<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-14 17:46:06"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLe0009I15-gLoy2/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09SLe0009I15-gLoy2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0009I15-gLoy2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341680" ref_strand="+" ref_description="SGN-U341680        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: RNase(evalue: 1e-27, score=126)">
      <seq>ataccctccttaaggcttgctatttaagaagggttcactgaggaagaaaatgctttatttcttcttgcggagttagaagcacttgatcaaaagaggttataagcccaacaaaaccttgaatgttatcaagctcgtctatcttgtgcttttaataagaaggtttgcttgaggtgctttcaagttggagatcaagttctctcggtaagaagacccatcattacttcgcacaagtctgggggcaaatttatctcaaagtgggatggaccatatgttgtacaagaagcatattcaaatggtgcttacaagcttgttgatgctgatggcttaaggatcggtcctattaatgccaaattcctaaagagatgctattgttgaagtgagatgatgctccttaaggtacgagcctaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0009I15-gLoy2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0009I15.1" temp_strand="+" temp_description="C09SLe0009I15.1  EU139073.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139073.1| upload_account_name:spain (1 - 94090)">
        <position start="14128" stop="15136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14428" g_stop="14836" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0009I15.1" gen_strand="+" ref_id="SGN-U341680" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0009I15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U341680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14428" e_stop="14836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACCCTCCTTAAGGCTTGCTATTCAAGAAGTGCTCACCTAGGAAGAAAATGCTTGATTGCTTCTTGCTGAGTTAGAAGCACTTGATGAAAAGAGGTTAGAAGCCCAACAAAACCTTGAATGTTATCTAGCTCGTCTATCTCGTGCTTTTAATAAAAAGGTTCGCTTGAGGTGCTTTCAAGTTGGAGATCAAGTTCTCGCGGTAAGAATACCAATCATTACTTTACACAAGTCTGGGGCCAAATTTACCTCAAAGTGGGGTGGACCATATGTCATACAAGAAGCATATTCAAATGGTGCTTACAAGCTTGTTGATGCTGATGGCTTAAGGATCGGTCCTATTAATGCCAAATTTCTAAAGAGATACTATCTTTGAAGGAAGATGATGCTCCTCAAGGTACGAGCCTAAA</genome_strand>
        <mrna_strand>ATACCCTCCTTAAGGCTTGCTATTTAAGAAGGGTTCACTGAGGAAGAAAATGCTTTATTTCTTCTTGCGGAGTTAGAAGCACTTGATCAAAAGAGGTTATAAGCCCAACAAAACCTTGAATGTTATCAAGCTCGTCTATCTTGTGCTTTTAATAAGAAGGTTTGCTTGAGGTGCTTTCAAGTTGGAGATCAAGTTCTCTCGGTAAGAAGACCCATCATTACTTCGCACAAGTCTGGGGGCAAATTTATCTCAAAGTGGGATGGACCATATGTTGTACAAGAAGCATATTCAAATGGTGCTTACAAGCTTGTTGATGCTGATGGCTTAAGGATCGGTCCTATTAATGCCAAATTCCTAAAGAGATGCTATTGTTGAAGTGAGATGATGCTCCTTAAGGTACGAGCCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0009I15-gLoy2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345321" ref_strand="+" ref_description="SGN-U345321        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT3G01410.1 | Symbol: None | RNase H domain-containing protein, low similarity to GAG-POL precursor (Oryza sativa (japonica cultivar-group)) GI:5902445; contains Pfam profile: PF00075 RNase H | chr3:153446-155606 REVERSE | Aliases: T13O15.5, T13O15_5 (evalue: 1e-06, score=50.4) genbank/nr: RNase(evalue: 8e-45, score=120)">
      <seq>aagcatcaaatgaccaagatgcgatggttgggtgcaatacttcgggtggctggtgaatgaaattcacatgaaattgacaagcatcacatttcctggcataatataagcaatctttcaccatggttggccagtaataccccatcctctttatgtggaaatgaagttttggtccagattgatgtgatccacataaagtgtgcttcttgcggggcttgaatcgtttcttcctctcccaaacatcgtaataacataccctcaaatgatcttctatataatgtatccttgtagtaaaggaaacgaggtgcacgacgacgtatgtcagttcttcttcttggattttctggaagtatcccataacataggtagtcaatgatgggttgtctccaatcttccttcgcatcttcaacaatggagacgatatgatcaagcttatttttaatatattcttcctcatttgacggtggtactatctatttttgacagacagttacttgcgtttgattaggaagggttaacgttgaagctagagtagccaatgcatcatctttcttattctctgttcgacgcacatgctgaagggttacatcaccaatccatcttatcaatttttaagcataatcatgataaggtcgcaattcaggcctttttacgtcataacttcctaagagttgattaatcaccaattgagagtcaccaaagacctataaatgtaattgtttcatgttaacggccatttcaagtccaagtatcagtgcttgatattcagcgacattattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0009I15-gLoy2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0009I15.1" temp_strand="-" temp_description="C09SLe0009I15.1  EU139073.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139073.1| upload_account_name:spain (1 - 94090)">
        <position start="17820" stop="16438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17520" g_stop="16738" g_length="783"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="778" r_length="778" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0009I15.1" gen_strand="-" ref_id="SGN-U345321" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0009I15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U345321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17520" e_stop="16738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCGTCAAATGGCCAAGATGCAATGGTTGGGTGCAATACTTCGGGTGGCTGATGAATGAAATTCGCATGAAATAGACAAGCATCGCATTTCCTGGCATAATATAAGCAATCATTCACCATGGTTTACCATTAATACCCCATCCTCTTTATGTGAAAATGAAGTTTTGGTCCAGATTGATGTGATCCACATACTCCTGAACGTGCTTCTTGCAGAGCTTGAGTCGCTTCTTCCTCTACCAAGCATTGTAATAACATACCCTCAAATGATCTTCAATATAATGTATCCTTGTAGTAAAGGAAACCAGGTGCACGACGCGTTATGTCAGTCCTTCTTCTTGGATTTTCTGGAAGTGTCCCATAACATAGGTAGTCAATGATGGGTTGTCTCCAATCTTCCTTCGCAGCTTCAACAATGGCGACGATATGATCAAGCTTATTTTCAATATATTCTTCCTCATTTGATGGTGGTACTATCCATTTTTTACAGATAATTACTTGCGTCTGATCAGGAAGGGTTAGCGTTGAAGCTAGAGTAGCCAATGCATCATCTTTCTTATTCTCTGTTCGACGCACATGTTGAAGGGTTACATCCCCAGGCCATCTTATCAACTTTTGAGCATAATCATGATAAGGTCGCAATTCAGGATTTTTTACCTCATAACTTCCTAAGAGTTGATTAATAACCAATTGAGAGTCACCAAAGACCTGTAAATGTAATTGTTTCATGTCAACGGCCATTTCAAGTCCATGTATCAGTGCTTGATATTCAGCGACATTATTGG</genome_strand>
        <mrna_strand>AAGCATCAAATGACCAAGATGCGATGGTTGGGTGCAATACTTCGGGTGGCTGGTGAATGAAATTCACATGAAATTGACAAGCATCACATTTCCTGGCATAATATAAGCAATCTTTCACCATGGTTGGCCAGTAATACCCCATCCTCTTTATGTGGAAATGAAGTTTTGGTCCAGATTGATGTGATCCACATA-----AAGTGTGCTTCTTGCGGGGCTTGAATCGTTTCTTCCTCTCCCAAACATCGTAATAACATACCCTCAAATGATCTTCTATATAATGTATCCTTGTAGTAAAGGAAACGAGGTGCACGACGACGTATGTCAGTTCTTCTTCTTGGATTTTCTGGAAGTATCCCATAACATAGGTAGTCAATGATGGGTTGTCTCCAATCTTCCTTCGCATCTTCAACAATGGAGACGATATGATCAAGCTTATTTTTAATATATTCTTCCTCATTTGACGGTGGTACTATCTATTTTTGACAGACAGTTACTTGCGTTTGATTAGGAAGGGTTAACGTTGAAGCTAGAGTAGCCAATGCATCATCTTTCTTATTCTCTGTTCGACGCACATGCTGAAGGGTTACATCACCAATCCATCTTATCAATTTTTAAGCATAATCATGATAAGGTCGCAATTCAGGCCTTTTTACGTCATAACTTCCTAAGAGTTGATTAATCACCAATTGAGAGTCACCAAAGACCTATAAATGTAATTGTTTCATGTTAACGGCCATTTCAAGTCCAAGTATCAGTGCTTGATATTCAGCGACATTATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0009I15-gLoy2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318979" ref_strand="-" ref_description="SGN-U318979        Tomato 200607 #1 [14 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 1e-64, score=244) genbank/nr: Integrase,(evalue: 0, score=853)">
      <seq>ttttttttttttttttttttttttttttttccaaaaaaaaaaaaaatattaaaaaatatatcatttcaaagtgtgtgtttatatgtttcatatagtggctatttatagccatacattaatgcatacaaggtcattagtgatgtcatattccacatgacactacaattattttacactacaattattttacaacactcccccttggatatctatgtaaaagaaagtacatagatatacataatacgctttatttgctgcctcattaaaaaccttaccaggaaaacccaacttgggacaaaaccatagttaaggaaaagagtacaacgcgtatttcactccccctgatgaaaactttacttgatatcttggagacggcgcattccaatcttgtatctcaacttctcaaacgttgatgttggcaatgcctttgtgaataaatcagcaagattatcacttgaacgaatttgttgaacttctatctcaccattttgttgaagatcatgcgtgaaaaagaactttggtgagatatgctttgtccggtctcctttgatgtatcctcctttcaattgagctatacatgcagcattatcttcgtacattgtggttggtatattctttttcaaagaaaaaccacacatttcctgaatatgatgggtcattgatctcaaccagacgcactctcgacttgcttcatggatggctattatttctgcatgatttgaagaagtggctaccaacgtttgcttcattgatcgccaagatattgccgtgtctccacatgtaaacaaatagcctgtttgtgatcgggctttatgcggatctgataaataccctgcatctgcgtaaccaatcagttctgatttggattcattggaatagaataaacccatgtccatggtccctcgaagatatcgaagtatgtgtttaacaccattccaatgtctttttgttggggaggaactgaatcttgccagtagacttactgcaaaacagatatctggtcgagtattgttagcaaggtacattagtgccccgatcgcactaagataaggagtttcatcaccaagaagctcttcatcattctcttgaggtcgaaatggatctgtattgatgtcaagcgatcttaccaccattggagtactcaatggatgtgagttatccatgtaaaaacgctttagtatcttttctgtgtacgttgattgatgaacaagtattccatttgacaaattctcaatctgtaggccaagacaaaattttgtcttgccgagatctttcatttcaaattcttttttcagacactcaatagcttctaaaagctctttaccagtgccaatgatgttcaaatcatcaacatacacagctattattacaaattcagaccccgaccgtttaataaaaatgcagggacaaatcgggtcatttttgtaccctttctttaacaaatattcactcagacgattgtaccacatccttcctgattgtttcaatccatacagagatttctgaagttttattgaacaagtttctcttgaatctttgtatgcttcaggaactttgaatgcttcaggaattttcatgaaaatgttgtggtccaatgagccatatagataggctgtgacaacgtccattagacgcatttcaagtttttcatgaactgccaaatttatgagatatctgaaggtgattgcatctaccactggagaatatgtctccatataatcaatgccaggtctttgagaaaaaccttgagcaacgagtcgggccttatatctcatgacttcatctttctcatttcttttccgtacaaaaacccatttgtaccccactggcttgataccttcaggtgttcggattatcggtccaaaaacttcacgtatttctagtgaagccaattcagcttgaattgcatccttccattttggccaatcatttctctgtctacattcgtgaacagattttggctcaaaatcttcatattgttgcattattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0009I15-gLoy2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0009I15.1" temp_strand="+" temp_description="C09SLe0009I15.1  EU139073.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139073.1| upload_account_name:spain (1 - 94090)">
        <position start="21425" stop="29247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23980" g_stop="24016" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="106" r_length="36" r_score="0.676"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24017" i_stop="26548" i_length="2532">
            <donor d_prob="0.793" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26549" g_stop="26562" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="120" r_length="14" r_score="0.857"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26563" i_stop="26693" i_length="131">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26694" g_stop="26706" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="132" r_length="12" r_score="0.615"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26707" i_stop="26948" i_length="242">
            <donor d_prob="0.858" d_score="0.00"/>
            <acceptor a_prob="0.452" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26949" g_stop="26970" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="155" r_length="23" r_score="0.545"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26971" i_stop="27067" i_length="97">
            <donor d_prob="0.449" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.70"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27068" g_stop="27132" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="215" r_length="60" r_score="0.723"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27133" i_stop="27191" i_length="59">
            <donor d_prob="0.000" d_score="0.76"/>
            <acceptor a_prob="0.000" a_score="0.73"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27192" g_stop="28947" g_length="1756"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="1990" r_length="1775" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="30" polyA_stop="1"/>
      <MATCH_line gen_id="C09SLe0009I15.1" gen_strand="+" ref_id="SGN-U318979" ref_strand="-">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>1907</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0009I15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U318979" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="23980" e_stop="24016"/>
          <exon e_start="26549" e_stop="26562"/>
          <exon e_start="26694" e_stop="26706"/>
          <exon e_start="26949" e_stop="26970"/>
          <exon e_start="27068" e_stop="27132"/>
          <exon e_start="27192" e_stop="28947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATGTGATTTGATTTGTGT-ATATCGTGTCAATATAGGTAAGAAAAAACAAAAGTAATATTCTCTCCGTTTTAAAAGAGATGACCTAGTTTGACTTGAAACGAATTTTAAAAAAAGAAAAAAGATTTTTTAATCTTGTGGTTCTAAATTAAAATTATGTCAAATCTACCAAAACATTTTTTAATCTTGTAGTCTTAAATATGTCACATAGAAAGTTAAAGTTAAAGTTAAAGTGCTGCTAAAAAGGAAACAGAGGGAATAGAAATAATAATTGATGTTAAAATAAATATTATATCTATCTAAATAAATAATAAGAATTTCATATAAAAAAGTTTAAAAGTTGTTTAAAAATAGGTGAATCCCTTTCTCTTTTATTTATTTATTTTGTTTACCATAATTTAAGTAAGATTAAGGTAAAAATATTGATGTTAAAGTTTCAGGACTTCTTATCATTTTTTAAAAGTAGATAAGAAAAGATTTACTAGGTAAAATTTTAGTTAATTTTAAAGTACTAAAGATTTAAAGGAACAGTATAACTTTAATTAATTTCAAAGTCTTAAATATAAGATTATGATTAAACGATAATTATTTGAGCAAAATGGGAAATGACAATGTTATCTATTGTAAAGCTTTTTAATAAGGGATAAAAACTTCAATCCAACGTATCTAAGGAGCTTTATACTCTTAAAGTAACACTTGTGAAATGTAATTTTTTTGCACGTTGGTAGCTTGTAGACCTGTCAATATGGGCCAGCCGATTCCATTCGGGCTAATTTATACGGGCTTTGATATTTTATGGGTCAAACTGGGTTAGTCTATTTTTTGTGTGTGCCAGAAAACGGCCGGTCCAACTCAAAAGTACGTGAGTTACAGGCTTGCCGGGCCAGTCCACTTTTTAAAAAAATTATATTATTTTTAGAATTATTAAATTAAATAATAAATTATAATTTAAAAATATTAGCATAAATATCGACAAATAATATTACATGATGTTAGTGTTACTACTTTTCAATTAAATTCACAAATAAAATTATCTTTATAATATTTATTAAAAAAAAATTTAAGTAAAAGTATAAATATCTAAATAGAAATATTAACCTAATTGTTTTGAGTTTGGACTCTCTTTAATTTTAAATTTTAATATTATATTATATTTTTTAATTAATTTTACTGATCCACGGGTCAGCCCTATCGATATATCTCAACCCCCTTAAATCGGTAGGTTTATTCAGGTCGAGCTAAAAAGTCCTTTTCATAAATGTGCTTCAAAAATCATAGTCCAATCCTTAAATCTCGAGTTAGATCAGGCCGACCCAATAAACCTAGCACATATTGACGACTCTAGTAACTTGCTAATTAATGATAAATGTACATAGAAAGAACAAATTATTGTATATATTACATTAAGCTGAAAATCATTTTCATCCCAATTTTCCTTTAAAAATCGAAACAATAATCAAACTCCCCCCACCCCCACAACTCTTATCCTATGCATTGTTCATTGATATATAGAACGTCTACCAAAATAATATAAATGTAAAACAAATAAGCCAGAGTAATACATATTCTTAAAAAGTAACCAAAATAGTATAAACGCTATCATTTTATCTATTATTTTGTTCATAAAATTAATGGATAGAAAACAGAGAAATCAACTATTGTTAGCATAAATCGTTACAGTGACGTAATATGAAAAACTACGGTTTTGAAAAAGAAATTGCAGGTGTGCTTGTAATATTTAATTCACAATATTTTTTAAATAGTGCTAACAAAATTTTTCAAAATTTTTATTTAAAATAAATTATATATTAGTATGATAATAAATCATTTCAATAATTATAAAATTGAATATTTGATAAATGTTTTATTAGTACTGATAAATTTTAAGTGATGTTGATTAAATAATTTAAATATTTTATATCCAAAATATCTCTCTATATTTATGAATTAAGATAAAGGTCAAAATAAACAACTAATTATATCTCGATTTTCTTTTTAAAAAATGATAGCTATTTTGAATCAATTATTTTTCACAAAGACGACAATGTAATTTTTATTATTTTAAACAAGCAAATCAGTGTATTAAAATTTTAGTAATTATGTCAAATCTCAAACTACAAAATTTACCTTCAATTAATTTTTTATTTACATCATTTTAAATATAGAGAAACTGATAATATTTTCACAAAATTATAACACATGCCAACAAGAATAAACATAAAAAAAAAAAAAAAGACATTATTCATATCCATCCTAAAAGTAATCTAATAAGGATAATTACATAAATTTCATCTTTTGATTTACTTATTACTATTATTTCCTATAAATTTCACAAATTTTCAAAAAATTTCATTTTTCTTTTAAGTAATAGTATCATTAATGTATCTACCCTCTTCTAAATGTATCAGCGCATGTATCCGACCCTCTTTTTAATGTATTAACGTTTTAATTTTTTAGTCATTAATATATTTACACCCTCTATTAATGTATCTGACCCTCTTTTAAATGTATCAACGTATATATTTCGATTCTCTTTTTAATATATCAACGCTTTGATTTTAATGTATCCGAGCCCTCCATTAATGTATCCGTTTGAGGAATTCGTGTAATTATAAATTTTTAAAGAATAAATTATAAATTACCTTAAAAGTATGTGATTTCGGTAAGTTGCCCTAAAAATAGAATAAATTTTACTGAAAAGAAACAAATTAGAATGCAAGCAACTGACGTAAGTTGAAGCAAATTCGTTTACTAAAGTTTTATGTTAATGTCCGTCCTTTTTTCACTTTCTATCAATCAAGTTTTTATGAATAAAATAATAAGTAAAACGTTATATATATATAAAATTTTGGTTTTTGTTGTAACAAAAGCTCAGAATATAAGAAGAAAAAGACAAGAAGTATAAGATAGAGGAGATAATTTTCTTATTCAAATATATCATACGATACGGAATGATATCTCTATTTATAGTGTTGAGATATCATA-GCCAAAGGTCACCTTGAAATTTTACATGGTTATCATCAAGGTTCATATCACCTTGATATCTTATCACATTGGAAACACTAATACATGAATCCAATTAATTGTTGGATAACTCTAATGGATCATCCACATATACAATGGATTTACAACACTCCCCCTTGGATATCCATAGATTATGTGCCTCGTTAAAACCTTACTAGGAAAAACCCTGTGGGAAAAGGCCTAGTGAAGGAAAAAGAGTACACATATCT-CATAATACGCTTTGAATGTTGCCTCGTTAAAAACCTTACCAGGAAAATCCAACTTGGGACAAAACCATAGTTATAGAAAAGAGTACAACGCGTA-TT-A---------A------CTTTACTTGATATCTCGGAGACGGCGCGTTCCAATCTTGTATCTCAACTTCTCAAACGTTGATGTTGGCAATGCCTTAGTGAATAAATCAGCAAGATTATCACTTGAACGAATTTGTTGAACTTCTATCTCACCATTTTGTTGAAGATCATGCGTGAAAAAGAACTTTGGTGAGATATGCTTTGTCCGGTCTCCTTTGATGTATCCTCCTTTCAATTGAGCTATACATGCAGCATTATCTTCGTACATTGTGGTTGGCATATTCTTTTTCAAAGAAAAACCACACATTTTTTGAATATGATGGGTCATTGATCTCAACCAGACGCACTCTCGACTTGCTTCATGGATGGCTATTATTTCTGCATGATTTGAAGAAGTGGTTACCAACGTTAGCTTCATTGATCGCTAAGATATCGCCGCGTCTCCACATGTAAACAAATAGCCTGTTTGTGATCGAGCTTTATGCGGATCAGATAAATACCCTGCATCTGCATAACCAATCAGTTCTGACTTGAATTCATTGGAATAGAATAAACCAATGTCCATGGTCCCTCGAAGATATCGAAGTATGTGTTTAACACCATTCCAATGTCTTTTTGTTGGGGAGGAACTG-ATCTTGCCAGTAGACTTACTGCAAAACAGATATCTCGTCGAGTATTCTTAGCAAGGTACATTAGTGCCCCGATCGCACTAAGATAAGGAGTTTCATCACCAAGAAGCTCTTCATCATTCTCTTAAGGTCGAAATGGATCTGTATTGATGTCAAATGATCTTACCACCATTGGAGTACTCAATGGATGTGAGTTATCCATGTAAAAACGCCTTAGTATCTTTTCTGTGTACGTTGATTGATGAACAAGTATTCCATTTGACAAATTCTCAATCTGTAGGCCAAGACAAAATTTTGTCTTGGCAAGATCATTCATTTCAAATTCTTTTTTAAGACACTCAATAGCTTCTAAAATCTCTTTACGAGTGCCAATGATGTTCTAATCATCAACATACACAACTATTATTACAAATTCAAACCCCGACCGTTTAATGAAAATGCAGGGACAAATCGGGTCATTTTTGTACCCTTTCTTTAACAAATATTCACTCAGACGATTGTACCACATCCTTCCTGATTGTTTCAATCCATACAGAGATTTCTGAAGCTTTATTGAACAAGTTTCTCTTGAATCTTTGTATACTTCAGGCACTTGGAATGATTTTGGAATTTTCATGAAAATGTTGTGGTCCAATGAGCCATATAGATAGGTTGTGACAACGTCCAATAGACGCATTTCAAGTTTTTCATGAACTGTCAGATTTATGAAATATTTGAAGGTGATTGCATCTACCACTGGAGAATATGTCTCCATATAATCAATGTCAGGTCTTTGAGAAAAACATTGAGTAACGAGTCGGGCCTTATATCTCATGACTTCACCTTTCTCATTTCTTTTTCGTACAAAAACCCATTTGTACCCTACTGGCTTGATACCTTCAGGTGTTCGGATTATCGGTCCAAAAACTTCATGTTTTTCTAGTGAAGCCAATTCAGCTTGAATTGCATCCTTCCATTTTGGCCAATCATTTCTCTGTCTACATTCGTGAACAGATTTTGGCTCAAAATCTTCACCTTGTTGCATTATTT</genome_strand>
        <mrna_strand>GTGTGTG-TTT-ATATGTTTCATATAGTGGCTATTTAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCATACATTAAT...................................................................................................................................GCATACAA-GGTC..................................................................................................................................................................................................................................................ATTAGTGATGTCATATTCCACAT.................................................................................................GA-CACTACAAT-TAT--TTTACA-CTACAATTATTTTACAACACTCCCCCTTGGATATCTATGT...........................................................AAAAGAAAGTACATAGATATACATAATACGCTTTATTTGCTGCCTCATTAAAAACCTTACCAGGAAAACCCAACTTGGGACAAAACCATAGTTAAGGAAAAGAGTACAACGCGTATTTCACTCCCCCTGATGAAAACTTTACTTGATATCTTGGAGACGGCGCATTCCAATCTTGTATCTCAACTTCTCAAACGTTGATGTTGGCAATGCCTTTGTGAATAAATCAGCAAGATTATCACTTGAACGAATTTGTTGAACTTCTATCTCACCATTTTGTTGAAGATCATGCGTGAAAAAGAACTTTGGTGAGATATGCTTTGTCCGGTCTCCTTTGATGTATCCTCCTTTCAATTGAGCTATACATGCAGCATTATCTTCGTACATTGTGGTTGGTATATTCTTTTTCAAAGAAAAACCACACATTTCCTGAATATGATGGGTCATTGATCTCAACCAGACGCACTCTCGACTTGCTTCATGGATGGCTATTATTTCTGCATGATTTGAAGAAGTGGCTACCAACGTTTGCTTCATTGATCGCCAAGATATTGCCGTGTCTCCACATGTAAACAAATAGCCTGTTTGTGATCGGGCTTTATGCGGATCTGATAAATACCCTGCATCTGCGTAACCAATCAGTTCTGATTTGGATTCATTGGAATAGAATAAACCCATGTCCATGGTCCCTCGAAGATATCGAAGTATGTGTTTAACACCATTCCAATGTCTTTTTGTTGGGGAGGAACTGAATCTTGCCAGTAGACTTACTGCAAAACAGATATCTGGTCGAGTATTGTTAGCAAGGTACATTAGTGCCCCGATCGCACTAAGATAAGGAGTTTCATCACCAAGAAGCTCTTCATCATTCTCTTGAGGTCGAAATGGATCTGTATTGATGTCAAGCGATCTTACCACCATTGGAGTACTCAATGGATGTGAGTTATCCATGTAAAAACGCTTTAGTATCTTTTCTGTGTACGTTGATTGATGAACAAGTATTCCATTTGACAAATTCTCAATCTGTAGGCCAAGACAAAATTTTGTCTTGCCGAGATCTTTCATTTCAAATTCTTTTTTCAGACACTCAATAGCTTCTAAAAGCTCTTTACCAGTGCCAATGATGTTCAAATCATCAACATACACAGCTATTATTACAAATTCAGACCCCGACCGTTTAATAAAAATGCAGGGACAAATCGGGTCATTTTTGTACCCTTTCTTTAACAAATATTCACTCAGACGATTGTACCACATCCTTCCTGATTGTTTCAATCCATACAGAGATTTCTGAAGTTTTATTGAACAAGTTTCTCTTGAATCTTTGTATGCTTCAGGAACTTTGAATGCTTCAGGAATTTTCATGAAAATGTTGTGGTCCAATGAGCCATATAGATAGGCTGTGACAACGTCCATTAGACGCATTTCAAGTTTTTCATGAACTGCCAAATTTATGAGATATCTGAAGGTGATTGCATCTACCACTGGAGAATATGTCTCCATATAATCAATGCCAGGTCTTTGAGAAAAACCTTGAGCAACGAGTCGGGCCTTATATCTCATGACTTCATCTTTCTCATTTCTTTTCCGTACAAAAACCCATTTGTACCCCACTGGCTTGATACCTTCAGGTGTTCGGATTATCGGTCCAAAAACTTCACGTATTTCTAGTGAAGCCAATTCAGCTTGAATTGCATCCTTCCATTTTGGCCAATCATTTCTCTGTCTACATTCGTGAACAGATTTTGGCTCAAAATCTTCATATTGTTGCATTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0009I15-gLoy2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339612" ref_strand="+" ref_description="SGN-U339612        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: Integrase,(evalue: 9e-34, score=146)">
      <seq>ttttctaatttggttatgaaaatggcatatgtcaacacaaaattaattgagggctctggaagagcgaccttattactacctggagggacaatattaagcattgataatgcattatattgtagtaagtctcaaagaaacttattaagtttcaaagttattcgccaaaatggctatcatgttgagacggctaatgaaggaaaggttgaatacctttacattactacaattaatgttgagaagaaaattgtgcatgaaaaattacctgcattttcttctgggttgtactatacaagtataagtacagttgaatcacatgccgtagtaaacaaaaggtttactaattttaatgattttatcatttggcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0009I15-gLoy2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0009I15.1" temp_strand="-" temp_description="C09SLe0009I15.1  EU139073.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139073.1| upload_account_name:spain (1 - 94090)">
        <position start="31012" stop="30032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30700" g_stop="30332" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0009I15.1" gen_strand="-" ref_id="SGN-U339612" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0009I15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30700" e_stop="30332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATGAATATGGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACTTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAG-TTCAAAGTTATTCGTCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATATCTTTACATTACTACAATTAATGTAAAGAAGAAAATTGTGCATGAAAAATTACCTGCATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAATAAAAGGTTAATTAATTTTAATGATTTTATCATTTGGCATG</genome_strand>
        <mrna_strand>TTTTCTAATTTGG-TTATGAAAATGGCATAT--GTCAACACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTTGAGAAGAAAATTGTGCATGAAAAATTACCTGCATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTTTATCATTTGGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0009I15-gLoy2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324767" ref_strand="+" ref_description="SGN-U324767        Tomato 200607 #1 [4 ESTs aligned]">
      <seq>agaattacaaaagagagaaaagaagagtgagacatcacagaggaaaataatctctaaggaaaaatagagagtgtgagcgatattgtagtgagatggaaaaatcaaaagagtgttatttcttttgaatgtgtagtgatctttagagttttactcaaacatacaagtgtaaaatccttactatagtgatattcgttgcttctcttgggtcgtggtttttctcttatttaggagggtttccacgtaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0009I15-gLoy2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0009I15.1" temp_strand="-" temp_description="C09SLe0009I15.1  EU139073.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139073.1| upload_account_name:spain (1 - 94090)">
        <position start="45536" stop="44691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45236" g_stop="44997" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="243" polyA_stop="264"/>
      <MATCH_line gen_id="C09SLe0009I15.1" gen_strand="-" ref_id="SGN-U324767" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>240</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0009I15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U324767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45236" e_stop="44997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTACAAAGGACAG-AAAGAAGAGGGAGGCATCACAGAGGAAAATAATCTGTGAGGAAAAAATAGAGAGTGTGAGCGATATTGTAGTGAGGTGGAAAAATCAAAAGAGTGTTATTTCTTTTGAATGTGTAGTGGTCTTTGGAGTTTTACTCAGACATACAAGTGTAAAATCCTTACTATAGTGATATTCGTTGCTCCTCTCGGGTCGTAGTTTTTCCCTTATTTAGGAGGGTTTCCAC</genome_strand>
        <mrna_strand>AGAATTACAAAAGAGAGAAAAGAAGAGTGAGACATCACAGAGGAAAATAATCTCTAAGGAA-AAATAGAGAGTGTGAGCGATATTGTAGTGAGATGGAAAAATCAAAAGAGTGTTATTTCTTTTGAATGTGTAGTGATCTTTAGAGTTTTACTCAAACATACAAGTGTAAAATCCTTACTATAGTGATATTCGTTGCTTCTCTTGGGTCGTGGTTTTTCTCTTATTTAGGAGGGTTTCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>5</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="14428" PGL_stop="14836"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14428" e_stop="14836"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="14428" e_stop="14836" e_length="409"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14428" stop="14836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341680" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATACCCTCCTTAAGGCTTGCTATTCAAGAAGTGCTCACCTAGGAAGAAAATGCTTGATTGCTTCTTGCTGAGTTAGAAGCACTTGATGAAAAGAGGTTAGAAGCCCAACAAAACCTTGAATGTTATCTAGCTCGTCTATCTCGTGCTTTTAATAAAAAGGTTCGCTTGAGGTGCTTTCAAGTTGGAGATCAAGTTCTCGCGGTAAGAATACCAATCATTACTTTACACAAGTCTGGGGCCAAATTTACCTCAAAGTGGGGTGGACCATATGTCATACAAGAAGCATATTCAAATGGTGCTTACAAGCTTGTTGATGCTGATGGCTTAAGGATCGGTCCTATTAATGCCAAATTTCTAAAGAGATACTATCTTTGAAGGAAGATGATGCTCCTCAAGGTACGAGCCTAAA</gDNA_template>
            <first_frame> I  P  S  L  R  L  A  I  Q  E  V  L  T  *  E  E  N  A  *  L  L  L  A  E  L  E  A  L  D  E  K  R  L  E  A  Q  Q  N  L  E  C  Y  L  A  R  L  S  R  A  F  N  K  K  V  R  L  R  C  F  Q  V  G  D  Q  V  L  A  V  R  I  P  I  I  T  L  H  K  S  G  A  K  F  T  S  K  W  G  G  P  Y  V  I  Q  E  A  Y  S  N  G  A  Y  K  L  V  D  A  D  G  L  R  I  G  P  I  N  A  K  F  L  K  R  Y  Y  L  *  R  K  M  M  L  L  K  V  R  A  *  </first_frame>
            <second_frame>  Y  P  P  *  G  L  L  F  K  K  C  S  P  R  K  K  M  L  D  C  F  L  L  S  *  K  H  L  M  K  R  G  *  K  P  N  K  T  L  N  V  I  *  L  V  Y  L  V  L  L  I  K  R  F  A  *  G  A  F  K  L  E  I  K  F  S  R  *  E  Y  Q  S  L  L  Y  T  S  L  G  P  N  L  P  Q  S  G  V  D  H  M  S  Y  K  K  H  I  Q  M  V  L  T  S  L  L  M  L  M  A  *  G  S  V  L  L  M  P  N  F  *  R  D  T  I  F  E  G  R  *  C  S  S  R  Y  E  P  K </second_frame>
            <third_frame>   T  L  L  K  A  C  Y  S  R  S  A  H  L  G  R  K  C  L  I  A  S  C  *  V  R  S  T  *  *  K  E  V  R  S  P  T  K  P  *  M  L  S  S  S  S  I  S  C  F  *  *  K  G  S  L  E  V  L  S  S  W  R  S  S  S  R  G  K  N  T  N  H  Y  F  T  Q  V  W  G  Q  I  Y  L  K  V  G  W  T  I  C  H  T  R  S  I  F  K  W  C  L  Q  A  C  *  C  *  W  L  K  D  R  S  Y  *  C  Q  I  S  K  E  I  L  S  L  K  E  D  D  A  P  Q  G  T  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0009I15.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14485" stop="14802"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLLAELEALDEKRLEAQQNLECYLARLSRAFNKKVRLRCFQVGDQVLAVRIPIITLHKSGAKFTSKWGGPYVIQEAYSNGAYKLVDADGLRIGPINAKFLKRYYL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="17520" PGL_stop="16738"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17520" e_stop="16738"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.926">
            <gDNA_exon_boundary e_start="17520" e_stop="16738" e_length="783"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17520" stop="16738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345321" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGCGTCAAATGGCCAAGATGCAATGGTTGGGTGCAATACTTCGGGTGGCTGATGAATGAAATTCGCATGAAATAGACAAGCATCGCATTTCCTGGCATAATATAAGCAATCATTCACCATGGTTTACCATTAATACCCCATCCTCTTTATGTGAAAATGAAGTTTTGGTCCAGATTGATGTGATCCACATACTCCTGAACGTGCTTCTTGCAGAGCTTGAGTCGCTTCTTCCTCTACCAAGCATTGTAATAACATACCCTCAAATGATCTTCAATATAATGTATCCTTGTAGTAAAGGAAACCAGGTGCACGACGCGTTATGTCAGTCCTTCTTCTTGGATTTTCTGGAAGTGTCCCATAACATAGGTAGTCAATGATGGGTTGTCTCCAATCTTCCTTCGCAGCTTCAACAATGGCGACGATATGATCAAGCTTATTTTCAATATATTCTTCCTCATTTGATGGTGGTACTATCCATTTTTTACAGATAATTACTTGCGTCTGATCAGGAAGGGTTAGCGTTGAAGCTAGAGTAGCCAATGCATCATCTTTCTTATTCTCTGTTCGACGCACATGTTGAAGGGTTACATCCCCAGGCCATCTTATCAACTTTTGAGCATAATCATGATAAGGTCGCAATTCAGGATTTTTTACCTCATAACTTCCTAAGAGTTGATTAATAACCAATTGAGAGTCACCAAAGACCTGTAAATGTAATTGTTTCATGTCAACGGCCATTTCAAGTCCATGTATCAGTGCTTGATATTCAGCGACATTATTGG</gDNA_template>
            <first_frame> K  R  Q  M  A  K  M  Q  W  L  G  A  I  L  R  V  A  D  E  *  N  S  H  E  I  D  K  H  R  I  S  W  H  N  I  S  N  H  S  P  W  F  T  I  N  T  P  S  S  L  C  E  N  E  V  L  V  Q  I  D  V  I  H  I  L  L  N  V  L  L  A  E  L  E  S  L  L  P  L  P  S  I  V  I  T  Y  P  Q  M  I  F  N  I  M  Y  P  C  S  K  G  N  Q  V  H  D  A  L  C  Q  S  F  F  L  D  F  L  E  V  S  H  N  I  G  S  Q  *  W  V  V  S  N  L  P  S  Q  L  Q  Q  W  R  R  Y  D  Q  A  Y  F  Q  Y  I  L  P  H  L  M  V  V  L  S  I  F  Y  R  *  L  L  A  S  D  Q  E  G  L  A  L  K  L  E  *  P  M  H  H  L  S  Y  S  L  F  D  A  H  V  E  G  L  H  P  Q  A  I  L  S  T  F  E  H  N  H  D  K  V  A  I  Q  D  F  L  P  H  N  F  L  R  V  D  *  *  P  I  E  S  H  Q  R  P  V  N  V  I  V  S  C  Q  R  P  F  Q  V  H  V  S  V  L  D  I  Q  R  H  Y  W </first_frame>
            <second_frame>  S  V  K  W  P  R  C  N  G  W  V  Q  Y  F  G  W  L  M  N  E  I  R  M  K  *  T  S  I  A  F  P  G  I  I  *  A  I  I  H  H  G  L  P  L  I  P  H  P  L  Y  V  K  M  K  F  W  S  R  L  M  *  S  T  Y  S  *  T  C  F  L  Q  S  L  S  R  F  F  L  Y  Q  A  L  *  *  H  T  L  K  *  S  S  I  *  C  I  L  V  V  K  E  T  R  C  T  T  R  Y  V  S  P  S  S  W  I  F  W  K  C  P  I  T  *  V  V  N  D  G  L  S  P  I  F  L  R  S  F  N  N  G  D  D  M  I  K  L  I  F  N  I  F  F  L  I  *  W  W  Y  Y  P  F  F  T  D  N  Y  L  R  L  I  R  K  G  *  R  *  S  *  S  S  Q  C  I  I  F  L  I  L  C  S  T  H  M  L  K  G  Y  I  P  R  P  S  Y  Q  L  L  S  I  I  M  I  R  S  Q  F  R  I  F  Y  L  I  T  S  *  E  L  I  N  N  Q  L  R  V  T  K  D  L  *  M  *  L  F  H  V  N  G  H  F  K  S  M  Y  Q  C  L  I  F  S  D  I  I   </second_frame>
            <third_frame>   A  S  N  G  Q  D  A  M  V  G  C  N  T  S  G  G  *  *  M  K  F  A  *  N  R  Q  A  S  H  F  L  A  *  Y  K  Q  S  F  T  M  V  Y  H  *  Y  P  I  L  F  M  *  K  *  S  F  G  P  D  *  C  D  P  H  T  P  E  R  A  S  C  R  A  *  V  A  S  S  S  T  K  H  C  N  N  I  P  S  N  D  L  Q  Y  N  V  S  L  *  *  R  K  P  G  A  R  R  V  M  S  V  L  L  L  G  F  S  G  S  V  P  *  H  R  *  S  M  M  G  C  L  Q  S  S  F  A  A  S  T  M  A  T  I  *  S  S  L  F  S  I  Y  S  S  S  F  D  G  G  T  I  H  F  L  Q  I  I  T  C  V  *  S  G  R  V  S  V  E  A  R  V  A  N  A  S  S  F  L  F  S  V  R  R  T  C  *  R  V  T  S  P  G  H  L  I  N  F  *  A  *  S  *  *  G  R  N  S  G  F  F  T  S  *  L  P  K  S  *  L  I  T  N  *  E  S  P  K  T  C  K  C  N  C  F  M  S  T  A  I  S  S  P  C  I  S  A  *  Y  S  A  T  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0009I15.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17460" stop="17143"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSHEIDKHRISWHNISNHSPWFTINTPSSLCENEVLVQIDVIHILLNVLLAELESLLPLPSIVITYPQMIFNIMYPCSKGNQVHDALCQSFFLDFLEVSHNIGSQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="23980" PGL_stop="28947"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23980" e_stop="24016"/>
            <exon e_start="26549" e_stop="26562"/>
            <exon e_start="26694" e_stop="26706"/>
            <exon e_start="26949" e_stop="26970"/>
            <exon e_start="27068" e_stop="27132"/>
            <exon e_start="27192" e_stop="28947"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.793" acc_prob="0.000" e_score="0.676"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.857"/>
          <exon-intron don_prob="0.858" acc_prob="0.452" e_score="0.615"/>
          <exon-intron don_prob="0.449" acc_prob="0.000" e_score="0.545"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.723"/>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.676">
            <gDNA_exon_boundary e_start="23980" e_stop="24016" e_length="37"/>
          </exon>
          <intron i_serial="1" don_prob="0.793" acc_prob="0.000">
            <gDNA_intron_boundary i_start="24017" i_stop="26548" i_length="2532"/>
          </intron>
          <exon e_serial="2" e_score="0.857">
            <gDNA_exon_boundary e_start="26549" e_stop="26562" e_length="14"/>
          </exon>
          <intron i_serial="2" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="26563" i_stop="26693" i_length="131"/>
          </intron>
          <exon e_serial="3" e_score="0.615">
            <gDNA_exon_boundary e_start="26694" e_stop="26706" e_length="13"/>
          </exon>
          <intron i_serial="3" don_prob="0.858" acc_prob="0.452">
            <gDNA_intron_boundary i_start="26707" i_stop="26948" i_length="242"/>
          </intron>
          <exon e_serial="4" e_score="0.545">
            <gDNA_exon_boundary e_start="26949" e_stop="26970" e_length="22"/>
          </exon>
          <intron i_serial="4" don_prob="0.449" acc_prob="0.000">
            <gDNA_intron_boundary i_start="26971" i_stop="27067" i_length="97"/>
          </intron>
          <exon e_serial="5" e_score="0.723">
            <gDNA_exon_boundary e_start="27068" e_stop="27132" e_length="65"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="27133" i_stop="27191" i_length="59"/>
          </intron>
          <exon e_serial="6" e_score="0.938">
            <gDNA_exon_boundary e_start="27192" e_stop="28947" e_length="1756"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23980" stop="24016"/>
              <exon start="26549" stop="26562"/>
              <exon start="26694" stop="26706"/>
              <exon start="26949" stop="26970"/>
              <exon start="27068" stop="27132"/>
              <exon start="27192" stop="28947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318979" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTATGTGATTTGATTTGTGTATATCGTGTCAATATAG : AGCCCTCCATTAAT : GCAAGCAACTGAC : TGTTGAGATATCATAGCCAAAG : GATAACTCTAATGGATCATCCACATATACAATGGATTTACAACACTCCCCCTTGGATATCCATAG : GAAAAAGAGTACACATATCTCATAATACGCTTTGAATGTTGCCTCGTTAAAAACCTTACCAGGAAAATCCAACTTGGGACAAAACCATAGTTATAGAAAAGAGTACAACGCGTATTAACTTTACTTGATATCTCGGAGACGGCGCGTTCCAATCTTGTATCTCAACTTCTCAAACGTTGATGTTGGCAATGCCTTAGTGAATAAATCAGCAAGATTATCACTTGAACGAATTTGTTGAACTTCTATCTCACCATTTTGTTGAAGATCATGCGTGAAAAAGAACTTTGGTGAGATATGCTTTGTCCGGTCTCCTTTGATGTATCCTCCTTTCAATTGAGCTATACATGCAGCATTATCTTCGTACATTGTGGTTGGCATATTCTTTTTCAAAGAAAAACCACACATTTTTTGAATATGATGGGTCATTGATCTCAACCAGACGCACTCTCGACTTGCTTCATGGATGGCTATTATTTCTGCATGATTTGAAGAAGTGGTTACCAACGTTAGCTTCATTGATCGCTAAGATATCGCCGCGTCTCCACATGTAAACAAATAGCCTGTTTGTGATCGAGCTTTATGCGGATCAGATAAATACCCTGCATCTGCATAACCAATCAGTTCTGACTTGAATTCATTGGAATAGAATAAACCAATGTCCATGGTCCCTCGAAGATATCGAAGTATGTGTTTAACACCATTCCAATGTCTTTTTGTTGGGGAGGAACTGATCTTGCCAGTAGACTTACTGCAAAACAGATATCTCGTCGAGTATTCTTAGCAAGGTACATTAGTGCCCCGATCGCACTAAGATAAGGAGTTTCATCACCAAGAAGCTCTTCATCATTCTCTTAAGGTCGAAATGGATCTGTATTGATGTCAAATGATCTTACCACCATTGGAGTACTCAATGGATGTGAGTTATCCATGTAAAAACGCCTTAGTATCTTTTCTGTGTACGTTGATTGATGAACAAGTATTCCATTTGACAAATTCTCAATCTGTAGGCCAAGACAAAATTTTGTCTTGGCAAGATCATTCATTTCAAATTCTTTTTTAAGACACTCAATAGCTTCTAAAATCTCTTTACGAGTGCCAATGATGTTCTAATCATCAACATACACAACTATTATTACAAATTCAAACCCCGACCGTTTAATGAAAATGCAGGGACAAATCGGGTCATTTTTGTACCCTTTCTTTAACAAATATTCACTCAGACGATTGTACCACATCCTTCCTGATTGTTTCAATCCATACAGAGATTTCTGAAGCTTTATTGAACAAGTTTCTCTTGAATCTTTGTATACTTCAGGCACTTGGAATGATTTTGGAATTTTCATGAAAATGTTGTGGTCCAATGAGCCATATAGATAGGTTGTGACAACGTCCAATAGACGCATTTCAAGTTTTTCATGAACTGTCAGATTTATGAAATATTTGAAGGTGATTGCATCTACCACTGGAGAATATGTCTCCATATAATCAATGTCAGGTCTTTGAGAAAAACATTGAGTAACGAGTCGGGCCTTATATCTCATGACTTCACCTTTCTCATTTCTTTTTCGTACAAAAACCCATTTGTACCCTACTGGCTTGATACCTTCAGGTGTTCGGATTATCGGTCCAAAAACTTCATGTTTTTCTAGTGAAGCCAATTCAGCTTGAATTGCATCCTTCCATTTTGGCCAATCATTTCTCTGTCTACATTCGTGAACAGATTTTGGCTCAAAATCTTCACCTTGTTGCATTATTT</gDNA_template>
            <first_frame> V  C  D  L  I  C  V  Y  R  V  N  I   : E  P  S  I  N  :  A  S  N  *   : L  L  R  Y  H  S  Q  R :   I  T  L  M  D  H  P  H  I  Q  W  I  Y  N  T  P  P  W  I  S  I   : G  K  R  V  H  I  S  H  N  T  L  *  M  L  P  R  *  K  P  Y  Q  E  N  P  T  W  D  K  T  I  V  I  E  K  S  T  T  R  I  N  F  T  *  Y  L  G  D  G  A  F  Q  S  C  I  S  T  S  Q  T  L  M  L  A  M  P  *  *  I  N  Q  Q  D  Y  H  L  N  E  F  V  E  L  L  S  H  H  F  V  E  D  H  A  *  K  R  T  L  V  R  Y  A  L  S  G  L  L  *  C  I  L  L  S  I  E  L  Y  M  Q  H  Y  L  R  T  L  W  L  A  Y  S  F  S  K  K  N  H  T  F  F  E  Y  D  G  S  L  I  S  T  R  R  T  L  D  L  L  H  G  W  L  L  F  L  H  D  L  K  K  W  L  P  T  L  A  S  L  I  A  K  I  S  P  R  L  H  M  *  T  N  S  L  F  V  I  E  L  Y  A  D  Q  I  N  T  L  H  L  H  N  Q  S  V  L  T  *  I  H  W  N  R  I  N  Q  C  P  W  S  L  E  D  I  E  V  C  V  *  H  H  S  N  V  F  L  L  G  R  N  *  S  C  Q  *  T  Y  C  K  T  D  I  S  S  S  I  L  S  K  V  H  *  C  P  D  R  T  K  I  R  S  F  I  T  K  K  L  F  I  I  L  L  R  S  K  W  I  C  I  D  V  K  *  S  Y  H  H  W  S  T  Q  W  M  *  V  I  H  V  K  T  P  *  Y  L  F  C  V  R  *  L  M  N  K  Y  S  I  *  Q  I  L  N  L  *  A  K  T  K  F  C  L  G  K  I  I  H  F  K  F  F  F  K  T  L  N  S  F  *  N  L  F  T  S  A  N  D  V  L  I  I  N  I  H  N  Y  Y  Y  K  F  K  P  R  P  F  N  E  N  A  G  T  N  R  V  I  F  V  P  F  L  *  Q  I  F  T  Q  T  I  V  P  H  P  S  *  L  F  Q  S  I  Q  R  F  L  K  L  Y  *  T  S  F  S  *  I  F  V  Y  F  R  H  L  E  *  F  W  N  F  H  E  N  V  V  V  Q  *  A  I  *  I  G  C  D  N  V  Q  *  T  H  F  K  F  F  M  N  C  Q  I  Y  E  I  F  E  G  D  C  I  Y  H  W  R  I  C  L  H  I  I  N  V  R  S  L  R  K  T  L  S  N  E  S  G  L  I  S  H  D  F  T  F  L  I  S  F  S  Y  K  N  P  F  V  P  Y  W  L  D  T  F  R  C  S  D  Y  R  S  K  N  F  M  F  F  *  *  S  Q  F  S  L  N  C  I  L  P  F  W  P  I  I  S  L  S  T  F  V  N  R  F  W  L  K  I  F  T  L  L  H  Y   </first_frame>
            <second_frame>  Y  V  I  *  F  V  Y  I  V  S  I  *  :  S  P  P  L  M :   Q  A  T  D  :  C  *  D  I  I  A  K   : G  *  L  *  W  I  I  H  I  Y  N  G  F  T  T  L  P  L  G  Y  P  *  :  E  K  E  Y  T  Y  L  I  I  R  F  E  C  C  L  V  K  N  L  T  R  K  I  Q  L  G  T  K  P  *  L  *  K  R  V  Q  R  V  L  T  L  L  D  I  S  E  T  A  R  S  N  L  V  S  Q  L  L  K  R  *  C  W  Q  C  L  S  E  *  I  S  K  I  I  T  *  T  N  L  L  N  F  Y  L  T  I  L  L  K  I  M  R  E  K  E  L  W  *  D  M  L  C  P  V  S  F  D  V  S  S  F  Q  L  S  Y  T  C  S  I  I  F  V  H  C  G  W  H  I  L  F  Q  R  K  T  T  H  F  L  N  M  M  G  H  *  S  Q  P  D  A  L  S  T  C  F  M  D  G  Y  Y  F  C  M  I  *  R  S  G  Y  Q  R  *  L  H  *  S  L  R  Y  R  R  V  S  T  C  K  Q  I  A  C  L  *  S  S  F  M  R  I  R  *  I  P  C  I  C  I  T  N  Q  F  *  L  E  F  I  G  I  E  *  T  N  V  H  G  P  S  K  I  S  K  Y  V  F  N  T  I  P  M  S  F  C  W  G  G  T  D  L  A  S  R  L  T  A  K  Q  I  S  R  R  V  F  L  A  R  Y  I  S  A  P  I  A  L  R  *  G  V  S  S  P  R  S  S  S  S  F  S  *  G  R  N  G  S  V  L  M  S  N  D  L  T  T  I  G  V  L  N  G  C  E  L  S  M  *  K  R  L  S  I  F  S  V  Y  V  D  *  *  T  S  I  P  F  D  K  F  S  I  C  R  P  R  Q  N  F  V  L  A  R  S  F  I  S  N  S  F  L  R  H  S  I  A  S  K  I  S  L  R  V  P  M  M  F  *  S  S  T  Y  T  T  I  I  T  N  S  N  P  D  R  L  M  K  M  Q  G  Q  I  G  S  F  L  Y  P  F  F  N  K  Y  S  L  R  R  L  Y  H  I  L  P  D  C  F  N  P  Y  R  D  F  *  S  F  I  E  Q  V  S  L  E  S  L  Y  T  S  G  T  W  N  D  F  G  I  F  M  K  M  L  W  S  N  E  P  Y  R  *  V  V  T  T  S  N  R  R  I  S  S  F  S  *  T  V  R  F  M  K  Y  L  K  V  I  A  S  T  T  G  E  Y  V  S  I  *  S  M  S  G  L  *  E  K  H  *  V  T  S  R  A  L  Y  L  M  T  S  P  F  S  F  L  F  R  T  K  T  H  L  Y  P  T  G  L  I  P  S  G  V  R  I  I  G  P  K  T  S  C  F  S  S  E  A  N  S  A  *  I  A  S  F  H  F  G  Q  S  F  L  C  L  H  S  *  T  D  F  G  S  K  S  S  P  C  C  I  I  </second_frame>
            <third_frame>   M  *  F  D  L  C  I  S  C  Q  Y  R :   A  L  H  *   : C  K  Q  L  T :   V  E  I  S  *  P  K  :  D  N  S  N  G  S  S  T  Y  T  M  D  L  Q  H  S  P  L  D  I  H  R :   K  K  S  T  H  I  S  *  Y  A  L  N  V  A  S  L  K  T  L  P  G  K  S  N  L  G  Q  N  H  S  Y  R  K  E  Y  N  A  Y  *  L  Y  L  I  S  R  R  R  R  V  P  I  L  Y  L  N  F  S  N  V  D  V  G  N  A  L  V  N  K  S  A  R  L  S  L  E  R  I  C  *  T  S  I  S  P  F  C  *  R  S  C  V  K  K  N  F  G  E  I  C  F  V  R  S  P  L  M  Y  P  P  F  N  *  A  I  H  A  A  L  S  S  Y  I  V  V  G  I  F  F  F  K  E  K  P  H  I  F  *  I  *  W  V  I  D  L  N  Q  T  H  S  R  L  A  S  W  M  A  I  I  S  A  *  F  E  E  V  V  T  N  V  S  F  I  D  R  *  D  I  A  A  S  P  H  V  N  K  *  P  V  C  D  R  A  L  C  G  S  D  K  Y  P  A  S  A  *  P  I  S  S  D  L  N  S  L  E  *  N  K  P  M  S  M  V  P  R  R  Y  R  S  M  C  L  T  P  F  Q  C  L  F  V  G  E  E  L  I  L  P  V  D  L  L  Q  N  R  Y  L  V  E  Y  S  *  Q  G  T  L  V  P  R  S  H  *  D  K  E  F  H  H  Q  E  A  L  H  H  S  L  K  V  E  M  D  L  Y  *  C  Q  M  I  L  P  P  L  E  Y  S  M  D  V  S  Y  P  C  K  N  A  L  V  S  F  L  C  T  L  I  D  E  Q  V  F  H  L  T  N  S  Q  S  V  G  Q  D  K  I  L  S  W  Q  D  H  S  F  Q  I  L  F  *  D  T  Q  *  L  L  K  S  L  Y  E  C  Q  *  C  S  N  H  Q  H  T  Q  L  L  L  Q  I  Q  T  P  T  V  *  *  K  C  R  D  K  S  G  H  F  C  T  L  S  L  T  N  I  H  S  D  D  C  T  T  S  F  L  I  V  S  I  H  T  E  I  S  E  A  L  L  N  K  F  L  L  N  L  C  I  L  Q  A  L  G  M  I  L  E  F  S  *  K  C  C  G  P  M  S  H  I  D  R  L  *  Q  R  P  I  D  A  F  Q  V  F  H  E  L  S  D  L  *  N  I  *  R  *  L  H  L  P  L  E  N  M  S  P  Y  N  Q  C  Q  V  F  E  K  N  I  E  *  R  V  G  P  Y  I  S  *  L  H  L  S  H  F  F  F  V  Q  K  P  I  C  T  L  L  A  *  Y  L  Q  V  F  G  L  S  V  Q  K  L  H  V  F  L  V  K  P  I  Q  L  E  L  H  P  S  I  L  A  N  H  F  S  V  Y  I  R  E  Q  I  L  A  Q  N  L  H  L  V  A  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0009I15.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28589" stop="28840"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THFKFFMNCQIYEIFEGDCIYHWRICLHIINVRSLRKTLSNESGLISHDFTFLISFSYKNPFVPYWLDTFRCSDYRSKNFMFF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0009I15.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27509" stop="27742"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CILLSIELYMQHYLRTLWLAYSFSKKNHTFFEYDGSLISTRRTLDLLHGWLLFLHDLKKWLPTLASLIAKISPRLHM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="30700" PGL_stop="30332"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30700" e_stop="30332"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.921"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.921">
            <gDNA_exon_boundary e_start="30700" e_stop="30332" e_length="369"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30700" stop="30332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339612" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTATGAATATGGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACTTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTCAAAGTTATTCGTCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATATCTTTACATTACTACAATTAATGTAAAGAAGAAAATTGTGCATGAAAAATTACCTGCATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAATAAAAGGTTAATTAATTTTAATGATTTTATCATTTGGCATG</gDNA_template>
            <first_frame> V  M  N  M  A  Y  V  N  T  I  S  G  S  T  K  L  I  E  G  S  G  R  A  T  L  L  L  L  G  G  T  I  L  S  I  D  N  A  L  Y  C  S  K  S  Q  R  N  L  L  S  S  K  L  F  V  K  M  A  I  M  L  R  R  L  M  K  E  R  L  N  I  F  T  L  L  Q  L  M  *  R  R  K  L  C  M  K  N  Y  L  H  F  L  L  G  C  T  I  Q  V  *  V  Q  L  N  H  M  P  *  *  I  K  G  *  L  I  L  M  I  L  S  F  G  M </first_frame>
            <second_frame>  L  *  I  W  H  M  S  T  Q  Y  Q  V  V  Q  N  *  L  R  A  L  E  E  R  P  Y  Y  Y  L  E  G  Q  Y  *  A  L  I  M  H  Y  I  V  V  S  L  K  E  T  Y  *  V  Q  S  Y  S  S  K  W  L  S  C  *  D  G  *  *  R  K  G  *  I  S  L  H  Y  Y  N  *  C  K  E  E  N  C  A  *  K  I  T  C  I  F  F  W  V  V  L  Y  K  Y  K  Y  S  *  I  T  C  R  S  K  *  K  V  N  *  F  *  *  F  Y  H  L  A   </second_frame>
            <third_frame>   Y  E  Y  G  I  C  Q  H  N  I  R  *  Y  K  I  N  *  G  L  W  K  S  D  L  I  T  T  W  R  D  N  I  K  H  *  *  C  I  I  L  *  *  V  S  K  K  L  I  K  F  K  V  I  R  Q  N  G  Y  H  V  E  T  A  N  E  G  K  V  E  Y  L  Y  I  T  T  I  N  V  K  K  K  I  V  H  E  K  L  P  A  F  S  S  G  L  Y  Y  T  S  I  S  T  V  E  S  H  A  V  V  N  K  R  L  I  N  F  N  D  F  I  I  W  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0009I15.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30572" stop="30333"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSKKLIKFKVIRQNGYHVETANEGKVEYLYITTINVKKKIVHEKLPAFSSGLYYTSISTVESHAVVNKRLINFNDFIIWH</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0009I15.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30700" stop="30464"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VMNMAYVNTISGSTKLIEGSGRATLLLLGGTILSIDNALYCSKSQRNLLSSKLFVKMAIMLRRLMKERLNIFTLLQLM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="45236" PGL_stop="44997"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45236" e_stop="44997"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="45236" e_stop="44997" e_length="240"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45236" stop="44997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324767" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAATTACAAAGGACAGAAAGAAGAGGGAGGCATCACAGAGGAAAATAATCTGTGAGGAAAAAATAGAGAGTGTGAGCGATATTGTAGTGAGGTGGAAAAATCAAAAGAGTGTTATTTCTTTTGAATGTGTAGTGGTCTTTGGAGTTTTACTCAGACATACAAGTGTAAAATCCTTACTATAGTGATATTCGTTGCTCCTCTCGGGTCGTAGTTTTTCCCTTATTTAGGAGGGTTTCCAC</gDNA_template>
            <first_frame> R  I  T  K  D  R  K  K  R  E  A  S  Q  R  K  I  I  C  E  E  K  I  E  S  V  S  D  I  V  V  R  W  K  N  Q  K  S  V  I  S  F  E  C  V  V  V  F  G  V  L  L  R  H  T  S  V  K  S  L  L  *  *  Y  S  L  L  L  S  G  R  S  F  S  L  I  *  E  G  F  H </first_frame>
            <second_frame>  E  L  Q  R  T  E  R  R  G  R  H  H  R  G  K  *  S  V  R  K  K  *  R  V  *  A  I  L  *  *  G  G  K  I  K  R  V  L  F  L  L  N  V  *  W  S  L  E  F  Y  S  D  I  Q  V  *  N  P  Y  Y  S  D  I  R  C  S  S  R  V  V  V  F  P  L  F  R  R  V  S   </second_frame>
            <third_frame>   N  Y  K  G  Q  K  E  E  G  G  I  T  E  E  N  N  L  *  G  K  N  R  E  C  E  R  Y  C  S  E  V  E  K  S  K  E  C  Y  F  F  *  M  C  S  G  L  W  S  F  T  Q  T  Y  K  C  K  I  L  T  I  V  I  F  V  A  P  L  G  S  *  F  F  P  Y  L  G  G  F  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0009I15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 13 chains have been computed
$ 
$ memory statistics:
$ 10696 bytes spliced alignments in total
$ 5 spliced alignments have been stored
$ 2139 bytes was the average size of a spliced alignment
$ 10392 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2078 bytes was the average size of a predicted gene location
$ 4 megabytes was the average size of the backtrace matrix
$ 16 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-14 17:46:35
-->
