC AAGAAGTAAA CTCATACCTT CCTGCTGAAA TCATCAATGA AGGTATTATA 359 GAATCTG 5640 ||||||| GAATCTG 366 hqPGS_C09HBa0047I13.1+_SGN-E306651+ (5274 5640) ******************************************************************************** EST sequence 36 +strand 632 n (File: SGN-E548332+) 1 TAATTTTTGA GTTGCCGCGA CGTTTCGCCC TATTTTTACA GAGTAGGGAT GTAAACAGTT 61 ACCACGAAAT ATTGAGTTTT CTCTTTCTCT TGAAAGTTCT TGTGTTCTTT ATTCATCTAG 121 TGTGTGTGCG TGAATTCGAT CCTAACAAAT GGTATCAGAG CTAAGGAGAT TCAACACGAT 181 CACAGAAGAT GGATAGTTCG AAGCTTGGAA TCGAGAAGTT TGATGGATTC AATTTCAGTT 241 TCTGGAAGAT GCAGATCGAA GATTATCTGT ACCAGAAAGA TTTTCACGAG CCGTTGACCG 301 GGGTGAAGAC GAAATCCATG ACTGAGGAGA AGTGGAAACT CAAGGATCGC CAGGCTCTAG 361 GGTTGATCCG GTTCACTTTG TCAAGAAACA TGGCGTTCAA CATCGTGAAG AAGAAGACTA 421 CATCCGGTCT GTTGAAGGCA CTATCAAATA TGTATGAAAA ACCATCGGCT ATGAACAAAG 481 TATATTTGAT GCGTAGATTG TTCAATTTAC AGATGTTTGA AACTGGATAC GTTTCTGATC 541 ATATAAACTA GTTCAATATG ATTGTGAGTC AACTCAATTC TGTGGATATT AATTTCGAAG 601 ATGAAATTAA GGCGTTGATT TTTATGTCAA AA Predicted gene structure (within gDNA segment 9231 to 5960): Exon 1 7193 6663 ( 531 n); cDNA 98 629 ( 532 n); score: 0.916 MATCH C09HBa0047I13.1- SGN-E548332+ 0.916 531 0.840 C PGS_C09HBa0047I13.1-_SGN-E548332+ (7193 6663) Alignment (genomic DNA sequence = upper lines): TCTTGTGTTC TTAATTCATC AAATGTGTGT GTGTGCATTC GATCCAAACA ACTGGTATCA 7134 |||||||||| || ||||||| | ||||||| | ||| |||| ||||| |||| | |||||||| TCTTGTGTTC TTTATTCATC TAGTGTGTGT GCGTGAATTC GATCCTAACA AATGGTATCA 157 GAGCTAAGGA GATTCAACAA GATCACTGAA GATGGATAGT TCGAAGCTTG AAATCGAGAA 7074 |||||||||| ||||||||| |||||| ||| |||||||||| |||||||||| ||||||||| GAGCTAAGGA GATTCAACAC GATCACAGAA GATGGATAGT TCGAAGCTTG GAATCGAGAA 217 GTTTGATGGA TCCGATTTCA GAATCTGGAA GATGCAGATC GAAGATTATC TGTACCAGAA 7014 |||||||||| | | |||||| | ||||||| |||||||||| |||||||||| |||||||||| GTTTGATGGA TTCAATTTCA GTTTCTGGAA GATGCAGATC GAAGATTATC TGTACCAGAA 277 AGATCTTCAC GAATCGTTGA CCGGGGTGAA ACCAAAATCC ATGACGGAGG AGAAGTGGAA 6954 |||| ||||| || |||||| |||||||||| | |||||| ||||| |||| |||||||||| AGATTTTCAC GAGCCGTTGA CCGGGGTGAA GACGAAATCC ATGACTGAGG AGAAGTGGAA 337 ACTCAAGGAT CGCTAGGCTC TAGGGTTGAT TCGGTTGACT TTGTCAAGAA ACGTGGCGTT 6894 |||||||||| ||| |||||| |||||||||| ||||| ||| |||||||||| || ||||||| ACTCAAGGAT CGCCAGGCTC TAGGGTTGAT CCGGTTCACT TTGTCAAGAA ACATGGCGTT 397 ACACATCGTG AAGGAGAAGA CTACGTCCGG TCTGTTGAAG GCACTGTCAA ACATGTATGA 6834 |||||||| ||| |||||| |||| ||||| |||||||||| ||||| |||| | |||||||| CAACATCGTG AAGAAGAAGA CTACATCCGG TCTGTTGAAG GCACTATCAA ATATGTATGA 457 AAAACTATCG GCAATGAACA AGGTATATTT GATGCGTAGA -TGTTCAATT TACAAATGTC 6775 ||||| |||| || ||||||| | |||||||| |||||||||| ||||||||| |||| |||| AAAACCATCG GCTATGAACA AAGTATATTT GATGCGTAGA TTGTTCAATT TACAGATGTT 517 TGAGAATGGA TCCGTTTCTG ATCATATAAA CGAGTTCAAT ATTATTGTGA GTCAACTCAA 6715 ||| | |||| | |||||||| |||||||||| | |||||||| || ||||||| |||||||||| TGAAACTGGA TACGTTTCTG ATCATATAAA CTAGTTCAAT ATGATTGTGA GTCAACTCAA 577 TTCTGTGGAT ATTAATTTCG AAGATGAAAT TAAGGCGTTG ATTTTGATGT CA 6663 |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| || TTCTGTGGAT ATTAATTTCG AAGATGAAAT TAAGGCGTTG ATTTTTATGT CA 629 hqPGS_C09HBa0047I13.1-_SGN-E548332+ (7193 6663) ******************************************************************************** EST sequence 12 -strand 637 n (File: SGN-E540107-) 1 TAATTTTTGA GTTGCCGCGA CGTTTCGCCC TATTTTTACA GAGTAGGGAT GTAAACAGTT 61 ACCACGAAAT ATTGAGTTTT CTCTTTCTCT TGAAAGTTCT TGTGTTCTTT ATTCATCTAG 121 TGTGTGTGCG TGAATTCGAT CCTAACAAAT GGTATCAGAG CTAAGGAGAT TCAACACGAT 181 CACAGAAGAT GGATAGTTCG AAGCTTGGAA TCGAGAAGTT TGATGGATTC AATTTCAGTT 241 TCTGGAAGAT GCAGATCGAA GATTATCTGT ACCAGAAAGA TTTTCACGAG CCGTTGACCG 301 GGGTGAAGAC GAAATCCATG ACTGAGGAGA AGTGGAAACT CAAGGATCGC CAGGCTCTAG 361 GGTTGATCCG GTTCACTTTG TCAAGAAACA TGGCGTTCAA CATCGTGAAG AAGAAGACTA 421 CGTCCGGTCT GTTGAAGGCA CTATCAAATA TGTATGAAAA ACCATCGGCT ATGAACAAAG 481 TATATTTGAT GCGTAGATTG TTCAATTTAC AGATGTTTGA AACTGGATAC GTTTCTGATC 541 ATATAAACGA GTTCAATATG ATTGTGAGTC AACTCAATTC TGTGGATATT AATTTCGAAG 601 ATGAAATTAA GGCGTTGATT TGATGTCAAA AAAAAAA Predicted gene structure (within gDNA segment 9841 to 5911): Exon 1 7193 6664 ( 530 n); cDNA 98 627 ( 530 n); score: 0.920 PPA cDNA 628 637 MATCH C09HBa0047I13.1- SGN-E540107- 0.920 530 0.832 C PGS_C09HBa0047I13.1-_SGN-E540107- (7193 6664) Alignment (genomic DNA sequence = upper lines): TCTTGTGTTC TTAATTCATC AAATGTGTGT GTGTGCATTC GATCCAAACA ACTGGTATCA 7134 |||||||||| || ||||||| | ||||||| | ||| |||| ||||| |||| | |||||||| TCTTGTGTTC TTTATTCATC TAGTGTGTGT GCGTGAATTC GATCCTAACA AATGGTATCA 157 GAGCTAAGGA GATTCAACAA GATCACTGAA GATGGATAGT TCGAAGCTTG AAATCGAGAA 7074 |||||||||| ||||||||| |||||| ||| |||||||||| |||||||||| ||||||||| GAGCTAAGGA GATTCAACAC GATCACAGAA GATGGATAGT TCGAAGCTTG GAATCGAGAA 217 GTTTGATGGA TCCGATTTCA GAATCTGGAA GATGCAGATC GAAGATTATC TGTACCAGAA 7014 |||||||||| | | |||||| | ||||||| |||||||||| |||||||||| |||||||||| GTTTGATGGA TTCAATTTCA GTTTCTGGAA GATGCAGATC GAAGATTATC TGTACCAGAA 277 AGATCTTCAC GAATCGTTGA CCGGGGTGAA ACCAAAATCC ATGACGGAGG AGAAGTGGAA 6954 |||| ||||| || |||||| |||||||||| | |||||| ||||| |||| |||||||||| AGATTTTCAC GAGCCGTTGA CCGGGGTGAA GACGAAATCC ATGACTGAGG AGAAGTGGAA 337 ACTCAAGGAT CGCTAGGCTC TAGGGTTGAT TCGGTTGACT TTGTCAAGAA ACGTGGCGTT 6894 |||||||||| ||| |||||| |||||||||| ||||| ||| |||||||||| || ||||||| ACTCAAGGAT CGCCAGGCTC TAGGGTTGAT CCGGTTCACT TTGTCAAGAA ACATGGCGTT 397 ACACATCGTG AAGGAGAAGA CTACGTCCGG TCTGTTGAAG GCACTGTCAA ACATGTATGA 6834 |||||||| ||| |||||| |||||||||| |||||||||| ||||| |||| | |||||||| CAACATCGTG AAGAAGAAGA CTACGTCCGG TCTGTTGAAG GCACTATCAA ATATGTATGA 457 AAAACTATCG GCAATGAACA AGGTATATTT GATGCGTAGA -TGTTCAATT TACAAATGTC 6775 ||||| |||| || ||||||| | |||||||| |||||||||| ||||||||| |||| |||| AAAACCATCG GCTATGAACA AAGTATATTT GATGCGTAGA TTGTTCAATT TACAGATGTT 517 TGAGAATGGA TCCGTTTCTG ATCATATAAA CGAGTTCAAT ATTATTGTGA GTCAACTCAA 6715 ||| | |||| | |||||||| |||||||||| |||||||||| || ||||||| |||||||||| TGAAACTGGA TACGTTTCTG ATCATATAAA CGAGTTCAAT ATGATTGTGA GTCAACTCAA 577 TTCTGTGGAT ATTAATTTCG AAGATGAAAT TAAGGCGTTG ATTTTGATGT C 6664 |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| | TTCTGTGGAT ATTAATTTCG AAGATGAAAT TAAGGCGTTG A-TTTGATGT C 627 hqPGS_C09HBa0047I13.1-_SGN-E540107- (7193 6664) ******************************************************************************** EST sequence 35 +strand 638 n (File: SGN-E540110+) 1 TAATTTTTGA GTTGCCGCGA CGTTTCGCCC TATTTTTACA GAGTAGGGAT GTAAACAGTT 61 ACCACGAAAT ATTGAGTTTT CTCTTTCTCT TGAAAGTTCT TGTGTTCTTT ATTCATCTAG 121 TGTGTGTGCG TGAATTCGAT CCTAACAAAT GGTATCAGAG CTAAGGAGAT TCAACACGAT 181 CACAGAAGAT GGATAGTTCG AAGCTTGGAA TCGAGAAGTT TGATGGATTC AATTTCAGTT 241 TCTGGAAGAT GCAGATCGAA GATTATCTGT ACCAGAAAGA TTTTCACGAG CCGTTGACCG 301 GGGTGAAGAC GAAATCCATG ACTGAGGAGA AGTGGAAACT CAAGGATCGC CAGGCTCTAG 361 GGTTGATCCG GTTCACTTTG TCAAGAAACA TGGCGTTCAA CATCGTGAAG AAGAAGACTA 421 CGTCCGGTCT GTTGAAGGCA CTATCAAATA TGTATGAAAA ACCATCGGCT ATGAACAAAG 481 TATATTTGAT GCGTAGATTG TTCAATTTAC AGATGTTTGA AACTGGATAC GTTTCTGATC 541 ATATAAACGA GTTCAATATG ATTGTGAGTC AACTCAATTC TGTGGATATT AATTTCGAAG 601 ATGAAATTAA GGCGTTGATT TTGATGTCAA AAAAAAAA Predicted gene structure (within gDNA segment 9231 to 5963): Exon 1 7193 6664 ( 530 n); cDNA 98 628 ( 531 n); score: 0.922 PPA cDNA 629 638 MATCH C09HBa0047I13.1- SGN-E540110+ 0.922 530 0.831 C PGS_C09HBa0047I13.1-_SGN-E540110+ (7193 6664) Alignment (genomic DNA sequence = upper lines): TCTTGTGTTC TTAATTCATC AAATGTGTGT GTGTGCATTC GATCCAAACA ACTGGTATCA 7134 |||||||||| || ||||||| | ||||||| | ||| |||| ||||| |||| | |||||||| TCTTGTGTTC TTTATTCATC TAGTGTGTGT GCGTGAATTC GATCCTAACA AATGGTATCA 157 GAGCTAAGGA GATTCAACAA GATCACTGAA GATGGATAGT TCGAAGCTTG AAATCGAGAA 7074 |||||||||| ||||||||| |||||| ||| |||||||||| |||||||||| ||||||||| GAGCTAAGGA GATTCAACAC GATCACAGAA GATGGATAGT TCGAAGCTTG GAATCGAGAA 217 GTTTGATGGA TCCGATTTCA GAATCTGGAA GATGCAGATC GAAGATTATC TGTACCAGAA 7014 |||||||||| | | |||||| | ||||||| |||||||||| |||||||||| |||||||||| GTTTGATGGA TTCAATTTCA GTTTCTGGAA GATGCAGATC GAAGATTATC TGTACCAGAA 277 AGATCTTCAC GAATCGTTGA CCGGGGTGAA ACCAAAATCC ATGACGGAGG AGAAGTGGAA 6954 |||| ||||| || |||||| |||||||||| | |||||| ||||| |||| |||||||||| AGATTTTCAC GAGCCGTTGA CCGGGGTGAA GACGAAATCC ATGACTGAGG AGAAGTGGAA 337 ACTCAAGGAT CGCTAGGCTC TAGGGTTGAT TCGGTTGACT TTGTCAAGAA ACGTGGCGTT 6894 |||||||||| ||| |||||| |||||||||| ||||| ||| |||||||||| || ||||||| ACTCAAGGAT CGCCAGGCTC TAGGGTTGAT CCGGTTCACT TTGTCAAGAA ACATGGCGTT 397 ACACATCGTG AAGGAGAAGA CTACGTCCGG TCTGTTGAAG GCACTGTCAA ACATGTATGA 6834 |||||||| ||| |||||| |||||||||| |||||||||| ||||| |||| | |||||||| CAACATCGTG AAGAAGAAGA CTACGTCCGG TCTGTTGAAG GCACTATCAA ATATGTATGA 457 AAAACTATCG GCAATGAACA AGGTATATTT GATGCGTAGA -TGTTCAATT TACAAATGTC 6775 ||||| |||| || ||||||| | |||||||| |||||||||| ||||||||| |||| |||| AAAACCATCG GCTATGAACA AAGTATATTT GATGCGTAGA TTGTTCAATT TACAGATGTT 517 TGAGAATGGA TCCGTTTCTG ATCATATAAA CGAGTTCAAT ATTATTGTGA GTCAACTCAA 6715 ||| | |||| | |||||||| |||||||||| |||||||||| || ||||||| |||||||||| TGAAACTGGA TACGTTTCTG ATCATATAAA CGAGTTCAAT ATGATTGTGA GTCAACTCAA 577 TTCTGTGGAT ATTAATTTCG AAGATGAAAT TAAGGCGTTG ATTTTGATGT C 6664 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | TTCTGTGGAT ATTAATTTCG AAGATGAAAT TAAGGCGTTG ATTTTGATGT C 628 hqPGS_C09HBa0047I13.1-_SGN-E540110+ (7193 6664) ******************************************************************************** EST sequence 13 -strand 636 n (File: SGN-E540114-) 1 TAATTTTTGA GTTGCCGCGA CGTTTCCCCC TATTTTTACA GAGTAGGGAT GTAAACAGTT 61 ACCACGAAAT ATTGAGTTTT CTCTTTCTCT TGAAAGTTCT TGTGTTCTTT ATTCATCTAG 121 TGTGTGTGCG TGAATTCGAT CCTAACAAAT GGTATCAGAG CTAAGGAGAT TCAACACGAT 181 CACAGAAGAT GGATAGTTCG AAGCTTGGAA TCGAGAAGTT TGATGGATTC AATTTCAGTT 241 TCTGGAAGAT GCAGATCGAA GATTATCTGT ACCAGAAAGA TTTTCACGAG CCGTTGACCG 301 GGGTGAAGAC GAAATCCATG ACTGAGGAGA AGTGGAAACT CAAGGATCGC CAGGCTCTAG 361 GGTTGATCCG GTTCACTTTG TCAAGAAACA TGGCGTTCAA CATCGTGAAG AAGAAGACTA 421 CGTCCGGTCT GTTGAAGGCA CTATCAAATA TGTATGAAAA ACCATCGGCT ATGAACAAAG 481 TATATTTGAT GCGTAGATTG TTCAATTTAC AGATGTTTGA AACTGGATAC GTTTCTGATC 541 ATATAAACGA GTTCAATATG ATTGTGAGTC AACTCAATTC TGTGGATATT AATTTCGAAG 601 ATGAAAATAA GGCGTTGATT TTGCCTCTTT TAAGAA Predicted gene structure (within gDNA segment 9841 to 5939): Exon 1 7193 6669 ( 525 n); cDNA 98 623 ( 526 n); score: 0.919 MATCH C09HBa0047I13.1- SGN-E540114- 0.919 525 0.825 C PGS_C09HBa0047I13.1-_SGN-E540114- (7193 6669) Alignment (genomic DNA sequence = upper lines): TCTTGTGTTC TTAATTCATC AAATGTGTGT GTGTGCATTC GATCCAAACA ACTGGTATCA 7134 |||||||||| || ||||||| | ||||||| | ||| |||| ||||| |||| | |||||||| TCTTGTGTTC TTTATTCATC TAGTGTGTGT GCGTGAATTC GATCCTAACA AATGGTATCA 157 GAGCTAAGGA GATTCAACAA GATCACTGAA GATGGATAGT TCGAAGCTTG AAATCGAGAA 7074 |||||||||| ||||||||| |||||| ||| |||||||||| |||||||||| ||||||||| GAGCTAAGGA GATTCAACAC GATCACAGAA GATGGATAGT TCGAAGCTTG GAATCGAGAA 217 GTTTGATGGA TCCGATTTCA GAATCTGGAA GATGCAGATC GAAGATTATC TGTACCAGAA 7014 |||||||||| | | |||||| | ||||||| |||||||||| |||||||||| |||||||||| GTTTGATGGA TTCAATTTCA GTTTCTGGAA GATGCAGATC GAAGATTATC TGTACCAGAA 277 AGATCTTCAC GAATCGTTGA CCGGGGTGAA ACCAAAATCC ATGACGGAGG AGAAGTGGAA 6954 |||| ||||| || |||||| |||||||||| | |||||| ||||| |||| |||||||||| AGATTTTCAC GAGCCGTTGA CCGGGGTGAA GACGAAATCC ATGACTGAGG AGAAGTGGAA 337 ACTCAAGGAT CGCTAGGCTC TAGGGTTGAT TCGGTTGACT TTGTCAAGAA ACGTGGCGTT 6894 |||||||||| ||| |||||| |||||||||| ||||| ||| |||||||||| || ||||||| ACTCAAGGAT CGCCAGGCTC TAGGGTTGAT CCGGTTCACT TTGTCAAGAA ACATGGCGTT 397 ACACATCGTG AAGGAGAAGA CTACGTCCGG TCTGTTGAAG GCACTGTCAA ACATGTATGA 6834 |||||||| ||| |||||| |||||||||| |||||||||| ||||| |||| | |||||||| CAACATCGTG AAGAAGAAGA CTACGTCCGG TCTGTTGAAG GCACTATCAA ATATGTATGA 457 AAAACTATCG GCAATGAACA AGGTATATTT GATGCGTAGA -TGTTCAATT TACAAATGTC 6775 ||||| |||| || ||||||| | |||||||| |||||||||| ||||||||| |||| |||| AAAACCATCG GCTATGAACA AAGTATATTT GATGCGTAGA TTGTTCAATT TACAGATGTT 517 TGAGAATGGA TCCGTTTCTG ATCATATAAA CGAGTTCAAT ATTATTGTGA GTCAACTCAA 6715 ||| | |||| | |||||||| |||||||||| |||||||||| || ||||||| |||||||||| TGAAACTGGA TACGTTTCTG ATCATATAAA CGAGTTCAAT ATGATTGTGA GTCAACTCAA 577 TTCTGTGGAT ATTAATTTCG AAGATGAAAT TAAGGCGTTG ATTTTG 6669 |||||||||| |||||||||| ||||||||| |||||||||| |||||| TTCTGTGGAT ATTAATTTCG AAGATGAAAA TAAGGCGTTG ATTTTG 623 hqPGS_C09HBa0047I13.1-_SGN-E540114- (7193 6669) ******************************************************************************** EST sequence 38 +strand 574 n (File: SGN-E286267+) 1 AATTTTTGAG TTGCCGCGAC GTTTCGCCCT ATTTTTACAG AGTAGGGATG TAAACAGTTA 61 CCACGAAATA TTGAGTTTTC TCTTTCTCTT GAAAGTTCTT GTGTTCTTTA TTCATCTAGT 121 GTGTGTGCGT GAATTCGATC CTAACAAATG GTATCAGAGC TAAGGAGATT CAACACGATC 181 ACAGAAGATG GATAGTTCGA AGCTTGGAAT CGAGAAGTTT GATGGATTCA ATTTCAGTTT 241 CTGGAAGATG CAGATCGAAG ATTATCTGTA CCAGAAAGAT TTTCACGAGC CGTTGACCGG 301 GGTGAAGACG AAATCCATGA CTGAGGAGAA GTGGAAACTC AAGGATCGCC AGGCTCTAGG 361 GTTGATCCGG TTCACTTTGT CAAGAAACAT GGCGTTCAAC ATCGTGAAGA AGAAGACTAC 421 GTCCGGTCTG TTGAAGGCAC TATCAAATAT GTATGAAAAA CCATCGGCTA TGAACAAAGT 481 ATATTTGATG CGTAGATTGT TCAATTTACA GATGTTTGAA ACTGGATACG TTTCTGATCA 541 TATAAACGAG TTCAATATGA TTTGGAGTCA ACTC Predicted gene structure (within gDNA segment 9221 to 5963): Exon 1 7193 6717 ( 477 n); cDNA 97 574 ( 478 n); score: 0.909 MATCH C09HBa0047I13.1- SGN-E286267+ 0.909 477 0.831 C PGS_C09HBa0047I13.1-_SGN-E286267+ (7193 6717) Alignment (genomic DNA sequence = upper lines): TCTTGTGTTC TTAATTCATC AAATGTGTGT GTGTGCATTC GATCCAAACA ACTGGTATCA 7134 |||||||||| || ||||||| | ||||||| | ||| |||| ||||| |||| | |||||||| TCTTGTGTTC TTTATTCATC TAGTGTGTGT GCGTGAATTC GATCCTAACA AATGGTATCA 156 GAGCTAAGGA GATTCAACAA GATCACTGAA GATGGATAGT TCGAAGCTTG AAATCGAGAA 7074 |||||||||| ||||||||| |||||| ||| |||||||||| |||||||||| ||||||||| GAGCTAAGGA GATTCAACAC GATCACAGAA GATGGATAGT TCGAAGCTTG GAATCGAGAA 216 GTTTGATGGA TCCGATTTCA GAATCTGGAA GATGCAGATC GAAGATTATC TGTACCAGAA 7014 |||||||||| | | |||||| | ||||||| |||||||||| |||||||||| |||||||||| GTTTGATGGA TTCAATTTCA GTTTCTGGAA GATGCAGATC GAAGATTATC TGTACCAGAA 276 AGATCTTCAC GAATCGTTGA CCGGGGTGAA ACCAAAATCC ATGACGGAGG AGAAGTGGAA 6954 |||| ||||| || |||||| |||||||||| | |||||| ||||| |||| |||||||||| AGATTTTCAC GAGCCGTTGA CCGGGGTGAA GACGAAATCC ATGACTGAGG AGAAGTGGAA 336 ACTCAAGGAT CGCTAGGCTC TAGGGTTGAT TCGGTTGACT TTGTCAAGAA ACGTGGCGTT 6894 |||||||||| ||| |||||| |||||||||| ||||| ||| |||||||||| || ||||||| ACTCAAGGAT CGCCAGGCTC TAGGGTTGAT CCGGTTCACT TTGTCAAGAA ACATGGCGTT 396 ACACATCGTG AAGGAGAAGA CTACGTCCGG TCTGTTGAAG GCACTGTCAA ACATGTATGA 6834 |||||||| ||| |||||| |||||||||| |||||||||| ||||| |||| | |||||||| CAACATCGTG AAGAAGAAGA CTACGTCCGG TCTGTTGAAG GCACTATCAA ATATGTATGA 456 AAAACTATCG GCAATGAACA AGGTATATTT GATGCGTAGA -TGTTCAATT TACAAATGTC 6775 ||||| |||| || ||||||| | |||||||| |||||||||| ||||||||| |||| |||| AAAACCATCG GCTATGAACA AAGTATATTT GATGCGTAGA TTGTTCAATT TACAGATGTT 516 TGAGAATGGA TCCGTTTCTG ATCATATAAA CGAGTTCAAT ATTATTGTGA GTCAACTC 6717 ||| | |||| | |||||||| |||||||||| |||||||||| || ||| || |||||||| TGAAACTGGA TACGTTTCTG ATCATATAAA CGAGTTCAAT ATGATTTGGA GTCAACTC 574 hqPGS_C09HBa0047I13.1-_SGN-E286267+ (7193 6717) ******************************************************************************** EST sequence 22 -strand 255 n (File: SGN-E257955-) 1 GAAGTGGAAA CTCAAGGATC GCCAGGCTCT AGGGTTGATC CGGTTCACTT TGTCAAGAAA 61 CATGGCGTTC AACATCGTGA AGAAGAAGAC TACGTCCGGT CTGTTGAAGG CACTATCAAA 121 TATGTATGAA AAACCATCGG CTATGAACAA AGTATATTTG ATGCGTAGAT TGTTCAATTT 181 ACAGATGTTT GAAACTGGAT ACGTTTCTGA TCAAAAAAAA AAAAAAAAAA AAAAAAAAAA 241 AACGCGAGAC TAGTT Predicted gene structure (within gDNA segment 7572 to 4839): Exon 1 6962 6752 ( 211 n); cDNA 1 212 ( 212 n); score: 0.908 PPA cDNA 213 243 MATCH C09HBa0047I13.1- SGN-E257955- 0.908 211 0.827 C PGS_C09HBa0047I13.1-_SGN-E257955- (6962 6752) Alignment (genomic DNA sequence = upper lines): GAAGTGGAAA CTCAAGGATC GCTAGGCTCT AGGGTTGATT CGGTTGACTT TGTCAAGAAA 6903 |||||||||| |||||||||| || ||||||| ||||||||| ||||| |||| |||||||||| GAAGTGGAAA CTCAAGGATC GCCAGGCTCT AGGGTTGATC CGGTTCACTT TGTCAAGAAA 60 CGTGGCGTTA CACATCGTGA AGGAGAAGAC TACGTCCGGT CTGTTGAAGG CACTGTCAAA 6843 | ||||||| ||||||||| || ||||||| |||||||||| |||||||||| |||| ||||| CATGGCGTTC AACATCGTGA AGAAGAAGAC TACGTCCGGT CTGTTGAAGG CACTATCAAA 120 CATGTATGAA AAACTATCGG CAATGAACAA GGTATATTTG ATGCGTAGA- TGTTCAATTT 6784 ||||||||| |||| ||||| | |||||||| ||||||||| ||||||||| |||||||||| TATGTATGAA AAACCATCGG CTATGAACAA AGTATATTTG ATGCGTAGAT TGTTCAATTT 180 ACAAATGTCT GAGAATGGAT CCGTTTCTGA TC 6752 ||| |||| | || | ||||| ||||||||| || ACAGATGTTT GAAACTGGAT ACGTTTCTGA TC 212 hqPGS_C09HBa0047I13.1-_SGN-E257955- (6962 6752) ******************************************************************************** EST sequence 2 +strand 498 n (File: SGN-E314672+) 1 TCAACCGGCC GTGGAAGCTT TTACTCGAGG GGGTGCTCTT GGCCCAGTGA ATATCGCTTA 61 TTCTGGTGTT TATCAGTGGT GGTATACAAT CGGTTTACGC ACTAATGAAG ATCTTTATAC 121 TGGCGCTCTT TTTCTATTAT TTCTTTCTGC CATATCCTTA ATAGCAGGTT GGTTACACCT 181 ACAACCGAAA TGGAAACCGA GCGTTTCCTG GTTCAAAAAT GCCGAATCTC GTCTGAATCA 241 CCATTTGTCA GGACTCTTTG GCGTAAGTTC CTTGGCTTGG ACAGGGCATT TAGTCCATGT 301 TGCTATTCCT GCATCCAGAG GGGAGTACGT TCGGTGGAAT AATTTCTTAG ATGTATTACC 361 GCATCCCCAA GGGTTACGCC CACTTTTTAC AGGTCAATGG AATCTTTATG CTCAAAACCC 421 CGATTCCACC CACAAACGCA AAAGTTTATG GGTGACTGAT ATTGCCCATC ACCATTTAGC 481 TATTGCATTT ATTTTTCT Predicted gene structure (within gDNA segment 10405 to 15886): Exon 1 14835 14873 ( 39 n); cDNA 384 422 ( 39 n); score: 1.000 Intron 1 14874 14940 ( 67 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.85) Exon 2 14941 15015 ( 75 n); cDNA 423 498 ( 76 n); score: 0.887 MATCH C09HBa0047I13.1+ SGN-E314672+ 0.887 114 0.229 C PGS_C09HBa0047I13.1+_SGN-E314672+ (14835 14873,14941 15015) Alignment (genomic DNA sequence = upper lines): TTTTTACAGG TCAATGGAAT CTTTATGCTC AAAACCCCGA TTCAAGTAGT CATTTATTTG 14894 |||||||||| |||||||||| |||||||||| ||||||||| TTTTTACAGG TCAATGGAAT CTTTATGCTC AAAACCCCG. .......... .......... 422 GTACCGCCGA AGGGGCGGGA ACGACCATTC TAACTCTTCT CGGGGGATTC CACCCACAAA 14954 |||| |||||||||| .......... .......... .......... .......... ......ATTC CACCCACAAA 436 CAC-AAAGTT TACGGCTGAC TGATATTGCC CATTATCATT TAGCTATTGT ATTTATTTTT 15013 | | |||||| || || |||| |||||||||| ||| | |||| ||||||||| |||||||||| CGCAAAAGTT TATGGGTGAC TGATATTGCC CATCACCATT TAGCTATTGC ATTTATTTTT 496 CT 15015 || CT 498 hqPGS_C09HBa0047I13.1+_SGN-E314672+ (14835 14873,14941 15015) ******************************************************************************** EST sequence 24 +strand 576 n (File: SGN-E331220+) 1 GCGCTCTTTT TCTATTATTT CTTTCTGCCA TATCCTTAAT AGCAGGTTGG TTACACCTAC 61 AACCGAAATG GAAACCGAGC GTTTCCTGGT TCAAAAATGC CGAATCTCGT CTGAATCACC 121 ATTTGTCAGG ACTCTTTGGC GTAAGTTCCT TGGCTTGGAC AGGGCATTTA GTCCATGTTG 181 CTATTCCTGC ATCCAGAGGG GAGTACGTTC GGTGGAATAA TTTCTTAGAT GTATTACCGC 241 ATCCCCAAGG GTTAGGCCCA CTTTTTACAG GTCAATGGAA TCTTTATGCT CAAAACCCCG 301 ATTCAAGTAG TCATTTATTT GGTACCGCCG AAGGGGCGGG AACGGCCATT CTAACTCTTC 361 TCGGGGGATT CCACCCACAA ACGCAAAGTT TATGGCTGAC TGATATTGCC CATCACCATT 421 TAGCTATTGC ATTTATTTTT CTTGTTGCTG GTCATATGTA TAGAACCAAT TTCGGGATTG 481 GGCACAGTAT GAAAGATCTT TTAGATGCAC ATATTCCTCC GGGGGGACGA TTGGGGCGTG 541 GACATAAGGG TCTTTATGAC ACAATCAACA ATTCGC Predicted gene structure (within gDNA segment 11625 to 15947): Exon 1 14835 15148 ( 314 n); cDNA 262 576 ( 315 n); score: 0.947 MATCH C09HBa0047I13.1+ SGN-E331220+ 0.947 314 0.545 C PGS_C09HBa0047I13.1+_SGN-E331220+ (14835 15148) Alignment (genomic DNA sequence = upper lines): TTTTTACAGG TCAATGGAAT CTTTATGCTC AAAACCCCGA TTCAAGTAGT CATTTATTTG 14894 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTACAGG TCAATGGAAT CTTTATGCTC AAAACCCCGA TTCAAGTAGT CATTTATTTG 321 GTACCGCCGA AGGGGCGGGA ACGACCATTC TAACTCTTCT CGGGGGATTC CACCCACAAA 14954 |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| GTACCGCCGA AGGGGCGGGA ACGGCCATTC TAACTCTTCT CGGGGGATTC CACCCACAAA 381 CACAAAGTTT ACGGCTGACT GATATTGCCC ATTATCATTT AGCTATTGTA TTTATTTTTC 15014 | |||||||| | |||||||| |||||||||| || | ||||| |||||||| | |||||||||| CGCAAAGTTT ATGGCTGACT GATATTGCCC ATCACCATTT AGCTATTGCA TTTATTTTTC 441 TTGTTGCTGG TCATATGTAT AGAACCAATT TCTGGATTGG GCACAATATG AAAGATATTT 15074 |||||||||| |||||||||| |||||||||| || ||||||| ||||| |||| |||||| ||| TTGTTGCTGG TCATATGTAT AGAACCAATT TCGGGATTGG GCACAGTATG AAAGATCTTT 501 TAAATGCACA TATTCCTCC- GGGGGACGAT TGGGGCGTGG ACATAAGGGT CTTTGTGATT 15133 || ||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||| ||| TAGATGCACA TATTCCTCCG GGGGGACGAT TGGGGCGTGG ACATAAGGGT CTTTATGACA 561 CAATCATCAA TTCGC 15148 |||||| ||| ||||| CAATCAACAA TTCGC 576 hqPGS_C09HBa0047I13.1+_SGN-E331220+ (14835 15148) ******************************************************************************** EST sequence 26 -strand 698 n (File: SGN-E262289-) 1 TTTATGAAGA TGGCAAGAAT TACGCAGAGA NCGTATTTAA GAGCGATCAT TTGTTAGAAC 61 AAGGTGCAAT GCATTATGGT TTTCCTCTGA TAAATTAAGA TACTCTTTGC TCAACTCCTA 121 GAGATGGGAA TAAGTTGTTA TGTCAACAAA AATCTAATGA TAGTTATGAT GATCGAACAT 181 ATGAGGGAGA ACCACCCGTT TGATTATGGA AAGAGATCAG TCAAAATCTT TCAAGTATTG 241 ATCCATCTCA CATTTTGTAA TATATTCACA GTAGCTATAA CTACAAAAAG AAAAACTATT 301 AGCGGCAATA AACATGCACA TTAACAAAGA GTGCTAAAGC CGTTACAAGC ATTAGTTAAT 361 TGTAATTGGA TCCTATGTCT CAATAGGCTT TAGAGACATT TACAAAGAAT GTTAATTGCC 421 TCTAAGAACA TATTTAGCAA CAATTAAGCT CTCTTCACTA ATTAATTGCT ACTAAAGATC 481 ATTTTCGGTG TAGTGTATTA TCACAACATT AAAAAAAAAG AAGCAAACTT GATGATGACA 541 ATATTTTGCA TTTTGGGCTT GCAAAAAGGA TTGAGTGGCT TCAACAAGAA AAACAAAGCA 601 TTTGGTATCA GTGTTCAAGT TGCAACTGAA ATAATTCAAA TTGTTCTACT TGTAAGCACC 661 ATTGTTTTTT GTAAGTTAAC TGGTAAAAGA TGATATTC Predicted gene structure (within gDNA segment 30924 to 34062): Exon 1 32154 32848 ( 695 n); cDNA 1 696 ( 696 n); score: 0.883 MATCH C09HBa0047I13.1+ SGN-E262289- 0.883 695 0.996 C PGS_C09HBa0047I13.1+_SGN-E262289- (32154 32848) Alignment (genomic DNA sequence = upper lines): TTTATGAAGA TGGTAAGAAT TATGCAAAGG ACAATATTAA GAGCAACCAT TTGTCAGAAA 32213 |||||||||| ||| |||||| || ||| || | |||| |||| | ||| |||| || || TTTATGAAGA TGGCAAGAAT TACGCAGAGA NCGTATTTAA GAGCGATCAT TTGTTAG-AA 59 AAAGGTGCAG TGCATTATGG TTTTCCTTTG AATGGATTAA GATACTCTTT GCTCAACTCC 32273 |||||||| |||||||||| ||||||| || || ||||| |||||||||| |||||||||| CAAGGTGCAA TGCATTATGG TTTTCCTCTG -ATAAATTAA GATACTCTTT GCTCAACTCC 118 TAGAGATAGA AATACGTTGT TATGTCAACA AAAATCCAGT GATAGTTATG GTGATCAAAC 32333 ||||||| | |||| ||||| |||||||||| |||||| | | |||||||||| ||||| ||| TAGAGATGGG AATAAGTTGT TATGTCAACA AAAATCTAAT GATAGTTATG ATGATCGAAC 178 ATGTGAGGGG GAACCACCCG TTTGATTATG GAAAGAGCTC AGTCAGAATC TTTCAGGTAT 32393 || |||||| |||||||||| |||||||||| ||||||| || ||||| |||| ||||| ||| ATATGAGGGA GAACCACCCG TTTGATTATG GAAAGAGATC AGTCAAAATC TTTCAAGTA- 237 GTTGATCCAT CTCACATTTT TGTAATATAT TCACATTTTC TATAACTTAA AAAAAGACAA 32453 ||||||||| |||||| ||| |||||||||| ||||| | | ||||||| | |||| | || -TTGATCCAT CTCACA-TTT TGTAATATAT TCACAGTAGC TATAACTACA AAAAGAAAAA 295 CTTTTAGCGG CAAT-AACAT GCACATTAAC AAATAGTGCT AAAGCCATTA CATGCATTAA 32512 || ||||||| |||| ||||| |||||||||| ||| |||||| |||||| ||| || |||||| CTATTAGCGG CAATAAACAT GCACATTAAC AAAGAGTGCT AAAGCCGTTA CAAGCATTAG 355 TTAATTGTCA TTGGATCCTA TATCTCAATA GGCTTTAGAG ACATTTCCAA AGAATATTAA 32572 |||||||| | |||||||||| | |||||||| |||||||||| |||||| ||| ||||| |||| TTAATTGTAA TTGGATCCTA TGTCTCAATA GGCTTTAGAG ACATTTACAA AGAATGTTAA 415 TTGCCTCAAA GAATATATTT AGCAACAATT AAGCTATTTT CATTAATTAA TTGCTACTAA 32632 ||||||| || ||| |||||| |||||||||| ||||| | || || ||||||| |||||||||| TTGCCTCTAA GAACATATTT AGCAACAATT AAGCTCTCTT CACTAATTAA TTGCTACTAA 475 AGATCATTTT TGGTGTAGTG TATTATCACA ACATT---AA AAAA-ATGCA AACTTGATGA 32688 |||||||||| ||||||||| |||||||||| ||||| || |||| | ||| |||||||||| AGATCATTTT CGGTGTAGTG TATTATCACA ACATTAAAAA AAAAGAAGCA AACTTGATGA 535 TGACAATATT TTGCATTTTG GGCTTG-TAA AATGATTGAG TGGCTTCAAC AAGAAAAACA 32747 |||||||||| |||||||||| |||||| || || ||||||| |||||||||| |||||||||| TGACAATATT TTGCATTTTG GGCTTGCAAA AAGGATTGAG TGGCTTCAAC AAGAAAAACA 595 AAGCATTTGG TATCAGTGTT CAAGTTGCAA CTGAAGTAAT TCAAATTGTT CCACGTGTAA 32807 |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| | || ||||| AAGCATTTGG TATCAGTGTT CAAGTTGCAA CTGAAATAAT TCAAATTGTT CTACTTGTAA 655 GCACCGTTGT TTTTTGTAAG TTAACGGGTA AAAGATGACA T 32848 ||||| |||| |||||||||| ||||| |||| |||||||| | | GCACCATTGT TTTTTGTAAG TTAACTGGTA AAAGATGATA T 696 hqPGS_C09HBa0047I13.1+_SGN-E262289- (32154 32848) ******************************************************************************** EST sequence 28 -strand 610 n (File: SGN-E551107-) 1 ATAAATTAAG ATACTCTTTG CTCAACTCCT AGAGATGGGA ATAAGTTGTT ATGTCAACAA 61 AAATCTAATG ATAGTTATGA TGATCGAACA TATGAGGGAG AACCACCCGT TTGATTATGG 121 AAAGAGATCA GTCAAAATCT TTCAAGTATT GATCCATCTC ACATTTTGTA ATATATTCAC 181 AGTAGCTATA ACTACAAAAA GAAAAACTAT TAGGGGCAAT AAACATGCAC ATTAACAAAG 241 AGTGCTAAAG CCGTTACAAG CATTAGTTAA TTGTAATTGG ATCCTATGTC TCAATAGGCT 301 TTAGAGACAT TTACAAAGAA TGTTAATTGC CTCTAAGAAC ATATTTAGCA ACAATTAAGC 361 TCTCTTCACT AATTAATTGC TACTAAAGAT CATTTTCGGT GTAGTGTATT ATCACAACAT 421 TAAAAAAAAA GAAGCAAACT TGATGAGGAC AATATTTTGC ATTTTGGGCT TGCAAAAAGG 481 ATTGAGTGGC TTCAACAAGA AAAACAAAGC ATTTGGTATC AGTGTTCAAG TTGCAACTGA 541 AATAATTCAA ATTGTTCTAC TTGTAAGCAC CATTGTTTTT TGTAAGTTAA CTGGTAAAAG 601 ATGATATTCG Predicted gene structure (within gDNA segment 31599 to 34072): Exon 1 32245 32848 ( 604 n); cDNA 1 607 ( 607 n); score: 0.891 MATCH C09HBa0047I13.1+ SGN-E551107- 0.891 604 0.990 C PGS_C09HBa0047I13.1+_SGN-E551107- (32245 32848) Alignment (genomic DNA sequence = upper lines): ATGGATTAAG ATACTCTTTG CTCAACTCCT AGAGATAGAA ATACGTTGTT ATGTCAACAA 32304 || |||||| |||||||||| |||||||||| |||||| | | ||| |||||| |||||||||| ATAAATTAAG ATACTCTTTG CTCAACTCCT AGAGATGGGA ATAAGTTGTT ATGTCAACAA 60 AAATCCAGTG ATAGTTATGG TGATCAAACA TGTGAGGGGG AACCACCCGT TTGATTATGG 32364 ||||| | || ||||||||| ||||| |||| | |||||| | |||||||||| |||||||||| AAATCTAATG ATAGTTATGA TGATCGAACA TATGAGGGAG AACCACCCGT TTGATTATGG 120 AAAGAGCTCA GTCAGAATCT TTCAGGTATG TTGATCCATC TCACATTTTT GTAATATATT 32424 |||||| ||| |||| ||||| |||| ||| |||||||||| ||||| |||| |||||||||| AAAGAGATCA GTCAAAATCT TTCAAGTA-- TTGATCCATC TCACA-TTTT GTAATATATT 177 CACATTTTCT ATAACTTAAA AAAAGACAAC TTTTAGCGGC AAT-AACATG CACATTAACA 32483 |||| | || |||||| || ||| | ||| | |||| ||| ||| |||||| |||||||||| CACAGTAGCT ATAACTACAA AAAGAAAAAC TATTAGGGGC AATAAACATG CACATTAACA 237 AATAGTGCTA AAGCCATTAC ATGCATTAAT TAATTGTCAT TGGATCCTAT ATCTCAATAG 32543 || ||||||| ||||| |||| | |||||| | ||||||| || |||||||||| ||||||||| AAGAGTGCTA AAGCCGTTAC AAGCATTAGT TAATTGTAAT TGGATCCTAT GTCTCAATAG 297 GCTTTAGAGA CATTTCCAAA GAATATTAAT TGCCTCAAAG AATATATTTA GCAACAATTA 32603 |||||||||| ||||| |||| |||| ||||| |||||| ||| || ||||||| |||||||||| GCTTTAGAGA CATTTACAAA GAATGTTAAT TGCCTCTAAG AACATATTTA GCAACAATTA 357 AGCTATTTTC ATTAATTAAT TGCTACTAAA GATCATTTTT GGTGTAGTGT ATTATCACAA 32663 |||| | ||| | |||||||| |||||||||| ||||||||| |||||||||| |||||||||| AGCTCTCTTC ACTAATTAAT TGCTACTAAA GATCATTTTC GGTGTAGTGT ATTATCACAA 417 CATT---AAA AAA-ATGCAA ACTTGATGAT GACAATATTT TGCATTTTGG GCTTG-TAAA 32718 |||| ||| ||| | |||| ||||||||| |||||||||| |||||||||| ||||| ||| CATTAAAAAA AAAGAAGCAA ACTTGATGAG GACAATATTT TGCATTTTGG GCTTGCAAAA 477 ATGATTGAGT GGCTTCAACA AGAAAAACAA AGCATTTGGT ATCAGTGTTC AAGTTGCAAC 32778 | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGATTGAGT GGCTTCAACA AGAAAAACAA AGCATTTGGT ATCAGTGTTC AAGTTGCAAC 537 TGAAGTAATT CAAATTGTTC CACGTGTAAG CACCGTTGTT TTTTGTAAGT TAACGGGTAA 32838 |||| ||||| |||||||||| || |||||| |||| ||||| |||||||||| |||| ||||| TGAAATAATT CAAATTGTTC TACTTGTAAG CACCATTGTT TTTTGTAAGT TAACTGGTAA 597 AAGATGACAT 32848 ||||||| || AAGATGATAT 607 hqPGS_C09HBa0047I13.1+_SGN-E551107- (32245 32848) ******************************************************************************** EST sequence 45 +strand 479 n (File: SGN-E206529+) 1 TTTGAGGCCT GGTGGTGAAT TTCAGGGATT ACCCATTCCG GAGTGGAAGT GGGACCGCAT 61 TACTATGGAT TTTGTGGCTG GTCTACCGAG GACTTCTAGA GGATTTGATA GTATTTGGGT 121 CATCGTTGAT CGATTGACCA AGTCAGCACA TTTCCTTTTC GTTCAATCTT CATTTAGTGC 181 CGAGAGGTTG GCTCGTATCT ACATTCGGGA GGTGGTTCGA CTTCATGGGG TGCCAGTTTC 241 TATTATATCA GATCGGGGTT CTCAGTTCAC GTCTAGCTTT TGGAGGACCT TTCAGGATGA 301 GTTGGGCACC CAGGTTGACC TGAGCACAGC TTTCCACCCG CAGACTGATG GTCAGTCAGA 361 GCGCACTATT CAGGTCCTTG AGGACATGCT ACGGGCTTGT GTTTTGGAGT TTGGTGGTCA 421 ATGGGACCAG TTCTTGCCTT TGGCGGAATT TGCATATAAC AACAGCTACA ATTCTAGCA Predicted gene structure (within gDNA segment 39065 to 36504): Exon 1 38123 37645 ( 479 n); cDNA 1 479 ( 479 n); score: 0.891 MATCH C09HBa0047I13.1- SGN-E206529+ 0.891 479 1.000 C PGS_C09HBa0047I13.1-_SGN-E206529+ (38123 37645) Alignment (genomic DNA sequence = upper lines): TTTGAGGTCT GGTGGTGCAT TTAAGAGATT ATCCATTTCG GAGTGGAAGT GGGACCGCAT 38064 ||||||| || ||||||| || || || |||| | ||||| || |||||||||| |||||||||| TTTGAGGCCT GGTGGTGAAT TTCAGGGATT ACCCATTCCG GAGTGGAAGT GGGACCGCAT 60 TACTATGGAT TTTGTGGCTG GCCTACCACA AACTTCTAAA GGAGTTGATA GTATTTATGT 38004 |||||||||| |||||||||| | ||||| ||||||| | ||| |||||| |||||| || TACTATGGAT TTTGTGGCTG GTCTACCGAG GACTTCTAGA GGATTTGATA GTATTTGGGT 120 CATCGTTGAT CAATTGACCA AGTCAGCTCA TTTCCTTCCC GTTCAGTCTT TATTTAGTGT 37944 |||||||||| | |||||||| ||||||| || ||||||| | ||||| |||| |||||||| CATCGTTGAT CGATTGACCA AGTCAGCACA TTTCCTTTTC GTTCAATCTT CATTTAGTGC 180 CGTGAGGTTG GCTCGTATCT ACATTTGGGA GGTGGTTCGA TTTCATGGGG TGCCAGTTTC 37884 || ||||||| |||||||||| ||||| |||| |||||||||| ||||||||| |||||||||| CGAGAGGTTG GCTCGTATCT ACATTCGGGA GGTGGTTCGA CTTCATGGGG TGCCAGTTTC 240 TATTATATCA GATCGGGGTT CTCAGTTCAC TTCTTGATTT AAGACGACCT TTCAGGATGA 37824 |||||||||| |||||||||| |||||||||| ||| | ||| || ||||| |||||||||| TATTATATCA GATCGGGGTT CTCAGTTCAC GTCTAGCTTT TGGAGGACCT TTCAGGATGA 300 GTTGGGCACC CGGGTTGACC TTAGCGCAGC TTTCCACCCG CAGACTGATG ATCAGTCAGA 37764 |||||||||| | |||||||| | ||| |||| |||||||||| |||||||||| ||||||||| GTTGGGCACC CAGGTTGACC TGAGCACAGC TTTCCACCCG CAGACTGATG GTCAGTCAGA 360 GCATACTATT CAGGTCCTTG AGGATATGCT ACATGTTTGT GTTTTGGAGT TTGGTGGTCA 37704 || |||||| |||||||||| |||| ||||| || | |||| |||||||||| |||||||||| GCGCACTATT CAGGTCCTTG AGGACATGCT ACGGGCTTGT GTTTTGGAGT TTGGTGGTCA 420 GTAGGACCAG TTCTCGCCTT TGGCGCAGTT TGCGTATAAC AGCATCTTCC ATTCTAACA 37645 | ||||||| |||| ||||| ||||| | || ||| |||||| | || || | |||||| || ATGGGACCAG TTCTTGCCTT TGGCGGAATT TGCATATAAC AACAGCTACA ATTCTAGCA 479 hqPGS_C09HBa0047I13.1-_SGN-E206529+ (38123 37645) ******************************************************************************** EST sequence 60 +strand 527 n (File: SGN-E310812+) 1 TCTCTCTATT TTTTTATTCC AAACCTGATT TCTTGGCACC TTCAAGTTCA ATTTTTACAG 61 TTCTATTGTC TTCTAAACAA TATCTTCCGT AATCGGGATT GCCTAGAGTT TGTCTCAATG 121 TACTCTCAAT TAAACATAGA TCAAGATCAA ATGAAGATAG ACAACGCAAC ATGAGGACAG 181 AACCAAGAAC ATGAAAAAGA TAACGAGGAA CAACTGCCAA ATTAATTCCA GACAGTAGTA 241 GCCTTGGCTA TTTCATTTTT ATTGGGTATC ATTGTGCCAG TTTTTACTGC TGCATTTATA 301 GCAAATTATA AGGTCAGATT GGCTGTGAAT GATGAATGTG GTTGCAATGA GCTTGCCAGT 361 TGTCATTATT AGCATTTGGA GGAATTGGTA CTTTTTTAAG CACAAGTCCT ATGGTGAAAT 421 CTTGTCAAAG AGTTTTAATT GGAGGCAAGA TGGCTATGGC CATTACTTGT TGCCTTGCTA 481 AGCTGATTGG CTCTACTACA AGTATTTCTT TCTATTGTGG ATCTACG Predicted gene structure (within gDNA segment 48971 to 44334): Exon 1 48227 48133 ( 95 n); cDNA 2 96 ( 95 n); score: 0.847 Intron 1 48132 45979 (2154 n); Pd: 0.992 (s: 0.85), Pa: 0.997 (s: 0.90) Exon 2 45978 45556 ( 423 n); cDNA 97 527 ( 431 n); score: 0.868 MATCH C09HBa0047I13.1- SGN-E310812+ 0.864 518 0.983 C PGS_C09HBa0047I13.1-_SGN-E310812+ (48227 48133,45978 45556) Alignment (genomic DNA sequence = upper lines): CTCTATTTCT TTTTTCTTCC AAACCTGATT TCTTGGCACT TTTCAGCTCA A-TTTTACAG 48169 |||| | | | ||||| |||| |||||||||| ||||||||| || || ||| | |||||||| CTCTCTAT-T TTTTTATTCC AAACCTGATT TCTTGGCACC TTCAAGTTCA ATTTTTACAG 60 TTCTATTGTC TTCTCAACAA TATCTTTCGA AATCAGGTAA GCTATTCTCT CATTTTTTGC 48109 |||||||||| |||| ||||| |||||| || |||| | TTCTATTGTC TTCTAAACAA TATCTTCCGT AATCGG.... .......... .......... 96 GAGCGAAACA AAACAGAGAA CTCCTTCAAT TCTTAGAATT CTTTTGAAAT TTTAAAATGT 48049 .......... .......... .......... .......... .......... .......... 96 GTCAGTTCAA ATTTTGTTCA TATCCAATCT GATTGTTTTT TTTTTTCTGT TTTCCTGCCA 47989 .......... .......... .......... .......... .......... .......... 96 CAAAAAATCA TTTTTCATTT CCATCTCATG TCATGTTTTT TTCTATTTTC ATCCTTTGGA 47929 .......... .......... .......... .......... .......... .......... 96 CTTATTTGTG GAGGTATATT GTGTTAATTT TGTGTTAATA CTTGAGTTCT TGAACCAATC 47869 .......... .......... .......... .......... .......... .......... 96 TAGCAAGTTC ATTCAGAGTT ATACTATGCC TATTGTTAAT CTCTAACTAA TTTGATTCAT 47809 .......... .......... .......... .......... .......... .......... 96 GATTGTAGTG AAGGTTTGAA GGACAATTGT TTTATTTCTA TATGCATGTC TAATTTTCCT 47749 .......... .......... .......... .......... .......... .......... 96 CTACTCTGAT TCTCTGGCCT TCGGTCCTCT CTACAATTTT ACTTTTTTAA TTATCCTACT 47689 .......... .......... .......... .......... .......... .......... 96 CTATAAACAA CGCTGACCAT GTCTTGATAC AACACCCATC TTTAAGAAAG TAACGCTTCT 47629 .......... .......... .......... .......... .......... .......... 96 TGAACTAACA AGTACTTATA ACTTCTTAAT GAGATGCTCA AAACCAAGTC TGGGTTACCA 47569 .......... .......... .......... .......... .......... .......... 96 TTCCTAAAGA CCATAATGGC CAGAAGCAAG CCCTTGAGGA GGATTTTGAT TATGAGCACA 47509 .......... .......... .......... .......... .......... .......... 96 GTGGGTTTGA GCCGTTGTTC TAGGAGCCAA TGACGGATCA AAAATTCTAA TTCGCAATTT 47449 .......... .......... .......... .......... .......... .......... 96 CATAATCCAA AATTGGTCCT AGTTACTCTT CTGGTCAACT CACTGTCGAT TCAATTTCTC 47389 .......... .......... .......... .......... .......... .......... 96 TGCTATTTCT TTGAACTTCC ATAAAAACAT TTCAAGAGTT TTAGTATTAT CTTATGCATT 47329 .......... .......... .......... .......... .......... .......... 96 AGTTGACTAA TGCTGCTTGT TGTGCTGGTT AGAAAAAATT GGATGTATTT GCATGAAAAA 47269 .......... .......... .......... .......... .......... .......... 96 GATTAAGTTT GTTTCAGATA TTGTAATTCT TGGGCCCTCT CAAAGATGTT GTGACAAGCA 47209 .......... .......... .......... .......... .......... .......... 96 TATGCCCTAC TATTTCTGGT CATATATCTC CCCCATTTTC TCTTAATTGT TATAATCAAG 47149 .......... .......... .......... .......... .......... .......... 96 ATACTAAAAG GATAGAACAA TATGTTACTG ACAAAAGTTC AAAATTGTTG CTTAGAGGTA 47089 .......... .......... .......... .......... .......... .......... 96 TAAAGCTATT TATAATGTAA AGATCAACAA AAGTGGATAC ATTTGAAAAA TAAGATCTTC 47029 .......... .......... .......... .......... .......... .......... 96 CAACTATTTG AAAGTTATAG ACAATAAAAA CAACATACTC AATGTAGTCC CACAAAATGA 46969 .......... .......... .......... .......... .......... .......... 96 TGTTTGCACT TTGTGGAGGG TAGAGTGTAT GCAAAACCTT AGCTATGCTT TAGAGGTAGA 46909 .......... .......... .......... .......... .......... .......... 96 CAGAATGTTG TATTATTGAT GACAATTAAT GATATGAAAG TTGATCTTGC TTTGTCATAC 46849 .......... .......... .......... .......... .......... .......... 96 TTACAGGAAG GAGTATTCAA TAGTAAATAT ACTTCCATAC TTTTTTTCAA ACTGTTAACT 46789 .......... .......... .......... .......... .......... .......... 96 TTATATGCTT CTCTGTTTTG AGTATTGGTT CTTCAATATC CTTATTTATG TTGTGTTAAG 46729 .......... .......... .......... .......... .......... .......... 96 CTACAGTTGA TACACTTAAA GGAGCAAATA TGCTCCTTAC TCTACAAATT CATGTGTCAC 46669 .......... .......... .......... .......... .......... .......... 96 CTTAGGCTTC TTATACGGCC TCATATGTGA CGAGACTCAG TACTGAGGTG CAAATTATTC 46609 .......... .......... .......... .......... .......... .......... 96 TCTCGCTCCT CTTTGGGTAA ACAATGAAGA TAATCTTCAC TATGAAGCTT ATTTGGTTCA 46549 .......... .......... .......... .......... .......... .......... 96 TGTTCTCTTT TTTTATTTCA ATGATTTGAA GTAAATTGAA TTATATTTAC CATAGTTGTG 46489 .......... .......... .......... .......... .......... .......... 96 TAAAAATACT TGAATAATTT TTAGACGGAA TCATATTCCT GGGCAACTGC TCTTTCTTAA 46429 .......... .......... .......... .......... .......... .......... 96 AGCATTTAAA TGTATAAAGG TGAAACAAAA GGTGACTGCA TGTGATTAGT GTTAAAGAGA 46369 .......... .......... .......... .......... .......... .......... 96 TAAAATGTTG CTGCATTATA GTTTTATGAA CTGATAAATT ATTTTGATTA AAATTTGTTG 46309 .......... .......... .......... .......... .......... .......... 96 GTTCAGAGAT TATTGCACCT ATACATGTAA GTTATTATTC CAGCACGGTA CTGCATTCTT 46249 .......... .......... .......... .......... .......... .......... 96 TTATGCATAA TTACATAAGA GTTGTTGTAT TAATAAAGTT ATTTGTTATC TTTATATTCA 46189 .......... .......... .......... .......... .......... .......... 96 AGAAGTCTTG AGTTACAAAT ACAAGCACCA TAAAGCTAAA AAGGTAAGTG AAGCTATATT 46129 .......... .......... .......... .......... .......... .......... 96 ACTTAAGCCA ATCAAGGCAT AAACTATTAA TTTCTACGTA ATTGATATAA ACTAATATTT 46069 .......... .......... .......... .......... .......... .......... 96 TATAAGTTAC ATTATCATGA ATGAAGTGAA TTGGACATTG TTAATTGATG TCAATTCATT 46009 .......... .......... .......... .......... .......... .......... 96 TGACTGTTTT GGGTTTGCCG GTGCTTGCAG GATGTCCTAG AGTTTGTCTC AATGTACTCT 45949 ||| ||||| |||||||||| |||||||||| .......... .......... .......... GATTGCCTAG AGTTTGTCTC AATGTACTCT 126 CAATTTGACA TAGAGCAAGA TCAAATGAAT ATAGACAACA CAACATGAGG ACAAAACCAA 45889 ||||| ||| |||| ||||| ||||||||| ||||||||| |||||||||| ||| |||||| CAATTAAACA TAGATCAAGA TCAAATGAAG ATAGACAACG CAACATGAGG ACAGAACCAA 186 GAACATGAAA AAGATAACGA GGAACAACTG CCAAATTCAT TCCAAACAGT AGTAGCCTTG 45829 |||||||||| |||||||||| |||||||||| ||||||| || |||| ||||| |||||||||| GAACATGAAA AAGATAACGA GGAACAACTG CCAAATTAAT TCCAGACAGT AGTAGCCTTG 246 GTTATTTCAT TTTCATTTGG TATCATTGTG TCAATTTTTA CTGTTGCA-T TATAGCAAAT 45770 | |||||||| ||| ||| || |||||||||| || |||||| ||| |||| | |||||||||| GCTATTTCAT TTTTATTGGG TATCATTGTG CCAGTTTTTA CTGCTGCATT TATAGCAAAT 306 TATAAGGT-- GA--GACTG- G-TTG-TGAA TGTGGCTGCA ATGAGATTGT CAGTTGTCAT 45717 |||||||| || | ||| | || |||| ||||| |||| ||||| ||| |||||||||| TATAAGGTCA GATTGGCTGT GAATGATGAA TGTGGTTGCA ATGAGCTTGC CAGTTGTCAT 366 TGTTAGCATT TGGAGGAATT GGTACTTTTT TAAGCACAAG TCCTATGGTG AAATCTTGTC 45657 | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTAGCATT TGGAGGAATT GGTACTTTTT TAAGCACAAG TCCTATGGTG AAATCTTGTC 426 CAAGAGTTTT AATTGGAGGC AAGATGGCTA TGGTCATTAC CTTTTGCCTT ACCAAGCTGA 45597 ||||||||| |||||||||| |||||||||| ||| |||||| | ||||||| | ||||||| AAAGAGTTTT AATTGGAGGC AAGATGGCTA TGGCCATTAC TTGTTGCCTT GCTAAGCTGA 486 TTAACTCTAC TACAAGTATT TATTTCTGAT TTTAATCTAC G 45556 || |||||| |||||||||| | ||||| | | |||||| | TTGGCTCTAC TACAAGTATT TCTTTCTATT GTGGATCTAC G 527 hqPGS_C09HBa0047I13.1-_SGN-E310812+ (48227 48133,45978 45556) ******************************************************************************** EST sequence 59 +strand 819 n (File: SGN-E544298+) 1 ATTGCTTCTA ACTAACAAGT ACTTATAACT TACTCAATGG CTGCTCAAAA CCAAGTCCAA 61 ATCACCATTC CTAAAGACCA TAATGGCCAG AAGCAAACCC CCGGGGATGA TTTTGACTAC 121 TCTCAAAGAG CACAGTGGGT TAGAGCTGCT GTTCTAGGAG CCAATGATGG ATTGGTCTCA 181 ATTGCATCCT TGATGATGGG TGTTGGAGCT GTCCAAAAAG ACGTAAAGGC CATGATACTT 241 ATTGGCTTTG CAGGTCTGTT TGCCGGTGCT TGTAGCATGG CCATAGGAGA GTTTGTCTCT 301 GTGTATTCTC AATTAGACAT AGAGAGAGCT CAAATGAAGA GAGACAAAGC AGCAGCAGGA 361 CAGAATCAAG AACATGAAGA AGGTAACAAG GAACAGCTGC CAAATCCATT TCAGGCAGCT 421 GTTGCCTCGG CTATTGCATT TTCATTGGGT GCCATTGTTC CAATTCTTGC TGCTGCATTT 481 ATAGCAAACC ATAAGGTGAG GCTGGCTGTG ATTGTGGCTG CAGTGAGCTT GGCATTGTTA 541 GCATTTGGAG GAATTGGTGC TTTCTTGGGC AGAAGTCCAA TGGTGAAATC TTGTGCCAGA 601 GTTTTAATTG GTGGATGGAT GGCTATGGCC ATTACCTTTG GCCTTACCAA GCTAATTGGC 661 TCTAGTACTG GCATGGAGTT GTGACTGGAC CCTTTATCAA GTTCAGAATC ATCTTCTTAA 721 GAAGTCGTTG TTGCATCATC CATGTCCAGT AAAATTTCAT TTTCTGTATG ATTCTGATGC 781 AAATGCTTAC AAAAATGGTA TTGAAGTGTT GGCTATTAA Predicted gene structure (within gDNA segment 48316 to 39700): Exon 1 47634 47473 ( 162 n); cDNA 4 170 ( 167 n); score: 0.753 Intron 1 47472 47438 ( 35 n); Pd: 0.000 (s: 0.57), Pa: 0.000 (s: 0) Exon 2 47437 47416 ( 22 n); cDNA 171 191 ( 21 n); score: 0.636 Intron 2 47415 46843 ( 573 n); Pd: 0.350 (s: 0), Pa: 0.718 (s: 0) Exon 3 46842 46837 ( 6 n); cDNA 192 196 ( 5 n); score: 0.667 Intron 3 46836 46303 ( 534 n); Pd: 0.714 (s: 0), Pa: 0.936 (s: 0) Exon 4 46302 46283 ( 20 n); cDNA 197 216 ( 20 n); score: 0.550 Intron 4 46282 46158 ( 125 n); Pd: 0.611 (s: 0), Pa: 0.000 (s: 0.56) Exon 5 46157 46113 ( 45 n); cDNA 217 258 ( 42 n); score: 0.556 Intron 5 46112 45996 ( 117 n); Pd: 0.988 (s: 0.56), Pa: 0.000 (s: 0.65) Exon 6 45995 45584 ( 412 n); cDNA 259 668 ( 410 n); score: 0.792 MATCH C09HBa0047I13.1- SGN-E544298+ 0.781 667 0.814 C PGS_C09HBa0047I13.1-_SGN-E544298+ (47634 47473,47437 47416,46842 46837,46302 46283,46157 46113,45995 45584) Alignment (genomic DNA sequence = upper lines): GCTTCTTGAA CTAACAAGTA CTTATAACTT -CTTAATGAG ATGCTCAAAA CCAAGTCTGG 47576 ||||| | || |||||||||| |||||||||| || |||| | ||||||||| ||||||| GCTTC-T-AA CTAACAAGTA CTTATAACTT ACTCAATG-G CTGCTCAAAA CCAAGTCCAA 60 GTTACCATTC CTAAAGACCA TAATGGCCAG AAGCAAGCCC TTGAGGAGGA TTTTGATTA- 47517 | ||||||| |||||||||| |||||||||| |||||| ||| | ||| || |||||| || ATCACCATTC CTAAAGACCA TAATGGCCAG AAGCAAACCC CCGGGGATGA TTTTGACTAC 120 T------GAG CACAGTGGGT TTGAGCCGTT GTTCTAGGAG CCAATGACGG ATCAAAAATT 47463 | ||| |||||||||| | |||| | | |||||||||| ||||||| || TCTCAAAGAG CACAGTGGGT TAGAGCTGCT GTTCTAGGAG CCAATGATGG .......... 170 CTAATTCGCA ATTTCATAAT CCAAAATTGG TCCTAGTTAC TCTTCTGGTC AACTCACTGT 47403 ||||| || | || | | || .......... .......... .....ATTGG TCTCAATTGC -ATCCTT... .......... 191 CGATTCAATT TCTCTGCTAT TTCTTTGAAC TTCCATAAAA ACATTTCAAG AGTTTTAGTA 47343 .......... .......... .......... .......... .......... .......... 191 TTATCTTATG CATTAGTTGA CTAATGCTGC TTGTTGTGCT GGTTAGAAAA AATTGGATGT 47283 .......... .......... .......... .......... .......... .......... 191 ATTTGCATGA AAAAGATTAA GTTTGTTTCA GATATTGTAA TTCTTGGGCC CTCTCAAAGA 47223 .......... .......... .......... .......... .......... .......... 191 TGTTGTGACA AGCATATGCC CTACTATTTC TGGTCATATA TCTCCCCCAT TTTCTCTTAA 47163 .......... .......... .......... .......... .......... .......... 191 TTGTTATAAT CAAGATACTA AAAGGATAGA ACAATATGTT ACTGACAAAA GTTCAAAATT 47103 .......... .......... .......... .......... .......... .......... 191 GTTGCTTAGA GGTATAAAGC TATTTATAAT GTAAAGATCA ACAAAAGTGG ATACATTTGA 47043 .......... .......... .......... .......... .......... .......... 191 AAAATAAGAT CTTCCAACTA TTTGAAAGTT ATAGACAATA AAAACAACAT ACTCAATGTA 46983 .......... .......... .......... .......... .......... .......... 191 GTCCCACAAA ATGATGTTTG CACTTTGTGG AGGGTAGAGT GTATGCAAAA CCTTAGCTAT 46923 .......... .......... .......... .......... .......... .......... 191 GCTTTAGAGG TAGACAGAAT GTTGTATTAT TGATGACAAT TAATGATATG AAAGTTGATC 46863 .......... .......... .......... .......... .......... .......... 191 TTGCTTTGTC ATACTTACAG GAAGGAGTAT TCAATAGTAA ATATACTTCC ATACTTTTTT 46803 | | || .......... .......... G-ATGA.... .......... .......... .......... 196 TCAAACTGTT AACTTTATAT GCTTCTCTGT TTTGAGTATT GGTTCTTCAA TATCCTTATT 46743 .......... .......... .......... .......... .......... .......... 196 TATGTTGTGT TAAGCTACAG TTGATACACT TAAAGGAGCA AATATGCTCC TTACTCTACA 46683 .......... .......... .......... .......... .......... .......... 196 AATTCATGTG TCACCTTAGG CTTCTTATAC GGCCTCATAT GTGACGAGAC TCAGTACTGA 46623 .......... .......... .......... .......... .......... .......... 196 GGTGCAAATT ATTCTCTCGC TCCTCTTTGG GTAAACAATG AAGATAATCT TCACTATGAA 46563 .......... .......... .......... .......... .......... .......... 196 GCTTATTTGG TTCATGTTCT CTTTTTTTAT TTCAATGATT TGAAGTAAAT TGAATTATAT 46503 .......... .......... .......... .......... .......... .......... 196 TTACCATAGT TGTGTAAAAA TACTTGAATA ATTTTTAGAC GGAATCATAT TCCTGGGCAA 46443 .......... .......... .......... .......... .......... .......... 196 CTGCTCTTTC TTAAAGCATT TAAATGTATA AAGGTGAAAC AAAAGGTGAC TGCATGTGAT 46383 .......... .......... .......... .......... .......... .......... 196 TAGTGTTAAA GAGATAAAAT GTTGCTGCAT TATAGTTTTA TGAACTGATA AATTATTTTG 46323 .......... .......... .......... .......... .......... .......... 196 ATTAAAATTT GTTGGTTCAG AGATTATTGC ACCTATACAT GTAAGTTATT ATTCCAGCAC 46263 | | ||| | || | || .......... .......... TGGGTGTTGG AGCTGTCCAA .......... .......... 216 GGTACTGCAT TCTTTTATGC ATAATTACAT AAGAGTTGTT GTATTAATAA AGTTATTTGT 46203 .......... .......... .......... .......... .......... .......... 216 TATCTTTATA TTCAAGAAGT CTTGAGTTAC AAATACAAGC ACCATAAAGC TAAAAAGGTA 46143 |||| ||||| .......... .......... .......... .......... .....AAAGA CGTAAAGGCC 231 AGTGAAGCTA TATTACTTAA GCCAATCAAG GCATAAACTA TTAATTTCTA CGTAATTGAT 46083 | ||| || |||| | || || | A-TGATACT- TATTGGCTTT GCAGGTC-TG .......... .......... .......... 258 ATAAACTAAT ATTTTATAAG TTACATTATC ATGAATGAAG TGAATTGGAC ATTGTTAATT 46023 .......... .......... .......... .......... .......... .......... 258 GATGTCAATT CATTTGACTG TTTTGGGTTT GCCGGTGCTT GCAGGATGTC C-TAG---AG 45967 ||| |||||||||| | || ||| | | ||| || .......... .......... .......TTT GCCGGTGCTT GTAGCATGGC CATAGGAGAG 291 TTTGTCTCAA TGTACTCTCA ATTTGACATA GAGCAAGATC AAATGAATAT AGACAACACA 45907 |||||||| |||| ||||| ||| |||||| ||| || || ||||||| | |||||| || TTTGTCTCTG TGTATTCTCA ATTAGACATA GAGAGAGCTC AAATGAAGAG AGACAAAGCA 351 ACATGAGGAC AAAACCAAGA ACATGAAAAA GATAACGAGG AACAACTGCC AAATTCATTC 45847 || ||||| | || ||||| ||||||| || | |||| ||| |||| ||||| |||| |||| GCAGCAGGAC AGAATCAAGA ACATGAAGAA GGTAACAAGG AACAGCTGCC AAATCCATTT 411 CAAACAGTAG TAGCCTTGGT TATTTCATTT TCATTTGGTA TCATTGTGTC AATTTTTACT 45787 || ||| | | |||| || |||| ||||| ||||| ||| |||||| | |||| || || CAGGCAGCTG TTGCCTCGGC TATTGCATTT TCATTGGGTG CCATTGTTCC AATTCTTGCT 471 GTTGCA-TTA TAGCAAATTA TAAGGTGAGA CTGGTTGTGA ATGTGGCTGC AATGAGATTG 45728 | |||| ||| ||||||| | ||||||||| |||| ||||| ||||||||| | | || | GCTGCATTTA TAGCAAACCA TAAGGTGAGG CTGGCTGTGA TTGTGGCTGC -A-GTGA--G 527 TCAGTTGTCA TTGTTAGCAT TTGGAGGAAT TGGTACTTTT TTAAGCACAA GTCCTATGGT 45668 | ||| || |||||||||| |||||||||| |||| |||| || ||| || |||| ||||| -C--TTGGCA TTGTTAGCAT TTGGAGGAAT TGGTGCTTTC TTGGGCAGAA GTCCAATGGT 584 GAAATCTTGT CCAAGAGTTT TAATTGGAGG CAAGATGGCT ATGGTCATTA CCTTTTGCCT 45608 |||||||||| | ||||||| ||||||| || ||||||| |||| ||||| ||||| |||| GAAATCTTGT GCCAGAGTTT TAATTGGTGG ATGGATGGCT ATGGCCATTA CCTTTGGCCT 644 TACCAAGCTG ATTAACTCTA CTAC 45584 ||||||||| ||| ||||| ||| TACCAAGCTA ATTGGCTCTA GTAC 668 hqPGS_C09HBa0047I13.1-_SGN-E544298+ (47634 47473,47437 47416,46842 46837,46302 46283,46157 46113,45995 45584) ******************************************************************************** EST sequence 39 +strand 413 n (File: SGN-E307423+) 1 AACTAACAAG TACTTATAAC TTACTCAATG GCTGCTCAAA ACCAAGTCCA AATCACCATT 61 CCTAAAGACC ATAATGGCCA GAAGCAAACC CCCGGGGATG ATTTTGACTA CTCTCAAAGA 121 GCACAGTGGG TTAGAGCTGC TGTTCTAGGA GCCAATGATG GATTGGTCTC AATTGCATCC 181 TTGATGATGG GTGTTGGAGC TGTCCAAAAA GACGTAAAGG CCATGATACT TATTGGCTTT 241 GCAGGTCTGT TTGCCGGTGC TTGTAGCATG GCCATAGGAG AGTTTGTCTC TGTGTATTCT 301 CAATTAGACA TAGAGAGAGC TCAAATGAAG AGAGACAAAG CAGCAGCGTG ACAGAATCAA 361 GAACATGAAG AAGGTAACAA GGAACAGCTG CCAAATCCAT TTCAGGCAGC TGT Predicted gene structure (within gDNA segment 48226 to 43670): Exon 1 47626 47473 ( 154 n); cDNA 1 161 ( 161 n); score: 0.753 Intron 1 47472 47438 ( 35 n); Pd: 0.000 (s: 0.57), Pa: 0.000 (s: 0) Exon 2 47437 47416 ( 22 n); cDNA 162 182 ( 21 n); score: 0.636 Intron 2 47415 46843 ( 573 n); Pd: 0.350 (s: 0), Pa: 0.718 (s: 0) Exon 3 46842 46837 ( 6 n); cDNA 183 187 ( 5 n); score: 0.667 Intron 3 46836 46303 ( 534 n); Pd: 0.714 (s: 0), Pa: 0.936 (s: 0) Exon 4 46302 46283 ( 20 n); cDNA 188 207 ( 20 n); score: 0.550 Intron 4 46282 46158 ( 125 n); Pd: 0.611 (s: 0), Pa: 0.000 (s: 0.56) Exon 5 46157 46113 ( 45 n); cDNA 208 249 ( 42 n); score: 0.556 Intron 5 46112 45996 ( 117 n); Pd: 0.988 (s: 0.56), Pa: 0.000 (s: 0.65) Exon 6 45995 45836 ( 160 n); cDNA 250 413 ( 164 n); score: 0.744 MATCH C09HBa0047I13.1- SGN-E307423+ 0.748 407 0.985 C PGS_C09HBa0047I13.1-_SGN-E307423+ (47626 47473,47437 47416,46842 46837,46302 46283,46157 46113,45995 45836) Alignment (genomic DNA sequence = upper lines): AACTAACAAG TACTTATAAC TT-CTTAATG AGATGCTCAA AACCAAGTCT GGGTTACCAT 47568 |||||||||| |||||||||| || || |||| | ||||||| ||||||||| | ||||| AACTAACAAG TACTTATAAC TTACTCAATG -GCTGCTCAA AACCAAGTCC AAATCACCAT 59 TCCTAAAGAC CATAATGGCC AGAAGCAAGC CCTTGAGGAG GATTTTGATT A-T------G 47515 |||||||||| |||||||||| |||||||| | || | ||| |||||||| | | | | TCCTAAAGAC CATAATGGCC AGAAGCAAAC CCCCGGGGAT GATTTTGACT ACTCTCAAAG 119 AGCACAGTGG GTTTGAGCCG TTGTTCTAGG AGCCAATGAC GGATCAAAAA TTCTAATTCG 47455 |||||||||| ||| |||| | ||||||||| ||||||||| || AGCACAGTGG GTTAGAGCTG CTGTTCTAGG AGCCAATGAT GG........ .......... 161 CAATTTCATA ATCCAAAATT GGTCCTAGTT ACTCTTCTGG TCAACTCACT GTCGATTCAA 47395 ||| |||| | || | | || .......... .......ATT GGTCTCAATT GC-ATCCTT. .......... .......... 182 TTTCTCTGCT ATTTCTTTGA ACTTCCATAA AAACATTTCA AGAGTTTTAG TATTATCTTA 47335 .......... .......... .......... .......... .......... .......... 182 TGCATTAGTT GACTAATGCT GCTTGTTGTG CTGGTTAGAA AAAATTGGAT GTATTTGCAT 47275 .......... .......... .......... .......... .......... .......... 182 GAAAAAGATT AAGTTTGTTT CAGATATTGT AATTCTTGGG CCCTCTCAAA GATGTTGTGA 47215 .......... .......... .......... .......... .......... .......... 182 CAAGCATATG CCCTACTATT TCTGGTCATA TATCTCCCCC ATTTTCTCTT AATTGTTATA 47155 .......... .......... .......... .......... .......... .......... 182 ATCAAGATAC TAAAAGGATA GAACAATATG TTACTGACAA AAGTTCAAAA TTGTTGCTTA 47095 .......... .......... .......... .......... .......... .......... 182 GAGGTATAAA GCTATTTATA ATGTAAAGAT CAACAAAAGT GGATACATTT GAAAAATAAG 47035 .......... .......... .......... .......... .......... .......... 182 ATCTTCCAAC TATTTGAAAG TTATAGACAA TAAAAACAAC ATACTCAATG TAGTCCCACA 46975 .......... .......... .......... .......... .......... .......... 182 AAATGATGTT TGCACTTTGT GGAGGGTAGA GTGTATGCAA AACCTTAGCT ATGCTTTAGA 46915 .......... .......... .......... .......... .......... .......... 182 GGTAGACAGA ATGTTGTATT ATTGATGACA ATTAATGATA TGAAAGTTGA TCTTGCTTTG 46855 .......... .......... .......... .......... .......... .......... 182 TCATACTTAC AGGAAGGAGT ATTCAATAGT AAATATACTT CCATACTTTT TTTCAAACTG 46795 | | || .......... ..G-ATGA.. .......... .......... .......... .......... 187 TTAACTTTAT ATGCTTCTCT GTTTTGAGTA TTGGTTCTTC AATATCCTTA TTTATGTTGT 46735 .......... .......... .......... .......... .......... .......... 187 GTTAAGCTAC AGTTGATACA CTTAAAGGAG CAAATATGCT CCTTACTCTA CAAATTCATG 46675 .......... .......... .......... .......... .......... .......... 187 TGTCACCTTA GGCTTCTTAT ACGGCCTCAT ATGTGACGAG ACTCAGTACT GAGGTGCAAA 46615 .......... .......... .......... .......... .......... .......... 187 TTATTCTCTC GCTCCTCTTT GGGTAAACAA TGAAGATAAT CTTCACTATG AAGCTTATTT 46555 .......... .......... .......... .......... .......... .......... 187 GGTTCATGTT CTCTTTTTTT ATTTCAATGA TTTGAAGTAA ATTGAATTAT ATTTACCATA 46495 .......... .......... .......... .......... .......... .......... 187 GTTGTGTAAA AATACTTGAA TAATTTTTAG ACGGAATCAT ATTCCTGGGC AACTGCTCTT 46435 .......... .......... .......... .......... .......... .......... 187 TCTTAAAGCA TTTAAATGTA TAAAGGTGAA ACAAAAGGTG ACTGCATGTG ATTAGTGTTA 46375 .......... .......... .......... .......... .......... .......... 187 AAGAGATAAA ATGTTGCTGC ATTATAGTTT TATGAACTGA TAAATTATTT TGATTAAAAT 46315 .......... .......... .......... .......... .......... .......... 187 TTGTTGGTTC AGAGATTATT GCACCTATAC ATGTAAGTTA TTATTCCAGC ACGGTACTGC 46255 | | || | | || | | | .......... ..TGGGTGTT GGAGCTGTCC AA........ .......... .......... 207 ATTCTTTTAT GCATAATTAC ATAAGAGTTG TTGTATTAAT AAAGTTATTT GTTATCTTTA 46195 .......... .......... .......... .......... .......... .......... 207 TATTCAAGAA GTCTTGAGTT ACAAATACAA GCACCATAAA GCTAAAAAGG TAAGTGAAGC 46135 ||| | ||||| | ||| | .......... .......... .......... .......AAA GACGTAAAGG CCA-TGATAC 229 TATATTACTT AAGCCAATCA AGGCATAAAC TATTAATTTC TACGTAATTG ATATAAACTA 46075 | |||| | || || | T-TATTGGCT TTGCAGGTC- TG........ .......... .......... .......... 249 ATATTTTATA AGTTACATTA TCATGAATGA AGTGAATTGG ACATTGTTAA TTGATGTCAA 46015 .......... .......... .......... .......... .......... .......... 249 TTCATTTGAC TGTTTTGGGT TTGCCGGTGC TTGCAGGATG TCC-TAG--- AGTTTGTCTC 45959 | |||||||||| ||| || ||| || ||| |||||||||| .......... .........T TTGCCGGTGC TTGTAGCATG GCCATAGGAG AGTTTGTCTC 290 AATGTACTCT CAATTTGACA TAGAGCAAGA TCAAATGAAT ATAGACAACA CAACATGAGG 45899 |||| ||| ||||| |||| ||||| || ||||||||| | |||||| || || | TGTGTATTCT CAATTAGACA TAGAGAGAGC TCAAATGAAG AGAGACAAAG CAGCAGCGTG 350 ACAAAACCAA GAACATGAAA AAGATAACGA GGAACAACTG CCAAATTCAT TCCAAACAGT 45839 ||| || ||| ||||||||| ||| |||| | |||||| ||| |||||| ||| | || ||| ACAGAATCAA GAACATGAAG AAGGTAACAA GGAACAGCTG CCAAATCCAT TTCAGGCAGC 410 AGT 45836 || TGT 413 hqPGS_C09HBa0047I13.1-_SGN-E307423+ (47626 47473,47437 47416,46842 46837,46302 46283,46157 46113,45995 45836) ******************************************************************************** EST sequence 27 +strand 664 n (File: SGN-E348336+) 1 TTCAAGTTCA ATTTTTACAG TTCTATTGTC TTCTAAACAA TATCTTCCGT AATCGGGATT 61 GCCTAGAGTT TGTCTCAATG TACTCTCAAT TAAACATAGA TCAAGATCAA ATGAAGATAG 121 ACAACGCAAC ATGAGGACAG AACCAAGAAC ATGAAAAAGA TAACGAGGAA CAACTGCCAA 181 ATTAATTCCA GACAGTAGTA GCCTTGGCTA TTTCATTTTT ATTGGGTATC ATTGTGCCAG 241 TTTTTACTGC TGCATTTATA GCAAATTATA AGGTCAGATT GGCTGTGAAT GATGAATGTG 301 GTTGCAATGA GCTTGCCAGT TGTCATTATT AGCATTTGGA GGAATTGGTA CTTTTTTAAG 361 CACAAGTCCT ATGGTGAAAT CTTGTCAAAG AGTTTTAATT GGAGGCAAGA TGGCTATGGC 421 CATTACTTGT TGCCTTGCTA AGCTGATTGG CTCTACTACA AGTATTTCTT TCTATTTTGG 481 ATCTACGGTA AGTTTTTTTA CAAAAAAAAA AATTAATTCA AGAGGTCAAT GCTTATTTCA 541 AATGCCGAAA AAAGAAGTGG TTNTAAGTTT CATTTAAAGC ATGTTATTGA TGTACATGGT 601 GAATGATTAG GAGTGAATAA ATACTAATTT TATCAAGGGT CTCCTTGAAT ACTTCCTATT 661 CAAA Predicted gene structure (within gDNA segment 47183 to 42564): Exon 1 45978 45383 ( 596 n); cDNA 57 664 ( 608 n); score: 0.836 MATCH C09HBa0047I13.1- SGN-E348336+ 0.836 596 0.898 C PGS_C09HBa0047I13.1-_SGN-E348336+ (45978 45383) Alignment (genomic DNA sequence = upper lines): GATGTCCTAG AGTTTGTCTC AATGTACTCT CAATTTGACA TAGAGCAAGA TCAAATGAAT 45919 ||| ||||| |||||||||| |||||||||| ||||| ||| |||| ||||| ||||||||| GATTGCCTAG AGTTTGTCTC AATGTACTCT CAATTAAACA TAGATCAAGA TCAAATGAAG 116 ATAGACAACA CAACATGAGG ACAAAACCAA GAACATGAAA AAGATAACGA GGAACAACTG 45859 ||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| ATAGACAACG CAACATGAGG ACAGAACCAA GAACATGAAA AAGATAACGA GGAACAACTG 176 CCAAATTCAT TCCAAACAGT AGTAGCCTTG GTTATTTCAT TTTCATTTGG TATCATTGTG 45799 ||||||| || |||| ||||| |||||||||| | |||||||| ||| ||| || |||||||||| CCAAATTAAT TCCAGACAGT AGTAGCCTTG GCTATTTCAT TTTTATTGGG TATCATTGTG 236 TCAATTTTTA CTGTTGCA-T TATAGCAAAT TATAAGGT-- GA--GACTG- G-TTG-TGAA 45747 || |||||| ||| |||| | |||||||||| |||||||| || | ||| | || |||| CCAGTTTTTA CTGCTGCATT TATAGCAAAT TATAAGGTCA GATTGGCTGT GAATGATGAA 296 TGTGGCTGCA ATGAGATTGT CAGTTGTCAT TGTTAGCATT TGGAGGAATT GGTACTTTTT 45687 ||||| |||| ||||| ||| |||||||||| | |||||||| |||||||||| |||||||||| TGTGGTTGCA ATGAGCTTGC CAGTTGTCAT TATTAGCATT TGGAGGAATT GGTACTTTTT 356 TAAGCACAAG TCCTATGGTG AAATCTTGTC CAAGAGTTTT AATTGGAGGC AAGATGGCTA 45627 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| TAAGCACAAG TCCTATGGTG AAATCTTGTC AAAGAGTTTT AATTGGAGGC AAGATGGCTA 416 TGGTCATTAC CTTTTGCCTT ACCAAGCTGA TTAACTCTAC TACAAGTATT TATTTCTGAT 45567 ||| |||||| | ||||||| | ||||||| || |||||| |||||||||| | ||||| | TGGCCATTAC TTGTTGCCTT GCTAAGCTGA TTGGCTCTAC TACAAGTATT TCTTTCTATT 476 TTTAATCTAC GGTAA--TTT TTT-C--TTA AAATAA-TAA TTTAAGGCGT GAATGCTTAT 45513 || |||||| ||||| ||| ||| | | ||| || ||| || ||| || ||||||||| TTGGATCTAC GGTAAGTTTT TTTACAAAAA AAAAAATTAA TTCAAGAGGT CAATGCTTAT 536 TTTGAATGCT GAAAAAAAGA AGTGATTCTA AGTTGCATTT AAAGGAAGCT AATGCTCTAT 45453 || ||||| | |||||||| |||| || || |||| ||||| |||| | | | | || | || TTCAAATGCC G-AAAAAAGA AGTGGTTNTA AGTTTCATTT AAAGCATGTT ATTGATGTAC 595 ATGATGAATG ATTAGGAGCG AATAAAGACA AATTTTTATC ATGGGTCTCC TTGAGTACTT 45393 ||| |||||| |||||||| | |||||| || || ||||||| | |||||||| |||| ||||| ATGGTGAATG ATTAGGAGTG AATAAATACT AA-TTTTATC AAGGGTCTCC TTGAATACTT 654 CCTATTCAAA 45383 |||||||||| CCTATTCAAA 664 hqPGS_C09HBa0047I13.1-_SGN-E348336+ (45978 45383) ******************************************************************************** EST sequence 63 +strand 525 n (File: SGN-E273665+) 1 TTTATTTTTT GCTTCCAAAC CTGATTTCTT GGCACCTTGA AGTTCAATTG TACAGTTCTA 61 TTGTCTTCTC AACAATATCT TTCGTAATTG GATGCTCCAA AATCAAGTTT GGATTACCAT 121 TCCTAAAGAC CATCATGGCC AGAAGCAAGC CATTGAAGAG GATTTTGACT ATGAGCACAG 181 TGGGTTCGAG CCACTGTTCT AGGAGCAAAT GGCGAATTAG TTTCTATTGC ATCTTTTGTC 241 AGTTCTCTAT TTGTCCTCAC TGTCGATTTC AATTTCTCTG CTATTTCTTT GAACTTCCAT 301 ATAATTATTT CAAGAGTTTT AGTTTCCTCT TGTGCATTAA TTGACTAATG CTGCTTGTTG 361 TGCTGGTTAG GAAAATTGTG GATGTATTTA GACGAAAAAG ATTAAATTTG TTTCCAGATA 421 TTGTAATTCT TGGGTCCTCT CAAAGATGTT GTGACAAGCA TATGTCCTAC AATTTCTTGT 481 CAACCTCCTC TCAATATATC TCCCTATTTT CTTTTTAAAA AAAAA Predicted gene structure (within gDNA segment 48922 to 45985): Exon 1 48222 48133 ( 90 n); cDNA 2 91 ( 90 n); score: 0.878 Intron 1 48132 47596 ( 537 n); Pd: 0.992 (s: 0.90), Pa: 0.000 (s: 0.87) Exon 2 47595 47192 ( 404 n); cDNA 92 477 ( 386 n); score: 0.832 MATCH C09HBa0047I13.1- SGN-E273665+ 0.840 494 0.941 C PGS_C09HBa0047I13.1-_SGN-E273665+ (48222 48133,47595 47192) Alignment (genomic DNA sequence = upper lines): TTTCTTTTTT CTTCCAAACC TGATTTCTTG GCACTTTTCA GCTCAATTTT ACAGTTCTAT 48163 || ||||| |||||||||| |||||||||| |||| || | | |||||| | |||||||||| TTATTTTTTG CTTCCAAACC TGATTTCTTG GCACCTTGAA GTTCAATTGT ACAGTTCTAT 61 TGTCTTCTCA ACAATATCTT TCGAAATCAG GTAAGCTATT CTCTCATTTT TTGCGAGCGA 48103 |||||||||| |||||||||| ||| ||| | TGTCTTCTCA ACAATATCTT TCGTAATTGG .......... .......... .......... 91 AACAAAACAG AGAACTCCTT CAATTCTTAG AATTCTTTTG AAATTTTAAA ATGTGTCAGT 48043 .......... .......... .......... .......... .......... .......... 91 TCAAATTTTG TTCATATCCA ATCTGATTGT TTTTTTTTTT CTGTTTTCCT GCCACAAAAA 47983 .......... .......... .......... .......... .......... .......... 91 ATCATTTTTC ATTTCCATCT CATGTCATGT TTTTTTCTAT TTTCATCCTT TGGACTTATT 47923 .......... .......... .......... .......... .......... .......... 91 TGTGGAGGTA TATTGTGTTA ATTTTGTGTT AATACTTGAG TTCTTGAACC AATCTAGCAA 47863 .......... .......... .......... .......... .......... .......... 91 GTTCATTCAG AGTTATACTA TGCCTATTGT TAATCTCTAA CTAATTTGAT TCATGATTGT 47803 .......... .......... .......... .......... .......... .......... 91 AGTGAAGGTT TGAAGGACAA TTGTTTTATT TCTATATGCA TGTCTAATTT TCCTCTACTC 47743 .......... .......... .......... .......... .......... .......... 91 TGATTCTCTG GCCTTCGGTC CTCTCTACAA TTTTACTTTT TTAATTATCC TACTCTATAA 47683 .......... .......... .......... .......... .......... .......... 91 ACAACGCTGA CCATGTCTTG ATACAACACC CATCTTTAAG AAAGTAACGC TTCTTGAACT 47623 .......... .......... .......... .......... .......... .......... 91 AACAAGTACT TATAACTTCT TAATGAGATG CT-CAAAACC AAGTCTGGGT TACCATTCCT 47564 ||| || ||||| | |||| ||| | |||||||||| .......... .......... .......ATG CTCCAAAATC AAGTTTGGAT TACCATTCCT 124 AAAGACCATA ATGGCCAGAA GCAAGCCCTT GAGGAGGATT TTGATTATGA GCACAGTGGG 47504 ||||||||| |||||||||| ||||||| || || ||||||| |||| ||||| |||||||||| AAAGACCATC ATGGCCAGAA GCAAGCCATT GAAGAGGATT TTGACTATGA GCACAGTGGG 184 TTTGAGCCGT TGTTCTAGGA GCCAATGACG GATCAAAAAT TCTAATTCGC AATTTCATAA 47444 || ||||| |||||||||| || |||| || || | | ||| ||| || | || | TTCGAGCCAC TGTTCTAGGA GCAAATGGCG AAT--TAGTT TCT-ATT-GC -A--TC-T-- 234 TCCAAAATTG GTCCTAGTTA CTCTTCTGGT CAACTCACTG TCGA-TTCAA TTTCTCTGCT 47385 | || || | |||| |||| | || | ||||||| |||| ||||| |||||||||| T------TT- GT-C-AGTT- CTCTATTTGT C--CTCACTG TCGATTTCAA TTTCTCTGCT 282 ATTTCTTTGA ACTTCCATAA AAACATTTCA AGAGTTTTAG TATTATCTTA TGCATTAGTT 47325 |||||||||| ||||||||| || |||||| |||||||||| | | |||| ||||||| || ATTTCTTTGA ACTTCCATAT AATTATTTCA AGAGTTTTAG TTTCCTCTTG TGCATTAATT 342 GACTAATGCT GCTTGTTGTG CTGGTTAGAA AAAAT-TGGA TGTATTTGCA TGAAAAAGAT 47266 |||||||||| |||||||||| |||||||| | ||| | |||| ||||||| | ||||||||| GACTAATGCT GCTTGTTGTG CTGGTTAGGA AAATTGTGGA TGTATTTAGA CGAAAAAGAT 402 TAAGTTTGTT T-CAGATATT GTAATTCTTG GGCCCTCTCA AAGATGTTGT GACAAGCATA 47207 ||| |||||| | |||||||| |||||||||| || ||||||| |||||||||| |||||||||| TAAATTTGTT TCCAGATATT GTAATTCTTG GGTCCTCTCA AAGATGTTGT GACAAGCATA 462 TGCCCTACTA TTTCT 47192 || ||||| | ||||| TGTCCTACAA TTTCT 477 hqPGS_C09HBa0047I13.1-_SGN-E273665+ (48222 48133,47595 47192) ******************************************************************************** EST sequence 57 +strand 582 n (File: SGN-E275852+) 1 AAAACCTTAG CTATGCCTTA GAGGTAGAGA GAATGTTGTA TTATTGATGA CATGAAATTA 61 TAGATATGAA ATTTGATCTT GCTTTGGCCT ACTTAAAGGA AGGAATATTC AATATCAAAT 121 ATACTTCCAT ACATTTTTTC AAACTGTTAA CTTTATATTC TTCTCTATTT CGAGTATTGG 181 TTCTTCAATA TCCTCCTTTA TGTTGTGTTA AGCTACAGTT AAGACACTTA ATGGAGAAAA 241 TATACTCCTT ACTCTACAAA TTCATGTGTC ACCTTAGGCT TCTTAAATGA CCTCATATGT 301 GACGAGACTC AGTACTAAGG TGCACATTAT CTTGTCGCTC CTCTTTGGGT AAACACAGAA 361 GATATTCTTT ATTATGAAGC TTATTTGGTT CATGTTCTCT TTTTTTTATT TCAATGATTT 421 AAAGTAAATT AAATTATTTT TACCATAGTT GTGTAAAAAA ATACTTGATT AATTTGTAGA 481 TGGAATCATA TTCGTGGGCA ACTACACTTT CTTAAAGCAT TTAAATGTAT AAAGGTGAAA 541 CAAAAGGTGA CCGCATGTGC TTTGTGTTAA AGAGATAAAA TA Predicted gene structure (within gDNA segment 47536 to 45743): Exon 1 46936 46363 ( 574 n); cDNA 1 581 ( 581 n); score: 0.888 MATCH C09HBa0047I13.1- SGN-E275852+ 0.888 574 0.986 C PGS_C09HBa0047I13.1-_SGN-E275852+ (46936 46363) Alignment (genomic DNA sequence = upper lines): AAAACCTTAG CTATGCTTTA GAGGTAGACA GAATGTTGTA TTATTGATGA C----AATTA 46881 |||||||||| |||||| ||| |||||||| | |||||||||| |||||||||| | ||||| AAAACCTTAG CTATGCCTTA GAGGTAGAGA GAATGTTGTA TTATTGATGA CATGAAATTA 60 ATGATATGAA AGTTGATCTT GCTTTGTCAT ACTTACAGGA AGGAGTATTC AATAGTAAAT 46821 |||||||| | |||||||| |||||| | | ||||| |||| |||| ||||| |||| |||| TAGATATGAA ATTTGATCTT GCTTTGGCCT ACTTAAAGGA AGGAATATTC AATATCAAAT 120 ATACTTCCAT ACTTTTTTTC AAACTGTTAA CTTTATATGC TTCTCTGTTT TGAGTATTGG 46761 |||||||||| || ||||||| |||||||||| |||||||| | |||||| ||| ||||||||| ATACTTCCAT ACATTTTTTC AAACTGTTAA CTTTATATTC TTCTCTATTT CGAGTATTGG 180 TTCTTCAATA TCCTTATTTA TGTTGTGTTA AGCTACAGTT GATACACTTA AAGGAGCAAA 46701 |||||||||| |||| |||| |||||||||| |||||||||| | ||||||| | |||| ||| TTCTTCAATA TCCTCCTTTA TGTTGTGTTA AGCTACAGTT AAGACACTTA ATGGAGAAAA 240 TATGCTCCTT ACTCTACAAA TTCATGTGTC ACCTTAGGCT TCTTATACGG CCTCATATGT 46641 ||| |||||| |||||||||| |||||||||| |||||||||| ||||| | | |||||||||| TATACTCCTT ACTCTACAAA TTCATGTGTC ACCTTAGGCT TCTTAAATGA CCTCATATGT 300 GACGAGACTC AGTACTGAGG TGCAAATTAT TCTCTCGCTC CTCTTTGGGT AAACAATGAA 46581 |||||||||| |||||| ||| |||| ||||| | |||||| |||||||||| ||||| ||| GACGAGACTC AGTACTAAGG TGCACATTAT CTTGTCGCTC CTCTTTGGGT AAACACAGAA 360 GATAATCTTC ACTATGAAGC TTATTTGGTT CATGTTCTCT T-TTTTTATT TCAATGATTT 46522 |||| |||| | |||||||| |||||||||| |||||||||| | |||||||| |||||||||| GATATTCTTT ATTATGAAGC TTATTTGGTT CATGTTCTCT TTTTTTTATT TCAATGATTT 420 GAAGTAAATT GAATTATATT TACCATAGTT GTGT--AAAA ATACTTGAAT AATTTTTAGA 46464 ||||||||| |||||| || |||||||||| |||| |||| |||||||| | ||||| |||| AAAGTAAATT AAATTATTTT TACCATAGTT GTGTAAAAAA ATACTTGATT AATTTGTAGA 480 CGGAATCATA TTCCTGGGCA ACTGCTCTTT CTTAAAGCAT TTAAATGTAT AAAGGTGAAA 46404 ||||||||| ||| |||||| ||| | |||| |||||||||| |||||||||| |||||||||| TGGAATCATA TTCGTGGGCA ACTACACTTT CTTAAAGCAT TTAAATGTAT AAAGGTGAAA 540 CAAAAGGTGA CTGCATGTGA TTAGTGTTAA AGAGATAAAA T 46363 |||||||||| | ||||||| || ||||||| |||||||||| | CAAAAGGTGA CCGCATGTGC TTTGTGTTAA AGAGATAAAA T 581 hqPGS_C09HBa0047I13.1-_SGN-E275852+ (46936 46363) ******************************************************************************** EST sequence 11 -strand 417 n (File: SGN-E264499-) 1 GTGACAAGCA TATGTCCTAC AATTTNTTGT CAACCTCCTC TCAATATATC TCCCTATTTT 61 CTTTTTAAGT GTTATAATCA AGATAATAAA AGGATAGAAC AATATGTTAC TGACAAAAGT 121 TCAAAATTGT TGCTTAGAGC TTAGAATTAT AATGCTATTT ATAATGTAAA GATCAGCAAA 181 AGTGGATACA TTTGAAAAAT AAGAGCTTCC AACTATTTGA AAGTTGTAGA CAAAAACAAC 241 AACATACTCA GTGTAGTCCC ACAAAATGAT GTTTGCACTT TGTGGAGGGT AGAGTGTATG 301 CAAAACCTTA GTTATGCCTT AGAGGTAAAG AGAATGTTGT ATTATTGATG ACATGAAATT 361 AATGAAATGA AAATTGATCT TGCTTTGGCC TACTTAAAAA AAAAAAAAAA AAAAAAC Predicted gene structure (within gDNA segment 48461 to 45267): Exon 1 47187 46829 ( 359 n); cDNA 44 413 ( 370 n); score: 0.831 MATCH C09HBa0047I13.1- SGN-E264499- 0.831 359 0.861 C PGS_C09HBa0047I13.1-_SGN-E264499- (47187 46829) Alignment (genomic DNA sequence = upper lines): ATATATCTCC CCCATTTTCT CTTAATTGTT ATAATCAAGA TACTAAAAGG ATAGAACAAT 47128 |||||||||| | ||| | |||| |||| |||||||||| || ||||||| |||||||||| ATATATCTCC CTATTTTCTT TTTAAGTGTT ATAATCAAGA TAATAAAAGG ATAGAACAAT 103 ATGTTACTGA CAAAAGTTCA AAATTGTTGC TTAGAG---- GTA-TA-AA- GCTATTTATA 47075 |||||||||| |||||||||| |||||||||| |||||| | | || || |||||||||| ATGTTACTGA CAAAAGTTCA AAATTGTTGC TTAGAGCTTA GAATTATAAT GCTATTTATA 163 ATGTAAAGAT CAACAAAAGT GGATACATTT GAAAAATAAG ATCTTCCAAC TATTTGAAAG 47015 |||||||||| || ||||||| |||||||||| |||||||||| | |||||||| |||||||||| ATGTAAAGAT CAGCAAAAGT GGATACATTT GAAAAATAAG AGCTTCCAAC TATTTGAAAG 223 TTATAGACAA TAAAAACAAC ATACTCAATG TAGTCCCACA AAATGATGTT TGCACTTTGT 46955 || ||||||| || |||||| ||||||| || |||||||||| |||||||||| |||||||||| TTGTAGACAA AAACAACAAC ATACTCAGTG TAGTCCCACA AAATGATGTT TGCACTTTGT 283 GGAGGGTAGA GTGTATGCAA AACCTTAGCT ATGCTTTAGA GGTAGACAGA ATGTTGTATT 46895 |||||||||| |||||||||| |||||||| | |||| ||||| |||| | ||| |||||||||| GGAGGGTAGA GTGTATGCAA AACCTTAGTT ATGCCTTAGA GGTAAAGAGA ATGTTGTATT 343 ATTGATGAC- ---AATTAAT GATATGAAAG TTGATCTTGC TTTGTCATAC TTACAGGAAG 46839 ||||||||| ||||||| || |||||| |||||||||| |||| | ||| ||| | || ATTGATGACA TGAAATTAAT GAAATGAAAA TTGATCTTGC TTTGGCCTAC TTAAAAAAAA 403 GAGTATTCAA 46829 | | || AAAAAAAAAA 413 hqPGS_C09HBa0047I13.1-_SGN-E264499- (47187 46829) ******************************************************************************** EST sequence 37 +strand 258 n (File: SGN-E342715+) 1 CACAGTGGGT TCGAGCCACT GTTCTAGGAG CAAATGGCGA ATTAGTTTCT ATTGCATCTT 61 TTGTCAGTTC TCTATTTGTC CTCACTGTCG ATTTCAATTT CTCTGCTATT TCTTTGAACT 121 TCCATATAAT TATTTCAAGA GTTTTAGTTT CCTCTTGTGC ATTAATTGAC TAATGCTGCT 181 TGTTGTGCTG GTTAGGAAAA TTGTGGATGT ATTTAGACGA AAAAGATTAA ATTTGTTTCA 241 GATATTGTAA AAAAAAAA Predicted gene structure (within gDNA segment 48919 to 46057): Exon 1 47409 47243 ( 167 n); cDNA 82 250 ( 169 n); score: 0.886 MATCH C09HBa0047I13.1- SGN-E342715+ 0.886 167 0.647 C PGS_C09HBa0047I13.1-_SGN-E342715+ (47409 47243) Alignment (genomic DNA sequence = upper lines): TCACTGTCGA T-TCAATTTC TCTGCTATTT CTTTGAACTT CCATAAAAAC ATTTCAAGAG 47351 |||||||||| | |||||||| |||||||||| |||||||||| ||||| || |||||||||| TCACTGTCGA TTTCAATTTC TCTGCTATTT CTTTGAACTT CCATATAATT ATTTCAAGAG 141 TTTTAGTATT ATCTTATGCA TTAGTTGACT AATGCTGCTT GTTGTGCTGG TTAGAAAAAA 47291 ||||||| | |||| |||| ||| |||||| |||||||||| |||||||||| |||| |||| TTTTAGTTTC CTCTTGTGCA TTAATTGACT AATGCTGCTT GTTGTGCTGG TTAGGAAAAT 201 T-TGGATGTA TTTGCATGAA AAAGATTAAG TTTGTTTCAG ATATTGTAA 47243 | |||||||| ||| | ||| ||||||||| |||||||||| ||||||||| TGTGGATGTA TTTAGACGAA AAAGATTAAA TTTGTTTCAG ATATTGTAA 250 hqPGS_C09HBa0047I13.1-_SGN-E342715+ (47409 47243) ******************************************************************************** EST sequence 66 +strand 594 n (File: SGN-E299508+) 1 AGAACTAGTC TCGAGTTTTT TTTTTTTCCA AACCTGATTT CTTGGCACCT TCAAGTTCAA 61 TTTTTACAGT TCTATTGTCT TCTAAACAAT ATCTTCCGTA ATCGGGTATG CTATTCTCTC 121 ATTTTTTTTG TTGGCGAAAC AAAACAGAGA ACTCCTTTAA TTCTTAGAAT TATTTTAAAA 181 TTTTAAAATA TGTTTGTTCA GAATCTGTTC ATATCCAATC TAATTGGTTT TTTCTTTTCT 241 GTTTTCCAGC CACACAAAAA AATCATTTTT CATTTCCAAC TCCTATCATG TTTTTCCTAT 301 TTTCATCATT TGGACTTACT TATGGAGGTA TACTGTGTTA ATTTTGTGTT AATACTTGGG 361 TTCTTGAACT AATTTAGCAA GTTCATTGAG TGTTATACTA TGTCTATTGT AGATCTCTAA 421 CTCATTTGAT TCATGATTGT AGTGAAGGTT TGAAGGACAA TTGTTTTATT TCTATATGCA 481 TGTCTATTTG TCCTCTCCTC CAATTCTCTG GCCTTCGGTC CTCTCTACAA TTATACTTTT 541 TTATTATCCT ACTCTATAAA CATTGCTGAC CAAGTCTTCA TAAAAACACC CATC Predicted gene structure (within gDNA segment 49061 to 46750): Exon 1 48234 47649 ( 586 n); cDNA 3 594 ( 592 n); score: 0.858 MATCH C09HBa0047I13.1- SGN-E299508+ 0.858 586 0.987 C PGS_C09HBa0047I13.1-_SGN-E299508+ (48234 47649) Alignment (genomic DNA sequence = upper lines): AAAGTCCCTC TATTTCTTTT TTCTTCCAAA CCTGATTTCT TGGCACTTTT CAGCTCAA-T 48176 || ||| | || |||| || ||||||| |||||||||| |||||| || || |||| | AACTAGTCTC GAGTTTTTTT TTTTTCCAAA CCTGATTTCT TGGCACCTTC AAGTTCAATT 62 TTTACAGTTC TATTGTCTTC TCAACAATAT CTTTCGAAAT CAGGTAAGCT ATTCTCTCAT 48116 |||||||||| |||||||||| | |||||||| ||| || ||| | |||| ||| |||||||||| TTTACAGTTC TATTGTCTTC TAAACAATAT CTTCCGTAAT CGGGTATGCT ATTCTCTCAT 122 TTTTTGCG-A -GCGAAACAA AACAGAGAAC TCCTTCAATT CTTAGAATTC TTTTGAAATT 48058 ||||| | ||||||||| |||||||||| ||||| |||| ||||||||| |||| ||||| TTTTTTTGTT GGCGAAACAA AACAGAGAAC TCCTTTAATT CTTAGAATTA TTTTAAAATT 182 TTAAAATGTG TCAGTTCAAA TTTTGTTCAT ATCCAATCTG ATT-GTTTTT TTTTTTCTGT 47999 ||||||| || | ||||| | | ||||||| ||||||||| ||| |||||| | |||||||| TTAAAATATG TTTGTTCAGA ATCTGTTCAT ATCCAATCTA ATTGGTTTTT TCTTTTCTGT 242 TTTCCTG-C- CAC-AAAAAA TCATTTTTCA TTTCCATCTC ATGTCATGTT TTTTTCTATT 47942 ||||| | | ||| |||||| |||||||||| |||||| ||| | ||||| | |||| ||||| TTTCCAGCCA CACAAAAAAA TCATTTTTCA TTTCCAACTC CTATCATG-T TTTTCCTATT 301 TTCATCCTTT GGACTTATTT GTGGAGGTAT ATTGTGTTAA TTTTGTGTTA ATACTTGAGT 47882 |||||| ||| ||||||| || ||||||||| | |||||||| |||||||||| ||||||| || TTCATCATTT GGACTTACTT ATGGAGGTAT ACTGTGTTAA TTTTGTGTTA ATACTTGGGT 361 TCTTGAACCA ATCTAGCAAG TTCATTCAGA GTTATACTAT GCCTATTGTT AATCTCTAAC 47822 |||||||| | || ||||||| |||||| || |||||||||| | ||||||| ||||||||| TCTTGAACTA ATTTAGCAAG TTCATTGAGT GTTATACTAT GTCTATTGTA GATCTCTAAC 421 TAATTTGATT CATGATTGTA GTGAAGGTTT GAAGGACAAT TGTTTTATTT CTATATGCAT 47762 | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATTTGATT CATGATTGTA GTGAAGGTTT GAAGGACAAT TGTTTTATTT CTATATGCAT 481 GTCTAATTTT CCTCTACTCT GATTCTCTGG CCTTCGGTCC TCTCTACAAT TTTACTTTTT 47702 ||||| || | ||||| ||| ||||||||| |||||||||| |||||||||| | |||||||| GTCTATTTGT CCTCTCCTCC AATTCTCTGG CCTTCGGTCC TCTCTACAAT TATACTTTTT 541 TAATTATCCT ACTCTATAAA CAACGCTGAC CATGTCTTGA T-ACAACACC CATC 47649 | |||||||| |||||||||| || |||||| || ||||| | | | |||||| |||| T-ATTATCCT ACTCTATAAA CATTGCTGAC CAAGTCTTCA TAAAAACACC CATC 594 hqPGS_C09HBa0047I13.1-_SGN-E299508+ (48234 47649) ******************************************************************************** EST sequence 68 +strand 469 n (File: SGN-E248160+) 1 ACAACTCAAA GTCTCTCTAT TTTTTTATTC CAAACCTGAT TTCTTGGCAC CTTCAAGTTC 61 AATTTTTACA GTTCTATTGT CTTCTAAACA ATATCTTCCG TAATCGGGTA TGCTATTCTC 121 TCATTTTTTT TGTTGGCGAA ACAAAACAGA GAACTCCTTT AATTCTTAGA ATTATTTTAA 181 AATTTTAAAA TATGTTTGTT CAGAATCTGT TCATATCCAA TCTAATTGGT TTTTTCTTTT 241 CTGTTTTCCA GCCACACAAA AAAATCATTT TTCATTTCCA ACTCCTATCA TGTTTTTCCT 301 ATTTTCATCA TTTGGACTTA CTTATGGAGG TATACTGTGT TAATTTTGTG TTAATACTTG 361 GGTTCTTGAA CTAATTTAGC AAGTTCATTG AGTGTTATAC TATGTCTATT GTAGATCTCT 421 AACTCATTTG ATTCATGATT GTAGTGAAGG TTTGAAGGAC AATTGTTTT Predicted gene structure (within gDNA segment 49081 to 47166): Exon 1 48241 47776 ( 466 n); cDNA 1 469 ( 469 n); score: 0.862 MATCH C09HBa0047I13.1- SGN-E248160+ 0.862 466 0.994 C PGS_C09HBa0047I13.1-_SGN-E248160+ (48241 47776) Alignment (genomic DNA sequence = upper lines): ACAACTCAAA GTCCCTCTAT TTCTTTTTTC TTCCAAACCT GATTTCTTGG CACTTTTCAG 48182 |||||||||| ||| |||||| || |||| |||||||||| |||||||||| ||| || || ACAACTCAAA GTCTCTCTAT TT---TTTTA TTCCAAACCT GATTTCTTGG CACCTTCAAG 57 CTCAA-TTTT ACAGTTCTAT TGTCTTCTCA ACAATATCTT TCGAAATCAG GTAAGCTATT 48123 |||| |||| |||||||||| |||||||| | |||||||||| || |||| | ||| |||||| TTCAATTTTT ACAGTTCTAT TGTCTTCTAA ACAATATCTT CCGTAATCGG GTATGCTATT 117 CTCTCA--TT TTTTGCGAGC GAAACAAAAC AGAGAACTCC TTCAATTCTT AGAATTCTTT 48065 |||||| || ||||| || |||||||||| |||||||||| || ||||||| |||||| ||| CTCTCATTTT TTTTGTTGGC GAAACAAAAC AGAGAACTCC TTTAATTCTT AGAATTATTT 177 TGAAATTTTA AAATGTGTCA GTTCAAATTT TGTTCATATC CAATCTGATT -GTTTTTTTT 48006 | |||||||| |||| ||| ||||| | | |||||||||| |||||| ||| ||||||| | TAAAATTTTA AAATATGTTT GTTCAGAATC TGTTCATATC CAATCTAATT GGTTTTTTCT 237 TTTCTGTTTT CCTG-C-CAC -AAAAAATCA TTTTTCATTT CCATCTCATG TCATGTTTTT 47949 |||||||||| || | | ||| ||||||||| |||||||||| ||| ||| | ||||| |||| TTTCTGTTTT CCAGCCACAC AAAAAAATCA TTTTTCATTT CCAACTCCTA TCATG-TTTT 296 TTCTATTTTC ATCCTTTGGA CTTATTTGTG GAGGTATATT GTGTTAATTT TGTGTTAATA 47889 | |||||||| ||| |||||| |||| || || |||||||| | |||||||||| |||||||||| TCCTATTTTC ATCATTTGGA CTTACTTATG GAGGTATACT GTGTTAATTT TGTGTTAATA 356 CTTGAGTTCT TGAACCAATC TAGCAAGTTC ATTCAGAGTT ATACTATGCC TATTGTTAAT 47829 |||| ||||| ||||| ||| |||||||||| ||| || ||| |||||||| | |||||| || CTTGGGTTCT TGAACTAATT TAGCAAGTTC ATTGAGTGTT ATACTATGTC TATTGTAGAT 416 CTCTAACTAA TTTGATTCAT GATTGTAGTG AAGGTTTGAA GGACAATTGT TTT 47776 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| ||| CTCTAACTCA TTTGATTCAT GATTGTAGTG AAGGTTTGAA GGACAATTGT TTT 469 hqPGS_C09HBa0047I13.1-_SGN-E248160+ (48241 47776) ******************************************************************************** EST sequence 6 +strand 332 n (File: SGN-E252547+) 1 GTTGTAAAGT CTCCTATGTA CTTTATGGTG TGGTTGTATG TCTTGATTGT ATGGTTTCTG 61 GTTGGCTAAA ATTACGAGAC TGCTGAATTT CTAATCTTGN CCATTTCTAT TAAAATGACG 121 CCTTGAATAA AGAAGATTGA TGAAATAAAA TAATGAATAA TGGATCGCAG TGTCACGTTC 181 CGACATGATA TTATTGGATC GGAGTGTCAC GTTCCGAAAC AATAACATTA AAGGAAATAA 241 ATCTTGAACT AACTTAATAT ATCTAATCTC AAAGAACCTA TTTTCCAAAT GAGTATGGTG 301 TGGAGCCATG AGTCCTCATA GGTGTGCTTG AT Predicted gene structure (within gDNA segment 49909 to 53313): Exon 1 51983 52183 ( 201 n); cDNA 2 197 ( 196 n); score: 0.856 Intron 1 52184 52217 ( 34 n); Pd: 0.000 (s: 0.90), Pa: 0.000 (s: 0.90) Exon 2 52218 52352 ( 135 n); cDNA 198 332 ( 135 n); score: 0.904 MATCH C09HBa0047I13.1+ SGN-E252547+ 0.875 336 1.012 C PGS_C09HBa0047I13.1+_SGN-E252547+ (51983 52183,52218 52352) Alignment (genomic DNA sequence = upper lines): TTGTAAAATC TCCTATGTGC TTGATTGTGT GGTTGTATGT TTAGATTGTG TGGTTTGTGA 52042 ||||||| || |||||||| | || || |||| |||||||||| | |||||| |||||| || TTGTAAAGTC TCCTATGTAC TTTATGGTGT GGTTGTATGT CTTGATTGTA TGGTTTCTGG 61 TTGGCCTAAA ATTATGAGGC TGTTGAATTT CTAATCTTGA ACCCTCTCTA TTAAAATGAA 52102 |||| ||||| |||| ||| | || ||||||| ||||||||| || | |||| ||||||||| TTGG-CTAAA ATTACGAGAC TGCTGAATTT CTAATCTTG- NCCATTTCTA TTAAAATGAC 119 GCCTTGAATA AATAAGGTTT CTTGAAACAA AATAATGAGA TAATTGGATC GGAGTGTCAT 52162 |||||||||| || || | || ||||| || |||||||| | ||| |||||| | ||||||| GCCTTGAATA AAGAA-GATT GATGAAATAA AATAATGA-A TAA-TGGATC GCAGTGTCAC 176 GTTCCGACAT GGTATTATTG GATCAGAGTG TCACGTTCCG ACACGGAATT ATGATATCGG 52222 |||||||||| | |||||||| | ||||| GTTCCGACAT GATATTATTG G......... .......... .......... .....ATCGG 202 AGTGTCACGT TCCGACACAA TAATATTAAA GGCAAGGAAT CTTGAAGTAA CTTAATATAT 52282 |||||||||| ||||| |||| ||| |||||| || || ||| |||||| ||| |||||||||| AGTGTCACGT TCCGAAACAA TAACATTAAA GGAAATAAAT CTTGAACTAA CTTAATATAT 262 TTAATCTCAA AGAACCTATT TTCCAAATGA GAATGGTATG GAGGCATGAG TCCTCATAAG 52342 ||||||||| |||||||||| |||||||||| | ||||| || ||| |||||| |||||||| | CTAATCTCAA AGAACCTATT TTCCAAATGA GTATGGTGTG GAGCCATGAG TCCTCATAGG 322 GGTGCTTAAT 52352 |||||| || TGTGCTTGAT 332 hqPGS_C09HBa0047I13.1+_SGN-E252547+ (51983 52183,52218 52352) ******************************************************************************** EST sequence 19 +strand 505 n (File: SGN-E353206+) 1 ATCGGAGTGT CACGTTCCGA AACAATAACA TTAAAGGAAA TAAATCTTGA ACTAACTTAA 61 TATATCTAAT CTCAAAGAAC CTATTTTCCA AATGAGTATG GTGTGGAGCC ATGAGTCCTC 121 ATAGGTGTGC TTGATGGTGT ACATGTTATG TTGTTGTTGT TAATGGTTCA TGTGTTTTGT 181 TGCTTGCCAC CTGTTAAGTA TTGTAGTTGA TTTTATATTA TTATTCAATA TATATTGATT 241 ATTATTTTGA GTTGACCGAT GATACCTACT CAGTACGTGT TCCTTGTACT GACCCCTACT 301 TGTATTTTCT TCTCTGTTTT TTTGTGGAGT GCAACAAGTG TACCATTGAC TACGACTCGC 361 CCTCATCTCT AACCAGTCTC CAGCACATCA GAGTTCAGGA TCTATGATGA TGGGAGTTAT 421 ATAGCTGAAA ATTTATAAGA GTTTCAAGTT TGATGTGATT GAGATTGACT TNCACTCTAT 481 ACCTTGATTT TTCGGTATCA ATGCG Predicted gene structure (within gDNA segment 51024 to 55028): Exon 1 52218 52629 ( 412 n); cDNA 1 398 ( 398 n); score: 0.877 Intron 1 52630 53609 ( 980 n); Pd: 0.800 (s: 0.84), Pa: 0.000 (s: 0) Exon 2 53610 53622 ( 13 n); cDNA 399 411 ( 13 n); score: 0.769 MATCH C09HBa0047I13.1+ SGN-E353206+ 0.877 425 0.842 C PGS_C09HBa0047I13.1+_SGN-E353206+ (52218 52629,53610 53622) Alignment (genomic DNA sequence = upper lines): ATCGGAGTGT CACGTTCCGA CACAATAATA TTAAAGGCAA GGAATCTTGA AGTAACTTAA 52277 |||||||||| |||||||||| ||||||| | ||||||| || |||||||| | |||||||| ATCGGAGTGT CACGTTCCGA AACAATAACA TTAAAGGAAA TAAATCTTGA ACTAACTTAA 60 TATATTTAAT CTCAAAGAAC CTATTTTCCA AATGAGAATG GTATGGAGGC ATGAGTCCTC 52337 ||||| |||| |||||||||| |||||||||| |||||| ||| || ||||| | |||||||||| TATATCTAAT CTCAAAGAAC CTATTTTCCA AATGAGTATG GTGTGGAGCC ATGAGTCCTC 120 ATAAGGGTGC TTAATGTTGT GATTAATGGT GTACCTATTA TGGTGTTGTT GTCAATGGTT 52397 || | |||| || | | | ||||| |||| | ||| || ||||||| || ||||||| AT-A-GGTG- ----TGCT-T G----ATGGT GTACATGTTA TGTTGTTGTT GTTAATGGTT 168 CATGT-TTTT GTTGCTTGCC ACCTGTTAAG TGTAGTAGTT TATTTTATAT ATTATTATTC 52456 ||||| |||| |||||||||| |||||||||| | | |||||| | ||| ||| |||||||||| CATGTGTTTT GTTGCTTGCC ACCTGTTAAG TATTGTAGTT GA-TTT-TAT ATTATTATTC 226 AATATATATT GATTTCTATT TTGAGTTGAC CGATGATACC TACTCAGTAC GTGTTCCTTG 52516 |||||||||| |||| |||| |||||||||| |||||||||| |||||||||| |||||||||| AATATATATT GATTATTATT TTGAGTTGAC CGATGATACC TACTCAGTAC GTGTTCCTTG 286 TACTGACCCC TACTTGTATT TTCTTCTCTG TTCTTTTGTG GAGTGCAGCT AGTGTATTAT 52576 |||||||||| |||||||||| |||||||||| || ||||||| ||||||| | |||||| || TACTGACCCC TACTTGTATT TTCTTCTCTG TTTTTTTGTG GAGTGCAACA AGTGTACCAT 346 CGACTTCGAC TCGCCCTCAG CTCTAGCCAG TCTTCAACAT ATCAGAGTCC AGTGTGAGCT 52636 |||| |||| ||||||||| ||||| |||| ||| || || |||||||| | || TGACTACGAC TCGCCCTCAT CTCTAACCAG TCTCCAGCAC ATCAGAGTTC AG-....... 398 ATTAATTCTA GCTCGTGCTG GATTTTCTCA TTCACATCTT GATGTCTTTG AATTTCGGAC 52696 .......... .......... .......... .......... .......... .......... 398 ATGGGCCATC TTTTTGCTTA TTTTGGTTTC TTAAATATTT TTAGACTTGA TAATTTGGAA 52756 .......... .......... .......... .......... .......... .......... 398 ATAGATGTCC TTGATGTGAT GACTATCAGA TTTTGGGATA ATAAGTATTA AGCTTTAGAA 52816 .......... .......... .......... .......... .......... .......... 398 ACTTATTTAA ATTGGTTACT TAAGTTGCTA TTTATAGTTG AATTGTTGGT ATATGTTGGG 52876 .......... .......... .......... .......... .......... .......... 398 GTTCGGATTC ATTGGTTCGC CCACCTAGGG GGTAAGTGTG GGTGTCACTC ACGACTCATT 52936 .......... .......... .......... .......... .......... .......... 398 TTGGGTCGTG ACAAACTTGG TATCAAAGCG TTAGGTTTGT TGGTCTCATC ACACAAGTAC 52996 .......... .......... .......... .......... .......... .......... 398 AAGTCTAGTA GAGTCTTGAG GAACGATATG CGTACGCCTT TACTTATCTT CGAGAGGCCA 53056 .......... .......... .......... .......... .......... .......... 398 TAGGACTTAA GGAAAACTTC ATTCATTCTT TCTTTCGTGT TATTACTTTG ATTCAATTTG 53116 .......... .......... .......... .......... .......... .......... 398 TATCTGGTGA TACAAATTGG TATCTGACCT TCTCACTCTA TTTCACAGAT GGTTAGAACT 53176 .......... .......... .......... .......... .......... .......... 398 AGAGCAACAA CTGTGCTAAC ACAAACATTG GCAAGACAGG GTGCGTCTGA GCTAATCATT 53236 .......... .......... .......... .......... .......... .......... 398 GCGGCTGTAA CTTAAGGAGG AGCAGTGGAA AGAGGCCGTG GTAGGGGTCG CAGGAGGATG 53296 .......... .......... .......... .......... .......... .......... 398 CCTACTAGAG GCAGAGGACA AACACCTGGC CCAACCAAGA ATAGAGAGTG ACTCCTCTAC 53356 .......... .......... .......... .......... .......... .......... 398 CGACTGATGA GGTAGTGAGA GAGGGTGAAG AAGGGGAAAA TGAGCAGGTT CAGGATAAGG 53416 .......... .......... .......... .......... .......... .......... 398 AAGTACCACC CAGCCTACCC AGAGATGATT AATCAGGTTC TTACTTATCT TAGCGGGTTA 53476 .......... .......... .......... .......... .......... .......... 398 TCTGATCAGG TCCAGACTAC TCCAGTGTTT TCTGCACCAG CACCTCAGGT TCAGGGAGTA 53536 .......... .......... .......... .......... .......... .......... 398 CAACATGCAG CTGTTGTGGC TCCCCGCATG GATGCATCAT TGGAAGTAGA CACGTTTCCT 53596 .......... .......... .......... .......... .......... .......... 398 CGATTGACTA CAGGGTCTAT AATAAT 53622 | ||||| || || .......... ...GATCTAT GATGAT 411 hqPGS_C09HBa0047I13.1+_SGN-E353206+ (52218 52629) ******************************************************************************** EST sequence 65 -strand 710 n (File: SGN-E392027-) 1 CAGCAAACGT GCCATCGTGT TCAACTCAAC AGTAATTCAA GCCAGTCTTA CTACATCGGA 61 AATTCAGGGT GAGCTAATGC TTCTAGCTTG GACTGGATCT TCTTCTTCAA GTCTTGATGC 121 CTTGAACTTC CGGCATGGAC TAGCTTCTTA TGTATTTTTA GCTTTTAGAC TACTCTTAGT 181 TTAGTCATTT GATCGTAGAT GTTCTTGTGG TGATGACTTC CAGATTTTGG GGAATAATAG 241 ATGTTGAATT TTAGAAGTTA ATGAATTGGT CTGTATTTAA TGAGTTTAAG TCTTCCACAT 301 TACTTTCTGT TGATATTATA TTGAAATGTT AAGGTTAGAT TGGTTGGTTC GCTCACATAG 361 GAGGGTAAGT GTGGGTGCCA GTCGCAACCC GGTTTTGGTC GTGACAAACT TGGTATCAGA 421 GCATTAGGTT CGTTGGTCTC ATCACACAAG AACGAGTCTA GTAGAGTCTT AAGGAACGGT 481 AGGGGGATGC CTTTACTTTT CCTTGAGAGG CTATAAGACT TTTGGAAAAT TCCATTCTTT 541 CTTCTTTCGT GCTATTACTT GGGTCCAATT GGTATCTAGG TGATACAAAT TGGTATCTGA 601 CCATCTTCAC TCTATTTCGC AGATGGTTAG AACTAGAGCA ACGACTACGC CAGCATCAAC 661 ACCAGCACCG GCGGGACAGG GTGCGACTGA GCCAGCCACT GGGGCTGTGG Predicted gene structure (within gDNA segment 48370 to 54464): Exon 1 52562 53188 ( 627 n); cDNA 1 646 ( 646 n); score: 0.681 MATCH C09HBa0047I13.1+ SGN-E392027- 0.681 627 0.883 C PGS_C09HBa0047I13.1+_SGN-E392027- (52562 53188) Alignment (genomic DNA sequence = upper lines): CAGCTAGTGT ATTATCGACT TCGACTCGCC CTCAGCTCTA GCCAGTCTT- CAACATATCA 52620 |||| | || |||| | || |||| | | || | ||||||||| | |||| | CAGCAAACGT GCCATCGTGT TCAACTCAAC AGTAATTCAA GCCAGTCTTA CTACATCGGA 60 GAGTCCAGTG TGAGCTATTA ATTCTAGCTC GTGCTGGATT TTCTCATTCA CATCTTGATG 52680 | | ||| | ||||||| | |||||||| | |||||| |||| |||| |||||||| -AATTCAGGG TGAGCTAATG CTTCTAGCTT GGACTGGATC TTCTTCTTCA AGTCTTGATG 119 TCTTTGAATT TCGGACATGG GCCATCTTTT TGCTTA-TTT TGGTTTCTTA AATATTTTTA 52739 | ||||| | || | ||||| | | ||| | | || ||| | | || | | || | ||| -CCTTGAACT TCCGGCATGG ACTAGCTTCT TATGTATTTT TAGCTTTTAG ACTACTCTTA 178 GACTTGATAA TTTGGAAATA GATGTCCTTG ATGTGATGAC TATCAGATTT T-GGG-ATAA 52797 | || | | |||| || ||||| |||| |||||||| | ||||||| | ||| |||| G-TTTAGTCA TTTGATCGTA GATGTTCTTG TGGTGATGAC TTCCAGATTT TGGGGAATAA 237 TAAGTATTAA GCTTTAGAA- --ACT-TATT ----T-AAAT TGGTTA-CTT AAG--TTGC- 52844 || | || | ||||||| | | ||| | | | | | | || ||| || | TAGATGTTGA ATTTTAGAAG TTAATGAATT GGTCTGTATT TAATGAGTTT AAGTCTTCCA 297 TATT--TATA -GTTGA-ATT GTTGGTATAT GTTGGGGTTC GGATTCATTG GTTCGCCCAC 52900 ||| | | ||||| ||| | | || ||| |||| |||| ||| |||||| ||| CATTACTTTC TGTTGATATT ATATTGAAAT GTTAAGGTT- AGATTGGTTG GTTCGCTCAC 356 CTAGG-GGGT AAGTGTGGGT GTCACTCACG ACTCATTTTG GGTCGTGACA AACTTGGTAT 52959 |||| |||| |||||||||| | || || | || | ||| |||||||||| |||||||||| ATAGGAGGGT AAGTGTGGGT GCCAGTCGCA ACCCGGTTTT GGTCGTGACA AACTTGGTAT 416 CAAAGCGTTA GGTTTGTTGG TCTCATCACA CAAGTACAAG TCTAGTAGAG TCTTGAGGAA 53019 || ||| ||| |||| ||||| |||||||||| |||| || || |||||||||| |||| ||||| CAGAGCATTA GGTTCGTTGG TCTCATCACA CAAGAACGAG TCTAGTAGAG TCTTAAGGAA 476 CGATATGCGT ACGCCTTTAC TTATCTTCGA GAGGCCATAG GACTTAAGGA AAACTTCATT 53079 || || | | | |||||||| || || | || ||||| ||| ||||| ||| ||| | |||| CGGTAGGGGG ATGCCTTTAC TTTTCCTTGA GAGGCTATAA GACTTTTGGA AAATTCCATT 536 CATTCTTTCT TTCGTGTTAT TACTTTGATT CAATTTGTAT CT-GGTGATA CAAATTGGTA 53138 | ||| |||| |||||| ||| ||||| | | ||||| |||| || ||||||| |||||||||| CTTTC-TTCT TTCGTGCTAT TACTTGGGTC CAATTGGTAT CTAGGTGATA CAAATTGGTA 595 TCTGACCTTC -TCACTCTAT TTCACAGATG GTTAGAACTA GAGCAACAAC T 53188 ||||||| || ||||||||| ||| |||||| |||||||||| ||||||| || | TCTGACCATC TTCACTCTAT TTCGCAGATG GTTAGAACTA GAGCAACGAC T 646 hqPGS_C09HBa0047I13.1+_SGN-E392027- (52562 53188) ******************************************************************************** EST sequence 23 +strand 307 n (File: SGN-E345139+) 1 CATCGAAGGC AGCAACCTCA GCGAGTGTAC CTATGACTTC TGATTTCCCT TAGCTCTAGC 61 CAGCCTCCCG CATATCAAGT TACAGGGTGA GCTATCCGTT CAAGCTCGTG TTGGATTCTC 121 TCGGTCATGA CATGATGTCC TATAGTTTCG GACACATACT ATTTTATTCT TTATTTTAGT 181 GTATTCGATA TTCTTAGACT TAGTAATGGA GATTAGATGT CTTTGATGTG ATGACTATCA 241 GATTTTTGGA TAATAAGTAT TAAACTTTAG AAACTTATTT AAATTGGTTA CTTAGTAAAA 301 AAAAAAA Predicted gene structure (within gDNA segment 49947 to 53578): Exon 1 52567 52837 ( 271 n); cDNA 24 293 ( 270 n); score: 0.775 PPA cDNA 297 307 MATCH C09HBa0047I13.1+ SGN-E345139+ 0.775 271 0.883 C PGS_C09HBa0047I13.1+_SGN-E345139+ (52567 52837) Alignment (genomic DNA sequence = upper lines): AGTGTATTAT CGACTTCGAC TCGCCCTCAG CTCTAGCCAG TCTTCAACAT ATCAGAGTCC 52626 |||||| |||||| | |||| || |||||||||| || | ||| |||| | | AGTGTACCTA TGACTTCTGA TTTCCCTTAG CTCTAGCCAG CCTCCCGCAT ATCAAGTTAC 83 AGTGTGAGCT ATTAATTCTA GCTCGTGCTG GATTTTCTCA TTCACATCTT GATGTCTTTG 52686 || ||||||| || ||| | ||||||| || |||| |||| ||| | | |||||| | AGGGTGAGCT ATCCGTTCAA GCTCGTGTTG GATTCTCTCG GTCATGACAT GATGTCCTAT 143 AATTTCGGAC ATGGGCCATC TTTTTGCTTA TTTTGGTTTC TTAAATATTT TTAGACTTGA 52746 | |||||||| | | || || || ||| |||| || | || ||||| |||||||| AGTTTCGGAC ACATACTATT TTATTCTTTA TTTTAGTGTA TTCGATATTC TTAGACTTAG 203 TAATTTGGAA ATAGATGTCC TTGATGTGAT GACTATCAGA TTTTGGGATA ATAAGTATTA 52806 ||| | | | |||||||| |||||||||| |||||||||| |||| ||||| |||||||||| TAA-TGGAGA TTAGATGTCT TTGATGTGAT GACTATCAGA TTTTTGGATA ATAAGTATTA 262 AGCTTTAGAA ACTTATTTAA ATTGGTTACT T 52837 | |||||||| |||||||||| |||||||||| | AACTTTAGAA ACTTATTTAA ATTGGTTACT T 293 hqPGS_C09HBa0047I13.1+_SGN-E345139+ (52567 52837) ******************************************************************************** EST sequence 54 -strand 694 n (File: SGN-E353359-) 1 GCAAGGTAGG ATGTAGGTCA ATGCATATGA GGCTAAGTTT CGTGCACTAT CCAGATATGC 61 CACTCAACTT TGTTTCAGTC CACAAGAGAG GATTCGTCGT TTTGTGAAAG GGTTGAGGTC 121 AGAGTTGCGG ATTTCAGCGT TACAGGTAGC GGCTACGGCA AAATCCTTGC AAGAAATGGT 181 TGACTTCGAT GTAATTCTGG GTATGACTTG GCTTTCTCCA AATTTTGCAA TCTTGGATTG 241 TAATGCTAAA ACCGTGACGT TAGCCAAGCC TGGGACAGAT CTGTTAGTGT AGGAGGGTGA 301 CTACACTTCC AATCCGGTGC GTATCATCTC CTTTCTTCGT GCTAAGAAAA TGGTTAGTAA 361 AGGGTGTTTA GCTTTCTTGG CACATCTCAA GGATAACACT ACCCAAGTAC CTTCGATTGA 421 CTCAGTTTCA GTAGTTCGTG AGTTTATGGA TGTGTTCCCT GCAGATCATC CTGGTATGCC 481 ACCGGATAGG GATATTGACT TCTGTATTGA TCTCGAACCG GGCACACGCC CCATTTTTAT 541 ACCCCCTTAT AGAATGGCTC CCGCAGAGTT AAGAGAGTTA AAGGCACAAC TTCAAGAGTT 601 ATTGAACAAA GGCTTCATTA GACCAAGTGC ATCTCCTTGG GGTGCTCCGG TTTTGTTGTA 661 AAGATCGGCA GTTTTTGAAT GTGCATAGAC TACA Predicted gene structure (within gDNA segment 52430 to 59742): Exon 1 53944 54110 ( 167 n); cDNA 1 167 ( 167 n); score: 0.775 Intron 1 54111 54889 ( 779 n); Pd: 0.000 (s: 0.72), Pa: 0.000 (s: 0.90) Exon 2 54890 55141 ( 252 n); cDNA 168 419 ( 252 n); score: 0.841 Intron 2 55142 56309 (1168 n); Pd: 0.000 (s: 0.82), Pa: 0.683 (s: 0.76) Exon 3 56310 56591 ( 282 n); cDNA 420 694 ( 275 n); score: 0.796 MATCH C09HBa0047I13.1+ SGN-E353359- 0.807 701 1.010 C PGS_C09HBa0047I13.1+_SGN-E353359- (53944 54110,54890 55141,56310 56591) Alignment (genomic DNA sequence = upper lines): GCAAGGAA-G ATGTCTTTTA TTACTTATGA GGCCAAATTT CGTGCACTAT CCAGGTATGC 54002 |||||| | | |||| | | | | ||||| ||| || ||| |||||||||| |||| ||||| GCAAGGTAGG ATGTAGGTCA ATGCATATGA GGCTAAGTTT CGTGCACTAT CCAGATATGC 60 CACTAATCTT TGCTTCAATC CACAAGAGCG GATTTGGCTC TTTGTGAAAG GATTGAGGTT 54062 |||| | ||| || |||| || |||||||| | |||| | | |||||||||| | ||||||| CACTCAACTT TGTTTCAGTC CACAAGAGAG GATTCGTCGT TTTGTGAAAG GGTTGAGGTC 120 AGATTTTGCA TATTCCATCC TTATAGGTAG CTTCTGCAGC CAAATCCTAT TAGCAATTGG 54122 ||| |||| ||| || | ||| |||||| | || | || ||||||| AGA-GTTGCG GATTTCAGCG TTACAGGTAG CGGCTACGGC AAAATCCT.. .......... 167 TTGATTTTGT GATAGAGGTA GAGGGGGTGA ATCCAGATGA CTTCACCACA GCATCTACAT 54182 .......... .......... .......... .......... .......... .......... 167 TTAAGAAGTT TCGTAAGGGA GGTGAGTTTA GTGGTTCTTA CTCCAGAGGG CAGAGTTCAT 54242 .......... .......... .......... .......... .......... .......... 167 GAGGTTATCC AGCCCGTGAG ATTCAGTCTT CATTGCAGGC TTCAGGTGGG GGTCCGTCGT 54302 .......... .......... .......... .......... .......... .......... 167 AGACCAGTCA GCCTTTTTCT GAGTTAGAGG TTATCTCCAG ACTTCGTCAT TTTAACAAAG 54362 .......... .......... .......... .......... .......... .......... 167 ACCTATACTT GACTCCAGGA CTTGTTATGG ATGTGGAGAG GTTGTACATA TTAGGAAATA 54422 .......... .......... .......... .......... .......... .......... 167 CTATTCAAAA CAGAGTTACA GACCCCCAAT AGTTATAGGT AGAGGTGGTC TTGGTAGAGG 54482 .......... .......... .......... .......... .......... .......... 167 CCGCCATTCT AGAAGACGTG GTGGCTAAGG TAATGGCAAC CACCAGTTCA CTCGGGGTGG 54542 .......... .......... .......... .......... .......... .......... 167 CGGGCAGGTT GGAACTACTG CAGCACAGCT TGGTAGGAGT AATGGACAGA CAGGTGATAA 54602 .......... .......... .......... .......... .......... .......... 167 GACCCATTGT TATGCTTTCC CGAGGAGGTC TAAAGTAGAG ACATCTGATG CTGTTATCAC 54662 .......... .......... .......... .......... .......... .......... 167 AAGTACTTTT TTGGTCTGTG ATTGCATGAC TTTTGTATTG TTTGATCCTG GATACACATT 54722 .......... .......... .......... .......... .......... .......... 167 TTCATATGAA TCTTCCTCAT TTGCTACTGG TCTTGATTTA TATTGTGATT TGCTTGACAT 54782 .......... .......... .......... .......... .......... .......... 167 GCCTATTCAT GTCTCTACTC ATGTGGGTGA GTCTGTGATA GTTGAGAAGA TGTAACGGTC 54842 .......... .......... .......... .......... .......... .......... 167 TTGCCTTGTG ATTTTTGTGG GGAGCAATAC TTATGTAGAT TTGATTATTC TAGATATGGT 54902 | | ||| ||||| .......... .......... .......... .......... .......TGC AAGAAATGGT 180 TGATTTTGAT GTAATTCTGG GTATGACTTG GCTTTCTCCA AATTTTGAAA TCTTAGATTG 54962 ||| || ||| |||||||||| |||||||||| |||||||||| ||||||| || |||| ||||| TGACTTCGAT GTAATTCTGG GTATGACTTG GCTTTCTCCA AATTTTGCAA TCTTGGATTG 240 TAATGCTAAA ACTGTTACAT TGGCCAAGCC TGGGACAGAT TCGCTAGTAT AGGAGGGTGA 55022 |||||||||| || || || | | |||||||| |||||||||| | |||| | |||||||||| TAATGCTAAA ACCGTGACGT TAGCCAAGCC TGGGACAGAT CTGTTAGTGT AGGAGGGTGA 300 CTATATTTCC ACTCCAGTTC GTATTATTTC TTGTCTTCGT GCTAAAAGGA TGGTGAGTAA 55082 ||| | |||| | ||| || | |||| || || | ||||||| ||||| | | |||| ||||| CTACACTTCC AATCCGGTGC GTATCATCTC CTTTCTTCGT GCTAAGAAAA TGGTTAGTAA 360 GGGTTTTTTA GATTTCTTGT CACATATCAA GGATGATACT TCCAAAGTAT CTTTGATTGA 55142 || | |||| | ||||||| ||||| |||| |||| | ||| || ||||| ||| ||||| AGGGTGTTTA GCTTTCTTGG CACATCTCAA GGATAACACT ACCCAAGTAC CTTCGATTG. 419 GTCTCTTTTG ATAGTCCGTG AGATGATACA CAGCTTTGCT TCAGTCCACA AGAGCGGATT 55202 .......... .......... .......... .......... .......... .......... 419 TATTGCTTTC TGAAAGGATT GAGGTTAGGT TTTGCAAATT CCAGCCTTAC AGGTAACTGC 55262 .......... .......... .......... .......... .......... .......... 419 TGCAGCAAAA TTGTTTCAGG AATTGGTTGG TTTTGTGATA GAGGTAAAGG GGGTAAAGCC 55322 .......... .......... .......... .......... .......... .......... 419 AGATGACTTC GCCACAGCAT CGACATTTAA GAAGTTTTGT AAGGGAGGTG AGTTTAGTGA 55382 .......... .......... .......... .......... .......... .......... 419 TTCTTACTCA AGAGGGGAGT TCATGAGGTT TTCCAGCCCT TGAGATTCAT TCTTCATTGC 55442 .......... .......... .......... .......... .......... .......... 419 AGGCTTCAGG TGGGGGTTCG TCGCAGACCT GACAGTTTAA CAGAGACCTA TACTTGACTC 55502 .......... .......... .......... .......... .......... .......... 419 CAGGACTTGT TATGGATGTG GAGAGGTTGG ACGTATTAGG AAATACTGTC CAAAACAGAG 55562 .......... .......... .......... .......... .......... .......... 419 TTACAGACCC CTAATAGGTA GAGGTAGAGG TGGTCTTGGT AGAGGCCGCC ATTCTGGAGG 55622 .......... .......... .......... .......... .......... .......... 419 ACGTGGTGGC TAAGGTAATG GCAGTCACTA ATTCACTCGG GTTGGCAGGC AAGTTGGAAC 55682 .......... .......... .......... .......... .......... .......... 419 TATTGCAGCG CAACTTGGTG GGGCAGTGGA CAGATAGGTG ATAGGGCCCA TGGTTATGCT 55742 .......... .......... .......... .......... .......... .......... 419 TTCCCCGAGA GGTCTGAAGT AGAGACATGT GATGTTGTTA TCACATGTAC TCTTTTGGTT 55802 .......... .......... .......... .......... .......... .......... 419 TGTGATTGCA TGACTTTTGT ATTGTTTGAT CCACGATACA CATTTTCATA TGTATCTTCC 55862 .......... .......... .......... .......... .......... .......... 419 TCATTTGCTA CTGGTCTTGA TTTATATTGT GATTTTCTTG ACATACCTAT TCGTGTCTCT 55922 .......... .......... .......... .......... .......... .......... 419 ACTACTGTGG GTGAGTCTGT GATAGTTGTG AAGGTGTATA GGTCTTGCCT TGTGACTTTT 55982 .......... .......... .......... .......... .......... .......... 419 GTGGGAAGCA ATACTTATGT AGATTTTATT ATTCTAGAGA TGGTTGTTTT TGATGTAATT 56042 .......... .......... .......... .......... .......... .......... 419 CAGGGTATGA CTTGGCTTTC TCCAAATTTT GCAATCATAG ATTGTAATGC TAAACTGTGT 56102 .......... .......... .......... .......... .......... .......... 419 TATTAGCCAA ACCTGGGACA GATTCGCTAG TATGGGAGGG TGACTATATT TCCACTCCCG 56162 .......... .......... .......... .......... .......... .......... 419 TTCGTATTAT CTCTTGTCTT TGTGCTAAGA GGATGGTGAG TAAGGTTTGT TTATATTTGT 56222 .......... .......... .......... .......... .......... .......... 419 TGGCACATCT CACGGATGAT ACTTCCAAAG TACCTTCGAT TGAGTCTGTT TCGATAGTCC 56282 .......... .......... .......... .......... .......... .......... 419 GTGAGTTTCT AGATGTGTTT TCTGCAGACC TCTGTTTCGA TAGTCTGTGA GTTTCTAGAT 56342 | | || ||||| |||| |||| |||| | ||| .......... .......... .......A-C TCAGTTTCAG TAGTTCGTGA GTTTATGGAT 451 GTTTTTCCTG CAGACCTTCC TAGTATGCCA CTGGATAGGG ATATTGATTT TTGTATTGAT 56402 || || |||| |||| | ||| | |||||||| | |||||||| ||||||| || ||||||||| GTGTTCCCTG CAGATCATCC TGGTATGCCA CCGGATAGGG ATATTGACTT CTGTATTGAT 511 GTGGAA-CGG TTACTCGCCC CATTTCCATT CCCCCTTATA GAATGGCTCC AGCTGAGTTG 56461 | ||| ||| || ||||| ||||| || |||||||||| |||||||||| || ||||| CTCGAACCGG GCACACGCCC CATTTTTATA CCCCCTTATA GAATGGCTCC CGCAGAGTTA 571 AGGGAGTTAA AGGCCCAACT TCAGGAGTTG TTAGGTAAAG GTTTTATTAG ACCGAGTGCA 56521 || ||||||| |||| ||||| ||| ||||| || |||| | || ||||| ||| |||||| AGAGAGTTAA AGGCACAACT TCAAGAGTTA TTGAACAAAG GCTTCATTAG ACCAAGTGCA 631 GCACCTTGGG GTGCTCTGGT TTTATTTGTG AAGAAGAAAG ATGAAAGTTT TCGGATGTGC 56581 | ||||||| |||||| ||| ||| |||| | |||| | | ||||| | | |||||| TCTCCTTGGG GTGCTCCGGT TTT-GTTGT- -A-AAGATCG --G-CAGTTT TTGAATGTGC 684 ATAGAATACA 56591 ||||| |||| ATAGACTACA 694 hqPGS_C09HBa0047I13.1+_SGN-E353359- (53944 54110,54890 55141,56310 56591) ******************************************************************************** EST sequence 47 -strand 559 n (File: SGN-E244046-) 1 GGTGAGTTTA ATGGTGCTTA CACTAGAGGA CAGGGTTCGG GAAGTTACTC AGTCCGACCA 61 ATTCAGTCTT CACTACAGAC TGTAGTTGGG GGTCCACCTT CGACCGGTCA ACACTTCTCT 121 GAGAGACTTA TGCATGAACC CAGAGAGTGC TATGGGTGTG GGGAGATTGG ACATATTAAG 181 AGATATTGTC CAAAACAGAG TTACAGACCT CCAAAGGTTA GAGGTAGAGG TGGTCATGGC 241 AGAGTCCGTT ATTCTGGAGG ACGTGGCGGT CGAGGAAATG GTGGTCACCA AAACGGCCGA 301 GGTGATGGGC AAACTGGAGC CACTACATCA CAACATGGTA GGGGCAACAG ACATAAGAAT 361 GATAGGGCCC ATTGTTACGC TTTCCCTGGG CGGTCTGAAG CGGAGGAATC TGATGTTGTC 421 ATCACAGGTA ATCTTTTGGT TTGTGATTGC ATGGCTTCTG TATTGTTTGA TCCTGGATCC 481 ACATTTTCTT ATGTATCTTC CTCATTTGCT AATGGTCTAA CTTTACATTG TGAATTACTT 541 GATATGCCTA TTCGTGTTT Predicted gene structure (within gDNA segment 53079 to 59158): Exon 1 54203 54325 ( 123 n); cDNA 1 123 ( 123 n); score: 0.748 Intron 1 54326 55485 (1160 n); Pd: 0.000 (s: 0.72), Pa: 0.000 (s: 0.72) Exon 2 55486 55918 ( 433 n); cDNA 124 557 ( 434 n); score: 0.786 MATCH C09HBa0047I13.1+ SGN-E244046- 0.778 556 0.995 C PGS_C09HBa0047I13.1+_SGN-E244046- (54203 54325,55486 55918) Alignment (genomic DNA sequence = upper lines): GGTGAGTTTA GTGGTTCTTA CTCCAGAGGG CAGAGTTCAT GAGGTTATCC AGCCCGTGAG 54262 |||||||||| |||| |||| | | ||||| ||| |||| || |||| | || ||| GGTGAGTTTA ATGGTGCTTA CACTAGAGGA CAGGGTTCGG GAAGTTACTC AGTCCGACCA 60 ATTCAGTCTT CATTGCAGGC TTCAGGTGGG GGTCCGTCGT AGACCAGTCA GCCTTTTTCT 54322 |||||||||| || | ||| | | || |||| ||||| | | |||| |||| | || ||| ATTCAGTCTT CACTACAGAC TGTAGTTGGG GGTCCACCTT CGACCGGTCA ACACTTCTCT 120 GAGTTAGAGG TTATCTCCAG ACTTCGTCAT TTTAACAAAG ACCTATACTT GACTCCAGGA 54382 ||| GAG....... .......... .......... .......... .......... .......... 123 CTTGTTATGG ATGTGGAGAG GTTGTACATA TTAGGAAATA CTATTCAAAA CAGAGTTACA 54442 .......... .......... .......... .......... .......... .......... 123 GACCCCCAAT AGTTATAGGT AGAGGTGGTC TTGGTAGAGG CCGCCATTCT AGAAGACGTG 54502 .......... .......... .......... .......... .......... .......... 123 GTGGCTAAGG TAATGGCAAC CACCAGTTCA CTCGGGGTGG CGGGCAGGTT GGAACTACTG 54562 .......... .......... .......... .......... .......... .......... 123 CAGCACAGCT TGGTAGGAGT AATGGACAGA CAGGTGATAA GACCCATTGT TATGCTTTCC 54622 .......... .......... .......... .......... .......... .......... 123 CGAGGAGGTC TAAAGTAGAG ACATCTGATG CTGTTATCAC AAGTACTTTT TTGGTCTGTG 54682 .......... .......... .......... .......... .......... .......... 123 ATTGCATGAC TTTTGTATTG TTTGATCCTG GATACACATT TTCATATGAA TCTTCCTCAT 54742 .......... .......... .......... .......... .......... .......... 123 TTGCTACTGG TCTTGATTTA TATTGTGATT TGCTTGACAT GCCTATTCAT GTCTCTACTC 54802 .......... .......... .......... .......... .......... .......... 123 ATGTGGGTGA GTCTGTGATA GTTGAGAAGA TGTAACGGTC TTGCCTTGTG ATTTTTGTGG 54862 .......... .......... .......... .......... .......... .......... 123 GGAGCAATAC TTATGTAGAT TTGATTATTC TAGATATGGT TGATTTTGAT GTAATTCTGG 54922 .......... .......... .......... .......... .......... .......... 123 GTATGACTTG GCTTTCTCCA AATTTTGAAA TCTTAGATTG TAATGCTAAA ACTGTTACAT 54982 .......... .......... .......... .......... .......... .......... 123 TGGCCAAGCC TGGGACAGAT TCGCTAGTAT AGGAGGGTGA CTATATTTCC ACTCCAGTTC 55042 .......... .......... .......... .......... .......... .......... 123 GTATTATTTC TTGTCTTCGT GCTAAAAGGA TGGTGAGTAA GGGTTTTTTA GATTTCTTGT 55102 .......... .......... .......... .......... .......... .......... 123 CACATATCAA GGATGATACT TCCAAAGTAT CTTTGATTGA GTCTCTTTTG ATAGTCCGTG 55162 .......... .......... .......... .......... .......... .......... 123 AGATGATACA CAGCTTTGCT TCAGTCCACA AGAGCGGATT TATTGCTTTC TGAAAGGATT 55222 .......... .......... .......... .......... .......... .......... 123 GAGGTTAGGT TTTGCAAATT CCAGCCTTAC AGGTAACTGC TGCAGCAAAA TTGTTTCAGG 55282 .......... .......... .......... .......... .......... .......... 123 AATTGGTTGG TTTTGTGATA GAGGTAAAGG GGGTAAAGCC AGATGACTTC GCCACAGCAT 55342 .......... .......... .......... .......... .......... .......... 123 CGACATTTAA GAAGTTTTGT AAGGGAGGTG AGTTTAGTGA TTCTTACTCA AGAGGGGAGT 55402 .......... .......... .......... .......... .......... .......... 123 TCATGAGGTT TTCCAGCCCT TGAGATTCAT TCTTCATTGC AGGCTTCAGG TGGGGGTTCG 55462 .......... .......... .......... .......... .......... .......... 123 TCGCAGACCT GACAGTTTAA CAGAGACCTA TACTTGACTC CAGGACTTGT TATGGATGTG 55522 |||| || | | ||| | ||| || ||||| |||| .......... .......... ...AGACTTA TGCATGAACC CAGAGAGTGC TATGGGTGTG 160 GAGAGGTTGG ACGTATTAGG AAATACTGTC CAAAACAGAG TTACAGACCC CTAATAGGTA 55582 | ||| |||| || ||||| | | ||| |||| |||||||||| ||||||||| | || | || GGGAGATTGG ACATATTAAG AGATATTGTC CAAAACAGAG TTACAGACCT CCAAAGGTTA 220 GAGGTAGAGG TGGTCTTGGT AGAGGCCGCC ATTCTGGAGG ACGTGGTGGC TAAGGTAATG 55642 |||||||||| ||||| ||| |||| ||| |||||||||| |||||| || ||| |||| GAGGTAGAGG TGGTCATGGC AGAGTCCGTT ATTCTGGAGG ACGTGGCGGT CGAGGAAATG 280 GCAGTCACTA ATTCACTCGG GTTGGCAGGC AAGTTGGAAC TATTGCAGCG CAACTTGGT- 55701 | ||||| | | | || | || ||| || |||| | | | || | |||| |||| GTGGTCACCA AAACGGCCGA GGTGATGGGC AAACTGGAGC CACTACATCA CAACATGGTA 340 GGGGCAGTGG ACAGATAGGT GATAGGGCCC ATGGTTATGC TTTCCCCGAG AGGTCTGAAG 55761 |||||| | ||| | | |||||||||| || |||| || |||||| | | ||||||||| GGGGCAACAG ACATAAGAAT GATAGGGCCC ATTGTTACGC TTTCCCTGGG CGGTCTGAAG 400 TAGAGACATG TGATGTTGTT ATCACATGTA CTCTTTTGGT TTGTGATTGC ATGACTTTTG 55821 ||| || ||||||||| |||||| ||| ||||||||| |||||||||| ||| ||| || CGGAGGAATC TGATGTTGTC ATCACAGGTA ATCTTTTGGT TTGTGATTGC ATGGCTTCTG 460 TATTGTTTGA TCCACGATAC ACATTTTCAT ATGTATCTTC CTCATTTGCT ACTGGTCTTG 55881 |||||||||| ||| ||| | |||||||| | |||||||||| |||||||||| | |||||| TATTGTTTGA TCCTGGATCC ACATTTTCTT ATGTATCTTC CTCATTTGCT AATGGTCTAA 520 ATTTATATTG TGATTTTCTT GACATACCTA TTCGTGT 55918 |||| |||| ||| || ||| || || |||| ||||||| CTTTACATTG TGAATTACTT GATATGCCTA TTCGTGT 557 hqPGS_C09HBa0047I13.1+_SGN-E244046- (54203 54325,55486 55918) ******************************************************************************** EST sequence 58 -strand 543 n (File: SGN-E355026-) 1 GCAGAGGCGT CTGATGCTGT TATCACAGGT AATCTCTTGG TTTGTGATTG CATGGCATCT 61 GTATTATTTG ACCCTGGCTC CACGTTTTCA TATGTATCTT CATCATTTGC TAATGGTCTA 121 AAATTGCATT GTGAATTACT TGACATGCCT ATTCGTGTTT CTACTCCGGT GGGTGAGTCT 181 GTGATAGTTG AAAAGGTACA TAGGTCTTGT TTGGTGAATT TCGTGGGGAG CAACACTTAT 241 CTAGATTTGG TTACTTTAGA AATGGGTGAC TTTGATGTAA TTCTGGGTAT GACTTGGCTT 301 TCTCCCAATT TTGCGATCTT GGATTGTAAT GCTAAAACGG TGACGTTAGC CAAGCCTGGG 361 ACAGATCCGT TAGTGTGGGA GGGTGACTAC ACTTCCAATC CGGTGCGTAT TATCTCCTTT 421 CTTTGTGCTC AGAAGATGGT TAGTAAGGGT TGTCTATCCT TCTTGGCACA TCTCAAGGAT 481 GACACTATCC AAGTACCCTC AATTGAATTA GTTTTGGTAG TTTGAGAATT TTTGGATGTG 541 TTC Predicted gene structure (within gDNA segment 52785 to 57372): Exon 1 54639 55000 ( 362 n); cDNA 3 364 ( 362 n); score: 0.845 Intron 1 55001 56123 (1123 n); Pd: 0.000 (s: 0.88), Pa: 0.430 (s: 0.84) Exon 2 56124 56301 ( 178 n); cDNA 365 542 ( 178 n); score: 0.798 MATCH C09HBa0047I13.1+ SGN-E355026- 0.830 540 0.994 C PGS_C09HBa0047I13.1+_SGN-E355026- (54639 55000,56124 56301) Alignment (genomic DNA sequence = upper lines): AGAGACATCT GATGCTGTTA TCACAAGTAC TTTTTTGGTC TGTGATTGCA TGACTTTTGT 54698 |||| | ||| |||||||||| ||||| ||| | | ||||| |||||||||| || | | ||| AGAGGCGTCT GATGCTGTTA TCACAGGTAA TCTCTTGGTT TGTGATTGCA TGGCATCTGT 62 ATTGTTTGAT CCTGGATACA CATTTTCATA TGAATCTTCC TCATTTGCTA CTGGTCTTGA 54758 ||| ||||| ||||| | || | |||||||| || |||||| |||||||||| |||||| | ATTATTTGAC CCTGGCTCCA CGTTTTCATA TGTATCTTCA TCATTTGCTA ATGGTCTAAA 122 TTTATATTGT GATTTGCTTG ACATGCCTAT TCATGTCTCT ACTCATGTGG GTGAGTCTGT 54818 || ||||| || || |||| |||||||||| || ||| ||| |||| |||| |||||||||| ATTGCATTGT GAATTACTTG ACATGCCTAT TCGTGTTTCT ACTCCGGTGG GTGAGTCTGT 182 GATAGTTGAG AAGATGTAAC GGTCTTGCCT TGTGATTTTT GTGGGGAGCA ATACTTATGT 54878 ||||||||| ||| | | ||||||| | |||| ||| |||||||||| | |||||| | GATAGTTGAA AAGGTACATA GGTCTTGTTT GGTGAATTTC GTGGGGAGCA ACACTTATCT 242 AGATTTGATT ATTCTAGATA TGGTTGATTT TGATGTAATT CTGGGTATGA CTTGGCTTTC 54938 ||||||| || | | |||| | ||| ||| || |||||||||| |||||||||| |||||||||| AGATTTGGTT ACTTTAGAAA TGGGTGACTT TGATGTAATT CTGGGTATGA CTTGGCTTTC 302 TCCAAATTTT GAAATCTTAG ATTGTAATGC TAAAACTGTT ACATTGGCCA AGCCTGGGAC 54998 ||| |||||| | ||||| | |||||||||| |||||| || || || |||| |||||||||| TCCCAATTTT GCGATCTTGG ATTGTAATGC TAAAACGGTG ACGTTAGCCA AGCCTGGGAC 362 AGATTCGCTA GTATAGGAGG GTGACTATAT TTCCACTCCA GTTCGTATTA TTTCTTGTCT 55058 || AG........ .......... .......... .......... .......... .......... 364 TCGTGCTAAA AGGATGGTGA GTAAGGGTTT TTTAGATTTC TTGTCACATA TCAAGGATGA 55118 .......... .......... .......... .......... .......... .......... 364 TACTTCCAAA GTATCTTTGA TTGAGTCTCT TTTGATAGTC CGTGAGATGA TACACAGCTT 55178 .......... .......... .......... .......... .......... .......... 364 TGCTTCAGTC CACAAGAGCG GATTTATTGC TTTCTGAAAG GATTGAGGTT AGGTTTTGCA 55238 .......... .......... .......... .......... .......... .......... 364 AATTCCAGCC TTACAGGTAA CTGCTGCAGC AAAATTGTTT CAGGAATTGG TTGGTTTTGT 55298 .......... .......... .......... .......... .......... .......... 364 GATAGAGGTA AAGGGGGTAA AGCCAGATGA CTTCGCCACA GCATCGACAT TTAAGAAGTT 55358 .......... .......... .......... .......... .......... .......... 364 TTGTAAGGGA GGTGAGTTTA GTGATTCTTA CTCAAGAGGG GAGTTCATGA GGTTTTCCAG 55418 .......... .......... .......... .......... .......... .......... 364 CCCTTGAGAT TCATTCTTCA TTGCAGGCTT CAGGTGGGGG TTCGTCGCAG ACCTGACAGT 55478 .......... .......... .......... .......... .......... .......... 364 TTAACAGAGA CCTATACTTG ACTCCAGGAC TTGTTATGGA TGTGGAGAGG TTGGACGTAT 55538 .......... .......... .......... .......... .......... .......... 364 TAGGAAATAC TGTCCAAAAC AGAGTTACAG ACCCCTAATA GGTAGAGGTA GAGGTGGTCT 55598 .......... .......... .......... .......... .......... .......... 364 TGGTAGAGGC CGCCATTCTG GAGGACGTGG TGGCTAAGGT AATGGCAGTC ACTAATTCAC 55658 .......... .......... .......... .......... .......... .......... 364 TCGGGTTGGC AGGCAAGTTG GAACTATTGC AGCGCAACTT GGTGGGGCAG TGGACAGATA 55718 .......... .......... .......... .......... .......... .......... 364 GGTGATAGGG CCCATGGTTA TGCTTTCCCC GAGAGGTCTG AAGTAGAGAC ATGTGATGTT 55778 .......... .......... .......... .......... .......... .......... 364 GTTATCACAT GTACTCTTTT GGTTTGTGAT TGCATGACTT TTGTATTGTT TGATCCACGA 55838 .......... .......... .......... .......... .......... .......... 364 TACACATTTT CATATGTATC TTCCTCATTT GCTACTGGTC TTGATTTATA TTGTGATTTT 55898 .......... .......... .......... .......... .......... .......... 364 CTTGACATAC CTATTCGTGT CTCTACTACT GTGGGTGAGT CTGTGATAGT TGTGAAGGTG 55958 .......... .......... .......... .......... .......... .......... 364 TATAGGTCTT GCCTTGTGAC TTTTGTGGGA AGCAATACTT ATGTAGATTT TATTATTCTA 56018 .......... .......... .......... .......... .......... .......... 364 GAGATGGTTG TTTTTGATGT AATTCAGGGT ATGACTTGGC TTTCTCCAAA TTTTGCAATC 56078 .......... .......... .......... .......... .......... .......... 364 ATAGATTGTA ATGCTAAACT GTGTTATTAG CCAAACCTGG GACAGATTCG CTAGTATGGG 56138 || || |||| |||| .......... .......... .......... .......... .....ATCCG TTAGTGTGGG 379 AGGGTGACTA TATTTCCACT CCCGTTCGTA TTATCTCTTG TCTTTGTGCT AAGAGGATGG 56198 |||||||||| | ||||| | || || |||| ||||||| | |||||||||| ||| ||||| AGGGTGACTA CACTTCCAAT CCGGTGCGTA TTATCTCCTT TCTTTGTGCT CAGAAGATGG 439 TGAGTAAGGT TTGTTTATAT TTGTTGGCAC ATCTCACGGA TGATACTTCC AAAGTACCTT 56258 | ||||||| |||| ||| || ||||||| |||||| ||| ||| ||| | ||||||| | TTAGTAAGGG TTGTCTATCC TTCTTGGCAC ATCTCAAGGA TGACACTATC CAAGTACCCT 499 CGATTGAGTC TGTTTCGATA GTCCGTGAGT TTCTAGATGT GTT 56301 | ||||| | |||| | || || | || | || | ||||| ||| CAATTGAATT AGTTTTGGTA GTTTGAGAAT TTTTGGATGT GTT 542 hqPGS_C09HBa0047I13.1+_SGN-E355026- (54639 55000,56124 56301) ******************************************************************************** EST sequence 56 -strand 761 n (File: SGN-E355244-) 1 ATTAGATGCT GTCATCACAG GTAATCTTTC GATTGTGATT GCATGGCTTC TGTATTGTTG 61 ATCCTGGGAT CCACGTTTTC TANTGTATCT TCCTCATTTG CTAACGGTCT AAATTTACAT 121 TGTGAATTAC TTGATATGCC TATTCGTGTT TCTACTCCGG TGGGTGAGTC TGTGGTAGTT 181 GAAAAGGTAT ATAGGTCTTG TTTGGTGAAC TTTGTGGGGA GCAACACTTA TGTAGATTTG 241 GTTATCTTAG AAATGGTTGA TTTTGATGTA ATTCTGGGTA TGACTTGGCT TTCTCCGCAA 301 TTTGCGATCT TGGATTGTAA TGCTAAAACG GTGACATTAG CCAAGCCTGG GACAGATCCG 361 TTAGTGTGGG AGGGTGACTA CACTTCCAAT CCGGTGTGCA TCATCTCCTT TCTTCGTGCT 421 AAGAAAATGG TTAGTAAAGG GTGTTTAGCT TTCTTGGCAC ATCTCAAGGA TGACACTACC 481 CAAGTACCTT CGATTGAGTC GGTTTTTATA GTCTGTGAGT TTTTGGATGT GTTCCCTGCA 541 GATCTTCCTG GTATGCCACC AGATAGGGAT ATTGACTTCT GTATCGATCT TGAACCGGGC 601 ACACGCCCCA TTTCTATACC CCCTTATAGA ATGGCTCCCG TAGAGTTAAG AGAGTTAAAG 661 GCCCAACTTC AAGAGTTGTT GAGCAAAGGT TTCATTAGAC CAAGTGCATC TCCTTGGGGT 721 GCTCCGATTT TGTTTGTGAA GAAGAAGGAT GGGAGTTTCC G Predicted gene structure (within gDNA segment 51768 to 57984): Exon 1 54645 55000 ( 356 n); cDNA 1 355 ( 355 n); score: 0.838 Intron 1 55001 56123 (1123 n); Pd: 0.000 (s: 0.90), Pa: 0.430 (s: 0.78) Exon 2 56124 56264 ( 141 n); cDNA 356 496 ( 141 n); score: 0.809 Intron 2 56265 56309 ( 45 n); Pd: 0.000 (s: 0.86), Pa: 0.683 (s: 0.80) Exon 3 56310 56574 ( 265 n); cDNA 497 761 ( 265 n); score: 0.828 MATCH C09HBa0047I13.1+ SGN-E355244- 0.829 762 1.001 C PGS_C09HBa0047I13.1+_SGN-E355244- (54645 55000,56124 56264,56310 56574) Alignment (genomic DNA sequence = upper lines): ATCTGATGCT GTTATCACAA GTACTTTTTT GGTCTGTGAT TGCATGACTT TTGTATTGTT 54704 || |||||| || |||||| ||| | ||| | | |||||| |||||| ||| ||||||| | ATTAGATGCT GTCATCACAG GTAATCTTTC GAT-TGTGAT TGCATGGCTT CTGTATTG-T 58 TGATCCT-GG ATACACATTT TCATATGAAT CTTCCTCATT TGCTACTGGT CTTGATTTAT 54763 ||||||| || || ||| ||| || || || |||||||||| ||||| ||| || ||||| TGATCCTGGG ATCCACGTTT TCTANTGTAT CTTCCTCATT TGCTAACGGT CTAAATTTAC 118 ATTGTGATTT GCTTGACATG CCTATTCATG TCTCTACTCA TGTGGGTGAG TCTGTGATAG 54823 ||||||| || ||||| ||| ||||||| || | ||||||| ||||||||| |||||| ||| ATTGTGAATT ACTTGATATG CCTATTCGTG TTTCTACTCC GGTGGGTGAG TCTGTGGTAG 178 TTGAGAAGAT GTAACGGTCT TGCCTTGTGA TTTTTGTGGG GAGCAATACT TATGTAGATT 54883 |||| ||| | || ||||| || | |||| |||||||| |||||| ||| |||||||||| TTGAAAAGGT ATATAGGTCT TGTTTGGTGA ACTTTGTGGG GAGCAACACT TATGTAGATT 238 TGATTATTCT AGATATGGTT GATTTTGATG TAATTCTGGG TATGACTTGG CTTTCTCCAA 54943 || |||| | ||| |||||| |||||||||| |||||||||| |||||||||| |||||||| TGGTTATCTT AGAAATGGTT GATTTTGATG TAATTCTGGG TATGACTTGG CTTTCTCCGC 298 ATTTTGAAAT CTTAGATTGT AATGCTAAAA CTGTTACATT GGCCAAGCCT GGGACAGATT 55003 | |||| || ||| |||||| |||||||||| | || ||||| ||||||||| ||||||| AATTTGCGAT CTTGGATTGT AATGCTAAAA CGGTGACATT AGCCAAGCCT GGGACAG... 355 CGCTAGTATA GGAGGGTGAC TATATTTCCA CTCCAGTTCG TATTATTTCT TGTCTTCGTG 55063 .......... .......... .......... .......... .......... .......... 355 CTAAAAGGAT GGTGAGTAAG GGTTTTTTAG ATTTCTTGTC ACATATCAAG GATGATACTT 55123 .......... .......... .......... .......... .......... .......... 355 CCAAAGTATC TTTGATTGAG TCTCTTTTGA TAGTCCGTGA GATGATACAC AGCTTTGCTT 55183 .......... .......... .......... .......... .......... .......... 355 CAGTCCACAA GAGCGGATTT ATTGCTTTCT GAAAGGATTG AGGTTAGGTT TTGCAAATTC 55243 .......... .......... .......... .......... .......... .......... 355 CAGCCTTACA GGTAACTGCT GCAGCAAAAT TGTTTCAGGA ATTGGTTGGT TTTGTGATAG 55303 .......... .......... .......... .......... .......... .......... 355 AGGTAAAGGG GGTAAAGCCA GATGACTTCG CCACAGCATC GACATTTAAG AAGTTTTGTA 55363 .......... .......... .......... .......... .......... .......... 355 AGGGAGGTGA GTTTAGTGAT TCTTACTCAA GAGGGGAGTT CATGAGGTTT TCCAGCCCTT 55423 .......... .......... .......... .......... .......... .......... 355 GAGATTCATT CTTCATTGCA GGCTTCAGGT GGGGGTTCGT CGCAGACCTG ACAGTTTAAC 55483 .......... .......... .......... .......... .......... .......... 355 AGAGACCTAT ACTTGACTCC AGGACTTGTT ATGGATGTGG AGAGGTTGGA CGTATTAGGA 55543 .......... .......... .......... .......... .......... .......... 355 AATACTGTCC AAAACAGAGT TACAGACCCC TAATAGGTAG AGGTAGAGGT GGTCTTGGTA 55603 .......... .......... .......... .......... .......... .......... 355 GAGGCCGCCA TTCTGGAGGA CGTGGTGGCT AAGGTAATGG CAGTCACTAA TTCACTCGGG 55663 .......... .......... .......... .......... .......... .......... 355 TTGGCAGGCA AGTTGGAACT ATTGCAGCGC AACTTGGTGG GGCAGTGGAC AGATAGGTGA 55723 .......... .......... .......... .......... .......... .......... 355 TAGGGCCCAT GGTTATGCTT TCCCCGAGAG GTCTGAAGTA GAGACATGTG ATGTTGTTAT 55783 .......... .......... .......... .......... .......... .......... 355 CACATGTACT CTTTTGGTTT GTGATTGCAT GACTTTTGTA TTGTTTGATC CACGATACAC 55843 .......... .......... .......... .......... .......... .......... 355 ATTTTCATAT GTATCTTCCT CATTTGCTAC TGGTCTTGAT TTATATTGTG ATTTTCTTGA 55903 .......... .......... .......... .......... .......... .......... 355 CATACCTATT CGTGTCTCTA CTACTGTGGG TGAGTCTGTG ATAGTTGTGA AGGTGTATAG 55963 .......... .......... .......... .......... .......... .......... 355 GTCTTGCCTT GTGACTTTTG TGGGAAGCAA TACTTATGTA GATTTTATTA TTCTAGAGAT 56023 .......... .......... .......... .......... .......... .......... 355 GGTTGTTTTT GATGTAATTC AGGGTATGAC TTGGCTTTCT CCAAATTTTG CAATCATAGA 56083 .......... .......... .......... .......... .......... .......... 355 TTGTAATGCT AAACTGTGTT ATTAGCCAAA CCTGGGACAG ATTCGCTAGT ATGGGAGGGT 56143 || || |||| ||||||||| .......... .......... .......... .......... ATCCGTTAGT GTGGGAGGGT 375 GACTATATTT CCACTCCCGT TCGTATTATC TCTTGTCTTT GTGCTAAGAG GATGGTGAGT 56203 ||||| | || ||| ||| || | || ||| || | |||| ||||||||| ||||| ||| GACTACACTT CCAATCCGGT GTGCATCATC TCCTTTCTTC GTGCTAAGAA AATGGTTAGT 435 AAGGTTTGTT TATATTTGTT GGCACATCTC ACGGATGATA CTTCCAAAGT ACCTTCGATT 56263 || | |||| || ||| || |||||||||| | |||||| | || || |||| |||||||||| AAAGGGTGTT TAGCTTTCTT GGCACATCTC AAGGATGACA CTACCCAAGT ACCTTCGATT 495 GAGTCTGTTT CGATAGTCCG TGAGTTTCTA GATGTGTTTT CTGCAGACCT CTGTTTCGAT 56323 | | | | |||| || G......... .......... .......... .......... ......A-GT CGGTTTTTAT 509 AGTCTGTGAG TTTCTAGATG TTTTTCCTGC AGACCTTCCT AGTATGCCAC TGGATAGGGA 56383 |||||||||| ||| | |||| | || ||||| ||| |||||| ||||||||| |||||||| AGTCTGTGAG TTTTTGGATG TGTTCCCTGC AGATCTTCCT GGTATGCCAC CAGATAGGGA 569 TATTGATTTT TGTATTGATG TGGAA-CGGT TACTCGCCCC ATTTCCATTC CCCCTTATAG 56442 |||||| || ||||| ||| | ||| ||| || |||||| ||||| || | |||||||||| TATTGACTTC TGTATCGATC TTGAACCGGG CACACGCCCC ATTTCTATAC CCCCTTATAG 629 AATGGCTCCA GCTGAGTTGA GGGAGTTAAA GGCCCAACTT CAGGAGTTGT TAGGTAAAGG 56502 ||||||||| | ||||| | | |||||||| |||||||||| || ||||||| | | ||||| AATGGCTCCC GTAGAGTTAA GAGAGTTAAA GGCCCAACTT CAAGAGTTGT TGAGCAAAGG 689 TTTTATTAGA CCGAGTGCAG CACCTTGGGG TGCTCTGGTT TTATTTGTGA AGAAGAAAGA 56562 ||| |||||| || |||||| | |||||||| ||||| | || || ||||||| ||||||| || TTTCATTAGA CCAAGTGCAT CTCCTTGGGG TGCTCCGATT TTGTTTGTGA AGAAGAAGGA 749 TGAAAGTTTT CG 56574 || ||||| || TGGGAGTTTC CG 761 hqPGS_C09HBa0047I13.1+_SGN-E355244- (54645 55000,56124 56264,56310 56574) ******************************************************************************** EST sequence 46 -strand 661 n (File: SGN-E351414-) 1 CTAACGGTCT AAATTTACAT TGTGAATTAC TTGATATGCC TATTCGTGTT TCTACTCCGG 61 TGGGTGAGTC TGTGGTAGTT GAAAAGGTAT ATAGGTCTTG TTTGGTGAAC TTTGTGGGGA 121 GCAACACTTA TGTAGATTTG GTTATCTTAG AAATGGTTGA TTTTGATGTA ATTCTGGGTA 181 TGACTTGGCT TTCTCCGCAA TTTGCGATCT TGGATTGTAA TGCTAAAACG GTGACATTAG 241 CCAAGCCTGG GACAGATCCG TTAGTGTGGG AGGGTGACTA CACTTCCAAT CCGGTGTGCA 301 TCATCTCCTT TCTTCGTGCT AAGAAAATGG TTAGTAAAGG GTGTTTAGCT TTCTTGGCAC 361 ATCTCAAGGA TGACACTACC CAAGTACCTT CGATTGAGTC GGTTTTTATA GTCTGTGAGT 421 TTTTGGATGT GTTCCCTGCA GATCTTCCTG GTATGCCACC AGATAGGGAT ATTGACTTCT 481 GTATCGATCT TGAACCGGGC ACACGCCCCA TTTCTATACC CCCTTATAGA ATGGCTCCCG 541 TAGAGTTAAG AGAGTTAAAG GCCCAACTTC AAGAGTTGTT GAGCAAAGGT TTCATTAGAC 601 CAAGTGCATC TCCTTGGGGT GCTCCGATTT TGTTTGTGAA GAAGAAGGAT GGGAGTTTCC 661 G Predicted gene structure (within gDNA segment 52768 to 57984): Exon 1 54746 55000 ( 255 n); cDNA 1 255 ( 255 n); score: 0.855 Intron 1 55001 56123 (1123 n); Pd: 0.000 (s: 0.90), Pa: 0.430 (s: 0.78) Exon 2 56124 56264 ( 141 n); cDNA 256 396 ( 141 n); score: 0.809 Intron 2 56265 56309 ( 45 n); Pd: 0.000 (s: 0.86), Pa: 0.683 (s: 0.80) Exon 3 56310 56574 ( 265 n); cDNA 397 661 ( 265 n); score: 0.828 MATCH C09HBa0047I13.1+ SGN-E351414- 0.834 661 1.000 C PGS_C09HBa0047I13.1+_SGN-E351414- (54746 55000,56124 56264,56310 56574) Alignment (genomic DNA sequence = upper lines): CTACTGGTCT TGATTTATAT TGTGATTTGC TTGACATGCC TATTCATGTC TCTACTCATG 54805 ||| ||||| ||||| || ||||| || | |||| ||||| ||||| ||| ||||||| | CTAACGGTCT AAATTTACAT TGTGAATTAC TTGATATGCC TATTCGTGTT TCTACTCCGG 60 TGGGTGAGTC TGTGATAGTT GAGAAGATGT AACGGTCTTG CCTTGTGATT TTTGTGGGGA 54865 |||||||||| |||| ||||| || ||| | | | ||||||| | |||| |||||||||| TGGGTGAGTC TGTGGTAGTT GAAAAGGTAT ATAGGTCTTG TTTGGTGAAC TTTGTGGGGA 120 GCAATACTTA TGTAGATTTG ATTATTCTAG ATATGGTTGA TTTTGATGTA ATTCTGGGTA 54925 |||| ||||| |||||||||| |||| ||| | |||||||| |||||||||| |||||||||| GCAACACTTA TGTAGATTTG GTTATCTTAG AAATGGTTGA TTTTGATGTA ATTCTGGGTA 180 TGACTTGGCT TTCTCCAAAT TTTGAAATCT TAGATTGTAA TGCTAAAACT GTTACATTGG 54985 |||||||||| |||||| | |||| |||| | |||||||| ||||||||| || ||||| | TGACTTGGCT TTCTCCGCAA TTTGCGATCT TGGATTGTAA TGCTAAAACG GTGACATTAG 240 CCAAGCCTGG GACAGATTCG CTAGTATAGG AGGGTGACTA TATTTCCACT CCAGTTCGTA 55045 |||||||||| ||||| CCAAGCCTGG GACAG..... .......... .......... .......... .......... 255 TTATTTCTTG TCTTCGTGCT AAAAGGATGG TGAGTAAGGG TTTTTTAGAT TTCTTGTCAC 55105 .......... .......... .......... .......... .......... .......... 255 ATATCAAGGA TGATACTTCC AAAGTATCTT TGATTGAGTC TCTTTTGATA GTCCGTGAGA 55165 .......... .......... .......... .......... .......... .......... 255 TGATACACAG CTTTGCTTCA GTCCACAAGA GCGGATTTAT TGCTTTCTGA AAGGATTGAG 55225 .......... .......... .......... .......... .......... .......... 255 GTTAGGTTTT GCAAATTCCA GCCTTACAGG TAACTGCTGC AGCAAAATTG TTTCAGGAAT 55285 .......... .......... .......... .......... .......... .......... 255 TGGTTGGTTT TGTGATAGAG GTAAAGGGGG TAAAGCCAGA TGACTTCGCC ACAGCATCGA 55345 .......... .......... .......... .......... .......... .......... 255 CATTTAAGAA GTTTTGTAAG GGAGGTGAGT TTAGTGATTC TTACTCAAGA GGGGAGTTCA 55405 .......... .......... .......... .......... .......... .......... 255 TGAGGTTTTC CAGCCCTTGA GATTCATTCT TCATTGCAGG CTTCAGGTGG GGGTTCGTCG 55465 .......... .......... .......... .......... .......... .......... 255 CAGACCTGAC AGTTTAACAG AGACCTATAC TTGACTCCAG GACTTGTTAT GGATGTGGAG 55525 .......... .......... .......... .......... .......... .......... 255 AGGTTGGACG TATTAGGAAA TACTGTCCAA AACAGAGTTA CAGACCCCTA ATAGGTAGAG 55585 .......... .......... .......... .......... .......... .......... 255 GTAGAGGTGG TCTTGGTAGA GGCCGCCATT CTGGAGGACG TGGTGGCTAA GGTAATGGCA 55645 .......... .......... .......... .......... .......... .......... 255 GTCACTAATT CACTCGGGTT GGCAGGCAAG TTGGAACTAT TGCAGCGCAA CTTGGTGGGG 55705 .......... .......... .......... .......... .......... .......... 255 CAGTGGACAG ATAGGTGATA GGGCCCATGG TTATGCTTTC CCCGAGAGGT CTGAAGTAGA 55765 .......... .......... .......... .......... .......... .......... 255 GACATGTGAT GTTGTTATCA CATGTACTCT TTTGGTTTGT GATTGCATGA CTTTTGTATT 55825 .......... .......... .......... .......... .......... .......... 255 GTTTGATCCA CGATACACAT TTTCATATGT ATCTTCCTCA TTTGCTACTG GTCTTGATTT 55885 .......... .......... .......... .......... .......... .......... 255 ATATTGTGAT TTTCTTGACA TACCTATTCG TGTCTCTACT ACTGTGGGTG AGTCTGTGAT 55945 .......... .......... .......... .......... .......... .......... 255 AGTTGTGAAG GTGTATAGGT CTTGCCTTGT GACTTTTGTG GGAAGCAATA CTTATGTAGA 56005 .......... .......... .......... .......... .......... .......... 255 TTTTATTATT CTAGAGATGG TTGTTTTTGA TGTAATTCAG GGTATGACTT GGCTTTCTCC 56065 .......... .......... .......... .......... .......... .......... 255 AAATTTTGCA ATCATAGATT GTAATGCTAA ACTGTGTTAT TAGCCAAACC TGGGACAGAT 56125 || .......... .......... .......... .......... .......... ........AT 257 TCGCTAGTAT GGGAGGGTGA CTATATTTCC ACTCCCGTTC GTATTATCTC TTGTCTTTGT 56185 || |||| | |||||||||| ||| | |||| | ||| || | || ||||| | |||| || CCGTTAGTGT GGGAGGGTGA CTACACTTCC AATCCGGTGT GCATCATCTC CTTTCTTCGT 317 GCTAAGAGGA TGGTGAGTAA GGTTTGTTTA TATTTGTTGG CACATCTCAC GGATGATACT 56245 ||||||| | |||| ||||| | |||||| ||| |||| ||||||||| |||||| ||| GCTAAGAAAA TGGTTAGTAA AGGGTGTTTA GCTTTCTTGG CACATCTCAA GGATGACACT 377 TCCAAAGTAC CTTCGATTGA GTCTGTTTCG ATAGTCCGTG AGTTTCTAGA TGTGTTTTCT 56305 || |||||| ||||||||| ACCCAAGTAC CTTCGATTG. .......... .......... .......... .......... 396 GCAGACCTCT GTTTCGATAG TCTGTGAGTT TCTAGATGTT TTTCCTGCAG ACCTTCCTAG 56365 | || |||| |||| |||||||||| | | ||||| || ||||||| | |||||| | ....A-GTCG GTTTTTATAG TCTGTGAGTT TTTGGATGTG TTCCCTGCAG ATCTTCCTGG 451 TATGCCACTG GATAGGGATA TTGATTTTTG TATTGATGTG GAA-CGGTTA CTCGCCCCAT 56424 |||||||| |||||||||| |||| || || ||| ||| | ||| ||| | | |||||||| TATGCCACCA GATAGGGATA TTGACTTCTG TATCGATCTT GAACCGGGCA CACGCCCCAT 511 TTCCATTCCC CCTTATAGAA TGGCTCCAGC TGAGTTGAGG GAGTTAAAGG CCCAACTTCA 56484 ||| || ||| |||||||||| ||||||| | ||||| || |||||||||| |||||||||| TTCTATACCC CCTTATAGAA TGGCTCCCGT AGAGTTAAGA GAGTTAAAGG CCCAACTTCA 571 GGAGTTGTTA GGTAAAGGTT TTATTAGACC GAGTGCAGCA CCTTGGGGTG CTCTGGTTTT 56544 |||||||| | ||||||| | |||||||| |||||| | |||||||||| ||| | |||| AGAGTTGTTG AGCAAAGGTT TCATTAGACC AAGTGCATCT CCTTGGGGTG CTCCGATTTT 631 ATTTGTGAAG AAGAAAGATG AAAGTTTTCG 56574 ||||||||| ||||| |||| ||||| || GTTTGTGAAG AAGAAGGATG GGAGTTTCCG 661 hqPGS_C09HBa0047I13.1+_SGN-E351414- (54746 55000,56124 56264,56310 56574) ******************************************************************************** EST sequence 55 -strand 658 n (File: SGN-E355232-) 1 GTGGTAGTTG AAAAGGTACA TAGTTCTGTT TTGTNGAATT TCGTGGGGAG CAACACTTAT 61 GTAGATTTGG TTTTTTAGAA ATGGGTGACA TTGATGTAAT TCTGGGTATG ACTTGGCTTT 121 CTCCAAATTT TGCGATCTTG GATTGTAATG CTAAAACGGT GACGTTAGCC AAGCCTGGGA 181 CAGATCCGTT AGTGTGGGAG GGTGACTACA CTTCCAATCT GGTGCGTATC ATATCCTTTC 241 TTCGTGCTAA GAAAATGGTT AGTAAAGGGT GTTCAGCTTT CTTGGCACAT CTCAAGGATG 301 ACACTACTCA AGTACCCTCA ATTGAGTCGG TTTCGGTAGT CCGCGAGTTT TTGGACGTGT 361 TTCCTGCAGA TCTTCCTGGT ATGCCACCAG ATAGGGATAT TGACTTCTGT ATCGATCTTG 421 AACCAGGCAC ACGCCCCATT TCTATACCCC CTTATAGAAT GGCTCCCGCC GAATTAAGAG 481 AGTTAAAGGC TCAACTTCAA GAGTTGTTGA GCAAGGTCTT CATTAGACCA AGTGCATCTC 541 CTTGGGGTGC TCCAGTTTTA TTTGTGAAGA AGAAGGATGG AAGTTTTAGA ATGTGCATAG 601 ACTACAGACA ACTGAACAAG GTAACTATTA AGAACAAGTA TCCTCTTCCT CGCATTGA Predicted gene structure (within gDNA segment 53398 to 60332): Exon 1 54817 55000 ( 184 n); cDNA 1 183 ( 183 n); score: 0.826 Intron 1 55001 56123 (1123 n); Pd: 0.000 (s: 0.88), Pa: 0.430 (s: 0.78) Exon 2 56124 56294 ( 171 n); cDNA 184 354 ( 171 n); score: 0.789 Intron 2 56295 56340 ( 46 n); Pd: 0.000 (s: 0.80), Pa: 0.000 (s: 0.86) Exon 3 56341 56643 ( 303 n); cDNA 355 658 ( 304 n); score: 0.830 MATCH C09HBa0047I13.1+ SGN-E355232- 0.818 658 1.000 C PGS_C09HBa0047I13.1+_SGN-E355232- (54817 55000,56124 56294,56341 56643) Alignment (genomic DNA sequence = upper lines): GTGATAGTTG AGAAGATGTA ACGGTCTTGC CTTGTGATTT TTGTGGGGAG CAATACTTAT 54876 ||| |||||| | ||| | | | ||| | || || | |||||||| ||| |||||| GTGGTAGTTG AAAAGGTACA TAGTTCTGTT TTGTNGAATT TCGTGGGGAG CAACACTTAT 60 GTAGATTTGA TTATTCTAGA TATGGTTGAT TTTGATGTAA TTCTGGGTAT GACTTGGCTT 54936 ||||||||| || || |||| |||| ||| ||||||||| |||||||||| |||||||||| GTAGATTTGG TT-TTTTAGA AATGGGTGAC ATTGATGTAA TTCTGGGTAT GACTTGGCTT 119 TCTCCAAATT TTGAAATCTT AGATTGTAAT GCTAAAACTG TTACATTGGC CAAGCCTGGG 54996 |||||||||| ||| ||||| ||||||||| |||||||| | | || || || |||||||||| TCTCCAAATT TTGCGATCTT GGATTGTAAT GCTAAAACGG TGACGTTAGC CAAGCCTGGG 179 ACAGATTCGC TAGTATAGGA GGGTGACTAT ATTTCCACTC CAGTTCGTAT TATTTCTTGT 55056 |||| ACAG...... .......... .......... .......... .......... .......... 183 CTTCGTGCTA AAAGGATGGT GAGTAAGGGT TTTTTAGATT TCTTGTCACA TATCAAGGAT 55116 .......... .......... .......... .......... .......... .......... 183 GATACTTCCA AAGTATCTTT GATTGAGTCT CTTTTGATAG TCCGTGAGAT GATACACAGC 55176 .......... .......... .......... .......... .......... .......... 183 TTTGCTTCAG TCCACAAGAG CGGATTTATT GCTTTCTGAA AGGATTGAGG TTAGGTTTTG 55236 .......... .......... .......... .......... .......... .......... 183 CAAATTCCAG CCTTACAGGT AACTGCTGCA GCAAAATTGT TTCAGGAATT GGTTGGTTTT 55296 .......... .......... .......... .......... .......... .......... 183 GTGATAGAGG TAAAGGGGGT AAAGCCAGAT GACTTCGCCA CAGCATCGAC ATTTAAGAAG 55356 .......... .......... .......... .......... .......... .......... 183 TTTTGTAAGG GAGGTGAGTT TAGTGATTCT TACTCAAGAG GGGAGTTCAT GAGGTTTTCC 55416 .......... .......... .......... .......... .......... .......... 183 AGCCCTTGAG ATTCATTCTT CATTGCAGGC TTCAGGTGGG GGTTCGTCGC AGACCTGACA 55476 .......... .......... .......... .......... .......... .......... 183 GTTTAACAGA GACCTATACT TGACTCCAGG ACTTGTTATG GATGTGGAGA GGTTGGACGT 55536 .......... .......... .......... .......... .......... .......... 183 ATTAGGAAAT ACTGTCCAAA ACAGAGTTAC AGACCCCTAA TAGGTAGAGG TAGAGGTGGT 55596 .......... .......... .......... .......... .......... .......... 183 CTTGGTAGAG GCCGCCATTC TGGAGGACGT GGTGGCTAAG GTAATGGCAG TCACTAATTC 55656 .......... .......... .......... .......... .......... .......... 183 ACTCGGGTTG GCAGGCAAGT TGGAACTATT GCAGCGCAAC TTGGTGGGGC AGTGGACAGA 55716 .......... .......... .......... .......... .......... .......... 183 TAGGTGATAG GGCCCATGGT TATGCTTTCC CCGAGAGGTC TGAAGTAGAG ACATGTGATG 55776 .......... .......... .......... .......... .......... .......... 183 TTGTTATCAC ATGTACTCTT TTGGTTTGTG ATTGCATGAC TTTTGTATTG TTTGATCCAC 55836 .......... .......... .......... .......... .......... .......... 183 GATACACATT TTCATATGTA TCTTCCTCAT TTGCTACTGG TCTTGATTTA TATTGTGATT 55896 .......... .......... .......... .......... .......... .......... 183 TTCTTGACAT ACCTATTCGT GTCTCTACTA CTGTGGGTGA GTCTGTGATA GTTGTGAAGG 55956 .......... .......... .......... .......... .......... .......... 183 TGTATAGGTC TTGCCTTGTG ACTTTTGTGG GAAGCAATAC TTATGTAGAT TTTATTATTC 56016 .......... .......... .......... .......... .......... .......... 183 TAGAGATGGT TGTTTTTGAT GTAATTCAGG GTATGACTTG GCTTTCTCCA AATTTTGCAA 56076 .......... .......... .......... .......... .......... .......... 183 TCATAGATTG TAATGCTAAA CTGTGTTATT AGCCAAACCT GGGACAGATT CGCTAGTATG 56136 || || |||| || .......... .......... .......... .......... .......ATC CGTTAGTGTG 196 GGAGGGTGAC TATATTTCCA CTCCCGTTCG TATTATCTCT TGTCTTTGTG CTAAGAGGAT 56196 |||||||||| || | ||||| || || || ||| || || | |||| ||| |||||| || GGAGGGTGAC TACACTTCCA ATCTGGTGCG TATCATATCC TTTCTTCGTG CTAAGAAAAT 256 GGTGAGTAAG GTTTGTTTAT ATTTGTTGGC ACATCTCACG GATGATACTT CCAAAGTACC 56256 ||| ||||| | |||| | ||| ||||| |||||||| | ||||| ||| | ||||||| GGTTAGTAAA GGGTGTTCAG CTTTCTTGGC ACATCTCAAG GATGACACTA CTCAAGTACC 316 TTCGATTGAG TCTGTTTCGA TAGTCCGTGA GTTTCTAGAT GTGTTTTCTG CAGACCTCTG 56316 || |||||| || |||||| ||||||| || |||| | | CTCAATTGAG TCGGTTTCGG TAGTCCGCGA GTTTTTGG.. .......... .......... 354 TTTCGATAGT CTGTGAGTTT CTAGATGTTT TTCCTGCAGA CCTTCCTAGT ATGCCACTGG 56376 | || | |||||||||| |||||| || ||||||| | .......... .......... ....ACGTGT TTCCTGCAGA TCTTCCTGGT ATGCCACCAG 390 ATAGGGATAT TGATTTTTGT ATTGATGTGG AA-CGGTTAC TCGCCCCATT TCCATTCCCC 56435 |||||||||| ||| || ||| || ||| | | || | | || ||||||||| || || |||| ATAGGGATAT TGACTTCTGT ATCGATCTTG AACCAGGCAC ACGCCCCATT TCTATACCCC 450 CTTATAGAAT GGCTCCAGCT GAGTTGAGGG AGTTAAAGGC CCAACTTCAG GAGTTGTTAG 56495 |||||||||| |||||| || || || || | |||||||||| |||||||| |||||||| CTTATAGAAT GGCTCCCGCC GAATTAAGAG AGTTAAAGGC TCAACTTCAA GAGTTGTTGA 510 GTAAAGGTTT TATTAGACCG AGTGCAGCAC CTTGGGGTGC TCTGGTTTTA TTTGTGAAGA 56555 | || | || |||||||| |||||| | | |||||||||| || |||||| |||||||||| GCAAGGTCTT CATTAGACCA AGTGCATCTC CTTGGGGTGC TCCAGTTTTA TTTGTGAAGA 570 AGAAAGATGA AAGTTTTCGG ATGTGCATAG AATACAGGCA GCTGAATAAG GTAACTCTTA 56615 |||| |||| ||||||| | |||||||||| | ||||| || ||||| ||| |||||| ||| AGAAGGATGG AAGTTTTAGA ATGTGCATAG ACTACAGACA ACTGAACAAG GTAACTATTA 630 AGAACAAGTA TCTCATTCCT TGCATTGA 56643 |||||||||| || ||||| ||||||| AGAACAAGTA TCCTCTTCCT CGCATTGA 658 hqPGS_C09HBa0047I13.1+_SGN-E355232- (54817 55000,56124 56294,56341 56643) ******************************************************************************** EST sequence 41 -strand 331 n (File: SGN-E352716-) 1 TTTTTTTGTG ATTGCATGGC TTTTGTATTA TTTGACCCTG GATCCACATT TTCATATGTA 61 TCTTCCTCAT TTGCTACTGG TCTTAAATTA AATTATGAAT TGCTTGACAT GCCTATTCGT 121 GTTTCTACTC CGGTGGGTGA GTCTGTGATA GTTGAAAAAG TATATAGGTC TGGTCTGGTG 181 ACTTTTGTGG GGAGCAATAC TTATGTAGAC TTGGTTATCT TAGAAATGGT TGATTTTGAT 241 GTAATTCTGG GTATGACTTG GCTTTCTCCA AATTTTGCAA TCTTGGATTG TAATGCTAAA 301 ACTGTGACGT TAGCCAAGCC TGGGACAGAT C Predicted gene structure (within gDNA segment 53532 to 55612): Exon 1 54673 55002 ( 330 n); cDNA 1 330 ( 330 n); score: 0.888 MATCH C09HBa0047I13.1+ SGN-E352716- 0.888 330 0.997 C PGS_C09HBa0047I13.1+_SGN-E352716- (54673 55002) Alignment (genomic DNA sequence = upper lines): TTGGTCTGTG ATTGCATGAC TTTTGTATTG TTTGATCCTG GATACACATT TTCATATGAA 54732 || | |||| |||||||| | ||||||||| ||||| |||| ||| |||||| |||||||| | TTTTTTTGTG ATTGCATGGC TTTTGTATTA TTTGACCCTG GATCCACATT TTCATATGTA 60 TCTTCCTCAT TTGCTACTGG TCTTGATTTA TATTGTGATT TGCTTGACAT GCCTATTCAT 54792 |||||||||| |||||||||| |||| | ||| ||| ||| | |||||||||| |||||||| | TCTTCCTCAT TTGCTACTGG TCTTAAATTA AATTATGAAT TGCTTGACAT GCCTATTCGT 120 GTCTCTACTC ATGTGGGTGA GTCTGTGATA GTTGAGAAGA TGTAACGGTC TTGCCTTGTG 54852 || ||||||| |||||||| |||||||||| ||||| || | || |||| | | || ||| GTTTCTACTC CGGTGGGTGA GTCTGTGATA GTTGAAAAAG TATATAGGTC TGGTCTGGTG 180 ATTTTTGTGG GGAGCAATAC TTATGTAGAT TTGATTATTC TAGATATGGT TGATTTTGAT 54912 | |||||||| |||||||||| ||||||||| ||| |||| |||| ||||| |||||||||| ACTTTTGTGG GGAGCAATAC TTATGTAGAC TTGGTTATCT TAGAAATGGT TGATTTTGAT 240 GTAATTCTGG GTATGACTTG GCTTTCTCCA AATTTTGAAA TCTTAGATTG TAATGCTAAA 54972 |||||||||| |||||||||| |||||||||| ||||||| || |||| ||||| |||||||||| GTAATTCTGG GTATGACTTG GCTTTCTCCA AATTTTGCAA TCTTGGATTG TAATGCTAAA 300 ACTGTTACAT TGGCCAAGCC TGGGACAGAT 55002 ||||| || | | |||||||| |||||||||| ACTGTGACGT TAGCCAAGCC TGGGACAGAT 330 hqPGS_C09HBa0047I13.1+_SGN-E352716- (54673 55002) ******************************************************************************** EST sequence 18 +strand 659 n (File: SGN-E352117+) 1 TTTGATCCTG CCTCCACATT TTCATATGTA TCTTCCTCAT TTGCTACTGT TCTTAATTTA 61 CATAGTGAAT CGCTTGACAT ACCTATTCGT GTTCTACTCC GGTGGGTGAG TCTGTGATTG 121 TTGAAAAGGT GTATAGGTCT TGTCTTGTGA CATTTGTGGG AGCAATACTC ATGTAGACTT 181 GGTTATCCTA TAAATGGTTG ACTTCGATGT AATTCTGGGT ATGACTTGGC TGTCTCCAAA 241 TTTTGCAATC TTGGATTGTA ATGCTAAAAC TGTAACGTTG GCCAAGCCTG AGATAGATGC 301 GTTAGTGTGG GAGGGTGACT ACACTTCCAC TCCAGTTCGT ATCATCTCCT TTCTTTGTGC 361 TAAGAGAATG GTTAGTAAAG GGTGTTTAGC TTTCTTGGCA CACCTCAGGG ATGATACTAC 421 CCAAGTACCT TCAATTGAGT CAGTTTCGAT AGTCCGTGAG TTTCTGGATG TGTTTCCTGC 481 AGACCTTCCT GGTATGCCAC CGGATAGGGA TATTGACTTT TGCATTGATC TGGAGCCGGG 541 TGATCACCCC ATTTCCATAC CCCCTTATAG AATGGCTCCC GCTGAGTTGG GGGAGTTAAA 601 GGCCCAACTT CAAGAGTTGT TANGTAAGGG CTTCATTANG CCAAGTGCAT CCCCTTGGG Predicted gene structure (within gDNA segment 55101 to 57564): Exon 1 55827 56294 ( 468 n); cDNA 1 467 ( 467 n); score: 0.851 Intron 1 56295 56340 ( 46 n); Pd: 0.000 (s: 0.90), Pa: 0.000 (s: 0.92) Exon 2 56341 56531 ( 191 n); cDNA 468 659 ( 192 n); score: 0.861 MATCH C09HBa0047I13.1+ SGN-E352117+ 0.854 659 1.000 C PGS_C09HBa0047I13.1+_SGN-E352117+ (55827 56294,56341 56531) Alignment (genomic DNA sequence = upper lines): TTTGATCCAC GATACACATT TTCATATGTA TCTTCCTCAT TTGCTACTGG TCTTGATTTA 55886 |||||||| | |||||| |||||||||| |||||||||| ||||||||| |||| ||||| TTTGATCCTG CCTCCACATT TTCATATGTA TCTTCCTCAT TTGCTACTGT TCTTAATTTA 60 TATTGTGATT TTCTTGACAT ACCTATTCGT GTCTCTACTA CTGTGGGTGA GTCTGTGATA 55946 || |||| | |||||||| |||||||||| || |||||| | |||||||| ||||||||| CATAGTGAAT CGCTTGACAT ACCTATTCGT GT-TCTACTC CGGTGGGTGA GTCTGTGATT 119 GTTGTGAAGG TGTATAGGTC TTGCCTTGTG ACTTTTGTGG GAAGCAATAC TTATGTAGAT 56006 |||| |||| |||||||||| ||| |||||| || ||||||| | |||||||| | ||||||| GTTGAAAAGG TGTATAGGTC TTGTCTTGTG ACATTTGTGG G-AGCAATAC TCATGTAGAC 178 TTTATTATTC TAGAGATGGT TGTTTTTGAT GTAATTCAGG GTATGACTTG GCTTTCTCCA 56066 || |||| | || | ||||| || || ||| ||||||| || |||||||||| ||| |||||| TTGGTTATCC TATAAATGGT TGACTTCGAT GTAATTCTGG GTATGACTTG GCTGTCTCCA 238 AATTTTGCAA TCATAGATTG TAATGCT-AA ACTGTGTTAT TAGCCAAACC TGGGACAGAT 56125 |||||||||| || | ||||| ||||||| || ||||| | | ||||| || || || |||| AATTTTGCAA TCTTGGATTG TAATGCTAAA ACTGTAACGT TGGCCAAGCC TGAGATAGAT 298 TCGCTAGTAT GGGAGGGTGA CTATATTTCC ACTCCCGTTC GTATTATCTC TTGTCTTTGT 56185 || |||| | |||||||||| ||| | |||| ||||| |||| |||| ||||| | ||||||| GCGTTAGTGT GGGAGGGTGA CTACACTTCC ACTCCAGTTC GTATCATCTC CTTTCTTTGT 358 GCTAAGAGGA TGGTGAGTAA GGTTTGTTTA TATTTGTTGG CACATCTCAC GGATGATACT 56245 |||||||| | |||| ||||| | |||||| ||| |||| |||| |||| |||||||||| GCTAAGAGAA TGGTTAGTAA AGGGTGTTTA GCTTTCTTGG CACACCTCAG GGATGATACT 418 TCCAAAGTAC CTTCGATTGA GTCTGTTTCG ATAGTCCGTG AGTTTCTAGA TGTGTTTTCT 56305 || |||||| |||| ||||| ||| |||||| |||||||||| ||||||| | ACCCAAGTAC CTTCAATTGA GTCAGTTTCG ATAGTCCGTG AGTTTCTGG. .......... 467 GCAGACCTCT GTTTCGATAG TCTGTGAGTT TCTAGATGTT TTTCCTGCAG ACCTTCCTAG 56365 |||| |||||||||| |||||||| | .......... .......... .......... .....ATGTG TTTCCTGCAG ACCTTCCTGG 492 TATGCCACTG GATAGGGATA TTGATTTTTG TATTGATGTG GA-ACGGTTA CTCGCCCCAT 56424 |||||||| | |||||||||| |||| ||||| |||||| || || ||| | || |||||| TATGCCACCG GATAGGGATA TTGACTTTTG CATTGATCTG GAGCCGGGTG ATCACCCCAT 552 TTCCATTCCC CCTTATAGAA TGGCTCCAGC TGAGTTGAGG GAGTTAAAGG CCCAACTTCA 56484 |||||| ||| |||||||||| ||||||| || ||||||| || |||||||||| |||||||||| TTCCATACCC CCTTATAGAA TGGCTCCCGC TGAGTTGGGG GAGTTAAAGG CCCAACTTCA 612 GGAGTTGTTA GGTAAAGGTT TTATTAGACC GAGTGCAGCA CCTTGGG 56531 ||||||||| |||| || | | |||| || |||||| | ||||||| AGAGTTGTTA NGTAAGGGCT TCATTANGCC AAGTGCATCC CCTTGGG 659 hqPGS_C09HBa0047I13.1+_SGN-E352117+ (55827 56294,56341 56531) ******************************************************************************** EST sequence 42 -strand 331 n (File: SGN-E352716-) 1 TTTTTTTGTG ATTGCATGGC TTTTGTATTA TTTGACCCTG GATCCACATT TTCATATGTA 61 TCTTCCTCAT TTGCTACTGG TCTTAAATTA AATTATGAAT TGCTTGACAT GCCTATTCGT 121 GTTTCTACTC CGGTGGGTGA GTCTGTGATA GTTGAAAAAG TATATAGGTC TGGTCTGGTG 181 ACTTTTGTGG GGAGCAATAC TTATGTAGAC TTGGTTATCT TAGAAATGGT TGATTTTGAT 241 GTAATTCTGG GTATGACTTG GCTTTCTCCA AATTTTGCAA TCTTGGATTG TAATGCTAAA 301 ACTGTGACGT TAGCCAAGCC TGGGACAGAT C Predicted gene structure (within gDNA segment 54791 to 57168): Exon 1 55797 56125 ( 329 n); cDNA 1 330 ( 330 n); score: 0.871 MATCH C09HBa0047I13.1+ SGN-E352716- 0.871 329 0.994 C PGS_C09HBa0047I13.1+_SGN-E352716- (55797 56125) Alignment (genomic DNA sequence = upper lines): TTGGTTTGTG ATTGCATGAC TTTTGTATTG TTTGATCCAC GATACACATT TTCATATGTA 55856 || |||||| |||||||| | ||||||||| ||||| || ||| |||||| |||||||||| TTTTTTTGTG ATTGCATGGC TTTTGTATTA TTTGACCCTG GATCCACATT TTCATATGTA 60 TCTTCCTCAT TTGCTACTGG TCTTGATTTA TATTGTGATT TTCTTGACAT ACCTATTCGT 55916 |||||||||| |||||||||| |||| | ||| ||| ||| | | |||||||| ||||||||| TCTTCCTCAT TTGCTACTGG TCTTAAATTA AATTATGAAT TGCTTGACAT GCCTATTCGT 120 GTCTCTACTA CTGTGGGTGA GTCTGTGATA GTTGTGAAGG TGTATAGGTC TTGCCTTGTG 55976 || |||||| | |||||||| |||||||||| |||| || | | |||||||| | | || ||| GTTTCTACTC CGGTGGGTGA GTCTGTGATA GTTGAAAAAG TATATAGGTC TGGTCTGGTG 180 ACTTTTGTGG GAAGCAATAC TTATGTAGAT TTTATTATTC TAGAGATGGT TGTTTTTGAT 56036 |||||||||| | |||||||| ||||||||| || |||| |||| ||||| || ||||||| ACTTTTGTGG GGAGCAATAC TTATGTAGAC TTGGTTATCT TAGAAATGGT TGATTTTGAT 240 GTAATTCAGG GTATGACTTG GCTTTCTCCA AATTTTGCAA TCATAGATTG TAATGCT-AA 56095 ||||||| || |||||||||| |||||||||| |||||||||| || | ||||| ||||||| || GTAATTCTGG GTATGACTTG GCTTTCTCCA AATTTTGCAA TCTTGGATTG TAATGCTAAA 300 ACTGTGTTAT TAGCCAAACC TGGGACAGAT 56125 |||||| | ||||||| || |||||||||| ACTGTGACGT TAGCCAAGCC TGGGACAGAT 330 hqPGS_C09HBa0047I13.1+_SGN-E352716- (55797 56125) ******************************************************************************** EST sequence 62 -strand 679 n (File: SGN-E368762-) 1 CACTCGCCCC ATTTCTATAC CCCCTTATAG AATGGCTCCC GCGGAGTTAA GAGAGTTAAA 61 GGCCCAACTT CAAGAGTTTT TGAGCAAAGT CTTCATTAGA CCAAGTGCAT CTCCTTGGGG 121 TGCTCCGGTT TGGTTTGTGA AGAAGAAGGA TGGGAGTTTT CGGATGTGCA TAGACTACCG 181 GCAGTTGAAC AAGGTAACTA TTAAGAACAA GTATCCACTT CCTCGCATTG ATGACTTGTT 241 CGATCAGTTA CAAGGTGCTT GTGTCTTCTC TAAGATTGAC TTGAGATCCG GTTATCATCA 301 ATTGAAAATA CGGGCAACGG ATGTGCCAAA GACTGCTTTT AGAACCAGGT ATGGGCATTA 361 CGAATTTGTA GTGATGTCTT TTGGTCTTAC GAATGCCCCT GCTGCGTTCA TGAGCTTGAT 421 GAACGGGATT TTAAGCCATA TTTGGATCTC TTTGTCATCA TGTTTATTGA TGATATACTG 481 ATATACTCTA ATAGTAAGAA GGAACATGAG GAGCATTTGA GAATTGTATT AGAAATGTTG 541 AGGGAGAAAA AGCTTTATGC CAAGTTCTCT AAGTGTGAGT TTTGGATAGA TGCAGTGTCC 601 TTCTTGGGGC ACGTGGTTTC TAAGGATGGA GTGATGGTGG ATCCTTGTAA GATTGAGACA 661 GTGAAGAATT GGGTGAGAC Predicted gene structure (within gDNA segment 55632 to 58016): Exon 1 56414 57092 ( 679 n); cDNA 2 679 ( 678 n); score: 0.866 MATCH C09HBa0047I13.1+ SGN-E368762- 0.866 679 1.000 C PGS_C09HBa0047I13.1+_SGN-E368762- (56414 57092) Alignment (genomic DNA sequence = upper lines): ACTCGCCCCA TTTCCATTCC CCCTTATAGA ATGGCTCCAG CTGAGTTGAG GGAGTTAAAG 56473 |||||||||| |||| || || |||||||||| |||||||| | | ||||| || ||||||||| ACTCGCCCCA TTTCTATACC CCCTTATAGA ATGGCTCCCG CGGAGTTAAG AGAGTTAAAG 61 GCCCAACTTC AGGAGTTGTT AGGTAAAGGT TTTATTAGAC CGAGTGCAGC ACCTTGGGGT 56533 |||||||||| | ||||| || | |||| || ||||||| | |||||| | ||||||||| GCCCAACTTC AAGAGTTTTT GAGCAAAGTC TTCATTAGAC CAAGTGCATC TCCTTGGGGT 121 GCTCTGGTTT TATTTGTGAA GAAGAAAGAT GAAAGTTTTC GGATGTGCAT AGAATACAGG 56593 |||| ||||| |||||||| |||||| ||| | ||||||| |||||||||| ||| ||| || GCTCCGGTTT GGTTTGTGAA GAAGAAGGAT GGGAGTTTTC GGATGTGCAT AGACTACCGG 181 CAGCTGAATA AGGTAACTCT TAAGAACAAG TATCTCATTC CTTGCATTGA TGATTAGTTC 56653 ||| |||| | |||||||| | |||||||||| |||| ||| || ||||||| ||| | |||| CAGTTGAACA AGGTAACTAT TAAGAACAAG TATCCACTTC CTCGCATTGA TGACTTGTTC 241 GATTAAGTAC AAGGTGCTTG TGTCTTCTCT AAAATTGATT TGACATCCGG TTATCAGCAA 56713 ||| | ||| |||||||||| |||||||||| || ||||| | ||| |||||| |||||| ||| GATCAGTTAC AAGGTGCTTG TGTCTTCTCT AAGATTGACT TGAGATCCGG TTATCATCAA 301 TTGAAAATAT GGGCAACAAA TGTGCCAAAG ACTGCTTTTT GAACCAGGTG TGGGCATTAT 56773 ||||||||| ||||||| | |||||||||| ||||||||| ||||||||| ||||||||| TTGAAAATAC GGGCAACGGA TGTGCCAAAG ACTGCTTTTA GAACCAGGTA TGGGCATTAC 361 GAATTCTTAG TAAAGTCTTT TGGGCTTAAG AATGCCCCTG CTGCTTTCAT GGGCCTGATG 56833 ||||| ||| | | |||||| ||| |||| | |||||||||| |||| ||||| | || ||||| GAATTTGTAG TGATGTCTTT TGGTCTTACG AATGCCCCTG CTGCGTTCAT GAGCTTGATG 421 AACGGGATTT TTAAGCCATA TCTGGAGCTC TTTGTTATTG TATTTATTGA TGATATACTA 56893 ||||||| || |||||||||| | |||| ||| ||||| || | |||||||| ||||||||| AACGGGA-TT TTAAGCCATA TTTGGATCTC TTTGTCATCA TGTTTATTGA TGATATACTG 480 ATATACTCAA AGAGTAGGAA AGAACATGAG GAGCATTTGA GAAGTCTATT GGAGTTGTTA 56953 |||||||| | | |||| ||| ||||||||| |||||||||| ||| | |||| || |||| ATATACTCTA ATAGTAAGAA GGAACATGAG GAGCATTTGA GAATTGTATT AGAAATGTTG 540 ATGGAGAAAA ATCTTTATGC CAAATTCTTT AAGTGTGAGT TTTGTCTTGC TTCAGTGTCC 57013 | |||||||| | |||||||| ||| |||| | |||||||||| |||| | | | |||||||| AGGGAGAAAA AGCTTTATGC CAAGTTCTCT AAGTGTGAGT TTTGGATAGA TGCAGTGTCC 600 TTCTTGGGGC ATGTGGTTTC TAAGGATGGA GTGATGGTGG ATCATTCTAA GATTGAAGCA 57073 |||||||||| | |||||||| |||||||||| |||||||||| ||| || ||| |||||| || TTCTTGGGGC ACGTGGTTTC TAAGGATGGA GTGATGGTGG ATCCTTGTAA GATTGAGACA 660 GTGAAGATTT GGGTAAAAC 57092 ||||||| || |||| | || GTGAAGAATT GGGTGAGAC 679 hqPGS_C09HBa0047I13.1+_SGN-E368762- (56414 57092) ******************************************************************************** EST sequence 29 -strand 712 n (File: SGN-E379315-) 1 CCGCAGAGTT AAGAGAGTTA AAAGACCACT TCAAAGAGTT GTGAGCAAAG GCTTCATTAG 61 ACCAACTGCA TCTCCTTGGG GTGCTCCGGT TTTGTTTGTA AAGAAGAAGG ATTGGAGTTT 121 TCGGATGTGC ATAGGCTACC GGCAGTGNAA CAAGGTAACC ATAAAGAACA AGTATCCTCT 181 TCCTCGCATT AATGACTTGT TCGATCAGTT ACAAGGTGCT TGTGTCTTTT CTAAGATTGA 241 CTTGAGATCC GGTTATCATC AATTGAAAAT ACGGGCAACG GATGTGCCAA AGACTGCTTT 301 TAGAACCAGG TATGGGCATT ACAAATTTGT AGTGATGTCT TTTGGTCTTA TGAATGCCCC 361 TGCTGCGTTT ATGAGTTTAA TAAAAGGGAT TTTTAAGCCA TATTTGGATC TCTTTGTGAT 421 CGTATTTATT GATGATATAC TGATATACTC TAAAAGTAAG GAGGAACATG AAGAGCATTT 481 GAGAATGGTA TTGGAAATGT TGAGGGAGAA AAAGTTTTAT GCCAAGTTCT CTAAGTGTGA 541 GTTTTGGCTA GATGTAGTGT CCTTCTTGGG GAACGTGGTT TCTAAGGATG GAGTGATGGT 601 GGATCCTTCT AAGATTGAGA CAGTGAAGAA TTGGGTAAGA CCTACTAATG TGTCAGAAAT 661 AAGGAGCTTT GTTGGGTTAG CTAGCTACTA CCGCCGATTT GTCAAGGGAT TC Predicted gene structure (within gDNA segment 52377 to 58726): Exon 1 56453 57162 ( 710 n); cDNA 3 711 ( 709 n); score: 0.837 MATCH C09HBa0047I13.1+ SGN-E379315- 0.837 710 0.997 C PGS_C09HBa0047I13.1+_SGN-E379315- (56453 57162) Alignment (genomic DNA sequence = upper lines): GCTGAGTTGA GGGAGTTAAA GGCCCAACTT CAGGAGTTGT TAGGTAAAGG TTTTATTAGA 56512 || ||||| | | |||||||| | ||| | | ||||||| | | ||||| || |||||| GCAGAGTTAA GAGAGTTAAA AGACCACTTC AAAGAGTTGT GA-GCAAAGG CTTCATTAGA 61 CCGAGTGCAG CACCTTGGGG TGCTCTGGTT TTATTTGTGA AGAAGAAAGA TGAAAGTTTT 56572 || | |||| | |||||||| ||||| |||| || ||||| | ||||||| || | |||||| CCAACTGCAT CTCCTTGGGG TGCTCCGGTT TTGTTTGTAA AGAAGAAGGA TTGGAGTTTT 121 CGGATGTGCA TAGAATACAG GCAGCTGAAT AAGGTAACTC TTAAGAACAA GTATCTCATT 56632 |||||||||| ||| ||| | |||| || |||||||| | |||||||| ||||| || CGGATGTGCA TAGGCTACCG GCAGTGNAAC AAGGTAACCA TAAAGAACAA GTATCCTCTT 181 CCTTGCATTG ATGATTAGTT CGATTAAGTA CAAGGTGCTT GTGTCTTCTC TAAAATTGAT 56692 ||| ||||| |||| | ||| |||| | || |||||||||| ||||||| || ||| ||||| CCTCGCATTA ATGACTTGTT CGATCAGTTA CAAGGTGCTT GTGTCTTTTC TAAGATTGAC 241 TTGACATCCG GTTATCAGCA ATTGAAAATA TGGGCAACAA ATGTGCCAAA GACTGCTTTT 56752 |||| ||||| ||||||| || |||||||||| ||||||| |||||||||| |||||||||| TTGAGATCCG GTTATCATCA ATTGAAAATA CGGGCAACGG ATGTGCCAAA GACTGCTTTT 301 TGAACCAGGT GTGGGCATTA TGAATTCTTA GTAAAGTCTT TTGGGCTTAA GAATGCCCCT 56812 ||||||||| ||||||||| |||| || || | ||||| |||| |||| |||||||||| AGAACCAGGT ATGGGCATTA CAAATTTGTA GTGATGTCTT TTGGTCTTAT GAATGCCCCT 361 GCTGCTTTCA TGGGCCTGAT GAACGGGATT TTTAAGCCAT ATCTGGAGCT CTTTGTTATT 56872 ||||| || | || | | || || |||||| |||||||||| || |||| || |||||| || GCTGCGTTTA TGAGTTTAAT AAAAGGGATT TTTAAGCCAT ATTTGGATCT CTTTGTGATC 421 GTATTTATTG ATGATATACT AATATACTCA AAGAGTAGGA AAGAACATGA GGAGCATTTG 56932 |||||||||| |||||||||| |||||||| || |||| | | |||||||| ||||||||| GTATTTATTG ATGATATACT GATATACTCT AAAAGTAAGG AGGAACATGA AGAGCATTTG 481 AGAAGTCTAT TGGAGTTGTT AATGGAGAAA AATCTTTATG CCAAATTCTT TAAGTGTGAG 56992 |||| ||| |||| |||| | ||||||| || |||||| |||| |||| |||||||||| AGAATGGTAT TGGAAATGTT GAGGGAGAAA AAGTTTTATG CCAAGTTCTC TAAGTGTGAG 541 TTTTGTCTTG CTTCAGTGTC CTTCTTGGGG CATGTGGTTT CTAAGGATGG AGTGATGGTG 57052 ||||| || | | |||||| |||||||||| | ||||||| |||||||||| |||||||||| TTTTGGCTAG ATGTAGTGTC CTTCTTGGGG AACGTGGTTT CTAAGGATGG AGTGATGGTG 601 GATCATTCTA AGATTGAAGC AGTGAAGATT TGGGTAAAAC CTACTAATGT TTCAGATGTA 57112 |||| ||||| ||||||| | |||||||| | ||||||| || |||||||||| ||||| || GATCCTTCTA AGATTGAGAC AGTGAAGAAT TGGGTAAGAC CTACTAATGT GTCAGAAATA 661 ACGAGCTTTG TTGGTTTAGC TAGCTACTAC CGTCGATTCA TCTAGGTATT 57162 | |||||||| |||| ||||| |||||||||| || ||||| || ||| ||| AGGAGCTTTG TTGGGTTAGC TAGCTACTAC CGCCGATTTG TCAAGGGATT 711 hqPGS_C09HBa0047I13.1+_SGN-E379315- (56453 57162) ******************************************************************************** EST sequence 40 -strand 596 n (File: SGN-E375319-) 1 GTTTTCGGAT GTGCATAGGC TACCGGCAGT TGAACAAGGT AACCATAAAG AACAAGTATC 61 CTCTTCCTCG CATTAATGAC TTGTTCGATC AGTTACAAGG TGCTTGTGTC TTTTCTAAGA 121 TTGACTTGAG ATCCGGTTAT CATCAATTGA AAATACGGGC AACGGATGTG CCAAAGACTG 181 CTTTTAGAAC CAGGTATGGG CATTACAAAT TTGTAGTGAT GTCTTTTGGT CTTATGAATG 241 CCCCTGCTGC GTTTATGAGT TTAATAAAAG GGATTTTTAA GCCATATTTG GATCTCTTTG 301 TGATCGTATT TATTGATGAT ATACTGATAT ACTCTAAAAG TAAGGAGGAA CATGAAGAGC 361 ATTTGAGAAT GGTATTGGAA ATGTTGAGGG AGAAAAAGTT TTATGCCAAG TTCTCTAAGT 421 GTGAGTTTTG GCTAGATGTA GTGTCCTTCT TGGGGAACGT GGTTTCTAAG GATGGAGTGA 481 TGGTGGATCC TTCTAAGATT GAGACAGTGA AGAATTGGGT AAGACCTACT AATGTGTCAG 541 AAATAAGGAG CTTTGTTGGG TTAGCTAGCT ACTACCGCCG ATTTGTCAAG GGATTC Predicted gene structure (within gDNA segment 53537 to 58726): Exon 1 56568 57162 ( 595 n); cDNA 1 595 ( 595 n); score: 0.852 MATCH C09HBa0047I13.1+ SGN-E375319- 0.852 595 0.998 C PGS_C09HBa0047I13.1+_SGN-E375319- (56568 57162) Alignment (genomic DNA sequence = upper lines): GTTTTCGGAT GTGCATAGAA TACAGGCAGC TGAATAAGGT AACTCTTAAG AACAAGTATC 56627 |||||||||| |||||||| ||| ||||| |||| ||||| ||| | ||| |||||||||| GTTTTCGGAT GTGCATAGGC TACCGGCAGT TGAACAAGGT AACCATAAAG AACAAGTATC 60 TCATTCCTTG CATTGATGAT TAGTTCGATT AAGTACAAGG TGCTTGTGTC TTCTCTAAAA 56687 ||||| | |||| |||| | ||||||| | ||||||| |||||||||| || ||||| | CTCTTCCTCG CATTAATGAC TTGTTCGATC AGTTACAAGG TGCTTGTGTC TTTTCTAAGA 120 TTGATTTGAC ATCCGGTTAT CAGCAATTGA AAATATGGGC AACAAATGTG CCAAAGACTG 56747 |||| |||| |||||||||| || ||||||| ||||| |||| ||| ||||| |||||||||| TTGACTTGAG ATCCGGTTAT CATCAATTGA AAATACGGGC AACGGATGTG CCAAAGACTG 180 CTTTTTGAAC CAGGTGTGGG CATTATGAAT TCTTAGTAAA GTCTTTTGGG CTTAAGAATG 56807 ||||| |||| ||||| |||| ||||| ||| | |||| | ||||||||| |||| ||||| CTTTTAGAAC CAGGTATGGG CATTACAAAT TTGTAGTGAT GTCTTTTGGT CTTATGAATG 240 CCCCTGCTGC TTTCATGGGC CTGATGAACG GGATTTTTAA GCCATATCTG GAGCTCTTTG 56867 |||||||||| || ||| | | || || | |||||||||| ||||||| || || ||||||| CCCCTGCTGC GTTTATGAGT TTAATAAAAG GGATTTTTAA GCCATATTTG GATCTCTTTG 300 TTATTGTATT TATTGATGAT ATACTAATAT ACTCAAAGAG TAGGAAAGAA CATGAGGAGC 56927 | || ||||| |||||||||| ||||| |||| |||| || || || | | ||| ||||| |||| TGATCGTATT TATTGATGAT ATACTGATAT ACTCTAAAAG TAAGGAGGAA CATGAAGAGC 360 ATTTGAGAAG TCTATTGGAG TTGTTAATGG AGAAAAATCT TTATGCCAAA TTCTTTAAGT 56987 ||||||||| ||||||| |||| | || ||||||| | ||||||||| |||| ||||| ATTTGAGAAT GGTATTGGAA ATGTTGAGGG AGAAAAAGTT TTATGCCAAG TTCTCTAAGT 420 GTGAGTTTTG TCTTGCTTCA GTGTCCTTCT TGGGGCATGT GGTTTCTAAG GATGGAGTGA 57047 |||||||||| || | | | |||||||||| ||||| | || |||||||||| |||||||||| GTGAGTTTTG GCTAGATGTA GTGTCCTTCT TGGGGAACGT GGTTTCTAAG GATGGAGTGA 480 TGGTGGATCA TTCTAAGATT GAAGCAGTGA AGATTTGGGT AAAACCTACT AATGTTTCAG 57107 ||||||||| |||||||||| || |||||| ||| |||||| || ||||||| ||||| |||| TGGTGGATCC TTCTAAGATT GAGACAGTGA AGAATTGGGT AAGACCTACT AATGTGTCAG 540 ATGTAACGAG CTTTGTTGGT TTAGCTAGCT ACTACCGTCG ATTCATCTAG GTATT 57162 | ||| ||| ||||||||| |||||||||| ||||||| || ||| || || | ||| AAATAAGGAG CTTTGTTGGG TTAGCTAGCT ACTACCGCCG ATTTGTCAAG GGATT 595 hqPGS_C09HBa0047I13.1+_SGN-E375319- (56568 57162) ******************************************************************************** EST sequence 33 -strand 526 n (File: SGN-E204434-) 1 CATTAATGAC TTGTTCGATC AGTTACAAGG TGCTTGTGTC TTTTCTAAGA TTGACTTGAG 61 ATCCGGTTAT CATCAATTGA AAATACGGGC AACGGATGTG CCAAAGACTG CTTTTAGAAC 121 CAGGTATGGG CATTACAAAT TTGTAGTGAT GTCTTTTGGT CTTATGAATG CCCCTGCTGC 181 GTTTATGAGT TTAATAAAAG GGATTTTTAA GCCATATTTG GATCTCTTTG TGATCGTATT 241 TATTGATGAT ATACTGATAT ACTCTAAAAG TAAGGAGGAA CATGAAGAGC ATTTGAGAAT 301 GGTATTGGAA ATGTTGAGGG AGAAAAAGTT TTATGCCAAG TTCTCTAAGT GTGAGTTTTG 361 GCTAGATGTA GTGTCCTTCT TGGGGAACGT GGTTTCTAAG GATGGAGTGA TGGTGGATCC 421 TTCTAAGATT GAGACAGTGA AGAATTGGGT AAGACCTACT AATGTGTCAG AAATAAGGAG 481 CTTTGTTGGG TTAGCTAGCT ACTACCGCCG ATTTGTCAAG GGATTC Predicted gene structure (within gDNA segment 54237 to 58726): Exon 1 56638 57162 ( 525 n); cDNA 1 525 ( 525 n); score: 0.855 MATCH C09HBa0047I13.1+ SGN-E204434- 0.855 525 0.998 C PGS_C09HBa0047I13.1+_SGN-E204434- (56638 57162) Alignment (genomic DNA sequence = upper lines): CATTGATGAT TAGTTCGATT AAGTACAAGG TGCTTGTGTC TTCTCTAAAA TTGATTTGAC 56697 |||| |||| | ||||||| | ||||||| |||||||||| || ||||| | |||| |||| CATTAATGAC TTGTTCGATC AGTTACAAGG TGCTTGTGTC TTTTCTAAGA TTGACTTGAG 60 ATCCGGTTAT CAGCAATTGA AAATATGGGC AACAAATGTG CCAAAGACTG CTTTTTGAAC 56757 |||||||||| || ||||||| ||||| |||| ||| ||||| |||||||||| ||||| |||| ATCCGGTTAT CATCAATTGA AAATACGGGC AACGGATGTG CCAAAGACTG CTTTTAGAAC 120 CAGGTGTGGG CATTATGAAT TCTTAGTAAA GTCTTTTGGG CTTAAGAATG CCCCTGCTGC 56817 ||||| |||| ||||| ||| | |||| | ||||||||| |||| ||||| |||||||||| CAGGTATGGG CATTACAAAT TTGTAGTGAT GTCTTTTGGT CTTATGAATG CCCCTGCTGC 180 TTTCATGGGC CTGATGAACG GGATTTTTAA GCCATATCTG GAGCTCTTTG TTATTGTATT 56877 || ||| | | || || | |||||||||| ||||||| || || ||||||| | || ||||| GTTTATGAGT TTAATAAAAG GGATTTTTAA GCCATATTTG GATCTCTTTG TGATCGTATT 240 TATTGATGAT ATACTAATAT ACTCAAAGAG TAGGAAAGAA CATGAGGAGC ATTTGAGAAG 56937 |||||||||| ||||| |||| |||| || || || | | ||| ||||| |||| ||||||||| TATTGATGAT ATACTGATAT ACTCTAAAAG TAAGGAGGAA CATGAAGAGC ATTTGAGAAT 300 TCTATTGGAG TTGTTAATGG AGAAAAATCT TTATGCCAAA TTCTTTAAGT GTGAGTTTTG 56997 ||||||| |||| | || ||||||| | ||||||||| |||| ||||| |||||||||| GGTATTGGAA ATGTTGAGGG AGAAAAAGTT TTATGCCAAG TTCTCTAAGT GTGAGTTTTG 360 TCTTGCTTCA GTGTCCTTCT TGGGGCATGT GGTTTCTAAG GATGGAGTGA TGGTGGATCA 57057 || | | | |||||||||| ||||| | || |||||||||| |||||||||| ||||||||| GCTAGATGTA GTGTCCTTCT TGGGGAACGT GGTTTCTAAG GATGGAGTGA TGGTGGATCC 420 TTCTAAGATT GAAGCAGTGA AGATTTGGGT AAAACCTACT AATGTTTCAG ATGTAACGAG 57117 |||||||||| || |||||| ||| |||||| || ||||||| ||||| |||| | ||| ||| TTCTAAGATT GAGACAGTGA AGAATTGGGT AAGACCTACT AATGTGTCAG AAATAAGGAG 480 CTTTGTTGGT TTAGCTAGCT ACTACCGTCG ATTCATCTAG GTATT 57162 ||||||||| |||||||||| ||||||| || ||| || || | ||| CTTTGTTGGG TTAGCTAGCT ACTACCGCCG ATTTGTCAAG GGATT 525 hqPGS_C09HBa0047I13.1+_SGN-E204434- (56638 57162) ******************************************************************************** EST sequence 67 -strand 358 n (File: SGN-E240817-) 1 TGTGCCAAAG ACTGCTTTTA GAACCAGGTA TGGGCATTAC GAATTTGTAG TGATGTCTTT 61 TGGTCTTACG AATGCCCCTG CTGCGTTCAT GAGCTTGATG AACGGGATTT TAAGCCATAT 121 TTGGATCTCT GCGTCATCAT GTTCATTGAT GATATACTGA TATCCTCTAA TAGTAAGAAG 181 GAACATGAGG AGCATTTGAG AATTGTATTA GAAATGTTGA GGGAGAAAAA GCTTTATGCC 241 AAGTTCTCTA AGTGTGAGTT TTGGATAGAT GCAGTGTCCT TCTTGGGGCA CGTGGTTTCT 301 AAGGATGGAG TGATGGTGGA TCCTGGTAAG ATTGAGACAG TGAAGAAATG GGTGAGAC Predicted gene structure (within gDNA segment 53686 to 58016): Exon 1 56734 57092 ( 359 n); cDNA 1 358 ( 358 n); score: 0.852 MATCH C09HBa0047I13.1+ SGN-E240817- 0.852 359 1.003 C PGS_C09HBa0047I13.1+_SGN-E240817- (56734 57092) Alignment (genomic DNA sequence = upper lines): TGTGCCAAAG ACTGCTTTTT GAACCAGGTG TGGGCATTAT GAATTCTTAG TAAAGTCTTT 56793 |||||||||| ||||||||| ||||||||| ||||||||| ||||| ||| | | |||||| TGTGCCAAAG ACTGCTTTTA GAACCAGGTA TGGGCATTAC GAATTTGTAG TGATGTCTTT 60 TGGGCTTAAG AATGCCCCTG CTGCTTTCAT GGGCCTGATG AACGGGATTT TTAAGCCATA 56853 ||| |||| | |||||||||| |||| ||||| | || ||||| ||||||| || |||||||||| TGGTCTTACG AATGCCCCTG CTGCGTTCAT GAGCTTGATG AACGGGA-TT TTAAGCCATA 119 TCTGGAGCTC TTTGTTATTG TATTTATTGA TGATATACTA ATATACTCAA AGAGTAGGAA 56913 | |||| ||| | || || | || ||||| ||||||||| |||| ||| | | |||| ||| TTTGGATCTC TGCGTCATCA TGTTCATTGA TGATATACTG ATATCCTCTA ATAGTAAGAA 179 AGAACATGAG GAGCATTTGA GAAGTCTATT GGAGTTGTTA ATGGAGAAAA ATCTTTATGC 56973 ||||||||| |||||||||| ||| | |||| || |||| | |||||||| | |||||||| GGAACATGAG GAGCATTTGA GAATTGTATT AGAAATGTTG AGGGAGAAAA AGCTTTATGC 239 CAAATTCTTT AAGTGTGAGT TTTGTCTTGC TTCAGTGTCC TTCTTGGGGC ATGTGGTTTC 57033 ||| |||| | |||||||||| |||| | | | |||||||| |||||||||| | |||||||| CAAGTTCTCT AAGTGTGAGT TTTGGATAGA TGCAGTGTCC TTCTTGGGGC ACGTGGTTTC 299 TAAGGATGGA GTGATGGTGG ATCATTCTAA GATTGAAGCA GTGAAGATTT GGGTAAAAC 57092 |||||||||| |||||||||| ||| | ||| |||||| || ||||||| | |||| | || TAAGGATGGA GTGATGGTGG ATCCTGGTAA GATTGAGACA GTGAAGAAAT GGGTGAGAC 358 hqPGS_C09HBa0047I13.1+_SGN-E240817- (56734 57092) ******************************************************************************** EST sequence 50 -strand 587 n (File: SGN-E352950-) 1 GCAATTAAAG GTGCATGAAC GTAATTATCC GACCCATGAT TTGGAGTTAG CGGCAGTAGT 61 GATTGCATTA AAGTAATAGA GACATTATCT CTATGGGGTT AAGTGTGAAG TCTATATGGA 121 TCATCGTAGT TTACAGTATG TCTTTACTCA GAAAGATTTG AATTTGAGAC AGAGGAGATC 181 GATGGAGCTA CTGAAGGACT ATGATATCAC TATCTTGTAT CATCCGGGAA AGGCTAATGT 241 TGTGGCAGAT GCTTTAAGTA GAAAGGCAGG GAGCATGGGA AGTCTAGCTC ACTTGCAGGT 301 TTCTAGATGC CCATTGGCTA GAGAGGTTCA GACTCTGGCT AATGACCTTA TGAGGCTAGA 361 ATTAAATGAG AAGGGAGAAT TTTTGGCTTG TGTGGAGGCA AGATCTTCCT TTCTTGATAA 421 GATTAAAGGA AAGCAGTTTA CCGATGAGAA ACTGATCTGG ATTCGAGATA AGGTAATGCG 481 AGGAGAGGCT AAAGAAGCAA AAATCGATAA GGAAGGTGTT TTGAGGATTA AGGGAAAGGT 541 ATGTGTACCC CGTGCCGACG ATTTGATTCA CACTATTCTT ACAGAGG Predicted gene structure (within gDNA segment 55880 to 61483): Exon 1 57390 57975 ( 586 n); cDNA 1 587 ( 587 n); score: 0.849 MATCH C09HBa0047I13.1+ SGN-E352950- 0.849 586 0.998 C PGS_C09HBa0047I13.1+_SGN-E352950- (57390 57975) Alignment (genomic DNA sequence = upper lines): GCAATTGAAA GTGCATGAAC ATAACTATCC AACCCATGAT TTGGATTTGG CTGCAGTTGT 57449 |||||| || |||||||||| ||| ||||| ||||||||| ||||| || | | ||||| || GCAATTAAAG GTGCATGAAC GTAATTATCC GACCCATGAT TTGGAGTTAG CGGCAGTAGT 60 ATTTGCATTA AAGCAATGGA GACATTATCT ATATGGGGTC AAGTGTGAAG TCTATACAGA 57509 |||||||| ||| ||| || |||||||||| |||||||| |||||||||| |||||| || GATTGCATTA AAGTAATAGA GACATTATCT CTATGGGGTT AAGTGTGAAG TCTATATGGA 120 TCATCGTAGT TTACCATATG TCTTTACTCA GAAAGATTTG AATTTGAGGC GGAGGAGGTG 57569 |||||||||| |||| |||| |||||||||| |||||||||| |||||||| | |||||| | TCATCGTAGT TTACAGTATG TCTTTACTCA GAAAGATTTG AATTTGAGAC AGAGGAGATC 180 GATGGAACTA TTGAAAGATA ATGATATTAC TATTTTGTAT CACCTAGGAA AAGCTAATGT 57629 |||||| ||| |||| || ||||||| || ||| |||||| || | |||| | |||||||| GATGGAGCTA CTGAAGGACT ATGATATCAC TATCTTGTAT CATCCGGGAA AGGCTAATGT 240 TGTGGCAGAT GCTTTAAGTA GAAAAGTAGG GAGCATGGGT AGTTTAGCCC ACTCACAGGT 57689 |||||||||| |||||||||| |||| | ||| ||||||||| ||| |||| | ||| ||||| TGTGGCAGAT GCTTTAAGTA GAAAGGCAGG GAGCATGGGA AGTCTAGCTC ACTTGCAGGT 300 TTCTAGACGC CCATTGGCTA GAGAAGTTCA AACTCTGGCT AATGACTTTA TGAGGTTGGA 57749 ||||||| || |||||||||| |||| ||||| ||||||||| |||||| ||| ||||| | || TTCTAGATGC CCATTGGCTA GAGAGGTTCA GACTCTGGCT AATGACCTTA TGAGGCTAGA 360 AGTACTAGAG AAAGGAGGAT TTTTTGCTTG TGTGGAGGCA AGATCTTCTT TTCTTGAAAA 57809 | || ||| || |||| || |||| ||||| |||||||||| |||||||| | ||||||| || ATTAAATGAG AAGGGAGAAT TTTTGGCTTG TGTGGAGGCA AGATCTTCCT TTCTTGATAA 420 GATTAAGGGA AATCAGTTTG ATGATGAGAA GCTGAGACGA ATTTGAGATA TGGTATTGCG 57869 |||||| ||| || |||||| |||||||| |||| | ||| |||||| |||| |||| GATTAAAGGA AAGCAGTTTA CCGATGAGAA ACTGATCTGG ATTCGAGATA AGGTAATGCG 480 AGGAGAGGC- AAAGAGGCAG TAATTGATGA AGAAGGCATC TTGATGATTA AGGAAAGGGT 57928 ||||||||| ||||| ||| ||| ||| | ||||| | |||| ||||| ||| || ||| AGGAGAGGCT AAAGAAGCAA AAATCGATAA GGAAGGTGTT TTGAGGATTA AGGGAAAGGT 540 ATGTGTGCCC CGTGTGGATG ATTTGATTCA CACTATTCTT GCAGAGG 57975 |||||| ||| |||| || | |||||||||| |||||||||| |||||| ATGTGTACCC CGTGCCGACG ATTTGATTCA CACTATTCTT ACAGAGG 587 hqPGS_C09HBa0047I13.1+_SGN-E352950- (57390 57975) ******************************************************************************** EST sequence 64 -strand 587 n (File: SGN-E357100-) 1 GCAATTAAAG GTGCATGAAC GTAATTATCC GACCCATGAT TTGGAGTTAG CGGCAGTAGT 61 GATTGCATTA AAGTAATAGA GACATTATCT CTATGGGGTT AAGTGTGAAG TCTATATGGA 121 TCATCGTAGT TTACAGTATG TCTTTACTCA GAAAGATTTG AATTTGAGAC AGAGGAGATC 181 GATGGAGCTA CTGAAGGACT ATGATATCAC TATCTTGTAT CATCCGGGAA AGGCTAATGT 241 TGTGGCAGAT GCTTTAAGTA GAAAGGCAGG GAGCATGGGA AGTCTAGCTC ACTTGCAGGT 301 TTCTAGATGC CCATTGGCTA GAGAGGTTCA GACTCTGGCT AATGACCTTA TGAGGCTAGA 361 ATTAAATGAG AAGGGAGAAT TTTTGGCTTG TGTGGAGGCA AGATCTTCCT TTCTTGATAA 421 GATTAAAGGA AAGCAGTTTA CCGATGAGAA ACTGATCTGG ATTCGAGATA AGGTAATGCG 481 AGGAGAGGCT AAAGAAGCAA AAATCGATAA GGAAGGTGTT TTGAGGATTA AGGGAAAGGT 541 ATGTGTACCC CGTGCCGACG ATTTGATTCA CACTATTCTT ACAGAGG Predicted gene structure (within gDNA segment 55880 to 61483): Exon 1 57390 57975 ( 586 n); cDNA 1 587 ( 587 n); score: 0.849 MATCH C09HBa0047I13.1+ SGN-E357100- 0.849 586 0.998 C PGS_C09HBa0047I13.1+_SGN-E357100- (57390 57975) Alignment (genomic DNA sequence = upper lines): GCAATTGAAA GTGCATGAAC ATAACTATCC AACCCATGAT TTGGATTTGG CTGCAGTTGT 57449 |||||| || |||||||||| ||| ||||| ||||||||| ||||| || | | ||||| || GCAATTAAAG GTGCATGAAC GTAATTATCC GACCCATGAT TTGGAGTTAG CGGCAGTAGT 60 ATTTGCATTA AAGCAATGGA GACATTATCT ATATGGGGTC AAGTGTGAAG TCTATACAGA 57509 |||||||| ||| ||| || |||||||||| |||||||| |||||||||| |||||| || GATTGCATTA AAGTAATAGA GACATTATCT CTATGGGGTT AAGTGTGAAG TCTATATGGA 120 TCATCGTAGT TTACCATATG TCTTTACTCA GAAAGATTTG AATTTGAGGC GGAGGAGGTG 57569 |||||||||| |||| |||| |||||||||| |||||||||| |||||||| | |||||| | TCATCGTAGT TTACAGTATG TCTTTACTCA GAAAGATTTG AATTTGAGAC AGAGGAGATC 180 GATGGAACTA TTGAAAGATA ATGATATTAC TATTTTGTAT CACCTAGGAA AAGCTAATGT 57629 |||||| ||| |||| || ||||||| || ||| |||||| || | |||| | |||||||| GATGGAGCTA CTGAAGGACT ATGATATCAC TATCTTGTAT CATCCGGGAA AGGCTAATGT 240 TGTGGCAGAT GCTTTAAGTA GAAAAGTAGG GAGCATGGGT AGTTTAGCCC ACTCACAGGT 57689 |||||||||| |||||||||| |||| | ||| ||||||||| ||| |||| | ||| ||||| TGTGGCAGAT GCTTTAAGTA GAAAGGCAGG GAGCATGGGA AGTCTAGCTC ACTTGCAGGT 300 TTCTAGACGC CCATTGGCTA GAGAAGTTCA AACTCTGGCT AATGACTTTA TGAGGTTGGA 57749 ||||||| || |||||||||| |||| ||||| ||||||||| |||||| ||| ||||| | || TTCTAGATGC CCATTGGCTA GAGAGGTTCA GACTCTGGCT AATGACCTTA TGAGGCTAGA 360 AGTACTAGAG AAAGGAGGAT TTTTTGCTTG TGTGGAGGCA AGATCTTCTT TTCTTGAAAA 57809 | || ||| || |||| || |||| ||||| |||||||||| |||||||| | ||||||| || ATTAAATGAG AAGGGAGAAT TTTTGGCTTG TGTGGAGGCA AGATCTTCCT TTCTTGATAA 420 GATTAAGGGA AATCAGTTTG ATGATGAGAA GCTGAGACGA ATTTGAGATA TGGTATTGCG 57869 |||||| ||| || |||||| |||||||| |||| | ||| |||||| |||| |||| GATTAAAGGA AAGCAGTTTA CCGATGAGAA ACTGATCTGG ATTCGAGATA AGGTAATGCG 480 AGGAGAGGC- AAAGAGGCAG TAATTGATGA AGAAGGCATC TTGATGATTA AGGAAAGGGT 57928 ||||||||| ||||| ||| ||| ||| | ||||| | |||| ||||| ||| || ||| AGGAGAGGCT AAAGAAGCAA AAATCGATAA GGAAGGTGTT TTGAGGATTA AGGGAAAGGT 540 ATGTGTGCCC CGTGTGGATG ATTTGATTCA CACTATTCTT GCAGAGG 57975 |||||| ||| |||| || | |||||||||| |||||||||| |||||| ATGTGTACCC CGTGCCGACG ATTTGATTCA CACTATTCTT ACAGAGG 587 hqPGS_C09HBa0047I13.1+_SGN-E357100- (57390 57975) ******************************************************************************** EST sequence 43 -strand 554 n (File: SGN-E352647-) 1 CCATGATTTG GAGTTAGCGG CAGTAGTGAT TGCATTAAAG TAATAGAGCC ATTATCTCTA 61 TGGGTTTAAG TGTGAAGTCT ATATGGATCA TCGTAGTTTA CAGTATGTCT TTACTCAGAA 121 AGATTTGAAT TTGAGACAGA GGAGATCGAT GGAGCTACTG AAGGACTATG ATATCACTAT 181 CTTGTATCAT CCGGGAAAGG CTAATGTTGT GGCAGATGCT TTAAGTAGAA AGGCAGGGAG 241 CATGGGAAGT CTAGCTCACT TGCAGGTTTC TAGATGCCCA TTGGCTAGAG AGGTTCAGAC 301 TCTGGCTAAT GACCTTATGA GGCTAGAATT AAATGAGAAG GGAGAATTTT TGGCTTGTGT 361 GGAGGCAAGA TCTTCCTTTC TTGATAAGAT TAAAGGAAAG CAGTTTACCG ATGAGAAACT 421 GATCTGGATT CGAGATAAGG TAATGCGAGG AGAGGCTAAA GAAGCAAAAA TCGATAAGGA 481 AGGTGTTTTG AGGATTAAGG GAAAGGTATG TGTACCCCGT GCCGACGATT TGATTCACAC 541 TATTCTTACA GAGG Predicted gene structure (within gDNA segment 56210 to 61483): Exon 1 57423 57975 ( 553 n); cDNA 1 554 ( 554 n); score: 0.845 MATCH C09HBa0047I13.1+ SGN-E352647- 0.845 553 0.998 C PGS_C09HBa0047I13.1+_SGN-E352647- (57423 57975) Alignment (genomic DNA sequence = upper lines): CCATGATTTG GATTTGGCTG CAGTTGTATT TGCATTAAAG CAATGGAGAC ATTATCTATA 57482 |||||||||| || || || | |||| || | |||||||||| ||| ||| | ||||||| || CCATGATTTG GAGTTAGCGG CAGTAGTGAT TGCATTAAAG TAATAGAGCC ATTATCTCTA 60 TGGGGTCAAG TGTGAAGTCT ATACAGATCA TCGTAGTTTA CCATATGTCT TTACTCAGAA 57542 |||| | ||| |||||||||| ||| ||||| |||||||||| | ||||||| |||||||||| TGGGTTTAAG TGTGAAGTCT ATATGGATCA TCGTAGTTTA CAGTATGTCT TTACTCAGAA 120 AGATTTGAAT TTGAGGCGGA GGAGGTGGAT GGAACTATTG AAAGATAATG ATATTACTAT 57602 |||||||||| ||||| | || |||| | ||| ||| ||| || || || ||| |||| ||||| AGATTTGAAT TTGAGACAGA GGAGATCGAT GGAGCTACTG AAGGACTATG ATATCACTAT 180 TTTGTATCAC CTAGGAAAAG CTAATGTTGT GGCAGATGCT TTAAGTAGAA AAGTAGGGAG 57662 |||||||| | ||||| | |||||||||| |||||||||| |||||||||| | | |||||| CTTGTATCAT CCGGGAAAGG CTAATGTTGT GGCAGATGCT TTAAGTAGAA AGGCAGGGAG 240 CATGGGTAGT TTAGCCCACT CACAGGTTTC TAGACGCCCA TTGGCTAGAG AAGTTCAAAC 57722 |||||| ||| |||| |||| |||||||| |||| ||||| |||||||||| | ||||| || CATGGGAAGT CTAGCTCACT TGCAGGTTTC TAGATGCCCA TTGGCTAGAG AGGTTCAGAC 300 TCTGGCTAAT GACTTTATGA GGTTGGAAGT ACTAGAGAAA GGAGGATTTT TTGCTTGTGT 57782 |||||||||| ||| |||||| || | ||| | | ||||| |||| ||||| | |||||||| TCTGGCTAAT GACCTTATGA GGCTAGAATT AAATGAGAAG GGAGAATTTT TGGCTTGTGT 360 GGAGGCAAGA TCTTCTTTTC TTGAAAAGAT TAAGGGAAAT CAGTTTGATG ATGAGAAGCT 57842 |||||||||| ||||| |||| |||| ||||| ||| ||||| |||||| | ||||||| || GGAGGCAAGA TCTTCCTTTC TTGATAAGAT TAAAGGAAAG CAGTTTACCG ATGAGAAACT 420 GAGACGAATT TGAGATATGG TATTGCGAGG AGAGGC-AAA GAGGCAGTAA TTGATGAAGA 57901 || | ||| |||||| || || ||||||| |||||| ||| || ||| || | ||| | || GATCTGGATT CGAGATAAGG TAATGCGAGG AGAGGCTAAA GAAGCAAAAA TCGATAAGGA 480 AGGCATCTTG ATGATTAAGG AAAGGGTATG TGTGCCCCGT GTGGATGATT TGATTCACAC 57961 ||| | ||| | |||||||| || |||||| ||| |||||| | || |||| |||||||||| AGGTGTTTTG AGGATTAAGG GAAAGGTATG TGTACCCCGT GCCGACGATT TGATTCACAC 540 TATTCTTGCA GAGG 57975 ||||||| || |||| TATTCTTACA GAGG 554 hqPGS_C09HBa0047I13.1+_SGN-E352647- (57423 57975) ******************************************************************************** EST sequence 49 -strand 542 n (File: SGN-E353207-) 1 AAAGAAGCAA AAATCGATGA GGAAGGTGTT TTGAGAATAA GGGAAGGAGT ATGTGTACCC 61 CGCGTCGATG ATTTGATTCA CACTATTCTT ATATAGGCTC ATAGTTCGAA GTACTCTATA 121 CATCCTGGTG CAAACAAGAT GTATCGTGAC CTAAAGCAAC ATTTTTGGTG GAGTAGGATG 181 AAGCGTGACA TTGTTAATTT TGTTGCTCAA TGCCCGAATT GTCAGCAAGT AAAGTATGAA 241 CACCAGAGGC CTGGAGGGAC ACTTCAGAGA ATGCCCATTC CTGAATGGAA GTGGGAGAGA 301 ATTGCAATGG ACTTCGTGGT TAGTCATCCA AAGACGATGG GTAGGTATGA CTCTATTTGG 361 GTGATTGTTG ACAGATTAAC TAAGTCTGCT CACTCTATTT CGGTTAAGGT GACTTACAAT 421 GCAGAGAAGT TAGCCAAACT TTACATCTTA GAAATTGTTC GATTGCACGG AGTTCCACTC 481 TCCATCATAT CAGATAGAGG TACGCAATTT ACTTCTAAGT TTTGGAAAAC AGTACATGCC 541 GA Predicted gene structure (within gDNA segment 56243 to 62239): Exon 1 57879 58167 ( 289 n); cDNA 1 288 ( 288 n); score: 0.862 Intron 1 58168 61051 (2884 n); Pd: 0.000 (s: 0.88), Pa: 0.915 (s: 0) Exon 2 61052 61077 ( 26 n); cDNA 289 313 ( 25 n); score: 0.538 MATCH C09HBa0047I13.1+ SGN-E353207- 0.862 315 0.581 C PGS_C09HBa0047I13.1+_SGN-E353207- (57879 58167,61052 61077) Alignment (genomic DNA sequence = upper lines): AAAGAGGCAG TAATTGATGA AGAAGGCATC TTGATGATTA AGGAAAGGGT ATGTGTGCCC 57938 ||||| ||| ||| ||||| ||||| | |||| || | |||| | || |||||| ||| AAAGAAGCAA AAATCGATGA GGAAGGTGTT TTGAGAATAA GGGAAGGAGT ATGTGTACCC 60 CGTGTGGATG ATTTGATTCA CACTATTCTT GCAGAGGCTC ATAGTTCAAG GTATTCTATA 57998 || || |||| |||||||||| |||||||||| | |||||| ||||||| | ||| |||||| CGCGTCGATG ATTTGATTCA CACTATTCTT ATATAGGCTC ATAGTTCGAA GTACTCTATA 120 CATCCTGGTG CAACCAAGAT GTATCATGAT CTAAAGCAAC ATTTTTTGTG GAGTAGAATG 58058 |||||||||| ||| |||||| ||||| ||| |||||||||| |||||| ||| |||||| ||| CATCCTGGTG CAAACAAGAT GTATCGTGAC CTAAAGCAAC ATTTTTGGTG GAGTAGGATG 180 CAGCATGATA TTGTTGATTT TGTTGCCCAA TGCCCGAATT GTCAGCAGGT AAAGTATGAA 58118 ||| ||| | ||||| |||| |||||| ||| |||||||||| ||||||| || |||||||||| AAGCGTGACA TTGTTAATTT TGTTGCTCAA TGCCCGAATT GTCAGCAAGT AAAGTATGAA 240 CACCAGAGGC CCGGAGGGAC ACTTAAGAGA ATGCCCTTTC TAGAATTGGA TTAATTATCG 58178 |||||||||| | |||||||| |||| ||||| |||||| ||| ||| ||| CACCAGAGGC CTGGAGGGAC ACTTCAGAGA ATGCCCATTC CTGAA-TGG. .......... 288 ATTATGAATC AATGATGTAG TTCATTAATT AATTTAAGTA CTCTTTCAAC TCATTGTTTG 58238 .......... .......... .......... .......... .......... .......... 288 GAGTTTCGTT ATTTCTCCTA GTGTCATAAA TTAATTGAAG TGCTCTTTTG TTATTTTGTT 58298 .......... .......... .......... .......... .......... .......... 288 GAATTCATCT ATAGACTTGT AGTTCAGTTT GAACTTTTGT TCCAATTCCT TAATTGTTGT 58358 .......... .......... .......... .......... .......... .......... 288 CGCTTCATAA TAGAATTTTG TTTAATATAG AGCAGTAATG TTGGGCTTGT TTAATCCTAT 58418 .......... .......... .......... .......... .......... .......... 288 TGCATCACAA TAGGGGGTTG GCTTTGCTTG TTACACTTTT TGAGTTCATA ATCTTGCTCT 58478 .......... .......... .......... .......... .......... .......... 288 TTCTTACTTG GCATAAATCT GAAAGTTGCA TGGTTATATT ATCTAAATCA CTTCGCTGCT 58538 .......... .......... .......... .......... .......... .......... 288 GCACGATAAG TTATGGAAAT CTTAGTTAAG TTACCATGGA TTTGAGTCTA GAACAAAGTA 58598 .......... .......... .......... .......... .......... .......... 288 AGTTATGTTT TCTTTTGTTA AGAATGAGTA TTTACTCTAT TCTTGGTTAG TTTCATGACT 58658 .......... .......... .......... .......... .......... .......... 288 TCAATAGGGC CCTAACTTTT CTATGATTAT AATCCAGATG GCTTGGTTAA ATCTTGAGTT 58718 .......... .......... .......... .......... .......... .......... 288 TAAATAGTCA ATGTGTTGGG GTACAAGAAT AAAAATAAAT TGTTCCTCTC TTATTAGTAA 58778 .......... .......... .......... .......... .......... .......... 288 ATATATATTA CTTCAGTTTT AAGTGAAGCG GCAAGTGAAT GTATTCCTAT GTGCATCTCT 58838 .......... .......... .......... .......... .......... .......... 288 TGTTTAAGCT ATGGATTGGT TGACTTGTTA TGTTCTGCAA GGTTCATATC CGTCTTTTGT 58898 .......... .......... .......... .......... .......... .......... 288 TTAAACTTCG TTTTAGTAAG GTTATGAGCT TATATGTCTT CCTATTTGAC TGATCAATAG 58958 .......... .......... .......... .......... .......... .......... 288 ATGGATTTCT TACATTGTAT AGTTTATGTT CTATCAATTA AGATTTTGTT AGTCTTCTGT 59018 .......... .......... .......... .......... .......... .......... 288 TGCCTATAAC TATAAGATTC TGATGGTGTT AGCCACTTTA CCTTTGGATG TTTTCTTGAG 59078 .......... .......... .......... .......... .......... .......... 288 TGAATCTCGA CATCGTGACT TTGTATGATG AGAGATGAAT CGATATATTT ATTCATGATT 59138 .......... .......... .......... .......... .......... .......... 288 AATTATTAAT CCTTTCTTAT TATTTTTGTT GCATGTGAAT CTGTTTGGAG TCCTATTTGG 59198 .......... .......... .......... .......... .......... .......... 288 ACTCAAATAT ACTTTTCCTT GCATCTTCTT ATTGGGTCAG GGAAGCCCAA TTCAACCCTT 59258 .......... .......... .......... .......... .......... .......... 288 TTCGAGATAG ACAACCATCG GAGTGAAGAA TAATTTCCTT GAATTTGGCG TACATGTGTT 59318 .......... .......... .......... .......... .......... .......... 288 CAGAGCATAT ATGTGGGTTT ATATACACTA GTATATATCT AGTGTATACG AAAAGTGGGA 59378 .......... .......... .......... .......... .......... .......... 288 AAACAGGCCT AAAAGCCCCA AATTTTGAAA AAAAAATATT TTGTTATTTG GGGCCTAAGC 59438 .......... .......... .......... .......... .......... .......... 288 CCTTATCATT TTATTTGTTA TTATCTTGTT TGTGAAGGAC ACGTACAAGT GAGCTAAATG 59498 .......... .......... .......... .......... .......... .......... 288 GCCTTACATG AAATCAGTGG CCTAAGCGAA CAGAAACCAG ACTTCGACTA AATTTCCTCT 59558 .......... .......... .......... .......... .......... .......... 288 CTCCTTTTAG TATATTTCGT TTGAAAAACG CATAAGTACC CCTCCCCCCA CAAACCTATA 59618 .......... .......... .......... .......... .......... .......... 288 CCCGAAATCC CAGAGACACA CTTATACTAT ACTAAGATCA TATTACCCCT GAACTTATTT 59678 .......... .......... .......... .......... .......... .......... 288 TATGAATAAT TTTCTACCCC TTTTCGGCCT ACGTGGCACT AGCTTGGGAA AGAATGTCAA 59738 .......... .......... .......... .......... .......... .......... 288 CACTTTCTGG GCCCACAAGA TACTGCCACG TAGGCTGAAA AGGGTAAAAA ATTATTTATA 59798 .......... .......... .......... .......... .......... .......... 288 AAATAATTTC AAGGGGGTAA TAGGACCATA GTGTAGAATA AGTGTGTCTC TGATATTTGG 59858 .......... .......... .......... .......... .......... .......... 288 AGGAGGGAGG TACTTGTGCA TTATCCCTAT TTCGTGTTAA TTCTATTATT AGTATATGCT 59918 .......... .......... .......... .......... .......... .......... 288 TACTTGCTAA TTAATTTTAA GGTTCTTAAC TCTTAATTCC TCAAAGGACA CACATTTTGA 59978 .......... .......... .......... .......... .......... .......... 288 GTTAGTTAAC GTATACTACT TTATCTTAAA AGATCTAAGT ATACTTGTCT TTCCAAATTA 60038 .......... .......... .......... .......... .......... .......... 288 ATTTCTAAAA ATTTAGAAGT TTTTCTCTAC TTAGACATGT TAGATAATAT AATTCCTTTT 60098 .......... .......... .......... .......... .......... .......... 288 CCTCTCTAAT TAATTTTAAG TTATAAAATT TGCTTATTTC GTAATGGTCA AACATTCCTA 60158 .......... .......... .......... .......... .......... .......... 288 TTGTTAGCCA AACAAGTTAA TTGTCGGATA ACCACATTAG TAGATATATT AGTTGCTTCT 60218 .......... .......... .......... .......... .......... .......... 288 AATACCTTCC TATAATATTA ATAAGAACCT CGGACCCCTT CAAATATTTT CAATTGATTC 60278 .......... .......... .......... .......... .......... .......... 288 CCTGTTTAAT CAGTTGAAAA TTAGTTTTCT TAATTTCCCT TTAAAAATTA AGTGGTGACT 60338 .......... .......... .......... .......... .......... .......... 288 CTAAAACCAA TCAGTCTTTA ATTATTTTTT AAATAGAACA CCCTTCATTA ACCTATTGAG 60398 .......... .......... .......... .......... .......... .......... 288 ATAAAAATAC CCCTCAATCC ACTTATTTGG TCCATTTCTA CACTTAAAAT TAACCCCTTC 60458 .......... .......... .......... .......... .......... .......... 288 TTTAAAGAGA ATATTATTAT TATTATTGAT TGCATGTCAT TTTCTTATTG GATAAACTAA 60518 .......... .......... .......... .......... .......... .......... 288 ATACCAAATC ATTTAATTTC TCCATACCCG CTCCGACCCA TTCCAATGCC CATTTCCCGA 60578 .......... .......... .......... .......... .......... .......... 288 ACCCAATTGA AAGACGCATG GATTGATCGC TCTTTCTTTG TATCTTTAAT CCCAATAGCT 60638 .......... .......... .......... .......... .......... .......... 288 CTTTCTTCTT CCCTCTTATA GTTTCAAATC AAATTAGTTT CGAATTTTTA GTATAAATAT 60698 .......... .......... .......... .......... .......... .......... 288 GAAGGAGTAT TAATTTTGAA AGTCTTCTGT CCATTAAAAT ATCTGAATCT TCTTCTGCTT 60758 .......... .......... .......... .......... .......... .......... 288 CTTGTTGTGA TGAAAGATAG CCCCGCATAT GTCATTGAGG TGATTGAGTT GAGATGCCAA 60818 .......... .......... .......... .......... .......... .......... 288 TTATTTTAGA GAAAGATTCC TCGAATAAAT GCAACCTAAA TAAAGAGTAG AAAGGAAAGG 60878 .......... .......... .......... .......... .......... .......... 288 TAGGCCACCC ACCCTAATAT TGGTGTTAAA AAAAGGTATG GTATCGATAG ATAACACTTT 60938 .......... .......... .......... .......... .......... .......... 288 AGATATATAC TACATAAACT TCACTGTACG TGGACTTGTG TAACACTTGC ATATTTAGTC 60998 .......... .......... .......... .......... .......... .......... 288 AATTTGTGTC CTTGAGGATT ACATAATGTG ATAATTTCTT CTTGTGTTTT TAGAAATTGA 61058 || | | .......... .......... .......... .......... .......... ...AAGTGGG 295 CAACACCATC AAATGAACT 61077 | | | |||| ||| AGAGA-ATTG CAATGGACT 313 hqPGS_C09HBa0047I13.1+_SGN-E353207- (57879 58167) ******************************************************************************** EST sequence 14 +strand 858 n (File: SGN-E540411+) 1 TTTTTTTTTT CTCATAAACA TAAAGTACAC TAATATTATT ATTATAAAAT TCTCCAGTCT 61 TATACAAAAC AACATATGAC TTCACTTGAA CTATAATTAA AGAACAATAA AGGGATAATG 121 CACAAGTACC CCCTCAACCT ATGCCCGAAA TTCCAGAGAC ACACTTATAC TATACTAAGG 181 TCCTATTACC CCCCTGAACT TATTTTATAA GTAATTTTCT ACCCCTTTTT AGCCTACGTG 241 GCACTAGTTT AAAAAAAAAG TCAACAACCA TTGGGCCCAC AAGATAGTGC CACGTAGGTC 301 TAAAAGGGGT AAAAAATTAT TAATAAATAA GTTCAGGGGG TAATAAGATC TTAGTATGGT 361 ATAAGTGTAT CTCTGAGATT TTGGACATAG GCTAAGGGGG TACTTGGACA TTATCCCAAC 421 AATAAATAAA GGATATAACA TGATTCAAAA GACAACACGT GATAACCACT TCTACAACTT 481 GTGCATGATC AATTGAGCAC CATATTGAGG TTGAAGCAAC AATGGGTGAG GAGCATGAGC 541 ATAAGATGGA GAGAGTTCAA ATGCATAATG TTTTAGAATC ATGACCATTG CCATTTTTGC 601 CTCTAACATA GCAAAATTTT GCCCAATACA TATTCTTGGA CCCCAACTAA ATGGAAAAAA 661 TACAACTTGT CCTTTTGTTG CTTTTGATAT TCCTTCACTA AATCTCTCTG GCATAAACTC 721 CATTGCATCA TCTCCCCATA TTTCAGTATC ATGATGCACT AACATTGTTG CCAATATGAG 781 TTGGACCCCA GAGGGTAACA CAAATCCCCT AACTTTGTTT CTGTATTCAC CATGCGATTA 841 ATCGCGTATA CTGATGTA Predicted gene structure (within gDNA segment 56308 to 66440): Exon 1 57353 57363 ( 11 n); cDNA 116 126 ( 11 n); score: 0.727 Intron 1 57364 59600 (2237 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.90) Exon 2 59601 59867 ( 267 n); cDNA 127 393 ( 267 n); score: 0.801 Intron 2 59868 60982 (1115 n); Pd: 0.959 (s: 0.66), Pa: 0.000 (s: 0) Exon 3 60983 61003 ( 21 n); cDNA 394 414 ( 21 n); score: 0.524 Intron 3 61004 61285 ( 282 n); Pd: 0.900 (s: 0), Pa: 0.108 (s: 0) Exon 4 61286 61305 ( 20 n); cDNA 415 432 ( 18 n); score: 0.800 Intron 4 61306 64644 (3339 n); Pd: 0.000 (s: 0), Pa: 0.870 (s: 0) Exon 5 64645 64655 ( 11 n); cDNA 433 444 ( 12 n); score: 0.682 Intron 5 64656 65236 ( 581 n); Pd: 0.000 (s: 0), Pa: 0.812 (s: 0) Exon 6 65237 65248 ( 12 n); cDNA 445 455 ( 11 n); score: 0.917 PPA cDNA 12 1 MATCH C09HBa0047I13.1+ SGN-E540411+ 0.801 342 0.399 C PGS_C09HBa0047I13.1+_SGN-E540411+ (57353 57363,59601 59867,60983 61003,61286 61305,64645 64655,65237 65248) Alignment (genomic DNA sequence = upper lines): TAATGTAGGA GAGGAATGTA ATTACTTATG CTTCGAGGCA ATTGAAAGTG CATGAACATA 57412 ||||| | | | TAATGCACAA G......... .......... .......... .......... .......... 126 ACTATCCAAC CCATGATTTG GATTTGGCTG CAGTTGTATT TGCATTAAAG CAATGGAGAC 57472 .......... .......... .......... .......... .......... .......... 126 ATTATCTATA TGGGGTCAAG TGTGAAGTCT ATACAGATCA TCGTAGTTTA CCATATGTCT 57532 .......... .......... .......... .......... .......... .......... 126 TTACTCAGAA AGATTTGAAT TTGAGGCGGA GGAGGTGGAT GGAACTATTG AAAGATAATG 57592 .......... .......... .......... .......... .......... .......... 126 ATATTACTAT TTTGTATCAC CTAGGAAAAG CTAATGTTGT GGCAGATGCT TTAAGTAGAA 57652 .......... .......... .......... .......... .......... .......... 126 AAGTAGGGAG CATGGGTAGT TTAGCCCACT CACAGGTTTC TAGACGCCCA TTGGCTAGAG 57712 .......... .......... .......... .......... .......... .......... 126 AAGTTCAAAC TCTGGCTAAT GACTTTATGA GGTTGGAAGT ACTAGAGAAA GGAGGATTTT 57772 .......... .......... .......... .......... .......... .......... 126 TTGCTTGTGT GGAGGCAAGA TCTTCTTTTC TTGAAAAGAT TAAGGGAAAT CAGTTTGATG 57832 .......... .......... .......... .......... .......... .......... 126 ATGAGAAGCT GAGACGAATT TGAGATATGG TATTGCGAGG AGAGGCAAAG AGGCAGTAAT 57892 .......... .......... .......... .......... .......... .......... 126 TGATGAAGAA GGCATCTTGA TGATTAAGGA AAGGGTATGT GTGCCCCGTG TGGATGATTT 57952 .......... .......... .......... .......... .......... .......... 126 GATTCACACT ATTCTTGCAG AGGCTCATAG TTCAAGGTAT TCTATACATC CTGGTGCAAC 58012 .......... .......... .......... .......... .......... .......... 126 CAAGATGTAT CATGATCTAA AGCAACATTT TTTGTGGAGT AGAATGCAGC ATGATATTGT 58072 .......... .......... .......... .......... .......... .......... 126 TGATTTTGTT GCCCAATGCC CGAATTGTCA GCAGGTAAAG TATGAACACC AGAGGCCCGG 58132 .......... .......... .......... .......... .......... .......... 126 AGGGACACTT AAGAGAATGC CCTTTCTAGA ATTGGATTAA TTATCGATTA TGAATCAATG 58192 .......... .......... .......... .......... .......... .......... 126 ATGTAGTTCA TTAATTAATT TAAGTACTCT TTCAACTCAT TGTTTGGAGT TTCGTTATTT 58252 .......... .......... .......... .......... .......... .......... 126 CTCCTAGTGT CATAAATTAA TTGAAGTGCT CTTTTGTTAT TTTGTTGAAT TCATCTATAG 58312 .......... .......... .......... .......... .......... .......... 126 ACTTGTAGTT CAGTTTGAAC TTTTGTTCCA ATTCCTTAAT TGTTGTCGCT TCATAATAGA 58372 .......... .......... .......... .......... .......... .......... 126 ATTTTGTTTA ATATAGAGCA GTAATGTTGG GCTTGTTTAA TCCTATTGCA TCACAATAGG 58432 .......... .......... .......... .......... .......... .......... 126 GGGTTGGCTT TGCTTGTTAC ACTTTTTGAG TTCATAATCT TGCTCTTTCT TACTTGGCAT 58492 .......... .......... .......... .......... .......... .......... 126 AAATCTGAAA GTTGCATGGT TATATTATCT AAATCACTTC GCTGCTGCAC GATAAGTTAT 58552 .......... .......... .......... .......... .......... .......... 126 GGAAATCTTA GTTAAGTTAC CATGGATTTG AGTCTAGAAC AAAGTAAGTT ATGTTTTCTT 58612 .......... .......... .......... .......... .......... .......... 126 TTGTTAAGAA TGAGTATTTA CTCTATTCTT GGTTAGTTTC ATGACTTCAA TAGGGCCCTA 58672 .......... .......... .......... .......... .......... .......... 126 ACTTTTCTAT GATTATAATC CAGATGGCTT GGTTAAATCT TGAGTTTAAA TAGTCAATGT 58732 .......... .......... .......... .......... .......... .......... 126 GTTGGGGTAC AAGAATAAAA ATAAATTGTT CCTCTCTTAT TAGTAAATAT ATATTACTTC 58792 .......... .......... .......... .......... .......... .......... 126 AGTTTTAAGT GAAGCGGCAA GTGAATGTAT TCCTATGTGC ATCTCTTGTT TAAGCTATGG 58852 .......... .......... .......... .......... .......... .......... 126 ATTGGTTGAC TTGTTATGTT CTGCAAGGTT CATATCCGTC TTTTGTTTAA ACTTCGTTTT 58912 .......... .......... .......... .......... .......... .......... 126 AGTAAGGTTA TGAGCTTATA TGTCTTCCTA TTTGACTGAT CAATAGATGG ATTTCTTACA 58972 .......... .......... .......... .......... .......... .......... 126 TTGTATAGTT TATGTTCTAT CAATTAAGAT TTTGTTAGTC TTCTGTTGCC TATAACTATA 59032 .......... .......... .......... .......... .......... .......... 126 AGATTCTGAT GGTGTTAGCC ACTTTACCTT TGGATGTTTT CTTGAGTGAA TCTCGACATC 59092 .......... .......... .......... .......... .......... .......... 126 GTGACTTTGT ATGATGAGAG ATGAATCGAT ATATTTATTC ATGATTAATT ATTAATCCTT 59152 .......... .......... .......... .......... .......... .......... 126 TCTTATTATT TTTGTTGCAT GTGAATCTGT TTGGAGTCCT ATTTGGACTC AAATATACTT 59212 .......... .......... .......... .......... .......... .......... 126 TTCCTTGCAT CTTCTTATTG GGTCAGGGAA GCCCAATTCA ACCCTTTTCG AGATAGACAA 59272 .......... .......... .......... .......... .......... .......... 126 CCATCGGAGT GAAGAATAAT TTCCTTGAAT TTGGCGTACA TGTGTTCAGA GCATATATGT 59332 .......... .......... .......... .......... .......... .......... 126 GGGTTTATAT ACACTAGTAT ATATCTAGTG TATACGAAAA GTGGGAAAAC AGGCCTAAAA 59392 .......... .......... .......... .......... .......... .......... 126 GCCCCAAATT TTGAAAAAAA AATATTTTGT TATTTGGGGC CTAAGCCCTT ATCATTTTAT 59452 .......... .......... .......... .......... .......... .......... 126 TTGTTATTAT CTTGTTTGTG AAGGACACGT ACAAGTGAGC TAAATGGCCT TACATGAAAT 59512 .......... .......... .......... .......... .......... .......... 126 CAGTGGCCTA AGCGAACAGA AACCAGACTT CGACTAAATT TCCTCTCTCC TTTTAGTATA 59572 .......... .......... .......... .......... .......... .......... 126 TTTCGTTTGA AAAACGCATA AGTACCCCTC CCCCCACAAA CCTATACCCG AAATCCCAGA 59632 | ||||| | || ||||| |||| |||| ||||| .......... .......... ........TA CCCCCTC-AA CCTATGCCCG AAATTCCAGA 157 GACACACTTA TACTATACTA AGATCATATT A--CCCCTGA ACTTATTTTA TGAATAATTT 59690 |||||||||| |||||||||| || || |||| | ||||||| |||||||||| | | |||||| GACACACTTA TACTATACTA AGGTCCTATT ACCCCCCTGA ACTTATTTTA TAAGTAATTT 217 TCTACCCCTT TTCGGCCTAC GTGGCACTAG CTTGGGAAAG AATGTCAACA CTTTCTGGGC 59750 |||||||||| || |||||| |||||||||| || ||| || ||||||| ||||| TCTACCCCTT TTTAGCCTAC GTGGCACTAG -TTTAAAAAA AAAGTCAACA ACCATTGGGC 276 CCACAAGATA CTGCCACGTA GG-CTGAAAA GGGTAAAAAA TTATTTATAA AATAATTTCA 59809 |||||||||| ||||||||| || || ||| |||||||||| ||||| || | ||||| ||| CCACAAGATA GTGCCACGTA GGTCTAAAAG GGGTAAAAAA TTATTAAT-A AATAAGTTC- 334 AGGGGGTAAT AGGACCATAG TGTAGAATAA GTGTGTCTCT GATA-TTTGG AGGAGGGAGG 59868 |||||||||| | || | ||| | | | |||| |||| ||||| || | ||||| | || AGGGGGTAAT AAGATCTTAG TATGGTATAA GTGTATCTCT GAGATTTTGG ACATAGGCT. 393 TACTTGTGCA TTATCCCTAT TTCGTGTTAA TTCTATTATT AGTATATGCT TACTTGCTAA 59928 .......... .......... .......... .......... .......... .......... 393 TTAATTTTAA GGTTCTTAAC TCTTAATTCC TCAAAGGACA CACATTTTGA GTTAGTTAAC 59988 .......... .......... .......... .......... .......... .......... 393 GTATACTACT TTATCTTAAA AGATCTAAGT ATACTTGTCT TTCCAAATTA ATTTCTAAAA 60048 .......... .......... .......... .......... .......... .......... 393 ATTTAGAAGT TTTTCTCTAC TTAGACATGT TAGATAATAT AATTCCTTTT CCTCTCTAAT 60108 .......... .......... .......... .......... .......... .......... 393 TAATTTTAAG TTATAAAATT TGCTTATTTC GTAATGGTCA AACATTCCTA TTGTTAGCCA 60168 .......... .......... .......... .......... .......... .......... 393 AACAAGTTAA TTGTCGGATA ACCACATTAG TAGATATATT AGTTGCTTCT AATACCTTCC 60228 .......... .......... .......... .......... .......... .......... 393 TATAATATTA ATAAGAACCT CGGACCCCTT CAAATATTTT CAATTGATTC CCTGTTTAAT 60288 .......... .......... .......... .......... .......... .......... 393 CAGTTGAAAA TTAGTTTTCT TAATTTCCCT TTAAAAATTA AGTGGTGACT CTAAAACCAA 60348 .......... .......... .......... .......... .......... .......... 393 TCAGTCTTTA ATTATTTTTT AAATAGAACA CCCTTCATTA ACCTATTGAG ATAAAAATAC 60408 .......... .......... .......... .......... .......... .......... 393 CCCTCAATCC ACTTATTTGG TCCATTTCTA CACTTAAAAT TAACCCCTTC TTTAAAGAGA 60468 .......... .......... .......... .......... .......... .......... 393 ATATTATTAT TATTATTGAT TGCATGTCAT TTTCTTATTG GATAAACTAA ATACCAAATC 60528 .......... .......... .......... .......... .......... .......... 393 ATTTAATTTC TCCATACCCG CTCCGACCCA TTCCAATGCC CATTTCCCGA ACCCAATTGA 60588 .......... .......... .......... .......... .......... .......... 393 AAGACGCATG GATTGATCGC TCTTTCTTTG TATCTTTAAT CCCAATAGCT CTTTCTTCTT 60648 .......... .......... .......... .......... .......... .......... 393 CCCTCTTATA GTTTCAAATC AAATTAGTTT CGAATTTTTA GTATAAATAT GAAGGAGTAT 60708 .......... .......... .......... .......... .......... .......... 393 TAATTTTGAA AGTCTTCTGT CCATTAAAAT ATCTGAATCT TCTTCTGCTT CTTGTTGTGA 60768 .......... .......... .......... .......... .......... .......... 393 TGAAAGATAG CCCCGCATAT GTCATTGAGG TGATTGAGTT GAGATGCCAA TTATTTTAGA 60828 .......... .......... .......... .......... .......... .......... 393 GAAAGATTCC TCGAATAAAT GCAACCTAAA TAAAGAGTAG AAAGGAAAGG TAGGCCACCC 60888 .......... .......... .......... .......... .......... .......... 393 ACCCTAATAT TGGTGTTAAA AAAAGGTATG GTATCGATAG ATAACACTTT AGATATATAC 60948 .......... .......... .......... .......... .......... .......... 393 TACATAAACT TCACTGTACG TGGACTTGTG TAACACTTGC ATATTTAGTC AATTTGTGTC 61008 | | || || | | | | | .......... .......... .......... ....AAGGGG GTACTTGGAC ATTAT..... 414 CTTGAGGATT ACATAATGTG ATAATTTCTT CTTGTGTTTT TAGAAATTGA CAACACCATC 61068 .......... .......... .......... .......... .......... .......... 414 AAATGAACTG TGGTAAACCA CTAAACTAGA TTTGCTAAAA GTTACTGCTA TCAATGTCTG 61128 .......... .......... .......... .......... .......... .......... 414 GATAGCATTT AAGTATGATA TTTCTCAGCA TTAACTAAGT CTTTAATACA TATAGATTCA 61188 .......... .......... .......... .......... .......... .......... 414 ACATGTATCT TAGATAACAC TAATTAACAA TTCATTACCA AATAAGTTAA TTTCAAAATA 61248 .......... .......... .......... .......... .......... .......... 414 ACTTACTCTG TCACAATGTA TTTCACCCTA TTTTAAGCAC AACAAAAAAT ATTAAGGGCA 61308 | | ||||| |||| | |||| .......... .......... .......... .......CCC AACAATAAAT A--AAGG... 432 AGAGTGGCTC AAGCATATTT GTGGCCTAAA GCAATAATTA AACGGGGCAT TAAACTTAAA 61368 .......... .......... .......... .......... .......... .......... 432 TTATTAATAA CTTTTATCTA ATTGGTTTCC TCTAGTTTTA ATTCATAATA TAACCATACT 61428 .......... .......... .......... .......... .......... .......... 432 TATTTTAAAT TAGTTTTCAT AAGATATAGT ACTCCAAATA TGTCAACTTT CTTATATAGT 61488 .......... .......... .......... .......... .......... .......... 432 TCCTTAATTT TACATGAAAA GTTTACTTTT TCTACAAATA GTATATAATA TTTGTTAAAA 61548 .......... .......... .......... .......... .......... .......... 432 AATAATAACA TATAACATAT TATTTTTAAA AATGAGGCCC CTTAAATTTG GGGGCCTTAA 61608 .......... .......... .......... .......... .......... .......... 432 GCACATGTCC TTTTTTAACA CTGTCGAGCC ACCCCTGATT AAGGGTGAAT AAACACAAGA 61668 .......... .......... .......... .......... .......... .......... 432 ATATTCAACT ACTAAGCAAA GTCTTGAATT AGTCACTACA AAAACATGTT TAATTCTCCT 61728 .......... .......... .......... .......... .......... .......... 432 AAAATTTATC TAATGCTAGC CTTGTTAGCC TTCAATTTTT TTGTCGAAGC CTAGTCTTAG 61788 .......... .......... .......... .......... .......... .......... 432 ATTTAGATAT CGCCTTTGGC CTCAAAATTG GCTCGCCATC TTCATCTTCA TTTTCCTCTT 61848 .......... .......... .......... .......... .......... .......... 432 TACCTTCCTC GCCTATTCAT CATCAACAAA TTGTTGTACT TGTTCAGAAA TTTGACTCTC 61908 .......... .......... .......... .......... .......... .......... 432 TCGTGGTGCT GTTAAGGGAA CATCTTGCAT TTCCTAGAAA GATAATCCAC CAAGAATCTT 61968 .......... .......... .......... .......... .......... .......... 432 CATCTTTCTA TTCACATACT AAAATAATCA TATGAAAGTT TCACCAAATC TAAACAAAAA 62028 .......... .......... .......... .......... .......... .......... 432 TAAAAATAAG AATACTTTCA ATTAATAAAA TTCTTGATAA AGAAAAGATT TCCAAAATCA 62088 .......... .......... .......... .......... .......... .......... 432 ACACTATCAC TTGAATAACT TGAATGCTTC AACTTCAAGT TAGTGTTGCA CTGAAAAATT 62148 .......... .......... .......... .......... .......... .......... 432 TTATCATTTG ATGGAAATTA ATGTTGAAAC TGTTAAAGAA GAAAAAGCTA TTTGGGTTAA 62208 .......... .......... .......... .......... .......... .......... 432 AGGGAGAAAG AAAGAGTGGT CAATCCACGA GTCTTTTAAT TGGGGTTGGG GTTGTGGCAC 62268 .......... .......... .......... .......... .......... .......... 432 CGGAAGGAAG AGGTTCCTGT TGAGATACAG ATTATTTAGC TTCTAAATTA ATGAGCAAGT 62328 .......... .......... .......... .......... .......... .......... 432 CGGCTTAGCT GGCAGATTAG TTTCAATTAG TTAATAGTTA GTTATTTCTT ATTGTGTTAG 62388 .......... .......... .......... .......... .......... .......... 432 TTAGCTTTAT TTACAGCAAT TACTTGTGAT TAGAGAATTA CACACTTGTA TAAATTGTAA 62448 .......... .......... .......... .......... .......... .......... 432 GTTTGCAGAT GAGATAATTC AATTTTTTCA TTTTATGAAT TACTCCTGAT CGATCTTAGA 62508 .......... .......... .......... .......... .......... .......... 432 GCTCTGCTCT TCTCCTCCAT TTTCTTTCTT CTCGAAGATT CTTCAATAGA GAACTGAAAT 62568 .......... .......... .......... .......... .......... .......... 432 TCTCCACAAC TTCTCCATAA TCGACATAGT ATTTGAGCAG TAAGGTTCGT CTTCTGCTCG 62628 .......... .......... .......... .......... .......... .......... 432 TCTTTTCCGC ACTCATTCTC CTCTAAGTTT CATCTTAATT TCTAGCAATC ATGGAACACA 62688 .......... .......... .......... .......... .......... .......... 432 ATATCGATCA GGAACCTGCT GTACAAATTC CAGTTCAGAA CCTTGCTGCA GGTATATCTA 62748 .......... .......... .......... .......... .......... .......... 432 ACAATGCTTT CTACATGCAT CCATCTGAAA GTGCCGGATC TGCTATTGTT CCACTCGTTT 62808 .......... .......... .......... .......... .......... .......... 432 TTTAAGGAAC GGGTTATCAT TCATGGGGAC GGGGAATTCT TCAATCTCAG TCAGTAAAGA 62868 .......... .......... .......... .......... .......... .......... 432 ATAAGACTGG TTTTATCAAT GGGAAAATTG CAAGTCCATC TCCAGATTCA GCTGCTTTTG 62928 .......... .......... .......... .......... .......... .......... 432 CCTTGTGGCA ACGATGTGAT GATATGGTCA CTTCGTGGTT TTTTAATTCA CTACCAAAAG 62988 .......... .......... .......... .......... .......... .......... 432 ACCTTGCCGA CAACCTGCAG TATGTCAATA ACGCAAAGGC ACTTTGGGAT GAACTTATCT 63048 .......... .......... .......... .......... .......... .......... 432 GACAGGTACG ATCAAGCTAA TGGTGCTAAA TTGTATTTAT TGCATTGTGA AATCAATGGA 63108 .......... .......... .......... .......... .......... .......... 432 CTCACTCAAG ATAATCTCGA TGTTACTAGT TACTACACCA AAATGCGAAA ATTGTGAGAA 63168 .......... .......... .......... .......... .......... .......... 432 GAACTTAGCA CCCAAGACAC TAATTCTCAG TGACATGTTT GTGCACTTGT GGTGGAAAGT 63228 .......... .......... .......... .......... .......... .......... 432 TGAAGATGCA TAACGCTCAG TAAGACAGAC GCCTCATTCA ATTCCTTATG GTTAAATGAG 63288 .......... .......... .......... .......... .......... .......... 432 GTATACATGA TAGTTCGAGG TAGCATATTG ATTATGACTC CCCTGCCTAC CATGGCTCAG 63348 .......... .......... .......... .......... .......... .......... 432 GCTTTTTCTA TTTTAGCATA GGAAGAAAGG CCCAGAGAGG TCAAACCTCA TGGCAAGCTC 63408 .......... .......... .......... .......... .......... .......... 432 AATTTTGATT CCACTTCCCT TCATGTGAAT GTTGCTGCCA GTTCTAGCAC AAATTTCAGG 63468 .......... .......... .......... .......... .......... .......... 432 ACAAACTATG CTTCTTCGTC CTCTAAGGGA AATGGGGGAA ATAAGCCTAC TAATAGGTCA 63528 .......... .......... .......... .......... .......... .......... 432 AATATCTTCG GTGAGTACTG CAAAAATGTT GGACACGCGA AGGATAAGTG TTATAAACTT 63588 .......... .......... .......... .......... .......... .......... 432 TCATGGTTTC CCATTGGATT TAAAGTTCAT AAAAGGTAAA ACTGCTTTAG GGACATCAGT 63648 .......... .......... .......... .......... .......... .......... 432 TGTTGTTCAT GGTTCTCGTG ATAATGACAA AGGAAAGGGC CTTGAAGGTA GTGAAGACAG 63708 .......... .......... .......... .......... .......... .......... 432 ATATGTACCT GACATGAGGA ATACAACTAT AACCAAGCAG CAAATTGATC AGTTGGTTAG 63768 .......... .......... .......... .......... .......... .......... 432 AATCTTAGAA CACATTCAGA CTCAGGGAGG AAACAACACT AGAAATTAAT CTAGAGAAAT 63828 .......... .......... .......... .......... .......... .......... 432 TTCAAACATT GCAAGTGAAG CTGAGAATTT TCCAGGTACT CTAACCTGTT TTTCTTCAAT 63888 .......... .......... .......... .......... .......... .......... 432 TACTGATATT GGTTGTTTGT CATGTATTGT CAAATAATTC ATGGATCATA GATTCTGGGG 63948 .......... .......... .......... .......... .......... .......... 432 CCTCAAACCA CATGACCTTC GATAAAACAT TATTAATCAA CATTATACCA TTACCATACC 64008 .......... .......... .......... .......... .......... .......... 432 CTTTTTTAGT TACCTACCAA ATGGCTATAG AGTAAAAGTG ACAGAAATTG GTGATGCATG 64068 .......... .......... .......... .......... .......... .......... 432 TCTGAATTCT TCATTAACTT TGCATAAACT TCTGTTTGTA CATAGTTTTA AGTTCAATCT 64128 .......... .......... .......... .......... .......... .......... 432 GATATCCGTT CATTCCTTAG TTTCTCATGA TAAAAGAGTG ATCAGTTTCA ACTCTTTTTC 64188 .......... .......... .......... .......... .......... .......... 432 TTGTTTAATG CAGGGCCCTT CAATGAAGAG CCCTCTAGAG ATTGGTAGAG CACATAATGG 64248 .......... .......... .......... .......... .......... .......... 432 ACTATATTTC TTGTGTTCAA AATGTCACAT TCCTTTCCCT AACTCCAATG TCCTAAATGT 64308 .......... .......... .......... .......... .......... .......... 432 TGGATCACAC AACAAAATCT CATTTGTTCA TTCTAGTTTA CATTCTGTTT CTAGTAGTCC 64368 .......... .......... .......... .......... .......... .......... 432 TAGTTTATTT TCTAATTCTG CAATTCCAAA TTCCTTTTCA TGTAATTCGT TGTCTGATGT 64428 .......... .......... .......... .......... .......... .......... 432 TGCTATTTTG CCTTGTAATG AAAGATCATC TACTGGTATG AATTTAAATT TTTATAATCC 64488 .......... .......... .......... .......... .......... .......... 432 TCTCATGTCA TGCATGTCTC ATGGAAACAG TACTGATTAT TTATGGCATA ACAGACTAGG 64548 .......... .......... .......... .......... .......... .......... 432 CCATGTGTCC TTTATCAAAA TGAAAGGAAT CTCCTCTATT CATATATCCT TCTCACCAAA 64608 .......... .......... .......... .......... .......... .......... 432 AAAACATTTT GTGTGCACTG TTTGTCCCAT GGACAGATA- AACACGATCA TATTTCCAAT 64667 ||| |||| ||| .......... .......... .......... ......ATAT AACATGAT.. .......... 444 AAAAAACACC ACTTCCAGCA ATAGATTTTT TGACCTTCTT CGTCTTGATT TGTGGGAACC 64727 .......... .......... .......... .......... .......... .......... 444 CTACCATGTA CTTACTCATA ATGGCTATAA ATACTTCTTG ATGATTGTTG ATGACTTTAG 64787 .......... .......... .......... .......... .......... .......... 444 TAGGTCTACG TGGACTCAAC TTCTTACTTG CAAAAGTAAC ACCCTCCAAA CCATAAAGTC 64847 .......... .......... .......... .......... .......... .......... 444 TTTTGTGTCC CTTGTAGGAA ACCAATTCAG AGTTACTATT AAGTCTATTA GAACTTATAA 64907 .......... .......... .......... .......... .......... .......... 444 TGGATTAGAA TTCATCAGCC ATGAGACAAA TATTTACCTT AAAAAAAAAA GGAAAAATAC 64967 .......... .......... .......... .......... .......... .......... 444 ACCAAAGATC ATGTCCATAC GCACCAACAA AATGGTGAGG TTGAGAGAAA ACACAAACAT 65027 .......... .......... .......... .......... .......... .......... 444 CTTCTTGAAG TTGCTAGAGC ATTACTATAC CAATCAAAAC TACCTGCTAG ATATTGGGGA 65087 .......... .......... .......... .......... .......... .......... 444 GAGTGTATCC TTACAACAAC CTATTTGATA AACAGACTAA CTAACTCAGT TCTCCATAAC 65147 .......... .......... .......... .......... .......... .......... 444 AAAAATCATT TTCAAGTGTT GTATAATAAA TAACCTGCTT ACTCTTACCT TAAAGTTTTT 65207 .......... .......... .......... .......... .......... .......... 444 GGGTGCCTTT GTTTTCCTAC TCTCAACAGT CACAAAGACA A 65248 | || ||||||| | .......... .......... .........T CA-AAAGACA A 455 hqPGS_C09HBa0047I13.1+_SGN-E540411+ (59601 59867) ******************************************************************************** EST sequence 21 -strand 651 n (File: SGN-E394141-) 1 CAATTATATA ATTCACAATT GTATAATTCG TTGGCCTTTT TCTTTGCAAT ATTTGAAGTA 61 AAATGTTTGT AATTTGTATA ATTAAGTGTA TAACACGAAG ATATATATTT TTACATGTGT 121 ATATACAATT TTCTCTCGCT TTATACAAAA TAGAAACAGA ATTTATACAC TTCTGTGTAT 181 ATAGCGAGAT AGGCGAGCGA GAATGGAGAG TGGCGAGCGA GATTTTTGGG AGGGAGACGC 241 CTGACAAACT TTAGCTAACG TTTGCTATGG AGCACAATTA AATCAAACTC TAGCTACTCC 301 ATTTAGTTAG ATTACTAGTT TGCTATTATA TACAATTTTC CCAAGAGCTT GTATAAAATG 361 GAGAGAAGGA AAAAGATTTA GAATTATCGC TTGTGAATGA CAAGAAAAGA TTGCAAAATA 421 AGAATTTAGT TGTTTTGCTT TAATAAGTTC CTTAATCATT TCATTAGGGG TGTAATAATA 481 GAATAAGAAA AGGGGCTTGA AATTCAGCTA TAAACAACCA GGGCATAGGT AACGTGTATA 541 CTTGATGTTA TAGGTGAAAT TTCAGCTTCT CAATTTCGAT TAATTAACAT TAAAAAGATA 601 TATATATATT CCCCCAGTAT CACATTGATA GAAAAAAAAA AAAAAAAAAA A Predicted gene structure (within gDNA segment 71756 to 65199): Exon 1 70923 70906 ( 18 n); cDNA 1 18 ( 18 n); score: 0.833 Intron 1 70905 70693 ( 213 n); Pd: 0.670 (s: 0), Pa: 0.000 (s: 0) Exon 2 70692 70657 ( 36 n); cDNA 19 54 ( 36 n); score: 0.917 Intron 2 70656 70625 ( 32 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.98) Exon 3 70624 70316 ( 309 n); cDNA 55 344 ( 290 n); score: 0.828 Intron 3 70315 67827 (2489 n); Pd: 0.000 (s: 0.86), Pa: 0.863 (s: 0) Exon 4 67826 67797 ( 30 n); cDNA 345 374 ( 30 n); score: 0.567 PPA cDNA 632 651 MATCH C09HBa0047I13.1- SGN-E394141- 0.828 393 0.604 C PGS_C09HBa0047I13.1-_SGN-E394141- (70923 70906,70692 70657,70624 70316,67826 67797) Alignment (genomic DNA sequence = upper lines): CAATTGTATA ATTCACTGGC CTAAATTGTA TAATTCGCTT CCTATTTCGC TGCAATATTT 70864 ||||| |||| |||||| CAATTATATA ATTCACAA.. .......... .......... .......... .......... 18 CTATAAAATT TGCTTTGCAT ACAATTGAAT CGAATTAAAA TGTATGTATA TTCCATAATT 70804 .......... .......... .......... .......... .......... .......... 18 ATAAGTGTAT AGCAAGAAGA TATATGTTTT TCTCTCGCTT TATACAAAAA CAGAAACACA 70744 .......... .......... .......... .......... .......... .......... 18 ATATTTACAC TTCTGTTGTA TAAAGCGAGA GAAAATCGTA TTTCATTGCA ATTGTATAAT 70684 ||||||||| .......... .......... .......... .......... .......... .TTGTATAAT 27 TCGTTGGCCT TTTTCGCTGC AATAATTGTA TAAAATTTGC ATTTGTCTAC AATTGAATTG 70624 |||||||||| ||||| ||| |||| || | TCGTTGGCCT TTTTCTTTGC AATATTT... .......... .......... .........G 55 AAGTAAAATG TTTGTAAATT GTATAATTAA GTGTATAACA CGAAGATATA TATTTTTGCA 70564 |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| ||||||| || AAGTAAAATG TTTGTAATTT GTATAATTAA GTGTATAACA CGAAGATATA TATTTTTACA 115 TGTATATATA CAATTTTCTC TCGCTTTTTA CAAAACAG-A ACATAATTTA TACACTTCTG 70505 ||| |||||| |||||||||| ||||||| || ||||| || | ||| |||||| |||||||||| TGTGTATATA CAATTTTCTC TCGCTTTATA CAAAATAGAA ACAGAATTTA TACACTTCTG 175 TGTATAAAAG CGAGAGAGGC GAACAGAGGG AGAGTGGCGA GCGAGAATGG GAGAGTGGTG 70445 ||||| | || ||||| | | | | || || | ||||| | |||||||| | TGTAT-ATAG CGAGATA-G- G--C------ -GA---GC-- G--AGAAT-G GAGAGTGGCG 215 AGCGAGATTT TT-GGAGAGA GGCGACTGAC AAACTTTGGG TAATGTTTTC TACGGAACAC 70386 |||||||||| || |||| || | || ||||| ||||||| | ||| |||| | || ||| ||| AGCGAGATTT TTGGGAGGGA GACGCCTGAC AAACTTTAGC TAACGTTTGC TATGGAGCAC 275 AATTAAATCA AACCGTAGCA ACTCCATTTG TTTTAGGTTA TTAGTTTGCT ATTATATATA 70326 |||||||||| ||| |||| ||||||||| |||| ||| ||||||||| |||||||| | AATTAAATCA AACTCTAGCT ACTCCATTT- AGTTAGATTA CTAGTTTGCT ATTATATACA 334 ATTATCCCAA TTATTAACTC CTCTTTACTT AACTTAAGTT CATGGGACAA ATATAAATGG 70266 ||| |||||| ATTTTCCCAA .......... .......... .......... .......... .......... 344 GTACTGCATG AATTATGGAC TTGGCCCACT AACAATTAAC TATACTAATT ATTTAATAAA 70206 .......... .......... .......... .......... .......... .......... 344 TTTCATCAAC TAGATACTCA TAGTTACCGA ATAGTTAAAT ATACCCTTTT AAATTTTCTA 70146 .......... .......... .......... .......... .......... .......... 344 GGGAGAGTCA AAATAGTCAT AGTTCTCAAA ACTACCTAGC GGGTCGTTAC ATCACTTACC 70086 .......... .......... .......... .......... .......... .......... 344 ACTTAAACAA ACGTTCGTCC TCAAACGGGA AAAGAAAAAA GAGCTAACCT GAACGCTCAA 70026 .......... .......... .......... .......... .......... .......... 344 AAAGCTGCGG ATATTTACTC CTCATGTCTG ACTCGATCAT CCATGTAGCC TCCTCTACCA 69966 .......... .......... .......... .......... .......... .......... 344 TACAAAGCCT CAAATGGTGC CATTTCAAAA CTCAAATGGT AACTATTATT GTAAGCAAAC 69906 .......... .......... .......... .......... .......... .......... 344 TCCACAAGTG GTAAGAACTG ATCCCAATGA TTACCAAAAT CGATCACACA CGCTCATAAC 69846 .......... .......... .......... .......... .......... .......... 344 ATGTCCTCAA GAACTTGAAT AATCCATTCA GACTGACTGT CAGTTTGAGG GTGAAAGGTT 69786 .......... .......... .......... .......... .......... .......... 344 GTACTAAGAT CCACCCGAGT GCCCAACTCC TTGTGCATAG ACAGCCAAAA ATGAGACATA 69726 .......... .......... .......... .......... .......... .......... 344 AATTTGGTGC CACGATCTGA AATAATAGAA ATAGAAACCC CATGCAAACG AACTATCTCT 69666 .......... .......... .......... .......... .......... .......... 344 CGAATATAAA TCTTGGCTAA CTTCTTTTAA TTATACGTAG TCTGAACGGG CACGAAGTGT 69606 .......... .......... .......... .......... .......... .......... 344 GCAGACTTAG TCAATCGATT CACGATGACC CATATAACAT CAAACTTACC CAAGGTACGG 69546 .......... .......... .......... .......... .......... .......... 344 GACAACTCTA CCACAATGTC CACAGCAATG CACTCCGACT TCCACTCAGG TATGGTATCC 69486 .......... .......... .......... .......... .......... .......... 344 TCAGAGTCAC ACCTCCAGGC TTTTGGTGTT CATGCTTCAC TTGCTGACAA TTCAAACATC 69426 .......... .......... .......... .......... .......... .......... 344 GAGATACAAA ATCTACTATG TCCCTTTTCA TACGGCAACA CAAATAATGC TGCTTCAAGT 69366 .......... .......... .......... .......... .......... .......... 344 CAAGATAAAT ATTTAGTAGC CCTTGGATGA ATAGAGTAAC TCAAACTATA GACCTCCTCC 69306 .......... .......... .......... .......... .......... .......... 344 ATGTTTAATC TAGTCAAATC CCTGTCCGAG GAACACATAT ATGACCCTTA ATCCTCAAAA 69246 .......... .......... .......... .......... .......... .......... 344 CTCCCTCACT ATCAAGAATT GCAGCCTTGG CTTCTCGTTT TAACACCTTG TCTCTAATCT 69186 .......... .......... .......... .......... .......... .......... 344 TACATAAATC ACCATCATCA AACTGTTGAG ACCAAAATCT GCTCCAATAA GGATGACCTA 69126 .......... .......... .......... .......... .......... .......... 344 GCCTCCATAT GAGCCAACAT TTACCAGATT CTGAAATATA AAGTACAAAG CTATTGGACA 69066 .......... .......... .......... .......... .......... .......... 344 ATAATTGGAC ATCTTTAGCT AAAGGACGCT TGCTAACCTG TAACATGGCT AGACTACCCA 69006 .......... .......... .......... .......... .......... .......... 344 TACTTACCGC CTTCAAACTC AAGGCATCTG CTACTACATT TGTCTTGCCT GGATGATAAA 68946 .......... .......... .......... .......... .......... .......... 344 GAATAGTCAT GTCGTAGTCT TTGAGCAACT CCAACCATAT CCGCTTCCTC AATTTGAGAT 68886 .......... .......... .......... .......... .......... .......... 344 CTCTTTGATT GAATATATAT TGGAGACTAC GATGATTTGT GAACACCGCA AAATGCACAC 68826 .......... .......... .......... .......... .......... .......... 344 CATAAAGATA ATTCATCCAA ATCTTTAATG CAAACACAAC AGTCACCAAC TCTAAATCAT 68766 .......... .......... .......... .......... .......... .......... 344 GAATAATATA CTTCTTCTCA TGAACCTTCA ACTGTCTCGA AGCATAAGCT ACCACCTTTC 68706 .......... .......... .......... .......... .......... .......... 344 CCTTCTGCAT CAATACACAA CCAAGACCAA TCTGAGAAGC ATCAATATAC AACAAAACCC 68646 .......... .......... .......... .......... .......... .......... 344 TCTCTCTCCA CTGGTAGGGT CAAAATTCTA GCAGTAGTTA ATTAAGTCTT GAGCTTTTGA 68586 .......... .......... .......... .......... .......... .......... 344 AAACTAACCT CACACTCGTC AGACCACAAG AAAGTCACCT CCTTCTATGT CAATCTAGTT 68526 .......... .......... .......... .......... .......... .......... 344 AACGTAGATG CAATGGATAA GAAATCATAG ATCGTCGATA ATAACCTGCA AGGCCTAAGA 68466 .......... .......... .......... .......... .......... .......... 344 AACTTCAAAT CTGAATAACT GAAGCAGGTC TAATCCAATC TTTAATTGTC TCAATCTTTT 68406 .......... .......... .......... .......... .......... .......... 344 TCGGATCCAC CATGATATCT TCTTTGGACA CTAAGCCAAA TCTCACACTT TGAAAACTTC 68346 .......... .......... .......... .......... .......... .......... 344 GTGTAAAGCT TTTTCTCCTT TAGAATCCCA AACACGGTCC TCAAATGATG CTCATGTTCC 68286 .......... .......... .......... .......... .......... .......... 344 TCCTTACGGC ATGATTATAT CAATATATCA TCAATGAATA CAATAACAAA GGAATCCAAA 68226 .......... .......... .......... .......... .......... .......... 344 TATTGTCTGA ACGCTCAATT CATCAAGTCC ATAAAAGTTG CATGGGCGTT AGTCAATTCA 68166 .......... .......... .......... .......... .......... .......... 344 AAATACATCA CTAAAAACTC GTAATGGCCA TAACGTGTTT GAAAAGCTGT CTTAGAGATA 68106 .......... .......... .......... .......... .......... .......... 344 TCCTCCTCCC TAAGCTTCAG CTGATGATAG CACGATCTCA AGTCAATCTT GGAGAAACTG 68046 .......... .......... .......... .......... .......... .......... 344 AAGCACCCTG CAACTAATCA AATAAATCAT CAATACGAGG TATCGGGTAC TAATTTATGA 67986 .......... .......... .......... .......... .......... .......... 344 TGGTTATCTT GTTCAGCTGC CGATAGTCAA TACACATATG CATGTATTCA TCCTTCCTCT 67926 .......... .......... .......... .......... .......... .......... 344 TTACAAATAA CAGTGGAGCA CCCCAAGAAG ATACACTCGT CCTAATAAAG ACCTTGTTTA 67866 .......... .......... .......... .......... .......... .......... 344 ACAAATCCTG CAACTGGTCT TTCATCTCTT TCAATTCAGC TGGTGTTATA CGATAAGGAG 67806 | | |||| || ||| .......... .......... .......... .........G AGCTTGTATA AAATGGAGAG 365 GAACAAAAA 67797 | ||||| AAGGAAAAA 374 hqPGS_C09HBa0047I13.1-_SGN-E394141- (70923 70906,70692 70657,70624 70316) ******************************************************************************** EST sequence 1 -strand 701 n (File: SGN-E578389-) 1 TCAAATAATT ATAATAAATA AGTCAAAAAA ATAATTTATG TATTAAAAAA ATTTGAAATA 61 TACCTTGAAC TTTGAAAAAA GAATCATATA TGCCCCTAAA TATATTTTTT TTTAAAATTA 121 AAGTAAAATT ATAAATTTAA AAGTAATTTT TTCACTTTCG TTAAATGAAG GGTATATATG 181 AGCTCATTTT GTAACGGCAG AGGTATATGT GAACCATTTG TATAACGGTA AGGGTATATA 241 TGAGCCACTT TCATAACGAG GGGTATATCA GTTTCAAATG ACAAAGTTGA GGGGTATATC 301 ATACCCTTTT CCCATAATAT TATTCATTTT TGGGTTGACG GGTCAAACCT TGGGCTGCTT 361 AGGACTTGAT TAGACCGCTA TTTTATTGAC TCTTTAATTA ATGGGCAACT TTCACATATA 421 ACAAACAAAA AATTCATATT TGTATGCTAT AACAAAGTTT GCATAATTGC GCTCCATAGC 481 AAACATAAAA TTGTATAATT CGCTGACCTA AATTGTATAA TTCGCTGGCC TATTTCGCTG 541 CAATTGTATA ATTCGCTATC CTATTTAACT ACAATTGTAT AATTCGCTGC CTATTTCGCT 601 GCAATATTAT TATAAAATTT GCTTTGCATA TAATTGAACC GAATTAAAAT GTATGTATAT 661 TGCATAATTA TAAGTGTATA GCAATAAGAT ATATGTTTTT C Predicted gene structure (within gDNA segment 76114 to 70172): Exon 1 71061 70967 ( 95 n); cDNA 387 480 ( 94 n); score: 0.732 Intron 1 70966 70931 ( 36 n); Pd: 0.000 (s: 0.74), Pa: 0.000 (s: 0.83) Exon 2 70930 70850 ( 81 n); cDNA 481 557 ( 77 n); score: 0.809 Intron 2 70849 70710 ( 140 n); Pd: 0.000 (s: 0.79), Pa: 0.000 (s: 0.86) Exon 3 70709 70567 ( 143 n); cDNA 558 700 ( 143 n); score: 0.797 MATCH C09HBa0047I13.1- SGN-E578389- 0.781 319 0.455 C PGS_C09HBa0047I13.1-_SGN-E578389- (71061 70967,70930 70850,70709 70567) Alignment (genomic DNA sequence = upper lines): TGAATAAATT ATTAA-GGGA AATTTTCACA TATAGAAAAT AAAAAATTCA TATTTGTATG 71003 ||| | | ||||| ||| || ||||||| |||| ||| |||||||||| |||||||||| TGACTCTTTA ATTAATGGGC AACTTTCACA TATAACAAAC AAAAAATTCA TATTTGTATG 446 CTATAGCAAA GTTTATAGCA AAGTTTGCAT AATTGCGCTC CATAGCAAAC ATAAAACTGT 70943 ||||| |||| |||| | || | || || || CTATAACAAA GTTTGCA--T AATTGCGCTC CATAGC.... .......... .......... 480 ATAATTCGCT ATACATATAC AATTGTATAA TTCACTGGCC TAAATTGTAT AATTCGCT-T 70884 | | ||| |||||||||| ||| ||| || |||||||||| |||||||| .......... ..AAACATAA AATTGTATAA TTCGCTGACC TAAATTGTAT AATTCGCTGG 528 CCTATTTCGC TGCAATATTT CTATAAAATT TGCTTTGCAT ACAATTGAAT CGAATTAAAA 70824 |||||||||| ||| | | || ||| |||| ||| CCTATTTCGC TGC-A-A-TT GTAT--AATT CGCT...... .......... .......... 557 TGTATGTATA TTCCATAATT ATAAGTGTAT AGCAAGAAGA TATATGTTTT TCTCTCGCTT 70764 .......... .......... .......... .......... .......... .......... 557 TATACAAAAA CAGAAACACA ATATTTACAC TTCTGTTGTA TAAAGCGAGA GAAAATCGTA 70704 ||| || .......... .......... .......... .......... .......... ....ATCCTA 563 TTTCATTGCA ATTGTATAAT TCGTTGGCCT TTTTCGCTGC AATAATTGTA TAAAATTTGC 70644 ||| | | || |||||||||| ||| | |||| ||||||||| |||| | || |||||||||| TTTAACTACA ATTGTATAAT TCGCT-GCCT ATTTCGCTGC AATATTATTA TAAAATTTGC 622 ATTTGTCTAC AATTGAATTG AAGTAAAATG TTTGTAAATT GTATAA-T-T AAGTGTATAA 70586 |||| || ||||||| | || ||||||| | |||| ||| | |||| | | ||||||||| -TTTGCATAT AATTGAACCG AATTAAAATG TATGTATATT GCATAATTAT AAGTGTATAG 681 CACGAAGATA TATATTTTT 70567 || |||||| ||| ||||| CAATAAGATA TATGTTTTT 700 hqPGS_C09HBa0047I13.1-_SGN-E578389- (71061 70967,70930 70850,70709 70567) ******************************************************************************** EST sequence 61 +strand 612 n (File: SGN-E394609+) 1 TAAAATGTAT GTATATTGCA TAATTATAAG TGTATGGCAA GAATATATAT GTTTTTGTCT 61 CGCTTTATAC AAAAACAAAA ACACAATATA TACACTTCTG TTGTATAAAG TTAGAGAAAA 121 TTGTATTTCA CTGCAATTAT ATAATTCACA ATTGTATAAT TCGTTGGCCT TTTTCTCTGC 181 AATATTTGAA GTAAAATGTT TGTAATTTGT ATAATTAAGT GTATAACACG AAGATATATA 241 TTTTTACATG TGTATATACA ATTTTCTCTC GCTTTATACA AAATAGAAAC AGAATTTATA 301 CACTTCTGTG TATATAGCGA GATAGGCGAG CGAGAATGGA GAGTGGCGAG CGAGATTTTT 361 GGGAGGGAGA CGCCTGACAA ACTTTAGCTA ACGTTTGCTA TGGAGCACAA TTAAATCAAA 421 CTCTAGCTAC TCCATTTAGT TAGATTACTA GTTTGCTATT ATATACAATT TTCCCAAGAG 481 CTTGTATAAA ATGGAGAGAA GGAAAAAGAT TTAGAATTAT CGCTTGTGAA TGACAAGAAA 541 AGATTGCAAA ATAAGAATTT AGTTGTTTTG CTTTAATAAG TTCCTTAATC ATTTCATTAG 601 GGGTGTAATA AT Predicted gene structure (within gDNA segment 71428 to 66909): Exon 1 70828 70316 ( 513 n); cDNA 1 477 ( 477 n); score: 0.817 Intron 1 70315 67827 (2489 n); Pd: 0.000 (s: 0.86), Pa: 0.863 (s: 0) Exon 2 67826 67797 ( 30 n); cDNA 478 507 ( 30 n); score: 0.567 MATCH C09HBa0047I13.1- SGN-E394609+ 0.817 543 0.887 C PGS_C09HBa0047I13.1-_SGN-E394609+ (70828 70316,67826 67797) Alignment (genomic DNA sequence = upper lines): TAAAATGTAT GTATATTCCA TAATTATAAG TGTATAGCAA GAAGATATAT GTTTTTCTCT 70769 |||||||||| ||||||| || |||||||||| ||||| |||| ||| |||||| |||||| ||| TAAAATGTAT GTATATTGCA TAATTATAAG TGTATGGCAA GAATATATAT GTTTTTGTCT 60 CGCTTTATAC AAAAACAGAA ACACAATATT TACACTTCTG TTGTATAAAG CGAGAGAAAA 70709 |||||||||| ||||||| || ||||||||| |||||||||| |||||||||| |||||||| CGCTTTATAC AAAAACAAAA ACACAATATA TACACTTCTG TTGTATAAAG TTAGAGAAAA 120 TCGTATTTCA TTGCAATTGT ATAATTCGTT GGCCTTTTTC GCTGCAATAA TTGTATAAAA 70649 | |||||||| ||||||| | ||||||| | || | | |||| || | TTGTATTTCA CTGCAATTAT ATAATTC--- --AC-AATT- G-T---ATAA TTC-GTTGGC 168 TTTGCATTTG TCTACAATTG AATTGAAGTA AAATGTTTGT AAATTGTATA ATTAAGTGTA 70589 || ||| ||| ||| | | |||||||| |||||||||| || ||||||| |||||||||| CTT---TTTC TCTGCAA-T- ATTTGAAGTA AAATGTTTGT AATTTGTATA ATTAAGTGTA 223 TAACACGAAG ATATATATTT TTGCATGTAT ATATACAATT TTCTCTCGCT TTTTACAAAA 70529 |||||||||| |||||||||| || ||||| | |||||||||| |||||||||| || ||||||| TAACACGAAG ATATATATTT TTACATGTGT ATATACAATT TTCTCTCGCT TTATACAAAA 283 CAG-AACATA ATTTATACAC TTCTGTGTAT AAAAGCGAGA GAGGCGAACA GAGGGAGAGT 70470 || |||| | |||||||||| |||||||||| | | | | || || | TAGAAACAGA ATTTATACAC TTCTGTGTAT ---------A TA---G--C- GA--GATA-- 324 GGCGAGCGAG AATGGGAGAG TGGTGAGCGA GATTTTT-GG AGAGAGGCGA CTGACAAACT 70411 |||||||||| ||| |||||| ||| |||||| ||||||| || || ||| || |||||||||| GGCGAGCGAG AAT-GGAGAG TGGCGAGCGA GATTTTTGGG AGGGAGACGC CTGACAAACT 383 TTGGGTAATG TTTTCTACGG AACACAATTA AATCAAACCG TAGCAACTCC ATTTGTTTTA 70351 || | ||| | ||| ||| || | |||||||| |||||||| |||| ||||| |||| ||| TTAGCTAACG TTTGCTATGG AGCACAATTA AATCAAACTC TAGCTACTCC ATTT-AGTTA 442 GGTTATTAGT TTGCTATTAT ATATAATTAT CCCAATTATT AACTCCTCTT TACTTAACTT 70291 | ||| |||| |||||||||| ||| |||| | ||||| GATTACTAGT TTGCTATTAT ATACAATTTT CCCAA..... .......... .......... 477 AAGTTCATGG GACAAATATA AATGGGTACT GCATGAATTA TGGACTTGGC CCACTAACAA 70231 .......... .......... .......... .......... .......... .......... 477 TTAACTATAC TAATTATTTA ATAAATTTCA TCAACTAGAT ACTCATAGTT ACCGAATAGT 70171 .......... .......... .......... .......... .......... .......... 477 TAAATATACC CTTTTAAATT TTCTAGGGAG AGTCAAAATA GTCATAGTTC TCAAAACTAC 70111 .......... .......... .......... .......... .......... .......... 477 CTAGCGGGTC GTTACATCAC TTACCACTTA AACAAACGTT CGTCCTCAAA CGGGAAAAGA 70051 .......... .......... .......... .......... .......... .......... 477 AAAAAGAGCT AACCTGAACG CTCAAAAAGC TGCGGATATT TACTCCTCAT GTCTGACTCG 69991 .......... .......... .......... .......... .......... .......... 477 ATCATCCATG TAGCCTCCTC TACCATACAA AGCCTCAAAT GGTGCCATTT CAAAACTCAA 69931 .......... .......... .......... .......... .......... .......... 477 ATGGTAACTA TTATTGTAAG CAAACTCCAC AAGTGGTAAG AACTGATCCC AATGATTACC 69871 .......... .......... .......... .......... .......... .......... 477 AAAATCGATC ACACACGCTC ATAACATGTC CTCAAGAACT TGAATAATCC ATTCAGACTG 69811 .......... .......... .......... .......... .......... .......... 477 ACTGTCAGTT TGAGGGTGAA AGGTTGTACT AAGATCCACC CGAGTGCCCA ACTCCTTGTG 69751 .......... .......... .......... .......... .......... .......... 477 CATAGACAGC CAAAAATGAG ACATAAATTT GGTGCCACGA TCTGAAATAA TAGAAATAGA 69691 .......... .......... .......... .......... .......... .......... 477 AACCCCATGC AAACGAACTA TCTCTCGAAT ATAAATCTTG GCTAACTTCT TTTAATTATA 69631 .......... .......... .......... .......... .......... .......... 477 CGTAGTCTGA ACGGGCACGA AGTGTGCAGA CTTAGTCAAT CGATTCACGA TGACCCATAT 69571 .......... .......... .......... .......... .......... .......... 477 AACATCAAAC TTACCCAAGG TACGGGACAA CTCTACCACA ATGTCCACAG CAATGCACTC 69511 .......... .......... .......... .......... .......... .......... 477 CGACTTCCAC TCAGGTATGG TATCCTCAGA GTCACACCTC CAGGCTTTTG GTGTTCATGC 69451 .......... .......... .......... .......... .......... .......... 477 TTCACTTGCT GACAATTCAA ACATCGAGAT ACAAAATCTA CTATGTCCCT TTTCATACGG 69391 .......... .......... .......... .......... .......... .......... 477 CAACACAAAT AATGCTGCTT CAAGTCAAGA TAAATATTTA GTAGCCCTTG GATGAATAGA 69331 .......... .......... .......... .......... .......... .......... 477 GTAACTCAAA CTATAGACCT CCTCCATGTT TAATCTAGTC AAATCCCTGT CCGAGGAACA 69271 .......... .......... .......... .......... .......... .......... 477 CATATATGAC CCTTAATCCT CAAAACTCCC TCACTATCAA GAATTGCAGC CTTGGCTTCT 69211 .......... .......... .......... .......... .......... .......... 477 CGTTTTAACA CCTTGTCTCT AATCTTACAT AAATCACCAT CATCAAACTG TTGAGACCAA 69151 .......... .......... .......... .......... .......... .......... 477 AATCTGCTCC AATAAGGATG ACCTAGCCTC CATATGAGCC AACATTTACC AGATTCTGAA 69091 .......... .......... .......... .......... .......... .......... 477 ATATAAAGTA CAAAGCTATT GGACAATAAT TGGACATCTT TAGCTAAAGG ACGCTTGCTA 69031 .......... .......... .......... .......... .......... .......... 477 ACCTGTAACA TGGCTAGACT ACCCATACTT ACCGCCTTCA AACTCAAGGC ATCTGCTACT 68971 .......... .......... .......... .......... .......... .......... 477 ACATTTGTCT TGCCTGGATG ATAAAGAATA GTCATGTCGT AGTCTTTGAG CAACTCCAAC 68911 .......... .......... .......... .......... .......... .......... 477 CATATCCGCT TCCTCAATTT GAGATCTCTT TGATTGAATA TATATTGGAG ACTACGATGA 68851 .......... .......... .......... .......... .......... .......... 477 TTTGTGAACA CCGCAAAATG CACACCATAA AGATAATTCA TCCAAATCTT TAATGCAAAC 68791 .......... .......... .......... .......... .......... .......... 477 ACAACAGTCA CCAACTCTAA ATCATGAATA ATATACTTCT TCTCATGAAC CTTCAACTGT 68731 .......... .......... .......... .......... .......... .......... 477 CTCGAAGCAT AAGCTACCAC CTTTCCCTTC TGCATCAATA CACAACCAAG ACCAATCTGA 68671 .......... .......... .......... .......... .......... .......... 477 GAAGCATCAA TATACAACAA AACCCTCTCT CTCCACTGGT AGGGTCAAAA TTCTAGCAGT 68611 .......... .......... .......... .......... .......... .......... 477 AGTTAATTAA GTCTTGAGCT TTTGAAAACT AACCTCACAC TCGTCAGACC ACAAGAAAGT 68551 .......... .......... .......... .......... .......... .......... 477 CACCTCCTTC TATGTCAATC TAGTTAACGT AGATGCAATG GATAAGAAAT CATAGATCGT 68491 .......... .......... .......... .......... .......... .......... 477 CGATAATAAC CTGCAAGGCC TAAGAAACTT CAAATCTGAA TAACTGAAGC AGGTCTAATC 68431 .......... .......... .......... .......... .......... .......... 477 CAATCTTTAA TTGTCTCAAT CTTTTTCGGA TCCACCATGA TATCTTCTTT GGACACTAAG 68371 .......... .......... .......... .......... .......... .......... 477 CCAAATCTCA CACTTTGAAA ACTTCGTGTA AAGCTTTTTC TCCTTTAGAA TCCCAAACAC 68311 .......... .......... .......... .......... .......... .......... 477 GGTCCTCAAA TGATGCTCAT GTTCCTCCTT ACGGCATGAT TATATCAATA TATCATCAAT 68251 .......... .......... .......... .......... .......... .......... 477 GAATACAATA ACAAAGGAAT CCAAATATTG TCTGAACGCT CAATTCATCA AGTCCATAAA 68191 .......... .......... .......... .......... .......... .......... 477 AGTTGCATGG GCGTTAGTCA ATTCAAAATA CATCACTAAA AACTCGTAAT GGCCATAACG 68131 .......... .......... .......... .......... .......... .......... 477 TGTTTGAAAA GCTGTCTTAG AGATATCCTC CTCCCTAAGC TTCAGCTGAT GATAGCACGA 68071 .......... .......... .......... .......... .......... .......... 477 TCTCAAGTCA ATCTTGGAGA AACTGAAGCA CCCTGCAACT AATCAAATAA ATCATCAATA 68011 .......... .......... .......... .......... .......... .......... 477 CGAGGTATCG GGTACTAATT TATGATGGTT ATCTTGTTCA GCTGCCGATA GTCAATACAC 67951 .......... .......... .......... .......... .......... .......... 477 ATATGCATGT ATTCATCCTT CCTCTTTACA AATAACAGTG GAGCACCCCA AGAAGATACA 67891 .......... .......... .......... .......... .......... .......... 477 CTCGTCCTAA TAAAGACCTT GTTTAACAAA TCCTGCAACT GGTCTTTCAT CTCTTTCAAT 67831 .......... .......... .......... .......... .......... .......... 477 TCAGCTGGTG TTATACGATA AGGAGGAACA AAAA 67797 | | |||| || ||| | | |||| ....GAGCTT GTATAAAATG GAGAGAAGGA AAAA 507 hqPGS_C09HBa0047I13.1-_SGN-E394609+ (70828 70316) ******************************************************************************** EST sequence 3 -strand 750 n (File: SGN-E379112-) 1 TAAAATGTAT GTATATTGCA TAATTATAAG TGTATGGCAA GAATATATAT GTTTTTGTCT 61 CGCTTTATAC AAAAACAAAA ANCACAATAT ATACACTTCT GTTGTATAAA GTTAGAGAAA 121 ATTGTATTTC ACTGCAATTA TATAATTCAC AATTGTATAA TTCGTTGGCC TTTTTCTCTG 181 CAATATTTGA AGTAAAATGT TTGTAATTTG TATAATTAAG TGTATAACAC GAAGATATAT 241 ATTTTTACAT GTGTATATAC AATTTTCTCT CGCTTTATAC AAAATAGAAA CAGAATTTAT 301 ACACTTCTGT GTATATAGCG AGATAGGCGA GCGAGAATGG AGAGTGGCGA GCGAGATTTT 361 TGGGAGGGAG ACGCCTGACA AACTTTAGCT AACGTTTGCT ATGGAGCACA ATTAAATCAA 421 ACTCTAGCTA CTCCATTTAG TTAGATTACT AGTTTGCTAT TATATACAAT TTTCCCAAGA 481 GCTTGTATAA AATGGAGAGA AGGAAAAAGA TTTAGAATTA TCGCTTGTGA ATGACAAGAA 541 AAGATTGCAA AATAAGAATT TAGTTGTTTT GCTTTAATAA GTTCCTTAAT CATTTCATTA 601 GGGGTGTAAT AATAGAATAA GAAAAGGGGC TTGAAATTCA GCTATAAACA ACCAGGGCAT 661 AGGTAACGTG TATACTTGAT GTTATAGGTG AGATTTCAGC TTCTCAATTT CGTCTAATTA 721 ACGGAATATA TATATATATA TATTCCCACA Predicted gene structure (within gDNA segment 71438 to 65549): Exon 1 70828 70316 ( 513 n); cDNA 1 478 ( 478 n); score: 0.812 Intron 1 70315 67827 (2489 n); Pd: 0.000 (s: 0.86), Pa: 0.863 (s: 0) Exon 2 67826 67797 ( 30 n); cDNA 479 508 ( 30 n); score: 0.567 MATCH C09HBa0047I13.1- SGN-E379112- 0.812 543 0.724 C PGS_C09HBa0047I13.1-_SGN-E379112- (70828 70316,67826 67797) Alignment (genomic DNA sequence = upper lines): TAAAATGTAT GTATATTCCA TAATTATAAG TGTATAGCAA GAAGATATAT GTTTTTCTCT 70769 |||||||||| ||||||| || |||||||||| ||||| |||| ||| |||||| |||||| ||| TAAAATGTAT GTATATTGCA TAATTATAAG TGTATGGCAA GAATATATAT GTTTTTGTCT 60 CGCTTTATAC AAAAACAGAA A-CACAATAT TTACACTTCT GTTGTATAAA GCGAGAGAAA 70710 |||||||||| ||||||| || | |||||||| ||||||||| |||||||||| | ||||||| CGCTTTATAC AAAAACAAAA ANCACAATAT ATACACTTCT GTTGTATAAA GTTAGAGAAA 120 ATCGTATTTC ATTGCAATTG TATAATTCGT TGGCCTTTTT CGCTGCAATA ATTGTATAAA 70650 || ||||||| | ||||||| |||||||| | || | | ||| ||| | ATTGTATTTC ACTGCAATTA TATAATTC-- ---AC-AATT -G-T---ATA ATT-CGTTGG 168 ATTTGCATTT GTCTACAATT GAATTGAAGT AAAATGTTTG TAAATTGTAT AATTAAGTGT 70590 || ||| ||| ||| | | ||||||| |||||||||| ||| |||||| |||||||||| CCTT---TTT CTCTGCAA-T -ATTTGAAGT AAAATGTTTG TAATTTGTAT AATTAAGTGT 223 ATAACACGAA GATATATATT TTTGCATGTA TATATACAAT TTTCTCTCGC TTTTTACAAA 70530 |||||||||| |||||||||| ||| ||||| |||||||||| |||||||||| ||| |||||| ATAACACGAA GATATATATT TTTACATGTG TATATACAAT TTTCTCTCGC TTTATACAAA 283 ACAG-AACAT AATTTATACA CTTCTGTGTA TAAAAGCGAG AGAGGCGAAC AGAGGGAGAG 70471 | || |||| |||||||||| |||||||||| | | | | | || || | ATAGAAACAG AATTTATACA CTTCTGTGTA T--------- ATA---G--C -GA--GATA- 325 TGGCGAGCGA GAATGGGAGA GTGGTGAGCG AGATTTTT-G GAGAGAGGCG ACTGACAAAC 70412 ||||||||| |||| ||||| |||| ||||| |||||||| | ||| ||| || ||||||||| -GGCGAGCGA GAAT-GGAGA GTGGCGAGCG AGATTTTTGG GAGGGAGACG CCTGACAAAC 383 TTTGGGTAAT GTTTTCTACG GAACACAATT AAATCAAACC GTAGCAACTC CATTTGTTTT 70352 ||| | ||| |||| ||| | || ||||||| ||||||||| |||| |||| ||||| || TTTAGCTAAC GTTTGCTATG GAGCACAATT AAATCAAACT CTAGCTACTC CATTT-AGTT 442 AGGTTATTAG TTTGCTATTA TATATAATTA TCCCAATTAT TAACTCCTCT TTACTTAACT 70292 || ||| ||| |||||||||| |||| |||| |||||| AGATTACTAG TTTGCTATTA TATACAATTT TCCCAA.... .......... .......... 478 TAAGTTCATG GGACAAATAT AAATGGGTAC TGCATGAATT ATGGACTTGG CCCACTAACA 70232 .......... .......... .......... .......... .......... .......... 478 ATTAACTATA CTAATTATTT AATAAATTTC ATCAACTAGA TACTCATAGT TACCGAATAG 70172 .......... .......... .......... .......... .......... .......... 478 TTAAATATAC CCTTTTAAAT TTTCTAGGGA GAGTCAAAAT AGTCATAGTT CTCAAAACTA 70112 .......... .......... .......... .......... .......... .......... 478 CCTAGCGGGT CGTTACATCA CTTACCACTT AAACAAACGT TCGTCCTCAA ACGGGAAAAG 70052 .......... .......... .......... .......... .......... .......... 478 AAAAAAGAGC TAACCTGAAC GCTCAAAAAG CTGCGGATAT TTACTCCTCA TGTCTGACTC 69992 .......... .......... .......... .......... .......... .......... 478 GATCATCCAT GTAGCCTCCT CTACCATACA AAGCCTCAAA TGGTGCCATT TCAAAACTCA 69932 .......... .......... .......... .......... .......... .......... 478 AATGGTAACT ATTATTGTAA GCAAACTCCA CAAGTGGTAA GAACTGATCC CAATGATTAC 69872 .......... .......... .......... .......... .......... .......... 478 CAAAATCGAT CACACACGCT CATAACATGT CCTCAAGAAC TTGAATAATC CATTCAGACT 69812 .......... .......... .......... .......... .......... .......... 478 GACTGTCAGT TTGAGGGTGA AAGGTTGTAC TAAGATCCAC CCGAGTGCCC AACTCCTTGT 69752 .......... .......... .......... .......... .......... .......... 478 GCATAGACAG CCAAAAATGA GACATAAATT TGGTGCCACG ATCTGAAATA ATAGAAATAG 69692 .......... .......... .......... .......... .......... .......... 478 AAACCCCATG CAAACGAACT ATCTCTCGAA TATAAATCTT GGCTAACTTC TTTTAATTAT 69632 .......... .......... .......... .......... .......... .......... 478 ACGTAGTCTG AACGGGCACG AAGTGTGCAG ACTTAGTCAA TCGATTCACG ATGACCCATA 69572 .......... .......... .......... .......... .......... .......... 478 TAACATCAAA CTTACCCAAG GTACGGGACA ACTCTACCAC AATGTCCACA GCAATGCACT 69512 .......... .......... .......... .......... .......... .......... 478 CCGACTTCCA CTCAGGTATG GTATCCTCAG AGTCACACCT CCAGGCTTTT GGTGTTCATG 69452 .......... .......... .......... .......... .......... .......... 478 CTTCACTTGC TGACAATTCA AACATCGAGA TACAAAATCT ACTATGTCCC TTTTCATACG 69392 .......... .......... .......... .......... .......... .......... 478 GCAACACAAA TAATGCTGCT TCAAGTCAAG ATAAATATTT AGTAGCCCTT GGATGAATAG 69332 .......... .......... .......... .......... .......... .......... 478 AGTAACTCAA ACTATAGACC TCCTCCATGT TTAATCTAGT CAAATCCCTG TCCGAGGAAC 69272 .......... .......... .......... .......... .......... .......... 478 ACATATATGA CCCTTAATCC TCAAAACTCC CTCACTATCA AGAATTGCAG CCTTGGCTTC 69212 .......... .......... .......... .......... .......... .......... 478 TCGTTTTAAC ACCTTGTCTC TAATCTTACA TAAATCACCA TCATCAAACT GTTGAGACCA 69152 .......... .......... .......... .......... .......... .......... 478 AAATCTGCTC CAATAAGGAT GACCTAGCCT CCATATGAGC CAACATTTAC CAGATTCTGA 69092 .......... .......... .......... .......... .......... .......... 478 AATATAAAGT ACAAAGCTAT TGGACAATAA TTGGACATCT TTAGCTAAAG GACGCTTGCT 69032 .......... .......... .......... .......... .......... .......... 478 AACCTGTAAC ATGGCTAGAC TACCCATACT TACCGCCTTC AAACTCAAGG CATCTGCTAC 68972 .......... .......... .......... .......... .......... .......... 478 TACATTTGTC TTGCCTGGAT GATAAAGAAT AGTCATGTCG TAGTCTTTGA GCAACTCCAA 68912 .......... .......... .......... .......... .......... .......... 478 CCATATCCGC TTCCTCAATT TGAGATCTCT TTGATTGAAT ATATATTGGA GACTACGATG 68852 .......... .......... .......... .......... .......... .......... 478 ATTTGTGAAC ACCGCAAAAT GCACACCATA AAGATAATTC ATCCAAATCT TTAATGCAAA 68792 .......... .......... .......... .......... .......... .......... 478 CACAACAGTC ACCAACTCTA AATCATGAAT AATATACTTC TTCTCATGAA CCTTCAACTG 68732 .......... .......... .......... .......... .......... .......... 478 TCTCGAAGCA TAAGCTACCA CCTTTCCCTT CTGCATCAAT ACACAACCAA GACCAATCTG 68672 .......... .......... .......... .......... .......... .......... 478 AGAAGCATCA ATATACAACA AAACCCTCTC TCTCCACTGG TAGGGTCAAA ATTCTAGCAG 68612 .......... .......... .......... .......... .......... .......... 478 TAGTTAATTA AGTCTTGAGC TTTTGAAAAC TAACCTCACA CTCGTCAGAC CACAAGAAAG 68552 .......... .......... .......... .......... .......... .......... 478 TCACCTCCTT CTATGTCAAT CTAGTTAACG TAGATGCAAT GGATAAGAAA TCATAGATCG 68492 .......... .......... .......... .......... .......... .......... 478 TCGATAATAA CCTGCAAGGC CTAAGAAACT TCAAATCTGA ATAACTGAAG CAGGTCTAAT 68432 .......... .......... .......... .......... .......... .......... 478 CCAATCTTTA ATTGTCTCAA TCTTTTTCGG ATCCACCATG ATATCTTCTT TGGACACTAA 68372 .......... .......... .......... .......... .......... .......... 478 GCCAAATCTC ACACTTTGAA AACTTCGTGT AAAGCTTTTT CTCCTTTAGA ATCCCAAACA 68312 .......... .......... .......... .......... .......... .......... 478 CGGTCCTCAA ATGATGCTCA TGTTCCTCCT TACGGCATGA TTATATCAAT ATATCATCAA 68252 .......... .......... .......... .......... .......... .......... 478 TGAATACAAT AACAAAGGAA TCCAAATATT GTCTGAACGC TCAATTCATC AAGTCCATAA 68192 .......... .......... .......... .......... .......... .......... 478 AAGTTGCATG GGCGTTAGTC AATTCAAAAT ACATCACTAA AAACTCGTAA TGGCCATAAC 68132 .......... .......... .......... .......... .......... .......... 478 GTGTTTGAAA AGCTGTCTTA GAGATATCCT CCTCCCTAAG CTTCAGCTGA TGATAGCACG 68072 .......... .......... .......... .......... .......... .......... 478 ATCTCAAGTC AATCTTGGAG AAACTGAAGC ACCCTGCAAC TAATCAAATA AATCATCAAT 68012 .......... .......... .......... .......... .......... .......... 478 ACGAGGTATC GGGTACTAAT TTATGATGGT TATCTTGTTC AGCTGCCGAT AGTCAATACA 67952 .......... .......... .......... .......... .......... .......... 478 CATATGCATG TATTCATCCT TCCTCTTTAC AAATAACAGT GGAGCACCCC AAGAAGATAC 67892 .......... .......... .......... .......... .......... .......... 478 ACTCGTCCTA ATAAAGACCT TGTTTAACAA ATCCTGCAAC TGGTCTTTCA TCTCTTTCAA 67832 .......... .......... .......... .......... .......... .......... 478 TTCAGCTGGT GTTATACGAT AAGGAGGAAC AAAAA 67797 | | |||| || ||| | ||||| .....GAGCT TGTATAAAAT GGAGAGAAGG AAAAA 508 hqPGS_C09HBa0047I13.1-_SGN-E379112- (70828 70316) ******************************************************************************** EST sequence 15 -strand 605 n (File: SGN-E392605-) 1 AATATTTGAA GTAAAATGTT TGTAATTTGT ATAATTAAGT GTATAACACG AAGATATATA 61 TTTTTACATG TGTATATACA ATTTTCTCTC GCTTTATACA AAATAGAAAC AGAATTTATA 121 CACTTCTGTG TATATAGCGA GATAGGCGAG CGAGAATGGA GAGTGGCGAG CGAGATTTTT 181 GGGAGGGAGA CGCCTGACAA ACTTTAGCTA ACGTTTGCTA TGGAGCACAA TTAAATCAAA 241 CTCTAGCTAC TCCATTTAGT TAGATTACTA GTTTGCTATT ATATACAATT TTCCCAAGAG 301 CTTGTATAAA ATGGAGAGAA GGAAAAAGAT TTAGAATTAT CGCTTGTGAA TGACAAGAAA 361 AGATTGCAAA ATAAGAATTT AGTTGTTTTG CTTTAATAAG TTCCTTAATC ATTTCATTAG 421 GGGTGTAATA ATAGAATAAG AAAAGGGGCT TGAAATTCAG CTATAAACAA CCAGGGCATA 481 GGTAACGTGT ATACTTGATG TTATAGGTGA AATTTCAGCT TCTCAATTTC GATTAATTAA 541 CATTATAGAT ATATATATAT ATTCCCACAG TATCACATTT GATAGGAAAA AAAAAAAAAA 601 AAAAA Predicted gene structure (within gDNA segment 71286 to 65189): Exon 1 70626 70316 ( 311 n); cDNA 6 297 ( 292 n); score: 0.830 Intron 1 70315 67827 (2489 n); Pd: 0.000 (s: 0.86), Pa: 0.863 (s: 0) Exon 2 67826 67797 ( 30 n); cDNA 298 327 ( 30 n); score: 0.567 PPA cDNA 587 605 MATCH C09HBa0047I13.1- SGN-E392605- 0.830 341 0.564 C PGS_C09HBa0047I13.1-_SGN-E392605- (70626 70316,67826 67797) Alignment (genomic DNA sequence = upper lines): TTGAAGTAAA ATGTTTGTAA ATTGTATAAT TAAGTGTATA ACACGAAGAT ATATATTTTT 70567 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| TTGAAGTAAA ATGTTTGTAA TTTGTATAAT TAAGTGTATA ACACGAAGAT ATATATTTTT 65 GCATGTATAT ATACAATTTT CTCTCGCTTT TTACAAAACA G-AACATAAT TTATACACTT 70508 ||||| ||| |||||||||| |||||||||| ||||||| | | |||| ||| |||||||||| ACATGTGTAT ATACAATTTT CTCTCGCTTT ATACAAAATA GAAACAGAAT TTATACACTT 125 CTGTGTATAA AAGCGAGAGA GGCGAACAGA GGGAGAGTGG CGAGCGAGAA TGGGAGAGTG 70448 |||||||| | ||| |||| || | |||||||||| | |||||||| CTGTGTAT-A TAGC--GAGA ---------- ----TAG-G- CGAGCGAGAA T-GGAGAGTG 165 GTGAGCGAGA TTTTT-GGAG AGAGGCGACT GACAAACTTT GGGTAATGTT TTCTACGGAA 70389 | |||||||| ||||| |||| ||| || || |||||||||| | ||| ||| | ||| ||| GCGAGCGAGA TTTTTGGGAG GGAGACGCCT GACAAACTTT AGCTAACGTT TGCTATGGAG 225 CACAATTAAA TCAAACCGTA GCAACTCCAT TTGTTTTAGG TTATTAGTTT GCTATTATAT 70329 |||||||||| |||||| || || ||||||| || |||| ||| |||||| |||||||||| CACAATTAAA TCAAACTCTA GCTACTCCAT TT-AGTTAGA TTACTAGTTT GCTATTATAT 284 ATAATTATCC CAATTATTAA CTCCTCTTTA CTTAACTTAA GTTCATGGGA CAAATATAAA 70269 | |||| ||| ||| ACAATTTTCC CAA....... .......... .......... .......... .......... 297 TGGGTACTGC ATGAATTATG GACTTGGCCC ACTAACAATT AACTATACTA ATTATTTAAT 70209 .......... .......... .......... .......... .......... .......... 297 AAATTTCATC AACTAGATAC TCATAGTTAC CGAATAGTTA AATATACCCT TTTAAATTTT 70149 .......... .......... .......... .......... .......... .......... 297 CTAGGGAGAG TCAAAATAGT CATAGTTCTC AAAACTACCT AGCGGGTCGT TACATCACTT 70089 .......... .......... .......... .......... .......... .......... 297 ACCACTTAAA CAAACGTTCG TCCTCAAACG GGAAAAGAAA AAAGAGCTAA CCTGAACGCT 70029 .......... .......... .......... .......... .......... .......... 297 CAAAAAGCTG CGGATATTTA CTCCTCATGT CTGACTCGAT CATCCATGTA GCCTCCTCTA 69969 .......... .......... .......... .......... .......... .......... 297 CCATACAAAG CCTCAAATGG TGCCATTTCA AAACTCAAAT GGTAACTATT ATTGTAAGCA 69909 .......... .......... .......... .......... .......... .......... 297 AACTCCACAA GTGGTAAGAA CTGATCCCAA TGATTACCAA AATCGATCAC ACACGCTCAT 69849 .......... .......... .......... .......... .......... .......... 297 AACATGTCCT CAAGAACTTG AATAATCCAT TCAGACTGAC TGTCAGTTTG AGGGTGAAAG 69789 .......... .......... .......... .......... .......... .......... 297 GTTGTACTAA GATCCACCCG AGTGCCCAAC TCCTTGTGCA TAGACAGCCA AAAATGAGAC 69729 .......... .......... .......... .......... .......... .......... 297 ATAAATTTGG TGCCACGATC TGAAATAATA GAAATAGAAA CCCCATGCAA ACGAACTATC 69669 .......... .......... .......... .......... .......... .......... 297 TCTCGAATAT AAATCTTGGC TAACTTCTTT TAATTATACG TAGTCTGAAC GGGCACGAAG 69609 .......... .......... .......... .......... .......... .......... 297 TGTGCAGACT TAGTCAATCG ATTCACGATG ACCCATATAA CATCAAACTT ACCCAAGGTA 69549 .......... .......... .......... .......... .......... .......... 297 CGGGACAACT CTACCACAAT GTCCACAGCA ATGCACTCCG ACTTCCACTC AGGTATGGTA 69489 .......... .......... .......... .......... .......... .......... 297 TCCTCAGAGT CACACCTCCA GGCTTTTGGT GTTCATGCTT CACTTGCTGA CAATTCAAAC 69429 .......... .......... .......... .......... .......... .......... 297 ATCGAGATAC AAAATCTACT ATGTCCCTTT TCATACGGCA ACACAAATAA TGCTGCTTCA 69369 .......... .......... .......... .......... .......... .......... 297 AGTCAAGATA AATATTTAGT AGCCCTTGGA TGAATAGAGT AACTCAAACT ATAGACCTCC 69309 .......... .......... .......... .......... .......... .......... 297 TCCATGTTTA ATCTAGTCAA ATCCCTGTCC GAGGAACACA TATATGACCC TTAATCCTCA 69249 .......... .......... .......... .......... .......... .......... 297 AAACTCCCTC ACTATCAAGA ATTGCAGCCT TGGCTTCTCG TTTTAACACC TTGTCTCTAA 69189 .......... .......... .......... .......... .......... .......... 297 TCTTACATAA ATCACCATCA TCAAACTGTT GAGACCAAAA TCTGCTCCAA TAAGGATGAC 69129 .......... .......... .......... .......... .......... .......... 297 CTAGCCTCCA TATGAGCCAA CATTTACCAG ATTCTGAAAT ATAAAGTACA AAGCTATTGG 69069 .......... .......... .......... .......... .......... .......... 297 ACAATAATTG GACATCTTTA GCTAAAGGAC GCTTGCTAAC CTGTAACATG GCTAGACTAC 69009 .......... .......... .......... .......... .......... .......... 297 CCATACTTAC CGCCTTCAAA CTCAAGGCAT CTGCTACTAC ATTTGTCTTG CCTGGATGAT 68949 .......... .......... .......... .......... .......... .......... 297 AAAGAATAGT CATGTCGTAG TCTTTGAGCA ACTCCAACCA TATCCGCTTC CTCAATTTGA 68889 .......... .......... .......... .......... .......... .......... 297 GATCTCTTTG ATTGAATATA TATTGGAGAC TACGATGATT TGTGAACACC GCAAAATGCA 68829 .......... .......... .......... .......... .......... .......... 297 CACCATAAAG ATAATTCATC CAAATCTTTA ATGCAAACAC AACAGTCACC AACTCTAAAT 68769 .......... .......... .......... .......... .......... .......... 297 CATGAATAAT ATACTTCTTC TCATGAACCT TCAACTGTCT CGAAGCATAA GCTACCACCT 68709 .......... .......... .......... .......... .......... .......... 297 TTCCCTTCTG CATCAATACA CAACCAAGAC CAATCTGAGA AGCATCAATA TACAACAAAA 68649 .......... .......... .......... .......... .......... .......... 297 CCCTCTCTCT CCACTGGTAG GGTCAAAATT CTAGCAGTAG TTAATTAAGT CTTGAGCTTT 68589 .......... .......... .......... .......... .......... .......... 297 TGAAAACTAA CCTCACACTC GTCAGACCAC AAGAAAGTCA CCTCCTTCTA TGTCAATCTA 68529 .......... .......... .......... .......... .......... .......... 297 GTTAACGTAG ATGCAATGGA TAAGAAATCA TAGATCGTCG ATAATAACCT GCAAGGCCTA 68469 .......... .......... .......... .......... .......... .......... 297 AGAAACTTCA AATCTGAATA ACTGAAGCAG GTCTAATCCA ATCTTTAATT GTCTCAATCT 68409 .......... .......... .......... .......... .......... .......... 297 TTTTCGGATC CACCATGATA TCTTCTTTGG ACACTAAGCC AAATCTCACA CTTTGAAAAC 68349 .......... .......... .......... .......... .......... .......... 297 TTCGTGTAAA GCTTTTTCTC CTTTAGAATC CCAAACACGG TCCTCAAATG ATGCTCATGT 68289 .......... .......... .......... .......... .......... .......... 297 TCCTCCTTAC GGCATGATTA TATCAATATA TCATCAATGA ATACAATAAC AAAGGAATCC 68229 .......... .......... .......... .......... .......... .......... 297 AAATATTGTC TGAACGCTCA ATTCATCAAG TCCATAAAAG TTGCATGGGC GTTAGTCAAT 68169 .......... .......... .......... .......... .......... .......... 297 TCAAAATACA TCACTAAAAA CTCGTAATGG CCATAACGTG TTTGAAAAGC TGTCTTAGAG 68109 .......... .......... .......... .......... .......... .......... 297 ATATCCTCCT CCCTAAGCTT CAGCTGATGA TAGCACGATC TCAAGTCAAT CTTGGAGAAA 68049 .......... .......... .......... .......... .......... .......... 297 CTGAAGCACC CTGCAACTAA TCAAATAAAT CATCAATACG AGGTATCGGG TACTAATTTA 67989 .......... .......... .......... .......... .......... .......... 297 TGATGGTTAT CTTGTTCAGC TGCCGATAGT CAATACACAT ATGCATGTAT TCATCCTTCC 67929 .......... .......... .......... .......... .......... .......... 297 TCTTTACAAA TAACAGTGGA GCACCCCAAG AAGATACACT CGTCCTAATA AAGACCTTGT 67869 .......... .......... .......... .......... .......... .......... 297 TTAACAAATC CTGCAACTGG TCTTTCATCT CTTTCAATTC AGCTGGTGTT ATACGATAAG 67809 | | | ||| || .......... .......... .......... .......... ..GAGCTTGT ATAAAATGGA 315 GAGGAACAAA AA 67797 ||| | ||| || GAGAAGGAAA AA 327 hqPGS_C09HBa0047I13.1-_SGN-E392605- (70626 70316) ******************************************************************************** EST sequence 30 +strand 570 n (File: SGN-E379618+) 1 AAAATGTATG TATATTGCAT AATTATAAGT GTATGGCAAG AATATATATG TTTTTGTCTC 61 GCTTTATACA AAAACAAAAA CACAATATAT ACACTTCTGT TGTATAAAGT TAGAGAAAAT 121 TGTATTTCAC TGCAATTATA TAATTCACAA TTGTATAATT CGTTGGCCTT TTTCTCTGCA 181 ATATTTGAAG TAAAATGTTT GTAATTTGTA TAATTAAGTG TATAACACGA AGATATATAT 241 TTTTACATGT GTATATACAA TTTTCTCTCG CTTTATACAA AATAGAAACA GAATTTATAC 301 ACTTCTGTGT ATATAGCGAG ATAGGCGAGC GAGAATGGAG AGTGGCGAGC GAGATTTTTG 361 GGAGGGAGAC GCCTGACAAA CTTTAGCTAA CGTTTGCTAT GGAGCACAAT TAAATCAAAC 421 TCTAGCTACT CCATTTAGTT AGATTACTAG TTTGCTATTA TATACAATTT TCCCAAGAGC 481 TTGTATAANA TGGAGAGAAG GAAAAAGATT TAGAATTATC GCTTGTGAAT GACAAGAAAA 541 GATTGCAAAA TAAGAATTTA GTTGTTTTGC Predicted gene structure (within gDNA segment 71427 to 67319): Exon 1 70827 70317 ( 511 n); cDNA 1 475 ( 475 n); score: 0.816 MATCH C09HBa0047I13.1- SGN-E379618+ 0.816 511 0.896 C PGS_C09HBa0047I13.1-_SGN-E379618+ (70827 70317) Alignment (genomic DNA sequence = upper lines): AAAATGTATG TATATTCCAT AATTATAAGT GTATAGCAAG AAGATATATG TTTTTCTCTC 70768 |||||||||| |||||| ||| |||||||||| |||| ||||| || ||||||| ||||| |||| AAAATGTATG TATATTGCAT AATTATAAGT GTATGGCAAG AATATATATG TTTTTGTCTC 60 GCTTTATACA AAAACAGAAA CACAATATTT ACACTTCTGT TGTATAAAGC GAGAGAAAAT 70708 |||||||||| |||||| ||| |||||||| | |||||||||| ||||||||| ||||||||| GCTTTATACA AAAACAAAAA CACAATATAT ACACTTCTGT TGTATAAAGT TAGAGAAAAT 120 CGTATTTCAT TGCAATTGTA TAATTCGTTG GCCTTTTTCG CTGCAATAAT TGTATAAAAT 70648 |||||||| ||||||| || |||||| | || | | ||| | || | TGTATTTCAC TGCAATTATA TAATTC---- -AC-AATT-G -TATAAT--T CGT-T-GGCC 168 TTGCATTTGT CTACAATTGA ATTGAAGTAA AATGTTTGTA AATTGTATAA TTAAGTGTAT 70588 || ||| | || ||| | | ||||||||| |||||||||| | |||||||| |||||||||| TT---TTTCT CTGCAA-T-A TTTGAAGTAA AATGTTTGTA ATTTGTATAA TTAAGTGTAT 223 AACACGAAGA TATATATTTT TGCATGTATA TATACAATTT TCTCTCGCTT TTTACAAAAC 70528 |||||||||| |||||||||| | ||||| || |||||||||| |||||||||| | ||||||| AACACGAAGA TATATATTTT TACATGTGTA TATACAATTT TCTCTCGCTT TATACAAAAT 283 AG-AACATAA TTTATACACT TCTGTGTATA AAAGCGAGAG AGGCGAACAG AGGGAGAGTG 70469 || |||| || |||||||||| ||||||||| | | | | | | || | | AGAAACAGAA TTTATACACT TCTGTGTAT- --------AT A---G--C-G A--GATA--G 324 GCGAGCGAGA ATGGGAGAGT GGTGAGCGAG ATTTTT-GGA GAGAGGCGAC TGACAAACTT 70410 |||||||||| || ||||||| || ||||||| |||||| ||| | ||| || | |||||||||| GCGAGCGAGA AT-GGAGAGT GGCGAGCGAG ATTTTTGGGA GGGAGACGCC TGACAAACTT 383 TGGGTAATGT TTTCTACGGA ACACAATTAA ATCAAACCGT AGCAACTCCA TTTGTTTTAG 70350 | | ||| || || ||| ||| ||||||||| ||||||| | ||| |||||| ||| |||| TAGCTAACGT TTGCTATGGA GCACAATTAA ATCAAACTCT AGCTACTCCA TTT-AGTTAG 442 GTTATTAGTT TGCTATTATA TATAATTATC CCA 70317 ||| ||||| |||||||||| || |||| || ||| ATTACTAGTT TGCTATTATA TACAATTTTC CCA 475 hqPGS_C09HBa0047I13.1-_SGN-E379618+ (70827 70317) ******************************************************************************** EST sequence 51 +strand 530 n (File: SGN-E393065+) 1 TAAAATGTAT GTATATTGCA TAATTATAAG CGCATGGCAA GAATATATAT GTTTTTGTCT 61 CGCTTTATAC TAAAACAAAA ACACAATATA TACACTTCTG TTGTATAAAG TTAGACAAAA 121 TTGTATTTCA CTGCAATTAT ATAATTCACA ATTGCATAAT TCCTTGGCCT TTTTCACTGC 181 CATATTTGAA GTAAAATGTT TGTAATTTGT ATAATTAAGT GTATAACACG AAGATATATA 241 TTTTCACATG TGTATATACA ATTTTCTCTC GCTTTATACA AAATATAAAC ATAATCTATA 301 CACTTCTGTG TATATAACGA GATATGCCAG CGATAATGGA AAATGGCCAG CGAGATTTTT 361 GGGAGGCAGA CGCCTGACCA ACTTTAGCTA ACGTTTGCCA TGAAGCACAA TAAGATCTAA 421 CTCTATCTAC TCCATTTAGT TAGATTACTA GTTTGCTATT ATATACAATT TGTCCCATAG 481 CTTGTATAAA ATGGAGAGAA GGAAAAAGAT TTAGAATTAT CGCTTGTGAA Predicted gene structure (within gDNA segment 73076 to 67377): Exon 1 70828 70323 ( 506 n); cDNA 1 470 ( 470 n); score: 0.776 MATCH C09HBa0047I13.1- SGN-E393065+ 0.776 506 0.955 C PGS_C09HBa0047I13.1-_SGN-E393065+ (70828 70323) Alignment (genomic DNA sequence = upper lines): TAAAATGTAT GTATATTCCA TAATTATAAG TGTATAGCAA GAAGATATAT GTTTTTCTCT 70769 |||||||||| ||||||| || |||||||||| | || |||| ||| |||||| |||||| ||| TAAAATGTAT GTATATTGCA TAATTATAAG CGCATGGCAA GAATATATAT GTTTTTGTCT 60 CGCTTTATAC AAAAACAGAA ACACAATATT TACACTTCTG TTGTATAAAG CGAGAGAAAA 70709 |||||||||| |||||| || ||||||||| |||||||||| |||||||||| ||| |||| CGCTTTATAC TAAAACAAAA ACACAATATA TACACTTCTG TTGTATAAAG TTAGACAAAA 120 TCGTATTTCA TTGCAATTGT ATAATTCGTT GGCCTTTTTC GCTGCAATAA TTGTATAAAA 70649 | |||||||| ||||||| | ||||||| | | ||| |||| || | TTGTATTTCA CTGCAATTAT ATAATTC--- --AC--AAT- --TGC-ATAA TT-CCTTGGC 168 TTTGCATTTG TCTACAATTG AATTGAAGTA AAATGTTTGT AAATTGTATA ATTAAGTGTA 70589 || ||| || | | | | |||||||| |||||||||| || ||||||| |||||||||| CTT---TTTC ACTGCCA-T- ATTTGAAGTA AAATGTTTGT AATTTGTATA ATTAAGTGTA 223 TAACACGAAG ATATATATTT TTGCATGTAT ATATACAATT TTCTCTCGCT TTTTACAAAA 70529 |||||||||| |||||||||| | ||||| | |||||||||| |||||||||| || ||||||| TAACACGAAG ATATATATTT TCACATGTGT ATATACAATT TTCTCTCGCT TTATACAAAA 283 CA-GAACATA ATTTATACAC TTCTGTGTAT AAAAGCGAGA GAGGCGAACA GAGGGAGAGT 70470 | |||||| || ||||||| |||||||||| | || ||||| | || | || || | | TATAAACATA ATCTATACAC TTCTGTGTAT ATAA-CGAGA TATGC---C- -AGCGATAAT 337 GGCGAGCGAG AATGGGAGAG TGGTGAGCGA GATTTTTGGA GAGAGGCGAC TGACAAACTT 70410 | || | ||| || | | || || |||| ||| | || || | |||| ||||| -G-GA---A- AAT-GGCCA- --GCGA--GA -TTTTTGGGA GGCAGACGCC TGACCAACTT 384 TGGGTAATGT TTTCTACGGA ACACAATTAA ATCAAACCGT AGCAACTCCA TTTGTTTTAG 70350 | | ||| || || | | | | |||||| | ||| ||| | | | |||||| ||| |||| TAGCTAACGT TTGCCATGAA GCACAATAAG ATCTAACTCT ATCTACTCCA TTT-AGTTAG 443 GTTATTAGTT TGCTATTATA TATAATT 70323 ||| ||||| |||||||||| || |||| ATTACTAGTT TGCTATTATA TACAATT 470 hqPGS_C09HBa0047I13.1-_SGN-E393065+ (70828 70323) ******************************************************************************** EST sequence 69 +strand 450 n (File: SGN-E200845+) 1 AAAATGTATG TATATTGCAT AATTATAAGT GTATGGCAAG AATATATATG TTTTTGTCTC 61 GCTTTATACA AAAACAAAAA CACAATATAT ACACTTCTGT TGTATAAAGT TAGAGAAAAT 121 TGTATTTCAC TGCAATTATA TAATTCACAA TTGTATAATT CGTTGGCCTT TTTCTCTGCA 181 ATATTTGAAG TAAAATGTTT GTAATTTGTA TAATTAAGTG TATAACACGA AGATATATAT 241 TTTTACATGT GTATATACAA TTTTCTCTCG CTTTATACAA AATAGAAACA GAATTTATAC 301 ACTTCTGTGT ATATAGCGAG ATAGGCGAGC GAGAATGGAG AGTGGCGAGC GAGATTTTTG 361 GGAGGGAGAC GCCTGACAAA CTTTAGCTAA CGTTTGCTAT GGAGCACAAT TAAATCAAAC 421 TCTAGCTACT CCATTTAGTT AGATTACTAG Predicted gene structure (within gDNA segment 71427 to 68519): Exon 1 70827 70459 ( 369 n); cDNA 1 354 ( 354 n); score: 0.839 MATCH C09HBa0047I13.1- SGN-E200845+ 0.839 369 0.820 C PGS_C09HBa0047I13.1-_SGN-E200845+ (70827 70459) Alignment (genomic DNA sequence = upper lines): AAAATGTATG TATATTCCAT AATTATAAGT GTATAGCAAG AAGATATATG TTTTTCTCTC 70768 |||||||||| |||||| ||| |||||||||| |||| ||||| || ||||||| ||||| |||| AAAATGTATG TATATTGCAT AATTATAAGT GTATGGCAAG AATATATATG TTTTTGTCTC 60 GCTTTATACA AAAACAGAAA CACAATATTT ACACTTCTGT TGTATAAAGC GAGAGAAAAT 70708 |||||||||| |||||| ||| |||||||| | |||||||||| ||||||||| ||||||||| GCTTTATACA AAAACAAAAA CACAATATAT ACACTTCTGT TGTATAAAGT TAGAGAAAAT 120 CGTATTTCAT TGCAATTGTA TAATTCGTTG GCCTTTTTCG CTGCAATAAT TGTATAAAAT 70648 |||||||| ||||||| || |||||| | || | | ||| | || | TGTATTTCAC TGCAATTATA TAATTC---- -AC-AATT-G -TATAAT--T CGT-T-GGCC 168 TTGCATTTGT CTACAATTGA ATTGAAGTAA AATGTTTGTA AATTGTATAA TTAAGTGTAT 70588 || ||| | || ||| | | ||||||||| |||||||||| | |||||||| |||||||||| TT---TTTCT CTGCAA-T-A TTTGAAGTAA AATGTTTGTA ATTTGTATAA TTAAGTGTAT 223 AACACGAAGA TATATATTTT TGCATGTATA TATACAATTT TCTCTCGCTT TTTACAAAAC 70528 |||||||||| |||||||||| | ||||| || |||||||||| |||||||||| | ||||||| AACACGAAGA TATATATTTT TACATGTGTA TATACAATTT TCTCTCGCTT TATACAAAAT 283 AG-AACATAA TTTATACACT TCTGTGTATA AAAGCGAGAG AGGCGAAC-A G-AGGGAGAG 70471 || |||| || |||||||||| ||||||||| | ||||||| |||||| | | | | |||||| AGAAACAGAA TTTATACACT TCTGTGTAT- ATAGCGAGAT AGGCGAGCGA GAATGGAGAG 342 TGGCGAGCGA GA 70459 |||||||||| || TGGCGAGCGA GA 354 hqPGS_C09HBa0047I13.1-_SGN-E200845+ (70827 70459) ******************************************************************************** EST sequence 53 +strand 325 n (File: SGN-E393076+) 1 TAAAATGTAT GTATATTGCA TAATTATAAG TGTATGGCAA GAATATATAT GTTTTTGTCT 61 CGCTTTATAC AAAAACAAAA ACACAATATA TACACTTCTG TTGTATAAAG TTAGAGAAAA 121 TTGTATTTCA CTGCAATTAT ATAATTCACA ATTGTATAAT TCGTTGGCCT TTTTCTCTGC 181 AATATTTGAA GTAAAATGTT TGTAATTTGT ATAATTAAGT GTATAACACG AAGATATATA 241 TTTTTACATG TGTATATACA ATTTTCTCTC GCTTTATACA AAATAAAAAC AGAATTTATT 301 TTTTTTTGTG TATATAGCGA GATAG Predicted gene structure (within gDNA segment 71428 to 69427): Exon 1 70828 70487 ( 342 n); cDNA 1 325 ( 325 n); score: 0.829 MATCH C09HBa0047I13.1- SGN-E393076+ 0.829 342 1.052 C PGS_C09HBa0047I13.1-_SGN-E393076+ (70828 70487) Alignment (genomic DNA sequence = upper lines): TAAAATGTAT GTATATTCCA TAATTATAAG TGTATAGCAA GAAGATATAT GTTTTTCTCT 70769 |||||||||| ||||||| || |||||||||| ||||| |||| ||| |||||| |||||| ||| TAAAATGTAT GTATATTGCA TAATTATAAG TGTATGGCAA GAATATATAT GTTTTTGTCT 60 CGCTTTATAC AAAAACAGAA ACACAATATT TACACTTCTG TTGTATAAAG CGAGAGAAAA 70709 |||||||||| ||||||| || ||||||||| |||||||||| |||||||||| |||||||| CGCTTTATAC AAAAACAAAA ACACAATATA TACACTTCTG TTGTATAAAG TTAGAGAAAA 120 TCGTATTTCA TTGCAATTGT ATAATTCGTT GGCCTTTTTC GCTGCAATAA TTGTATAAAA 70649 | |||||||| ||||||| | ||||||| | || | | |||| || | TTGTATTTCA CTGCAATTAT ATAATTC--- --AC-AATT- G-T---ATAA TTC-GTTGGC 168 TTTGCATTTG TCTACAATTG AATTGAAGTA AAATGTTTGT AAATTGTATA ATTAAGTGTA 70589 || ||| ||| ||| | | |||||||| |||||||||| || ||||||| |||||||||| CTT---TTTC TCTGCAA-T- ATTTGAAGTA AAATGTTTGT AATTTGTATA ATTAAGTGTA 223 TAACACGAAG ATATATATTT TTGCATGTAT ATATACAATT TTCTCTCGCT TTTTACAAAA 70529 |||||||||| |||||||||| || ||||| | |||||||||| |||||||||| || ||||||| TAACACGAAG ATATATATTT TTACATGTGT ATATACAATT TTCTCTCGCT TTATACAAAA 283 -CAGAACATA ATTTATACAC TTCTGTGTAT AAAAGCGAGA GAG 70487 | |||| | |||||| || ||||||| | ||||||| || TAAAAACAGA ATTTATTTTT TTTTGTGTAT -ATAGCGAGA TAG 325 hqPGS_C09HBa0047I13.1-_SGN-E393076+ (70828 70487) ******************************************************************************** EST sequence 52 +strand 308 n (File: SGN-E393075+) 1 TAAAATGTAT GTATATTGCA TAATTATAAG TGTATGGCAA GAATATATAT GTTTTTGTCT 61 CGCTTTATAC AAAAACAAAA ACACAATATA TACACTTCTG TTGTATAAAG TTAGAGAAAA 121 TTGTATTTCA CTGCAATTAT ATAATTCACA ATTGTATAAT TCGTTGGCCT TTTTCTCTGC 181 AATATTTGAA GTAAAATGTT TGTAATTTGT ATAATTAAGT GTATAACACG AAGATATATA 241 TTTTTACATG TGTATATACA ATTTTCTCTC GCTTTATACA AAATAGAAAC AGAGGTTTTT 301 TTTTTTTT Predicted gene structure (within gDNA segment 71428 to 69597): Exon 1 70828 70524 ( 305 n); cDNA 1 288 ( 288 n); score: 0.849 MATCH C09HBa0047I13.1- SGN-E393075+ 0.849 305 0.990 C PGS_C09HBa0047I13.1-_SGN-E393075+ (70828 70524) Alignment (genomic DNA sequence = upper lines): TAAAATGTAT GTATATTCCA TAATTATAAG TGTATAGCAA GAAGATATAT GTTTTTCTCT 70769 |||||||||| ||||||| || |||||||||| ||||| |||| ||| |||||| |||||| ||| TAAAATGTAT GTATATTGCA TAATTATAAG TGTATGGCAA GAATATATAT GTTTTTGTCT 60 CGCTTTATAC AAAAACAGAA ACACAATATT TACACTTCTG TTGTATAAAG CGAGAGAAAA 70709 |||||||||| ||||||| || ||||||||| |||||||||| |||||||||| |||||||| CGCTTTATAC AAAAACAAAA ACACAATATA TACACTTCTG TTGTATAAAG TTAGAGAAAA 120 TCGTATTTCA TTGCAATTGT ATAATTCGTT GGCCTTTTTC GCTGCAATAA TTGTATAAAA 70649 | |||||||| ||||||| | ||||||| | || | | |||| || | TTGTATTTCA CTGCAATTAT ATAATTC--- --AC-AATT- G-T---ATAA TTC-GTTGGC 168 TTTGCATTTG TCTACAATTG AATTGAAGTA AAATGTTTGT AAATTGTATA ATTAAGTGTA 70589 || ||| ||| ||| | | |||||||| |||||||||| || ||||||| |||||||||| CTT---TTTC TCTGCAA-T- ATTTGAAGTA AAATGTTTGT AATTTGTATA ATTAAGTGTA 223 TAACACGAAG ATATATATTT TTGCATGTAT ATATACAATT TTCTCTCGCT TTTTACAAAA 70529 |||||||||| |||||||||| || ||||| | |||||||||| |||||||||| || ||||||| TAACACGAAG ATATATATTT TTACATGTGT ATATACAATT TTCTCTCGCT TTATACAAAA 283 CAGAA 70524 |||| TAGAA 288 hqPGS_C09HBa0047I13.1-_SGN-E393075+ (70828 70524) ******************************************************************************** EST sequence 5 -strand 680 n (File: SGN-E379427-) 1 AAAACTTGCA AAACGGAATG GGCCTATTCA CATCAGATCA AGTTTTGTTC ACAGACCAAA 61 GGTCTAAAGG TACTGTTAAT TTGTGGGCCA GTAATTCTAA AGTTTTTGAA ACCGCATTTG 121 TTAATGCGAT GACTAAATTG GGCCGAGTTG GTGTGAAGAC GGGTAAGAAT GGAAATATTC 181 GTATAGACTG TGGAGCATTT AATTAAGGGC AACTTTCACG TATAGCAAAT AAAAAATTCA 241 TATTTGTATG TTATAACAAA GTTTGCATAA TTGCGCTCCA TAGCAAACAT AAAACTGTAT 301 AATTCGCTAT ACATATACAA TTGTATAATT CGCTGGCCTA AATTGTATAA TTTGATGGCC 361 TATTTCGCTG CAATTGTATA ATTCGCTATC TTCATTCACT GCGATTGTGT AATGCACAAT 421 CGTATAAATC GCTGCTTATT TCGCTGCAAT ATTTTTATAA ATTTGCTTTG CATACCGTTG 481 AATCGAATTA AAATGTATGT ATATTGCATA ATTATAAGTG TATGGCAAGA ATATATATGT 541 TTTTGTCTCG CTTTATACAA AAACAAAAAC ACAATATATA CACTTCTGTT GTATAAAGTT 601 AGAGAAAATT GTATTTCACT GCAATTATAT AATTCACAAT TGTATAATTC GTTGCCCTTT 661 TTCTGAACAA TATTTGAAGT Predicted gene structure (within gDNA segment 73896 to 69299): Exon 1 70945 70682 ( 264 n); cDNA 375 635 ( 261 n); score: 0.860 MATCH C09HBa0047I13.1- SGN-E379427- 0.860 264 0.388 C PGS_C09HBa0047I13.1-_SGN-E379427- (70945 70682) Alignment (genomic DNA sequence = upper lines): TGTATAATTC GCTATACATA TACAATTGTA TAATTCACTG GCCTAAATTG TATAATTCGC 70886 |||||||||| ||||| | | || | | | | | || | ||| | ||||| |||| TGTATAATTC GCTATCTTCA TTCACTGCGA TTGTGTAATG --CACAATCG TATAAATCGC 432 TTCCTATTTC GCTGCAATAT TTCTATAAAA TTTGCTTTGC ATACAATTGA ATCGAATTAA 70826 | | |||||| |||||||||| || ||| ||| |||||||||| |||| |||| |||||||||| TGCTTATTTC GCTGCAATAT TTTTAT-AAA TTTGCTTTGC ATACCGTTGA ATCGAATTAA 491 AATGTATGTA TATTCCATAA TTATAAGTGT ATAGCAAGAA GATATATGTT TTTCTCTCGC 70766 |||||||||| |||| ||||| |||||||||| || ||||||| ||||||||| ||| |||||| AATGTATGTA TATTGCATAA TTATAAGTGT ATGGCAAGAA TATATATGTT TTTGTCTCGC 551 TTTATACAAA AACAGAAACA CAATATTTAC ACTTCTGTTG TATAAAGCGA GAGAAAATCG 70706 |||||||||| |||| ||||| |||||| ||| |||||||||| ||||||| | |||||||| | TTTATACAAA AACAAAAACA CAATATATAC ACTTCTGTTG TATAAAGTTA GAGAAAATTG 611 TATTTCATTG CAATTGTATA ATTC 70682 ||||||| || ||||| |||| |||| TATTTCACTG CAATTATATA ATTC 635 hqPGS_C09HBa0047I13.1-_SGN-E379427- (70945 70682) ******************************************************************************** EST sequence 4 -strand 680 n (File: SGN-E379333-) 1 ATCGAATTAA ATAAGCTATG TGTATATATT AAATGTAGAG GAGAAAGAGA GGGAATAATT 61 TAGAATTAAG GGTAAAATAA AATGGTTCAT ATTATATTTT TTAATGGGTC GGGTTAGGTG 121 GGTGGATCAC TAAATAGTAT TTTTTATTTT TTTAAAAAAT TTTGATTTGT TATATAAACA 181 ATTAACGTAA ATAAATTTTA ATTTAAAAAG TAATTTAATA GATTGAGTGA CTTGAGGAAA 241 AAATAAATAG TTGAGTCACT TTTGAGTTAA AATTCAAAGT TGAGTCACTT TTTGAGAAAT 301 GTATGGATAA TTGAATACTT TTAAGGAAAA ATTGAAAGTT GAGTGACTTT TTGAGAGAAA 361 GTATGGGTGG AATCCCCCGA GAAGAGTTAG AATGACCGTT CCCGCTCCTT CGGCGATACC 421 AAACAAATGA CTATTTGAAT CGGGGTTTTG AGCACAAAGA TTAGTTGAAT GACCATCTAA 481 AGTATTAACT CGGAGATAAA CTGATTTTGG AAGAACTATT TTCATATGTC CATGATACAT 541 TATTGGGCAA CTTTTACATA TAGCAAATAA AAAATTCATA TTTGTATGCT AGCAAACTTT 601 GCATAATTGC GCTGCATAGC AAACATAAAA CTGTATAATT TGCTATACAT ATACAATTGT 661 ATAATTCGCT GGCCTAAATT Predicted gene structure (within gDNA segment 78159 to 70180): Exon 1 77000 76987 ( 14 n); cDNA 477 490 ( 14 n); score: 0.643 Intron 1 76986 75617 (1370 n); Pd: 0.861 (s: 0), Pa: 0.000 (s: 0.68) Exon 2 75616 75577 ( 40 n); cDNA 491 529 ( 39 n); score: 0.675 Intron 2 75576 71065 (4512 n); Pd: 0.000 (s: 0.68), Pa: 0.000 (s: 0.80) Exon 3 71064 70897 ( 168 n); cDNA 530 680 ( 151 n); score: 0.839 MATCH C09HBa0047I13.1- SGN-E379333- 0.839 222 0.326 C PGS_C09HBa0047I13.1-_SGN-E379333- (77000 76987,75616 75577,71064 70897) Alignment (genomic DNA sequence = upper lines): CTTAATCTTT TACTGTAAGT CATAGTAATT CATGTATCTA TTGCAATTCC TTTTTTCTAT 76941 || || || ||| CTAAAGTATT AACT...... .......... .......... .......... .......... 490 TTTGATGTCT TTTTTCTTAA ACTTTGTTAA AAATTTTAAT GAGGATGATT GAAAATTTAT 76881 .......... .......... .......... .......... .......... .......... 490 CTTCTATTTT GTCTCTTACT ATAGTTTTAT TCGTATACTT TTTGGAAAAT TTCTTGTGGG 76821 .......... .......... .......... .......... .......... .......... 490 TTGTGCTATA TTTGATAGCA CAGAATAATT AAATATGTGA TAACTAATAC GTAATTGAAG 76761 .......... .......... .......... .......... .......... .......... 490 TTTGTTAAAA GAATAAAAAA GATTGTTCTC CTCTTTGCCA CAGTTAGTAT ACTATTTTGA 76701 .......... .......... .......... .......... .......... .......... 490 TTGCTCATTC TTAGGTACAA ACATTTTATA TTCCATTGTA CCTTTCTTAG AATATTAGTA 76641 .......... .......... .......... .......... .......... .......... 490 TACATACAAT CAGTTTACAT CTTTCATTGC AAGTTAACTA ATTTGTCATA TTTCTTCATC 76581 .......... .......... .......... .......... .......... .......... 490 TCTTCTTTTT AGGCATATAA GAGATCAAGT TTTCTTGAAA CTAACAGATG TCCAAAATAT 76521 .......... .......... .......... .......... .......... .......... 490 ACTAAAACAA AAATATTTTT ATCGAAAATG ACTATGCACA GTAACGAAGA GTTCTAGAGA 76461 .......... .......... .......... .......... .......... .......... 490 CTTTACCTAC ACTAATTAAT TGTCATTAGA TTCAACGTTA ATATAGATAC ATACCGACAA 76401 .......... .......... .......... .......... .......... .......... 490 ACTATCTTTT TGAAAAGTAT GTTAAGCAAC ATGCATAATT TCTTCTTGAT TGTTAAGAAA 76341 .......... .......... .......... .......... .......... .......... 490 GAAAGGTTTT GTTTATTATT ATTTGTGGAT ATTTGTGCTT ACAAGCAATC AAAAAAGTAT 76281 .......... .......... .......... .......... .......... .......... 490 GCTTTGAGAT TTTCACATGT TATGTGTAAA AAATTTGATT TAAAATATCC AGTGATGAAT 76221 .......... .......... .......... .......... .......... .......... 490 GATGTGGCAT ACTGCTTGGT TGATAATGAC ATTAATTCTT TGTAACTTCA TAATATAATC 76161 .......... .......... .......... .......... .......... .......... 490 ATAACAATAA TTATGGTTCA ATTCCAAATA AGTTGGGCTG GTGATATGAA ACCTAAGGAA 76101 .......... .......... .......... .......... .......... .......... 490 TATTAATGAC TATTCTTAAT TGATGAGGAC AAATATTTAT GATACTAATA ACTATTTTAG 76041 .......... .......... .......... .......... .......... .......... 490 GGTCATAAAA AAGGGGCCGA AGGTCCTCCA TTTGAATTAG TTAATTATAT TCTTGTATAA 75981 .......... .......... .......... .......... .......... .......... 490 ATGTGATGTT CCACTTTACT TGGGAGTGTT GTTGTTCGAG GATTTTTGGT CTCTTCTTTA 75921 .......... .......... .......... .......... .......... .......... 490 ATGTTTGATG TTGTTCTTTA TAAGTTCTTG GAATTTAGAA AATTTCATTA CTTCTGACCA 75861 .......... .......... .......... .......... .......... .......... 490 ACTATTTCCA TGGAGATTTC TTAGACTTCT TTATTATACT TAAAATATCT CTATGACTCA 75801 .......... .......... .......... .......... .......... .......... 490 TAATTTTAAT ATAAAAAAAA TCAAAAAACA AAATATAACA CTTTTAAGAT TTTGCATTGC 75741 .......... .......... .......... .......... .......... .......... 490 TTAAGATATA ATGATTTTGA CGATATAGTG TATATATAAA AAATCTGAAT ATTACTAAAT 75681 .......... .......... .......... .......... .......... .......... 490 GATCAATATG AGCTTAATAA CATACAGTTC AATCTCATGA GAAGCACGGG TAATTTACCT 75621 .......... .......... .......... .......... .......... .......... 490 AGTTCTGATA TAAAATATGT TCTTGAATGA CTTTTATAAT ATGTATTCAT TAATTGATTC 75561 | || | |||| | | | | ||| | || || | || |||| ....CGGAGA TAAACTGATT T-TGGAAGAA CTATTTTCAT ATGT...... .......... 529 CCAAATTTAG TTAATATGGA ATAGAGGGAG TATCCTTTAT TTGTCATTGT TATTATTACT 75501 .......... .......... .......... .......... .......... .......... 529 TGTACTACTT TCTCTATTTC AATTTATGTG ACACACTTTT CATTAGTTAG TTCAAAAAGG 75441 .......... .......... .......... .......... .......... .......... 529 AATGACATAT TTTTCATATT TGACAAATGT TTATTGACCC TGTCAATATT ATTTGGAAAA 75381 .......... .......... .......... .......... .......... .......... 529 TCTTCCATAA ACGTGTACTC TTCTATTTAA AAACATATTT GGTTTAAGGG TAATTTTGTA 75321 .......... .......... .......... .......... .......... .......... 529 CCATTAAAAA ATCTTTTCAT ATTTTATAAA TCTCATGCAA AATACATCTC ATAAATTAAG 75261 .......... .......... .......... .......... .......... .......... 529 CAAAAGTAAT TAATTTGCAC GCGCAATTAT TAATAAATTA TCTTATAAAT TTTATTATTT 75201 .......... .......... .......... .......... .......... .......... 529 AAAGATAGCT TTCTATCAAT AAATAATGTC TAATCTATGA ATTCAGCAAT ACTACTTTTT 75141 .......... .......... .......... .......... .......... .......... 529 ACACGATAAT TTGAAATTTT GAATCTTACA TAAGAATTTA TACTCTAAAT AAAAGATATA 75081 .......... .......... .......... .......... .......... .......... 529 GAGTTTGGTG CTGTTGCACA CACACTTGTA TTTTAGTGAG TATTGCAAGG TGTGTAAGAT 75021 .......... .......... .......... .......... .......... .......... 529 TGAAAAAAAT TATACCATTA AATGTGAAAA TTGACGATAA ATTTTTAAAT CAAAATCCAT 74961 .......... .......... .......... .......... .......... .......... 529 TTGGTTTAGT GGTAAAATTA GTTAGAATAT TTTTCCCTGT GTTGGTTTAT TTAATTTCTC 74901 .......... .......... .......... .......... .......... .......... 529 ATGAAATACT ATAGTAGATT TAACCAAAAA AATAAAAATA GGATAAACAT GATAACAGTT 74841 .......... .......... .......... .......... .......... .......... 529 AAATTTTGAA ACAAGAATTG AATTAGCAAT AGAATATCAA ATAATTTCAG GTAATTCATA 74781 .......... .......... .......... .......... .......... .......... 529 AGTAAAGATG CTCCTCCAAA AGAGAGTAAT AAAAGGCTAT AACTATTTTC TTTTTAATTT 74721 .......... .......... .......... .......... .......... .......... 529 AACACTAAGA TGGTGACATA CTTACATTGA AGTTTCATTA AAAGAGTCTA CAGTAACATT 74661 .......... .......... .......... .......... .......... .......... 529 ATTTTGATCA ATCATTATTT TGTATATTCA ATAGCATTTA GCAACTCTTT ATTCTGCAAA 74601 .......... .......... .......... .......... .......... .......... 529 AAACAAACAA ACATAAAAAT GTGTTTATCG TATATATACA GGATATCTAT TATACATATT 74541 .......... .......... .......... .......... .......... .......... 529 TTTAAATTTA AATATATATC ATGAGATGAA AACTAACTTT TTCAATTTGT TGATCAACCT 74481 .......... .......... .......... .......... .......... .......... 529 CCTCAGATAA CTTTTATACT TCAAAAGTTA AACAAGTAAA TGTACTTCTC CTCTAAATCA 74421 .......... .......... .......... .......... .......... .......... 529 ACATTGTGTT GGAAGCATGC TGAAATATTC TAAGTGTTGG AAGTTAGGCT AAAAAAATTC 74361 .......... .......... .......... .......... .......... .......... 529 TAAGTGTTGA AATAAGCTGA AATATGCCAA ATGTTGGAAC AGACTGATAT ACTTTAAGTG 74301 .......... .......... .......... .......... .......... .......... 529 TTAGAATGGT TAATTTTTGT TATTCTTTAG AATGTATTTT GAATTTGAAA ATATTCTATA 74241 .......... .......... .......... .......... .......... .......... 529 TGTTAGAATA TTTAGTGCTG AAACTTAGTT TGAATTATGT GAGACAAGTT TTAGACACGT 74181 .......... .......... .......... .......... .......... .......... 529 GTCAGATGTA ACCGCCTATG TAACTTTTGT AACTGCCTTG TGCAAAACTT TTATATAGGG 74121 .......... .......... .......... .......... .......... .......... 529 TGGAAATTCG TCTAAGGCAA AGGAGAATGA TTCTGGTCTT AGATTAATTT GTGAAGCCTT 74061 .......... .......... .......... .......... .......... .......... 529 ATCCTTTGTT GATTTGTTAT TAGTAAAAGG TTGGGAAGAA TTACCGTATA TTGGATATGT 74001 .......... .......... .......... .......... .......... .......... 529 TGTTACTTTG ATTGTTGCCT AAAAAAACTA AATTAAGTCT TTCTATACTT AGTCAAATTT 73941 .......... .......... .......... .......... .......... .......... 529 GTGTGAGTGT AAGATTGAAG TTTGCAAGAG TTGTAGACTA TCTGGGAATG GTGTTAGATA 73881 .......... .......... .......... .......... .......... .......... 529 AAAAAAATAT CGACCCTCTT TCAGTTTGCA TGGATTCACA AATTAAGTTA ATATGAAATA 73821 .......... .......... .......... .......... .......... .......... 529 AATGGAGTAC TCTTTATTTA TCATCATAAT TATTACTTGT ACTTCTTCTC TATTCCAAAT 73761 .......... .......... .......... .......... .......... .......... 529 TTATGTGACA CACTTTTCAT TAATCAGTTT ATAAAAGAAT AACTAATGTA TCACCATATA 73701 .......... .......... .......... .......... .......... .......... 529 ACATGTGTTT TACTTCATTC AATCACATAA TAATGAAAAT TGTATTAGTT TGATGTATAC 73641 .......... .......... .......... .......... .......... .......... 529 ACCTGGTGCG GATAATATTT TTCTTTCATA TTTTTGTGTT TTACTAATGT TTAATGACCC 73581 .......... .......... .......... .......... .......... .......... 529 TATCAATATT ATTTGGAAAA ATCATCCTAG GTATATATTT AAGATTCTAT ATTACATCAT 73521 .......... .......... .......... .......... .......... .......... 529 ACAAATATAC TAATAAGAAA TTATTAATAT ACCAACTTAA TTACCTGTGA TAACAAATTT 73461 .......... .......... .......... .......... .......... .......... 529 GAATTAATTT AAATTTATAT TTTATTAATT ATTTATTATT TTCTTATTTA ATGTTGGATA 73401 .......... .......... .......... .......... .......... .......... 529 GAGAAAACAA ACGCCGTGTT CTTTTTATGG CAGTTACCAA GATATTATCT AACCATAATT 73341 .......... .......... .......... .......... .......... .......... 529 TAGAAATTTC ACGACCCAAA TTAACAAGTC GTGATGTTAT CTATGACCCC AACCAATAGG 73281 .......... .......... .......... .......... .......... .......... 529 TAAGCCAACC CAACACATTT TACCAACTTT AACTAAATAG TGAGAAAAGA ATAAACACTA 73221 .......... .......... .......... .......... .......... .......... 529 AGTGAAAATC TCCAACATAA AGCTCTTTAT AAGTACGAAC TGCGGAAAGC TAAAAATACC 73161 .......... .......... .......... .......... .......... .......... 529 ACTCCAAGAA TTGTTGTCAT AAGTACAAGA GCTTCTAAAA CACGATGCAA GTCTGAAACT 73101 .......... .......... .......... .......... .......... .......... 529 AAAATGACAC ATCTAACATA GGGATATCCT TTTTGAATAC TAAAAAAAAC AGAATAAGTA 73041 .......... .......... .......... .......... .......... .......... 529 AATGATAGAG GGAGGTGTGG GCCACGGAAC AGCCAAGAAG CTAACCACAA CTCCAAGACA 72981 .......... .......... .......... .......... .......... .......... 529 CTCCAAGCTC GGACTCAATT TGTTCCAAGA GATTTGCTCG TACTCATAAT CGAATCTGCA 72921 .......... .......... .......... .......... .......... .......... 529 CAACAAAGAG TGCAACAAGT GTAGTATGAG TACGAAACCA CGTTTACTCA ATATATCTCA 72861 .......... .......... .......... .......... .......... .......... 529 TTGACCGACA ATGAAGATTT GTGAAGGGAG TTTTTATAAG AAAAACAATT CTTTAATTGT 72801 .......... .......... .......... .......... .......... .......... 529 ACAAGTTTAT ATTACACTTA CTAGTCAAGT TTCATCAAAT AGAGGTAATC AAATATCAAG 72741 .......... .......... .......... .......... .......... .......... 529 TACTTTCCAA CCACCACATA AAACACATAA TCAGAAAAAA ATGAATGATG TGATGAAATG 72681 .......... .......... .......... .......... .......... .......... 529 CAATGCAATA TAATGCCATG AAATGGTATG TCTCGGAATT CTGAGCCCTC TCTTAACCAT 72621 .......... .......... .......... .......... .......... .......... 529 ATATACATGA TACTCCTCAT AATTACATCG AGAGTTCATG ACCCATCGGG AACTTGCGAG 72561 .......... .......... .......... .......... .......... .......... 529 GTCCATATAT AGACACGAAC GATCTTCACG TGTCTGTGCG AACGATATCA AGGCACTATC 72501 .......... .......... .......... .......... .......... .......... 529 ATAAATCAAA TAATTTTCCA TGGACGATCT CCATGTGCCT TAAGTAGAAT CTTTAATTTC 72441 .......... .......... .......... .......... .......... .......... 529 ACCATCCCTA GCACGGACGA TCTCCACGTG CCCAACTTAT ACTCAATCTC ATGTCAATGC 72381 .......... .......... .......... .......... .......... .......... 529 ATATACACAA TATAATTTCC ATAAAGGGGA TGATGATGCA CCTCAATCAG TCAAATATCA 72321 .......... .......... .......... .......... .......... .......... 529 ACATAATACA TAACCAACTC AATTATCACA ATTATACGGA TGTAATAAAG AAAACAAAAT 72261 .......... .......... .......... .......... .......... .......... 529 CACACAAGGA TTTCAAGTCA ATAATATATC AGCTAATGCC CTTATGCTTT GGCATTCTCA 72201 .......... .......... .......... .......... .......... .......... 529 AATTACAATC CACATTCTAT ACTAGTGACT TTCCCTTTTA TAATACTGGT ACTCGTACTA 72141 .......... .......... .......... .......... .......... .......... 529 ATGTCCTCAC ACAATTTATA CGAGACCCCC ATCTTTTGTC CTTACCCTTT GTCTATTTCA 72081 .......... .......... .......... .......... .......... .......... 529 TTTTTAATCT TTAATTTGGA AAACATCATT CAACAAGTCC AAAAGGTCTT AGCATACCTT 72021 .......... .......... .......... .......... .......... .......... 529 AAATGCCGAA CCTCGTGCCA CGAATCTTCA AGATTTTTTC TTTACTTTTC GCAAAGTTTT 71961 .......... .......... .......... .......... .......... .......... 529 GAAACGTTCC CAATCTATCA ATTATGCGAT ATTCATATGT AAGCAGCTTT GTAGACATTC 71901 .......... .......... .......... .......... .......... .......... 529 AAATTATTAT ATGTCTATCA TAGACCCTAA AACCCACTCA TATCTCTAAC CAAGCTTTAA 71841 .......... .......... .......... .......... .......... .......... 529 ATCTTGATAT AATTTATATG TCAAAATTAT CATATATGCT AAATTTCAAG TCCAAAATTG 71781 .......... .......... .......... .......... .......... .......... 529 AACTTTAAGC TCTCCAAATA TCCTTAAATT TGATATTAAA TCATATAATA TATACCTAAT 71721 .......... .......... .......... .......... .......... .......... 529 AATTAATTAT CTATCTCAAT ATATCAAAAC TATTGTCTTA ATTTGATAAA ATAAATATAA 71661 .......... .......... .......... .......... .......... .......... 529 TAAGGATCAA TTCCACCAAT TAACAGCACC AGACAAAGCA CATAAAATCG ACAACGTTAC 71601 .......... .......... .......... .......... .......... .......... 529 CCATTTTTCA AATCCATTTT GTACAAAAAA AATGCCTTCA ACTTTCAAAA AAAGAATCTA 71541 .......... .......... .......... .......... .......... .......... 529 ATAAATAACC ATTGGAACTA CACATTACAT TCAGGCAGAA TATAATTGTT GGCATTGACT 71481 .......... .......... .......... .......... .......... .......... 529 ATCAATTTCC AATGATTACC TAATCATTGT TTAATGATTT AATTTAATAA AATAACATTT 71421 .......... .......... .......... .......... .......... .......... 529 TTCCTAGCCT AGTTCAGCAA ACATTGCCAC ATACGTATTC CACTTTCCAC TTCCCTTTCT 71361 .......... .......... .......... .......... .......... .......... 529 TGCAATTAAG ACAAATCAAC CAACACCATT GGAAATTCAC CACCATAATT TAGTAAATCC 71301 .......... .......... .......... .......... .......... .......... 529 TAAAAAAAGT TTAATCACTC ATATCAGGTC CTTATTCGAT CCAACCATTT TATTATCCAT 71241 .......... .......... .......... .......... .......... .......... 529 CTATTCTGAC TAGCCTTCCC ACTAGAAAAG AAATTGAATC ACATACTAAA AATAAATATT 71181 .......... .......... .......... .......... .......... .......... 529 ATTATACTAC TACAGCTGCA TTGCATAATT TGCATATACA AATTGATGGA ATTTAAAGTA 71121 .......... .......... .......... .......... .......... .......... 529 CTTACCAGGA TAACCGACGA AACCGTGTAG CCAACCACTA TTCTTAAAAT CTTGAGTTAT 71061 || .......... .......... .......... .......... .......... ......CCAT 533 GAATAAATTA TTAAGGGAAA TTTTCACATA TAGAAAATAA AAAATTCATA TTTGTATGCT 71001 | ||| |||| || ||| || ||| ||||| ||| |||||| |||||||||| ||||||||| G-ATACATTA TT--GGGCAA CTTTTACATA TAGCAAATAA AAAATTCATA TTTGTATGC- 589 ATAGCAAAGT TTATAGCAAA GTTTGCATAA TTGCGCTCCA TAGCAAACAT AAAACTGTAT 70941 |||| | | | | ||||||||| ||||||| || |||||||||| |||||||||| -TAGC--A-- --A-A-C--- -TTTGCATAA TTGCGCTGCA TAGCAAACAT AAAACTGTAT 636 AATTCGCTAT ACATATACAA TTGTATAATT CACTGGCCTA AATT 70897 |||| ||||| |||||||||| |||||||||| | |||||||| |||| AATTTGCTAT ACATATACAA TTGTATAATT CGCTGGCCTA AATT 680 hqPGS_C09HBa0047I13.1-_SGN-E379333- (71064 70897) ******************************************************************************** EST sequence 16 -strand 372 n (File: SGN-E200682-) 1 AATTGAATAC TTTTAAGGAA AAATTGAAAG TTGAGTGACT TTTTGAGAGA AAGTATGGGT 61 GGAATCCCCC GAGAAGAGTT AGAATGACCG TTCCCGCTCC TTCGGCGATA CCAAACAAAT 121 GACTATTTGA ATCGGGGTTT TGAGCACAAA GATTAGTTGA ATGACCATCT AAAGTATTAA 181 CTCGGAGATA AACTGATTTT GGAAGAACTA TTTTCATATG TCCATGATAC ATTATTGGGC 241 AACTTTTACA TATAGCAAAT AAAAAATTCA TATTTGTATG CTAGCAAACT TTGCATAATT 301 GCGCTGCATA GCAAACATAA AACTGTATAA TTTGCTATAC ATATACAATT GTATAATTCG 361 CTGGCCTAAA TT Predicted gene structure (within gDNA segment 74479 to 70180): Exon 1 71058 70897 ( 162 n); cDNA 227 372 ( 146 n); score: 0.852 MATCH C09HBa0047I13.1- SGN-E200682- 0.852 162 0.435 C PGS_C09HBa0047I13.1-_SGN-E200682- (71058 70897) Alignment (genomic DNA sequence = upper lines): ATAAATTATT AAGGGAAATT TTCACATATA GAAAATAAAA AATTCATATT TGTATGCTAT 70999 ||| |||||| ||| || | || ||||||| | |||||||| |||||||||| ||||||| | ATACATTATT --GGGCAACT TTTACATATA GCAAATAAAA AATTCATATT TGTATGC--T 282 AGCAAAGTTT ATAGCAAAGT TTGCATAATT GCGCTCCATA GCAAACATAA AACTGTATAA 70939 ||| | | | | | |||||||||| ||||| |||| |||||||||| |||||||||| AGC--A---- A-A-C----T TTGCATAATT GCGCTGCATA GCAAACATAA AACTGTATAA 330 TTCGCTATAC ATATACAATT GTATAATTCA CTGGCCTAAA TT 70897 || ||||||| |||||||||| ||||||||| |||||||||| || TTTGCTATAC ATATACAATT GTATAATTCG CTGGCCTAAA TT 372 hqPGS_C09HBa0047I13.1-_SGN-E200682- (71058 70897) ******************************************************************************** EST sequence 25 -strand 666 n (File: SGN-E371327-) 1 AGGGTTGTGT TGACTCAAAT TCCAAGGGTG TGGATAGTGT ACATGGTTCA AGTGATGCTG 61 TTGAAGCTGC TAAGTCCATC GCTCAACAAA GTGGTAGTGT AGTCGCTGTT TCTGGAGCTG 121 TTGACTATAT CACAGACGGT GATAGGGTTG TTTGTGTTCA CAATGGGGTG CCTATGTTGC 181 AAAAGATTAC TGCATCTGGA TGTTCAGTCA CTGCCCTCAT TGCTGCCTTT GTCGCTGTTG 241 ATCCATCCCA TGCTGTGGAA GCAACAGCTT CTGCATTGGC TATATTTGGT GTCGCAAGTG 301 AAACAGGGAT GGACATGGCT AGAGGTCCAG CTTCACTGCG GACACTGTTG ATTGATTCGT 361 TATATGGACT TGGGGAAGCT ACTGCACTTA GTCGAGTAAG AATCAACCAC CTTTAATGCT 421 TTTAGACGAG AAATCAATGT GTCCATTTCA TTTAAATCTA ACTCTCATTT ATTTTTGGGC 481 AACTTTTTTC ACATACAGCA AACAAAAAAT TCATATTTGT ATGCTATAGC AAACTTCGCA 541 TAATTGCGTT CCATAGCAAA CATAAAATTG TATAATTCGC TATACATATA CAATTGTATA 601 ATTCGCTATC CTATTTCACT GCAATTGTAT AATGCACAAT TGTATAATTC GCTGCCTAAA 661 AAAAAA Predicted gene structure (within gDNA segment 76662 to 69690): Exon 1 74977 74950 ( 28 n); cDNA 451 479 ( 29 n); score: 0.696 Intron 1 74949 72112 (2838 n); Pd: 0.540 (s: 0), Pa: 0.000 (s: 0) Exon 2 72111 72104 ( 8 n); cDNA 480 487 ( 8 n); score: 0.875 Intron 2 72103 71039 (1065 n); Pd: 0.693 (s: 0), Pa: 0.000 (s: 0.82) Exon 3 71038 70907 ( 132 n); cDNA 488 607 ( 120 n); score: 0.856 MATCH C09HBa0047I13.1- SGN-E371327- 0.856 168 0.252 C PGS_C09HBa0047I13.1-_SGN-E371327- (74977 74950,72111 72104,71038 70907) Alignment (genomic DNA sequence = upper lines): TTTAAATCAA AATC-CATTT GGTTTAGTGG TAAAATTAGT TAGAATATTT TTCCCTGTGT 74919 |||||||| | | || ||||| ||| | | TTTAAATCTA ACTCTCATTT ATTTTTGGG. .......... .......... .......... 479 TGGTTTATTT AATTTCTCAT GAAATACTAT AGTAGATTTA ACCAAAAAAA TAAAAATAGG 74859 .......... .......... .......... .......... .......... .......... 479 ATAAACATGA TAACAGTTAA ATTTTGAAAC AAGAATTGAA TTAGCAATAG AATATCAAAT 74799 .......... .......... .......... .......... .......... .......... 479 AATTTCAGGT AATTCATAAG TAAAGATGCT CCTCCAAAAG AGAGTAATAA AAGGCTATAA 74739 .......... .......... .......... .......... .......... .......... 479 CTATTTTCTT TTTAATTTAA CACTAAGATG GTGACATACT TACATTGAAG TTTCATTAAA 74679 .......... .......... .......... .......... .......... .......... 479 AGAGTCTACA GTAACATTAT TTTGATCAAT CATTATTTTG TATATTCAAT AGCATTTAGC 74619 .......... .......... .......... .......... .......... .......... 479 AACTCTTTAT TCTGCAAAAA ACAAACAAAC ATAAAAATGT GTTTATCGTA TATATACAGG 74559 .......... .......... .......... .......... .......... .......... 479 ATATCTATTA TACATATTTT TAAATTTAAA TATATATCAT GAGATGAAAA CTAACTTTTT 74499 .......... .......... .......... .......... .......... .......... 479 CAATTTGTTG ATCAACCTCC TCAGATAACT TTTATACTTC AAAAGTTAAA CAAGTAAATG 74439 .......... .......... .......... .......... .......... .......... 479 TACTTCTCCT CTAAATCAAC ATTGTGTTGG AAGCATGCTG AAATATTCTA AGTGTTGGAA 74379 .......... .......... .......... .......... .......... .......... 479 GTTAGGCTAA AAAAATTCTA AGTGTTGAAA TAAGCTGAAA TATGCCAAAT GTTGGAACAG 74319 .......... .......... .......... .......... .......... .......... 479 ACTGATATAC TTTAAGTGTT AGAATGGTTA ATTTTTGTTA TTCTTTAGAA TGTATTTTGA 74259 .......... .......... .......... .......... .......... .......... 479 ATTTGAAAAT ATTCTATATG TTAGAATATT TAGTGCTGAA ACTTAGTTTG AATTATGTGA 74199 .......... .......... .......... .......... .......... .......... 479 GACAAGTTTT AGACACGTGT CAGATGTAAC CGCCTATGTA ACTTTTGTAA CTGCCTTGTG 74139 .......... .......... .......... .......... .......... .......... 479 CAAAACTTTT ATATAGGGTG GAAATTCGTC TAAGGCAAAG GAGAATGATT CTGGTCTTAG 74079 .......... .......... .......... .......... .......... .......... 479 ATTAATTTGT GAAGCCTTAT CCTTTGTTGA TTTGTTATTA GTAAAAGGTT GGGAAGAATT 74019 .......... .......... .......... .......... .......... .......... 479 ACCGTATATT GGATATGTTG TTACTTTGAT TGTTGCCTAA AAAAACTAAA TTAAGTCTTT 73959 .......... .......... .......... .......... .......... .......... 479 CTATACTTAG TCAAATTTGT GTGAGTGTAA GATTGAAGTT TGCAAGAGTT GTAGACTATC 73899 .......... .......... .......... .......... .......... .......... 479 TGGGAATGGT GTTAGATAAA AAAAATATCG ACCCTCTTTC AGTTTGCATG GATTCACAAA 73839 .......... .......... .......... .......... .......... .......... 479 TTAAGTTAAT ATGAAATAAA TGGAGTACTC TTTATTTATC ATCATAATTA TTACTTGTAC 73779 .......... .......... .......... .......... .......... .......... 479 TTCTTCTCTA TTCCAAATTT ATGTGACACA CTTTTCATTA ATCAGTTTAT AAAAGAATAA 73719 .......... .......... .......... .......... .......... .......... 479 CTAATGTATC ACCATATAAC ATGTGTTTTA CTTCATTCAA TCACATAATA ATGAAAATTG 73659 .......... .......... .......... .......... .......... .......... 479 TATTAGTTTG ATGTATACAC CTGGTGCGGA TAATATTTTT CTTTCATATT TTTGTGTTTT 73599 .......... .......... .......... .......... .......... .......... 479 ACTAATGTTT AATGACCCTA TCAATATTAT TTGGAAAAAT CATCCTAGGT ATATATTTAA 73539 .......... .......... .......... .......... .......... .......... 479 GATTCTATAT TACATCATAC AAATATACTA ATAAGAAATT ATTAATATAC CAACTTAATT 73479 .......... .......... .......... .......... .......... .......... 479 ACCTGTGATA ACAAATTTGA ATTAATTTAA ATTTATATTT TATTAATTAT TTATTATTTT 73419 .......... .......... .......... .......... .......... .......... 479 CTTATTTAAT GTTGGATAGA GAAAACAAAC GCCGTGTTCT TTTTATGGCA GTTACCAAGA 73359 .......... .......... .......... .......... .......... .......... 479 TATTATCTAA CCATAATTTA GAAATTTCAC GACCCAAATT AACAAGTCGT GATGTTATCT 73299 .......... .......... .......... .......... .......... .......... 479 ATGACCCCAA CCAATAGGTA AGCCAACCCA ACACATTTTA CCAACTTTAA CTAAATAGTG 73239 .......... .......... .......... .......... .......... .......... 479 AGAAAAGAAT AAACACTAAG TGAAAATCTC CAACATAAAG CTCTTTATAA GTACGAACTG 73179 .......... .......... .......... .......... .......... .......... 479 CGGAAAGCTA AAAATACCAC TCCAAGAATT GTTGTCATAA GTACAAGAGC TTCTAAAACA 73119 .......... .......... .......... .......... .......... .......... 479 CGATGCAAGT CTGAAACTAA AATGACACAT CTAACATAGG GATATCCTTT TTGAATACTA 73059 .......... .......... .......... .......... .......... .......... 479 AAAAAAACAG AATAAGTAAA TGATAGAGGG AGGTGTGGGC CACGGAACAG CCAAGAAGCT 72999 .......... .......... .......... .......... .......... .......... 479 AACCACAACT CCAAGACACT CCAAGCTCGG ACTCAATTTG TTCCAAGAGA TTTGCTCGTA 72939 .......... .......... .......... .......... .......... .......... 479 CTCATAATCG AATCTGCACA ACAAAGAGTG CAACAAGTGT AGTATGAGTA CGAAACCACG 72879 .......... .......... .......... .......... .......... .......... 479 TTTACTCAAT ATATCTCATT GACCGACAAT GAAGATTTGT GAAGGGAGTT TTTATAAGAA 72819 .......... .......... .......... .......... .......... .......... 479 AAACAATTCT TTAATTGTAC AAGTTTATAT TACACTTACT AGTCAAGTTT CATCAAATAG 72759 .......... .......... .......... .......... .......... .......... 479 AGGTAATCAA ATATCAAGTA CTTTCCAACC ACCACATAAA ACACATAATC AGAAAAAAAT 72699 .......... .......... .......... .......... .......... .......... 479 GAATGATGTG ATGAAATGCA ATGCAATATA ATGCCATGAA ATGGTATGTC TCGGAATTCT 72639 .......... .......... .......... .......... .......... .......... 479 GAGCCCTCTC TTAACCATAT ATACATGATA CTCCTCATAA TTACATCGAG AGTTCATGAC 72579 .......... .......... .......... .......... .......... .......... 479 CCATCGGGAA CTTGCGAGGT CCATATATAG ACACGAACGA TCTTCACGTG TCTGTGCGAA 72519 .......... .......... .......... .......... .......... .......... 479 CGATATCAAG GCACTATCAT AAATCAAATA ATTTTCCATG GACGATCTCC ATGTGCCTTA 72459 .......... .......... .......... .......... .......... .......... 479 AGTAGAATCT TTAATTTCAC CATCCCTAGC ACGGACGATC TCCACGTGCC CAACTTATAC 72399 .......... .......... .......... .......... .......... .......... 479 TCAATCTCAT GTCAATGCAT ATACACAATA TAATTTCCAT AAAGGGGATG ATGATGCACC 72339 .......... .......... .......... .......... .......... .......... 479 TCAATCAGTC AAATATCAAC ATAATACATA ACCAACTCAA TTATCACAAT TATACGGATG 72279 .......... .......... .......... .......... .......... .......... 479 TAATAAAGAA AACAAAATCA CACAAGGATT TCAAGTCAAT AATATATCAG CTAATGCCCT 72219 .......... .......... .......... .......... .......... .......... 479 TATGCTTTGG CATTCTCAAA TTACAATCCA CATTCTATAC TAGTGACTTT CCCTTTTATA 72159 .......... .......... .......... .......... .......... .......... 479 ATACTGGTAC TCGTACTAAT GTCCTCACAC AATTTATACG AGACCCCCAT CTTTTGTCCT 72099 || ||||| .......... .......... .......... .......... .......CAA CTTTT..... 487 TACCCTTTGT CTATTTCATT TTTAATCTTT AATTTGGAAA ACATCATTCA ACAAGTCCAA 72039 .......... .......... .......... .......... .......... .......... 487 AAGGTCTTAG CATACCTTAA ATGCCGAACC TCGTGCCACG AATCTTCAAG ATTTTTTCTT 71979 .......... .......... .......... .......... .......... .......... 487 TACTTTTCGC AAAGTTTTGA AACGTTCCCA ATCTATCAAT TATGCGATAT TCATATGTAA 71919 .......... .......... .......... .......... .......... .......... 487 GCAGCTTTGT AGACATTCAA ATTATTATAT GTCTATCATA GACCCTAAAA CCCACTCATA 71859 .......... .......... .......... .......... .......... .......... 487 TCTCTAACCA AGCTTTAAAT CTTGATATAA TTTATATGTC AAAATTATCA TATATGCTAA 71799 .......... .......... .......... .......... .......... .......... 487 ATTTCAAGTC CAAAATTGAA CTTTAAGCTC TCCAAATATC CTTAAATTTG ATATTAAATC 71739 .......... .......... .......... .......... .......... .......... 487 ATATAATATA TACCTAATAA TTAATTATCT ATCTCAATAT ATCAAAACTA TTGTCTTAAT 71679 .......... .......... .......... .......... .......... .......... 487 TTGATAAAAT AAATATAATA AGGATCAATT CCACCAATTA ACAGCACCAG ACAAAGCACA 71619 .......... .......... .......... .......... .......... .......... 487 TAAAATCGAC AACGTTACCC ATTTTTCAAA TCCATTTTGT ACAAAAAAAA TGCCTTCAAC 71559 .......... .......... .......... .......... .......... .......... 487 TTTCAAAAAA AGAATCTAAT AAATAACCAT TGGAACTACA CATTACATTC AGGCAGAATA 71499 .......... .......... .......... .......... .......... .......... 487 TAATTGTTGG CATTGACTAT CAATTTCCAA TGATTACCTA ATCATTGTTT AATGATTTAA 71439 .......... .......... .......... .......... .......... .......... 487 TTTAATAAAA TAACATTTTT CCTAGCCTAG TTCAGCAAAC ATTGCCACAT ACGTATTCCA 71379 .......... .......... .......... .......... .......... .......... 487 CTTTCCACTT CCCTTTCTTG CAATTAAGAC AAATCAACCA ACACCATTGG AAATTCACCA 71319 .......... .......... .......... .......... .......... .......... 487 CCATAATTTA GTAAATCCTA AAAAAAGTTT AATCACTCAT ATCAGGTCCT TATTCGATCC 71259 .......... .......... .......... .......... .......... .......... 487 AACCATTTTA TTATCCATCT ATTCTGACTA GCCTTCCCAC TAGAAAAGAA ATTGAATCAC 71199 .......... .......... .......... .......... .......... .......... 487 ATACTAAAAA TAAATATTAT TATACTACTA CAGCTGCATT GCATAATTTG CATATACAAA 71139 .......... .......... .......... .......... .......... .......... 487 TTGATGGAAT TTAAAGTACT TACCAGGATA ACCGACGAAA CCGTGTAGCC AACCACTATT 71079 .......... .......... .......... .......... .......... .......... 487 CTTAAAATCT TGAGTTATGA ATAAATTATT AAGGGAAATT TTCACATATA GAAAATAAAA 71019 |||||||| | | ||| |||| .......... .......... .......... .......... TTCACATACA GCAAACAAAA 507 AATTCATATT TGTATGCTAT AGCAAAGTTT ATAGCAAAGT TTGCATAATT GCGCTCCATA 70959 |||||||||| |||||||||| ||| | | | | | | |||||||| ||| |||||| AATTCATATT TGTATGCTAT AGC--A---- A-A-C----T TCGCATAATT GCGTTCCATA 555 GCAAACATAA AACTGTATAA TTCGCTATAC ATATACAATT GTATAATTCA CT 70907 |||||||||| || ||||||| |||||||||| |||||||||| ||||||||| || GCAAACATAA AATTGTATAA TTCGCTATAC ATATACAATT GTATAATTCG CT 607 hqPGS_C09HBa0047I13.1-_SGN-E371327- (71038 70907) ******************************************************************************** EST sequence 20 -strand 584 n (File: SGN-E378080-) 1 TCAATTTGGA TCAACTCAAT ACAATGTTTG CCTCTCATGG TTTAAATCAG GCTAATATGA 61 TTGCCTTATC TGCGGCCCAT ACTGTTGGAT TTTCTCACTG CGACCAATTC TCGAACCGAA 121 TTTTCAACTT TAACCCTAAA AACCCAGTGG ATCCAAGTCT CAACAAGACG TATGCAGCCC 181 AATTAGAACA AATGTGTCCG AAAAATGTGG ACCCAAGAAT AGCCATCAAC ATGGACCCAA 241 TAACACCTAG GGCTTTTGAC AATGTGTATT TCCAAAACTT GCAAAACGGA ATGGGCCTAT 301 TCACATCAGA TCAAGTTTTG TTCACAGACC AAAGGTCTAA AGGTACTGTT AATTTGTGGG 361 CCAGTAATTT TAAAGTTTTT GAAACCGCAT TTGTTAATGC GATGACTAAA TTGGGCCGAG 421 TTGGTGTGAA GACGGGTAAG AATGGAAATA TTCGTATAGA CTGTGGAGCA TTTAATTAAG 481 GGCAACTTTC ACGTATAGCA AATAAAAAAT TCATATTTGT ATGTTATAAC AAAGTTTGCA 541 TAATTGCGCT CCATAGCAAA AAAAAAAAAA AAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 77226 to 70114): Exon 1 76033 76019 ( 15 n); cDNA 429 443 ( 15 n); score: 0.600 Intron 1 76018 74123 (1896 n); Pd: 0.537 (s: 0), Pa: 0.984 (s: 0) Exon 2 74122 74092 ( 31 n); cDNA 444 472 ( 29 n); score: 0.613 Intron 2 74091 71054 (3038 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.90) Exon 3 71053 70989 ( 65 n); cDNA 473 537 ( 65 n); score: 0.892 PPA cDNA 558 584 MATCH C09HBa0047I13.1- SGN-E378080- 0.892 111 0.190 C PGS_C09HBa0047I13.1-_SGN-E378080- (76033 76019,74122 74092,71053 70989) Alignment (genomic DNA sequence = upper lines): AAAAAGGGGC CGAAGGTCCT CCATTTGAAT TAGTTAATTA TATTCTTGTA TAAATGTGAT 75974 || | ||| ||| AAGACGGGTA AGAAT..... .......... .......... .......... .......... 443 GTTCCACTTT ACTTGGGAGT GTTGTTGTTC GAGGATTTTT GGTCTCTTCT TTAATGTTTG 75914 .......... .......... .......... .......... .......... .......... 443 ATGTTGTTCT TTATAAGTTC TTGGAATTTA GAAAATTTCA TTACTTCTGA CCAACTATTT 75854 .......... .......... .......... .......... .......... .......... 443 CCATGGAGAT TTCTTAGACT TCTTTATTAT ACTTAAAATA TCTCTATGAC TCATAATTTT 75794 .......... .......... .......... .......... .......... .......... 443 AATATAAAAA AAATCAAAAA ACAAAATATA ACACTTTTAA GATTTTGCAT TGCTTAAGAT 75734 .......... .......... .......... .......... .......... .......... 443 ATAATGATTT TGACGATATA GTGTATATAT AAAAAATCTG AATATTACTA AATGATCAAT 75674 .......... .......... .......... .......... .......... .......... 443 ATGAGCTTAA TAACATACAG TTCAATCTCA TGAGAAGCAC GGGTAATTTA CCTAGTTCTG 75614 .......... .......... .......... .......... .......... .......... 443 ATATAAAATA TGTTCTTGAA TGACTTTTAT AATATGTATT CATTAATTGA TTCCCAAATT 75554 .......... .......... .......... .......... .......... .......... 443 TAGTTAATAT GGAATAGAGG GAGTATCCTT TATTTGTCAT TGTTATTATT ACTTGTACTA 75494 .......... .......... .......... .......... .......... .......... 443 CTTTCTCTAT TTCAATTTAT GTGACACACT TTTCATTAGT TAGTTCAAAA AGGAATGACA 75434 .......... .......... .......... .......... .......... .......... 443 TATTTTTCAT ATTTGACAAA TGTTTATTGA CCCTGTCAAT ATTATTTGGA AAATCTTCCA 75374 .......... .......... .......... .......... .......... .......... 443 TAAACGTGTA CTCTTCTATT TAAAAACATA TTTGGTTTAA GGGTAATTTT GTACCATTAA 75314 .......... .......... .......... .......... .......... .......... 443 AAAATCTTTT CATATTTTAT AAATCTCATG CAAAATACAT CTCATAAATT AAGCAAAAGT 75254 .......... .......... .......... .......... .......... .......... 443 AATTAATTTG CACGCGCAAT TATTAATAAA TTATCTTATA AATTTTATTA TTTAAAGATA 75194 .......... .......... .......... .......... .......... .......... 443 GCTTTCTATC AATAAATAAT GTCTAATCTA TGAATTCAGC AATACTACTT TTTACACGAT 75134 .......... .......... .......... .......... .......... .......... 443 AATTTGAAAT TTTGAATCTT ACATAAGAAT TTATACTCTA AATAAAAGAT ATAGAGTTTG 75074 .......... .......... .......... .......... .......... .......... 443 GTGCTGTTGC ACACACACTT GTATTTTAGT GAGTATTGCA AGGTGTGTAA GATTGAAAAA 75014 .......... .......... .......... .......... .......... .......... 443 AATTATACCA TTAAATGTGA AAATTGACGA TAAATTTTTA AATCAAAATC CATTTGGTTT 74954 .......... .......... .......... .......... .......... .......... 443 AGTGGTAAAA TTAGTTAGAA TATTTTTCCC TGTGTTGGTT TATTTAATTT CTCATGAAAT 74894 .......... .......... .......... .......... .......... .......... 443 ACTATAGTAG ATTTAACCAA AAAAATAAAA ATAGGATAAA CATGATAACA GTTAAATTTT 74834 .......... .......... .......... .......... .......... .......... 443 GAAACAAGAA TTGAATTAGC AATAGAATAT CAAATAATTT CAGGTAATTC ATAAGTAAAG 74774 .......... .......... .......... .......... .......... .......... 443 ATGCTCCTCC AAAAGAGAGT AATAAAAGGC TATAACTATT TTCTTTTTAA TTTAACACTA 74714 .......... .......... .......... .......... .......... .......... 443 AGATGGTGAC ATACTTACAT TGAAGTTTCA TTAAAAGAGT CTACAGTAAC ATTATTTTGA 74654 .......... .......... .......... .......... .......... .......... 443 TCAATCATTA TTTTGTATAT TCAATAGCAT TTAGCAACTC TTTATTCTGC AAAAAACAAA 74594 .......... .......... .......... .......... .......... .......... 443 CAAACATAAA AATGTGTTTA TCGTATATAT ACAGGATATC TATTATACAT ATTTTTAAAT 74534 .......... .......... .......... .......... .......... .......... 443 TTAAATATAT ATCATGAGAT GAAAACTAAC TTTTTCAATT TGTTGATCAA CCTCCTCAGA 74474 .......... .......... .......... .......... .......... .......... 443 TAACTTTTAT ACTTCAAAAG TTAAACAAGT AAATGTACTT CTCCTCTAAA TCAACATTGT 74414 .......... .......... .......... .......... .......... .......... 443 GTTGGAAGCA TGCTGAAATA TTCTAAGTGT TGGAAGTTAG GCTAAAAAAA TTCTAAGTGT 74354 .......... .......... .......... .......... .......... .......... 443 TGAAATAAGC TGAAATATGC CAAATGTTGG AACAGACTGA TATACTTTAA GTGTTAGAAT 74294 .......... .......... .......... .......... .......... .......... 443 GGTTAATTTT TGTTATTCTT TAGAATGTAT TTTGAATTTG AAAATATTCT ATATGTTAGA 74234 .......... .......... .......... .......... .......... .......... 443 ATATTTAGTG CTGAAACTTA GTTTGAATTA TGTGAGACAA GTTTTAGACA CGTGTCAGAT 74174 .......... .......... .......... .......... .......... .......... 443 GTAACCGCCT ATGTAACTTT TGTAACTGCC TTGTGCAAAA CTTTTATATA GGGTGGAAAT 74114 || | || .......... .......... .......... .......... .......... .GG-AAATAT 451 TCGTCTAAGG CAAAGGAGAA TGATTCTGGT CTTAGATTAA TTTGTGAAGC CTTATCCTTT 74054 |||| | || | |||| | | TCGTAT-AGA CTGTGGAGCA TT........ .......... .......... .......... 472 GTTGATTTGT TATTAGTAAA AGGTTGGGAA GAATTACCGT ATATTGGATA TGTTGTTACT 73994 .......... .......... .......... .......... .......... .......... 472 TTGATTGTTG CCTAAAAAAA CTAAATTAAG TCTTTCTATA CTTAGTCAAA TTTGTGTGAG 73934 .......... .......... .......... .......... .......... .......... 472 TGTAAGATTG AAGTTTGCAA GAGTTGTAGA CTATCTGGGA ATGGTGTTAG ATAAAAAAAA 73874 .......... .......... .......... .......... .......... .......... 472 TATCGACCCT CTTTCAGTTT GCATGGATTC ACAAATTAAG TTAATATGAA ATAAATGGAG 73814 .......... .......... .......... .......... .......... .......... 472 TACTCTTTAT TTATCATCAT AATTATTACT TGTACTTCTT CTCTATTCCA AATTTATGTG 73754 .......... .......... .......... .......... .......... .......... 472 ACACACTTTT CATTAATCAG TTTATAAAAG AATAACTAAT GTATCACCAT ATAACATGTG 73694 .......... .......... .......... .......... .......... .......... 472 TTTTACTTCA TTCAATCACA TAATAATGAA AATTGTATTA GTTTGATGTA TACACCTGGT 73634 .......... .......... .......... .......... .......... .......... 472 GCGGATAATA TTTTTCTTTC ATATTTTTGT GTTTTACTAA TGTTTAATGA CCCTATCAAT 73574 .......... .......... .......... .......... .......... .......... 472 ATTATTTGGA AAAATCATCC TAGGTATATA TTTAAGATTC TATATTACAT CATACAAATA 73514 .......... .......... .......... .......... .......... .......... 472 TACTAATAAG AAATTATTAA TATACCAACT TAATTACCTG TGATAACAAA TTTGAATTAA 73454 .......... .......... .......... .......... .......... .......... 472 TTTAAATTTA TATTTTATTA ATTATTTATT ATTTTCTTAT TTAATGTTGG ATAGAGAAAA 73394 .......... .......... .......... .......... .......... .......... 472 CAAACGCCGT GTTCTTTTTA TGGCAGTTAC CAAGATATTA TCTAACCATA ATTTAGAAAT 73334 .......... .......... .......... .......... .......... .......... 472 TTCACGACCC AAATTAACAA GTCGTGATGT TATCTATGAC CCCAACCAAT AGGTAAGCCA 73274 .......... .......... .......... .......... .......... .......... 472 ACCCAACACA TTTTACCAAC TTTAACTAAA TAGTGAGAAA AGAATAAACA CTAAGTGAAA 73214 .......... .......... .......... .......... .......... .......... 472 ATCTCCAACA TAAAGCTCTT TATAAGTACG AACTGCGGAA AGCTAAAAAT ACCACTCCAA 73154 .......... .......... .......... .......... .......... .......... 472 GAATTGTTGT CATAAGTACA AGAGCTTCTA AAACACGATG CAAGTCTGAA ACTAAAATGA 73094 .......... .......... .......... .......... .......... .......... 472 CACATCTAAC ATAGGGATAT CCTTTTTGAA TACTAAAAAA AACAGAATAA GTAAATGATA 73034 .......... .......... .......... .......... .......... .......... 472 GAGGGAGGTG TGGGCCACGG AACAGCCAAG AAGCTAACCA CAACTCCAAG ACACTCCAAG 72974 .......... .......... .......... .......... .......... .......... 472 CTCGGACTCA ATTTGTTCCA AGAGATTTGC TCGTACTCAT AATCGAATCT GCACAACAAA 72914 .......... .......... .......... .......... .......... .......... 472 GAGTGCAACA AGTGTAGTAT GAGTACGAAA CCACGTTTAC TCAATATATC TCATTGACCG 72854 .......... .......... .......... .......... .......... .......... 472 ACAATGAAGA TTTGTGAAGG GAGTTTTTAT AAGAAAAACA ATTCTTTAAT TGTACAAGTT 72794 .......... .......... .......... .......... .......... .......... 472 TATATTACAC TTACTAGTCA AGTTTCATCA AATAGAGGTA ATCAAATATC AAGTACTTTC 72734 .......... .......... .......... .......... .......... .......... 472 CAACCACCAC ATAAAACACA TAATCAGAAA AAAATGAATG ATGTGATGAA ATGCAATGCA 72674 .......... .......... .......... .......... .......... .......... 472 ATATAATGCC ATGAAATGGT ATGTCTCGGA ATTCTGAGCC CTCTCTTAAC CATATATACA 72614 .......... .......... .......... .......... .......... .......... 472 TGATACTCCT CATAATTACA TCGAGAGTTC ATGACCCATC GGGAACTTGC GAGGTCCATA 72554 .......... .......... .......... .......... .......... .......... 472 TATAGACACG AACGATCTTC ACGTGTCTGT GCGAACGATA TCAAGGCACT ATCATAAATC 72494 .......... .......... .......... .......... .......... .......... 472 AAATAATTTT CCATGGACGA TCTCCATGTG CCTTAAGTAG AATCTTTAAT TTCACCATCC 72434 .......... .......... .......... .......... .......... .......... 472 CTAGCACGGA CGATCTCCAC GTGCCCAACT TATACTCAAT CTCATGTCAA TGCATATACA 72374 .......... .......... .......... .......... .......... .......... 472 CAATATAATT TCCATAAAGG GGATGATGAT GCACCTCAAT CAGTCAAATA TCAACATAAT 72314 .......... .......... .......... .......... .......... .......... 472 ACATAACCAA CTCAATTATC ACAATTATAC GGATGTAATA AAGAAAACAA AATCACACAA 72254 .......... .......... .......... .......... .......... .......... 472 GGATTTCAAG TCAATAATAT ATCAGCTAAT GCCCTTATGC TTTGGCATTC TCAAATTACA 72194 .......... .......... .......... .......... .......... .......... 472 ATCCACATTC TATACTAGTG ACTTTCCCTT TTATAATACT GGTACTCGTA CTAATGTCCT 72134 .......... .......... .......... .......... .......... .......... 472 CACACAATTT ATACGAGACC CCCATCTTTT GTCCTTACCC TTTGTCTATT TCATTTTTAA 72074 .......... .......... .......... .......... .......... .......... 472 TCTTTAATTT GGAAAACATC ATTCAACAAG TCCAAAAGGT CTTAGCATAC CTTAAATGCC 72014 .......... .......... .......... .......... .......... .......... 472 GAACCTCGTG CCACGAATCT TCAAGATTTT TTCTTTACTT TTCGCAAAGT TTTGAAACGT 71954 .......... .......... .......... .......... .......... .......... 472 TCCCAATCTA TCAATTATGC GATATTCATA TGTAAGCAGC TTTGTAGACA TTCAAATTAT 71894 .......... .......... .......... .......... .......... .......... 472 TATATGTCTA TCATAGACCC TAAAACCCAC TCATATCTCT AACCAAGCTT TAAATCTTGA 71834 .......... .......... .......... .......... .......... .......... 472 TATAATTTAT ATGTCAAAAT TATCATATAT GCTAAATTTC AAGTCCAAAA TTGAACTTTA 71774 .......... .......... .......... .......... .......... .......... 472 AGCTCTCCAA ATATCCTTAA ATTTGATATT AAATCATATA ATATATACCT AATAATTAAT 71714 .......... .......... .......... .......... .......... .......... 472 TATCTATCTC AATATATCAA AACTATTGTC TTAATTTGAT AAAATAAATA TAATAAGGAT 71654 .......... .......... .......... .......... .......... .......... 472 CAATTCCACC AATTAACAGC ACCAGACAAA GCACATAAAA TCGACAACGT TACCCATTTT 71594 .......... .......... .......... .......... .......... .......... 472 TCAAATCCAT TTTGTACAAA AAAAATGCCT TCAACTTTCA AAAAAAGAAT CTAATAAATA 71534 .......... .......... .......... .......... .......... .......... 472 ACCATTGGAA CTACACATTA CATTCAGGCA GAATATAATT GTTGGCATTG ACTATCAATT 71474 .......... .......... .......... .......... .......... .......... 472 TCCAATGATT ACCTAATCAT TGTTTAATGA TTTAATTTAA TAAAATAACA TTTTTCCTAG 71414 .......... .......... .......... .......... .......... .......... 472 CCTAGTTCAG CAAACATTGC CACATACGTA TTCCACTTTC CACTTCCCTT TCTTGCAATT 71354 .......... .......... .......... .......... .......... .......... 472 AAGACAAATC AACCAACACC ATTGGAAATT CACCACCATA ATTTAGTAAA TCCTAAAAAA 71294 .......... .......... .......... .......... .......... .......... 472 AGTTTAATCA CTCATATCAG GTCCTTATTC GATCCAACCA TTTTATTATC CATCTATTCT 71234 .......... .......... .......... .......... .......... .......... 472 GACTAGCCTT CCCACTAGAA AAGAAATTGA ATCACATACT AAAAATAAAT ATTATTATAC 71174 .......... .......... .......... .......... .......... .......... 472 TACTACAGCT GCATTGCATA ATTTGCATAT ACAAATTGAT GGAATTTAAA GTACTTACCA 71114 .......... .......... .......... .......... .......... .......... 472 GGATAACCGA CGAAACCGTG TAGCCAACCA CTATTCTTAA AATCTTGAGT TATGAATAAA 71054 .......... .......... .......... .......... .......... .......... 472 TTATTAAGGG AAATTTTCAC ATATAGAAAA TAAAAAATTC ATATTTGTAT GCTATAGCAA 70994 | |||||||| || |||||| ||||| ||| |||||||||| |||||||||| | |||| ||| TAATTAAGGG CAACTTTCAC GTATAGCAAA TAAAAAATTC ATATTTGTAT GTTATAACAA 532 AGTTT 70989 ||||| AGTTT 537 hqPGS_C09HBa0047I13.1-_SGN-E378080- (71053 70989) ******************************************************************************** EST sequence 8 +strand 719 n (File: SGN-E390063+) 1 AGGAATTATA AACTCTAATT CCTTCTACTC AAAGACAAAA AACTACTCCC TAGTTTTCTA 61 TCTTCTCAAT GCTTTTCTAC TACCTAGATT GTAAACAAGA CTCTTGAATA CAATCTTTAC 121 AACTTTATCA CTCAACTCGC AGCACTCAAA AGATTTTAAC AAAACTCTCT CAACCCTCTT 181 GGTCGTGTTT TCAAGTTCTC TCTTTGTAAG TGCGCAAGTT TTTCTGATCA AAATAGCTCT 241 CTATTTATAG ACCAAAAATT CAGCCAATCC TTGTACAAAT CGACTTGTAT TTGTCTTCTA 301 CAAATCCTTG TTGACTTCTA CTAACTCTTT TACTCAAAAC CTTATTGTAC TCAAATTTGT 361 TTTTAGTAGT TTTCCTTAAC CAAGTAGACT ACTCCAAACA AAACGTACAT ATAAGTTACC 421 ATCTATAACT AAACACTACT GGTACGCCGC CTCTTTGCCG CCACTAACAC ACCTGCTGCA 481 TAGTTTCACT GGAACATGTT GCGTTACCTG TTCAATACTA TTTTACCATT TTCAAAATCT 541 CAAGATTAAC AAATTCCCCC TTTTTGACTA TGGCAAATAA TCAGCTTGCA TTTGAATAGG 601 TACACAATAC ATCAATCAAC ATATAGAACA CTTTCATATC ATCTGCACAT CTGCAATCTG 661 CAGGCTGCTT CCCCCTTTTG CCATTAGCCC AAAATTGAAA ACCAAAGTAC ATATGCATA Predicted gene structure (within gDNA segment 83980 to 85839): Exon 1 84600 84675 ( 76 n); cDNA 3 79 ( 77 n); score: 0.928 Intron 1 84676 84705 ( 30 n); Pd: 0.106 (s: 0.89), Pa: 0.000 (s: 0.70) ?? Exon 2 84706 84973 ( 268 n); cDNA 80 353 ( 274 n); score: 0.836 MATCH C09HBa0047I13.1+ SGN-E390063+ 0.856 344 0.478 C PGS_C09HBa0047I13.1+_SGN-E390063+ (84600 84675,84706 84973) Alignment (genomic DNA sequence = upper lines): GAATTATAAA CTCTAATTCC TTCTACTC-A ACACAAAAAA CTACTCCCTA GTTTTCTATC 84658 |||||||||| |||||||||| |||||||| | | |||||||| |||||||||| |||||||||| GAATTATAAA CTCTAATTCC TTCTACTCAA AGACAAAAAA CTACTCCCTA GTTTTCTATC 62 TTTTCAATGC TTTTCAAGTA CTATAACTTG TCAAGCAAAT CTACTAC--- CC-AGATTGT 84714 || ||||||| ||||| | || ||||||| TTCTCAATGC TTTTCTA... .......... .......... .......CTA CCTAGATTGT 92 AAACAAGACT CTTGAATACA ATCTT-ACAA CTTTTTCACT CAACTTGCAA CACTCAAAAG 84773 |||||||||| |||||||||| ||||| |||| |||| ||||| ||||| ||| |||||||||| AAACAAGACT CTTGAATACA ATCTTTACAA CTTTATCACT CAACTCGCAG CACTCAAAAG 152 TGTTTATCAA AACTCTCTCA AACCTCTTGA TTATGTTCTG AACTCCTCTC TTTGTAAGTG 84833 |||| ||| |||||||||| | ||||||| | |||| | || | ||||| |||||||||| ATTTTAACAA AACTCTCTCA ACCCTCTTGG TCGTGTTTTC AAGTTCTCTC TTTGTAAGTG 212 CGCAATTTTT TCTGATCCAA ATAGCTCCCT ATTTATAAAT CAGAAATTCA ATCAATCCTT 84893 ||||| |||| ||||||| || ||||||| || ||||||| | || ||||||| |||||||| CGCAAGTTTT TCTGATCAAA ATAGCTCTCT ATTTATAGAC CAAAAATTCA GCCAATCCTT 272 GTACAAATCA ACTTGTATTT GTCTTCTACA AATCCTTGTT GACTTCTACT TGGAC-TTTA 84952 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | |||| GTACAAATCG ACTTGTATTT GTCTTCTACA AATCCTTGTT GACTTCTACT AACTCTTTTA 332 ATCAAAACCT TATTGCACTC A 84973 ||||||||| ||||| |||| | CTCAAAACCT TATTGTACTC A 353 hqPGS_C09HBa0047I13.1+_SGN-E390063+ (84600 84675,84706 84973) ******************************************************************************** EST sequence 10 +strand 726 n (File: SGN-E550374+) 1 CTCAAGGAAT TATAAACTCT AATTCCTCCT ACTCAAAGAC AAAAAACTAC TCCCTAGTTT 61 TCTATCTTCT CAATGCTTTT CTACTCCCTA GATTGTAAAC AAGACTCTTG AATACAATCT 121 TTACAACTTT ATCACTCAAC TCGCAGCACT CAAAAGATTT TAACAAAACT CTCTCAACCC 181 TCTTGGTCGT GTTTTCAAGT TCTCTCTTTG TAAGTGCGCA AGTTTTTCTG ATCAAAATAG 241 CTCTCTATTT ATAGACCAAA AATTCAGCCA ATCCTTGTAC AAATCGACTT GTATTTGTCT 301 TCTACAAATC CTTGTTGACT TCTACTAACT CTTTTACTCA AAACCTTATT GTACTCAAAT 361 TTGTTTTTAG TAGTTTTCCT TAACCAAGTA GACTACTCCA AACAAAACGT ACATATAAGT 421 TACCATCTAT AACTAAACAC TACTGGTACG CCGCCTCTTT GCCGCCACTA ACACACCTGC 481 TGCATAGTTT CACTGGAACA TGTTGCGTTA CCTGTTCAAT ACTATTTTAC CATTTTCAAA 541 ATCTCAAGAT TAACAAATTC CCCCTTTTTG ACTATGGCAA ATAATCAGCT TGCATTTGAA 601 TAGGTACACA ATACATCAAT CAACATATAG AACACTTTCA TATCATCTGC ACATCTGCAA 661 TCTGCAGGCT GCTTCCCCCT TTTGCCATTA GCCAAAAATT GAAAACCAAA GTACATATGC 721 ATACTA Predicted gene structure (within gDNA segment 83940 to 85860): Exon 1 84600 84675 ( 76 n); cDNA 7 83 ( 77 n); score: 0.914 Intron 1 84676 84705 ( 30 n); Pd: 0.106 (s: 0.89), Pa: 0.000 (s: 0.70) ?? Exon 2 84706 84973 ( 268 n); cDNA 84 357 ( 274 n); score: 0.836 MATCH C09HBa0047I13.1+ SGN-E550374+ 0.853 344 0.474 C PGS_C09HBa0047I13.1+_SGN-E550374+ (84600 84675,84706 84973) Alignment (genomic DNA sequence = upper lines): GAATTATAAA CTCTAATTCC TTCTACTC-A ACACAAAAAA CTACTCCCTA GTTTTCTATC 84658 |||||||||| |||||||||| | |||||| | | |||||||| |||||||||| |||||||||| GAATTATAAA CTCTAATTCC TCCTACTCAA AGACAAAAAA CTACTCCCTA GTTTTCTATC 66 TTTTCAATGC TTTTCAAGTA CTATAACTTG TCAAGCAAAT CTACTAC--- CC-AGATTGT 84714 || ||||||| ||||| | || ||||||| TTCTCAATGC TTTTCTA... .......... .......... .......CTC CCTAGATTGT 96 AAACAAGACT CTTGAATACA ATCTT-ACAA CTTTTTCACT CAACTTGCAA CACTCAAAAG 84773 |||||||||| |||||||||| ||||| |||| |||| ||||| ||||| ||| |||||||||| AAACAAGACT CTTGAATACA ATCTTTACAA CTTTATCACT CAACTCGCAG CACTCAAAAG 156 TGTTTATCAA AACTCTCTCA AACCTCTTGA TTATGTTCTG AACTCCTCTC TTTGTAAGTG 84833 |||| ||| |||||||||| | ||||||| | |||| | || | ||||| |||||||||| ATTTTAACAA AACTCTCTCA ACCCTCTTGG TCGTGTTTTC AAGTTCTCTC TTTGTAAGTG 216 CGCAATTTTT TCTGATCCAA ATAGCTCCCT ATTTATAAAT CAGAAATTCA ATCAATCCTT 84893 ||||| |||| ||||||| || ||||||| || ||||||| | || ||||||| |||||||| CGCAAGTTTT TCTGATCAAA ATAGCTCTCT ATTTATAGAC CAAAAATTCA GCCAATCCTT 276 GTACAAATCA ACTTGTATTT GTCTTCTACA AATCCTTGTT GACTTCTACT TGGAC-TTTA 84952 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | |||| GTACAAATCG ACTTGTATTT GTCTTCTACA AATCCTTGTT GACTTCTACT AACTCTTTTA 336 ATCAAAACCT TATTGCACTC A 84973 ||||||||| ||||| |||| | CTCAAAACCT TATTGTACTC A 357 hqPGS_C09HBa0047I13.1+_SGN-E550374+ (84600 84675,84706 84973) ******************************************************************************** EST sequence 32 -strand 742 n (File: SGN-E389937-) 1 TAACACACCT GCTGCATAGT TTCACTGGAA CATGTGCGTT TACCTGTTCA ATACTATTTA 61 CCCATTTTCA AAATCTCAAG ATTAACAAAT TCCCCCTTTT TGACTATGGC AAATAATCAG 121 CTTGCATTTG AATAGGTACA CAATACATCA ATCAACATAT AGAACACTTT CATATCATCT 181 GCACATCTGC AATCTGCAGG CTGCTTCCCC CTTTTGCCAT TAGCCAAAAA TTGAAAACCA 241 AAGTACATAT GCATACTAAA ATAGAGAATC AGACAAAGCC ATTAGTGACA TCAAGAGTTA 301 GACATCAAAC CAAAATACAT ACAAAATAAG TAATGTCTAC TTCAGTCTTT AACTAGTCAA 361 AAACAAAAAA TTATAAGATA ATGCATATAT GAGGATTGAT TAAACAGAGG GTGCCATAGA 421 GGTGGAAGAG TTTGAAGATC CCTGTGTTAG CAACCCCATG ATACTTTGTA GATGCCCAGA 481 ATTCACTTCT CTTTCTTGAT GTAACGCAGC CTGAGTTTGA GTGAGTTCTT CCTTAATCCT 541 GCAATTCTCA GCAATCAATT CCTCACGTTC CAATTTATGA GCAATCTGAA CCTGTTCCAT 601 TTCTACTGAA TGAGCCCTTT TTAATGCTTC CATCTCCTTT TCTACAGCAG TAAGAGAAGC 661 CCTCAACCGT TGAGTTGTCA CATCAACCCT TTTAGGCGTA CCAGGCATGT TCATGTAGTC 721 CACCTTCCCC ATGACATCAG AA Predicted gene structure (within gDNA segment 83830 to 88527): Exon 1 84992 85704 ( 713 n); cDNA 4 742 ( 739 n); score: 0.790 MATCH C09HBa0047I13.1+ SGN-E389937- 0.790 713 0.961 C PGS_C09HBa0047I13.1+_SGN-E389937- (84992 85704) Alignment (genomic DNA sequence = upper lines): CATACACGCT GCAGTATTTC ATTGGAACAT GTTGCGTTAC CTGTTCAATA CAATTTTGCC 85051 || || ||| ||| |||| | |||||||| || |||| |||||||||| | |||| || CACACCTGCT GCATAGTTTC ACTGGAACAT GTGCGTTTAC CTGTTCAATA CTATTTACCC 63 ATTTTCAAAA TCTCAAGATT AACAAATTCC CCCTTTTTGA CTATGGTAAA TAATCAATTT 85111 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| |||||| || ATTTTCAAAA TCTCAAGATT AACAAATTCC CCCTTTTTGA CTATGGCAAA TAATCAGCTT 123 GCATTTGAAT ---T--TGAA TAGGT-ACAC AACATAT-CA ATA-TAT-AG AACA-CTTTA 85161 |||||||||| | || || | | | ||||||| | | | | | | | || || | GCATTTGAAT AGGTACACAA TACATCAATC AACATATAGA ACACTTTCAT ATCATCTGCA 183 TATC----AT CTGCAGGCTA CTTTCCCCTT TTGCCATTAG CCAAAAATTG AAAACCAAAG 85217 ||| || ||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| CATCTGCAAT CTGCAGGCTG CTTCCCCCTT TTGCCATTAG CCAAAAATTG AAAACCAAAG 243 TACATATGCA TACAAAAATA GAGCATCAGA CATAGTCATT AGTTACATCT AGAGTTAGAC 85277 |||||||||| ||| |||||| ||| |||||| || || |||| ||| ||||| |||||||||| TACATATGCA TACTAAAATA GAGAATCAGA CAAAGCCATT AGTGACATCA AGAGTTAGAC 303 ATAAAACC-- AAT--ATAC- --AT-ACT-A T-T-TACTTC AGTC-TTAAC TAGTCAAGAA 85325 || ||||| ||| |||| || | | | | | |||||| |||| ||||| ||||||| || ATCAAACCAA AATACATACA AAATAAGTAA TGTCTACTTC AGTCTTTAAC TAGTCAAAAA 363 C-AAAAATTA TAAGACAATG CATATAGAAA TGATAGATTA AGCAGAGGGT GCCACAGAGG 85384 | |||||||| ||||| |||| |||||| | ||| ||||| | |||||||| |||| ||||| CAAAAAATTA TAAGATAATG CATATA-TGA GGATTGATTA AACAGAGGGT GCCATAGAGG 422 TGGAAGAGGT TGAGGATCCC TTAGTTAGCA AACCCATGAA ACTTTGTAGA TGCCCAGAAT 85444 |||||||| | ||| |||||| | ||||||| | ||||||| |||||||||| |||||||||| TGGAAGAGTT TGAAGATCCC TGTGTTAGCA ACCCCATGAT ACTTTGTAGA TGCCCAGAAT 482 TCACTTCTCT TTCGTGATGT AACATAGCCT TAGTCTGAGT GAGTTCTTCT TTAATCCTAC 85504 |||||||||| ||| |||||| ||| ||||| ||| ||||| ||||||||| |||||||| | TCACTTCTCT TTCTTGATGT AACGCAGCCT GAGTTTGAGT GAGTTCTTCC TTAATCCTGC 542 AGTTCTCAGC AATCAATTCC TCTCGTTCCA ACTTATGAGC AAGCTGAATC TATTCCATCT 85564 | |||||||| |||||||||| || ||||||| | |||||||| || ||||| | | |||||| | AATTCTCAGC AATCAATTCC TCACGTTCCA ATTTATGAGC AATCTGAACC TGTTCCATTT 602 CTACTGAGTG AGCCATTTTT AATGCCTCCA TCTCCTCTTC TATAGCAGTG AGAGAAGCCC 85624 ||||||| || |||| ||||| ||||| |||| |||||| ||| || |||||| |||||||||| CTACTGAATG AGCCCTTTTT AATGCTTCCA TCTCCTTTTC TACAGCAGTA AGAGAAGCCC 662 TTAACCGTTG AGTTTTTACA TCAACCTTTT TAGGCGTACC AGGCATGTTC ATATAATCCA 85684 | |||||||| |||| | ||| |||||| ||| |||||||||| |||||||||| || || |||| TCAACCGTTG AGTTGTCACA TCAACCCTTT TAGGCGTACC AGGCATGTTC ATGTAGTCCA 722 CCTTCCCCAT GACATCAGAA 85704 |||||||||| |||||||||| CCTTCCCCAT GACATCAGAA 742 hqPGS_C09HBa0047I13.1+_SGN-E389937- (84992 85704) ******************************************************************************** EST sequence 34 -strand 714 n (File: SGN-E550463-) 1 GAACATGTTG CGTTACCTGT TCAATACTAT TTTACCATTT CAAAATCTCA AGATTAACAA 61 ATTCCCCCTT TTTGACTATG GCAAATAATC AGCTTGCATT TGAATAGGTA CACAATACAT 121 CAATCAACAT ATAGAACACT TTCATATCAT CTGCACATCT GCAATCTGCA GGCTGCTTCC 181 CCCTTTTGCC ATTAGCCAAA AATTGAAAAC CAAAGTACAT ATGCATACTA AAATAGAGAA 241 TCAGACAAAG CCATTAGTGA CATCAAGAGT TAGACATCAA ACCAAAATAC ATACAAAATA 301 AGTAATGTCT ACTTCAGTCT TTAACTAGTC AAAAACAAAA AATTATAAGA TAATGCATAT 361 ATGAGGATTG ATTAAACAGA GGGTGCCATA GAGGTGGAAG AGTTTGAAGA TCCCTGTGTT 421 AGCAACCCCA TGATACTTTG TAGATGCCCA GAATTCACTT CTCTTTCTTG ATGTAACGCA 481 GCCTGAGTTT GAGTGAGTTC TTCCTTAATC CTGCAATTCT CAGCAATCAA TTCCTCACGT 541 TCCAATTTAT GAGCAATCTG AACCTGTTCC ATTTCTACTG AATGAGCCCT TTTTAATGCT 601 TCCATCTCCT TTTCTACAGC AGTAAGAGAA GCCCTCAACC GTTGAGTTTT CACATCAACC 661 CTTTTAGGCG TACCAGGCAT GTTCATGTAG TCCACCTTCC CCATGACATC AGAA Predicted gene structure (within gDNA segment 84406 to 88527): Exon 1 85016 85704 ( 689 n); cDNA 1 714 ( 714 n); score: 0.800 MATCH C09HBa0047I13.1+ SGN-E550463- 0.800 689 0.965 C PGS_C09HBa0047I13.1+_SGN-E550463- (85016 85704) Alignment (genomic DNA sequence = upper lines): GAACATGTTG CGTTACCTGT TCAATACAAT TTTGCCATTT TCAAAATCTC AAGATTAACA 85075 |||||||||| |||||||||| ||||||| || ||| ||| || |||||||||| |||||||||| GAACATGTTG CGTTACCTGT TCAATACTAT TTTACCA-TT TCAAAATCTC AAGATTAACA 59 AATTCCCCCT TTTTGACTAT GGTAAATAAT CAATTTGCAT TTGAATTTGA ATA-GGTACA 85134 |||||||||| |||||||||| || ||||||| || |||||| |||||| | | | |||| AATTCCCCCT TTTTGACTAT GGCAAATAAT CAGCTTGCAT TTGAATAGGT ACACAATACA 119 -CAA-C---A TATC-AATA- TAT-AGAACA -CT--TTATA T-C-ATCTGC AGGCTACTTT 85181 ||| | | ||| || | | | | | || || || | | |||||| ||||| ||| TCAATCAACA TATAGAACAC TTTCATATCA TCTGCACATC TGCAATCTGC AGGCTGCTTC 179 CCCCTTTTGC CATTAGCCAA AAATTGAAAA CCAAAGTACA TATGCATACA AAAATAGAGC 85241 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ||||||||| CCCCTTTTGC CATTAGCCAA AAATTGAAAA CCAAAGTACA TATGCATACT AAAATAGAGA 239 ATCAGACATA GTCATTAGTT ACATCTAGAG TTAGACATAA AACC--AAT- -ATAC---AT 85294 |||||||| | | ||||||| ||||| |||| |||||||| | |||| ||| |||| || ATCAGACAAA GCCATTAGTG ACATCAAGAG TTAGACATCA AACCAAAATA CATACAAAAT 299 -ACT-AT-T- TACTTCAGTC -TTAACTAGT CAAGAAC-AA AAATTATAAG ACAATGCATA 85348 | | || | |||||||||| ||||||||| ||| ||| || |||||||||| | |||||||| AAGTAATGTC TACTTCAGTC TTTAACTAGT CAAAAACAAA AAATTATAAG ATAATGCATA 359 TAGAAATGAT AGATTAAGCA GAGGGTGCCA CAGAGGTGGA AGAGGTTGAG GATCCCTTAG 85408 || | ||| |||||| || |||||||||| ||||||||| |||| |||| ||||||| | TA-TGAGGAT TGATTAAACA GAGGGTGCCA TAGAGGTGGA AGAGTTTGAA GATCCCTGTG 418 TTAGCAAACC CATGAAACTT TGTAGATGCC CAGAATTCAC TTCTCTTTCG TGATGTAACA 85468 ||||||| || ||||| |||| |||||||||| |||||||||| ||||||||| ||||||||| TTAGCAACCC CATGATACTT TGTAGATGCC CAGAATTCAC TTCTCTTTCT TGATGTAACG 478 TAGCCTTAGT CTGAGTGAGT TCTTCTTTAA TCCTACAGTT CTCAGCAATC AATTCCTCTC 85528 ||||| ||| ||||||||| ||||| |||| |||| || || |||||||||| |||||||| | CAGCCTGAGT TTGAGTGAGT TCTTCCTTAA TCCTGCAATT CTCAGCAATC AATTCCTCAC 538 GTTCCAACTT ATGAGCAAGC TGAATCTATT CCATCTCTAC TGAGTGAGCC ATTTTTAATG 85588 ||||||| || |||||||| | |||| || || |||| ||||| ||| |||||| ||||||||| GTTCCAATTT ATGAGCAATC TGAACCTGTT CCATTTCTAC TGAATGAGCC CTTTTTAATG 598 CCTCCATCTC CTCTTCTATA GCAGTGAGAG AAGCCCTTAA CCGTTGAGTT TTTACATCAA 85648 | |||||||| || ||||| | ||||| |||| ||||||| || |||||||||| || ||||||| CTTCCATCTC CTTTTCTACA GCAGTAAGAG AAGCCCTCAA CCGTTGAGTT TTCACATCAA 658 CCTTTTTAGG CGTACCAGGC ATGTTCATAT AATCCACCTT CCCCATGACA TCAGAA 85704 || ||||||| |||||||||| |||||||| | | |||||||| |||||||||| |||||| CCCTTTTAGG CGTACCAGGC ATGTTCATGT AGTCCACCTT CCCCATGACA TCAGAA 714 hqPGS_C09HBa0047I13.1+_SGN-E550463- (85016 85704) ******************************************************************************** EST sequence 9 +strand 726 n (File: SGN-E550374+) 1 CTCAAGGAAT TATAAACTCT AATTCCTCCT ACTCAAAGAC AAAAAACTAC TCCCTAGTTT 61 TCTATCTTCT CAATGCTTTT CTACTCCCTA GATTGTAAAC AAGACTCTTG AATACAATCT 121 TTACAACTTT ATCACTCAAC TCGCAGCACT CAAAAGATTT TAACAAAACT CTCTCAACCC 181 TCTTGGTCGT GTTTTCAAGT TCTCTCTTTG TAAGTGCGCA AGTTTTTCTG ATCAAAATAG 241 CTCTCTATTT ATAGACCAAA AATTCAGCCA ATCCTTGTAC AAATCGACTT GTATTTGTCT 301 TCTACAAATC CTTGTTGACT TCTACTAACT CTTTTACTCA AAACCTTATT GTACTCAAAT 361 TTGTTTTTAG TAGTTTTCCT TAACCAAGTA GACTACTCCA AACAAAACGT ACATATAAGT 421 TACCATCTAT AACTAAACAC TACTGGTACG CCGCCTCTTT GCCGCCACTA ACACACCTGC 481 TGCATAGTTT CACTGGAACA TGTTGCGTTA CCTGTTCAAT ACTATTTTAC CATTTTCAAA 541 ATCTCAAGAT TAACAAATTC CCCCTTTTTG ACTATGGCAA ATAATCAGCT TGCATTTGAA 601 TAGGTACACA ATACATCAAT CAACATATAG AACACTTTCA TATCATCTGC ACATCTGCAA 661 TCTGCAGGCT GCTTCCCCCT TTTGCCATTA GCCAAAAATT GAAAACCAAA GTACATATGC 721 ATACTA Predicted gene structure (within gDNA segment 89983 to 95314): Exon 1 90613 90691 ( 79 n); cDNA 4 83 ( 80 n); score: 0.918 Intron 1 90692 90721 ( 30 n); Pd: 0.205 (s: 0.89), Pa: 0.000 (s: 0.70) ?? Exon 2 90722 91078 ( 357 n); cDNA 84 444 ( 361 n); score: 0.846 Intron 2 91079 92310 (1232 n); Pd: 0.000 (s: 0.76), Pa: 0.882 (s: 0) Exon 3 92311 92328 ( 18 n); cDNA 445 461 ( 17 n); score: 0.667 Intron 3 92329 92540 ( 212 n); Pd: 0.000 (s: 0), Pa: 0.996 (s: 0) Exon 4 92541 92568 ( 28 n); cDNA 462 486 ( 25 n); score: 0.571 Intron 4 92569 94433 (1865 n); Pd: 0.904 (s: 0), Pa: 0.982 (s: 0) Exon 5 94434 94445 ( 12 n); cDNA 487 497 ( 11 n); score: 0.667 MATCH C09HBa0047I13.1+ SGN-E550374+ 0.859 494 0.680 C PGS_C09HBa0047I13.1+_SGN-E550374+ (90613 90691,90722 91078,92311 92328,92541 92568,94434 94445) Alignment (genomic DNA sequence = upper lines): AAGGAATTAT AAACTCTAAT TCCTTCTACT C-AAGACAAA AAACTACTCC CTACTTTTCT 90671 |||||||||| |||||||||| |||| ||||| | |||||||| |||||||||| ||| |||||| AAGGAATTAT AAACTCTAAT TCCTCCTACT CAAAGACAAA AAACTACTCC CTAGTTTTCT 63 ATCTTTTCAA TGCTTTTCAA GTACTATAAC TTGTCAAGCA AATCTACTAC ---CC-AGAT 90727 ||||| |||| |||||||| | || |||| ATCTTCTCAA TGCTTTTCTA .......... .......... .......... CTCCCTAGAT 93 TGTAAACAAG ACTCTTGAAT ACAATC-TTA CAACTTTTTC ACTCAACTCG CAGCACTCAA 90786 |||||||||| |||||||||| |||||| ||| ||||||| || |||||||||| |||||||||| TGTAAACAAG ACTCTTGAAT ACAATCTTTA CAACTTTATC ACTCAACTCG CAGCACTCAA 153 AAGTGTTTAT CAAAACTCTC TTAAACCTCT TGATCGTGTT TTGAACTCCT CTCTTTGTAA 90846 ||| |||| |||||||||| | || ||||| || ||||||| || || | || |||||||||| AAGATTTTAA CAAAACTCTC TCAACCCTCT TGGTCGTGTT TTCAAGTTCT CTCTTTGTAA 213 GTGCGCAATT TTTTCTGATC CAAATAGCTC CCTATTTATA AATCAGAAAT TCAATCAATC 90906 |||||||| | |||||||||| ||||||||| ||||||||| | || |||| ||| ||||| GTGCGCAAGT TTTTCTGATC AAAATAGCTC TCTATTTATA GACCAAAAAT TCAGCCAATC 273 CTTGTACAAA TCAACTTGTA TTTGTCTTCT ACAAATCCTT GTTGACTTCT ACTTTGAC-T 90965 |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| ||| | | CTTGTACAAA TCGACTTGTA TTTGTCTTCT ACAAATCCTT GTTGACTTCT ACTAACTCTT 333 TTAATCAAAA CCTTATTGCA CTCAAATTTG TTTTCAGTAG TTTTCCTTAA CCAAGTAAAC 91025 ||| |||||| |||||||| | |||||||||| |||| ||||| |||||||||| ||||||| || TTACTCAAAA CCTTATTGTA CTCAAATTTG TTTTTAGTAG TTTTCCTTAA CCAAGTAGAC 393 TAATATAAAC AAAAACGTAC ATATAAGTTT CCATATACAA CTCGTACGCT GCCACTTGCA 91085 || | |||| ||||||||| ||||||||| |||| || || || || || | TACTCCAAAC -AAAACGTAC ATATAAGTTA CCATCTATAA CT-AAACACT ACT....... 444 TACACGTTGT AGTATTTCAT TTGAACATGT TGCGTTATCT GTTCAATACA ATTTTGCCAT 91145 .......... .......... .......... .......... .......... .......... 444 TTTCAAAATC TCAAGATTAA CATCAACTAT ATTAGATATA GATTTTAACT TTTACTCATA 91205 .......... .......... .......... .......... .......... .......... 444 ATATGATAAT GTATTCATGA ATAATAATTA ATTTTTCACA AATATATTGG TAAATAAAAA 91265 .......... .......... .......... .......... .......... .......... 444 TGGAGTAAGT AAAGTTTGGT TGACAACACA TTTCAATCAC CGGCTTATAT CGTCTTTGTT 91325 .......... .......... .......... .......... .......... .......... 444 CTTCATTGGG TATGAATTGT TGTATTTCGT TTTTATTTTA TTAATGAATT TCCTGTTATT 91385 .......... .......... .......... .......... .......... .......... 444 TTGTTTTTAT TTTAATCTGA GAAGATATTA TGTTATAAGA TACACTCCTT ACTAGCTATA 91445 .......... .......... .......... .......... .......... .......... 444 TAAAAATAGA TAATAAAATA TTGATTGATC ATAAAATGAT CTTAAATCAA ATAGAAGATT 91505 .......... .......... .......... .......... .......... .......... 444 CTATAAATAT TACTTTCAAT TTTATTCATC TATTACTTCT TTTATTGAAA AAGTTTAATA 91565 .......... .......... .......... .......... .......... .......... 444 TTTTATATCA CGATACAACT TTACTATGAT ACTAGATACT TTCATTAGAC AATGACTATT 91625 .......... .......... .......... .......... .......... .......... 444 TTATATATAT GCAACAAAAA AAGGAGAAAA GTACAATTCC GCAAAGATAA GAGAGAAACT 91685 .......... .......... .......... .......... .......... .......... 444 TAAACAAACG AATATTTTTC ACAAGAGGTG ATTGTTCGCA ATAAATTTTC ATAGTAGCTG 91745 .......... .......... .......... .......... .......... .......... 444 AAAATTAACT GCAAGCAAAA TAAATAAAAC AAAAATGTGA TTTTATTAAT GAATTGTGTG 91805 .......... .......... .......... .......... .......... .......... 444 AGTACAATTC TGTTGTTCTC TTTATTCTTC TCTACTAAGT TTCTCCGTGA TTCGAGGTCC 91865 .......... .......... .......... .......... .......... .......... 444 TTCAGTAGCG TATTTCTCGA CTGTAGGATG ATGAAGACCT CCCTGAGATG TATTTGATCT 91925 .......... .......... .......... .......... .......... .......... 444 CCAGAAATGT CGGAAAGCGC TTCGTCGTTG CTAGTTGATC TCCGAGAAGA AATCCGTTGA 91985 .......... .......... .......... .......... .......... .......... 444 TCAATCCTTT GAAGAGCTAT GTAGTCGATG TTGTAGCTAA TGTAGACCGC CTTGAGACAT 92045 .......... .......... .......... .......... .......... .......... 444 ATTTGATCTC CAAGAACGTC GAGAAGCGCT TCGTCGTTGC AAGTTCATCT CCGGAAAGGA 92105 .......... .......... .......... .......... .......... .......... 444 TTCTGTTGAT CACTCCTTCG AAGAGCTATG TCGTTGATGT TGTAGCTTTC TCCAATTTCA 92165 .......... .......... .......... .......... .......... .......... 444 AAATGCTTGT TGAAGTCTTC CCTCCCTTGA ATGTCATGTT CATCACCTAT TTATAGTTGT 92225 .......... .......... .......... .......... .......... .......... 444 AAGGGGTGGG CAAGGTTGCT TGTGATTGGC CAAAGGATGT CATTTTGACA CTTGACGCAT 92285 .......... .......... .......... .......... .......... .......... 444 TGTGATTCGT TCTTGCATTT GACAGGGAGT ACCACCTCAT TTGGACACGT GGCGTCACCT 92345 || || |||| | ||| .......... .......... .....GGTAC GCCGCCTC-T TTG....... .......... 461 TGTTGGTCTT TGATGTCTAG TCACTATGAC ATGTGACATG AGTTTGGACT TCAAGGTGAA 92405 .......... .......... .......... .......... .......... .......... 461 ATGTACCTTG GACTTGAATT TAATAAAATA GACTTATTTA TTTGTAAAGC CCATTTTCAT 92465 .......... .......... .......... .......... .......... .......... 461 CATTCAACCA AAATAAACAT GAATTAAATC CAAATTTTGT ATGAATTAAA TCCAATAAAA 92525 .......... .......... .......... .......... .......... .......... 461 TTTGTGTGTC TACAGATGCC CCTTACTCAA GCCCTGTTGA AGTGTACGTC TGCCAACACT 92585 ||| || || | | |||| || | .......... .....CCGCC ACTAACAC-A --CCTGCTGC ATA....... .......... 486 TGGTGACAAG ACTTGAAGTA TTCATGTATA TGTATTTTTT AGGCGTGTCA ACGTGTAGGC 92645 .......... .......... .......... .......... .......... .......... 486 TTGTCGAATT GACAATGAAA GTTGAAGTCT TTATGAAGGA ATTGTTGAGA CTTCAAGAGT 92705 .......... .......... .......... .......... .......... .......... 486 TTTTTTTTGT CATCTCATTC TAACTAGGTC ACTACAAATG ATTTGTTTAT TTATAATGAT 92765 .......... .......... .......... .......... .......... .......... 486 CCCAAAAAAA AATTGTTTAA ACATTCTTGC TTGAAAACCA CGTGGACCTT CTATATTGAT 92825 .......... .......... .......... .......... .......... .......... 486 TTCAAATAGA TAGGTCTAGT GAGTAGTAAC ATTGTGTGAT ATTCCTTGCA AGGTGTGAGA 92885 .......... .......... .......... .......... .......... .......... 486 AGAACAAGAA GATTGATTGT ATCTTGACTT AAATAAAAGG AATATTGACT TTCCTTTGGT 92945 .......... .......... .......... .......... .......... .......... 486 TCATTTTGTA AGAATCATTC TTCTTTTGAG TGCTAGCAAC TTCCATTTAG ATGGTAGAAA 93005 .......... .......... .......... .......... .......... .......... 486 TTGATATAAT TTGATTCTTC TAAGTTTACC AAAAATTTCC TTTTATAAGA AATAACAATT 93065 .......... .......... .......... .......... .......... .......... 486 ATTCAAAGAA AATTCTATAT AAGAATCTCC CATGTACAAA GGATTAATCA AAGAATCATT 93125 .......... .......... .......... .......... .......... .......... 486 AGAAAAATAA TTCTTCTAAC CAAATCAATG TGGAACTCCA AAGGTGTCTT CTTTTCTCAA 93185 .......... .......... .......... .......... .......... .......... 486 TCTCGTGCAG TCCCAACAAT ATTTTGTTTT CTTAGTGTAG AAATGTCCAA TGACAAGAGG 93245 .......... .......... .......... .......... .......... .......... 486 ATTGGTTTGG AAGAAATAAG ATTCATAGTA CTGCAGCCTA TCAAAAAATC AGCCTTAAAA 93305 .......... .......... .......... .......... .......... .......... 486 ACCTTCAAGA TTCTCGGGAA TCTGTTTTTG AAGTCGGATC CCAAATCTGT CAGTTCTTCT 93365 .......... .......... .......... .......... .......... .......... 486 CATAGCTATG CGCGATCTCG TTAAAAAATC AGTTTCTTGG TGTATGAACA TTCAAACGAT 93425 .......... .......... .......... .......... .......... .......... 486 CAGAGGCTTG TTTCTGAAAA AACTAGACTT TGAGTACTAC GATATATCCA AAATTTACAG 93485 .......... .......... .......... .......... .......... .......... 486 TTAGAAACCT TTTAGATCAA CGGGAATCAA TTATTGAAGT TGGACCCTGA ATCTGGACGT 93545 .......... .......... .......... .......... .......... .......... 486 TCTTCTCGAG CCTATGCGCG ATCTCACAAA CACATAAGTT TGTTGGTGTA GGAGCATTCA 93605 .......... .......... .......... .......... .......... .......... 486 AATGATGAGA GGCTTGTTTA TGGAGAAACA AGACTTCGAG TACTACGACA TAACCAAAAA 93665 .......... .......... .......... .......... .......... .......... 486 TAACAGTTAG AAACTTTTTG ATCAACGGGA ATCAATTTTT GAAGTTGGAC CCTAAATCTG 93725 .......... .......... .......... .......... .......... .......... 486 GACGTTCTAC TCACGGCTAT GCGCGATCTC TCCAAAACAC CATTTTCTTG GTGTATGAAC 93785 .......... .......... .......... .......... .......... .......... 486 ATTTAAAATA TGAGAGGCTT GATTCTGGAG AAACTAAACT TATATTATTA CGACATATCC 93845 .......... .......... .......... .......... .......... .......... 486 CAAAATCACA GTTAGAAACC TTTTAGATTG ACGGGAATCA ATTTCTGAAG TTGGACCCCA 93905 .......... .......... .......... .......... .......... .......... 486 AATCTGGAAG TTCTTCTCAC GGCTATGCTC AATCTCGCCA AAACATCACT TTCTTGGTGT 93965 .......... .......... .......... .......... .......... .......... 486 AGGAGCATTC AAAATGACGA TATACTAGAT TCTGATGAAA CTAGACTGTT GATTATACGA 94025 .......... .......... .......... .......... .......... .......... 486 CATATCCAAA AATCAACGTT AAGCTCCTTC CGAATCAACG GAAATCAAAT TTTAAAGTTG 94085 .......... .......... .......... .......... .......... .......... 486 GTCATCGAAT CTGGAAGTTC CCCTCATGGA TTTTCGTCTT TTGGATTTTT CTTGTTTCTC 94145 .......... .......... .......... .......... .......... .......... 486 TTTCTTGTAG GTAATAGTTG TGGTTTTGCA TATTTATTTT GCATAGACAT GTGTCTTAAT 94205 .......... .......... .......... .......... .......... .......... 486 TAGGGGATAT TGATTTTCAA GATCCAATTT GATCGTATTT CAAAACTTCG TGCTATTGGC 94265 .......... .......... .......... .......... .......... .......... 486 ACTGCTGTGT CAAACAAGAT TGTTGTGTTG CTGCTCATTT TTGGCATGCC ATATTGAAGG 94325 .......... .......... .......... .......... .......... .......... 486 GTCATGCACT TACTACATAT GTTATCAAAA GTATATCAAC CAAGAAAAAT TAAAAATTTC 94385 .......... .......... .......... .......... .......... .......... 486 GTGTAGTTTG CACCGATGTC TCCAATTTTT ATTCTTTTTT TGCTTCAGGT TTCCAAAAGA 94445 || || || || .......... .......... .......... .......... ........GT TT-CACTGGA 497 hqPGS_C09HBa0047I13.1+_SGN-E550374+ (90613 90691,90722 91078) ******************************************************************************** EST sequence 7 +strand 719 n (File: SGN-E390063+) 1 AGGAATTATA AACTCTAATT CCTTCTACTC AAAGACAAAA AACTACTCCC TAGTTTTCTA 61 TCTTCTCAAT GCTTTTCTAC TACCTAGATT GTAAACAAGA CTCTTGAATA CAATCTTTAC 121 AACTTTATCA CTCAACTCGC AGCACTCAAA AGATTTTAAC AAAACTCTCT CAACCCTCTT 181 GGTCGTGTTT TCAAGTTCTC TCTTTGTAAG TGCGCAAGTT TTTCTGATCA AAATAGCTCT 241 CTATTTATAG ACCAAAAATT CAGCCAATCC TTGTACAAAT CGACTTGTAT TTGTCTTCTA 301 CAAATCCTTG TTGACTTCTA CTAACTCTTT TACTCAAAAC CTTATTGTAC TCAAATTTGT 361 TTTTAGTAGT TTTCCTTAAC CAAGTAGACT ACTCCAAACA AAACGTACAT ATAAGTTACC 421 ATCTATAACT AAACACTACT GGTACGCCGC CTCTTTGCCG CCACTAACAC ACCTGCTGCA 481 TAGTTTCACT GGAACATGTT GCGTTACCTG TTCAATACTA TTTTACCATT TTCAAAATCT 541 CAAGATTAAC AAATTCCCCC TTTTTGACTA TGGCAAATAA TCAGCTTGCA TTTGAATAGG 601 TACACAATAC ATCAATCAAC ATATAGAACA CTTTCATATC ATCTGCACAT CTGCAATCTG 661 CAGGCTGCTT CCCCCTTTTG CCATTAGCCC AAAATTGAAA ACCAAAGTAC ATATGCATA Predicted gene structure (within gDNA segment 90014 to 95284): Exon 1 90614 90691 ( 78 n); cDNA 1 79 ( 79 n); score: 0.929 Intron 1 90692 90721 ( 30 n); Pd: 0.205 (s: 0.89), Pa: 0.000 (s: 0.70) ?? Exon 2 90722 91078 ( 357 n); cDNA 80 440 ( 361 n); score: 0.846 Intron 2 91079 92310 (1232 n); Pd: 0.000 (s: 0.76), Pa: 0.882 (s: 0) Exon 3 92311 92328 ( 18 n); cDNA 441 457 ( 17 n); score: 0.667 Intron 3 92329 92540 ( 212 n); Pd: 0.000 (s: 0), Pa: 0.996 (s: 0) Exon 4 92541 92568 ( 28 n); cDNA 458 482 ( 25 n); score: 0.571 Intron 4 92569 94433 (1865 n); Pd: 0.904 (s: 0), Pa: 0.982 (s: 0) Exon 5 94434 94445 ( 12 n); cDNA 483 493 ( 11 n); score: 0.667 MATCH C09HBa0047I13.1+ SGN-E390063+ 0.861 493 0.686 C PGS_C09HBa0047I13.1+_SGN-E390063+ (90614 90691,90722 91078,92311 92328,92541 92568,94434 94445) Alignment (genomic DNA sequence = upper lines): AGGAATTATA AACTCTAATT CCTTCTACTC -AAGACAAAA AACTACTCCC TACTTTTCTA 90672 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| || ||||||| AGGAATTATA AACTCTAATT CCTTCTACTC AAAGACAAAA AACTACTCCC TAGTTTTCTA 60 TCTTTTCAAT GCTTTTCAAG TACTATAACT TGTCAAGCAA ATCTACTAC- --CC-AGATT 90728 |||| ||||| ||||||| | || ||||| TCTTCTCAAT GCTTTTCTA. .......... .......... .........C TACCTAGATT 90 GTAAACAAGA CTCTTGAATA CAATC-TTAC AACTTTTTCA CTCAACTCGC AGCACTCAAA 90787 |||||||||| |||||||||| ||||| |||| |||||| ||| |||||||||| |||||||||| GTAAACAAGA CTCTTGAATA CAATCTTTAC AACTTTATCA CTCAACTCGC AGCACTCAAA 150 AGTGTTTATC AAAACTCTCT TAAACCTCTT GATCGTGTTT TGAACTCCTC TCTTTGTAAG 90847 || |||| | |||||||||| || |||||| | |||||||| | || | ||| |||||||||| AGATTTTAAC AAAACTCTCT CAACCCTCTT GGTCGTGTTT TCAAGTTCTC TCTTTGTAAG 210 TGCGCAATTT TTTCTGATCC AAATAGCTCC CTATTTATAA ATCAGAAATT CAATCAATCC 90907 ||||||| || ||||||||| ||||||||| ||||||||| | || ||||| || |||||| TGCGCAAGTT TTTCTGATCA AAATAGCTCT CTATTTATAG ACCAAAAATT CAGCCAATCC 270 TTGTACAAAT CAACTTGTAT TTGTCTTCTA CAAATCCTTG TTGACTTCTA CTTTGAC-TT 90966 |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| || | || TTGTACAAAT CGACTTGTAT TTGTCTTCTA CAAATCCTTG TTGACTTCTA CTAACTCTTT 330 TAATCAAAAC CTTATTGCAC TCAAATTTGT TTTCAGTAGT TTTCCTTAAC CAAGTAAACT 91026 || ||||||| ||||||| || |||||||||| ||| |||||| |||||||||| |||||| ||| TACTCAAAAC CTTATTGTAC TCAAATTTGT TTTTAGTAGT TTTCCTTAAC CAAGTAGACT 390 AATATAAACA AAAACGTACA TATAAGTTTC CATATACAAC TCGTACGCTG CCACTTGCAT 91086 | | |||| |||||||||| |||||||| | ||| || ||| | || || | ACTCCAAAC- AAAACGTACA TATAAGTTAC CATCTATAAC T-AAACACTA CT........ 440 ACACGTTGTA GTATTTCATT TGAACATGTT GCGTTATCTG TTCAATACAA TTTTGCCATT 91146 .......... .......... .......... .......... .......... .......... 440 TTCAAAATCT CAAGATTAAC ATCAACTATA TTAGATATAG ATTTTAACTT TTACTCATAA 91206 .......... .......... .......... .......... .......... .......... 440 TATGATAATG TATTCATGAA TAATAATTAA TTTTTCACAA ATATATTGGT AAATAAAAAT 91266 .......... .......... .......... .......... .......... .......... 440 GGAGTAAGTA AAGTTTGGTT GACAACACAT TTCAATCACC GGCTTATATC GTCTTTGTTC 91326 .......... .......... .......... .......... .......... .......... 440 TTCATTGGGT ATGAATTGTT GTATTTCGTT TTTATTTTAT TAATGAATTT CCTGTTATTT 91386 .......... .......... .......... .......... .......... .......... 440 TGTTTTTATT TTAATCTGAG AAGATATTAT GTTATAAGAT ACACTCCTTA CTAGCTATAT 91446 .......... .......... .......... .......... .......... .......... 440 AAAAATAGAT AATAAAATAT TGATTGATCA TAAAATGATC TTAAATCAAA TAGAAGATTC 91506 .......... .......... .......... .......... .......... .......... 440 TATAAATATT ACTTTCAATT TTATTCATCT ATTACTTCTT TTATTGAAAA AGTTTAATAT 91566 .......... .......... .......... .......... .......... .......... 440 TTTATATCAC GATACAACTT TACTATGATA CTAGATACTT TCATTAGACA ATGACTATTT 91626 .......... .......... .......... .......... .......... .......... 440 TATATATATG CAACAAAAAA AGGAGAAAAG TACAATTCCG CAAAGATAAG AGAGAAACTT 91686 .......... .......... .......... .......... .......... .......... 440 AAACAAACGA ATATTTTTCA CAAGAGGTGA TTGTTCGCAA TAAATTTTCA TAGTAGCTGA 91746 .......... .......... .......... .......... .......... .......... 440 AAATTAACTG CAAGCAAAAT AAATAAAACA AAAATGTGAT TTTATTAATG AATTGTGTGA 91806 .......... .......... .......... .......... .......... .......... 440 GTACAATTCT GTTGTTCTCT TTATTCTTCT CTACTAAGTT TCTCCGTGAT TCGAGGTCCT 91866 .......... .......... .......... .......... .......... .......... 440 TCAGTAGCGT ATTTCTCGAC TGTAGGATGA TGAAGACCTC CCTGAGATGT ATTTGATCTC 91926 .......... .......... .......... .......... .......... .......... 440 CAGAAATGTC GGAAAGCGCT TCGTCGTTGC TAGTTGATCT CCGAGAAGAA ATCCGTTGAT 91986 .......... .......... .......... .......... .......... .......... 440 CAATCCTTTG AAGAGCTATG TAGTCGATGT TGTAGCTAAT GTAGACCGCC TTGAGACATA 92046 .......... .......... .......... .......... .......... .......... 440 TTTGATCTCC AAGAACGTCG AGAAGCGCTT CGTCGTTGCA AGTTCATCTC CGGAAAGGAT 92106 .......... .......... .......... .......... .......... .......... 440 TCTGTTGATC ACTCCTTCGA AGAGCTATGT CGTTGATGTT GTAGCTTTCT CCAATTTCAA 92166 .......... .......... .......... .......... .......... .......... 440 AATGCTTGTT GAAGTCTTCC CTCCCTTGAA TGTCATGTTC ATCACCTATT TATAGTTGTA 92226 .......... .......... .......... .......... .......... .......... 440 AGGGGTGGGC AAGGTTGCTT GTGATTGGCC AAAGGATGTC ATTTTGACAC TTGACGCATT 92286 .......... .......... .......... .......... .......... .......... 440 GTGATTCGTT CTTGCATTTG ACAGGGAGTA CCACCTCATT TGGACACGTG GCGTCACCTT 92346 || || |||| || || .......... .......... ....GGTACG CCGCCTC-TT TG........ .......... 457 GTTGGTCTTT GATGTCTAGT CACTATGACA TGTGACATGA GTTTGGACTT CAAGGTGAAA 92406 .......... .......... .......... .......... .......... .......... 457 TGTACCTTGG ACTTGAATTT AATAAAATAG ACTTATTTAT TTGTAAAGCC CATTTTCATC 92466 .......... .......... .......... .......... .......... .......... 457 ATTCAACCAA AATAAACATG AATTAAATCC AAATTTTGTA TGAATTAAAT CCAATAAAAT 92526 .......... .......... .......... .......... .......... .......... 457 TTGTGTGTCT ACAGATGCCC CTTACTCAAG CCCTGTTGAA GTGTACGTCT GCCAACACTT 92586 ||| || || | | |||| || | .......... ....CCGCCA CTAACAC-A- -CCTGCTGCA TA........ .......... 482 GGTGACAAGA CTTGAAGTAT TCATGTATAT GTATTTTTTA GGCGTGTCAA CGTGTAGGCT 92646 .......... .......... .......... .......... .......... .......... 482 TGTCGAATTG ACAATGAAAG TTGAAGTCTT TATGAAGGAA TTGTTGAGAC TTCAAGAGTT 92706 .......... .......... .......... .......... .......... .......... 482 TTTTTTTGTC ATCTCATTCT AACTAGGTCA CTACAAATGA TTTGTTTATT TATAATGATC 92766 .......... .......... .......... .......... .......... .......... 482 CCAAAAAAAA ATTGTTTAAA CATTCTTGCT TGAAAACCAC GTGGACCTTC TATATTGATT 92826 .......... .......... .......... .......... .......... .......... 482 TCAAATAGAT AGGTCTAGTG AGTAGTAACA TTGTGTGATA TTCCTTGCAA GGTGTGAGAA 92886 .......... .......... .......... .......... .......... .......... 482 GAACAAGAAG ATTGATTGTA TCTTGACTTA AATAAAAGGA ATATTGACTT TCCTTTGGTT 92946 .......... .......... .......... .......... .......... .......... 482 CATTTTGTAA GAATCATTCT TCTTTTGAGT GCTAGCAACT TCCATTTAGA TGGTAGAAAT 93006 .......... .......... .......... .......... .......... .......... 482 TGATATAATT TGATTCTTCT AAGTTTACCA AAAATTTCCT TTTATAAGAA ATAACAATTA 93066 .......... .......... .......... .......... .......... .......... 482 TTCAAAGAAA ATTCTATATA AGAATCTCCC ATGTACAAAG GATTAATCAA AGAATCATTA 93126 .......... .......... .......... .......... .......... .......... 482 GAAAAATAAT TCTTCTAACC AAATCAATGT GGAACTCCAA AGGTGTCTTC TTTTCTCAAT 93186 .......... .......... .......... .......... .......... .......... 482 CTCGTGCAGT CCCAACAATA TTTTGTTTTC TTAGTGTAGA AATGTCCAAT GACAAGAGGA 93246 .......... .......... .......... .......... .......... .......... 482 TTGGTTTGGA AGAAATAAGA TTCATAGTAC TGCAGCCTAT CAAAAAATCA GCCTTAAAAA 93306 .......... .......... .......... .......... .......... .......... 482 CCTTCAAGAT TCTCGGGAAT CTGTTTTTGA AGTCGGATCC CAAATCTGTC AGTTCTTCTC 93366 .......... .......... .......... .......... .......... .......... 482 ATAGCTATGC GCGATCTCGT TAAAAAATCA GTTTCTTGGT GTATGAACAT TCAAACGATC 93426 .......... .......... .......... .......... .......... .......... 482 AGAGGCTTGT TTCTGAAAAA ACTAGACTTT GAGTACTACG ATATATCCAA AATTTACAGT 93486 .......... .......... .......... .......... .......... .......... 482 TAGAAACCTT TTAGATCAAC GGGAATCAAT TATTGAAGTT GGACCCTGAA TCTGGACGTT 93546 .......... .......... .......... .......... .......... .......... 482 CTTCTCGAGC CTATGCGCGA TCTCACAAAC ACATAAGTTT GTTGGTGTAG GAGCATTCAA 93606 .......... .......... .......... .......... .......... .......... 482 ATGATGAGAG GCTTGTTTAT GGAGAAACAA GACTTCGAGT ACTACGACAT AACCAAAAAT 93666 .......... .......... .......... .......... .......... .......... 482 AACAGTTAGA AACTTTTTGA TCAACGGGAA TCAATTTTTG AAGTTGGACC CTAAATCTGG 93726 .......... .......... .......... .......... .......... .......... 482 ACGTTCTACT CACGGCTATG CGCGATCTCT CCAAAACACC ATTTTCTTGG TGTATGAACA 93786 .......... .......... .......... .......... .......... .......... 482 TTTAAAATAT GAGAGGCTTG ATTCTGGAGA AACTAAACTT ATATTATTAC GACATATCCC 93846 .......... .......... .......... .......... .......... .......... 482 AAAATCACAG TTAGAAACCT TTTAGATTGA CGGGAATCAA TTTCTGAAGT TGGACCCCAA 93906 .......... .......... .......... .......... .......... .......... 482 ATCTGGAAGT TCTTCTCACG GCTATGCTCA ATCTCGCCAA AACATCACTT TCTTGGTGTA 93966 .......... .......... .......... .......... .......... .......... 482 GGAGCATTCA AAATGACGAT ATACTAGATT CTGATGAAAC TAGACTGTTG ATTATACGAC 94026 .......... .......... .......... .......... .......... .......... 482 ATATCCAAAA ATCAACGTTA AGCTCCTTCC GAATCAACGG AAATCAAATT TTAAAGTTGG 94086 .......... .......... .......... .......... .......... .......... 482 TCATCGAATC TGGAAGTTCC CCTCATGGAT TTTCGTCTTT TGGATTTTTC TTGTTTCTCT 94146 .......... .......... .......... .......... .......... .......... 482 TTCTTGTAGG TAATAGTTGT GGTTTTGCAT ATTTATTTTG CATAGACATG TGTCTTAATT 94206 .......... .......... .......... .......... .......... .......... 482 AGGGGATATT GATTTTCAAG ATCCAATTTG ATCGTATTTC AAAACTTCGT GCTATTGGCA 94266 .......... .......... .......... .......... .......... .......... 482 CTGCTGTGTC AAACAAGATT GTTGTGTTGC TGCTCATTTT TGGCATGCCA TATTGAAGGG 94326 .......... .......... .......... .......... .......... .......... 482 TCATGCACTT ACTACATATG TTATCAAAAG TATATCAACC AAGAAAAATT AAAAATTTCG 94386 .......... .......... .......... .......... .......... .......... 482 TGTAGTTTGC ACCGATGTCT CCAATTTTTA TTCTTTTTTT GCTTCAGGTT TCCAAAAGA 94445 ||| | || || .......... .......... .......... .......... .......GTT T-CACTGGA 493 hqPGS_C09HBa0047I13.1+_SGN-E390063+ (90614 90691,90722 91078) ******************************************************************************** EST sequence 48 -strand 805 n (File: SGN-E352005-) 1 TGAAAATTAA CTGCAAGCAA AATAAATACC AGAAATGATT TTATTAATGA ATCATTGTGA 61 GTACAATTCC TGGTTCTCCT GATTCTCTCT CNTAAGTTTC TCCGTGATTC GAGGGCCTTT 121 AGTAGCGTAT TTCTCGAATT GTTATAAGAT GTAGACCTCT TTGAGATTTT GTCGATCTCT 181 AGAACGTCGA AAAGCGCTTC GTCATTTTAA GTCGATCTCC GTGTAGAACT CCGTTGATCA 241 GCCCTTCGAA GAACTATTGA TGTTGATGTT GTAGCTTTCT CCAATTTGTT GAATGCTTGT 301 TGAAGAGTAT TCAGGATCCC CTTGAATGTC ATGTCTATCC CCTGTTTATA GTTGTAGGGA 361 GTGGACAAGG TTGCTTGCGA TCGGCCAGAT AATGTCATTT TGACACTTGA AACATTTCGA 421 TTCGTTCTTG TATTTGACAG GGACTACCAC CTCATTTGGA CACGTGGCGT CACCTTGTAG 481 GTCTTGAATT CTTAGTCAAT GTGACTCGTT GCATGGGTTT GGACTTCAAC GTGAAATGAA 541 CCTTGGATTT GAATTTAATA AGATGAAATT ATTTATTTGT AAAGCCCAAA TTACTTATTC 601 AGCCTAATGA ACATGGATTT AATTCAAATG ATATATGAAT TTGATCCAAT AAAATTTATG 661 TGTCAACAAG TGCCCATTAC TTTGAGGCTT GTCGACATAG AAGCTTGCCG ATGTTTGCAG 721 ACAAAACTTG AAGTAGCCAA GAATATTTTT TACGTTTTCT TGAGGACTTC TCTACGTGTA 781 GGTTTGCCAC ATTTTTACGA CAAAA Predicted gene structure (within gDNA segment 91134 to 96218): Exon 1 91744 92005 ( 262 n); cDNA 1 257 ( 257 n); score: 0.805 Intron 1 92006 92133 ( 128 n); Pd: 0.000 (s: 0.80), Pa: 0.000 (s: 0.73) Exon 2 92134 92551 ( 418 n); cDNA 258 680 ( 423 n); score: 0.801 Intron 2 92552 92621 ( 70 n); Pd: 0.000 (s: 0.82), Pa: 0.000 (s: 0) Exon 3 92622 92653 ( 32 n); cDNA 681 712 ( 32 n); score: 0.719 Intron 3 92654 94433 (1780 n); Pd: 0.000 (s: 0), Pa: 0.982 (s: 0) Exon 4 94434 94440 ( 7 n); cDNA 713 719 ( 7 n); score: 0.857 MATCH C09HBa0047I13.1+ SGN-E352005- 0.803 719 0.893 C PGS_C09HBa0047I13.1+_SGN-E352005- (91744 92005,92134 92551,92622 92653,94434 94440) Alignment (genomic DNA sequence = upper lines): TGAAAATTAA CTGCAAGCAA AATAAATAAA ACAAAAATGT GATTTTATTA ATGAAT-TGT 91802 |||||||||| |||||||||| ||||||| | || ||| | |||||||||| |||||| | TGAAAATTAA CTGCAAGCAA AATAAAT--A CCAGAAA--T GATTTTATTA ATGAATCATT 56 GTGAGTACAA TTCTGTTGTT CTCTTTATTC TTCTCTACTA AGTTTCTCCG TGATTCGAGG 91862 |||||||||| ||| | ||| ||| | |||| ||||| || |||||||||| |||||||||| GTGAGTACAA TTC-CTGGTT CTCCTGATTC -TCTCTCNTA AGTTTCTCCG TGATTCGAGG 114 TCCTTCAGTA GCGTATTTCT CG-ACTGTAG GATGATGAAG ACCTCCCTGA GATGTATTTG 91921 |||| |||| |||||||||| || | ||| | |||| || ||||| ||| ||| | | | GCCTTTAGTA GCGTATTTCT CGAATTGTTA TAAGATGTAG ACCTCTTTGA GATTTTGTCG 174 ATCTCCAGAA ATGTCGGAAA GCGCTTCGTC GTTGCTAGTT GATCTCCGAG AAGAAATCCG 91981 ||||| || | | |||| ||| |||||||||| || ||| |||||||| | |||| |||| ATCTCTAG-A ACGTCGAAAA GCGCTTCGTC ATTTTAAGTC GATCTCCGTG TAGAACTCCG 233 TTGATCAATC CTTTGAAGAG CTATGTAGTC GATGTTGTAG CTAATGTAGA CCGCCTTGAG 92041 ||||||| | ||| ||||| |||| TTGATCAGCC CTTCGAAGAA CTAT...... .......... .......... .......... 257 ACATATTTGA TCTCCAAGAA CGTCGAGAAG CGCTTCGTCG TTGCAAGTTC ATCTCCGGAA 92101 .......... .......... .......... .......... .......... .......... 257 AGGATTCTGT TGATCACTCC TTCGAAGAGC TATGTCGTTG ATGTTGTAGC TTTCTCCAAT 92161 || |||| |||||||||| |||||||||| .......... .......... .......... ..TGATGTTG ATGTTGTAGC TTTCTCCAAT 285 TT-CAAAATG CTTGTTG-A- AGTCTTC--C CT-CCCTTGA ATGTCATGTT CATCACCTAT 92215 || |||| ||||||| | ||| ||| | ||||||| ||||||||| ||| ||| | TTGTTGAATG CTTGTTGAAG AGTATTCAGG ATCCCCTTGA ATGTCATGTC TATCCCCTGT 345 TTATAGTTGT AAGGGGTGGG CAAGGTTGCT TGTGATTGGC CAAAGGATGT CATTTTGACA 92275 |||||||||| | || |||| |||||||||| || ||| ||| || | |||| |||||||||| TTATAGTTGT AGGGAGTGGA CAAGGTTGCT TGCGATCGGC CAGATAATGT CATTTTGACA 405 CTTGACGCAT TGTGATTCGT TCTTGCATTT GACAGGGAGT ACCACCTCAT TTGGACACGT 92335 ||||| ||| | ||||||| ||||| |||| |||||||| | |||||||||| |||||||||| CTTGAAACAT TTCGATTCGT TCTTGTATTT GACAGGGACT ACCACCTCAT TTGGACACGT 465 GGCGTCACCT TGTTGGTCTT TGATGTCTAG TCACTATGAC ATGTGACATG AGTTTGGACT 92395 |||||||||| ||| |||||| || ||| ||| | |||| || |||| ||||||||| GGCGTCACCT TGTAGGTCTT GAATTCTTAG TCAATGTGAC TCGTTGCATG GGTTTGGACT 525 TCAAGGTGAA ATGTACCTTG GACTTGAATT TAATAAAATA GACTTATTTA TTTGTAAAGC 92455 |||| ||||| ||| |||||| || ||||||| |||||| || | ||||||| |||||||||| TCAACGTGAA ATGAACCTTG GATTTGAATT TAATAAGATG AAATTATTTA TTTGTAAAGC 585 CCATTTTCAT CATTCAACCA AAATAAACAT GAATTAAATC CAAATTTTGT ATGAATTAAA 92515 ||| || | ||||| || ||| ||||| | ||| ||| ||||| | | ||||||| | CCAAATTACT TATTCAGCC- TAATGAACAT GGATTTAATT CAAATGATAT ATGAATTTGA 644 TCCAATAAAA TTTGTGTGTC TACAGATGCC CCTTACTCAA GCCCTGTTGA AGTGTACGTC 92575 |||||||||| ||| |||||| ||| |||| | |||| TCCAATAAAA TTTATGTGTC AACAAGTGCC CATTAC.... .......... .......... 680 TGCCAACACT TGGTGACAAG ACTTGAAGTA TTCATGTATA TGTATTTTTT AGGCGTGTCA 92635 ||| |||| |||| .......... .......... .......... .......... ......TTTG AGGCTTGTCG 694 ACGTGTAGGC TTGTCGAATT GACAATGAAA GTTGAAGTCT TTATGAAGGA ATTGTTGAGA 92695 || | | || ||| ||| ACATAGAAGC TTGCCGAT.. .......... .......... .......... .......... 712 CTTCAAGAGT TTTTTTTTGT CATCTCATTC TAACTAGGTC ACTACAAATG ATTTGTTTAT 92755 .......... .......... .......... .......... .......... .......... 712 TTATAATGAT CCCAAAAAAA AATTGTTTAA ACATTCTTGC TTGAAAACCA CGTGGACCTT 92815 .......... .......... .......... .......... .......... .......... 712 CTATATTGAT TTCAAATAGA TAGGTCTAGT GAGTAGTAAC ATTGTGTGAT ATTCCTTGCA 92875 .......... .......... .......... .......... .......... .......... 712 AGGTGTGAGA AGAACAAGAA GATTGATTGT ATCTTGACTT AAATAAAAGG AATATTGACT 92935 .......... .......... .......... .......... .......... .......... 712 TTCCTTTGGT TCATTTTGTA AGAATCATTC TTCTTTTGAG TGCTAGCAAC TTCCATTTAG 92995 .......... .......... .......... .......... .......... .......... 712 ATGGTAGAAA TTGATATAAT TTGATTCTTC TAAGTTTACC AAAAATTTCC TTTTATAAGA 93055 .......... .......... .......... .......... .......... .......... 712 AATAACAATT ATTCAAAGAA AATTCTATAT AAGAATCTCC CATGTACAAA GGATTAATCA 93115 .......... .......... .......... .......... .......... .......... 712 AAGAATCATT AGAAAAATAA TTCTTCTAAC CAAATCAATG TGGAACTCCA AAGGTGTCTT 93175 .......... .......... .......... .......... .......... .......... 712 CTTTTCTCAA TCTCGTGCAG TCCCAACAAT ATTTTGTTTT CTTAGTGTAG AAATGTCCAA 93235 .......... .......... .......... .......... .......... .......... 712 TGACAAGAGG ATTGGTTTGG AAGAAATAAG ATTCATAGTA CTGCAGCCTA TCAAAAAATC 93295 .......... .......... .......... .......... .......... .......... 712 AGCCTTAAAA ACCTTCAAGA TTCTCGGGAA TCTGTTTTTG AAGTCGGATC CCAAATCTGT 93355 .......... .......... .......... .......... .......... .......... 712 CAGTTCTTCT CATAGCTATG CGCGATCTCG TTAAAAAATC AGTTTCTTGG TGTATGAACA 93415 .......... .......... .......... .......... .......... .......... 712 TTCAAACGAT CAGAGGCTTG TTTCTGAAAA AACTAGACTT TGAGTACTAC GATATATCCA 93475 .......... .......... .......... .......... .......... .......... 712 AAATTTACAG TTAGAAACCT TTTAGATCAA CGGGAATCAA TTATTGAAGT TGGACCCTGA 93535 .......... .......... .......... .......... .......... .......... 712 ATCTGGACGT TCTTCTCGAG CCTATGCGCG ATCTCACAAA CACATAAGTT TGTTGGTGTA 93595 .......... .......... .......... .......... .......... .......... 712 GGAGCATTCA AATGATGAGA GGCTTGTTTA TGGAGAAACA AGACTTCGAG TACTACGACA 93655 .......... .......... .......... .......... .......... .......... 712 TAACCAAAAA TAACAGTTAG AAACTTTTTG ATCAACGGGA ATCAATTTTT GAAGTTGGAC 93715 .......... .......... .......... .......... .......... .......... 712 CCTAAATCTG GACGTTCTAC TCACGGCTAT GCGCGATCTC TCCAAAACAC CATTTTCTTG 93775 .......... .......... .......... .......... .......... .......... 712 GTGTATGAAC ATTTAAAATA TGAGAGGCTT GATTCTGGAG AAACTAAACT TATATTATTA 93835 .......... .......... .......... .......... .......... .......... 712 CGACATATCC CAAAATCACA GTTAGAAACC TTTTAGATTG ACGGGAATCA ATTTCTGAAG 93895 .......... .......... .......... .......... .......... .......... 712 TTGGACCCCA AATCTGGAAG TTCTTCTCAC GGCTATGCTC AATCTCGCCA AAACATCACT 93955 .......... .......... .......... .......... .......... .......... 712 TTCTTGGTGT AGGAGCATTC AAAATGACGA TATACTAGAT TCTGATGAAA CTAGACTGTT 94015 .......... .......... .......... .......... .......... .......... 712 GATTATACGA CATATCCAAA AATCAACGTT AAGCTCCTTC CGAATCAACG GAAATCAAAT 94075 .......... .......... .......... .......... .......... .......... 712 TTTAAAGTTG GTCATCGAAT CTGGAAGTTC CCCTCATGGA TTTTCGTCTT TTGGATTTTT 94135 .......... .......... .......... .......... .......... .......... 712 CTTGTTTCTC TTTCTTGTAG GTAATAGTTG TGGTTTTGCA TATTTATTTT GCATAGACAT 94195 .......... .......... .......... .......... .......... .......... 712 GTGTCTTAAT TAGGGGATAT TGATTTTCAA GATCCAATTT GATCGTATTT CAAAACTTCG 94255 .......... .......... .......... .......... .......... .......... 712 TGCTATTGGC ACTGCTGTGT CAAACAAGAT TGTTGTGTTG CTGCTCATTT TTGGCATGCC 94315 .......... .......... .......... .......... .......... .......... 712 ATATTGAAGG GTCATGCACT TACTACATAT GTTATCAAAA GTATATCAAC CAAGAAAAAT 94375 .......... .......... .......... .......... .......... .......... 712 TAAAAATTTC GTGTAGTTTG CACCGATGTC TCCAATTTTT ATTCTTTTTT TGCTTCAGGT 94435 || .......... .......... .......... .......... .......... ........GT 714 TTCCA 94440 || || TTGCA 719 hqPGS_C09HBa0047I13.1+_SGN-E352005- (91744 92005,92134 92551,92622 92653) Total number of EST alignments reported: 69 ________________________________________________________________________________ Predicted gene locations (15) in segment 1 to 100810: PGL 1 (+ strand): 2532 2870 AGS-1 (2532 2870) SCR (e 0.792) Exon 1 2532 2870 ( 339 n); score: 0.792 PGS (2532 2870) SGN-E213530- 3-phase translation of AGS-1 (+strand): . . . . . . 2532 TTTTTATTTATTATCATTTATAGCAATACTATGTTAAATCTACAATATGTATTAAAAGTA F L F I I I Y S N T M L N L Q Y V L K V F Y L L S F I A I L C - I Y N M Y - K - F I Y Y H L - Q Y Y V K S T I C I K S . . . . . . 2592 AATTAAGTATGCAATATATATGTATTGTAATTGTTTTAGAAGTACATTATGCTTGTTTGG N - V C N I Y V L - L F - K Y I M L V W I K Y A I Y M Y C N C F R S T L C L F G K L S M Q Y I C I V I V L E V H Y A C L . . . . . . 2652 TAAGAAGTTGATACATTGTATTATAAATATATATTAAAATGTGTGATAAATGTATTATCC - E V D T L Y Y K Y I L K C V I N V L S K K L I H C I I N I Y - N V - - M Y Y P V R S - Y I V L - I Y I K M C D K C I I . . . . . . 2712 ATCAACAGTACTTGTATTGTATGTGAATAATAAATTATTCTTTGTAACATGAATTAAAAG I N S T C I V C E - - I I L C N M N - K S T V L V L Y V N N K L F F V T - I K S H Q Q Y L Y C M - I I N Y S L - H E L K . . . . . . 2772 TGTATTATAAATATATTAAAATGATCAAGTAAAAAAAAATATTATTGCTACGAATGATAA C I I N I L K - S S K K K Y Y C Y E - - V L - I Y - N D Q V K K N I I A T N D K V Y Y K Y I K M I K - K K I L L L R M I . . . . 2832 ATATTTTTTTTTTATTGTATATTTATACAAGTTTCCCAT I F F F Y C I F I Q V S H Y F F F I V Y L Y K F P N I F F L L Y I Y T S F P Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 2870 ATGGGAAACTTGTATAAATATACAATAAAAAAAAAATATTTATCATTCGTAGCAATAATA M G N L Y K Y T I K K K Y L S F V A I I W E T C I N I Q - K K N I Y H S - Q - Y G K L V - I Y N K K K I F I I R S N N . . . . . . 2810 TTTTTTTTTACTTGATCATTTTAATATATTTATAATACACTTTTAATTCATGTTACAAAG F F F T - S F - Y I Y N T L L I H V T K F F L L D H F N I F I I H F - F M L Q R I F F Y L I I L I Y L - Y T F N S C Y K . . . . . . 2750 AATAATTTATTATTCACATACAATACAAGTACTGTTGATGGATAATACATTTATCACACA N N L L F T Y N T S T V D G - Y I Y H T I I Y Y S H T I Q V L L M D N T F I T H E - F I I H I Q Y K Y C - W I I H L S H . . . . . . 2690 TTTTAATATATATTTATAATACAATGTATCAACTTCTTACCAAACAAGCATAATGTACTT F - Y I F I I Q C I N F L P N K H N V L F N I Y L - Y N V S T S Y Q T S I M Y F I L I Y I Y N T M Y Q L L T K Q A - C T . . . . . . 2630 CTAAAACAATTACAATACATATATATTGCATACTTAATTTACTTTTAATACATATTGTAG L K Q L Q Y I Y I A Y L I Y F - Y I L - - N N Y N T Y I L H T - F T F N T Y C R S K T I T I H I Y C I L N L L L I H I V . . . . 2570 ATTTAACATAGTATTGCTATAAATGATAATAAATAAAAA I - H S I A I N D N K - K F N I V L L - M I I N K D L T - Y C Y K - - - I K Maximal non-overlapping open reading frames (>= 64 codons): none PGL 2 (- strand): 4651 3862 AGS-1 (4651 3862) SCR (e 0.842) Exon 1 4651 3862 ( 790 n); score: 0.842 PGS (4651 3862) SGN-E352898+ 3-phase translation of AGS-1 (-strand): . . . . . . 4651 TTTGTTGAACAAGTGGGTGTTCAGAATCAAGACTTAACCAGATGGCAAAAGAAGGTTCAA F V E Q V G V Q N Q D L T R W Q K K V Q L L N K W V F R I K T - P D G K R R F K C - T S G C S E S R L N Q M A K E G S . . . . . . 4591 GGCTCATTTAGTGGTTAAAGGATAAGCAACTGATTATGCTGAAATATTTTCTCCTGTTGT G S F S G - R I S N - L C - N I F S C C A H L V V K G - A T D Y A E I F S P V V R L I - W L K D K Q L I M L K Y F L L L . . . . . . 4531 GAAGTTAACCTCTATTCGAATTCTATTGATTATTGTTGCATCGGAGAATATGCATCTAGA E V N L Y S N S I D Y C C I G E Y A S R K L T S I R I L L I I V A S E N M H L E - S - P L F E F Y - L L L H R R I C I - . . . . . . 4471 GCAAATGGATGAAAAAACAGTGTTTTTACATGGAGATCTGGACAAAGAGATCTATATGCA A N G - K N S V F T W R S G Q R D L Y A Q M D E K T V F L H G D L D K E I Y M Q S K W M K K Q C F Y M E I W T K R S I C . . . . . . 4411 ACAGCCGAAAGGATTTGTGGTTCCAGGCAAGGAACACATGGTGTGCAAGCTCACCAGGAG T A E R I C G S R Q G T H G V Q A H Q E Q P K G F V V P G K E H M V C K L T R S N S R K D L W F Q A R N T W C A S S P G . . . . . . 4351 CTTGTATGGACTAAAGCAAGCACCAAGGCAGTGGTACAAGAAGTTTGACTCCTTCATGAC L V W T K A S T K A V V Q E V - L L H D L Y G L K Q A P R Q W Y K K F D S F M T A C M D - S K H Q G S G T R S L T P S - . . . . . . 4291 CAAGAGTGAATTCTGCAAAGCTGAAAAGGATCCTTGTTGTTACTTCAAGAAATACACTAA Q E - I L Q S - K G S L L L L Q E I H - K S E F C K A E K D P C C Y F K K Y T N P R V N S A K L K R I L V V T S R N T L . . . . . . 4231 TTCATATGTCTTTCTACTCTTGTATCTGGATGATATGTTGATTGAAGGATCTAGTATGAG F I C L S T L V S G - Y V D - R I - Y E S Y V F L L L Y L D D M L I E G S S M R I H M S F Y S C I W M I C - L K D L V - . . . . . . 4171 GGAGAACAACAATCTGGACAAGGTTGTCTGCAGCGTTTGAGATGAAAGATTTGGGTCCAG G E Q Q S G Q G C L Q R L R - K I W V Q E N N N L D K V V C S V - D E R F G S S G R T T I W T R L S A A F E M K D L G P . . . . . . 4111 CGAAGCAGATTTTGGGGATGAAGATTTCTCGGGATAGATCTGCTTGCACTTTAAATCTAT R S R F W G - R F L G I D L L A L - I Y E A D F G D E D F S G - I C L H F K S I A K Q I L G M K I S R D R S A C T L N L . . . . . . 4051 CTCAGGAGTTGTACATTGAGAAGGTGCTGAGCAGATTCAGGGTTAATGATGCTAAACCCA L R S C T L R R C - A D S G L M M L N P S G V V H - E G A E Q I Q G - - C - T Q S Q E L Y I E K V L S R F R V N D A K P . . . . . . 3991 GGACTACTCCATTGGCAAATCACTTTAAATTGTCAAAGGAGCAGTCACCCAAGACTGTCG G L L H W Q I T L N C Q R S S H P R L S D Y S I G K S L - I V K G A V T Q D C R R T T P L A N H F K L S K E Q S P K T V . . . . . . 3931 AGGAGCGTAATCATATGGCACTTGTTCCATATGCTTTAGCAATTTGTAGTTTGGTGAGTG R S V I I W H L F H M L - Q F V V W - V G A - S Y G T C S I C F S N L - F G E C E E R N H M A L V P Y A L A I C S L V S . 3871 TTATGGTCTG L W S Y G L V M V Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0047I13.1-_PGL-2_AGS-1_PPS_1 (4566 4132) (frame '2'; 432 bp, 144 residues) 1 ATDYAEIFSP VVKLTSIRIL LIIVASENMH LEQMDEKTVF LHGDLDKEIY MQQPKGFVVP 61 GKEHMVCKLT RSLYGLKQAP RQWYKKFDSF MTKSEFCKAE KDPCCYFKKY TNSYVFLLLY 121 LDDMLIEGSS MRENNNLDKV VCSV- 3-phase translation of AGS-1 (+strand): . . . . . . 3862 CAGACCATAACACTCACCAAACTACAAATTGCTAAAGCATATGGAACAAGTGCCATATGA Q T I T L T K L Q I A K A Y G T S A I - R P - H S P N Y K L L K H M E Q V P Y D D H N T H Q T T N C - S I W N K C H M . . . . . . 3922 TTACGCTCCTCGACAGTCTTGGGTGACTGCTCCTTTGACAATTTAAAGTGATTTGCCAAT L R S S T V L G D C S F D N L K - F A N Y A P R Q S W V T A P L T I - S D L P M I T L L D S L G - L L L - Q F K V I C Q . . . . . . 3982 GGAGTAGTCCTGGGTTTAGCATCATTAACCCTGAATCTGCTCAGCACCTTCTCAATGTAC G V V L G L A S L T L N L L S T F S M Y E - S W V - H H - P - I C S A P S Q C T W S S P G F S I I N P E S A Q H L L N V . . . . . . 4042 AACTCCTGAGATAGATTTAAAGTGCAAGCAGATCTATCCCGAGAAATCTTCATCCCCAAA N S - D R F K V Q A D L S R E I F I P K T P E I D L K C K Q I Y P E K S S S P K Q L L R - I - S A S R S I P R N L H P Q . . . . . . 4102 ATCTGCTTCGCTGGACCCAAATCTTTCATCTCAAACGCTGCAGACAACCTTGTCCAGATT I C F A G P K S F I S N A A D N L V Q I S A S L D P N L S S Q T L Q T T L S R L N L L R W T Q I F H L K R C R Q P C P D . . . . . . 4162 GTTGTTCTCCCTCATACTAGATCCTTCAATCAACATATCATCCAGATACAAGAGTAGAAA V V L P H T R S F N Q H I I Q I Q E - K L F S L I L D P S I N I S S R Y K S R K C C S P S Y - I L Q S T Y H P D T R V E . . . . . . 4222 GACATATGAATTAGTGTATTTCTTGAAGTAACAACAAGGATCCTTTTCAGCTTTGCAGAA D I - I S V F L E V T T R I L F S F A E T Y E L V Y F L K - Q Q G S F S A L Q N R H M N - C I S - S N N K D P F Q L C R . . . . . . 4282 TTCACTCTTGGTCATGAAGGAGTCAAACTTCTTGTACCACTGCCTTGGTGCTTGCTTTAG F T L G H E G V K L L V P L P W C L L - S L L V M K E S N F L Y H C L G A C F S I H S W S - R S Q T S C T T A L V L A L . . . . . . 4342 TCCATACAAGCTCCTGGTGAGCTTGCACACCATGTGTTCCTTGCCTGGAACCACAAATCC S I Q A P G E L A H H V F L A W N H K S P Y K L L V S L H T M C S L P G T T N P V H T S S W - A C T P C V P C L E P Q I . . . . . . 4402 TTTCGGCTGTTGCATATAGATCTCTTTGTCCAGATCTCCATGTAAAAACACTGTTTTTTC F R L L H I D L F V Q I S M - K H C F F F G C C I - I S L S R S P C K N T V F S L S A V A Y R S L C P D L H V K T L F F . . . . . . 4462 ATCCATTTGCTCTAGATGCATATTCTCCGATGCAACAATAATCAATAGAATTCGAATAGA I H L L - M H I L R C N N N Q - N S N R S I C S R C I F S D A T I I N R I R I E H P F A L D A Y S P M Q Q - S I E F E - . . . . . . 4522 GGTTAACTTCACAACAGGAGAAAATATTTCAGCATAATCAGTTGCTTATCCTTTAACCAC G - L H N R R K Y F S I I S C L S F N H V N F T T G E N I S A - S V A Y P L T T R L T S Q Q E K I F Q H N Q L L I L - P . . . . . . 4582 TAAATGAGCCTTGAACCTTCTTTTGCCATCTGGTTAAGTCTTGATTCTGAACACCCACTT - M S L E P S F A I W L S L D S E H P L K - A L N L L L P S G - V L I L N T H L L N E P - T F F C H L V K S - F - T P T . 4642 GTTCAACAAA V Q Q F N K C S T Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0047I13.1+_PGL-2_AGS-1_PPS_1 (4016 4252) (frame '2'; 234 bp, 78 residues) 1 ICSAPSQCTT PEIDLKCKQI YPEKSSSPKS ASLDPNLSSQ TLQTTLSRLL FSLILDPSIN 61 ISSRYKSRKT YELVYFLK- PGL 3 (+ strand): 5274 5640 AGS-1 (5274 5640) SCR (e 0.916) Exon 1 5274 5640 ( 367 n); score: 0.916 PGS (5274 5640) SGN-E306651+ 3-phase translation of AGS-1 (+strand): . . . . . . 5274 GTTGATCAAGTATGCAACTGTGCTCACAACATTCGCCCAAAATGTTTTGGGCATCCCACA V D Q V C N C A H N I R P K C F G H P T L I K Y A T V L T T F A Q N V L G I P Q - S S M Q L C S Q H S P K M F W A S H . . . . . . 5334 GTTTATCCTCATACTCCTTGCATGCTCATTCAATATTTTGTTCATCCTCTCATCAATTCC V Y P H T P C M L I Q Y F V H P L I N S F I L I L L A C S F N I L F I L S S I P S L S S Y S L H A H S I F C S S S H Q F . . . . . . 5394 ATTCTGCCTTGCCTTACCAGGAACTGCTCTCATCAATCTGATTCCCTTAGCTGCACAAAA I L P C L T R N C S H Q S D S L S C T K F C L A L P G T A L I N L I P L A A Q N H S A L P Y Q E L L S S I - F P - L H K . . . . . . 5454 TGCCGTGAACTATGATTTGTCATACTCTCCTCCATTGTCAGACCTTAGGCGTTTGACTTT C R E L - F V I L S S I V R P - A F D F A V N Y D L S Y S P P L S D L R R L T F M P - T M I C H T L L H C Q T L G V - L . . . . . . 5514 CAAGCTGCTCTGATTCTCAACTTCAGCTTTCCACTTCTTGAAAGTTGCAAACACATCTGA Q A A L I L N F S F P L L E S C K H I - K L L - F S T S A F H F L K V A N T S E S S C S D S Q L Q L S T S - K L Q T H L . . . . . . 5574 ATTATGCTTCAAGAAGTAAACCCATACCTTCCTGCTGAAATCATAAATGAAGGTAACATA I M L Q E V N P Y L P A E I I N E G N I L C F K K - T H T F L L K S - M K V T - N Y A S R S K P I P S C - N H K - R - H . 5634 GAATCTG E S N L R I Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0047I13.1+_PGL-3_AGS-1_PPS_1 (5275 5526) (frame '2'; 249 bp, 83 residues) 1 LIKYATVLTT FAQNVLGIPQ FILILLACSF NILFILSSIP FCLALPGTAL INLIPLAAQN 61 AVNYDLSYSP PLSDLRRLTF KLL- 3-phase translation of AGS-1 (-strand): . . . . . . 5640 CAGATTCTATGTTACCTTCATTTATGATTTCAGCAGGAAGGTATGGGTTTACTTCTTGAA Q I L C Y L H L - F Q Q E G M G L L L E R F Y V T F I Y D F S R K V W V Y F L K D S M L P S F M I S A G R Y G F T S - . . . . . . 5580 GCATAATTCAGATGTGTTTGCAACTTTCAAGAAGTGGAAAGCTGAAGTTGAGAATCAGAG A - F R C V C N F Q E V E S - S - E S E H N S D V F A T F K K W K A E V E N Q S S I I Q M C L Q L S R S G K L K L R I R . . . . . . 5520 CAGCTTGAAAGTCAAACGCCTAAGGTCTGACAATGGAGGAGAGTATGACAAATCATAGTT Q L E S Q T P K V - Q W R R V - Q I I V S L K V K R L R S D N G G E Y D K S - F A A - K S N A - G L T M E E S M T N H S . . . . . . 5460 CACGGCATTTTGTGCAGCTAAGGGAATCAGATTGATGAGAGCAGTTCCTGGTAAGGCAAG H G I L C S - G N Q I D E S S S W - G K T A F C A A K G I R L M R A V P G K A R S R H F V Q L R E S D - - E Q F L V R Q . . . . . . 5400 GCAGAATGGAATTGATGAGAGGATGAACAAAATATTGAATGAGCATGCAAGGAGTATGAG A E W N - - E D E Q N I E - A C K E Y E Q N G I D E R M N K I L N E H A R S M R G R M E L M R G - T K Y - M S M Q G V - . . . . . . 5340 GATAAACTGTGGGATGCCCAAAACATTTTGGGCGAATGTTGTGAGCACAGTTGCATACTT D K L W D A Q N I L G E C C E H S C I L I N C G M P K T F W A N V V S T V A Y L G - T V G C P K H F G R M L - A Q L H T . 5280 GATCAAC D Q I N - S Maximal non-overlapping open reading frames (>= 64 codons): none PGL 4 (- strand): 7193 6663 AGS-1 (7193 6663) SCR (e 0.922) Exon 1 7193 6663 ( 531 n); score: 0.922 PGS (7193 6663) SGN-E548332+ PGS (7193 6664) SGN-E540107- PGS (7193 6664) SGN-E540110+ PGS (7193 6669) SGN-E540114- PGS (7193 6717) SGN-E286267+ PGS (6962 6752) SGN-E257955- 3-phase translation of AGS-1 (-strand): . . . . . . 7193 TCTTGTGTTCTTAATTCATCAAATGTGTGTGTGTGCATTCGATCCAAACAACTGGTATCA S C V L N S S N V C V C I R S K Q L V S L V F L I H Q M C V C A F D P N N W Y Q L C S - F I K C V C V H S I Q T T G I . . . . . . 7133 GAGCTAAGGAGATTCAACAAGATCACTGAAGATGGATAGTTCGAAGCTTGAAATCGAGAA E L R R F N K I T E D G - F E A - N R E S - G D S T R S L K M D S S K L E I E K R A K E I Q Q D H - R W I V R S L K S R . . . . . . 7073 GTTTGATGGATCCGATTTCAGAATCTGGAAGATGCAGATCGAAGATTATCTGTACCAGAA V - W I R F Q N L E D A D R R L S V P E F D G S D F R I W K M Q I E D Y L Y Q K S L M D P I S E S G R C R S K I I C T R . . . . . . 7013 AGATCTTCACGAATCGTTGACCGGGGTGAAACCAAAATCCATGACGGAGGAGAAGTGGAA R S S R I V D R G E T K I H D G G E V E D L H E S L T G V K P K S M T E E K W K K I F T N R - P G - N Q N P - R R R S G . . . . . . 6953 ACTCAAGGATCGCTAGGCTCTAGGGTTGATTCGGTTGACTTTGTCAAGAAACGTGGCGTT T Q G S L G S R V D S V D F V K K R G V L K D R - A L G L I R L T L S R N V A L N S R I A R L - G - F G - L C Q E T W R . . . . . . 6893 ACACATCGTGAAGGAGAAGACTACGTCCGGTCTGTTGAAGGCACTGTCAAACATGTATGA T H R E G E D Y V R S V E G T V K H V - H I V K E K T T S G L L K A L S N M Y E Y T S - R R R L R P V C - R H C Q T C M . . . . . . 6833 AAAACTATCGGCAATGAACAAGGTATATTTGATGCGTAGATGTTCAATTTACAAATGTCT K T I G N E Q G I F D A - M F N L Q M S K L S A M N K V Y L M R R C S I Y K C L K N Y R Q - T R Y I - C V D V Q F T N V . . . . . . 6773 GAGAATGGATCCGTTTCTGATCATATAAACGAGTTCAATATTATTGTGAGTCAACTCAAT E N G S V S D H I N E F N I I V S Q L N R M D P F L I I - T S S I L L - V N S I - E W I R F - S Y K R V Q Y Y C E S T Q . . . . . . 6713 TCTGTGGATATTAATTTCGAAGATGAAATTAAGGCGTTGATTTTGATGTCA S V D I N F E D E I K A L I L M S L W I L I S K M K L R R - F - C F C G Y - F R R - N - G V D F D V Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0047I13.1-_PGL-4_AGS-1_PPS_1 (7067 6834) (frame '1'; 231 bp, 77 residues) 1 WIRFQNLEDA DRRLSVPERS SRIVDRGETK IHDGGEVETQ GSLGSRVDSV DFVKKRGVTH 61 REGEDYVRSV EGTVKHV- 3-phase translation of AGS-1 (+strand): . . . . . . 6663 TGACATCAAAATCAACGCCTTAATTTCATCTTCGAAATTAATATCCACAGAATTGAGTTG - H Q N Q R L N F I F E I N I H R I E L D I K I N A L I S S S K L I S T E L S - T S K S T P - F H L R N - Y P Q N - V . . . . . . 6723 ACTCACAATAATATTGAACTCGTTTATATGATCAGAAACGGATCCATTCTCAGACATTTG T H N N I E L V Y M I R N G S I L R H L L T I I L N S F I - S E T D P F S D I C D S Q - Y - T R L Y D Q K R I H S Q T F . . . . . . 6783 TAAATTGAACATCTACGCATCAAATATACCTTGTTCATTGCCGATAGTTTTTCATACATG - I E H L R I K Y T L F I A D S F S Y M K L N I Y A S N I P C S L P I V F H T C V N - T S T H Q I Y L V H C R - F F I H . . . . . . 6843 TTTGACAGTGCCTTCAACAGACCGGACGTAGTCTTCTCCTTCACGATGTGTAACGCCACG F D S A F N R P D V V F S F T M C N A T L T V P S T D R T - S S P S R C V T P R V - Q C L Q Q T G R S L L L H D V - R H . . . . . . 6903 TTTCTTGACAAAGTCAACCGAATCAACCCTAGAGCCTAGCGATCCTTGAGTTTCCACTTC F L D K V N R I N P R A - R S L S F H F F L T K S T E S T L E P S D P - V S T S V S - Q S Q P N Q P - S L A I L E F P L . . . . . . 6963 TCCTCCGTCATGGATTTTGGTTTCACCCCGGTCAACGATTCGTGAAGATCTTTCTGGTAC S S V M D F G F T P V N D S - R S F W Y P P S W I L V S P R S T I R E D L S G T L L R H G F W F H P G Q R F V K I F L V . . . . . . 7023 AGATAATCTTCGATCTGCATCTTCCAGATTCTGAAATCGGATCCATCAAACTTCTCGATT R - S S I C I F Q I L K S D P S N F S I D N L R S A S S R F - N R I H Q T S R F Q I I F D L H L P D S E I G S I K L L D . . . . . . 7083 TCAAGCTTCGAACTATCCATCTTCAGTGATCTTGTTGAATCTCCTTAGCTCTGATACCAG S S F E L S I F S D L V E S P - L - Y Q Q A S N Y P S S V I L L N L L S S D T S F K L R T I H L Q - S C - I S L A L I P . . . . . . 7143 TTGTTTGGATCGAATGCACACACACACATTTGATGAATTAAGAACACAAGA L F G S N A H T H I - - I K N T R C L D R M H T H T F D E L R T Q V V W I E C T H T H L M N - E H K Maximal non-overlapping open reading frames (>= 64 codons): none PGL 5 (+ strand): 14835 15148 AGS-1 (14835 15148) SCR (e 0.947) Exon 1 14835 15148 ( 314 n); score: 0.947 PGS (14835 15148) SGN-E331220+ 3-phase translation of AGS-1 (+strand): . . . . . . 14835 TTTTTACAGGTCAATGGAATCTTTATGCTCAAAACCCCGATTCAAGTAGTCATTTATTTG F L Q V N G I F M L K T P I Q V V I Y L F Y R S M E S L C S K P R F K - S F I W F T G Q W N L Y A Q N P D S S S H L F . . . . . . 14895 GTACCGCCGAAGGGGCGGGAACGACCATTCTAACTCTTCTCGGGGGATTCCACCCACAAA V P P K G R E R P F - L F S G D S T H K Y R R R G G N D H S N S S R G I P P T N G T A E G A G T T I L T L L G G F H P Q . . . . . . 14955 CACAAAGTTTACGGCTGACTGATATTGCCCATTATCATTTAGCTATTGTATTTATTTTTC H K V Y G - L I L P I I I - L L Y L F F T K F T A D - Y C P L S F S Y C I Y F S T Q S L R L T D I A H Y H L A I V F I F . . . . . . 15015 TTGTTGCTGGTCATATGTATAGAACCAATTTCTGGATTGGGCACAATATGAAAGATATTT L L L V I C I E P I S G L G T I - K I F C C W S Y V - N Q F L D W A Q Y E R Y F L V A G H M Y R T N F W I G H N M K D I . . . . . . 15075 TAAATGCACATATTCCTCCGGGGGACGATTGGGGCGTGGACATAAGGGTCTTTGTGATTC - M H I F L R G T I G A W T - G S L - F K C T Y S S G G R L G R G H K G L C D S L N A H I P P G D D W G V D I R V F V I . . 15135 AATCATCAATTCGC N H Q F I I N S Q S S I R Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0047I13.1+_PGL-5_AGS-1_PPS_1 (14837 15148) (frame '0'; 312 bp, 104 residues) 1 FTGQWNLYAQ NPDSSSHLFG TAEGAGTTIL TLLGGFHPQT QSLRLTDIAH YHLAIVFIFL 61 VAGHMYRTNF WIGHNMKDIL NAHIPPGDDW GVDIRVFVIQ SSIR 3-phase translation of AGS-1 (-strand): . . . . . . 15148 GCGAATTGATGATTGAATCACAAAGACCCTTATGTCCACGCCCCAATCGTCCCCCGGAGG A N - - L N H K D P Y V H A P I V P R R R I D D - I T K T L M S T P Q S S P G G E L M I E S Q R P L C P R P N R P P E . . . . . . 15088 AATATGTGCATTTAAAATATCTTTCATATTGTGCCCAATCCAGAAATTGGTTCTATACAT N M C I - N I F H I V P N P E I G S I H I C A F K I S F I L C P I Q K L V L Y I E Y V H L K Y L S Y C A Q S R N W F Y T . . . . . . 15028 ATGACCAGCAACAAGAAAAATAAATACAATAGCTAAATGATAATGGGCAATATCAGTCAG M T S N K K N K Y N S - M I M G N I S Q - P A T R K I N T I A K - - W A I S V S Y D Q Q Q E K - I Q - L N D N G Q Y Q S . . . . . . 14968 CCGTAAACTTTGTGTTTGTGGGTGGAATCCCCCGAGAAGAGTTAGAATGGTCGTTCCCGC P - T L C L W V E S P E K S - N G R S R R K L C V C G W N P P R R V R M V V P A A V N F V F V G G I P R E E L E W S F P . . . . . . 14908 CCCTTCGGCGGTACCAAATAAATGACTACTTGAATCGGGGTTTTGAGCATAAAGATTCCA P F G G T K - M T T - I G V L S I K I P P S A V P N K - L L E S G F - A - R F H P L R R Y Q I N D Y L N R G F E H K D S . . 14848 TTGACCTGTAAAAA L T C K - P V K I D L - K Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (14835 14873,14941 15015) SCR (e 1.000 d 0.000 a 0.000,e 0.887) Exon 1 14835 14873 ( 39 n); score: 1.000 Intron 1 14874 14940 ( 67 n); Pd: 0.000 Pa: 0.000 Exon 2 14941 15015 ( 75 n); score: 0.887 PGS (14835 14873,14941 15015) SGN-E314672+ 3-phase translation of AGS-2 (+strand): . . . . : . . 14835 TTTTTACAGGTCAATGGAATCTTTATGCTCAAAACCCCG : ATTCCACCCACAAACACAAAG F L Q V N G I F M L K T P : I P P T N T K F Y R S M E S L C S K P R : F H P Q T Q S F T G Q W N L Y A Q N P : D S T H K H K . . . . . . 14962 TTTACGGCTGACTGATATTGCCCATTATCATTTAGCTATTGTATTTATTTTTCT F T A D - Y C P L S F S Y C I Y F S L R L T D I A H Y H L A I V F I F V Y G - L I L P I I I - L L Y L F F Maximal non-overlapping open reading frames (>= 64 codons): none PGL 6 (+ strand): 32154 32848 AGS-1 (32154 32848) SCR (e 0.883) Exon 1 32154 32848 ( 695 n); score: 0.883 PGS (32154 32848) SGN-E262289- PGS (32245 32848) SGN-E551107- 3-phase translation of AGS-1 (+strand): . . . . . . 32154 TTTATGAAGATGGTAAGAATTATGCAAAGGACAATATTAAGAGCAACCATTTGTCAGAAA F M K M V R I M Q R T I L R A T I C Q K L - R W - E L C K G Q Y - E Q P F V R K Y E D G K N Y A K D N I K S N H L S E . . . . . . 32214 AAAGGTGCAGTGCATTATGGTTTTCCTTTGAATGGATTAAGATACTCTTTGCTCAACTCC K G A V H Y G F P L N G L R Y S L L N S K V Q C I M V F L - M D - D T L C S T P K R C S A L W F S F E W I K I L F A Q L . . . . . . 32274 TAGAGATAGAAATACGTTGTTATGTCAACAAAAATCCAGTGATAGTTATGGTGATCAAAC - R - K Y V V M S T K I Q - - L W - S N R D R N T L L C Q Q K S S D S Y G D Q T L E I E I R C Y V N K N P V I V M V I K . . . . . . 32334 ATGTGAGGGGGAACCACCCGTTTGATTATGGAAAGAGCTCAGTCAGAATCTTTCAGGTAT M - G G T T R L I M E R A Q S E S F R Y C E G E P P V - L W K E L S Q N L S G M H V R G N H P F D Y G K S S V R I F Q V . . . . . . 32394 GTTGATCCATCTCACATTTTTGTAATATATTCACATTTTCTATAACTTAAAAAAAGACAA V D P S H I F V I Y S H F L - L K K R Q L I H L T F L - Y I H I F Y N L K K D N C - S I S H F C N I F T F S I T - K K T . . . . . . 32454 CTTTTAGCGGCAATAACATGCACATTAACAAATAGTGCTAAAGCCATTACATGCATTAAT L L A A I T C T L T N S A K A I T C I N F - R Q - H A H - Q I V L K P L H A L I T F S G N N M H I N K - C - S H Y M H - . . . . . . 32514 TAATTGTCATTGGATCCTATATCTCAATAGGCTTTAGAGACATTTCCAAAGAATATTAAT - L S L D P I S Q - A L E T F P K N I N N C H W I L Y L N R L - R H F Q R I L I L I V I G S Y I S I G F R D I S K E Y - . . . . . . 32574 TGCCTCAAAGAATATATTTAGCAACAATTAAGCTATTTTCATTAATTAATTGCTACTAAA C L K E Y I - Q Q L S Y F H - L I A T K A S K N I F S N N - A I F I N - L L L K L P Q R I Y L A T I K L F S L I N C Y - . . . . . . 32634 GATCATTTTTGGTGTAGTGTATTATCACAACATTAAAAAAATGCAAACTTGATGATGACA D H F W C S V L S Q H - K N A N L M M T I I F G V V Y Y H N I K K M Q T - - - Q R S F L V - C I I T T L K K C K L D D D . . . . . . 32694 ATATTTTGCATTTTGGGCTTGTAAAATGATTGAGTGGCTTCAACAAGAAAAACAAAGCAT I F C I L G L - N D - V A S T R K T K H Y F A F W A C K M I E W L Q Q E K Q S I N I L H F G L V K - L S G F N K K N K A . . . . . . 32754 TTGGTATCAGTGTTCAAGTTGCAACTGAAGTAATTCAAATTGTTCCACGTGTAAGCACCG L V S V F K L Q L K - F K L F H V - A P W Y Q C S S C N - S N S N C S T C K H R F G I S V Q V A T E V I Q I V P R V S T . . . . 32814 TTGTTTTTTGTAAGTTAACGGGTAAAAGATGACAT L F F V S - R V K D D C F L - V N G - K M T V V F C K L T G K R - H Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0047I13.1+_PGL-6_AGS-1_PPS_1 (32156 32398) (frame '0'; 240 bp, 80 residues) 1 YEDGKNYAKD NIKSNHLSEK RCSALWFSFE WIKILFAQLL EIEIRCYVNK NPVIVMVIKH 61 VRGNHPFDYG KSSVRIFQVC - 3-phase translation of AGS-1 (-strand): . . . . . . 32848 ATGTCATCTTTTACCCGTTAACTTACAAAAAACAACGGTGCTTACACGTGGAACAATTTG M S S F T R - L T K N N G A Y T W N N L C H L L P V N L Q K T T V L T R G T I - V I F Y P L T Y K K Q R C L H V E Q F . . . . . . 32788 AATTACTTCAGTTGCAACTTGAACACTGATACCAAATGCTTTGTTTTTCTTGTTGAAGCC N Y F S C N L N T D T K C F V F L V E A I T S V A T - T L I P N A L F F L L K P E L L Q L Q L E H - Y Q M L C F S C - S . . . . . . 32728 ACTCAATCATTTTACAAGCCCAAAATGCAAAATATTGTCATCATCAAGTTTGCATTTTTT T Q S F Y K P K M Q N I V I I K F A F F L N H F T S P K C K I L S S S S L H F F H S I I L Q A Q N A K Y C H H Q V C I F . . . . . . 32668 TAATGTTGTGATAATACACTACACCAAAAATGATCTTTAGTAGCAATTAATTAATGAAAA - C C D N T L H Q K - S L V A I N - - K N V V I I H Y T K N D L - - Q L I N E N L M L - - Y T T P K M I F S S N - L M K . . . . . . 32608 TAGCTTAATTGTTGCTAAATATATTCTTTGAGGCAATTAATATTCTTTGGAAATGTCTCT - L N C C - I Y S L R Q L I F F G N V S S L I V A K Y I L - G N - Y S L E M S L I A - L L L N I F F E A I N I L W K C L . . . . . . 32548 AAAGCCTATTGAGATATAGGATCCAATGACAATTAATTAATGCATGTAATGGCTTTAGCA K A Y - D I G S N D N - L M H V M A L A K P I E I - D P M T I N - C M - W L - H - S L L R Y R I Q - Q L I N A C N G F S . . . . . . 32488 CTATTTGTTAATGTGCATGTTATTGCCGCTAAAAGTTGTCTTTTTTTAAGTTATAGAAAA L F V N V H V I A A K S C L F L S Y R K Y L L M C M L L P L K V V F F - V I E N T I C - C A C Y C R - K L S F F K L - K . . . . . . 32428 TGTGAATATATTACAAAAATGTGAGATGGATCAACATACCTGAAAGATTCTGACTGAGCT C E Y I T K M - D G S T Y L K D S D - A V N I L Q K C E M D Q H T - K I L T E L M - I Y Y K N V R W I N I P E R F - L S . . . . . . 32368 CTTTCCATAATCAAACGGGTGGTTCCCCCTCACATGTTTGATCACCATAACTATCACTGG L S I I K R V V P P H M F D H H N Y H W F P - S N G W F P L T C L I T I T I T G S F H N Q T G G S P S H V - S P - L S L . . . . . . 32308 ATTTTTGTTGACATAACAACGTATTTCTATCTCTAGGAGTTGAGCAAAGAGTATCTTAAT I F V D I T T Y F Y L - E L S K E Y L N F L L T - Q R I S I S R S - A K S I L I D F C - H N N V F L S L G V E Q R V S - . . . . . . 32248 CCATTCAAAGGAAAACCATAATGCACTGCACCTTTTTTCTGACAAATGGTTGCTCTTAAT P F K G K P - C T A P F F - Q M V A L N H S K E N H N A L H L F S D K W L L L I S I Q R K T I M H C T F F L T N G C S - . . . . 32188 ATTGTCCTTTGCATAATTCTTACCATCTTCATAAA I V L C I I L T I F I L S F A - F L P S S - Y C P L H N S Y H L H K Maximal non-overlapping open reading frames (>= 64 codons): none PGL 7 (- strand): 38123 37645 AGS-1 (38123 37645) SCR (e 0.891) Exon 1 38123 37645 ( 479 n); score: 0.891 PGS (38123 37645) SGN-E206529+ 3-phase translation of AGS-1 (-strand): . . . . . . 38123 TTTGAGGTCTGGTGGTGCATTTAAGAGATTATCCATTTCGGAGTGGAAGTGGGACCGCAT F E V W W C I - E I I H F G V E V G P H L R S G G A F K R L S I S E W K W D R I - G L V V H L R D Y P F R S G S G T A . . . . . . 38063 TACTATGGATTTTGTGGCTGGCCTACCACAAACTTCTAAAGGAGTTGATAGTATTTATGT Y Y G F C G W P T T N F - R S - - Y L C T M D F V A G L P Q T S K G V D S I Y V L L W I L W L A Y H K L L K E L I V F M . . . . . . 38003 CATCGTTGATCAATTGACCAAGTCAGCTCATTTCCTTCCCGTTCAGTCTTTATTTAGTGT H R - S I D Q V S S F P S R S V F I - C I V D Q L T K S A H F L P V Q S L F S V S S L I N - P S Q L I S F P F S L Y L V . . . . . . 37943 CGTGAGGTTGGCTCGTATCTACATTTGGGAGGTGGTTCGATTTCATGGGGTGCCAGTTTC R E V G S Y L H L G G G S I S W G A S F V R L A R I Y I W E V V R F H G V P V S S - G W L V S T F G R W F D F M G C Q F . . . . . . 37883 TATTATATCAGATCGGGGTTCTCAGTTCACTTCTTGATTTAAGACGACCTTTCAGGATGA Y Y I R S G F S V H F L I - D D L S G - I I S D R G S Q F T S - F K T T F Q D E L L Y Q I G V L S S L L D L R R P F R M . . . . . . 37823 GTTGGGCACCCGGGTTGACCTTAGCGCAGCTTTCCACCCGCAGACTGATGATCAGTCAGA V G H P G - P - R S F P P A D - - S V R L G T R V D L S A A F H P Q T D D Q S E S W A P G L T L A Q L S T R R L M I S Q . . . . . . 37763 GCATACTATTCAGGTCCTTGAGGATATGCTACATGTTTGTGTTTTGGAGTTTGGTGGTCA A Y Y S G P - G Y A T C L C F G V W W S H T I Q V L E D M L H V C V L E F G G Q S I L F R S L R I C Y M F V F W S L V V . . . . . . 37703 GTAGGACCAGTTCTCGCCTTTGGCGCAGTTTGCGTATAACAGCATCTTCCATTCTAACA V G P V L A F G A V C V - Q H L P F - - D Q F S P L A Q F A Y N S I F H S N S R T S S R L W R S L R I T A S S I L T Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0047I13.1-_PGL-7_AGS-1_PPS_1 (37938 37645) (frame '0'; 294 bp, 98 residues) 1 GWLVSTFGRW FDFMGCQFLL YQIGVLSSLL DLRRPFRMSW APGLTLAQLS TRRLMISQSI 61 LFRSLRICYM FVFWSLVVSR TSSRLWRSLR ITASSILT >C09HBa0047I13.1-_PGL-7_AGS-1_PPS_2 (38122 37847) (frame '2'; 273 bp, 91 residues) 1 LRSGGAFKRL SISEWKWDRI TMDFVAGLPQ TSKGVDSIYV IVDQLTKSAH FLPVQSLFSV 61 VRLARIYIWE VVRFHGVPVS IISDRGSQFT S- 3-phase translation of AGS-1 (+strand): . . . . . . 37645 TGTTAGAATGGAAGATGCTGTTATACGCAAACTGCGCCAAAGGCGAGAACTGGTCCTACT C - N G R C C Y T Q T A P K A R T G P T V R M E D A V I R K L R Q R R E L V L L L E W K M L L Y A N C A K G E N W S Y . . . . . . 37705 GACCACCAAACTCCAAAACACAAACATGTAGCATATCCTCAAGGACCTGAATAGTATGCT D H Q T P K H K H V A Y P Q G P E - Y A T T K L Q N T N M - H I L K D L N S M L - P P N S K T Q T C S I S S R T - I V C . . . . . . 37765 CTGACTGATCATCAGTCTGCGGGTGGAAAGCTGCGCTAAGGTCAACCCGGGTGCCCAACT L T D H Q S A G G K L R - G Q P G C P T - L I I S L R V E S C A K V N P G A Q L S D - S S V C G W K A A L R S T R V P N . . . . . . 37825 CATCCTGAAAGGTCGTCTTAAATCAAGAAGTGAACTGAGAACCCCGATCTGATATAATAG H P E R S S - I K K - T E N P D L I - - I L K G R L K S R S E L R T P I - Y N R S S - K V V L N Q E V N - E P R S D I I . . . . . . 37885 AAACTGGCACCCCATGAAATCGAACCACCTCCCAAATGTAGATACGAGCCAACCTCACGA K L A P H E I E P P P K C R Y E P T S R N W H P M K S N H L P N V D T S Q P H D E T G T P - N R T T S Q M - I R A N L T . . . . . . 37945 CACTAAATAAAGACTGAACGGGAAGGAAATGAGCTGACTTGGTCAATTGATCAACGATGA H - I K T E R E G N E L T W S I D Q R - T K - R L N G K E M S - L G Q L I N D D T L N K D - T G R K - A D L V N - S T M . . . . . . 38005 CATAAATACTATCAACTCCTTTAGAAGTTTGTGGTAGGCCAGCCACAAAATCCATAGTAA H K Y Y Q L L - K F V V G Q P Q N P - - I N T I N S F R S L W - A S H K I H S N T - I L S T P L E V C G R P A T K S I V . . . . . . 38065 TGCGGTCCCACTTCCACTCCGAAATGGATAATCTCTTAAATGCACCACCAGACCTCAAA C G P T S T P K W I I S - M H H Q T S A V P L P L R N G - S L K C T T R P Q M R S H F H S E M D N L L N A P P D L K Maximal non-overlapping open reading frames (>= 64 codons): none PGL 8 (- strand): 48241 45383 AGS-1 (48227 48133,45978 45383) SCR (e 0.847 d 0.992 a 0.997,e 0.868) Exon 1 48227 48133 ( 95 n); score: 0.847 Intron 1 48132 45979 (2154 n); Pd: 0.992 Pa: 0.997 Exon 2 45978 45383 ( 596 n); score: 0.868 PGS (45978 45383) SGN-E348336+ PGS (48227 48133,45978 45556) SGN-E310812+ 3-phase translation of AGS-1 (-strand): . . . . . . 48227 CTCTATTTCTTTTTTCTTCCAAACCTGATTTCTTGGCACTTTTCAGCTCAATTTTACAGT L Y F F F L P N L I S W H F S A Q F Y S S I S F F F Q T - F L G T F Q L N F T V L F L F S S K P D F L A L F S S I L Q . . . . : . . 48167 TCTATTGTCTTCTCAACAATATCTTTCGAAATCAG : GATGTCCTAGAGTTTGTCTCAATGT S I V F S T I S F E I R : M S - S L S Q C L L S S Q Q Y L S K S : G C P R V C L N V F Y C L L N N I F R N Q : D V L E F V S M . . . . . . 45953 ACTCTCAATTTGACATAGAGCAAGATCAAATGAATATAGACAACACAACATGAGGACAAA T L N L T - S K I K - I - T T Q H E D K L S I - H R A R S N E Y R Q H N M R T K Y S Q F D I E Q D Q M N I D N T T - G Q . . . . . . 45893 ACCAAGAACATGAAAAAGATAACGAGGAACAACTGCCAAATTCATTCCAAACAGTAGTAG T K N M K K I T R N N C Q I H S K Q - - P R T - K R - R G T T A K F I P N S S S N Q E H E K D N E E Q L P N S F Q T V V . . . . . . 45833 CCTTGGTTATTTCATTTTCATTTGGTATCATTGTGTCAATTTTTACTGTTGCATTATAGC P W L F H F H L V S L C Q F L L L H Y S L G Y F I F I W Y H C V N F Y C C I I A A L V I S F S F G I I V S I F T V A L - . . . . . . 45773 AAATTATAAGGTGAGACTGGTTGTGAATGTGGCTGCAATGAGATTGTCAGTTGTCATTGT K L - G E T G C E C G C N E I V S C H C N Y K V R L V V N V A A M R L S V V I V Q I I R - D W L - M W L Q - D C Q L S L . . . . . . 45713 TAGCATTTGGAGGAATTGGTACTTTTTTAAGCACAAGTCCTATGGTGAAATCTTGTCCAA - H L E E L V L F - A Q V L W - N L V Q S I W R N W Y F F K H K S Y G E I L S K L A F G G I G T F L S T S P M V K S C P . . . . . . 45653 GAGTTTTAATTGGAGGCAAGATGGCTATGGTCATTACCTTTTGCCTTACCAAGCTGATTA E F - L E A R W L W S L P F A L P S - L S F N W R Q D G Y G H Y L L P Y Q A D - R V L I G G K M A M V I T F C L T K L I . . . . . . 45593 ACTCTACTACAAGTATTTATTTCTGATTTTAATCTACGGTAATTTTTTCTTAAAATAATA T L L Q V F I S D F N L R - F F L K I I L Y Y K Y L F L I L I Y G N F F L K - - N S T T S I Y F - F - S T V I F S - N N . . . . . . 45533 ATTTAAGGCGTGAATGCTTATTTTGAATGCTGAAAAAAAGAAGTGATTCTAAGTTGCATT I - G V N A Y F E C - K K E V I L S C I F K A - M L I L N A E K K K - F - V A F N L R R E C L F - M L K K R S D S K L H . . . . . . 45473 TAAAGGAAGCTAATGCTCTATATGATGAATGATTAGGAGCGAATAAAGACAAATTTTTAT - R K L M L Y M M N D - E R I K T N F Y K G S - C S I - - M I R S E - R Q I F I L K E A N A L Y D E - L G A N K D K F L . . . . 45413 CATGGGTCTCCTTGAGTACTTCCTATTCAAA H G S P - V L P I Q M G L L E Y F L F K S W V S L S T S Y S Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0047I13.1-_PGL-8_AGS-1_PPS_1 (45871 45593) (frame '2'; 276 bp, 92 residues) 1 RGTTAKFIPN SSSLGYFIFI WYHCVNFYCC IIANYKVRLV VNVAAMRLSV VIVSIWRNWY 61 FFKHKSYGEI LSKSFNWRQD GYGHYLLPYQ AD- AGS-2 (47634 47473,47437 47416,46842 46837,46302 46283,46157 46113,45995 45584) SCR (e 0.753 d 0.000 a 0.000,e 0.636 d 0.350 a 0.718,e 0.667 d 0.714 a 0.936,e 0.550 d 0.611 a 0.000,e 0.556 d 0.988 a 0.000,e 0.792) Exon 1 47634 47473 ( 162 n); score: 0.753 Intron 1 47472 47438 ( 35 n); Pd: 0.000 Pa: 0.000 Exon 2 47437 47416 ( 22 n); score: 0.636 Intron 2 47415 46843 ( 573 n); Pd: 0.350 Pa: 0.718 Exon 3 46842 46837 ( 6 n); score: 0.667 Intron 3 46836 46303 ( 534 n); Pd: 0.714 Pa: 0.936 Exon 4 46302 46283 ( 20 n); score: 0.550 Intron 4 46282 46158 ( 125 n); Pd: 0.611 Pa: 0.000 Exon 5 46157 46113 ( 45 n); score: 0.556 Intron 5 46112 45996 ( 117 n); Pd: 0.988 Pa: 0.000 Exon 6 45995 45584 ( 412 n); score: 0.792 PGS (47634 47473,47437 47416,46842 46837,46302 46283,46157 46113,45995 45584) SGN-E544298+ PGS (47626 47473,47437 47416,46842 46837,46302 46283,46157 46113,45995 45836) SGN-E307423+ 3-phase translation of AGS-2 (-strand): . . . . . . 47634 GCTTCTTGAACTAACAAGTACTTATAACTTCTTAATGAGATGCTCAAAACCAAGTCTGGG A S - T N K Y L - L L N E M L K T K S G L L E L T S T Y N F L M R C S K P S L G F L N - Q V L I T S - - D A Q N Q V W . . . . . . 47574 TTACCATTCCTAAAGACCATAATGGCCAGAAGCAAGCCCTTGAGGAGGATTTTGATTATG L P F L K T I M A R S K P L R R I L I M Y H S - R P - W P E A S P - G G F - L - V T I P K D H N G Q K Q A L E E D F D Y . . . . . : . 47514 AGCACAGTGGGTTTGAGCCGTTGTTCTAGGAGCCAATGACGG : ATTGGTCCTAGTTACTCT S T V G L S R C S R S Q - R : I G P S Y S A Q W V - A V V L G A N D G : L V L V T L E H S G F E P L F - E P M T : D W S - L L . : : . . : . . . 47419 TCTG : GAAGGA : AGATTATTGCACCTATACAT : AAAGCTAAAAAGGTAAGTGAAGCTATATTA S : G R : K I I A P I H : K A K K V S E A I L L : E G : R L L H L Y I : K L K R - V K L Y Y F W : K E : D Y C T Y T : - S - K G K - S Y I . . : . . . . 46127 CTTAAGCCAATCAAG : TTTGCCGGTGCTTGCAGGATGTCCTAGAGTTTGTCTCAATGTACT L K P I K : F A G A C R M S - S L S Q C T L S Q S S : L P V L A G C P R V C L N V L T - A N Q : V C R C L Q D V L E F V S M Y . . . . . . 45950 CTCAATTTGACATAGAGCAAGATCAAATGAATATAGACAACACAACATGAGGACAAAACC L N L T - S K I K - I - T T Q H E D K T S I - H R A R S N E Y R Q H N M R T K P S Q F D I E Q D Q M N I D N T T - G Q N . . . . . . 45890 AAGAACATGAAAAAGATAACGAGGAACAACTGCCAAATTCATTCCAAACAGTAGTAGCCT K N M K K I T R N N C Q I H S K Q - - P R T - K R - R G T T A K F I P N S S S L Q E H E K D N E E Q L P N S F Q T V V A . . . . . . 45830 TGGTTATTTCATTTTCATTTGGTATCATTGTGTCAATTTTTACTGTTGCATTATAGCAAA W L F H F H L V S L C Q F L L L H Y S K G Y F I F I W Y H C V N F Y C C I I A N L V I S F S F G I I V S I F T V A L - Q . . . . . . 45770 TTATAAGGTGAGACTGGTTGTGAATGTGGCTGCAATGAGATTGTCAGTTGTCATTGTTAG L - G E T G C E C G C N E I V S C H C - Y K V R L V V N V A A M R L S V V I V S I I R - D W L - M W L Q - D C Q L S L L . . . . . . 45710 CATTTGGAGGAATTGGTACTTTTTTAAGCACAAGTCCTATGGTGAAATCTTGTCCAAGAG H L E E L V L F - A Q V L W - N L V Q E I W R N W Y F F K H K S Y G E I L S K S A F G G I G T F L S T S P M V K S C P R . . . . . . 45650 TTTTAATTGGAGGCAAGATGGCTATGGTCATTACCTTTTGCCTTACCAAGCTGATTAACT F - L E A R W L W S L P F A L P S - L T F N W R Q D G Y G H Y L L P Y Q A D - L V L I G G K M A M V I T F C L T K L I N . 45590 CTACTAC L L Y Y S T Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0047I13.1-_PGL-8_AGS-2_PPS_1 (45871 45593) (frame '2'; 276 bp, 92 residues) 1 RGTTAKFIPN SSSLGYFIFI WYHCVNFYCC IIANYKVRLV VNVAAMRLSV VIVSIWRNWY 61 FFKHKSYGEI LSKSFNWRQD GYGHYLLPYQ AD- AGS-3 (47187 46363) SCR (e 0.888) Exon 1 47187 46363 ( 825 n); score: 0.888 PGS (46936 46363) SGN-E275852+ PGS (47187 46829) SGN-E264499- 3-phase translation of AGS-3 (-strand): . . . . . . 47187 ATATATCTCCCCCATTTTCTCTTAATTGTTATAATCAAGATACTAAAAGGATAGAACAAT I Y L P H F L L I V I I K I L K G - N N Y I S P I F S - L L - S R Y - K D R T I I S P P F S L N C Y N Q D T K R I E Q . . . . . . 47127 ATGTTACTGACAAAAGTTCAAAATTGTTGCTTAGAGGTATAAAGCTATTTATAATGTAAA M L L T K V Q N C C L E V - S Y L - C K C Y - Q K F K I V A - R Y K A I Y N V K Y V T D K S S K L L L R G I K L F I M - . . . . . . 47067 GATCAACAAAAGTGGATACATTTGAAAAATAAGATCTTCCAACTATTTGAAAGTTATAGA D Q Q K W I H L K N K I F Q L F E S Y R I N K S G Y I - K I R S S N Y L K V I D R S T K V D T F E K - D L P T I - K L - . . . . . . 47007 CAATAAAAACAACATACTCAATGTAGTCCCACAAAATGATGTTTGCACTTTGTGGAGGGT Q - K Q H T Q C S P T K - C L H F V E G N K N N I L N V V P Q N D V C T L W R V T I K T T Y S M - S H K M M F A L C G G . . . . . . 46947 AGAGTGTATGCAAAACCTTAGCTATGCTTTAGAGGTAGACAGAATGTTGTATTATTGATG R V Y A K P - L C F R G R Q N V V L L M E C M Q N L S Y A L E V D R M L Y Y - - - S V C K T L A M L - R - T E C C I I D . . . . . . 46887 ACAATTAATGATATGAAAGTTGATCTTGCTTTGTCATACTTACAGGAAGGAGTATTCAAT T I N D M K V D L A L S Y L Q E G V F N Q L M I - K L I L L C H T Y R K E Y S I D N - - Y E S - S C F V I L T G R S I Q . . . . . . 46827 AGTAAATATACTTCCATACTTTTTTTCAAACTGTTAACTTTATATGCTTCTCTGTTTTGA S K Y T S I L F F K L L T L Y A S L F - V N I L P Y F F S N C - L Y M L L C F E - - I Y F H T F F Q T V N F I C F S V L . . . . . . 46767 GTATTGGTTCTTCAATATCCTTATTTATGTTGTGTTAAGCTACAGTTGATACACTTAAAG V L V L Q Y P Y L C C V K L Q L I H L K Y W F F N I L I Y V V L S Y S - Y T - R S I G S S I S L F M L C - A T V D T L K . . . . . . 46707 GAGCAAATATGCTCCTTACTCTACAAATTCATGTGTCACCTTAGGCTTCTTATACGGCCT E Q I C S L L Y K F M C H L R L L I R P S K Y A P Y S T N S C V T L G F L Y G L G A N M L L T L Q I H V S P - A S Y T A . . . . . . 46647 CATATGTGACGAGACTCAGTACTGAGGTGCAAATTATTCTCTCGCTCCTCTTTGGGTAAA H M - R D S V L R C K L F S R S S L G K I C D E T Q Y - G A N Y S L A P L W V N S Y V T R L S T E V Q I I L S L L F G - . . . . . . 46587 CAATGAAGATAATCTTCACTATGAAGCTTATTTGGTTCATGTTCTCTTTTTTTATTTCAA Q - R - S S L - S L F G S C S L F L F Q N E D N L H Y E A Y L V H V L F F Y F N T M K I I F T M K L I W F M F S F F I S . . . . . . 46527 TGATTTGAAGTAAATTGAATTATATTTACCATAGTTGTGTAAAAATACTTGAATAATTTT - F E V N - I I F T I V V - K Y L N N F D L K - I E L Y L P - L C K N T - I I F M I - S K L N Y I Y H S C V K I L E - F . . . . . . 46467 TAGACGGAATCATATTCCTGGGCAACTGCTCTTTCTTAAAGCATTTAAATGTATAAAGGT - T E S Y S W A T A L S - S I - M Y K G R R N H I P G Q L L F L K A F K C I K V L D G I I F L G N C S F L K H L N V - R . . . . . 46407 GAAACAAAAGGTGACTGCATGTGATTAGTGTTAAAGAGATAAAAT E T K G D C M - L V L K R - N K Q K V T A C D - C - R D K - N K R - L H V I S V K E I K Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-3 (+strand): . . . . . . 46363 ATTTTATCTCTTTAACACTAATCACATGCAGTCACCTTTTGTTTCACCTTTATACATTTA I L S L - H - S H A V T F C F T F I H L F Y L F N T N H M Q S P F V S P L Y I - F I S L T L I T C S H L L F H L Y T F . . . . . . 46423 AATGCTTTAAGAAAGAGCAGTTGCCCAGGAATATGATTCCGTCTAAAAATTATTCAAGTA N A L R K S S C P G I - F R L K I I Q V M L - E R A V A Q E Y D S V - K L F K Y K C F K K E Q L P R N M I P S K N Y S S . . . . . . 46483 TTTTTACACAACTATGGTAAATATAATTCAATTTACTTCAAATCATTGAAATAAAAAAAG F L H N Y G K Y N S I Y F K S L K - K K F Y T T M V N I I Q F T S N H - N K K R I F T Q L W - I - F N L L Q I I E I K K . . . . . . 46543 AGAACATGAACCAAATAAGCTTCATAGTGAAGATTATCTTCATTGTTTACCCAAAGAGGA R T - T K - A S - - R L S S L F T Q R G E H E P N K L H S E D Y L H C L P K E E E N M N Q I S F I V K I I F I V Y P K R . . . . . . 46603 GCGAGAGAATAATTTGCACCTCAGTACTGAGTCTCGTCACATATGAGGCCGTATAAGAAG A R E - F A P Q Y - V S S H M R P Y K K R E N N L H L S T E S R H I - G R I R S S E R I I C T S V L S L V T Y E A V - E . . . . . . 46663 CCTAAGGTGACACATGAATTTGTAGAGTAAGGAGCATATTTGCTCCTTTAAGTGTATCAA P K V T H E F V E - G A Y L L L - V Y Q L R - H M N L - S K E H I C S F K C I N A - G D T - I C R V R S I F A P L S V S . . . . . . 46723 CTGTAGCTTAACACAACATAAATAAGGATATTGAAGAACCAATACTCAAAACAGAGAAGC L - L N T T - I R I L K N Q Y S K Q R S C S L T Q H K - G Y - R T N T Q N R E A T V A - H N I N K D I E E P I L K T E K . . . . . . 46783 ATATAAAGTTAACAGTTTGAAAAAAAGTATGGAAGTATATTTACTATTGAATACTCCTTC I - S - Q F E K K Y G S I F T I E Y S F Y K V N S L K K S M E V Y L L L N T P S H I K L T V - K K V W K Y I Y Y - I L L . . . . . . 46843 CTGTAAGTATGACAAAGCAAGATCAACTTTCATATCATTAATTGTCATCAATAATACAAC L - V - Q S K I N F H I I N C H Q - Y N C K Y D K A R S T F I S L I V I N N T T P V S M T K Q D Q L S Y H - L S S I I Q . . . . . . 46903 ATTCTGTCTACCTCTAAAGCATAGCTAAGGTTTTGCATACACTCTACCCTCCACAAAGTG I L S T S K A - L R F C I H S T L H K V F C L P L K H S - G F A Y T L P S T K C H S V Y L - S I A K V L H T L Y P P Q S . . . . . . 46963 CAAACATCATTTTGTGGGACTACATTGAGTATGTTGTTTTTATTGTCTATAACTTTCAAA Q T S F C G T T L S M L F L L S I T F K K H H F V G L H - V C C F Y C L - L S N A N I I L W D Y I E Y V V F I V Y N F Q . . . . . . 47023 TAGTTGGAAGATCTTATTTTTCAAATGTATCCACTTTTGTTGATCTTTACATTATAAATA - L E D L I F Q M Y P L L L I F T L - I S W K I L F F K C I H F C - S L H Y K - I V G R S Y F S N V S T F V D L Y I I N . . . . . . 47083 GCTTTATACCTCTAAGCAACAATTTTGAACTTTTGTCAGTAACATATTGTTCTATCCTTT A L Y L - A T I L N F C Q - H I V L S F L Y T S K Q Q F - T F V S N I L F Y P F S F I P L S N N F E L L S V T Y C S I L . . . . . 47143 TAGTATCTTGATTATAACAATTAAGAGAAAATGGGGGAGATATAT - Y L D Y N N - E K M G E I Y S I L I I T I K R K W G R Y L V S - L - Q L R E N G G D I Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0047I13.1+_PGL-8_AGS-3_PPS_1 (46920 47153) (frame '0'; 231 bp, 77 residues) 1 SIAKVLHTLY PPQSANIILW DYIEYVVFIV YNFQIVGRSY FSNVSTFVDL YIINSFIPLS 61 NNFELLSVTY CSILLVS- AGS-4 (48222 48133,47595 47192) SCR (e 0.878 d 0.992 a 0.000,e 0.832) Exon 1 48222 48133 ( 90 n); score: 0.878 Intron 1 48132 47596 ( 537 n); Pd: 0.992 Pa: 0.000 Exon 2 47595 47192 ( 404 n); score: 0.832 PGS (48222 48133,47595 47192) SGN-E273665+ PGS (47409 47243) SGN-E342715+ 3-phase translation of AGS-4 (-strand): . . . . . . 48222 TTTCTTTTTTCTTCCAAACCTGATTTCTTGGCACTTTTCAGCTCAATTTTACAGTTCTAT F L F S S K P D F L A L F S S I L Q F Y F F F L P N L I S W H F S A Q F Y S S I S F F F Q T - F L G T F Q L N F T V L . . . : . . . 48162 TGTCTTCTCAACAATATCTTTCGAAATCAG : ATGCTCAAAACCAAGTCTGGGTTACCATTC C L L N N I F R N Q : M L K T K S G L P F V F S T I S F E I R : C S K P S L G Y H S L S S Q Q Y L S K S : D A Q N Q V W V T I . . . . . . 47565 CTAAAGACCATAATGGCCAGAAGCAAGCCCTTGAGGAGGATTTTGATTATGAGCACAGTG L K T I M A R S K P L R R I L I M S T V - R P - W P E A S P - G G F - L - A Q W P K D H N G Q K Q A L E E D F D Y E H S . . . . . . 47505 GGTTTGAGCCGTTGTTCTAGGAGCCAATGACGGATCAAAAATTCTAATTCGCAATTTCAT G L S R C S R S Q - R I K N S N S Q F H V - A V V L G A N D G S K I L I R N F I G F E P L F - E P M T D Q K F - F A I S . . . . . . 47445 AATCCAAAATTGGTCCTAGTTACTCTTCTGGTCAACTCACTGTCGATTCAATTTCTCTGC N P K L V L V T L L V N S L S I Q F L C I Q N W S - L L F W S T H C R F N F S A - S K I G P S Y S S G Q L T V D S I S L . . . . . . 47385 TATTTCTTTGAACTTCCATAAAAACATTTCAAGAGTTTTAGTATTATCTTATGCATTAGT Y F F E L P - K H F K S F S I I L C I S I S L N F H K N I S R V L V L S Y A L V L F L - T S I K T F Q E F - Y Y L M H - . . . . . . 47325 TGACTAATGCTGCTTGTTGTGCTGGTTAGAAAAAATTGGATGTATTTGCATGAAAAAGAT - L M L L V V L V R K N W M Y L H E K D D - C C L L C W L E K I G C I C M K K I L T N A A C C A G - K K L D V F A - K R . . . . . . 47265 TAAGTTTGTTTCAGATATTGTAATTCTTGGGCCCTCTCAAAGATGTTGTGACAAGCATAT - V C F R Y C N S W A L S K M L - Q A Y K F V S D I V I L G P S Q R C C D K H M L S L F Q I L - F L G P L K D V V T S I . . 47205 GCCCTACTATTTCT A L L F P Y Y F C P T I S Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0047I13.1-_PGL-8_AGS-4_PPS_1 (48222 48133,47595 47476) (frame '1'; 207 bp, 69 residues) 1 FLFSSKPDFL ALFSSILQFY CLLNNIFRNQ MLKTKSGLPF LKTIMARSKP LRRILIMSTV 61 GLSRCSRSQ- AGS-5 (48241 47649) SCR (e 0.858) Exon 1 48241 47649 ( 593 n); score: 0.858 PGS (48234 47649) SGN-E299508+ PGS (48241 47776) SGN-E248160+ 3-phase translation of AGS-5 (-strand): . . . . . . 48241 ACAACTCAAAGTCCCTCTATTTCTTTTTTCTTCCAAACCTGATTTCTTGGCACTTTTCAG T T Q S P S I S F F F Q T - F L G T F Q Q L K V P L F L F S S K P D F L A L F S N S K S L Y F F F L P N L I S W H F S . . . . . . 48181 CTCAATTTTACAGTTCTATTGTCTTCTCAACAATATCTTTCGAAATCAGGTAAGCTATTC L N F T V L L S S Q Q Y L S K S G K L F S I L Q F Y C L L N N I F R N Q V S Y S A Q F Y S S I V F S T I S F E I R - A I . . . . . . 48121 TCTCATTTTTTGCGAGCGAAACAAAACAGAGAACTCCTTCAATTCTTAGAATTCTTTTGA S H F L R A K Q N R E L L Q F L E F F - L I F C E R N K T E N S F N S - N S F E L S F F A S E T K Q R T P S I L R I L L . . . . . . 48061 AATTTTAAAATGTGTCAGTTCAAATTTTGTTCATATCCAATCTGATTGTTTTTTTTTTTC N F K M C Q F K F C S Y P I - L F F F F I L K C V S S N F V H I Q S D C F F F S K F - N V S V Q I L F I S N L I V F F F . . . . . . 48001 TGTTTTCCTGCCACAAAAAATCATTTTTCATTTCCATCTCATGTCATGTTTTTTTCTATT C F P A T K N H F S F P S H V M F F S I V F L P Q K I I F H F H L M S C F F L F L F S C H K K S F F I S I S C H V F F Y . . . . . . 47941 TTCATCCTTTGGACTTATTTGTGGAGGTATATTGTGTTAATTTTGTGTTAATACTTGAGT F I L W T Y L W R Y I V L I L C - Y L S S S F G L I C G G I L C - F C V N T - V F H P L D L F V E V Y C V N F V L I L E . . . . . . 47881 TCTTGAACCAATCTAGCAAGTTCATTCAGAGTTATACTATGCCTATTGTTAATCTCTAAC S - T N L A S S F R V I L C L L L I S N L E P I - Q V H S E L Y Y A Y C - S L T F L N Q S S K F I Q S Y T M P I V N L - . . . . . . 47821 TAATTTGATTCATGATTGTAGTGAAGGTTTGAAGGACAATTGTTTTATTTCTATATGCAT - F D S - L - - R F E G Q L F Y F Y M H N L I H D C S E G L K D N C F I S I C M L I - F M I V V K V - R T I V L F L Y A . . . . . . 47761 GTCTAATTTTCCTCTACTCTGATTCTCTGGCCTTCGGTCCTCTCTACAATTTTACTTTTT V - F S S T L I L W P S V L S T I L L F S N F P L L - F S G L R S S L Q F Y F F C L I F L Y S D S L A F G P L Y N F T F . . . . . . 47701 TAATTATCCTACTCTATAAACAACGCTGACCATGTCTTGATACAACACCCATC - L S Y S I N N A D H V L I Q H P N Y P T L - T T L T M S - Y N T H L I I L L Y K Q R - P C L D T T P I Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0047I13.1-_PGL-8_AGS-5_PPS_1 (48053 47823) (frame '0'; 228 bp, 76 residues) 1 NVSVQILFIS NLIVFFFLFS CHKKSFFISI SCHVFFYFHP LDLFVEVYCV NFVLILEFLN 61 QSSKFIQSYT MPIVNL- 3-phase translation of AGS-5 (+strand): . . . . . . 47649 GATGGGTGTTGTATCAAGACATGGTCAGCGTTGTTTATAGAGTAGGATAATTAAAAAAGT D G C C I K T W S A L F I E - D N - K S M G V V S R H G Q R C L - S R I I K K V W V L Y Q D M V S V V Y R V G - L K K . . . . . . 47709 AAAATTGTAGAGAGGACCGAAGGCCAGAGAATCAGAGTAGAGGAAAATTAGACATGCATA K I V E R T E G Q R I R V E E N - T C I K L - R G P K A R E S E - R K I R H A Y - N C R E D R R P E N Q S R G K L D M H . . . . . . 47769 TAGAAATAAAACAATTGTCCTTCAAACCTTCACTACAATCATGAATCAAATTAGTTAGAG - K - N N C P S N L H Y N H E S N - L E R N K T I V L Q T F T T I M N Q I S - R I E I K Q L S F K P S L Q S - I K L V R . . . . . . 47829 ATTAACAATAGGCATAGTATAACTCTGAATGAACTTGCTAGATTGGTTCAAGAACTCAAG I N N R H S I T L N E L A R L V Q E L K L T I G I V - L - M N L L D W F K N S S D - Q - A - Y N S E - T C - I G S R T Q . . . . . . 47889 TATTAACACAAAATTAACACAATATACCTCCACAAATAAGTCCAAAGGATGAAAATAGAA Y - H K I N T I Y L H K - V Q R M K I E I N T K L T Q Y T S T N K S K G - K - K V L T Q N - H N I P P Q I S P K D E N R . . . . . . 47949 AAAAACATGACATGAGATGGAAATGAAAAATGATTTTTTGTGGCAGGAAAACAGAAAAAA K N M T - D G N E K - F F V A G K Q K K K T - H E M E M K N D F L W Q E N R K K K K H D M R W K - K M I F C G R K T E K . . . . . . 48009 AAAAACAATCAGATTGGATATGAACAAAATTTGAACTGACACATTTTAAAATTTCAAAAG K N N Q I G Y E Q N L N - H I L K F Q K K T I R L D M N K I - T D T F - N F K R K K Q S D W I - T K F E L T H F K I S K . . . . . . 48069 AATTCTAAGAATTGAAGGAGTTCTCTGTTTTGTTTCGCTCGCAAAAAATGAGAGAATAGC N S K N - R S S L F C F A R K K - E N S I L R I E G V L C F V S L A K N E R I A E F - E L K E F S V L F R S Q K M R E - . . . . . . 48129 TTACCTGATTTCGAAAGATATTGTTGAGAAGACAATAGAACTGTAAAATTGAGCTGAAAA L P D F E R Y C - E D N R T V K L S - K Y L I S K D I V E K T I E L - N - A E K L T - F R K I L L R R Q - N C K I E L K . . . . . . 48189 GTGCCAAGAAATCAGGTTTGGAAGAAAAAAGAAATAGAGGGACTTTGAGTTGT V P R N Q V W K K K E I E G L - V C Q E I R F G R K K K - R D F E L S A K K S G L E E K R N R G T L S C Maximal non-overlapping open reading frames (>= 64 codons): none PGL 9 (+ strand): 51983 53188 AGS-1 (51983 52183,52218 53188) SCR (e 0.856 d 0.000 a 0.000,e 0.681) Exon 1 51983 52183 ( 201 n); score: 0.856 Intron 1 52184 52217 ( 34 n); Pd: 0.000 Pa: 0.000 Exon 2 52218 53188 ( 971 n); score: 0.681 PGS (51983 52183,52218 52352) SGN-E252547+ PGS (52218 52629) SGN-E353206+ PGS (52562 53188) SGN-E392027- PGS (52567 52837) SGN-E345139+ 3-phase translation of AGS-1 (+strand): . . . . . . 51983 TTGTAAAATCTCCTATGTGCTTGATTGTGTGGTTGTATGTTTAGATTGTGTGGTTTGTGA L - N L L C A - L C G C M F R L C G L - C K I S Y V L D C V V V C L D C V V C D V K S P M C L I V W L Y V - I V W F V . . . . . . 52043 TTGGCCTAAAATTATGAGGCTGTTGAATTTCTAATCTTGAACCCTCTCTATTAAAATGAA L A - N Y E A V E F L I L N P L Y - N E W P K I M R L L N F - S - T L S I K M K I G L K L - G C - I S N L E P S L L K - . . . . . . 52103 GCCTTGAATAAATAAGGTTTCTTGAAACAAAATAATGAGATAATTGGATCGGAGTGTCAT A L N K - G F L K Q N N E I I G S E C H P - I N K V S - N K I M R - L D R S V M S L E - I R F L E T K - - D N W I G V S . . . : . . . 52163 GTTCCGACATGGTATTATTGG : ATCGGAGTGTCACGTTCCGACACAATAATATTAAAGGCA V P T W Y Y W : I G V S R S D T I I L K A F R H G I I G : S E C H V P T Q - Y - R Q C S D M V L L : D R S V T F R H N N I K G . . . . . . 52257 AGGAATCTTGAAGTAACTTAATATATTTAATCTCAAAGAACCTATTTTCCAAATGAGAAT R N L E V T - Y I - S Q R T Y F P N E N G I L K - L N I F N L K E P I F Q M R M K E S - S N L I Y L I S K N L F S K - E . . . . . . 52317 GGTATGGAGGCATGAGTCCTCATAAGGGTGCTTAATGTTGTGATTAATGGTGTACCTATT G M E A - V L I R V L N V V I N G V P I V W R H E S S - G C L M L - L M V Y L L W Y G G M S P H K G A - C C D - W C T Y . . . . . . 52377 ATGGTGTTGTTGTCAATGGTTCATGTTTTTGTTGCTTGCCACCTGTTAAGTGTAGTAGTT M V L L S M V H V F V A C H L L S V V V W C C C Q W F M F L L L A T C - V - - F Y G V V V N G S C F C C L P P V K C S S . . . . . . 52437 TATTTTATATATTATTATTCAATATATATTGATTTCTATTTTGAGTTGACCGATGATACC Y F I Y Y Y S I Y I D F Y F E L T D D T I L Y I I I Q Y I L I S I L S - P M I P L F Y I L L F N I Y - F L F - V D R - Y . . . . . . 52497 TACTCAGTACGTGTTCCTTGTACTGACCCCTACTTGTATTTTCTTCTCTGTTCTTTTGTG Y S V R V P C T D P Y L Y F L L C S F V T Q Y V F L V L T P T C I F F S V L L W L L S T C S L Y - P L L V F S S L F F C . . . . . . 52557 GAGTGCAGCTAGTGTATTATCGACTTCGACTCGCCCTCAGCTCTAGCCAGTCTTCAACAT E C S - C I I D F D S P S A L A S L Q H S A A S V L S T S T R P Q L - P V F N I G V Q L V Y Y R L R L A L S S S Q S S T . . . . . . 52617 ATCAGAGTCCAGTGTGAGCTATTAATTCTAGCTCGTGCTGGATTTTCTCATTCACATCTT I R V Q C E L L I L A R A G F S H S H L S E S S V S Y - F - L V L D F L I H I L Y Q S P V - A I N S S S C W I F S F T S . . . . . . 52677 GATGTCTTTGAATTTCGGACATGGGCCATCTTTTTGCTTATTTTGGTTTCTTAAATATTT D V F E F R T W A I F L L I L V S - I F M S L N F G H G P S F C L F W F L K Y F - C L - I S D M G H L F A Y F G F L N I . . . . . . 52737 TTAGACTTGATAATTTGGAAATAGATGTCCTTGATGTGATGACTATCAGATTTTGGGATA L D L I I W K - M S L M - - L S D F G I - T - - F G N R C P - C D D Y Q I L G - F R L D N L E I D V L D V M T I R F W D . . . . . . 52797 ATAAGTATTAAGCTTTAGAAACTTATTTAAATTGGTTACTTAAGTTGCTATTTATAGTTG I S I K L - K L I - I G Y L S C Y L - L - V L S F R N L F K L V T - V A I Y S - N K Y - A L E T Y L N W L L K L L F I V . . . . . . 52857 AATTGTTGGTATATGTTGGGGTTCGGATTCATTGGTTCGCCCACCTAGGGGGTAAGTGTG N C W Y M L G F G F I G S P T - G V S V I V G I C W G S D S L V R P P R G - V W E L L V Y V G V R I H W F A H L G G K C . . . . . . 52917 GGTGTCACTCACGACTCATTTTGGGTCGTGACAAACTTGGTATCAAAGCGTTAGGTTTGT G V T H D S F W V V T N L V S K R - V C V S L T T H F G S - Q T W Y Q S V R F V G C H S R L I L G R D K L G I K A L G L . . . . . . 52977 TGGTCTCATCACACAAGTACAAGTCTAGTAGAGTCTTGAGGAACGATATGCGTACGCCTT W S H H T S T S L V E S - G T I C V R L G L I T Q V Q V - - S L E E R Y A Y A F L V S S H K Y K S S R V L R N D M R T P . . . . . . 53037 TACTTATCTTCGAGAGGCCATAGGACTTAAGGAAAACTTCATTCATTCTTTCTTTCGTGT Y L S S R G H R T - G K L H S F F L S C T Y L R E A I G L K E N F I H S F F R V L L I F E R P - D L R K T S F I L S F V . . . . . . 53097 TATTACTTTGATTCAATTTGTATCTGGTGATACAAATTGGTATCTGACCTTCTCACTCTA Y Y F D S I C I W - Y K L V S D L L T L I T L I Q F V S G D T N W Y L T F S L Y L L L - F N L Y L V I Q I G I - P S H S . . . . 53157 TTTCACAGATGGTTAGAACTAGAGCAACAACT F H R W L E L E Q Q F T D G - N - S N N I S Q M V R T R A T T Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0047I13.1+_PGL-9_AGS-1_PPS_1 (52808 53059) (frame '0'; 249 bp, 83 residues) 1 ALETYLNWLL KLLFIVELLV YVGVRIHWFA HLGGKCGCHS RLILGRDKLG IKALGLLVSS 61 HKYKSSRVLR NDMRTPLLIF ERP- >C09HBa0047I13.1+_PGL-9_AGS-1_PPS_2 (52332 52568) (frame '1'; 234 bp, 78 residues) 1 VLIRVLNVVI NGVPIMVLLS MVHVFVACHL LSVVVYFIYY YSIYIDFYFE LTDDTYSVRV 61 PCTDPYLYFL LCSFVECS- PGL 10 (+ strand): 53944 58167 AGS-1 (53944 54110,54890 55141,56310 57162) SCR (e 0.775 d 0.000 a 0.000,e 0.841 d 0.000 a 0.683,e 0.866) Exon 1 53944 54110 ( 167 n); score: 0.775 Intron 1 54111 54889 ( 779 n); Pd: 0.000 Pa: 0.000 Exon 2 54890 55141 ( 252 n); score: 0.841 Intron 2 55142 56309 (1168 n); Pd: 0.000 Pa: 0.683 Exon 3 56310 57162 ( 853 n); score: 0.866 PGS (53944 54110,54890 55141,56310 56591) SGN-E353359- PGS (56414 57092) SGN-E368762- PGS (56453 57162) SGN-E379315- PGS (56568 57162) SGN-E375319- PGS (56638 57162) SGN-E204434- PGS (56734 57092) SGN-E240817- 3-phase translation of AGS-1 (+strand): . . . . . . 53944 GCAAGGAAGATGTCTTTTATTACTTATGAGGCCAAATTTCGTGCACTATCCAGGTATGCC A R K M S F I T Y E A K F R A L S R Y A Q G R C L L L L M R P N F V H Y P G M P K E D V F Y Y L - G Q I S C T I Q V C . . . . . . 54004 ACTAATCTTTGCTTCAATCCACAAGAGCGGATTTGGCTCTTTGTGAAAGGATTGAGGTTA T N L C F N P Q E R I W L F V K G L R L L I F A S I H K S G F G S L - K D - G - H - S L L Q S T R A D L A L C E R I E V . . . . . : . 54064 GATTTTGCATATTCCATCCTTATAGGTAGCTTCTGCAGCCAAATCCT : TTCTAGATATGGT D F A Y S I L I G S F C S Q I L : S R Y G I L H I P S L - V A S A A K S : F L D M V R F C I F H P Y R - L L Q P N P : F - I W . . . . . . 54903 TGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGAAATCTTAGATTG - F - C N S G Y D L A F S K F - N L R L D F D V I L G M T W L S P N F E I L D C L I L M - F W V - L G F L Q I L K S - I . . . . . . 54963 TAATGCTAAAACTGTTACATTGGCCAAGCCTGGGACAGATTCGCTAGTATAGGAGGGTGA - C - N C Y I G Q A W D R F A S I G G - N A K T V T L A K P G T D S L V - E G D V M L K L L H W P S L G Q I R - Y R R V . . . . . . 55023 CTATATTTCCACTCCAGTTCGTATTATTTCTTGTCTTCGTGCTAAAAGGATGGTGAGTAA L Y F H S S S Y Y F L S S C - K D G E - Y I S T P V R I I S C L R A K R M V S K T I F P L Q F V L F L V F V L K G W - V . . . . . . : 55083 GGGTTTTTTAGATTTCTTGTCACATATCAAGGATGATACTTCCAAAGTATCTTTGATTG : A G F F R F L V T Y Q G - Y F Q S I F D - : G F L D F L S H I K D D T S K V S L I : D R V F - I S C H I S R M I L P K Y L - L : . . . . . . 56311 CCTCTGTTTCGATAGTCTGTGAGTTTCTAGATGTTTTTCCTGCAGACCTTCCTAGTATGC P L F R - S V S F - M F F L Q T F L V C L C F D S L - V S R C F S C R P S - Y A T S V S I V C E F L D V F P A D L P S M . . . . . . 56371 CACTGGATAGGGATATTGATTTTTGTATTGATGTGGAACGGTTACTCGCCCCATTTCCAT H W I G I L I F V L M W N G Y S P H F H T G - G Y - F L Y - C G T V T R P I S I P L D R D I D F C I D V E R L L A P F P . . . . . . 56431 TCCCCCTTATAGAATGGCTCCAGCTGAGTTGAGGGAGTTAAAGGCCCAACTTCAGGAGTT S P L - N G S S - V E G V K G P T S G V P P Y R M A P A E L R E L K A Q L Q E L F P L I E W L Q L S - G S - R P N F R S . . . . . . 56491 GTTAGGTAAAGGTTTTATTAGACCGAGTGCAGCACCTTGGGGTGCTCTGGTTTTATTTGT V R - R F Y - T E C S T L G C S G F I C L G K G F I R P S A A P W G A L V L F V C - V K V L L D R V Q H L G V L W F Y L . . . . . . 56551 GAAGAAGAAAGATGAAAGTTTTCGGATGTGCATAGAATACAGGCAGCTGAATAAGGTAAC E E E R - K F S D V H R I Q A A E - G N K K K D E S F R M C I E Y R Q L N K V T - R R K M K V F G C A - N T G S - I R - . . . . . . 56611 TCTTAAGAACAAGTATCTCATTCCTTGCATTGATGATTAGTTCGATTAAGTACAAGGTGC S - E Q V S H S L H - - L V R L S T R C L K N K Y L I P C I D D - F D - V Q G A L L R T S I S F L A L M I S S I K Y K V . . . . . . 56671 TTGTGTCTTCTCTAAAATTGATTTGACATCCGGTTATCAGCAATTGAAAATATGGGCAAC L C L L - N - F D I R L S A I E N M G N C V F S K I D L T S G Y Q Q L K I W A T L V S S L K L I - H P V I S N - K Y G Q . . . . . . 56731 AAATGTGCCAAAGACTGCTTTTTGAACCAGGTGTGGGCATTATGAATTCTTAGTAAAGTC K C A K D C F L N Q V W A L - I L S K V N V P K T A F - T R C G H Y E F L V K S Q M C Q R L L F E P G V G I M N S - - S . . . . . . 56791 TTTTGGGCTTAAGAATGCCCCTGCTGCTTTCATGGGCCTGATGAACGGGATTTTTAAGCC F W A - E C P C C F H G P D E R D F - A F G L K N A P A A F M G L M N G I F K P L L G L R M P L L L S W A - - T G F L S . . . . . . 56851 ATATCTGGAGCTCTTTGTTATTGTATTTATTGATGATATACTAATATACTCAAAGAGTAG I S G A L C Y C I Y - - Y T N I L K E - Y L E L F V I V F I D D I L I Y S K S R H I W S S L L L Y L L M I Y - Y T Q R V . . . . . . 56911 GAAAGAACATGAGGAGCATTTGAGAAGTCTATTGGAGTTGTTAATGGAGAAAAATCTTTA E R T - G A F E K S I G V V N G E K S L K E H E E H L R S L L E L L M E K N L Y G K N M R S I - E V Y W S C - W R K I F . . . . . . 56971 TGCCAAATTCTTTAAGTGTGAGTTTTGTCTTGCTTCAGTGTCCTTCTTGGGGCATGTGGT C Q I L - V - V L S C F S V L L G A C G A K F F K C E F C L A S V S F L G H V V M P N S L S V S F V L L Q C P S W G M W . . . . . . 57031 TTCTAAGGATGGAGTGATGGTGGATCATTCTAAGATTGAAGCAGTGAAGATTTGGGTAAA F - G W S D G G S F - D - S S E D L G K S K D G V M V D H S K I E A V K I W V K F L R M E - W W I I L R L K Q - R F G - . . . . . . 57091 ACCTACTAATGTTTCAGATGTAACGAGCTTTGTTGGTTTAGCTAGCTACTACCGTCGATT T Y - C F R C N E L C W F S - L L P S I P T N V S D V T S F V G L A S Y Y R R F N L L M F Q M - R A L L V - L A T T V D . . 57151 CATCTAGGTATT H L G I I - V S S R Y Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0047I13.1+_PGL-10_AGS-1_PPS_1 (56756 57157) (frame '2'; 399 bp, 133 residues) 1 TRCGHYEFLV KSFGLKNAPA AFMGLMNGIF KPYLELFVIV FIDDILIYSK SRKEHEEHLR 61 SLLELLMEKN LYAKFFKCEF CLASVSFLGH VVSKDGVMVD HSKIEAVKIW VKPTNVSDVT 121 SFVGLASYYR RFI- >C09HBa0047I13.1+_PGL-10_AGS-1_PPS_2 (56402 56650) (frame '2'; 246 bp, 82 residues) 1 CGTVTRPISI PPYRMAPAEL RELKAQLQEL LGKGFIRPSA APWGALVLFV KKKDESFRMC 61 IEYRQLNKVT LKNKYLIPCI DD- AGS-2 (54203 54325,55486 56294,56341 56531) SCR (e 0.748 d 0.000 a 0.000,e 0.786 d 0.000 a 0.000,e 0.861) Exon 1 54203 54325 ( 123 n); score: 0.748 Intron 1 54326 55485 (1160 n); Pd: 0.000 Pa: 0.000 Exon 2 55486 56294 ( 809 n); score: 0.786 Intron 2 56295 56340 ( 46 n); Pd: 0.000 Pa: 0.000 Exon 3 56341 56531 ( 191 n); score: 0.861 PGS (54203 54325,55486 55918) SGN-E244046- PGS (55797 56125) SGN-E352716- PGS (55827 56294,56341 56531) SGN-E352117+ 3-phase translation of AGS-2 (+strand): . . . . . . 54203 GGTGAGTTTAGTGGTTCTTACTCCAGAGGGCAGAGTTCATGAGGTTATCCAGCCCGTGAG G E F S G S Y S R G Q S S - G Y P A R E V S L V V L T P E G R V H E V I Q P V R - V - W F L L Q R A E F M R L S S P - . . . . . . 54263 ATTCAGTCTTCATTGCAGGCTTCAGGTGGGGGTCCGTCGTAGACCAGTCAGCCTTTTTCT I Q S S L Q A S G G G P S - T S Q P F S F S L H C R L Q V G V R R R P V S L F L D S V F I A G F R W G S V V D Q S A F F . : . . . . . 54323 GAG : AGACCTATACTTGACTCCAGGACTTGTTATGGATGTGGAGAGGTTGGACGTATTAGG E : R P I L D S R T C Y G C G E V G R I R R : D L Y L T P G L V M D V E R L D V L G - : E T Y T - L Q D L L W M W R G W T Y - . . . . . . 55543 AAATACTGTCCAAAACAGAGTTACAGACCCCTAATAGGTAGAGGTAGAGGTGGTCTTGGT K Y C P K Q S Y R P L I G R G R G G L G N T V Q N R V T D P - - V E V E V V L V E I L S K T E L Q T P N R - R - R W S W . . . . . . 55603 AGAGGCCGCCATTCTGGAGGACGTGGTGGCTAAGGTAATGGCAGTCACTAATTCACTCGG R G R H S G G R G G - G N G S H - F T R E A A I L E D V V A K V M A V T N S L G - R P P F W R T W W L R - W Q S L I H S . . . . . . 55663 GTTGGCAGGCAAGTTGGAACTATTGCAGCGCAACTTGGTGGGGCAGTGGACAGATAGGTG V G R Q V G T I A A Q L G G A V D R - V L A G K L E L L Q R N L V G Q W T D R - G W Q A S W N Y C S A T W W G S G Q I G . . . . . . 55723 ATAGGGCCCATGGTTATGCTTTCCCCGAGAGGTCTGAAGTAGAGACATGTGATGTTGTTA I G P M V M L S P R G L K - R H V M L L - G P W L C F P R E V - S R D M - C C Y D R A H G Y A F P E R S E V E T C D V V . . . . . . 55783 TCACATGTACTCTTTTGGTTTGTGATTGCATGACTTTTGTATTGTTTGATCCACGATACA S H V L F W F V I A - L L Y C L I H D T H M Y S F G L - L H D F C I V - S T I H I T C T L L V C D C M T F V L F D P R Y . . . . . . 55843 CATTTTCATATGTATCTTCCTCATTTGCTACTGGTCTTGATTTATATTGTGATTTTCTTG H F H M Y L P H L L L V L I Y I V I F L I F I C I F L I C Y W S - F I L - F S - T F S Y V S S S F A T G L D L Y C D F L . . . . . . 55903 ACATACCTATTCGTGTCTCTACTACTGTGGGTGAGTCTGTGATAGTTGTGAAGGTGTATA T Y L F V S L L L W V S L - - L - R C I H T Y S C L Y Y C G - V C D S C E G V - D I P I R V S T T V G E S V I V V K V Y . . . . . . 55963 GGTCTTGCCTTGTGACTTTTGTGGGAAGCAATACTTATGTAGATTTTATTATTCTAGAGA G L A L - L L W E A I L M - I L L F - R V L P C D F C G K Q Y L C R F Y Y S R D R S C L V T F V G S N T Y V D F I I L E . . . . . . 56023 TGGTTGTTTTTGATGTAATTCAGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCATAG W L F L M - F R V - L G F L Q I L Q S - G C F - C N S G Y D L A F S K F C N H R M V V F D V I Q G M T W L S P N F A I I . . . . . . 56083 ATTGTAATGCTAAACTGTGTTATTAGCCAAACCTGGGACAGATTCGCTAGTATGGGAGGG I V M L N C V I S Q T W D R F A S M G G L - C - T V L L A K P G T D S L V W E G D C N A K L C Y - P N L G Q I R - Y G R . . . . . . 56143 TGACTATATTTCCACTCCCGTTCGTATTATCTCTTGTCTTTGTGCTAAGAGGATGGTGAG - L Y F H S R S Y Y L L S L C - E D G E D Y I S T P V R I I S C L C A K R M V S V T I F P L P F V L S L V F V L R G W - . . . . . . 56203 TAAGGTTTGTTTATATTTGTTGGCACATCTCACGGATGATACTTCCAAAGTACCTTCGAT - G L F I F V G T S H G - Y F Q S T F D K V C L Y L L A H L T D D T S K V P S I V R F V Y I C W H I S R M I L P K Y L R . . . . : . . 56263 TGAGTCTGTTTCGATAGTCCGTGAGTTTCTAG : ATGTTTTTCCTGCAGACCTTCCTAGTAT - V C F D S P - V S R : C F S C R P S - Y E S V S I V R E F L : D V F P A D L P S M L S L F R - S V S F - : M F F L Q T F L V . . . . . . 56369 GCCACTGGATAGGGATATTGATTTTTGTATTGATGTGGAACGGTTACTCGCCCCATTTCC A T G - G Y - F L Y - C G T V T R P I S P L D R D I D F C I D V E R L L A P F P C H W I G I L I F V L M W N G Y S P H F . . . . . . 56429 ATTCCCCCTTATAGAATGGCTCCAGCTGAGTTGAGGGAGTTAAAGGCCCAACTTCAGGAG I P P Y R M A P A E L R E L K A Q L Q E F P L I E W L Q L S - G S - R P N F R S H S P L - N G S S - V E G V K G P T S G . . . . . 56489 TTGTTAGGTAAAGGTTTTATTAGACCGAGTGCAGCACCTTGGG L L G K G F I R P S A A P W C - V K V L L D R V Q H L G V V R - R F Y - T E C S T L Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0047I13.1+_PGL-10_AGS-2_PPS_1 (55641 56108) (frame '0'; 465 bp, 155 residues) 1 WQSLIHSGWQ ASWNYCSATW WGSGQIGDRA HGYAFPERSE VETCDVVITC TLLVCDCMTF 61 VLFDPRYTFS YVSSSFATGL DLYCDFLDIP IRVSTTVGES VIVVKVYRSC LVTFVGSNTY 121 VDFIILEMVV FDVIQGMTWL SPNFAIIDCN AKLCY- >C09HBa0047I13.1+_PGL-10_AGS-2_PPS_2 (56096 56294,56341 56462) (frame '2'; 318 bp, 106 residues) 1 TVLLAKPGTD SLVWEGDYIS TPVRIISCLC AKRMVSKVCL YLLAHLTDDT SKVPSIESVS 61 IVREFLDVFP ADLPSMPLDR DIDFCIDVER LLAPFPFPLI EWLQLS- >C09HBa0047I13.1+_PGL-10_AGS-2_PPS_3 (54204 54325,55486 55576) (frame '2'; 210 bp, 70 residues) 1 VSLVVLTPEG RVHEVIQPVR FSLHCRLQVG VRRRPVSLFL RDLYLTPGLV MDVERLDVLG 61 NTVQNRVTDP - AGS-3 (54639 55000,56124 56301) SCR (e 0.845 d 0.000 a 0.430,e 0.798) Exon 1 54639 55000 ( 362 n); score: 0.845 Intron 1 55001 56123 (1123 n); Pd: 0.000 Pa: 0.430 Exon 2 56124 56301 ( 178 n); score: 0.798 PGS (54639 55000,56124 56301) SGN-E355026- PGS (54673 55002) SGN-E352716- 3-phase translation of AGS-3 (+strand): . . . . . . 54639 AGAGACATCTGATGCTGTTATCACAAGTACTTTTTTGGTCTGTGATTGCATGACTTTTGT R D I - C C Y H K Y F F G L - L H D F C E T S D A V I T S T F L V C D C M T F V R H L M L L S Q V L F W S V I A - L L . . . . . . 54699 ATTGTTTGATCCTGGATACACATTTTCATATGAATCTTCCTCATTTGCTACTGGTCTTGA I V - S W I H I F I - I F L I C Y W S - L F D P G Y T F S Y E S S S F A T G L D Y C L I L D T H F H M N L P H L L L V L . . . . . . 54759 TTTATATTGTGATTTGCTTGACATGCCTATTCATGTCTCTACTCATGTGGGTGAGTCTGT F I L - F A - H A Y S C L Y S C G - V C L Y C D L L D M P I H V S T H V G E S V I Y I V I C L T C L F M S L L M W V S L . . . . . . 54819 GATAGTTGAGAAGATGTAACGGTCTTGCCTTGTGATTTTTGTGGGGAGCAATACTTATGT D S - E D V T V L P C D F C G E Q Y L C I V E K M - R S C L V I F V G S N T Y V - - L R R C N G L A L - F L W G A I L M . . . . . . 54879 AGATTTGATTATTCTAGATATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTC R F D Y S R Y G - F - C N S G Y D L A F D L I I L D M V D F D V I L G M T W L S - I - L F - I W L I L M - F W V - L G F . . . . . . 54939 TCCAAATTTTGAAATCTTAGATTGTAATGCTAAAACTGTTACATTGGCCAAGCCTGGGAC S K F - N L R L - C - N C Y I G Q A W D P N F E I L D C N A K T V T L A K P G T L Q I L K S - I V M L K L L H W P S L G . : . . . . . 54999 AG : ATTCGCTAGTATGGGAGGGTGACTATATTTCCACTCCCGTTCGTATTATCTCTTGTCT R : F A S M G G - L Y F H S R S Y Y L L S : D S L V W E G D Y I S T P V R I I S C L Q : I R - Y G R V T I F P L P F V L S L V . . . . . . 56182 TTGTGCTAAGAGGATGGTGAGTAAGGTTTGTTTATATTTGTTGGCACATCTCACGGATGA L C - E D G E - G L F I F V G T S H G - C A K R M V S K V C L Y L L A H L T D D F V L R G W - V R F V Y I C W H I S R M . . . . . . 56242 TACTTCCAAAGTACCTTCGATTGAGTCTGTTTCGATAGTCCGTGAGTTTCTAGATGTGTT Y F Q S T F D - V C F D S P - V S R C V T S K V P S I E S V S I V R E F L D V I L P K Y L R L S L F R - S V S F - M C Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0047I13.1+_PGL-10_AGS-3_PPS_1 (54838 55000,56124 56299) (frame '2'; 339 bp, 113 residues) 1 RSCLVIFVGS NTYVDLIILD MVDFDVILGM TWLSPNFEIL DCNAKTVTLA KPGTDSLVWE 61 GDYISTPVRI ISCLCAKRMV SKVCLYLLAH LTDDTSKVPS IESVSIVREF LDV >C09HBa0047I13.1+_PGL-10_AGS-3_PPS_2 (54640 54837) (frame '2'; 195 bp, 65 residues) 1 ETSDAVITST FLVCDCMTFV LFDPGYTFSY ESSSFATGLD LYCDLLDMPI HVSTHVGESV 61 IVEKM- AGS-4 (54645 55000,56124 56264,56310 56574) SCR (e 0.838 d 0.000 a 0.430,e 0.809 d 0.000 a 0.683,e 0.828) Exon 1 54645 55000 ( 356 n); score: 0.838 Intron 1 55001 56123 (1123 n); Pd: 0.000 Pa: 0.430 Exon 2 56124 56264 ( 141 n); score: 0.809 Intron 2 56265 56309 ( 45 n); Pd: 0.000 Pa: 0.683 Exon 3 56310 56574 ( 265 n); score: 0.828 PGS (54645 55000,56124 56264,56310 56574) SGN-E355244- PGS (54746 55000,56124 56264,56310 56574) SGN-E351414- 3-phase translation of AGS-4 (+strand): . . . . . . 54645 ATCTGATGCTGTTATCACAAGTACTTTTTTGGTCTGTGATTGCATGACTTTTGTATTGTT I - C C Y H K Y F F G L - L H D F C I V S D A V I T S T F L V C D C M T F V L F L M L L S Q V L F W S V I A - L L Y C . . . . . . 54705 TGATCCTGGATACACATTTTCATATGAATCTTCCTCATTTGCTACTGGTCTTGATTTATA - S W I H I F I - I F L I C Y W S - F I D P G Y T F S Y E S S S F A T G L D L Y L I L D T H F H M N L P H L L L V L I Y . . . . . . 54765 TTGTGATTTGCTTGACATGCCTATTCATGTCTCTACTCATGTGGGTGAGTCTGTGATAGT L - F A - H A Y S C L Y S C G - V C D S C D L L D M P I H V S T H V G E S V I V I V I C L T C L F M S L L M W V S L - - . . . . . . 54825 TGAGAAGATGTAACGGTCTTGCCTTGTGATTTTTGTGGGGAGCAATACTTATGTAGATTT - E D V T V L P C D F C G E Q Y L C R F E K M - R S C L V I F V G S N T Y V D L L R R C N G L A L - F L W G A I L M - I . . . . . . 54885 GATTATTCTAGATATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAA D Y S R Y G - F - C N S G Y D L A F S K I I L D M V D F D V I L G M T W L S P N - L F - I W L I L M - F W V - L G F L Q . . . . . . : 54945 TTTTGAAATCTTAGATTGTAATGCTAAAACTGTTACATTGGCCAAGCCTGGGACAG : ATTC F - N L R L - C - N C Y I G Q A W D R : F F E I L D C N A K T V T L A K P G T : D S I L K S - I V M L K L L H W P S L G Q : I . . . . . . 56128 GCTAGTATGGGAGGGTGACTATATTTCCACTCCCGTTCGTATTATCTCTTGTCTTTGTGC A S M G G - L Y F H S R S Y Y L L S L C L V W E G D Y I S T P V R I I S C L C A R - Y G R V T I F P L P F V L S L V F V . . . . . . 56188 TAAGAGGATGGTGAGTAAGGTTTGTTTATATTTGTTGGCACATCTCACGGATGATACTTC - E D G E - G L F I F V G T S H G - Y F K R M V S K V C L Y L L A H L T D D T S L R G W - V R F V Y I C W H I S R M I L . . : . . . . 56248 CAAAGTACCTTCGATTG : ACCTCTGTTTCGATAGTCTGTGAGTTTCTAGATGTTTTTCCTG Q S T F D - : P L F R - S V S F - M F F L K V P S I : D L C F D S L - V S R C F S C P K Y L R L : T S V S I V C E F L D V F P . . . . . . 56353 CAGACCTTCCTAGTATGCCACTGGATAGGGATATTGATTTTTGTATTGATGTGGAACGGT Q T F L V C H W I G I L I F V L M W N G R P S - Y A T G - G Y - F L Y - C G T V A D L P S M P L D R D I D F C I D V E R . . . . . . 56413 TACTCGCCCCATTTCCATTCCCCCTTATAGAATGGCTCCAGCTGAGTTGAGGGAGTTAAA Y S P H F H S P L - N G S S - V E G V K T R P I S I P P Y R M A P A E L R E L K L L A P F P F P L I E W L Q L S - G S - . . . . . . 56473 GGCCCAACTTCAGGAGTTGTTAGGTAAAGGTTTTATTAGACCGAGTGCAGCACCTTGGGG G P T S G V V R - R F Y - T E C S T L G A Q L Q E L L G K G F I R P S A A P W G R P N F R S C - V K V L L D R V Q H L G . . . . . 56533 TGCTCTGGTTTTATTTGTGAAGAAGAAAGATGAAAGTTTTCG C S G F I C E E E R - K F S A L V L F V K K K D E S F V L W F Y L - R R K M K V F Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0047I13.1+_PGL-10_AGS-4_PPS_1 (54838 55000,56124 56264,56310 56332) (frame '2'; 324 bp, 108 residues) 1 RSCLVIFVGS NTYVDLIILD MVDFDVILGM TWLSPNFEIL DCNAKTVTLA KPGTDSLVWE 61 GDYISTPVRI ISCLCAKRMV SKVCLYLLAH LTDDTSKVPS IDLCFDSL- AGS-5 (54817 55000,56124 56294,56341 56643) SCR (e 0.826 d 0.000 a 0.430,e 0.789 d 0.000 a 0.000,e 0.830) Exon 1 54817 55000 ( 184 n); score: 0.826 Intron 1 55001 56123 (1123 n); Pd: 0.000 Pa: 0.430 Exon 2 56124 56294 ( 171 n); score: 0.789 Intron 2 56295 56340 ( 46 n); Pd: 0.000 Pa: 0.000 Exon 3 56341 56643 ( 303 n); score: 0.830 PGS (54817 55000,56124 56294,56341 56643) SGN-E355232- 3-phase translation of AGS-5 (+strand): . . . . . . 54817 GTGATAGTTGAGAAGATGTAACGGTCTTGCCTTGTGATTTTTGTGGGGAGCAATACTTAT V I V E K M - R S C L V I F V G S N T Y - - L R R C N G L A L - F L W G A I L M D S - E D V T V L P C D F C G E Q Y L . . . . . . 54877 GTAGATTTGATTATTCTAGATATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTT V D L I I L D M V D F D V I L G M T W L - I - L F - I W L I L M - F W V - L G F C R F D Y S R Y G - F - C N S G Y D L A . . . . . . 54937 TCTCCAAATTTTGAAATCTTAGATTGTAATGCTAAAACTGTTACATTGGCCAAGCCTGGG S P N F E I L D C N A K T V T L A K P G L Q I L K S - I V M L K L L H W P S L G F S K F - N L R L - C - N C Y I G Q A W . : . . . . . 54997 ACAG : ATTCGCTAGTATGGGAGGGTGACTATATTTCCACTCCCGTTCGTATTATCTCTTGT T : D S L V W E G D Y I S T P V R I I S C Q : I R - Y G R V T I F P L P F V L S L V D R : F A S M G G - L Y F H S R S Y Y L L . . . . . . 56180 CTTTGTGCTAAGAGGATGGTGAGTAAGGTTTGTTTATATTTGTTGGCACATCTCACGGAT L C A K R M V S K V C L Y L L A H L T D F V L R G W - V R F V Y I C W H I S R M S L C - E D G E - G L F I F V G T S H G . . . . . . : 56240 GATACTTCCAAAGTACCTTCGATTGAGTCTGTTTCGATAGTCCGTGAGTTTCTAG : ATGTT D T S K V P S I E S V S I V R E F L : D V I L P K Y L R L S L F R - S V S F - : M F - Y F Q S T F D - V C F D S P - V S R : C . . . . . . 56346 TTTCCTGCAGACCTTCCTAGTATGCCACTGGATAGGGATATTGATTTTTGTATTGATGTG F P A D L P S M P L D R D I D F C I D V F L Q T F L V C H W I G I L I F V L M W F S C R P S - Y A T G - G Y - F L Y - C . . . . . . 56406 GAACGGTTACTCGCCCCATTTCCATTCCCCCTTATAGAATGGCTCCAGCTGAGTTGAGGG E R L L A P F P F P L I E W L Q L S - G N G Y S P H F H S P L - N G S S - V E G G T V T R P I S I P P Y R M A P A E L R . . . . . . 56466 AGTTAAAGGCCCAACTTCAGGAGTTGTTAGGTAAAGGTTTTATTAGACCGAGTGCAGCAC S - R P N F R S C - V K V L L D R V Q H V K G P T S G V V R - R F Y - T E C S T E L K A Q L Q E L L G K G F I R P S A A . . . . . . 56526 CTTGGGGTGCTCTGGTTTTATTTGTGAAGAAGAAAGATGAAAGTTTTCGGATGTGCATAG L G V L W F Y L - R R K M K V F G C A - L G C S G F I C E E E R - K F S D V H R P W G A L V L F V K K K D E S F R M C I . . . . . . 56586 AATACAGGCAGCTGAATAAGGTAACTCTTAAGAACAAGTATCTCATTCCTTGCATTGA N T G S - I R - L L R T S I S F L A L I Q A A E - G N S - E Q V S H S L H - E Y R Q L N K V T L K N K Y L I P C I Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0047I13.1+_PGL-10_AGS-5_PPS_1 (54838 55000,56124 56294,56341 56462) (frame '1'; 453 bp, 151 residues) 1 RSCLVIFVGS NTYVDLIILD MVDFDVILGM TWLSPNFEIL DCNAKTVTLA KPGTDSLVWE 61 GDYISTPVRI ISCLCAKRMV SKVCLYLLAH LTDDTSKVPS IESVSIVREF LDVFPADLPS 121 MPLDRDIDFC IDVERLLAPF PFPLIEWLQL S- AGS-6 (57390 58167) SCR (e 0.849) Exon 1 57390 58167 ( 778 n); score: 0.849 PGS (57390 57975) SGN-E352950- PGS (57390 57975) SGN-E357100- PGS (57423 57975) SGN-E352647- PGS (57879 58167) SGN-E353207- 3-phase translation of AGS-6 (+strand): . . . . . . 57390 GCAATTGAAAGTGCATGAACATAACTATCCAACCCATGATTTGGATTTGGCTGCAGTTGT A I E S A - T - L S N P - F G F G C S C Q L K V H E H N Y P T H D L D L A A V V N - K C M N I T I Q P M I W I W L Q L . . . . . . 57450 ATTTGCATTAAAGCAATGGAGACATTATCTATATGGGGTCAAGTGTGAAGTCTATACAGA I C I K A M E T L S I W G Q V - S L Y R F A L K Q W R H Y L Y G V K C E V Y T D Y L H - S N G D I I Y M G S S V K S I Q . . . . . . 57510 TCATCGTAGTTTACCATATGTCTTTACTCAGAAAGATTTGAATTTGAGGCGGAGGAGGTG S S - F T I C L Y S E R F E F E A E E V H R S L P Y V F T Q K D L N L R R R R W I I V V Y H M S L L R K I - I - G G G G . . . . . . 57570 GATGGAACTATTGAAAGATAATGATATTACTATTTTGTATCACCTAGGAAAAGCTAATGT D G T I E R - - Y Y Y F V S P R K S - C M E L L K D N D I T I L Y H L G K A N V G W N Y - K I M I L L F C I T - E K L M . . . . . . 57630 TGTGGCAGATGCTTTAAGTAGAAAAGTAGGGAGCATGGGTAGTTTAGCCCACTCACAGGT C G R C F K - K S R E H G - F S P L T G V A D A L S R K V G S M G S L A H S Q V L W Q M L - V E K - G A W V V - P T H R . . . . . . 57690 TTCTAGACGCCCATTGGCTAGAGAAGTTCAAACTCTGGCTAATGACTTTATGAGGTTGGA F - T P I G - R S S N S G - - L Y E V G S R R P L A R E V Q T L A N D F M R L E F L D A H W L E K F K L W L M T L - G W . . . . . . 57750 AGTACTAGAGAAAGGAGGATTTTTTGCTTGTGTGGAGGCAAGATCTTCTTTTCTTGAAAA S T R E R R I F C L C G G K I F F S - K V L E K G G F F A C V E A R S S F L E K K Y - R K E D F L L V W R Q D L L F L K . . . . . . 57810 GATTAAGGGAAATCAGTTTGATGATGAGAAGCTGAGACGAATTTGAGATATGGTATTGCG D - G K S V - - - E A E T N L R Y G I A I K G N Q F D D E K L R R I - D M V L R R L R E I S L M M R S - D E F E I W Y C . . . . . . 57870 AGGAGAGGCAAAGAGGCAGTAATTGATGAAGAAGGCATCTTGATGATTAAGGAAAGGGTA R R G K E A V I D E E G I L M I K E R V G E A K R Q - L M K K A S - - L R K G Y E E R Q R G S N - - R R H L D D - G K G . . . . . . 57930 TGTGTGCCCCGTGTGGATGATTTGATTCACACTATTCTTGCAGAGGCTCATAGTTCAAGG C V P R V D D L I H T I L A E A H S S R V C P V W M I - F T L F L Q R L I V Q G M C A P C G - F D S H Y S C R G S - F K . . . . . . 57990 TATTCTATACATCCTGGTGCAACCAAGATGTATCATGATCTAAAGCAACATTTTTTGTGG Y S I H P G A T K M Y H D L K Q H F L W I L Y I L V Q P R C I M I - S N I F C G V F Y T S W C N Q D V S - S K A T F F V . . . . . . 58050 AGTAGAATGCAGCATGATATTGTTGATTTTGTTGCCCAATGCCCGAATTGTCAGCAGGTA S R M Q H D I V D F V A Q C P N C Q Q V V E C S M I L L I L L P N A R I V S R - E - N A A - Y C - F C C P M P E L S A G . . . . . . 58110 AAGTATGAACACCAGAGGCCCGGAGGGACACTTAAGAGAATGCCCTTTCTAGAATTGG K Y E H Q R P G G T L K R M P F L E L S M N T R G P E G H L R E C P F - N W K V - T P E A R R D T - E N A L S R I Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0047I13.1+_PGL-10_AGS-6_PPS_1 (57391 57855) (frame '2'; 462 bp, 154 residues) 1 QLKVHEHNYP THDLDLAAVV FALKQWRHYL YGVKCEVYTD HRSLPYVFTQ KDLNLRRRRW 61 MELLKDNDIT ILYHLGKANV VADALSRKVG SMGSLAHSQV SRRPLAREVQ TLANDFMRLE 121 VLEKGGFFAC VEARSSFLEK IKGNQFDDEK LRRI- >C09HBa0047I13.1+_PGL-10_AGS-6_PPS_2 (57837 58166) (frame '1'; 330 bp, 110 residues) 1 EAETNLRYGI ARRGKEAVID EEGILMIKER VCVPRVDDLI HTILAEAHSS RYSIHPGATK 61 MYHDLKQHFL WSRMQHDIVD FVAQCPNCQQ VKYEHQRPGG TLKRMPFLEL 3-phase translation of AGS-6 (-strand): . . . . . . 58167 CCAATTCTAGAAAGGGCATTCTCTTAAGTGTCCCTCCGGGCCTCTGGTGTTCATACTTTA P I L E R A F S - V S L R A S G V H T L Q F - K G H S L K C P S G P L V F I L Y N S R K G I L L S V P P G L W C S Y F . . . . . . 58107 CCTGCTGACAATTCGGGCATTGGGCAACAAAATCAACAATATCATGCTGCATTCTACTCC P A D N S G I G Q Q N Q Q Y H A A F Y S L L T I R A L G N K I N N I M L H S T P T C - Q F G H W A T K S T I S C C I L L . . . . . . 58047 ACAAAAAATGTTGCTTTAGATCATGATACATCTTGGTTGCACCAGGATGTATAGAATACC T K N V A L D H D T S W L H Q D V - N T Q K M L L - I M I H L G C T R M Y R I P H K K C C F R S - Y I L V A P G C I E Y . . . . . . 57987 TTGAACTATGAGCCTCTGCAAGAATAGTGTGAATCAAATCATCCACACGGGGCACACATA L N Y E P L Q E - C E S N H P H G A H I - T M S L C K N S V N Q I I H T G H T Y L E L - A S A R I V - I K S S T R G T H . . . . . . 57927 CCCTTTCCTTAATCATCAAGATGCCTTCTTCATCAATTACTGCCTCTTTGCCTCTCCTCG P F P - S S R C L L H Q L L P L C L S S P F L N H Q D A F F I N Y C L F A S P R T L S L I I K M P S S S I T A S L P L L . . . . . . 57867 CAATACCATATCTCAAATTCGTCTCAGCTTCTCATCATCAAACTGATTTCCCTTAATCTT Q Y H I S N S S Q L L I I K L I S L N L N T I S Q I R L S F S S S N - F P L I F A I P Y L K F V S A S H H Q T D F P - S . . . . . . 57807 TTCAAGAAAAGAAGATCTTGCCTCCACACAAGCAAAAAATCCTCCTTTCTCTAGTACTTC F K K R R S C L H T S K K S S F L - Y F S R K E D L A S T Q A K N P P F S S T S F Q E K K I L P P H K Q K I L L S L V L . . . . . . 57747 CAACCTCATAAAGTCATTAGCCAGAGTTTGAACTTCTCTAGCCAATGGGCGTCTAGAAAC Q P H K V I S Q S L N F S S Q W A S R N N L I K S L A R V - T S L A N G R L E T P T S - S H - P E F E L L - P M G V - K . . . . . . 57687 CTGTGAGTGGGCTAAACTACCCATGCTCCCTACTTTTCTACTTAAAGCATCTGCCACAAC L - V G - T T H A P Y F S T - S I C H N C E W A K L P M L P T F L L K A S A T T P V S G L N Y P C S L L F Y L K H L P Q . . . . . . 57627 ATTAGCTTTTCCTAGGTGATACAAAATAGTAATATCATTATCTTTCAATAGTTCCATCCA I S F S - V I Q N S N I I I F Q - F H P L A F P R - Y K I V I S L S F N S S I H H - L F L G D T K - - Y H Y L S I V P S . . . . . . 57567 CCTCCTCCGCCTCAAATTCAAATCTTTCTGAGTAAAGACATATGGTAAACTACGATGATC P P P P Q I Q I F L S K D I W - T T M I L L R L K F K S F - V K T Y G K L R - S T S S A S N S N L S E - R H M V N Y D D . . . . . . 57507 TGTATAGACTTCACACTTGACCCCATATAGATAATGTCTCCATTGCTTTAATGCAAATAC C I D F T L D P I - I M S P L L - C K Y V - T S H L T P Y R - C L H C F N A N T L Y R L H T - P H I D N V S I A L M Q I . . . . . . 57447 AACTGCAGCCAAATCCAAATCATGGGTTGGATAGTTATGTTCATGCACTTTCAATTGC N C S Q I Q I M G W I V M F M H F Q L T A A K S K S W V G - L C S C T F N C Q L Q P N P N H G L D S Y V H A L S I Maximal non-overlapping open reading frames (>= 64 codons): none PGL 11 (+ strand): 59601 59867 AGS-1 (59601 59867) SCR (e 0.801) Exon 1 59601 59867 ( 267 n); score: 0.801 PGS (59601 59867) SGN-E540411+ 3-phase translation of AGS-1 (+strand): . . . . . . 59601 TCCCCCCACAAACCTATACCCGAAATCCCAGAGACACACTTATACTATACTAAGATCATA S P H K P I P E I P E T H L Y Y T K I I P P T N L Y P K S Q R H T Y T I L R S Y P P Q T Y T R N P R D T L I L Y - D H . . . . . . 59661 TTACCCCTGAACTTATTTTATGAATAATTTTCTACCCCTTTTCGGCCTACGTGGCACTAG L P L N L F Y E - F S T P F R P T W H - Y P - T Y F M N N F L P L F G L R G T S I T P E L I L - I I F Y P F S A Y V A L . . . . . . 59721 CTTGGGAAAGAATGTCAACACTTTCTGGGCCCACAAGATACTGCCACGTAGGCTGAAAAG L G K E C Q H F L G P Q D T A T - A E K L G K N V N T F W A H K I L P R R L K R A W E R M S T L S G P T R Y C H V G - K . . . . . . 59781 GGTAAAAAATTATTTATAAAATAATTTCAAGGGGGTAATAGGACCATAGTGTAGAATAAG G K K L F I K - F Q G G N R T I V - N K V K N Y L - N N F K G V I G P - C R I S G - K I I Y K I I S R G - - D H S V E - . . . 59841 TGTGTCTCTGATATTTGGAGGAGGGAG C V S D I W R R E V S L I F G G G V C L - Y L E E G Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 59867 CTCCCTCCTCCAAATATCAGAGACACACTTATTCTACACTATGGTCCTATTACCCCCTTG L P P P N I R D T L I L H Y G P I T P L S L L Q I S E T H L F Y T M V L L P P - P S S K Y Q R H T Y S T L W S Y Y P L . . . . . . 59807 AAATTATTTTATAAATAATTTTTTACCCTTTTCAGCCTACGTGGCAGTATCTTGTGGGCC K L F Y K - F F T L F S L R G S I L W A N Y F I N N F L P F S A Y V A V S C G P E I I L - I I F Y P F Q P T W Q Y L V G . . . . . . 59747 CAGAAAGTGTTGACATTCTTTCCCAAGCTAGTGCCACGTAGGCCGAAAAGGGGTAGAAAA Q K V L T F F P K L V P R R P K R G R K R K C - H S F P S - C H V G R K G V E N P E S V D I L S Q A S A T - A E K G - K . . . . . . 59687 TTATTCATAAAATAAGTTCAGGGGTAATATGATCTTAGTATAGTATAAGTGTGTCTCTGG L F I K - V Q G - Y D L S I V - V C L W Y S - N K F R G N M I L V - Y K C V S G I I H K I S S G V I - S - Y S I S V S L . . . 59627 GATTTCGGGTATAGGTTTGTGGGGGGA D F G Y R F V G G I S G I G L W G G F R V - V C G G Maximal non-overlapping open reading frames (>= 64 codons): none PGL 12 (- strand): 71064 70316 AGS-1 (71064 70906,70692 70657,70624 70316) SCR (e 0.839 d 0.670 a 0.000,e 0.917 d 0.000 a 0.000,e 0.830) Exon 1 71064 70906 ( 159 n); score: 0.839 Intron 1 70905 70693 ( 213 n); Pd: 0.670 Pa: 0.000 Exon 2 70692 70657 ( 36 n); score: 0.917 Intron 2 70656 70625 ( 32 n); Pd: 0.000 Pa: 0.000 Exon 3 70624 70316 ( 309 n); score: 0.830 PGS (70923 70906,70692 70657,70624 70316) SGN-E394141- PGS (70626 70316) SGN-E392605- PGS (71064 70897) SGN-E379333- PGS (71058 70897) SGN-E200682- PGS (71038 70907) SGN-E371327- PGS (71053 70989) SGN-E378080- 3-phase translation of AGS-1 (-strand): . . . . . . 71064 TTATGAATAAATTATTAAGGGAAATTTTCACATATAGAAAATAAAAAATTCATATTTGTA L - I N Y - G K F S H I E N K K F I F V Y E - I I K G N F H I - K I K N S Y L Y M N K L L R E I F T Y R K - K I H I C . . . . . . 71004 TGCTATAGCAAAGTTTATAGCAAAGTTTGCATAATTGCGCTCCATAGCAAACATAAAACT C Y S K V Y S K V C I I A L H S K H K T A I A K F I A K F A - L R S I A N I K L M L - Q S L - Q S L H N C A P - Q T - N . . . . : . . 70944 GTATAATTCGCTATACATATACAATTGTATAATTCACTG : TTGTATAATTCGTTGGCCTTT V - F A I H I Q L Y N S L : L Y N S L A F Y N S L Y I Y N C I I H C : C I I R W P F C I I R Y T Y T I V - F T : V V - F V G L . . : . . . . 70671 TTCGCTGCAATAATT : GAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAA F A A I I : E V K C L - I V - L S V - H E S L Q - L : K - N V C K L Y N - V Y N T K F R C N N : - S K M F V N C I I K C I T R . . . . . . 70579 GATATATATTTTTGCATGTATATATACAATTTTCTCTCGCTTTTTACAAAACAGAACATA D I Y F C M Y I Y N F L S L F T K Q N I I Y I F A C I Y T I F S R F L Q N R T - R Y I F L H V Y I Q F S L A F Y K T E H . . . . . . 70519 ATTTATACACTTCTGTGTATAAAAGCGAGAGAGGCGAACAGAGGGAGAGTGGCGAGCGAG I Y T L L C I K A R E A N R G R V A S E F I H F C V - K R E R R T E G E W R A R N L Y T S V Y K S E R G E Q R E S G E R . . . . . . 70459 AATGGGAGAGTGGTGAGCGAGATTTTTGGAGAGAGGCGACTGACAAACTTTGGGTAATGT N G R V V S E I F G E R R L T N F G - C M G E W - A R F L E R G D - Q T L G N V E W E S G E R D F W R E A T D K L W V M . . . . . . 70399 TTTCTACGGAACACAATTAAATCAAACCGTAGCAACTCCATTTGTTTTAGGTTATTAGTT F L R N T I K S N R S N S I C F R L L V F Y G T Q L N Q T V A T P F V L G Y - F F S T E H N - I K P - Q L H L F - V I S . . . 70339 TGCTATTATATATAATTATCCCAA C Y Y I - L S Q A I I Y N Y P L L L Y I I I P Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0047I13.1-_PGL-12_AGS-1_PPS_1 (70622 70380) (frame '0'; 240 bp, 80 residues) 1 SKMFVNCIIK CITRRYIFLH VYIQFSLAFY KTEHNLYTSV YKSERGEQRE SGEREWESGE 61 RDFWREATDK LWVMFSTEHN - AGS-2 (70945 70316) SCR (e 0.817) Exon 1 70945 70316 ( 630 n); score: 0.817 PGS (70828 70316) SGN-E394609+ PGS (70828 70316) SGN-E379112- PGS (70827 70317) SGN-E379618+ PGS (70828 70323) SGN-E393065+ PGS (70827 70459) SGN-E200845+ PGS (70828 70487) SGN-E393076+ PGS (70828 70524) SGN-E393075+ PGS (70945 70682) SGN-E379427- 3-phase translation of AGS-2 (-strand): . . . . . . 70945 TGTATAATTCGCTATACATATACAATTGTATAATTCACTGGCCTAAATTGTATAATTCGC C I I R Y T Y T I V - F T G L N C I I R V - F A I H I Q L Y N S L A - I V - F A Y N S L Y I Y N C I I H W P K L Y N S . . . . . . 70885 TTCCTATTTCGCTGCAATATTTCTATAAAATTTGCTTTGCATACAATTGAATCGAATTAA F L F R C N I S I K F A L H T I E S N - S Y F A A I F L - N L L C I Q L N R I K L P I S L Q Y F Y K I C F A Y N - I E L . . . . . . 70825 AATGTATGTATATTCCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCTCGC N V C I F H N Y K C I A R R Y M F F S R M Y V Y S I I I S V - Q E D I C F S L A K C M Y I P - L - V Y S K K I Y V F L S . . . . . . 70765 TTTATACAAAAACAGAAACACAATATTTACACTTCTGTTGTATAAAGCGAGAGAAAATCG F I Q K Q K H N I Y T S V V - S E R K S L Y K N R N T I F T L L L Y K A R E N R L Y T K T E T Q Y L H F C C I K R E K I . . . . . . 70705 TATTTCATTGCAATTGTATAATTCGTTGGCCTTTTTCGCTGCAATAATTGTATAAAATTT Y F I A I V - F V G L F R C N N C I K F I S L Q L Y N S L A F F A A I I V - N L V F H C N C I I R W P F S L Q - L Y K I . . . . . . 70645 GCATTTGTCTACAATTGAATTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAA A F V Y N - I E V K C L - I V - L S V - H L S T I E L K - N V C K L Y N - V Y N C I C L Q L N - S K M F V N C I I K C I . . . . . . 70585 CACGAAGATATATATTTTTGCATGTATATATACAATTTTCTCTCGCTTTTTACAAAACAG H E D I Y F C M Y I Y N F L S L F T K Q T K I Y I F A C I Y T I F S R F L Q N R T R R Y I F L H V Y I Q F S L A F Y K T . . . . . . 70525 AACATAATTTATACACTTCTGTGTATAAAAGCGAGAGAGGCGAACAGAGGGAGAGTGGCG N I I Y T L L C I K A R E A N R G R V A T - F I H F C V - K R E R R T E G E W R E H N L Y T S V Y K S E R G E Q R E S G . . . . . . 70465 AGCGAGAATGGGAGAGTGGTGAGCGAGATTTTTGGAGAGAGGCGACTGACAAACTTTGGG S E N G R V V S E I F G E R R L T N F G A R M G E W - A R F L E R G D - Q T L G E R E W E S G E R D F W R E A T D K L W . . . . . . 70405 TAATGTTTTCTACGGAACACAATTAAATCAAACCGTAGCAACTCCATTTGTTTTAGGTTA - C F L R N T I K S N R S N S I C F R L N V F Y G T Q L N Q T V A T P F V L G Y V M F S T E H N - I K P - Q L H L F - V . . . 70345 TTAGTTTGCTATTATATATAATTATCCCAA L V C Y Y I - L S Q - F A I I Y N Y P I S L L L Y I I I P Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0047I13.1-_PGL-12_AGS-2_PPS_1 (70622 70380) (frame '0'; 240 bp, 80 residues) 1 SKMFVNCIIK CITRRYIFLH VYIQFSLAFY KTEHNLYTSV YKSERGEQRE SGEREWESGE 61 RDFWREATDK LWVMFSTEHN - 3-phase translation of AGS-2 (+strand): . . . . . . 70316 TTGGGATAATTATATATAATAGCAAACTAATAACCTAAAACAAATGGAGTTGCTACGGTT L G - L Y I I A N - - P K T N G V A T V W D N Y I - - Q T N N L K Q M E L L R F G I I I Y N S K L I T - N K W S C Y G . . . . . . 70376 TGATTTAATTGTGTTCCGTAGAAAACATTACCCAAAGTTTGTCAGTCGCCTCTCTCCAAA - F N C V P - K T L P K V C Q S P L S K D L I V F R R K H Y P K F V S R L S P K L I - L C S V E N I T Q S L S V A S L Q . . . . . . 70436 AATCTCGCTCACCACTCTCCCATTCTCGCTCGCCACTCTCCCTCTGTTCGCCTCTCTCGC N L A H H S P I L A R H S P S V R L S R I S L T T L P F S L A T L P L F A S L A K S R S P L S H S R S P L S L C S P L S . . . . . . 70496 TTTTATACACAGAAGTGTATAAATTATGTTCTGTTTTGTAAAAAGCGAGAGAAAATTGTA F Y T Q K C I N Y V L F C K K R E K I V F I H R S V - I M F C F V K S E R K L Y L L Y T E V Y K L C S V L - K A R E N C . . . . . . 70556 TATATACATGCAAAAATATATATCTTCGTGTTATACACTTAATTATACAATTTACAAACA Y I H A K I Y I F V L Y T - L Y N L Q T I Y M Q K Y I S S C Y T L N Y T I Y K H I Y T C K N I Y L R V I H L I I Q F T N . . . . . . 70616 TTTTACTTCAATTCAATTGTAGACAAATGCAAATTTTATACAATTATTGCAGCGAAAAAG F Y F N S I V D K C K F Y T I I A A K K F T S I Q L - T N A N F I Q L L Q R K R I L L Q F N C R Q M Q I L Y N Y C S E K . . . . . . 70676 GCCAACGAATTATACAATTGCAATGAAATACGATTTTCTCTCGCTTTATACAACAGAAGT A N E L Y N C N E I R F S L A L Y N R S P T N Y T I A M K Y D F L S L Y T T E V G Q R I I Q L Q - N T I F S R F I Q Q K . . . . . . 70736 GTAAATATTGTGTTTCTGTTTTTGTATAAAGCGAGAGAAAAACATATATCTTCTTGCTAT V N I V F L F L Y K A R E K H I S S C Y - I L C F C F C I K R E K N I Y L L A I C K Y C V S V F V - S E R K T Y I F L L . . . . . . 70796 ACACTTATAATTATGGAATATACATACATTTTAATTCGATTCAATTGTATGCAAAGCAAA T L I I M E Y T Y I L I R F N C M Q S K H L - L W N I H T F - F D S I V C K A N Y T Y N Y G I Y I H F N S I Q L Y A K Q . . . . . . 70856 TTTTATAGAAATATTGCAGCGAAATAGGAAGCGAATTATACAATTTAGGCCAGTGAATTA F Y R N I A A K - E A N Y T I - A S E L F I E I L Q R N R K R I I Q F R P V N Y I L - K Y C S E I G S E L Y N L G Q - I . . . 70916 TACAATTGTATATGTATAGCGAATTATACA Y N C I C I A N Y T T I V Y V - R I I I Q L Y M Y S E L Y Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0047I13.1+_PGL-12_AGS-2_PPS_1 (70598 70882) (frame '1'; 282 bp, 94 residues) 1 LYNLQTFYFN SIVDKCKFYT IIAAKKANEL YNCNEIRFSL ALYNRSVNIV FLFLYKAREK 61 HISSCYTLII MEYTYILIRF NCMQSKFYRN IAAK- >C09HBa0047I13.1+_PGL-12_AGS-2_PPS_2 (70397 70597) (frame '1'; 198 bp, 66 residues) 1 KTLPKVCQSP LSKNLAHHSP ILARHSPSVR LSRFYTQKCI NYVLFCKKRE KIVYIHAKIY 61 IFVLYT- AGS-3 (71061 70967,70930 70850,70709 70567) SCR (e 0.732 d 0.000 a 0.000,e 0.809 d 0.000 a 0.000,e 0.797) Exon 1 71061 70967 ( 95 n); score: 0.732 Intron 1 70966 70931 ( 36 n); Pd: 0.000 Pa: 0.000 Exon 2 70930 70850 ( 81 n); score: 0.809 Intron 2 70849 70710 ( 140 n); Pd: 0.000 Pa: 0.000 Exon 3 70709 70567 ( 143 n); score: 0.797 PGS (71061 70967,70930 70850,70709 70567) SGN-E578389- 3-phase translation of AGS-3 (-strand): . . . . . . 71061 TGAATAAATTATTAAGGGAAATTTTCACATATAGAAAATAAAAAATTCATATTTGTATGC - I N Y - G K F S H I E N K K F I F V C E - I I K G N F H I - K I K N S Y L Y A N K L L R E I F T Y R K - K I H I C M . . . . : . . 71001 TATAGCAAAGTTTATAGCAAAGTTTGCATAATTGC : ACATATACAATTGTATAATTCACTG Y S K V Y S K V C I I A : H I Q L Y N S L I A K F I A K F A - L : H I Y N C I I H W L - Q S L - Q S L H N C : T Y T I V - F T . . . . . . : 70905 GCCTAAATTGTATAATTCGCTTCCTATTTCGCTGCAATATTTCTATAAAATTTGCT : ATCG A - I V - F A S Y F A A I F L - N L L : S P K L Y N S L P I S L Q Y F Y K I C : Y R G L N C I I R F L F R C N I S I K F A : I . . . . . . 70705 TATTTCATTGCAATTGTATAATTCGTTGGCCTTTTTCGCTGCAATAATTGTATAAAATTT Y F I A I V - F V G L F R C N N C I K F I S L Q L Y N S L A F F A A I I V - N L V F H C N C I I R W P F S L Q - L Y K I . . . . . . 70645 GCATTTGTCTACAATTGAATTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAA A F V Y N - I E V K C L - I V - L S V - H L S T I E L K - N V C K L Y N - V Y N C I C L Q L N - S K M F V N C I I K C I . . 70585 CACGAAGATATATATTTTT H E D I Y F T K I Y I F T R R Y I F Maximal non-overlapping open reading frames (>= 64 codons): none PGL 13 (+ strand): 84600 85704 AGS-1 (84600 84675,84706 84973) SCR (e 0.928 d 0.106 a 0.000,e 0.836) Exon 1 84600 84675 ( 76 n); score: 0.928 Intron 1 84676 84705 ( 30 n); Pd: 0.106 Pa: 0.000 Exon 2 84706 84973 ( 268 n); score: 0.836 PGS (84600 84675,84706 84973) SGN-E390063+ PGS (84600 84675,84706 84973) SGN-E550374+ 3-phase translation of AGS-1 (+strand): . . . . . . 84600 GAATTATAAACTCTAATTCCTTCTACTCAACACAAAAAACTACTCCCTAGTTTTCTATCT E L - T L I P S T Q H K K L L P S F L S N Y K L - F L L L N T K N Y S L V F Y L I I N S N S F Y S T Q K T T P - F S I . . : . . . . 84660 TTTCAATGCTTTTCAA : CCAGATTGTAAACAAGACTCTTGAATACAATCTTACAACTTTTT F Q C F S : T R L - T R L L N T I L Q L F F N A F Q : P D C K Q D S - I Q S Y N F F F S M L F N : Q I V N K T L E Y N L T T F . . . . . . 84750 CACTCAACTTGCAACACTCAAAAGTGTTTATCAAAACTCTCTCAAACCTCTTGATTATGT H S T C N T Q K C L S K L S Q T S - L C T Q L A T L K S V Y Q N S L K P L D Y V S L N L Q H S K V F I K T L S N L L I M . . . . . . 84810 TCTGAACTCCTCTCTTTGTAAGTGCGCAATTTTTTCTGATCCAAATAGCTCCCTATTTAT S E L L S L - V R N F F - S K - L P I Y L N S S L C K C A I F S D P N S S L F I F - T P L F V S A Q F F L I Q I A P Y L . . . . . . 84870 AAATCAGAAATTCAATCAATCCTTGTACAAATCAACTTGTATTTGTCTTCTACAAATCCT K S E I Q S I L V Q I N L Y L S S T N P N Q K F N Q S L Y K S T C I C L L Q I L - I R N S I N P C T N Q L V F V F Y K S . . . . . 84930 TGTTGACTTCTACTTGGACTTTAATCAAAACCTTATTGCACTCA C - L L L G L - S K P Y C T V D F Y L D F N Q N L I A L L L T S T W T L I K T L L H S Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0047I13.1+_PGL-13_AGS-1_PPS_1 (84730 84972) (frame '2'; 243 bp, 81 residues) 1 IQSYNFFTQL ATLKSVYQNS LKPLDYVLNS SLCKCAIFSD PNSSLFINQK FNQSLYKSTC 61 ICLLQILVDF YLDFNQNLIA L AGS-2 (84992 85704) SCR (e 0.800) Exon 1 84992 85704 ( 713 n); score: 0.800 PGS (84992 85704) SGN-E389937- PGS (85016 85704) SGN-E550463- 3-phase translation of AGS-2 (+strand): . . . . . . 84992 CATACACGCTGCAGTATTTCATTGGAACATGTTGCGTTACCTGTTCAATACAATTTTGCC H T R C S I S L E H V A L P V Q Y N F A I H A A V F H W N M L R Y L F N T I L P Y T L Q Y F I G T C C V T C S I Q F C . . . . . . 85052 ATTTTCAAAATCTCAAGATTAACAAATTCCCCCTTTTTGACTATGGTAAATAATCAATTT I F K I S R L T N S P F L T M V N N Q F F S K S Q D - Q I P P F - L W - I I N L H F Q N L K I N K F P L F D Y G K - S I . . . . . . 85112 GCATTTGAATTTGAATAGGTACACAACATATCAATATATAGAACACTTTATATCATCTGC A F E F E - V H N I S I Y R T L Y I I C H L N L N R Y T T Y Q Y I E H F I S S A C I - I - I G T Q H I N I - N T L Y H L . . . . . . 85172 AGGCTACTTTCCCCTTTTGCCATTAGCCAAAAATTGAAAACCAAAGTACATATGCATACA R L L S P F A I S Q K L K T K V H M H T G Y F P L L P L A K N - K P K Y I C I Q Q A T F P F C H - P K I E N Q S T Y A Y . . . . . . 85232 AAAATAGAGCATCAGACATAGTCATTAGTTACATCTAGAGTTAGACATAAAACCAATATA K I E H Q T - S L V T S R V R H K T N I K - S I R H S H - L H L E L D I K P I Y K N R A S D I V I S Y I - S - T - N Q Y . . . . . . 85292 CATACTATTTACTTCAGTCTTAACTAGTCAAGAACAAAAATTATAAGACAATGCATATAG H T I Y F S L N - S R T K I I R Q C I - I L F T S V L T S Q E Q K L - D N A Y R T Y Y L L Q S - L V K N K N Y K T M H I . . . . . . 85352 AAATGATAGATTAAGCAGAGGGTGCCACAGAGGTGGAAGAGGTTGAGGATCCCTTAGTTA K - - I K Q R V P Q R W K R L R I P - L N D R L S R G C H R G G R G - G S L S - E M I D - A E G A T E V E E V E D P L V . . . . . . 85412 GCAAACCCATGAAACTTTGTAGATGCCCAGAATTCACTTCTCTTTCGTGATGTAACATAG A N P - N F V D A Q N S L L F R D V T - Q T H E T L - M P R I H F S F V M - H S S K P M K L C R C P E F T S L S - C N I . . . . . . 85472 CCTTAGTCTGAGTGAGTTCTTCTTTAATCCTACAGTTCTCAGCAATCAATTCCTCTCGTT P - S E - V L L - S Y S S Q Q S I P L V L S L S E F F F N P T V L S N Q F L S F A L V - V S S S L I L Q F S A I N S S R . . . . . . 85532 CCAACTTATGAGCAAGCTGAATCTATTCCATCTCTACTGAGTGAGCCATTTTTAATGCCT P T Y E Q A E S I P S L L S E P F L M P Q L M S K L N L F H L Y - V S H F - C L S N L - A S - I Y S I S T E - A I F N A . . . . . . 85592 CCATCTCCTCTTCTATAGCAGTGAGAGAAGCCCTTAACCGTTGAGTTTTTACATCAACCT P S P L L - Q - E K P L T V E F L H Q P H L L F Y S S E R S P - P L S F Y I N L S I S S S I A V R E A L N R - V F T S T . . . . . . 85652 TTTTAGGCGTACCAGGCATGTTCATATAATCCACCTTCCCCATGACATCAGAA F - A Y Q A C S Y N P P S P - H Q F R R T R H V H I I H L P H D I R F L G V P G M F I - S T F P M T S E Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-2 (-strand): . . . . . . 85704 TTCTGATGTCATGGGGAAGGTGGATTATATGAACATGCCTGGTACGCCTAAAAAGGTTGA F - C H G E G G L Y E H A W Y A - K G - S D V M G K V D Y M N M P G T P K K V D L M S W G R W I I - T C L V R L K R L . . . . . . 85644 TGTAAAAACTCAACGGTTAAGGGCTTCTCTCACTGCTATAGAAGAGGAGATGGAGGCATT C K N S T V K G F S H C Y R R G D G G I V K T Q R L R A S L T A I E E E M E A L M - K L N G - G L L S L L - K R R W R H . . . . . . 85584 AAAAATGGCTCACTCAGTAGAGATGGAATAGATTCAGCTTGCTCATAAGTTGGAACGAGA K N G S L S R D G I D S A C S - V G T R K M A H S V E M E - I Q L A H K L E R E - K W L T Q - R W N R F S L L I S W N E . . . . . . 85524 GGAATTGATTGCTGAGAACTGTAGGATTAAAGAAGAACTCACTCAGACTAAGGCTATGTT G I D C - E L - D - R R T H S D - G Y V E L I A E N C R I K E E L T Q T K A M L R N - L L R T V G L K K N S L R L R L C . . . . . . 85464 ACATCACGAAAGAGAAGTGAATTCTGGGCATCTACAAAGTTTCATGGGTTTGCTAACTAA T S R K R S E F W A S T K F H G F A N - H H E R E V N S G H L Q S F M G L L T K Y I T K E K - I L G I Y K V S W V C - L . . . . . . 85404 GGGATCCTCAACCTCTTCCACCTCTGTGGCACCCTCTGCTTAATCTATCATTTCTATATG G I L N L F H L C G T L C L I Y H F Y M G S S T S S T S V A P S A - S I I S I C R D P Q P L P P L W H P L L N L S F L Y . . . . . . 85344 CATTGTCTTATAATTTTTGTTCTTGACTAGTTAAGACTGAAGTAAATAGTATGTATATTG H C L I I F V L D - L R L K - I V C I L I V L - F L F L T S - D - S K - Y V Y W A L S Y N F C S - L V K T E V N S M Y I . . . . . . 85284 GTTTTATGTCTAACTCTAGATGTAACTAATGACTATGTCTGATGCTCTATTTTTGTATGC V L C L T L D V T N D Y V - C S I F V C F Y V - L - M - L M T M S D A L F L Y A G F M S N S R C N - - L C L M L Y F C M . . . . . . 85224 ATATGTACTTTGGTTTTCAATTTTTGGCTAATGGCAAAAGGGGAAAGTAGCCTGCAGATG I C T L V F N F W L M A K G E S S L Q M Y V L W F S I F G - W Q K G K V A C R - H M Y F G F Q F L A N G K R G K - P A D . . . . . . 85164 ATATAAAGTGTTCTATATATTGATATGTTGTGTACCTATTCAAATTCAAATGCAAATTGA I - S V L Y I D M L C T Y S N S N A N - Y K V F Y I L I C C V P I Q I Q M Q I D D I K C S I Y - Y V V Y L F K F K C K L . . . . . . 85104 TTATTTACCATAGTCAAAAAGGGGGAATTTGTTAATCTTGAGATTTTGAAAATGGCAAAA L F T I V K K G E F V N L E I L K M A K Y L P - S K R G N L L I L R F - K W Q N I I Y H S Q K G G I C - S - D F E N G K . . . . . . 85044 TTGTATTGAACAGGTAACGCAACATGTTCCAATGAAATACTGCAGCGTGTATG L Y - T G N A T C S N E I L Q R V C I E Q V T Q H V P M K Y C S V Y I V L N R - R N M F Q - N T A A C M Maximal non-overlapping open reading frames (>= 64 codons): none PGL 14 (+ strand): 90613 91078 AGS-1 (90613 90691,90722 91078) SCR (e 0.929 d 0.205 a 0.000,e 0.846) Exon 1 90613 90691 ( 79 n); score: 0.929 Intron 1 90692 90721 ( 30 n); Pd: 0.205 Pa: 0.000 Exon 2 90722 91078 ( 357 n); score: 0.846 PGS (90613 90691,90722 91078) SGN-E550374+ PGS (90614 90691,90722 91078) SGN-E390063+ 3-phase translation of AGS-1 (+strand): . . . . . . 90613 AAGGAATTATAAACTCTAATTCCTTCTACTCAAGACAAAAAACTACTCCCTACTTTTCTA K E L - T L I P S T Q D K K L L P T F L R N Y K L - F L L L K T K N Y S L L F Y G I I N S N S F Y S R Q K T T P Y F S . . : . . . . 90673 TCTTTTCAATGCTTTTCAA : CCAGATTGTAAACAAGACTCTTGAATACAATCTTACAACTT S F Q C F S : T R L - T R L L N T I L Q L L F N A F Q : P D C K Q D S - I Q S Y N F I F S M L F N : Q I V N K T L E Y N L T T . . . . . . 90763 TTTCACTCAACTCGCAGCACTCAAAAGTGTTTATCAAAACTCTCTTAAACCTCTTGATCG F H S T R S T Q K C L S K L S - T S - S F T Q L A A L K S V Y Q N S L K P L D R F S L N S Q H S K V F I K T L L N L L I . . . . . . 90823 TGTTTTGAACTCCTCTCTTTGTAAGTGCGCAATTTTTTCTGATCCAAATAGCTCCCTATT C F E L L S L - V R N F F - S K - L P I V L N S S L C K C A I F S D P N S S L F V F - T P L F V S A Q F F L I Q I A P Y . . . . . . 90883 TATAAATCAGAAATTCAATCAATCCTTGTACAAATCAACTTGTATTTGTCTTCTACAAAT Y K S E I Q S I L V Q I N L Y L S S T N I N Q K F N Q S L Y K S T C I C L L Q I L - I R N S I N P C T N Q L V F V F Y K . . . . . . 90943 CCTTGTTGACTTCTACTTTGACTTTAATCAAAACCTTATTGCACTCAAATTTGTTTTCAG P C - L L L - L - S K P Y C T Q I C F Q L V D F Y F D F N Q N L I A L K F V F S S L L T S T L T L I K T L L H S N L F S . . . . . . 91003 TAGTTTTCCTTAACCAAGTAAACTAATATAAACAAAAACGTACATATAAGTTTCCATATA - F S L T K - T N I N K N V H I S F H I S F P - P S K L I - T K T Y I - V S I Y V V F L N Q V N - Y K Q K R T Y K F P Y . . 91063 CAACTCGTACGCTGCC Q L V R C N S Y A A T T R T L Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0047I13.1+_PGL-14_AGS-1_PPS_1 (90746 91015) (frame '2'; 267 bp, 89 residues) 1 IQSYNFFTQL AALKSVYQNS LKPLDRVLNS SLCKCAIFSD PNSSLFINQK FNQSLYKSTC 61 ICLLQILVDF YFDFNQNLIA LKFVFSSFP- PGL 15 (+ strand): 91744 92653 AGS-1 (91744 92005,92134 92551,92622 92653) SCR (e 0.805 d 0.000 a 0.000,e 0.801 d 0.000 a 0.000,e 0.719) Exon 1 91744 92005 ( 262 n); score: 0.805 Intron 1 92006 92133 ( 128 n); Pd: 0.000 Pa: 0.000 Exon 2 92134 92551 ( 418 n); score: 0.801 Intron 2 92552 92621 ( 70 n); Pd: 0.000 Pa: 0.000 Exon 3 92622 92653 ( 32 n); score: 0.719 PGS (91744 92005,92134 92551,92622 92653) SGN-E352005- 3-phase translation of AGS-1 (+strand): . . . . . . 91744 TGAAAATTAACTGCAAGCAAAATAAATAAAACAAAAATGTGATTTTATTAATGAATTGTG - K L T A S K I N K T K M - F Y - - I V E N - L Q A K - I K Q K C D F I N E L C K I N C K Q N K - N K N V I L L M N C . . . . . . 91804 TGAGTACAATTCTGTTGTTCTCTTTATTCTTCTCTACTAAGTTTCTCCGTGATTCGAGGT - V Q F C C S L Y S S L L S F S V I R G E Y N S V V L F I L L Y - V S P - F E V V S T I L L F S L F F S T K F L R D S R . . . . . . 91864 CCTTCAGTAGCGTATTTCTCGACTGTAGGATGATGAAGACCTCCCTGAGATGTATTTGAT P S V A Y F S T V G - - R P P - D V F D L Q - R I S R L - D D E D L P E M Y L I S F S S V F L D C R M M K T S L R C I - . . . . . . 91924 CTCCAGAAATGTCGGAAAGCGCTTCGTCGTTGCTAGTTGATCTCCGAGAAGAAATCCGTT L Q K C R K A L R R C - L I S E K K S V S R N V G K R F V V A S - S P R R N P L S P E M S E S A S S L L V D L R E E I R . . . : . . . 91984 GATCAATCCTTTGAAGAGCTAT : TGTCGTTGATGTTGTAGCTTTCTCCAATTTCAAAATGC D Q S F E E L : L S L M L - L S P I S K C I N P L K S Y : C R - C C S F L Q F Q N A - S I L - R A I : V V D V V A F S N F K M . . . . . . 92172 TTGTTGAAGTCTTCCCTCCCTTGAATGTCATGTTCATCACCTATTTATAGTTGTAAGGGG L L K S S L P - M S C S S P I Y S C K G C - S L P S L E C H V H H L F I V V R G L V E V F P P L N V M F I T Y L - L - G . . . . . . 92232 TGGGCAAGGTTGCTTGTGATTGGCCAAAGGATGTCATTTTGACACTTGACGCATTGTGAT W A R L L V I G Q R M S F - H L T H C D G Q G C L - L A K G C H F D T - R I V I V G K V A C D W P K D V I L T L D A L - . . . . . . 92292 TCGTTCTTGCATTTGACAGGGAGTACCACCTCATTTGGACACGTGGCGTCACCTTGTTGG S F L H L T G S T T S F G H V A S P C W R S C I - Q G V P P H L D T W R H L V G F V L A F D R E Y H L I W T R G V T L L . . . . . . 92352 TCTTTGATGTCTAGTCACTATGACATGTGACATGAGTTTGGACTTCAAGGTGAAATGTAC S L M S S H Y D M - H E F G L Q G E M Y L - C L V T M T C D M S L D F K V K C T V F D V - S L - H V T - V W T S R - N V . . . . . . 92412 CTTGGACTTGAATTTAATAAAATAGACTTATTTATTTGTAAAGCCCATTTTCATCATTCA L G L E F N K I D L F I C K A H F H H S L D L N L I K - T Y L F V K P I F I I Q P W T - I - - N R L I Y L - S P F S S F . . . . . . 92472 ACCAAAATAAACATGAATTAAATCCAAATTTTGTATGAATTAAATCCAATAAAATTTGTG T K I N M N - I Q I L Y E L N P I K F V P K - T - I K S K F C M N - I Q - N L C N Q N K H E L N P N F V - I K S N K I C . . : . . . . 92532 TGTCTACAGATGCCCCTTAC : TTTTAGGCGTGTCAACGTGTAGGCTTGTCGAA C L Q M P L T : F R R V N V - A C R V Y R C P L : L L G V S T C R L V E V S T D A P Y : F - A C Q R V G L S Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Tue Aug 29 00:18:56 2006