##gff-version 3
##sequence-region C09SLe0019J03.3 1 44036
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match	16807	17655	0.937	+	0	ID=SGN-E581763_alignment_1;Target=SGN-E581763 1 583 +
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	16807	17192	0.922	+	0	ID=GTH_SGN_E_tom_potato_match_part_1;Target=SGN-E581763 1 396 +;Parent=SGN-E581763_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	17470	17655	0.968	+	0	ID=GTH_SGN_E_tom_potato_match_part_2;Target=SGN-E581763 397 583 +;Parent=SGN-E581763_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match	17055	19695	0.995	+	0	ID=SGN-E269922_alignment_1;Target=SGN-E269922 1 572 +
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	17055	17192	0.986	+	0	ID=GTH_SGN_E_tom_potato_match_part_3;Target=SGN-E269922 1 139 +;Parent=SGN-E269922_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	17470	17673	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_4;Target=SGN-E269922 140 343 +;Parent=SGN-E269922_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	18747	18907	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_5;Target=SGN-E269922 344 504 +;Parent=SGN-E269922_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	19628	19695	0.985	+	0	ID=GTH_SGN_E_tom_potato_match_part_6;Target=SGN-E269922 505 572 +;Parent=SGN-E269922_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match	20617	22823	0.999	+	0	ID=SGN-E553951_alignment_1;Target=SGN-E553951 1 759 +
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	20617	20688	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_7;Target=SGN-E553951 1 72 +;Parent=SGN-E553951_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	21645	21844	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_8;Target=SGN-E553951 73 272 +;Parent=SGN-E553951_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	22222	22356	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_9;Target=SGN-E553951 273 407 +;Parent=SGN-E553951_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	22472	22823	0.997	+	0	ID=GTH_SGN_E_tom_potato_match_part_10;Target=SGN-E553951 408 759 +;Parent=SGN-E553951_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match	20617	22781	0.993	+	0	ID=SGN-E554578_alignment_1;Target=SGN-E554578 1 717 +
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	20617	20688	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_11;Target=SGN-E554578 1 72 +;Parent=SGN-E554578_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	21645	21844	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_12;Target=SGN-E554578 73 272 +;Parent=SGN-E554578_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	22222	22356	0.993	+	0	ID=GTH_SGN_E_tom_potato_match_part_13;Target=SGN-E554578 273 407 +;Parent=SGN-E554578_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	22472	22781	0.987	+	0	ID=GTH_SGN_E_tom_potato_match_part_14;Target=SGN-E554578 408 717 +;Parent=SGN-E554578_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match	23114	23748	0.982	-	0	ID=SGN-E541942_alignment_1;Target=SGN-E541942 1 382 +
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	23653	23748	1.000	-	0	ID=GTH_SGN_E_tom_potato_match_part_15;Target=SGN-E541942 1 96 +;Parent=SGN-E541942_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	23114	23399	0.976	-	0	ID=GTH_SGN_E_tom_potato_match_part_16;Target=SGN-E541942 97 382 +;Parent=SGN-E541942_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match	23114	23747	0.974	-	0	ID=SGN-E300815_alignment_1;Target=SGN-E300815 1 381 +
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	23653	23747	1.000	-	0	ID=GTH_SGN_E_tom_potato_match_part_17;Target=SGN-E300815 1 95 +;Parent=SGN-E300815_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	23114	23399	0.965	-	0	ID=GTH_SGN_E_tom_potato_match_part_18;Target=SGN-E300815 96 381 +;Parent=SGN-E300815_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match	23129	23748	1.000	-	0	ID=SGN-E541940_alignment_1;Target=SGN-E541940 1 367 +
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	23653	23748	1.000	-	0	ID=GTH_SGN_E_tom_potato_match_part_19;Target=SGN-E541940 1 96 +;Parent=SGN-E541940_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	23129	23399	1.000	-	0	ID=GTH_SGN_E_tom_potato_match_part_20;Target=SGN-E541940 97 367 +;Parent=SGN-E541940_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match	25053	27293	0.983	-	0	ID=SGN-E365306_alignment_1;Target=SGN-E365306 28 560 +
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	27226	27293	0.956	-	0	ID=GTH_SGN_E_tom_potato_match_part_21;Target=SGN-E365306 28 96 +;Parent=SGN-E365306_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	26732	26980	0.992	-	0	ID=GTH_SGN_E_tom_potato_match_part_22;Target=SGN-E365306 97 345 +;Parent=SGN-E365306_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	25900	25975	0.987	-	0	ID=GTH_SGN_E_tom_potato_match_part_23;Target=SGN-E365306 346 421 +;Parent=SGN-E365306_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	25053	25191	0.978	-	0	ID=GTH_SGN_E_tom_potato_match_part_24;Target=SGN-E365306 422 560 +;Parent=SGN-E365306_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match	29896	30394	0.992	-	0	ID=SGN-E323811_alignment_1;Target=SGN-E323811 1 499 +
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	29896	30394	0.992	-	0	ID=GTH_SGN_E_tom_potato_match_part_25;Target=SGN-E323811 1 499 +;Parent=SGN-E323811_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match	30747	35130	0.998	+	0	ID=SGN-E551058_alignment_1;Target=SGN-E551058 1 585 +
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	30747	30952	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_26;Target=SGN-E551058 1 206 +;Parent=SGN-E551058_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	31041	31093	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_27;Target=SGN-E551058 207 259 +;Parent=SGN-E551058_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	31677	31777	0.990	+	0	ID=GTH_SGN_E_tom_potato_match_part_28;Target=SGN-E551058 260 360 +;Parent=SGN-E551058_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	34906	35130	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_29;Target=SGN-E551058 361 585 +;Parent=SGN-E551058_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match	30747	35130	0.998	+	0	ID=SGN-E688842_alignment_1;Target=SGN-E688842 1 585 +
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	30747	30952	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_30;Target=SGN-E688842 1 206 +;Parent=SGN-E688842_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	31041	31093	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_31;Target=SGN-E688842 207 259 +;Parent=SGN-E688842_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	31677	31777	0.990	+	0	ID=GTH_SGN_E_tom_potato_match_part_32;Target=SGN-E688842 260 360 +;Parent=SGN-E688842_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	34906	35130	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_33;Target=SGN-E688842 361 585 +;Parent=SGN-E688842_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match	30748	35176	0.998	+	0	ID=SGN-E259767_alignment_1;Target=SGN-E259767 1 630 +
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	30748	30952	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_34;Target=SGN-E259767 1 205 +;Parent=SGN-E259767_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	31041	31093	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_35;Target=SGN-E259767 206 258 +;Parent=SGN-E259767_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	31677	31777	0.990	+	0	ID=GTH_SGN_E_tom_potato_match_part_36;Target=SGN-E259767 259 359 +;Parent=SGN-E259767_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	34906	35176	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_37;Target=SGN-E259767 360 630 +;Parent=SGN-E259767_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match	30775	35145	0.993	+	0	ID=SGN-E369165_alignment_1;Target=SGN-E369165 1 573 +
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	30775	30952	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_38;Target=SGN-E369165 1 178 +;Parent=SGN-E369165_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	31041	31093	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_39;Target=SGN-E369165 179 231 +;Parent=SGN-E369165_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	31677	31777	0.990	+	0	ID=GTH_SGN_E_tom_potato_match_part_40;Target=SGN-E369165 232 332 +;Parent=SGN-E369165_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	34906	35145	0.988	+	0	ID=GTH_SGN_E_tom_potato_match_part_41;Target=SGN-E369165 333 573 +;Parent=SGN-E369165_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match	30775	35114	0.994	+	0	ID=SGN-E242690_alignment_1;Target=SGN-E242690 1 541 +
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	30775	30952	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_42;Target=SGN-E242690 1 178 +;Parent=SGN-E242690_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	31041	31093	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_43;Target=SGN-E242690 179 231 +;Parent=SGN-E242690_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	31677	31777	0.990	+	0	ID=GTH_SGN_E_tom_potato_match_part_44;Target=SGN-E242690 232 332 +;Parent=SGN-E242690_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	34906	35114	0.990	+	0	ID=GTH_SGN_E_tom_potato_match_part_45;Target=SGN-E242690 333 541 +;Parent=SGN-E242690_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match	30775	34965	0.997	+	0	ID=SGN-E240678_alignment_1;Target=SGN-E240678 1 392 +
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	30775	30952	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_46;Target=SGN-E240678 1 178 +;Parent=SGN-E240678_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	31041	31093	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_47;Target=SGN-E240678 179 231 +;Parent=SGN-E240678_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	31677	31777	0.990	+	0	ID=GTH_SGN_E_tom_potato_match_part_48;Target=SGN-E240678 232 332 +;Parent=SGN-E240678_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	34906	34965	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_49;Target=SGN-E240678 333 392 +;Parent=SGN-E240678_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match	30817	35287	0.996	+	0	ID=SGN-E718274_alignment_1;Target=SGN-E718274 15 686 +
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	30817	30952	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_50;Target=SGN-E718274 15 150 +;Parent=SGN-E718274_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	31041	31093	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_51;Target=SGN-E718274 151 203 +;Parent=SGN-E718274_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	31677	31777	0.990	+	0	ID=GTH_SGN_E_tom_potato_match_part_52;Target=SGN-E718274 204 304 +;Parent=SGN-E718274_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	34906	35287	0.995	+	0	ID=GTH_SGN_E_tom_potato_match_part_53;Target=SGN-E718274 305 686 +;Parent=SGN-E718274_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match	30823	35282	0.992	+	0	ID=SGN-E719447_alignment_1;Target=SGN-E719447 20 679 +
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	30823	30952	0.969	+	0	ID=GTH_SGN_E_tom_potato_match_part_54;Target=SGN-E719447 20 148 +;Parent=SGN-E719447_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	31041	31093	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_55;Target=SGN-E719447 149 201 +;Parent=SGN-E719447_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	31677	31777	0.990	+	0	ID=GTH_SGN_E_tom_potato_match_part_56;Target=SGN-E719447 202 302 +;Parent=SGN-E719447_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	34906	35282	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_57;Target=SGN-E719447 303 679 +;Parent=SGN-E719447_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match	30824	35145	0.987	+	0	ID=SGN-E200565_alignment_1;Target=SGN-E200565 1 523 +
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	30824	30952	0.953	+	0	ID=GTH_SGN_E_tom_potato_match_part_58;Target=SGN-E200565 1 129 +;Parent=SGN-E200565_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	31041	31093	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_59;Target=SGN-E200565 130 182 +;Parent=SGN-E200565_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	31677	31777	0.990	+	0	ID=GTH_SGN_E_tom_potato_match_part_60;Target=SGN-E200565 183 283 +;Parent=SGN-E200565_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	34906	35145	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_61;Target=SGN-E200565 284 523 +;Parent=SGN-E200565_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match	30825	35293	0.978	+	0	ID=SGN-E713490_alignment_1;Target=SGN-E713490 1 669 +
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	30825	30952	0.992	+	0	ID=GTH_SGN_E_tom_potato_match_part_62;Target=SGN-E713490 1 128 +;Parent=SGN-E713490_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	31041	31093	0.981	+	0	ID=GTH_SGN_E_tom_potato_match_part_63;Target=SGN-E713490 129 181 +;Parent=SGN-E713490_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	31677	31777	0.990	+	0	ID=GTH_SGN_E_tom_potato_match_part_64;Target=SGN-E713490 182 282 +;Parent=SGN-E713490_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	34906	35293	0.969	+	0	ID=GTH_SGN_E_tom_potato_match_part_65;Target=SGN-E713490 283 669 +;Parent=SGN-E713490_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match	30825	35292	0.990	+	0	ID=SGN-E713314_alignment_1;Target=SGN-E713314 1 669 +
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	30825	30952	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_66;Target=SGN-E713314 1 128 +;Parent=SGN-E713314_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	31041	31093	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_67;Target=SGN-E713314 129 181 +;Parent=SGN-E713314_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	31677	31777	0.990	+	0	ID=GTH_SGN_E_tom_potato_match_part_68;Target=SGN-E713314 182 282 +;Parent=SGN-E713314_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	34906	35292	0.984	+	0	ID=GTH_SGN_E_tom_potato_match_part_69;Target=SGN-E713314 283 669 +;Parent=SGN-E713314_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match	30831	35260	0.994	+	0	ID=SGN-E295102_alignment_1;Target=SGN-E295102 1 631 +
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	30831	30952	0.992	+	0	ID=GTH_SGN_E_tom_potato_match_part_70;Target=SGN-E295102 1 122 +;Parent=SGN-E295102_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	31041	31093	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_71;Target=SGN-E295102 123 175 +;Parent=SGN-E295102_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	31677	31777	0.990	+	0	ID=GTH_SGN_E_tom_potato_match_part_72;Target=SGN-E295102 176 276 +;Parent=SGN-E295102_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	34906	35260	0.994	+	0	ID=GTH_SGN_E_tom_potato_match_part_73;Target=SGN-E295102 277 631 +;Parent=SGN-E295102_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match	40638	44036	0.970	+	0	ID=SGN-E622833_alignment_1;Target=SGN-E622833 1 232 +
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	40638	40800	0.957	+	0	ID=GTH_SGN_E_tom_potato_match_part_74;Target=SGN-E622833 1 163 +;Parent=SGN-E622833_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	43968	44036	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_75;Target=SGN-E622833 164 232 +;Parent=SGN-E622833_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match	42861	43669	0.952	+	0	ID=SGN-E692446_alignment_1;Target=SGN-E692446 23 818 +
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	match_part	42861	43669	0.952	+	0	ID=GTH_SGN_E_tom_potato_match_part_76;Target=SGN-E692446 23 818 +;Parent=SGN-E692446_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	gene	16807	19695	.	+	0	ID=GTH_SGN_E_tom_potato_gene_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	mRNA	16807	19695	.	+	0	ID=GTH_SGN_E_tom_potato_gene_1_AGS_1;Parent=GTH_SGN_E_tom_potato_gene_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	exon	16807	17192	0.922	+	0	ID=GTH_SGN_E_tom_potato_exon_1;Parent=GTH_SGN_E_tom_potato_gene_1_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	exon	17470	17673	1.000	+	0	ID=GTH_SGN_E_tom_potato_exon_2;Parent=GTH_SGN_E_tom_potato_gene_1_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	exon	18747	18907	1.000	+	0	ID=GTH_SGN_E_tom_potato_exon_3;Parent=GTH_SGN_E_tom_potato_gene_1_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	exon	19628	19695	0.985	+	0	ID=GTH_SGN_E_tom_potato_exon_4;Parent=GTH_SGN_E_tom_potato_gene_1_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	gene	20617	22823	.	+	0	ID=GTH_SGN_E_tom_potato_gene_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	mRNA	20617	22823	.	+	0	ID=GTH_SGN_E_tom_potato_gene_2_AGS_1;Parent=GTH_SGN_E_tom_potato_gene_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	exon	20617	20688	1.000	+	0	ID=GTH_SGN_E_tom_potato_exon_5;Parent=GTH_SGN_E_tom_potato_gene_2_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	exon	21645	21844	1.000	+	0	ID=GTH_SGN_E_tom_potato_exon_6;Parent=GTH_SGN_E_tom_potato_gene_2_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	exon	22222	22356	1.000	+	0	ID=GTH_SGN_E_tom_potato_exon_7;Parent=GTH_SGN_E_tom_potato_gene_2_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	exon	22472	22823	0.997	+	0	ID=GTH_SGN_E_tom_potato_exon_8;Parent=GTH_SGN_E_tom_potato_gene_2_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	gene	23114	23748	.	-	0	ID=GTH_SGN_E_tom_potato_gene_3
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	mRNA	23114	23748	.	-	0	ID=GTH_SGN_E_tom_potato_gene_3_AGS_1;Parent=GTH_SGN_E_tom_potato_gene_3
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	exon	23653	23748	1.000	-	0	ID=GTH_SGN_E_tom_potato_exon_9;Parent=GTH_SGN_E_tom_potato_gene_3_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	exon	23114	23399	1.000	-	0	ID=GTH_SGN_E_tom_potato_exon_10;Parent=GTH_SGN_E_tom_potato_gene_3_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	gene	25053	27293	.	-	0	ID=GTH_SGN_E_tom_potato_gene_4
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	mRNA	25053	27293	.	-	0	ID=GTH_SGN_E_tom_potato_gene_4_AGS_1;Parent=GTH_SGN_E_tom_potato_gene_4
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	exon	27226	27293	0.956	-	0	ID=GTH_SGN_E_tom_potato_exon_11;Parent=GTH_SGN_E_tom_potato_gene_4_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	exon	26732	26980	0.992	-	0	ID=GTH_SGN_E_tom_potato_exon_12;Parent=GTH_SGN_E_tom_potato_gene_4_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	exon	25900	25975	0.987	-	0	ID=GTH_SGN_E_tom_potato_exon_13;Parent=GTH_SGN_E_tom_potato_gene_4_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	exon	25053	25191	0.978	-	0	ID=GTH_SGN_E_tom_potato_exon_14;Parent=GTH_SGN_E_tom_potato_gene_4_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	gene	29896	30394	.	-	0	ID=GTH_SGN_E_tom_potato_gene_5
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	mRNA	29896	30394	.	-	0	ID=GTH_SGN_E_tom_potato_gene_5_AGS_1;Parent=GTH_SGN_E_tom_potato_gene_5
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	exon	29896	30394	0.992	-	0	ID=GTH_SGN_E_tom_potato_exon_15;Parent=GTH_SGN_E_tom_potato_gene_5_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	gene	30747	35293	.	+	0	ID=GTH_SGN_E_tom_potato_gene_6
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	mRNA	30747	35293	.	+	0	ID=GTH_SGN_E_tom_potato_gene_6_AGS_1;Parent=GTH_SGN_E_tom_potato_gene_6
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	exon	30747	30952	1.000	+	0	ID=GTH_SGN_E_tom_potato_exon_16;Parent=GTH_SGN_E_tom_potato_gene_6_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	exon	31041	31093	1.000	+	0	ID=GTH_SGN_E_tom_potato_exon_17;Parent=GTH_SGN_E_tom_potato_gene_6_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	exon	31677	31777	0.990	+	0	ID=GTH_SGN_E_tom_potato_exon_18;Parent=GTH_SGN_E_tom_potato_gene_6_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	exon	34906	35293	1.000	+	0	ID=GTH_SGN_E_tom_potato_exon_19;Parent=GTH_SGN_E_tom_potato_gene_6_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	gene	40638	44036	.	+	0	ID=GTH_SGN_E_tom_potato_gene_7
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	mRNA	40638	44036	.	+	0	ID=GTH_SGN_E_tom_potato_gene_7_AGS_1;Parent=GTH_SGN_E_tom_potato_gene_7
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	exon	40638	40800	0.957	+	0	ID=GTH_SGN_E_tom_potato_exon_20;Parent=GTH_SGN_E_tom_potato_gene_7_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	exon	43968	44036	1.000	+	0	ID=GTH_SGN_E_tom_potato_exon_21;Parent=GTH_SGN_E_tom_potato_gene_7_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	mRNA	42861	43669	.	+	0	ID=GTH_SGN_E_tom_potato_gene_7_AGS_2;Parent=GTH_SGN_E_tom_potato_gene_7
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato_potato	exon	42861	43669	0.952	+	0	ID=GTH_SGN_E_tom_potato_exon_22;Parent=GTH_SGN_E_tom_potato_gene_7_AGS_2
C09SLe0019J03.3	RepeatMasker	nucleotide_motif	1028	1175	424	-	0	ID=Copia00143_alignment_1;Target=Copia00143 77 225 -
C09SLe0019J03.3	RepeatMasker	nucleotide_motif	4728	4962	558	+	0	ID=SONATA1_alignment_1;Target=SONATA1 7 237 +
C09SLe0019J03.3	RepeatMasker	nucleotide_motif	6633	6857	389	+	0	ID=Copia00205_alignment_1;Target=Copia00205 4774 5005 +
C09SLe0019J03.3	RepeatMasker	nucleotide_motif	10210	10349	303	-	0	ID=SHAMUDRA3_MT_alignment_1;Target=SHAMUDRA3_MT 3106 3245 -
C09SLe0019J03.3	RepeatMasker	nucleotide_motif	10516	10617	276	-	0	ID=OSMUD1_alignment_1;Target=OSMUD1 2549 2650 -
C09SLe0019J03.3	RepeatMasker	nucleotide_motif	10978	11235	518	-	0	ID=OSMUD1_alignment_2;Target=OSMUD1 1901 2119 -
C09SLe0019J03.3	RepeatMasker	nucleotide_motif	22712	22810	395	-	0	ID=TS2_alignment_1;Target=TS2 559 651 -
C09SLe0019J03.3	RepeatMasker	nucleotide_motif	24579	24682	293	+	0	ID=SONATA2_alignment_1;Target=SONATA2 3 106 +
C09SLe0019J03.3	RepeatMasker	nucleotide_motif	26350	26449	315	+	0	ID=SOD_SINE_alignment_1;Target=SOD_SINE 91 193 +
C09SLe0019J03.3	RepeatMasker	nucleotide_motif	27455	27628	1016	-	0	ID=SONATA2_alignment_2;Target=SONATA2 1 175 -
C09SLe0019J03.3	RepeatMasker	nucleotide_motif	28599	28953	1447	+	0	ID=Copia00172_alignment_1;Target=Copia00172 1084 1434 +
C09SLe0019J03.3	RepeatMasker	nucleotide_motif	30125	30296	770	-	0	ID=Copia00172_alignment_2;Target=Copia00172 340 524 -
C09SLe0019J03.3	RepeatMasker	nucleotide_motif	31534	31635	318	+	0	ID=SOD_SINE_alignment_2;Target=SOD_SINE 87 190 +
C09SLe0019J03.3	BLAST_tomato_bacs	match	8399	9580	1398	+	0	ID=C08SLe0009O08.1_rev_alignment_1;blast_gaps=6;Target=clone-C08SLe0009O08.1 47495 48660 -;blast_percent_identity=91.04;blast_mismatches=88;blast_evalue=0.0
C09SLe0019J03.3	BLAST_tomato_bacs	match	10934	12641	2137	+	0	ID=C08SLe0009O08.1_rev_alignment_2;blast_gaps=7;Target=clone-C08SLe0009O08.1 45111 46812 -;blast_percent_identity=92.52;blast_mismatches=116;blast_evalue=0.0
C09SLe0019J03.3	BLAST_tomato_bacs	match	1	1008	1998	+	0	ID=C09HBa0116C14.2_fwd_alignment_1;blast_gaps=0;Target=clone-C09HBa0116C14.2 106900 107907 +;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=0.0
C09SLe0019J03.3	BLAST_tomato_bacs	match	1029	2973	3814	+	0	ID=C09HBa0116C14.2_fwd_alignment_2;blast_gaps=0;Target=clone-C09HBa0116C14.2 107928 109872 +;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=0.0
C09SLe0019J03.3	BLAST_tomato_bac_ends	clone	30	44036	1465	+	0	is_problematic=0;ID=C09SLe0019J03.3-SL_EcoRI0019J03_1
C09SLe0019J03.3	BLAST_tomato_bac_ends	clone_start	30	837	1570	+	0	ID=C09SLe0019J03.3-SL_EcoRI0019J03_T7_227702_1;blast_gaps=1;Target=SL_EcoRI0019J03_T7_227702 4 810 +;Parent=C09SLe0019J03.3-SL_EcoRI0019J03_1;is_problematic=0;blast_percent_identity=99.63;blast_mismatches=2;blast_evalue=0.0
C09SLe0019J03.3	BLAST_tomato_bac_ends	clone_end	43351	44036	1360	+	0	ID=C09SLe0019J03.3-SL_EcoRI0019J03_SP6_227701_1;blast_gaps=0;Target=SL_EcoRI0019J03_SP6_227701 29 714 -;Parent=C09SLe0019J03.3-SL_EcoRI0019J03_1;is_problematic=0;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=0.0
C09SLe0019J03.3	BLAST_tomato_bac_ends	match	1853	2363	963	+	0	ID=C09SLe0019J03.3-SL_MboI0077C20_T7_169852_1;blast_gaps=0;Target=SL_MboI0077C20_T7_169852 1 511 -;is_problematic=0;blast_percent_identity=99.80;blast_mismatches=1;blast_evalue=0.0
C09SLe0019J03.3	BLAST_tomato_bac_ends	match	2384	2979	1181	+	0	ID=C09SLe0019J03.3-LE_HBa0116C14_T7_253191_1;blast_gaps=0;Target=LE_HBa0116C14_T7_253191 11 606 -;is_problematic=0;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=0.0
C09SLe0019J03.3	BLAST_tomato_bac_ends	match	2593	2868	547	+	0	ID=C09SLe0019J03.3-LE_HBa0093I20_T7_86055_1;blast_gaps=0;Target=LE_HBa0093I20_T7_86055 1 276 -;is_problematic=0;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=2e-152
C09SLe0019J03.3	BLAST_tomato_bac_ends	match	3399	4040	1154	+	0	ID=C09SLe0019J03.3-LE_HBa0026G02_T7_136600_1;blast_gaps=0;Target=LE_HBa0026G02_T7_136600 1 642 -;is_problematic=0;blast_percent_identity=98.60;blast_mismatches=9;blast_evalue=0.0
C09SLe0019J03.3	BLAST_tomato_bac_ends	match	5217	5393	343	+	0	ID=C09SLe0019J03.3-LE_HBa0041G07_T7_42925_1;blast_gaps=0;Target=LE_HBa0041G07_T7_42925 608 784 -;is_problematic=0;blast_percent_identity=99.44;blast_mismatches=1;blast_evalue=5e-91
C09SLe0019J03.3	BLAST_tomato_bac_ends	match	5804	6000	391	+	0	ID=C09SLe0019J03.3-LE_HBa0041G07_T7_42925_2;blast_gaps=0;Target=LE_HBa0041G07_T7_42925 1 197 -;is_problematic=0;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=2e-105
C09SLe0019J03.3	BLAST_tomato_bac_ends	match	7999	8135	272	+	0	ID=C09SLe0019J03.3-LE_HBa0185O15_SP6_266311_1;blast_gaps=0;Target=LE_HBa0185O15_SP6_266311 93 229 +;is_problematic=0;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=1e-69
C09SLe0019J03.3	BLAST_tomato_bac_ends	match	7999	8135	272	+	0	ID=C09SLe0019J03.3-LE_HBa0022B09_T7_133302_1;blast_gaps=0;Target=LE_HBa0022B09_T7_133302 108 244 +;is_problematic=0;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=1e-69
C09SLe0019J03.3	BLAST_tomato_bac_ends	match	8024	8233	408	+	0	ID=C09SLe0019J03.3-LE_HBa0115H19_T7_39157_1;blast_gaps=0;Target=LE_HBa0115H19_T7_39157 421 630 +;is_problematic=0;blast_percent_identity=99.52;blast_mismatches=1;blast_evalue=9e-111
C09SLe0019J03.3	BLAST_tomato_bac_ends	match	9709	9866	283	+	0	ID=C09SLe0019J03.3-LE_HBa0058F19_T7_45973_1;blast_gaps=1;Target=LE_HBa0058F19_T7_45973 1 159 -;is_problematic=0;blast_percent_identity=98.11;blast_mismatches=2;blast_evalue=4e-73
C09SLe0019J03.3	BLAST_tomato_bac_ends	match	10072	10497	789	+	0	ID=C09SLe0019J03.3-LE_HBa0070A14_SP6_15002_1;blast_gaps=0;Target=LE_HBa0070A14_SP6_15002 1 426 +;is_problematic=0;blast_percent_identity=98.36;blast_mismatches=7;blast_evalue=0.0
C09SLe0019J03.3	BLAST_tomato_bac_ends	match	10116	10406	545	+	0	ID=C09SLe0019J03.3-SL_MboI0056B05_T7_156211_1;blast_gaps=0;Target=SL_MboI0056B05_T7_156211 1 291 -;is_problematic=0;blast_percent_identity=98.63;blast_mismatches=4;blast_evalue=6e-152
C09SLe0019J03.3	BLAST_tomato_bac_ends	match	11209	11810	1070	+	0	ID=C09SLe0019J03.3-SL_FOS0094F08_pIBF_512353_1;blast_gaps=0;Target=SL_FOS0094F08_pIBF_512353 2 603 -;is_problematic=0;blast_percent_identity=99.17;blast_mismatches=5;blast_evalue=0.0
C09SLe0019J03.3	BLAST_tomato_bac_ends	match	11247	11475	381	+	0	ID=C09SLe0019J03.3-SL_FOS0185O07_pIBF_542628_1;blast_gaps=0;Target=SL_FOS0185O07_pIBF_542628 2 230 +;is_problematic=0;blast_percent_identity=98.25;blast_mismatches=4;blast_evalue=2e-102
C09SLe0019J03.3	BLAST_tomato_bac_ends	match	11343	11983	1110	+	0	ID=C09SLe0019J03.3-LE_HBa0072D09_SP6_84256_1;blast_gaps=1;Target=LE_HBa0072D09_SP6_84256 1 642 -;is_problematic=0;blast_percent_identity=98.60;blast_mismatches=8;blast_evalue=0.0
C09SLe0019J03.3	BLAST_tomato_bac_ends	clone	11622	44036	910	.	0	is_problematic=1;ID=C09SLe0019J03.3-SL_FOS0001G04_1
C09SLe0019J03.3	BLAST_tomato_bac_ends	clone_end	11622	12205	1045	+	0	ID=C09SLe0019J03.3-SL_FOS0001G04_pIBR_432375_1;blast_gaps=0;Target=SL_FOS0001G04_pIBR_432375 3 586 +;Parent=C09SLe0019J03.3-SL_FOS0001G04_1;is_problematic=1;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=0.0
C09SLe0019J03.3	BLAST_tomato_bac_ends	clone_start	43646	44036	775	+	0	ID=C09SLe0019J03.3-SL_FOS0001G04_pIBF_432374_1;blast_gaps=0;Target=SL_FOS0001G04_pIBF_432374 284 674 -;Parent=C09SLe0019J03.3-SL_FOS0001G04_1;is_problematic=1;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=0.0
C09SLe0019J03.3	BLAST_tomato_bac_ends	match	12364	12664	523	+	0	ID=C09SLe0019J03.3-SL_FOS0124L11_pIBR_486444_1;blast_gaps=0;Target=SL_FOS0124L11_pIBR_486444 1 301 +;is_problematic=0;blast_percent_identity=98.34;blast_mismatches=5;blast_evalue=2e-145
C09SLe0019J03.3	BLAST_tomato_bac_ends	match	12793	13279	888	+	0	ID=C09SLe0019J03.3-SL_MboI0002A03_T7_143608_1;blast_gaps=1;Target=SL_MboI0002A03_T7_143608 1 486 -;is_problematic=0;blast_percent_identity=99.59;blast_mismatches=1;blast_evalue=0.0
C09SLe0019J03.3	BLAST_tomato_bac_ends	match	12796	13257	801	+	0	ID=C09SLe0019J03.3-LE_HBa0185O15_SP6_266311_2;blast_gaps=1;Target=LE_HBa0185O15_SP6_266311 93 555 -;is_problematic=0;blast_percent_identity=98.49;blast_mismatches=6;blast_evalue=0.0
C09SLe0019J03.3	BLAST_tomato_bac_ends	match	12796	13257	801	+	0	ID=C09SLe0019J03.3-LE_HBa0022B09_T7_133302_2;blast_gaps=1;Target=LE_HBa0022B09_T7_133302 108 570 -;is_problematic=0;blast_percent_identity=98.49;blast_mismatches=6;blast_evalue=0.0
C09SLe0019J03.3	BLAST_tomato_bac_ends	match	15126	15628	997	+	0	ID=C09SLe0019J03.3-SL_FOS0154N14_pIBR_518787_1;blast_gaps=0;Target=SL_FOS0154N14_pIBR_518787 3 505 -;is_problematic=0;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=0.0
C09SLe0019J03.3	BLAST_tomato_bac_ends	match	18579	18739	295	+	0	ID=C09SLe0019J03.3-SL_MboI0093A09_T7_183558_1;blast_gaps=0;Target=SL_MboI0093A09_T7_183558 1 161 -;is_problematic=0;blast_percent_identity=98.14;blast_mismatches=3;blast_evalue=1e-76
C09SLe0019J03.3	BLAST_tomato_bac_ends	match	29331	29868	954	+	0	ID=C09SLe0019J03.3-SL_FOS0097C02_pIBF_511488_1;blast_gaps=0;Target=SL_FOS0097C02_pIBF_511488 2 539 -;is_problematic=0;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=0.0
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match	17055	19695	0.995	+	0	ID=SGN-E269922_alignment_2;Target=SGN-E269922 1 572 +
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	17055	17192	0.986	+	0	ID=GTH_SGN_E_tom_match_part_1;Target=SGN-E269922 1 139 +;Parent=SGN-E269922_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	17470	17673	1.000	+	0	ID=GTH_SGN_E_tom_match_part_2;Target=SGN-E269922 140 343 +;Parent=SGN-E269922_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	18747	18907	1.000	+	0	ID=GTH_SGN_E_tom_match_part_3;Target=SGN-E269922 344 504 +;Parent=SGN-E269922_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	19628	19695	0.985	+	0	ID=GTH_SGN_E_tom_match_part_4;Target=SGN-E269922 505 572 +;Parent=SGN-E269922_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match	20617	22823	0.999	+	0	ID=SGN-E553951_alignment_2;Target=SGN-E553951 1 759 +
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	20617	20688	1.000	+	0	ID=GTH_SGN_E_tom_match_part_5;Target=SGN-E553951 1 72 +;Parent=SGN-E553951_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	21645	21844	1.000	+	0	ID=GTH_SGN_E_tom_match_part_6;Target=SGN-E553951 73 272 +;Parent=SGN-E553951_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	22222	22356	1.000	+	0	ID=GTH_SGN_E_tom_match_part_7;Target=SGN-E553951 273 407 +;Parent=SGN-E553951_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	22472	22823	0.997	+	0	ID=GTH_SGN_E_tom_match_part_8;Target=SGN-E553951 408 759 +;Parent=SGN-E553951_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match	20617	22781	0.993	+	0	ID=SGN-E554578_alignment_2;Target=SGN-E554578 1 717 +
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	20617	20688	1.000	+	0	ID=GTH_SGN_E_tom_match_part_9;Target=SGN-E554578 1 72 +;Parent=SGN-E554578_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	21645	21844	1.000	+	0	ID=GTH_SGN_E_tom_match_part_10;Target=SGN-E554578 73 272 +;Parent=SGN-E554578_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	22222	22356	0.993	+	0	ID=GTH_SGN_E_tom_match_part_11;Target=SGN-E554578 273 407 +;Parent=SGN-E554578_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	22472	22781	0.987	+	0	ID=GTH_SGN_E_tom_match_part_12;Target=SGN-E554578 408 717 +;Parent=SGN-E554578_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match	23114	23748	0.982	-	0	ID=SGN-E541942_alignment_2;Target=SGN-E541942 1 382 +
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	23653	23748	1.000	-	0	ID=GTH_SGN_E_tom_match_part_13;Target=SGN-E541942 1 96 +;Parent=SGN-E541942_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	23114	23399	0.976	-	0	ID=GTH_SGN_E_tom_match_part_14;Target=SGN-E541942 97 382 +;Parent=SGN-E541942_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match	23114	23747	0.974	-	0	ID=SGN-E300815_alignment_2;Target=SGN-E300815 1 381 +
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	23653	23747	1.000	-	0	ID=GTH_SGN_E_tom_match_part_15;Target=SGN-E300815 1 95 +;Parent=SGN-E300815_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	23114	23399	0.965	-	0	ID=GTH_SGN_E_tom_match_part_16;Target=SGN-E300815 96 381 +;Parent=SGN-E300815_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match	23129	23748	1.000	-	0	ID=SGN-E541940_alignment_2;Target=SGN-E541940 1 367 +
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	23653	23748	1.000	-	0	ID=GTH_SGN_E_tom_match_part_17;Target=SGN-E541940 1 96 +;Parent=SGN-E541940_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	23129	23399	1.000	-	0	ID=GTH_SGN_E_tom_match_part_18;Target=SGN-E541940 97 367 +;Parent=SGN-E541940_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match	25053	27293	0.983	-	0	ID=SGN-E365306_alignment_2;Target=SGN-E365306 28 560 +
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	27226	27293	0.956	-	0	ID=GTH_SGN_E_tom_match_part_19;Target=SGN-E365306 28 96 +;Parent=SGN-E365306_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	26732	26980	0.992	-	0	ID=GTH_SGN_E_tom_match_part_20;Target=SGN-E365306 97 345 +;Parent=SGN-E365306_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	25900	25975	0.987	-	0	ID=GTH_SGN_E_tom_match_part_21;Target=SGN-E365306 346 421 +;Parent=SGN-E365306_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	25053	25191	0.978	-	0	ID=GTH_SGN_E_tom_match_part_22;Target=SGN-E365306 422 560 +;Parent=SGN-E365306_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match	29896	30394	0.992	-	0	ID=SGN-E323811_alignment_2;Target=SGN-E323811 1 499 +
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	29896	30394	0.992	-	0	ID=GTH_SGN_E_tom_match_part_23;Target=SGN-E323811 1 499 +;Parent=SGN-E323811_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match	30747	35130	0.998	+	0	ID=SGN-E551058_alignment_2;Target=SGN-E551058 1 585 +
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	30747	30952	1.000	+	0	ID=GTH_SGN_E_tom_match_part_24;Target=SGN-E551058 1 206 +;Parent=SGN-E551058_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	31041	31093	1.000	+	0	ID=GTH_SGN_E_tom_match_part_25;Target=SGN-E551058 207 259 +;Parent=SGN-E551058_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	31677	31777	0.990	+	0	ID=GTH_SGN_E_tom_match_part_26;Target=SGN-E551058 260 360 +;Parent=SGN-E551058_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	34906	35130	1.000	+	0	ID=GTH_SGN_E_tom_match_part_27;Target=SGN-E551058 361 585 +;Parent=SGN-E551058_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match	30747	35130	0.998	+	0	ID=SGN-E688842_alignment_2;Target=SGN-E688842 1 585 +
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	30747	30952	1.000	+	0	ID=GTH_SGN_E_tom_match_part_28;Target=SGN-E688842 1 206 +;Parent=SGN-E688842_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	31041	31093	1.000	+	0	ID=GTH_SGN_E_tom_match_part_29;Target=SGN-E688842 207 259 +;Parent=SGN-E688842_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	31677	31777	0.990	+	0	ID=GTH_SGN_E_tom_match_part_30;Target=SGN-E688842 260 360 +;Parent=SGN-E688842_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	34906	35130	1.000	+	0	ID=GTH_SGN_E_tom_match_part_31;Target=SGN-E688842 361 585 +;Parent=SGN-E688842_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match	30748	35176	0.998	+	0	ID=SGN-E259767_alignment_2;Target=SGN-E259767 1 630 +
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	30748	30952	1.000	+	0	ID=GTH_SGN_E_tom_match_part_32;Target=SGN-E259767 1 205 +;Parent=SGN-E259767_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	31041	31093	1.000	+	0	ID=GTH_SGN_E_tom_match_part_33;Target=SGN-E259767 206 258 +;Parent=SGN-E259767_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	31677	31777	0.990	+	0	ID=GTH_SGN_E_tom_match_part_34;Target=SGN-E259767 259 359 +;Parent=SGN-E259767_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	34906	35176	1.000	+	0	ID=GTH_SGN_E_tom_match_part_35;Target=SGN-E259767 360 630 +;Parent=SGN-E259767_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match	30775	35145	0.993	+	0	ID=SGN-E369165_alignment_2;Target=SGN-E369165 1 573 +
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	30775	30952	1.000	+	0	ID=GTH_SGN_E_tom_match_part_36;Target=SGN-E369165 1 178 +;Parent=SGN-E369165_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	31041	31093	1.000	+	0	ID=GTH_SGN_E_tom_match_part_37;Target=SGN-E369165 179 231 +;Parent=SGN-E369165_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	31677	31777	0.990	+	0	ID=GTH_SGN_E_tom_match_part_38;Target=SGN-E369165 232 332 +;Parent=SGN-E369165_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	34906	35145	0.988	+	0	ID=GTH_SGN_E_tom_match_part_39;Target=SGN-E369165 333 573 +;Parent=SGN-E369165_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match	30775	35114	0.994	+	0	ID=SGN-E242690_alignment_2;Target=SGN-E242690 1 541 +
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	30775	30952	1.000	+	0	ID=GTH_SGN_E_tom_match_part_40;Target=SGN-E242690 1 178 +;Parent=SGN-E242690_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	31041	31093	1.000	+	0	ID=GTH_SGN_E_tom_match_part_41;Target=SGN-E242690 179 231 +;Parent=SGN-E242690_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	31677	31777	0.990	+	0	ID=GTH_SGN_E_tom_match_part_42;Target=SGN-E242690 232 332 +;Parent=SGN-E242690_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	34906	35114	0.990	+	0	ID=GTH_SGN_E_tom_match_part_43;Target=SGN-E242690 333 541 +;Parent=SGN-E242690_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match	30775	34965	0.997	+	0	ID=SGN-E240678_alignment_2;Target=SGN-E240678 1 392 +
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	30775	30952	1.000	+	0	ID=GTH_SGN_E_tom_match_part_44;Target=SGN-E240678 1 178 +;Parent=SGN-E240678_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	31041	31093	1.000	+	0	ID=GTH_SGN_E_tom_match_part_45;Target=SGN-E240678 179 231 +;Parent=SGN-E240678_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	31677	31777	0.990	+	0	ID=GTH_SGN_E_tom_match_part_46;Target=SGN-E240678 232 332 +;Parent=SGN-E240678_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	34906	34965	1.000	+	0	ID=GTH_SGN_E_tom_match_part_47;Target=SGN-E240678 333 392 +;Parent=SGN-E240678_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match	30817	35287	0.996	+	0	ID=SGN-E718274_alignment_2;Target=SGN-E718274 15 686 +
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	30817	30952	1.000	+	0	ID=GTH_SGN_E_tom_match_part_48;Target=SGN-E718274 15 150 +;Parent=SGN-E718274_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	31041	31093	1.000	+	0	ID=GTH_SGN_E_tom_match_part_49;Target=SGN-E718274 151 203 +;Parent=SGN-E718274_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	31677	31777	0.990	+	0	ID=GTH_SGN_E_tom_match_part_50;Target=SGN-E718274 204 304 +;Parent=SGN-E718274_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	34906	35287	0.995	+	0	ID=GTH_SGN_E_tom_match_part_51;Target=SGN-E718274 305 686 +;Parent=SGN-E718274_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match	30823	35282	0.992	+	0	ID=SGN-E719447_alignment_2;Target=SGN-E719447 20 679 +
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	30823	30952	0.969	+	0	ID=GTH_SGN_E_tom_match_part_52;Target=SGN-E719447 20 148 +;Parent=SGN-E719447_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	31041	31093	1.000	+	0	ID=GTH_SGN_E_tom_match_part_53;Target=SGN-E719447 149 201 +;Parent=SGN-E719447_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	31677	31777	0.990	+	0	ID=GTH_SGN_E_tom_match_part_54;Target=SGN-E719447 202 302 +;Parent=SGN-E719447_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	34906	35282	1.000	+	0	ID=GTH_SGN_E_tom_match_part_55;Target=SGN-E719447 303 679 +;Parent=SGN-E719447_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match	30824	35145	0.987	+	0	ID=SGN-E200565_alignment_2;Target=SGN-E200565 1 523 +
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	30824	30952	0.953	+	0	ID=GTH_SGN_E_tom_match_part_56;Target=SGN-E200565 1 129 +;Parent=SGN-E200565_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	31041	31093	1.000	+	0	ID=GTH_SGN_E_tom_match_part_57;Target=SGN-E200565 130 182 +;Parent=SGN-E200565_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	31677	31777	0.990	+	0	ID=GTH_SGN_E_tom_match_part_58;Target=SGN-E200565 183 283 +;Parent=SGN-E200565_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	34906	35145	1.000	+	0	ID=GTH_SGN_E_tom_match_part_59;Target=SGN-E200565 284 523 +;Parent=SGN-E200565_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match	30825	35293	0.978	+	0	ID=SGN-E713490_alignment_2;Target=SGN-E713490 1 669 +
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	30825	30952	0.992	+	0	ID=GTH_SGN_E_tom_match_part_60;Target=SGN-E713490 1 128 +;Parent=SGN-E713490_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	31041	31093	0.981	+	0	ID=GTH_SGN_E_tom_match_part_61;Target=SGN-E713490 129 181 +;Parent=SGN-E713490_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	31677	31777	0.990	+	0	ID=GTH_SGN_E_tom_match_part_62;Target=SGN-E713490 182 282 +;Parent=SGN-E713490_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	34906	35293	0.969	+	0	ID=GTH_SGN_E_tom_match_part_63;Target=SGN-E713490 283 669 +;Parent=SGN-E713490_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match	30825	35292	0.990	+	0	ID=SGN-E713314_alignment_2;Target=SGN-E713314 1 669 +
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	30825	30952	1.000	+	0	ID=GTH_SGN_E_tom_match_part_64;Target=SGN-E713314 1 128 +;Parent=SGN-E713314_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	31041	31093	1.000	+	0	ID=GTH_SGN_E_tom_match_part_65;Target=SGN-E713314 129 181 +;Parent=SGN-E713314_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	31677	31777	0.990	+	0	ID=GTH_SGN_E_tom_match_part_66;Target=SGN-E713314 182 282 +;Parent=SGN-E713314_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	34906	35292	0.984	+	0	ID=GTH_SGN_E_tom_match_part_67;Target=SGN-E713314 283 669 +;Parent=SGN-E713314_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match	30831	35260	0.994	+	0	ID=SGN-E295102_alignment_2;Target=SGN-E295102 1 631 +
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	30831	30952	0.992	+	0	ID=GTH_SGN_E_tom_match_part_68;Target=SGN-E295102 1 122 +;Parent=SGN-E295102_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	31041	31093	1.000	+	0	ID=GTH_SGN_E_tom_match_part_69;Target=SGN-E295102 123 175 +;Parent=SGN-E295102_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	31677	31777	0.990	+	0	ID=GTH_SGN_E_tom_match_part_70;Target=SGN-E295102 176 276 +;Parent=SGN-E295102_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	34906	35260	0.994	+	0	ID=GTH_SGN_E_tom_match_part_71;Target=SGN-E295102 277 631 +;Parent=SGN-E295102_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match	42861	43669	0.952	+	0	ID=SGN-E692446_alignment_2;Target=SGN-E692446 23 818 +
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	match_part	42861	43669	0.952	+	0	ID=GTH_SGN_E_tom_match_part_72;Target=SGN-E692446 23 818 +;Parent=SGN-E692446_alignment_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	gene	17055	19695	.	+	0	ID=GTH_SGN_E_tom_gene_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	mRNA	17055	19695	.	+	0	ID=GTH_SGN_E_tom_gene_1_AGS_1;Parent=GTH_SGN_E_tom_gene_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	exon	17055	17192	0.986	+	0	ID=GTH_SGN_E_tom_exon_1;Parent=GTH_SGN_E_tom_gene_1_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	exon	17470	17673	1.000	+	0	ID=GTH_SGN_E_tom_exon_2;Parent=GTH_SGN_E_tom_gene_1_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	exon	18747	18907	1.000	+	0	ID=GTH_SGN_E_tom_exon_3;Parent=GTH_SGN_E_tom_gene_1_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	exon	19628	19695	0.985	+	0	ID=GTH_SGN_E_tom_exon_4;Parent=GTH_SGN_E_tom_gene_1_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	gene	20617	22823	.	+	0	ID=GTH_SGN_E_tom_gene_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	mRNA	20617	22823	.	+	0	ID=GTH_SGN_E_tom_gene_2_AGS_1;Parent=GTH_SGN_E_tom_gene_2
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	exon	20617	20688	1.000	+	0	ID=GTH_SGN_E_tom_exon_5;Parent=GTH_SGN_E_tom_gene_2_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	exon	21645	21844	1.000	+	0	ID=GTH_SGN_E_tom_exon_6;Parent=GTH_SGN_E_tom_gene_2_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	exon	22222	22356	1.000	+	0	ID=GTH_SGN_E_tom_exon_7;Parent=GTH_SGN_E_tom_gene_2_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	exon	22472	22823	0.997	+	0	ID=GTH_SGN_E_tom_exon_8;Parent=GTH_SGN_E_tom_gene_2_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	gene	23114	23748	.	-	0	ID=GTH_SGN_E_tom_gene_3
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	mRNA	23114	23748	.	-	0	ID=GTH_SGN_E_tom_gene_3_AGS_1;Parent=GTH_SGN_E_tom_gene_3
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	exon	23653	23748	1.000	-	0	ID=GTH_SGN_E_tom_exon_9;Parent=GTH_SGN_E_tom_gene_3_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	exon	23114	23399	1.000	-	0	ID=GTH_SGN_E_tom_exon_10;Parent=GTH_SGN_E_tom_gene_3_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	gene	25053	27293	.	-	0	ID=GTH_SGN_E_tom_gene_4
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	mRNA	25053	27293	.	-	0	ID=GTH_SGN_E_tom_gene_4_AGS_1;Parent=GTH_SGN_E_tom_gene_4
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	exon	27226	27293	0.956	-	0	ID=GTH_SGN_E_tom_exon_11;Parent=GTH_SGN_E_tom_gene_4_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	exon	26732	26980	0.992	-	0	ID=GTH_SGN_E_tom_exon_12;Parent=GTH_SGN_E_tom_gene_4_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	exon	25900	25975	0.987	-	0	ID=GTH_SGN_E_tom_exon_13;Parent=GTH_SGN_E_tom_gene_4_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	exon	25053	25191	0.978	-	0	ID=GTH_SGN_E_tom_exon_14;Parent=GTH_SGN_E_tom_gene_4_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	gene	29896	30394	.	-	0	ID=GTH_SGN_E_tom_gene_5
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	mRNA	29896	30394	.	-	0	ID=GTH_SGN_E_tom_gene_5_AGS_1;Parent=GTH_SGN_E_tom_gene_5
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	exon	29896	30394	0.992	-	0	ID=GTH_SGN_E_tom_exon_15;Parent=GTH_SGN_E_tom_gene_5_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	gene	30747	35293	.	+	0	ID=GTH_SGN_E_tom_gene_6
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	mRNA	30747	35293	.	+	0	ID=GTH_SGN_E_tom_gene_6_AGS_1;Parent=GTH_SGN_E_tom_gene_6
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	exon	30747	30952	1.000	+	0	ID=GTH_SGN_E_tom_exon_16;Parent=GTH_SGN_E_tom_gene_6_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	exon	31041	31093	1.000	+	0	ID=GTH_SGN_E_tom_exon_17;Parent=GTH_SGN_E_tom_gene_6_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	exon	31677	31777	0.990	+	0	ID=GTH_SGN_E_tom_exon_18;Parent=GTH_SGN_E_tom_gene_6_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	exon	34906	35293	1.000	+	0	ID=GTH_SGN_E_tom_exon_19;Parent=GTH_SGN_E_tom_gene_6_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	gene	42861	43669	.	+	0	ID=GTH_SGN_E_tom_gene_7
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	mRNA	42861	43669	.	+	0	ID=GTH_SGN_E_tom_gene_7_AGS_1;Parent=GTH_SGN_E_tom_gene_7
C09SLe0019J03.3	GenomeThreader_SGN_E_tomato	exon	42861	43669	0.952	+	0	ID=GTH_SGN_E_tom_exon_20;Parent=GTH_SGN_E_tom_gene_7_AGS_1
C09SLe0019J03.3	AUGUSTUS_tom_cdna	gene	9069	12615	1	-	.	ID=g1_1
C09SLe0019J03.3	AUGUSTUS_tom_cdna	transcript	9069	12615	.	-	.	ID=g1.t1_1;Parent=g1_1
C09SLe0019J03.3	AUGUSTUS_tom_cdna	stop_codon	9069	9071	.	-	0	Parent=g1.t1_1
C09SLe0019J03.3	AUGUSTUS_tom_cdna	CDS	9069	9263	.	-	0	ID=g1.t1.cds_1;Parent=g1.t1_1
C09SLe0019J03.3	AUGUSTUS_tom_cdna	CDS	11803	12615	.	-	0	ID=g1.t1.cds_2;Parent=g1.t1_1
C09SLe0019J03.3	AUGUSTUS_tom_cdna	start_codon	12613	12615	.	-	0	Parent=g1.t1_1
C09SLe0019J03.3	AUGUSTUS_tom_cdna	gene	17052	22655	1	+	.	ID=g2_1
C09SLe0019J03.3	AUGUSTUS_tom_cdna	transcript	17052	22655	.	+	.	ID=g2.t1_1;Parent=g2_1
C09SLe0019J03.3	AUGUSTUS_tom_cdna	start_codon	17052	17054	.	+	0	Parent=g2.t1_1
C09SLe0019J03.3	AUGUSTUS_tom_cdna	CDS	17052	17192	.	+	0	ID=g2.t1.cds_1;Parent=g2.t1_1
C09SLe0019J03.3	AUGUSTUS_tom_cdna	CDS	17470	17673	.	+	0	ID=g2.t1.cds_2;Parent=g2.t1_1
C09SLe0019J03.3	AUGUSTUS_tom_cdna	CDS	18747	18907	.	+	0	ID=g2.t1.cds_3;Parent=g2.t1_1
C09SLe0019J03.3	AUGUSTUS_tom_cdna	CDS	19628	19813	.	+	1	ID=g2.t1.cds_4;Parent=g2.t1_1
C09SLe0019J03.3	AUGUSTUS_tom_cdna	CDS	20460	20688	.	+	1	ID=g2.t1.cds_5;Parent=g2.t1_1
C09SLe0019J03.3	AUGUSTUS_tom_cdna	CDS	21645	21844	.	+	0	ID=g2.t1.cds_6;Parent=g2.t1_1
C09SLe0019J03.3	AUGUSTUS_tom_cdna	CDS	22222	22356	.	+	1	ID=g2.t1.cds_7;Parent=g2.t1_1
C09SLe0019J03.3	AUGUSTUS_tom_cdna	CDS	22472	22655	.	+	1	ID=g2.t1.cds_8;Parent=g2.t1_1
C09SLe0019J03.3	AUGUSTUS_tom_cdna	stop_codon	22653	22655	.	+	0	Parent=g2.t1_1
C09SLe0019J03.3	AUGUSTUS_tom_cdna	gene	23919	29657	1	-	.	ID=g3_1
C09SLe0019J03.3	AUGUSTUS_tom_cdna	transcript	23919	29657	.	-	.	ID=g3.t1_1;Parent=g3_1
C09SLe0019J03.3	AUGUSTUS_tom_cdna	stop_codon	23919	23921	.	-	0	Parent=g3.t1_1
C09SLe0019J03.3	AUGUSTUS_tom_cdna	CDS	23919	24152	.	-	0	ID=g3.t1.cds_1;Parent=g3.t1_1
C09SLe0019J03.3	AUGUSTUS_tom_cdna	CDS	24349	24447	.	-	0	ID=g3.t1.cds_2;Parent=g3.t1_1
C09SLe0019J03.3	AUGUSTUS_tom_cdna	CDS	25013	25191	.	-	2	ID=g3.t1.cds_3;Parent=g3.t1_1
C09SLe0019J03.3	AUGUSTUS_tom_cdna	CDS	25900	25975	.	-	0	ID=g3.t1.cds_4;Parent=g3.t1_1
C09SLe0019J03.3	AUGUSTUS_tom_cdna	CDS	26732	26980	.	-	0	ID=g3.t1.cds_5;Parent=g3.t1_1
C09SLe0019J03.3	AUGUSTUS_tom_cdna	CDS	27226	27293	.	-	2	ID=g3.t1.cds_6;Parent=g3.t1_1
C09SLe0019J03.3	AUGUSTUS_tom_cdna	CDS	27744	27973	.	-	1	ID=g3.t1.cds_7;Parent=g3.t1_1
C09SLe0019J03.3	AUGUSTUS_tom_cdna	CDS	29653	29657	.	-	0	ID=g3.t1.cds_8;Parent=g3.t1_1
C09SLe0019J03.3	AUGUSTUS_tom_cdna	start_codon	29655	29657	.	-	0	Parent=g3.t1_1
C09SLe0019J03.3	AUGUSTUS_tom_cdna	gene	30880	34996	1	+	.	ID=g4_1
C09SLe0019J03.3	AUGUSTUS_tom_cdna	transcript	30880	34996	.	+	.	ID=g4.t1_1;Parent=g4_1
C09SLe0019J03.3	AUGUSTUS_tom_cdna	start_codon	30880	30882	.	+	0	Parent=g4.t1_1
C09SLe0019J03.3	AUGUSTUS_tom_cdna	CDS	30880	30952	.	+	0	ID=g4.t1.cds_1;Parent=g4.t1_1
C09SLe0019J03.3	AUGUSTUS_tom_cdna	CDS	31041	31093	.	+	2	ID=g4.t1.cds_2;Parent=g4.t1_1
C09SLe0019J03.3	AUGUSTUS_tom_cdna	CDS	31677	31777	.	+	0	ID=g4.t1.cds_3;Parent=g4.t1_1
C09SLe0019J03.3	AUGUSTUS_tom_cdna	CDS	34906	34996	.	+	1	ID=g4.t1.cds_4;Parent=g4.t1_1
C09SLe0019J03.3	AUGUSTUS_tom_cdna	stop_codon	34994	34996	.	+	0	Parent=g4.t1_1
C09SLe0019J03.3	AUGUSTUS_tom_cdna	gene	36266	37387	1	-	.	ID=g5_1
C09SLe0019J03.3	AUGUSTUS_tom_cdna	transcript	36266	37387	.	-	.	ID=g5.t1_1;Parent=g5_1
C09SLe0019J03.3	AUGUSTUS_tom_cdna	stop_codon	36266	36268	.	-	0	Parent=g5.t1_1
C09SLe0019J03.3	AUGUSTUS_tom_cdna	CDS	36266	37387	.	-	0	ID=g5.t1.cds_1;Parent=g5.t1_1
C09SLe0019J03.3	AUGUSTUS_tom_cdna	start_codon	37385	37387	.	-	0	Parent=g5.t1_1
C09SLe0019J03.3	AUGUSTUS_tom_cdna	gene	39059	44036	1	+	.	ID=g6_1
C09SLe0019J03.3	AUGUSTUS_tom_cdna	transcript	39059	44036	.	+	.	ID=g6.t1_1;Parent=g6_1
C09SLe0019J03.3	AUGUSTUS_tom_cdna	start_codon	39059	39061	.	+	0	Parent=g6.t1_1
C09SLe0019J03.3	AUGUSTUS_tom_cdna	CDS	39059	39130	.	+	0	ID=g6.t1.cds_1;Parent=g6.t1_1
C09SLe0019J03.3	AUGUSTUS_tom_cdna	CDS	40610	40800	.	+	0	ID=g6.t1.cds_2;Parent=g6.t1_1
C09SLe0019J03.3	AUGUSTUS_tom_cdna	CDS	43968	44036	.	+	1	ID=g6.t1.cds_3;Parent=g6.t1_1
C09SLe0019J03.3	AUGUSTUS_ab_initio	gene	9069	12615	1	-	.	ID=g1_2
C09SLe0019J03.3	AUGUSTUS_ab_initio	transcript	9069	12615	.	-	.	ID=g1.t1_2;Parent=g1_2
C09SLe0019J03.3	AUGUSTUS_ab_initio	stop_codon	9069	9071	.	-	0	Parent=g1.t1_2
C09SLe0019J03.3	AUGUSTUS_ab_initio	CDS	9069	9263	.	-	0	ID=g1.t1.cds_3;Parent=g1.t1_2
C09SLe0019J03.3	AUGUSTUS_ab_initio	CDS	11803	12615	.	-	0	ID=g1.t1.cds_4;Parent=g1.t1_2
C09SLe0019J03.3	AUGUSTUS_ab_initio	start_codon	12613	12615	.	-	0	Parent=g1.t1_2
C09SLe0019J03.3	AUGUSTUS_ab_initio	gene	23919	29657	1	-	.	ID=g2_2
C09SLe0019J03.3	AUGUSTUS_ab_initio	transcript	23919	29657	.	-	.	ID=g2.t1_2;Parent=g2_2
C09SLe0019J03.3	AUGUSTUS_ab_initio	stop_codon	23919	23921	.	-	0	Parent=g2.t1_2
C09SLe0019J03.3	AUGUSTUS_ab_initio	CDS	23919	24152	.	-	0	ID=g2.t1.cds_9;Parent=g2.t1_2
C09SLe0019J03.3	AUGUSTUS_ab_initio	CDS	24349	24447	.	-	0	ID=g2.t1.cds_10;Parent=g2.t1_2
C09SLe0019J03.3	AUGUSTUS_ab_initio	CDS	24795	24879	.	-	1	ID=g2.t1.cds_11;Parent=g2.t1_2
C09SLe0019J03.3	AUGUSTUS_ab_initio	CDS	29653	29657	.	-	0	ID=g2.t1.cds_12;Parent=g2.t1_2
C09SLe0019J03.3	AUGUSTUS_ab_initio	start_codon	29655	29657	.	-	0	Parent=g2.t1_2
C09SLe0019J03.3	AUGUSTUS_ab_initio	gene	36266	37387	1	-	.	ID=g3_2
C09SLe0019J03.3	AUGUSTUS_ab_initio	transcript	36266	37387	.	-	.	ID=g3.t1_2;Parent=g3_2
C09SLe0019J03.3	AUGUSTUS_ab_initio	stop_codon	36266	36268	.	-	0	Parent=g3.t1_2
C09SLe0019J03.3	AUGUSTUS_ab_initio	CDS	36266	37387	.	-	0	ID=g3.t1.cds_9;Parent=g3.t1_2
C09SLe0019J03.3	AUGUSTUS_ab_initio	start_codon	37385	37387	.	-	0	Parent=g3.t1_2
C09SLe0019J03.3	AUGUSTUS_tom_ugs	gene	9069	12615	1	-	.	ID=g1_3
C09SLe0019J03.3	AUGUSTUS_tom_ugs	transcript	9069	12615	.	-	.	ID=g1.t1_3;Parent=g1_3
C09SLe0019J03.3	AUGUSTUS_tom_ugs	stop_codon	9069	9071	.	-	0	Parent=g1.t1_3
C09SLe0019J03.3	AUGUSTUS_tom_ugs	CDS	9069	9263	.	-	0	ID=g1.t1.cds_5;Parent=g1.t1_3
C09SLe0019J03.3	AUGUSTUS_tom_ugs	CDS	11803	12615	.	-	0	ID=g1.t1.cds_6;Parent=g1.t1_3
C09SLe0019J03.3	AUGUSTUS_tom_ugs	start_codon	12613	12615	.	-	0	Parent=g1.t1_3
C09SLe0019J03.3	AUGUSTUS_tom_ugs	gene	17052	22655	1	+	.	ID=g2_3
C09SLe0019J03.3	AUGUSTUS_tom_ugs	transcript	17052	22655	.	+	.	ID=g2.t1_3;Parent=g2_3
C09SLe0019J03.3	AUGUSTUS_tom_ugs	start_codon	17052	17054	.	+	0	Parent=g2.t1_3
C09SLe0019J03.3	AUGUSTUS_tom_ugs	CDS	17052	17192	.	+	0	ID=g2.t1.cds_13;Parent=g2.t1_3
C09SLe0019J03.3	AUGUSTUS_tom_ugs	CDS	17470	17673	.	+	0	ID=g2.t1.cds_14;Parent=g2.t1_3
C09SLe0019J03.3	AUGUSTUS_tom_ugs	CDS	18747	18907	.	+	0	ID=g2.t1.cds_15;Parent=g2.t1_3
C09SLe0019J03.3	AUGUSTUS_tom_ugs	CDS	19628	19813	.	+	1	ID=g2.t1.cds_16;Parent=g2.t1_3
C09SLe0019J03.3	AUGUSTUS_tom_ugs	CDS	20460	20688	.	+	1	ID=g2.t1.cds_17;Parent=g2.t1_3
C09SLe0019J03.3	AUGUSTUS_tom_ugs	CDS	21645	21844	.	+	0	ID=g2.t1.cds_18;Parent=g2.t1_3
C09SLe0019J03.3	AUGUSTUS_tom_ugs	CDS	22222	22356	.	+	1	ID=g2.t1.cds_19;Parent=g2.t1_3
C09SLe0019J03.3	AUGUSTUS_tom_ugs	CDS	22472	22655	.	+	1	ID=g2.t1.cds_20;Parent=g2.t1_3
C09SLe0019J03.3	AUGUSTUS_tom_ugs	stop_codon	22653	22655	.	+	0	Parent=g2.t1_3
C09SLe0019J03.3	AUGUSTUS_tom_ugs	gene	23919	29657	1	-	.	ID=g3_3
C09SLe0019J03.3	AUGUSTUS_tom_ugs	transcript	23919	29657	.	-	.	ID=g3.t1_3;Parent=g3_3
C09SLe0019J03.3	AUGUSTUS_tom_ugs	stop_codon	23919	23921	.	-	0	Parent=g3.t1_3
C09SLe0019J03.3	AUGUSTUS_tom_ugs	CDS	23919	24152	.	-	0	ID=g3.t1.cds_10;Parent=g3.t1_3
C09SLe0019J03.3	AUGUSTUS_tom_ugs	CDS	24349	24447	.	-	0	ID=g3.t1.cds_11;Parent=g3.t1_3
C09SLe0019J03.3	AUGUSTUS_tom_ugs	CDS	25013	25191	.	-	2	ID=g3.t1.cds_12;Parent=g3.t1_3
C09SLe0019J03.3	AUGUSTUS_tom_ugs	CDS	25900	25975	.	-	0	ID=g3.t1.cds_13;Parent=g3.t1_3
C09SLe0019J03.3	AUGUSTUS_tom_ugs	CDS	26732	26980	.	-	0	ID=g3.t1.cds_14;Parent=g3.t1_3
C09SLe0019J03.3	AUGUSTUS_tom_ugs	CDS	27226	27293	.	-	2	ID=g3.t1.cds_15;Parent=g3.t1_3
C09SLe0019J03.3	AUGUSTUS_tom_ugs	CDS	27744	27973	.	-	1	ID=g3.t1.cds_16;Parent=g3.t1_3
C09SLe0019J03.3	AUGUSTUS_tom_ugs	CDS	29653	29657	.	-	0	ID=g3.t1.cds_17;Parent=g3.t1_3
C09SLe0019J03.3	AUGUSTUS_tom_ugs	start_codon	29655	29657	.	-	0	Parent=g3.t1_3
C09SLe0019J03.3	AUGUSTUS_tom_ugs	gene	30880	34996	1	+	.	ID=g4_2
C09SLe0019J03.3	AUGUSTUS_tom_ugs	transcript	30880	34996	.	+	.	ID=g4.t1_2;Parent=g4_2
C09SLe0019J03.3	AUGUSTUS_tom_ugs	start_codon	30880	30882	.	+	0	Parent=g4.t1_2
C09SLe0019J03.3	AUGUSTUS_tom_ugs	CDS	30880	30952	.	+	0	ID=g4.t1.cds_5;Parent=g4.t1_2
C09SLe0019J03.3	AUGUSTUS_tom_ugs	CDS	31041	31093	.	+	2	ID=g4.t1.cds_6;Parent=g4.t1_2
C09SLe0019J03.3	AUGUSTUS_tom_ugs	CDS	31677	31777	.	+	0	ID=g4.t1.cds_7;Parent=g4.t1_2
C09SLe0019J03.3	AUGUSTUS_tom_ugs	CDS	34906	34996	.	+	1	ID=g4.t1.cds_8;Parent=g4.t1_2
C09SLe0019J03.3	AUGUSTUS_tom_ugs	stop_codon	34994	34996	.	+	0	Parent=g4.t1_2
C09SLe0019J03.3	AUGUSTUS_tom_ugs	gene	36266	37387	1	-	.	ID=g5_2
C09SLe0019J03.3	AUGUSTUS_tom_ugs	transcript	36266	37387	.	-	.	ID=g5.t1_2;Parent=g5_2
C09SLe0019J03.3	AUGUSTUS_tom_ugs	stop_codon	36266	36268	.	-	0	Parent=g5.t1_2
C09SLe0019J03.3	AUGUSTUS_tom_ugs	CDS	36266	37387	.	-	0	ID=g5.t1.cds_2;Parent=g5.t1_2
C09SLe0019J03.3	AUGUSTUS_tom_ugs	start_codon	37385	37387	.	-	0	Parent=g5.t1_2
C09SLe0019J03.3	AUGUSTUS_tom_ugs	gene	39059	44036	1	+	.	ID=g6_2
C09SLe0019J03.3	AUGUSTUS_tom_ugs	transcript	39059	44036	.	+	.	ID=g6.t1_2;Parent=g6_2
C09SLe0019J03.3	AUGUSTUS_tom_ugs	start_codon	39059	39061	.	+	0	Parent=g6.t1_2
C09SLe0019J03.3	AUGUSTUS_tom_ugs	CDS	39059	39130	.	+	0	ID=g6.t1.cds_4;Parent=g6.t1_2
C09SLe0019J03.3	AUGUSTUS_tom_ugs	CDS	40610	40800	.	+	0	ID=g6.t1.cds_5;Parent=g6.t1_2
C09SLe0019J03.3	AUGUSTUS_tom_ugs	CDS	43968	44036	.	+	1	ID=g6.t1.cds_6;Parent=g6.t1_2
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	match	17055	19695	0.995	+	0	ID=SGN-U346714_alignment_1;Target=SGN-U346714 1 572 +
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	match_part	17055	17192	0.986	+	0	ID=GTH_SGN_U_tom_match_part_1;Target=SGN-U346714 1 139 +;Parent=SGN-U346714_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	match_part	17470	17673	1.000	+	0	ID=GTH_SGN_U_tom_match_part_2;Target=SGN-U346714 140 343 +;Parent=SGN-U346714_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	match_part	18747	18907	1.000	+	0	ID=GTH_SGN_U_tom_match_part_3;Target=SGN-U346714 344 504 +;Parent=SGN-U346714_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	match_part	19628	19695	0.985	+	0	ID=GTH_SGN_U_tom_match_part_4;Target=SGN-U346714 505 572 +;Parent=SGN-U346714_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	match	20617	22823	0.999	+	0	ID=SGN-U330971_alignment_1;Target=SGN-U330971 1 759 +
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	match_part	20617	20688	1.000	+	0	ID=GTH_SGN_U_tom_match_part_5;Target=SGN-U330971 1 72 +;Parent=SGN-U330971_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	match_part	21645	21844	1.000	+	0	ID=GTH_SGN_U_tom_match_part_6;Target=SGN-U330971 73 272 +;Parent=SGN-U330971_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	match_part	22222	22356	1.000	+	0	ID=GTH_SGN_U_tom_match_part_7;Target=SGN-U330971 273 407 +;Parent=SGN-U330971_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	match_part	22472	22823	0.997	+	0	ID=GTH_SGN_U_tom_match_part_8;Target=SGN-U330971 408 759 +;Parent=SGN-U330971_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	match	23123	23748	0.997	-	0	ID=SGN-U329517_alignment_1;Target=SGN-U329517 1 373 +
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	match_part	23653	23748	1.000	-	0	ID=GTH_SGN_U_tom_match_part_9;Target=SGN-U329517 1 96 +;Parent=SGN-U329517_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	match_part	23123	23399	0.996	-	0	ID=GTH_SGN_U_tom_match_part_10;Target=SGN-U329517 97 373 +;Parent=SGN-U329517_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	match	25053	27293	0.983	-	0	ID=SGN-U342983_alignment_1;Target=SGN-U342983 28 560 +
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	match_part	27226	27293	0.956	-	0	ID=GTH_SGN_U_tom_match_part_11;Target=SGN-U342983 28 96 +;Parent=SGN-U342983_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	match_part	26732	26980	0.992	-	0	ID=GTH_SGN_U_tom_match_part_12;Target=SGN-U342983 97 345 +;Parent=SGN-U342983_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	match_part	25900	25975	0.987	-	0	ID=GTH_SGN_U_tom_match_part_13;Target=SGN-U342983 346 421 +;Parent=SGN-U342983_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	match_part	25053	25191	0.978	-	0	ID=GTH_SGN_U_tom_match_part_14;Target=SGN-U342983 422 560 +;Parent=SGN-U342983_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	match	29896	30394	0.992	-	0	ID=SGN-U340760_alignment_1;Target=SGN-U340760 1 499 +
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	match_part	29896	30394	0.992	-	0	ID=GTH_SGN_U_tom_match_part_15;Target=SGN-U340760 1 499 +;Parent=SGN-U340760_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	match	30747	35285	0.999	+	0	ID=SGN-U319657_alignment_1;Target=SGN-U319657 1 740 +
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	match_part	30747	30952	1.000	+	0	ID=GTH_SGN_U_tom_match_part_16;Target=SGN-U319657 1 206 +;Parent=SGN-U319657_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	match_part	31041	31093	1.000	+	0	ID=GTH_SGN_U_tom_match_part_17;Target=SGN-U319657 207 259 +;Parent=SGN-U319657_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	match_part	31677	31777	0.990	+	0	ID=GTH_SGN_U_tom_match_part_18;Target=SGN-U319657 260 360 +;Parent=SGN-U319657_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	match_part	34906	35285	1.000	+	0	ID=GTH_SGN_U_tom_match_part_19;Target=SGN-U319657 361 740 +;Parent=SGN-U319657_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	gene	17055	19695	.	+	0	ID=GTH_SGN_U_tom_gene_1
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	mRNA	17055	19695	.	+	0	ID=GTH_SGN_U_tom_gene_1_AGS_1;Parent=GTH_SGN_U_tom_gene_1
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	exon	17055	17192	0.986	+	0	ID=GTH_SGN_U_tom_exon_1;Parent=GTH_SGN_U_tom_gene_1_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	exon	17470	17673	1.000	+	0	ID=GTH_SGN_U_tom_exon_2;Parent=GTH_SGN_U_tom_gene_1_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	exon	18747	18907	1.000	+	0	ID=GTH_SGN_U_tom_exon_3;Parent=GTH_SGN_U_tom_gene_1_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	exon	19628	19695	0.985	+	0	ID=GTH_SGN_U_tom_exon_4;Parent=GTH_SGN_U_tom_gene_1_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	gene	20617	22823	.	+	0	ID=GTH_SGN_U_tom_gene_2
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	mRNA	20617	22823	.	+	0	ID=GTH_SGN_U_tom_gene_2_AGS_1;Parent=GTH_SGN_U_tom_gene_2
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	exon	20617	20688	1.000	+	0	ID=GTH_SGN_U_tom_exon_5;Parent=GTH_SGN_U_tom_gene_2_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	exon	21645	21844	1.000	+	0	ID=GTH_SGN_U_tom_exon_6;Parent=GTH_SGN_U_tom_gene_2_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	exon	22222	22356	1.000	+	0	ID=GTH_SGN_U_tom_exon_7;Parent=GTH_SGN_U_tom_gene_2_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	exon	22472	22823	0.997	+	0	ID=GTH_SGN_U_tom_exon_8;Parent=GTH_SGN_U_tom_gene_2_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	gene	23123	23748	.	-	0	ID=GTH_SGN_U_tom_gene_3
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	mRNA	23123	23748	.	-	0	ID=GTH_SGN_U_tom_gene_3_AGS_1;Parent=GTH_SGN_U_tom_gene_3
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	exon	23653	23748	1.000	-	0	ID=GTH_SGN_U_tom_exon_9;Parent=GTH_SGN_U_tom_gene_3_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	exon	23123	23399	0.996	-	0	ID=GTH_SGN_U_tom_exon_10;Parent=GTH_SGN_U_tom_gene_3_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	gene	25053	27293	.	-	0	ID=GTH_SGN_U_tom_gene_4
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	mRNA	25053	27293	.	-	0	ID=GTH_SGN_U_tom_gene_4_AGS_1;Parent=GTH_SGN_U_tom_gene_4
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	exon	27226	27293	0.956	-	0	ID=GTH_SGN_U_tom_exon_11;Parent=GTH_SGN_U_tom_gene_4_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	exon	26732	26980	0.992	-	0	ID=GTH_SGN_U_tom_exon_12;Parent=GTH_SGN_U_tom_gene_4_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	exon	25900	25975	0.987	-	0	ID=GTH_SGN_U_tom_exon_13;Parent=GTH_SGN_U_tom_gene_4_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	exon	25053	25191	0.978	-	0	ID=GTH_SGN_U_tom_exon_14;Parent=GTH_SGN_U_tom_gene_4_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	gene	29896	30394	.	-	0	ID=GTH_SGN_U_tom_gene_5
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	mRNA	29896	30394	.	-	0	ID=GTH_SGN_U_tom_gene_5_AGS_1;Parent=GTH_SGN_U_tom_gene_5
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	exon	29896	30394	0.992	-	0	ID=GTH_SGN_U_tom_exon_15;Parent=GTH_SGN_U_tom_gene_5_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	gene	30747	35285	.	+	0	ID=GTH_SGN_U_tom_gene_6
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	mRNA	30747	35285	.	+	0	ID=GTH_SGN_U_tom_gene_6_AGS_1;Parent=GTH_SGN_U_tom_gene_6
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	exon	30747	30952	1.000	+	0	ID=GTH_SGN_U_tom_exon_16;Parent=GTH_SGN_U_tom_gene_6_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	exon	31041	31093	1.000	+	0	ID=GTH_SGN_U_tom_exon_17;Parent=GTH_SGN_U_tom_gene_6_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	exon	31677	31777	0.990	+	0	ID=GTH_SGN_U_tom_exon_18;Parent=GTH_SGN_U_tom_gene_6_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_U_tomato	exon	34906	35285	1.000	+	0	ID=GTH_SGN_U_tom_exon_19;Parent=GTH_SGN_U_tom_gene_6_AGS_1
C09SLe0019J03.3	GenomeThreader_SGN_markers	match	30747	35260	0.996	+	0	ID=SGN-M8558_alignment_1;Target=SGN-M8558 1 715 +
C09SLe0019J03.3	GenomeThreader_SGN_markers	match_part	30747	30952	1.000	+	0	ID=GTH_SGN_markers_match_part_1;Target=SGN-M8558 1 206 +;Parent=SGN-M8558_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_markers	match_part	31041	31093	1.000	+	0	ID=GTH_SGN_markers_match_part_2;Target=SGN-M8558 207 259 +;Parent=SGN-M8558_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_markers	match_part	31677	31777	0.990	+	0	ID=GTH_SGN_markers_match_part_3;Target=SGN-M8558 260 360 +;Parent=SGN-M8558_alignment_1
C09SLe0019J03.3	GenomeThreader_SGN_markers	match_part	34906	35260	0.994	+	0	ID=GTH_SGN_markers_match_part_4;Target=SGN-M8558 361 715 +;Parent=SGN-M8558_alignment_1
C09SLe0019J03.3	AUGUSTUS_tom_pot_cdna	gene	9069	12615	1	-	.	ID=g1_4
C09SLe0019J03.3	AUGUSTUS_tom_pot_cdna	transcript	9069	12615	.	-	.	ID=g1.t1_4;Parent=g1_4
C09SLe0019J03.3	AUGUSTUS_tom_pot_cdna	stop_codon	9069	9071	.	-	0	Parent=g1.t1_4
C09SLe0019J03.3	AUGUSTUS_tom_pot_cdna	CDS	9069	9263	.	-	0	ID=g1.t1.cds_7;Parent=g1.t1_4
C09SLe0019J03.3	AUGUSTUS_tom_pot_cdna	CDS	11803	12615	.	-	0	ID=g1.t1.cds_8;Parent=g1.t1_4
C09SLe0019J03.3	AUGUSTUS_tom_pot_cdna	start_codon	12613	12615	.	-	0	Parent=g1.t1_4
C09SLe0019J03.3	AUGUSTUS_tom_pot_cdna	gene	17052	22655	1	+	.	ID=g2_4
C09SLe0019J03.3	AUGUSTUS_tom_pot_cdna	transcript	17052	22655	.	+	.	ID=g2.t1_4;Parent=g2_4
C09SLe0019J03.3	AUGUSTUS_tom_pot_cdna	start_codon	17052	17054	.	+	0	Parent=g2.t1_4
C09SLe0019J03.3	AUGUSTUS_tom_pot_cdna	CDS	17052	17192	.	+	0	ID=g2.t1.cds_21;Parent=g2.t1_4
C09SLe0019J03.3	AUGUSTUS_tom_pot_cdna	CDS	17470	17673	.	+	0	ID=g2.t1.cds_22;Parent=g2.t1_4
C09SLe0019J03.3	AUGUSTUS_tom_pot_cdna	CDS	18747	18907	.	+	0	ID=g2.t1.cds_23;Parent=g2.t1_4
C09SLe0019J03.3	AUGUSTUS_tom_pot_cdna	CDS	19628	19813	.	+	1	ID=g2.t1.cds_24;Parent=g2.t1_4
C09SLe0019J03.3	AUGUSTUS_tom_pot_cdna	CDS	20460	20688	.	+	1	ID=g2.t1.cds_25;Parent=g2.t1_4
C09SLe0019J03.3	AUGUSTUS_tom_pot_cdna	CDS	21645	21844	.	+	0	ID=g2.t1.cds_26;Parent=g2.t1_4
C09SLe0019J03.3	AUGUSTUS_tom_pot_cdna	CDS	22222	22356	.	+	1	ID=g2.t1.cds_27;Parent=g2.t1_4
C09SLe0019J03.3	AUGUSTUS_tom_pot_cdna	CDS	22472	22655	.	+	1	ID=g2.t1.cds_28;Parent=g2.t1_4
C09SLe0019J03.3	AUGUSTUS_tom_pot_cdna	stop_codon	22653	22655	.	+	0	Parent=g2.t1_4
C09SLe0019J03.3	AUGUSTUS_tom_pot_cdna	gene	23919	29657	1	-	.	ID=g3_4
C09SLe0019J03.3	AUGUSTUS_tom_pot_cdna	transcript	23919	29657	.	-	.	ID=g3.t1_4;Parent=g3_4
C09SLe0019J03.3	AUGUSTUS_tom_pot_cdna	stop_codon	23919	23921	.	-	0	Parent=g3.t1_4
C09SLe0019J03.3	AUGUSTUS_tom_pot_cdna	CDS	23919	24152	.	-	0	ID=g3.t1.cds_18;Parent=g3.t1_4
C09SLe0019J03.3	AUGUSTUS_tom_pot_cdna	CDS	24349	24447	.	-	0	ID=g3.t1.cds_19;Parent=g3.t1_4
C09SLe0019J03.3	AUGUSTUS_tom_pot_cdna	CDS	25013	25191	.	-	2	ID=g3.t1.cds_20;Parent=g3.t1_4
C09SLe0019J03.3	AUGUSTUS_tom_pot_cdna	CDS	25900	25975	.	-	0	ID=g3.t1.cds_21;Parent=g3.t1_4
C09SLe0019J03.3	AUGUSTUS_tom_pot_cdna	CDS	26732	26980	.	-	0	ID=g3.t1.cds_22;Parent=g3.t1_4
C09SLe0019J03.3	AUGUSTUS_tom_pot_cdna	CDS	27226	27293	.	-	2	ID=g3.t1.cds_23;Parent=g3.t1_4
C09SLe0019J03.3	AUGUSTUS_tom_pot_cdna	CDS	27744	27973	.	-	1	ID=g3.t1.cds_24;Parent=g3.t1_4
C09SLe0019J03.3	AUGUSTUS_tom_pot_cdna	CDS	29653	29657	.	-	0	ID=g3.t1.cds_25;Parent=g3.t1_4
C09SLe0019J03.3	AUGUSTUS_tom_pot_cdna	start_codon	29655	29657	.	-	0	Parent=g3.t1_4
C09SLe0019J03.3	AUGUSTUS_tom_pot_cdna	gene	30728	34996	1	+	.	ID=g4_3
C09SLe0019J03.3	AUGUSTUS_tom_pot_cdna	transcript	30728	34996	.	+	.	ID=g4.t1_3;Parent=g4_3
C09SLe0019J03.3	AUGUSTUS_tom_pot_cdna	start_codon	30728	30730	.	+	0	Parent=g4.t1_3
C09SLe0019J03.3	AUGUSTUS_tom_pot_cdna	CDS	30728	30734	.	+	0	ID=g4.t1.cds_9;Parent=g4.t1_3
C09SLe0019J03.3	AUGUSTUS_tom_pot_cdna	CDS	30788	30952	.	+	2	ID=g4.t1.cds_10;Parent=g4.t1_3
C09SLe0019J03.3	AUGUSTUS_tom_pot_cdna	CDS	31041	31093	.	+	2	ID=g4.t1.cds_11;Parent=g4.t1_3
C09SLe0019J03.3	AUGUSTUS_tom_pot_cdna	CDS	31677	31777	.	+	0	ID=g4.t1.cds_12;Parent=g4.t1_3
C09SLe0019J03.3	AUGUSTUS_tom_pot_cdna	CDS	34906	34996	.	+	1	ID=g4.t1.cds_13;Parent=g4.t1_3
C09SLe0019J03.3	AUGUSTUS_tom_pot_cdna	stop_codon	34994	34996	.	+	0	Parent=g4.t1_3
C09SLe0019J03.3	AUGUSTUS_tom_pot_cdna	gene	36266	37387	1	-	.	ID=g5_3
C09SLe0019J03.3	AUGUSTUS_tom_pot_cdna	transcript	36266	37387	.	-	.	ID=g5.t1_3;Parent=g5_3
C09SLe0019J03.3	AUGUSTUS_tom_pot_cdna	stop_codon	36266	36268	.	-	0	Parent=g5.t1_3
C09SLe0019J03.3	AUGUSTUS_tom_pot_cdna	CDS	36266	37387	.	-	0	ID=g5.t1.cds_3;Parent=g5.t1_3
C09SLe0019J03.3	AUGUSTUS_tom_pot_cdna	start_codon	37385	37387	.	-	0	Parent=g5.t1_3
C09SLe0019J03.3	AUGUSTUS_tom_pot_cdna	gene	39059	44036	1	+	.	ID=g6_3
C09SLe0019J03.3	AUGUSTUS_tom_pot_cdna	transcript	39059	44036	.	+	.	ID=g6.t1_3;Parent=g6_3
C09SLe0019J03.3	AUGUSTUS_tom_pot_cdna	start_codon	39059	39061	.	+	0	Parent=g6.t1_3
C09SLe0019J03.3	AUGUSTUS_tom_pot_cdna	CDS	39059	39130	.	+	0	ID=g6.t1.cds_7;Parent=g6.t1_3
C09SLe0019J03.3	AUGUSTUS_tom_pot_cdna	CDS	40610	40800	.	+	0	ID=g6.t1.cds_8;Parent=g6.t1_3
C09SLe0019J03.3	AUGUSTUS_tom_pot_cdna	CDS	43968	44036	.	+	1	ID=g6.t1.cds_9;Parent=g6.t1_3
C09SLe0019J03.3	BLAST_ath_pep	match	22217	22354	59.3	+	0	ID=AT1G26370.1_fwd_alignment_1;blast_gaps=0;Target=AT1G26370.1 611 656 +;blast_percent_identity=60.87;blast_mismatches=18;blast_evalue=6e-25
C09SLe0019J03.3	BLAST_ath_pep	match	22464	22634	79.0	+	0	ID=AT1G26370.1_fwd_alignment_2;blast_gaps=0;Target=AT1G26370.1 655 711 +;blast_percent_identity=61.40;blast_mismatches=22;blast_evalue=6e-25
C09SLe0019J03.3	BLAST_ath_pep	match	16773	17195	172	+	0	ID=AT1G26370.1_fwd_alignment_3;blast_gaps=0;Target=AT1G26370.1 145 285 +;blast_percent_identity=61.70;blast_mismatches=54;blast_evalue=2e-41
C09SLe0019J03.3	BLAST_ath_pep	match	16300	16503	111	+	0	ID=AT1G26370.1_fwd_alignment_4;blast_gaps=0;Target=AT1G26370.1 73 140 +;blast_percent_identity=72.06;blast_mismatches=19;blast_evalue=3e-23
C09SLe0019J03.3	BLAST_ath_pep	match	19626	19814	103	+	0	ID=AT1G26370.1_fwd_alignment_5;blast_gaps=0;Target=AT1G26370.1 406 468 +;blast_percent_identity=74.60;blast_mismatches=16;blast_evalue=9e-21
C09SLe0019J03.3	BLAST_ath_pep	match	10093	10872	112	-	0	ID=AT1G48290.1_fwd_alignment_1;blast_gaps=2;Target=AT1G48290.1 164 407 +;blast_percent_identity=27.97;blast_mismatches=187;blast_evalue=2e-23
C09SLe0019J03.3	BLAST_ath_pep	match	27742	28023	59.3	-	0	ID=AT1G56190.1_fwd_alignment_1;blast_gaps=1;Target=AT1G56190.1 272 366 +;blast_percent_identity=37.89;blast_mismatches=58;blast_evalue=8e-22
C09SLe0019J03.3	BLAST_ath_pep	match	28133	28393	68.6	-	0	ID=AT1G56190.1_fwd_alignment_2;blast_gaps=0;Target=AT1G56190.1 184 270 +;blast_percent_identity=37.93;blast_mismatches=54;blast_evalue=8e-22
C09SLe0019J03.3	BLAST_ath_pep	match	36554	37402	177	-	0	ID=AT3G02160.1_fwd_alignment_1;blast_gaps=4;Target=AT3G02160.1 14 296 +;blast_percent_identity=36.70;blast_mismatches=174;blast_evalue=5e-43
C09SLe0019J03.3	BLAST_ath_pep	match	27742	28023	57.0	-	0	ID=AT3G12780.1_fwd_alignment_1;blast_gaps=1;Target=AT3G12780.1 275 369 +;blast_percent_identity=36.84;blast_mismatches=59;blast_evalue=8e-22
C09SLe0019J03.3	BLAST_ath_pep	match	28133	28417	70.9	-	0	ID=AT3G12780.1_fwd_alignment_2;blast_gaps=0;Target=AT3G12780.1 179 273 +;blast_percent_identity=37.89;blast_mismatches=59;blast_evalue=8e-22
C09SLe0019J03.3	BLAST_ath_pep	match	36269	37303	270	-	0	ID=AT4G34340.1_fwd_alignment_1;blast_gaps=8;Target=AT4G34340.1 25 353 +;blast_percent_identity=48.01;blast_mismatches=176;blast_evalue=8e-71
C09SLe0019J03.3	BLAST_ath_pep	match	36554	37387	164	-	0	ID=AT5G15570.1_fwd_alignment_1;blast_gaps=7;Target=AT5G15570.1 1 283 +;blast_percent_identity=36.82;blast_mismatches=169;blast_evalue=4e-39