<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-02-02 17:29:57"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539789" ref_strand="+" ref_description="SGN-E539789 [TUS-59-L18](-)">
      <seq>ttttttcagggtaagcggcgtccatttgtcgtggaaaccgtgaaggcagatgatgaagcaaaatttggaagaggtccttctcaacctgctccaaagtttgttggaaatttaatagcatttcttctcaacatagtcggaccgaagggtctagaatttgcacgttactcgctagattatcacacaatcagaaattacttaaacgtagtccgcaaatggggaaaagaaagagcggacagacatatgcctgaatatgcaaagaaaattgttagcatgtacaacgagagtggagaaattgatcaaatgctttccaaaaagtgaataatttgatggtagaactttggcatttgcaactcaagctttggtgaacaaagttatccggtacctatgctggtggaaggtagcaagtatcccatagagtagtcgaggtgcgtgcgagctaacccgtacaccatggttatcaaaaaaatgttggtgattgcaactcttcatgtacgtgtatagtgtctaattaaacacacatcagaattaactctttttgatagaattgtaattccttttataataattaactatgttgaccattggtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="+" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="5148" stop="6959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5448" g_stop="5514" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5515" i_stop="5970" i_length="456">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.535" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5971" g_stop="6035" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="132" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6036" i_stop="6118" i_length="83">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6119" g_stop="6213" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="227" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6214" i_stop="6292" i_length="79">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6293" g_stop="6661" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="596" r_length="369" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="+" ref_id="SGN-E539789" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5448" e_stop="5514"/>
          <exon e_start="5971" e_stop="6035"/>
          <exon e_start="6119" e_stop="6213"/>
          <exon e_start="6293" e_stop="6661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCAGGGTAAGCGGCGTCCATTTGTCGTGGAAACCGTGAAGGCAGATGATGAAGCAAAATTTGGTATGTGGTATTTTGTGATATTTATTCATTTCATAAGTTGTTACTAAGCTGGCTCTCTCTGTACACATACTGCTGCTGGTTCAGAATTAGATATCTGCTCTCGGGTTTTGTACTGTTCTTTGTTGGGTCCATGTGCAAGTATCAAACATCTGACCTTTTTCCCTATCCCTTTTCGCTTTGAATGCTGTTAAAAAGTATGAAATGTTACACATCTCATCGACTGTTTATTTAAGATTAACCTTAATTTGTTTTAATCCTTGTAAGTCAAGTGAATTTAGCTATTTAAGTTGCTTCAATTACTTCATTTGTTATGATACTCCCCGTTGATTACAGTATGCTGAAGGCAGAACCCCGAGAAGTAAATCCTTTTCTGACATGTTCTTGAAGTAAATATTTTTGTTGAACAACTTCTCAGTAATCTCACAAGACTTATGCAGAAACTTTCTGAATTTCCAGGAAGAGGTCCTTCTCAACCTGCTCCAAAGTTTGTTGGAAATTTAATAGCATTTCTTCTCAACATAGTAAGAACTTTTTGTTCACTGACTTGTTACTTTCAGAAAGGACAACAAATTCCCTGTGCTTAAACTTGTTTGTCTTGGTTCAGGTCGGACCGAAGGGTCTAGAATTTGCACGTTACTCGCTAGATTATCACACAATCAGAAATTACTTAAACGTAGTCCGCAAATGGGGAAAAGAAAGGTCTGTAGAAATTCATATTTGTTCCATTATGATGGATTACATTAATTTTTTCTCACACGTGTTTTTTGTGTAATTGCAGAGCGGACAGACATATGCCTGAATATGCAAAGAAAATTGTTAGCATGTACAACGAGAGTGGAGAAATTGATCAAATGCTTTCCAAAAAGTGAATAATTTGATGGTAGAACTTTGGCATTTGCAACTCAAGCTTTGGTGAACAAAGTTATCCGGTACCTATGCTGGTGGAAGGTAGCAAGTATCCCATAGAGTAGTCGAGGTGCGTGCGAGCTAACCCGTACACCATGGTTATCAAAAAAATGTTGGTGATTGCAACTCTTCATGTACGTGTATAGTGTCTAATTAAACACACATCAGAATTAACTCTTTTTGATAGAATTGTAATTCCTTTTATAATAATTAACTATGTTGACCATTGGTAAAAACAACT</genome_strand>
        <mrna_strand>TTTTTTCAGGGTAAGCGGCGTCCATTTGTCGTGGAAACCGTGAAGGCAGATGATGAAGCAAAATTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGGTCCTTCTCAACCTGCTCCAAAGTTTGTTGGAAATTTAATAGCATTTCTTCTCAACATA...................................................................................GTCGGACCGAAGGGTCTAGAATTTGCACGTTACTCGCTAGATTATCACACAATCAGAAATTACTTAAACGTAGTCCGCAAATGGGGAAAAGAAAG...............................................................................AGCGGACAGACATATGCCTGAATATGCAAAGAAAATTGTTAGCATGTACAACGAGAGTGGAGAAATTGATCAAATGCTTTCCAAAAAGTGAATAATTTGATGGTAGAACTTTGGCATTTGCAACTCAAGCTTTGGTGAACAAAGTTATCCGGTACCTATGCTGGTGGAAGGTAGCAAGTATCCCATAGAGTAGTCGAGGTGCGTGCGAGCTAACCCGTACACCATGGTTATCAAAAAAATGTTGGTGATTGCAACTCTTCATGTACGTGTATAGTGTCTAATTAAACACACATCAGAATTAACTCTTTTTGATAGAATTGTAATTCCTTTTATAATAATTAACTATGTTGACCATTGGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539792" ref_strand="+" ref_description="SGN-E539792 [TUS-59-L18]">
      <seq>ttttttcagggtaagcggcgtccatttgtcgtggaaaccgtgaaggcagatgatgaagcaaaatttggaagaggtccttctcaacctgctccaaagtttgttggaaatttaatagcatttcttctcaacatagtcggaccgaagggtctagaatttgcacgttactcgctagattatcacacaatcagaaattacttaaacgtagtccgcaaatggggaaaagaaagagcggacagacatatgcctgaatatgcaaagaaaattgttagcatgtacaacgagagtggagaaattgatcaaatgctttccaaaaagtgaataatttgatggtagaactttggcatttgcaactcaagctttggtgaacaaagttatccggtacctatgctggtggaaggtagcaagtatcccatagagtagtcgaggtgcgtgcgagctaacccgtacaccatggttatcaaaaaaatgttggtgattgcaactcttcatgtacgtgtatagtgtctaattaaacacacatcagaattaactctttttgatagaattgtaattccttttataataattaactatgttgaccattggtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="+" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="5148" stop="6959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5448" g_stop="5514" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5515" i_stop="5970" i_length="456">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.535" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5971" g_stop="6035" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="132" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6036" i_stop="6118" i_length="83">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6119" g_stop="6213" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="227" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6214" i_stop="6292" i_length="79">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6293" g_stop="6661" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="596" r_length="369" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="+" ref_id="SGN-E539792" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5448" e_stop="5514"/>
          <exon e_start="5971" e_stop="6035"/>
          <exon e_start="6119" e_stop="6213"/>
          <exon e_start="6293" e_stop="6661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCAGGGTAAGCGGCGTCCATTTGTCGTGGAAACCGTGAAGGCAGATGATGAAGCAAAATTTGGTATGTGGTATTTTGTGATATTTATTCATTTCATAAGTTGTTACTAAGCTGGCTCTCTCTGTACACATACTGCTGCTGGTTCAGAATTAGATATCTGCTCTCGGGTTTTGTACTGTTCTTTGTTGGGTCCATGTGCAAGTATCAAACATCTGACCTTTTTCCCTATCCCTTTTCGCTTTGAATGCTGTTAAAAAGTATGAAATGTTACACATCTCATCGACTGTTTATTTAAGATTAACCTTAATTTGTTTTAATCCTTGTAAGTCAAGTGAATTTAGCTATTTAAGTTGCTTCAATTACTTCATTTGTTATGATACTCCCCGTTGATTACAGTATGCTGAAGGCAGAACCCCGAGAAGTAAATCCTTTTCTGACATGTTCTTGAAGTAAATATTTTTGTTGAACAACTTCTCAGTAATCTCACAAGACTTATGCAGAAACTTTCTGAATTTCCAGGAAGAGGTCCTTCTCAACCTGCTCCAAAGTTTGTTGGAAATTTAATAGCATTTCTTCTCAACATAGTAAGAACTTTTTGTTCACTGACTTGTTACTTTCAGAAAGGACAACAAATTCCCTGTGCTTAAACTTGTTTGTCTTGGTTCAGGTCGGACCGAAGGGTCTAGAATTTGCACGTTACTCGCTAGATTATCACACAATCAGAAATTACTTAAACGTAGTCCGCAAATGGGGAAAAGAAAGGTCTGTAGAAATTCATATTTGTTCCATTATGATGGATTACATTAATTTTTTCTCACACGTGTTTTTTGTGTAATTGCAGAGCGGACAGACATATGCCTGAATATGCAAAGAAAATTGTTAGCATGTACAACGAGAGTGGAGAAATTGATCAAATGCTTTCCAAAAAGTGAATAATTTGATGGTAGAACTTTGGCATTTGCAACTCAAGCTTTGGTGAACAAAGTTATCCGGTACCTATGCTGGTGGAAGGTAGCAAGTATCCCATAGAGTAGTCGAGGTGCGTGCGAGCTAACCCGTACACCATGGTTATCAAAAAAATGTTGGTGATTGCAACTCTTCATGTACGTGTATAGTGTCTAATTAAACACACATCAGAATTAACTCTTTTTGATAGAATTGTAATTCCTTTTATAATAATTAACTATGTTGACCATTGGTAAAAACAACT</genome_strand>
        <mrna_strand>TTTTTTCAGGGTAAGCGGCGTCCATTTGTCGTGGAAACCGTGAAGGCAGATGATGAAGCAAAATTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGGTCCTTCTCAACCTGCTCCAAAGTTTGTTGGAAATTTAATAGCATTTCTTCTCAACATA...................................................................................GTCGGACCGAAGGGTCTAGAATTTGCACGTTACTCGCTAGATTATCACACAATCAGAAATTACTTAAACGTAGTCCGCAAATGGGGAAAAGAAAG...............................................................................AGCGGACAGACATATGCCTGAATATGCAAAGAAAATTGTTAGCATGTACAACGAGAGTGGAGAAATTGATCAAATGCTTTCCAAAAAGTGAATAATTTGATGGTAGAACTTTGGCATTTGCAACTCAAGCTTTGGTGAACAAAGTTATCCGGTACCTATGCTGGTGGAAGGTAGCAAGTATCCCATAGAGTAGTCGAGGTGCGTGCGAGCTAACCCGTACACCATGGTTATCAAAAAAATGTTGGTGATTGCAACTCTTCATGTACGTGTATAGTGTCTAATTAAACACACATCAGAATTAACTCTTTTTGATAGAATTGTAATTCCTTTTATAATAATTAACTATGTTGACCATTGGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284638" ref_strand="+" ref_description="SGN-E284638 [cLES-3-J4]">
      <seq>tttttcagggtaagcggcgtccatttgtcgtggaaaccgtgaaggcagatgatgaagcaaaatttggaagaggtccttctcaacctgctccaaagtttgttggaaatttaatagcatttcttctcaacatagtcggaccgaagggtctagaatttgcacgttactcgctagattatcacacaatcagaaattacttaaacgtagtccgcaaatggggaaaagaaagagcggacagacatatgcctgaatatgcaaagaaaattgttagcatgtacaacgagagtggagaaattgatcaaatgctttccaaaaagtgaataatttgatggtagaactttggcatttgcaactcaagctttggtgaacaaagttatccggtacctatgctggtggaaggtagcaagtatcccatagagtagtcgaggtgcgtgcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="+" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="5149" stop="6801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5449" g_stop="5514" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5515" i_stop="5970" i_length="456">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.535" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5971" g_stop="6035" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="131" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6036" i_stop="6118" i_length="83">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6119" g_stop="6213" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="226" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6214" i_stop="6292" i_length="79">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6293" g_stop="6501" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="435" r_length="209" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="+" ref_id="SGN-E284638" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5449" e_stop="5514"/>
          <exon e_start="5971" e_stop="6035"/>
          <exon e_start="6119" e_stop="6213"/>
          <exon e_start="6293" e_stop="6501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCAGGGTAAGCGGCGTCCATTTGTCGTGGAAACCGTGAAGGCAGATGATGAAGCAAAATTTGGTATGTGGTATTTTGTGATATTTATTCATTTCATAAGTTGTTACTAAGCTGGCTCTCTCTGTACACATACTGCTGCTGGTTCAGAATTAGATATCTGCTCTCGGGTTTTGTACTGTTCTTTGTTGGGTCCATGTGCAAGTATCAAACATCTGACCTTTTTCCCTATCCCTTTTCGCTTTGAATGCTGTTAAAAAGTATGAAATGTTACACATCTCATCGACTGTTTATTTAAGATTAACCTTAATTTGTTTTAATCCTTGTAAGTCAAGTGAATTTAGCTATTTAAGTTGCTTCAATTACTTCATTTGTTATGATACTCCCCGTTGATTACAGTATGCTGAAGGCAGAACCCCGAGAAGTAAATCCTTTTCTGACATGTTCTTGAAGTAAATATTTTTGTTGAACAACTTCTCAGTAATCTCACAAGACTTATGCAGAAACTTTCTGAATTTCCAGGAAGAGGTCCTTCTCAACCTGCTCCAAAGTTTGTTGGAAATTTAATAGCATTTCTTCTCAACATAGTAAGAACTTTTTGTTCACTGACTTGTTACTTTCAGAAAGGACAACAAATTCCCTGTGCTTAAACTTGTTTGTCTTGGTTCAGGTCGGACCGAAGGGTCTAGAATTTGCACGTTACTCGCTAGATTATCACACAATCAGAAATTACTTAAACGTAGTCCGCAAATGGGGAAAAGAAAGGTCTGTAGAAATTCATATTTGTTCCATTATGATGGATTACATTAATTTTTTCTCACACGTGTTTTTTGTGTAATTGCAGAGCGGACAGACATATGCCTGAATATGCAAAGAAAATTGTTAGCATGTACAACGAGAGTGGAGAAATTGATCAAATGCTTTCCAAAAAGTGAATAATTTGATGGTAGAACTTTGGCATTTGCAACTCAAGCTTTGGTGAACAAAGTTATCCGGTACCTATGCTGGTGGAAGGTAGCAAGTATCCCATAGAGTAGTCGAGGTGCGTGCGAG</genome_strand>
        <mrna_strand>TTTTTCAGGGTAAGCGGCGTCCATTTGTCGTGGAAACCGTGAAGGCAGATGATGAAGCAAAATTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGGTCCTTCTCAACCTGCTCCAAAGTTTGTTGGAAATTTAATAGCATTTCTTCTCAACATA...................................................................................GTCGGACCGAAGGGTCTAGAATTTGCACGTTACTCGCTAGATTATCACACAATCAGAAATTACTTAAACGTAGTCCGCAAATGGGGAAAAGAAAG...............................................................................AGCGGACAGACATATGCCTGAATATGCAAAGAAAATTGTTAGCATGTACAACGAGAGTGGAGAAATTGATCAAATGCTTTCCAAAAAGTGAATAATTTGATGGTAGAACTTTGGCATTTGCAACTCAAGCTTTGGTGAACAAAGTTATCCGGTACCTATGCTGGTGGAAGGTAGCAAGTATCCCATAGAGTAGTCGAGGTGCGTGCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E389666" ref_strand="+" ref_description="SGN-E389666 [TUS-4-M9](-)">
      <seq>caaaagattaaaacaggagacataaagatagttccagcaatcaaaaaattttctcaaggaaaagtagaatttgtcaatggagaaatacaagaaattgattgtatcattttggcaacaggatattgcagcaatgttccttcttggttaaaggaaagtgaattcttttcaagggagggatttccaagaagtccatttccaaatggatggaaaggaaaagctggtttatatgcagttggatttacaaagagaggactttctggtgcatctttggatgcaattaaagtatcacaagatattggaaaaatttggaaagaagaaattaaacagaaaaatcaatctgttgctgttgcatgtcatagaagaaacaagttatcttccttctagtaaacgacaacaacatactcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="11936" stop="10573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11636" g_stop="11487" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11486" i_stop="11138" i_length="349">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11137" g_stop="10873" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="406" r_length="256" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E389666" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.022" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11636" e_stop="11487"/>
          <exon e_start="11137" e_stop="10873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGATTAAAACAGGAGACATAAAGATAGTTCCAGCAATCAAAAAATTTTCTCAAGGAAAAGTAGAATTTGTCAATGGAGAAATACAAGAAATTGATTGTATCATTTTGGCAACAGGATATTGCAGCAATGTTCCTTCTTGGTTAAAGGTAAGAAAAAAAATATTTTTTTATTTTTATTTTGGTTGTGTATTTATTTTTTAATTTATGGATTGTTGTGACAGTTATGGAAGTTGGTTTTTTTCTTTTGTAGATTCTCTGTTCCTATTTCTTGTAGCATTGTTATGTATGATCAGGTGGATGATACACGTATTCTTTTATACTATGGTAATTAATATTTTCAGAAACAAGATTGAGCTTTCCAAGAAAATAGTTGAATGGATTAGATCAGAGATCTGAGCAGCAAATAAAATTCTGTTTTTTGTCCTTTTTTCTATGTTCAAGAATTATTTTCATTGAATTTTGGTATAATGAGTTTGTATTCATTTTTAAAATGCAGGAAAGTGAATTCTTTTCAAGGGGAGGGATTTCCAAGAAGTCCATTTCCAAATGGATGGAAAGGAAAAGCTGGTTTATATGCAGTTGGATTTACAAAGAGAGGACTTTTCTGGTGCATCTTTGGATGCAATTAAAGTATCACAAGATATTGGAAAAAATTTGGAAAGAAAGAAAATTAAAACAAGAAAAAATACAATCTGTTGCTGTTGCATGTCATAGAAGAAACAAGTTATCTTCCTTCTAGTAAACGACAACAACATACTCAG</genome_strand>
        <mrna_strand>CAAAAGATTAAAACAGGAGACATAAAGATAGTTCCAGCAATCAAAAAATTTTCTCAAGGAAAAGTAGAATTTGTCAATGGAGAAATACAAGAAATTGATTGTATCATTTTGGCAACAGGATATTGCAGCAATGTTCCTTCTTGGTTAAAG.............................................................................................................................................................................................................................................................................................................................................................GAAAGTGAATTCTTTTCAA-GGGAGGGATTTCCAAGAAGTCCATTTCCAAATGGATGGAAAGGAAAAGCTGGTTTATATGCAGTTGGATTTACAAAGAGAGGAC-TTTCTGGTGCATCTTTGGATGCAATTAAAGTATCACAAGATATTGG-AAAAATTTGGAAAG-AAG-AAATT-AAAC-AG-AAAAAT-CAATCTGTTGCTGTTGCATGTCATAGAAGAAACAAGTTATCTTCCTTCTAGTAAACGACAACAACATACTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550030" ref_strand="+" ref_description="SGN-E550030 [TUS-5-M9]">
      <seq>catgcttgtgactataaaacaggggaagtttatgaagggaagaatgtgttcgttgttggatgtggtaattcaggcatggaagtttcacttgatctttgtcaccataatgcaagtccattcatggtcgttcgaagctcggttcatgttttaccaagggaaatactcggaaaatcaacgtttgagttaggagtatcaatgatgaaatggctatcaattgatgtagttgacaagatattactagttgcagcaaggttacttcttggaaacatagaaaagtatggtttaaaaaggccatccattggacctttacaactcaagaatacagaaggaaaaactccagttctagacataggtgcattacaaaagattaaaacaggagacataaagatagttccagcaatcaaaaaattttctcaaggaaaagtagaatttgtcaatggagaaatacaagaaattgattgtatcattttggcaacaggatattgcagcaatgttccttcttggttaaaggaaagtgaattcttttcaagggagggatttccaagaagtccatttccaaatggatggaaaggaaaagctggtttatatgcagttggatttacaaagagaggactttctggtgcatctttggatgcnattaaagtatcacaagaatattggaaaatttggaaagaagaaattaaacagaaaatcaatctgttgctgttgcatgtcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="12696" stop="10622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12396" g_stop="12259" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12258" i_stop="11859" i_length="400">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11858" g_stop="11487" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="510" r_length="372" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11486" i_stop="11138" i_length="349">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11137" g_stop="10922" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="716" r_length="206" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E550030" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12396" e_stop="12259"/>
          <exon e_start="11858" e_stop="11487"/>
          <exon e_start="11137" e_stop="10922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGCTTGTGACTATAAAACAGGGGAAGTTTATGAAGGGAAGAATGTGTTAGTTGTTGGATGTGGTAATTCAGGCATGGAAGTTTCACTTGATCTTTGTCACCATAATGCAAGTCCATTCATGGTCGTTCGAAGCTCGGTAAGTCTCATTCATCTAATCCAAAATCTTTCATGACTTACATCTGCTAAAGAAGAAAAAAAAAAACACTCAATTTCCTTCATAAATCTGCACACGACATATCGAATTCCTCATGACACATACATAAGAGGTCACTCCTTTAATAATCTACATGATTTACGTTTTCTAAGAGAAAAAAACACTCAATTAACTTGAGCGCGTTTTGTCTATGTCCTTCATTTGCCAGAAAATCTGCACTTGACATCTCTAATTCCTCATCACAAGTCTATATATATAATCATCATATGATATGTAATGAAATAATCAATCTAGAAAATCTGCACCTGACATCGCTAATTCCTCATCACAAATATATAATCATATGATATCTAATGAAATAATCAATCTTTTCATGAAACAGGTTCATGTTTTACCAAGGGAAATACTCGGAAAATCAACGTTTGAGTTAGGAGTATCAATGATGAAATGGCTATCAATTGATGTAGTTGACAAGATATTACTAGTTGCAGCAAGGTTACTTCTTGGAAACATAGAAAAGTATGGTTTAAAAAGGCCATCCATTGGACCTTTACAACTCAAGAATACAGAAGGAAAAACTCCAGTTCTAGACATAGGTGCATTACAAAAGATTAAAACAGGAGACATAAAGATAGTTCCAGCAATCAAAAAATTTTCTCAAGGAAAAGTAGAATTTGTCAATGGAGAAATACAAGAAATTGATTGTATCATTTTGGCAACAGGATATTGCAGCAATGTTCCTTCTTGGTTAAAGGTAAGAAAAAAAATATTTTTTTATTTTTATTTTGGTTGTGTATTTATTTTTTAATTTATGGATTGTTGTGACAGTTATGGAAGTTGGTTTTTTTCTTTTGTAGATTCTCTGTTCCTATTTCTTGTAGCATTGTTATGTATGATCAGGTGGATGATACACGTATTCTTTTATACTATGGTAATTAATATTTTCAGAAACAAGATTGAGCTTTCCAAGAAAATAGTTGAATGGATTAGATCAGAGATCTGAGCAGCAAATAAAATTCTGTTTTTTGTCCTTTTTTCTATGTTCAAGAATTATTTTCATTGAATTTTGGTATAATGAGTTTGTATTCATTTTTAAAATGCAGGAAAGTGAATTCTTTTCAAGGGGAGGGATTTCCAAGAAGTCCATTTCCAAATGGATGGAAAGGAAAAGCTGGTTTATATGCAGTTGGATTTACAAAGAGAGGACTTTTCTGGTGCATCTTTGGATGCAATTAAAGTATCACAAG-ATATTGGAAAAAATTTGGAAAGAAAGAAAATTAAAACAAGAAAAAATACAATCTGTTGCTGTTGCATGTCAT</genome_strand>
        <mrna_strand>CATGCTTGTGACTATAAAACAGGGGAAGTTTATGAAGGGAAGAATGTGTTCGTTGTTGGATGTGGTAATTCAGGCATGGAAGTTTCACTTGATCTTTGTCACCATAATGCAAGTCCATTCATGGTCGTTCGAAGCTCG................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATGTTTTACCAAGGGAAATACTCGGAAAATCAACGTTTGAGTTAGGAGTATCAATGATGAAATGGCTATCAATTGATGTAGTTGACAAGATATTACTAGTTGCAGCAAGGTTACTTCTTGGAAACATAGAAAAGTATGGTTTAAAAAGGCCATCCATTGGACCTTTACAACTCAAGAATACAGAAGGAAAAACTCCAGTTCTAGACATAGGTGCATTACAAAAGATTAAAACAGGAGACATAAAGATAGTTCCAGCAATCAAAAAATTTTCTCAAGGAAAAGTAGAATTTGTCAATGGAGAAATACAAGAAATTGATTGTATCATTTTGGCAACAGGATATTGCAGCAATGTTCCTTCTTGGTTAAAG.............................................................................................................................................................................................................................................................................................................................................................GAAAGTGAATTCTTTTCAA-GGGAGGGATTTCCAAGAAGTCCATTTCCAAATGGATGGAAAGGAAAAGCTGGTTTATATGCAGTTGGATTTACAAAGAGAGGAC-TTTCTGGTGCATCTTTGGATGCNATTAAAGTATCACAAGAATATTGG--AAAATTTGGAAAG-AAG-AAATT-AAAC-AG--AAAAT-CAATCTGTTGCTGTTGCATGTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E389924" ref_strand="+" ref_description="SGN-E389924 [TUS-4-M9]">
      <seq>catgcttgtgactataaaacaggggaagtttatgaagggaagaatgtgttagttgttggatgtggtaattcaggcatggaagtttcacttgatctttgtcaccataatgcaagtccattcatggtcgttcgaagctcggttcatgttttaccaagggaaatactcggaaaatcaacgtttgagttaggagtatcaatgatgaaatggctatcaattgatgtagttgacaagatattactagttgcagcaaggttacttcttggaaacatagaaaagtatggtttaaaaaggccatccattggacctttacaactcaagaatacagaaggaaaaactccagttctagacataggtgcattacaaaagattaaaacaggagacataaagatagttccagcaatcaaaaaattttctcaaggaaaagtagaatttgtcaatggagaaatacaagaaattgattgtatcattttggcaacaggatattgcagcaatgttccttcttggttaaaggaaagtgaattcttttcaagggagggatttccaagaagtccatttccaaatggatggaaaggaaaagctggtttatatgcagttggatttacaaagagaggactttctggtgcatctttggatgcaaattaagtatcacaagatattggaaaaatttgggaaagaagaattaacagaaaaatcaatctgttgctgttgcatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="12696" stop="10624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12396" g_stop="12259" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12258" i_stop="11859" i_length="400">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11858" g_stop="11487" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="510" r_length="372" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11486" i_stop="11138" i_length="349">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11137" g_stop="10924" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="714" r_length="204" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E389924" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12396" e_stop="12259"/>
          <exon e_start="11858" e_stop="11487"/>
          <exon e_start="11137" e_stop="10924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGCTTGTGACTATAAAACAGGGGAAGTTTATGAAGGGAAGAATGTGTTAGTTGTTGGATGTGGTAATTCAGGCATGGAAGTTTCACTTGATCTTTGTCACCATAATGCAAGTCCATTCATGGTCGTTCGAAGCTCGGTAAGTCTCATTCATCTAATCCAAAATCTTTCATGACTTACATCTGCTAAAGAAGAAAAAAAAAAACACTCAATTTCCTTCATAAATCTGCACACGACATATCGAATTCCTCATGACACATACATAAGAGGTCACTCCTTTAATAATCTACATGATTTACGTTTTCTAAGAGAAAAAAACACTCAATTAACTTGAGCGCGTTTTGTCTATGTCCTTCATTTGCCAGAAAATCTGCACTTGACATCTCTAATTCCTCATCACAAGTCTATATATATAATCATCATATGATATGTAATGAAATAATCAATCTAGAAAATCTGCACCTGACATCGCTAATTCCTCATCACAAATATATAATCATATGATATCTAATGAAATAATCAATCTTTTCATGAAACAGGTTCATGTTTTACCAAGGGAAATACTCGGAAAATCAACGTTTGAGTTAGGAGTATCAATGATGAAATGGCTATCAATTGATGTAGTTGACAAGATATTACTAGTTGCAGCAAGGTTACTTCTTGGAAACATAGAAAAGTATGGTTTAAAAAGGCCATCCATTGGACCTTTACAACTCAAGAATACAGAAGGAAAAACTCCAGTTCTAGACATAGGTGCATTACAAAAGATTAAAACAGGAGACATAAAGATAGTTCCAGCAATCAAAAAATTTTCTCAAGGAAAAGTAGAATTTGTCAATGGAGAAATACAAGAAATTGATTGTATCATTTTGGCAACAGGATATTGCAGCAATGTTCCTTCTTGGTTAAAGGTAAGAAAAAAAATATTTTTTTATTTTTATTTTGGTTGTGTATTTATTTTTTAATTTATGGATTGTTGTGACAGTTATGGAAGTTGGTTTTTTTCTTTTGTAGATTCTCTGTTCCTATTTCTTGTAGCATTGTTATGTATGATCAGGTGGATGATACACGTATTCTTTTATACTATGGTAATTAATATTTTCAGAAACAAGATTGAGCTTTCCAAGAAAATAGTTGAATGGATTAGATCAGAGATCTGAGCAGCAAATAAAATTCTGTTTTTTGTCCTTTTTTCTATGTTCAAGAATTATTTTCATTGAATTTTGGTATAATGAGTTTGTATTCATTTTTAAAATGCAGGAAAGTGAATTCTTTTCAAGGGGAGGGATTTCCAAGAAGTCCATTTCCAAATGGATGGAAAGGAAAAGCTGGTTTATATGCAGTTGGATTTACAAAGAGAGGACTTTTCTGGTGCATCTTTGGATGCAATTAAAGTATCACAAGATATTGGAAAAAATTTGGAAAGAAAGAAAATTAAAACAAGAAAAAATACAATCTGTTGCTGTTGCATGTC</genome_strand>
        <mrna_strand>CATGCTTGTGACTATAAAACAGGGGAAGTTTATGAAGGGAAGAATGTGTTAGTTGTTGGATGTGGTAATTCAGGCATGGAAGTTTCACTTGATCTTTGTCACCATAATGCAAGTCCATTCATGGTCGTTCGAAGCTCG................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATGTTTTACCAAGGGAAATACTCGGAAAATCAACGTTTGAGTTAGGAGTATCAATGATGAAATGGCTATCAATTGATGTAGTTGACAAGATATTACTAGTTGCAGCAAGGTTACTTCTTGGAAACATAGAAAAGTATGGTTTAAAAAGGCCATCCATTGGACCTTTACAACTCAAGAATACAGAAGGAAAAACTCCAGTTCTAGACATAGGTGCATTACAAAAGATTAAAACAGGAGACATAAAGATAGTTCCAGCAATCAAAAAATTTTCTCAAGGAAAAGTAGAATTTGTCAATGGAGAAATACAAGAAATTGATTGTATCATTTTGGCAACAGGATATTGCAGCAATGTTCCTTCTTGGTTAAAG.............................................................................................................................................................................................................................................................................................................................................................GAAAGTGAATTCTTTTCAA-GGGAGGGATTTCCAAGAAGTCCATTTCCAAATGGATGGAAAGGAAAAGCTGGTTTATATGCAGTTGGATTTACAAAGAGAGGAC-TTTCTGGTGCATCTTTGGATGCAAATTAAGTATCACAAGATATTGGAAAAATTTGGGAAAG-AAG--AATT--AAC-AG-AAAAAT-CAATCTGTTGCTGTTGCATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243215" ref_strand="+" ref_description="SGN-E243215 [cLEE-2-E2]">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="+" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="26018" stop="27059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26318" g_stop="26757" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="+" ref_id="SGN-E243215" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26318" e_stop="26757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGTAGATGACCAAATTTTTTTCCGAATACGAAATTAAATTACAATACACAC-AAAACAATAGTTTAATTTTTTTTCTTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGGATAAGAAACTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAAAATATACCTTGAACTTTTATAGAAGAATCATATGTACCACTAAATAATTTTTTT---TAAAAATTATAAGTAATAAATATAAATTTAAAACTAATTATTTAACTTTCGTCAAATGAAGGGTATATGTGAGCCATTTTGTAACGGTAGGTGTATATGTGAGCCATTTGTATAACGGTAAGGGCATATATGAGCCACTTTCATAACGAGGGATGTATCAGCTCCAAATGACAAAGTTGAGGGGTATATCAGACCCTTTTCCCT</genome_strand>
        <mrna_strand>TTATTGTAGATGACCAATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATATTTGAATTTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATG-AAAAAATT--AAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702488" ref_strand="+" ref_description="SGN-E702488 [FA18DE01]">
      <seq>agttgtcataccagctggcgttccgagaaagcctggtatgacacgggacgacttgttcaacataaatgctaatattgtgaaaagcttggttgaggctgttgctgacaattgcccagatgcctttatccacattatcagcaatccagtcaactccacagtgccgattgctgccgaggttctgaagcaaaagggtgtgtatgatcctaaaaaactctttggtgttaccaccctggacgttgtcagagcaaacacattcgtcgcgcagaagaaaaacctgaaactcattgacgttgacgtccccgtgattcgtgggcatgcagggataacaattctgccattgctgtcaaagacaagaccatcaactactttcacggacgaagaagtgcaggaactaaccgtgaggatccaaaacgctgggaccgaggtcgttgaagcaaaggctggagcaggatctgcaacactgtcaatggcatatgctgcagctagatttgttgaatcctcacttcgtgcccttgacggtgatgctgatgtttacgagtgttcttacgttcaatctgacctgacggaacttccattctttgcatcacgagttaaactaggaaggaatggaatcgaggcattgatttcgtctgatctccgtggattaactgagtatgaacagaaggcattagaagctctaaagatagagttgaaagctagcattgagaaagggatagcttatgctcaaaaacaaacagtgagtgcttagagaaagagtttagtttagattaactataggaaaagattctcaacatgacaatttttgcatggtttgaacttactaagccctttattctttttattggtctgaactctactagtgntttgttattgcttccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="53574" stop="52094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53274" g_stop="52394" g_length="881"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="881" r_length="881" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E702488" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>881</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53274" e_stop="52394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGTCATACCAGCTGGCGTTCCGAGAAAGCCTGGTATGACACGGGACGACTTGTTCAACATAAATGCTAATATTGTGAAAAGCTTGGTTGAGGCTGTTGCTGACAATTGCCCAGATGCCTTTATCCACATTATCAGCAATCCAGTCAACTCCACAGTGCCGATTGCTGCCGAGGTTCTGAAGCAAAAGGGTGTGTATGATCCTAAAAAACTCTTTGGTGTTACCACCCTGGACGTTGTCAGAGCAAACACATTCGTCGCGCAGAAGAAAAACCTGAAACTCATTGACGTTGACGTCCCCGTGATTGGTGGGCATGCAGGGATAACAATTCTGCCATTGCTGTCAAAGACAAGACCATCAACTACTTTCACGGACGAAGAAGTGCAGGAACTAACCGTGAGGATCCAAAACGCTGGGACCGAGGTCGTTGAAGCAAAGGCTGGAGCAGGATCTGCAACACTGTCAATGGCATATGCTGCAGCTAGATTTGTTGAATCCTCACTTCGTGCCCTTGACGGTGATGCTGATGTTTACGAGTGTTCTTACGTTCAATCTGACCTGACGGAACTTCCATTCTTTGCATCACGAGTTAAACTAGGAAGGAATGGAATCGAGGCATTGATTTCGTCTGATCTCCGTGGATTAACTGAGTATGAACAGAAGGCATTAGAAGCTCTAAAGATAGAGTTGAAAGCTAGCATTGAGAAAGGGATAGCTTATGCTCAAAAACAAACAGTGAGTGCTTAGAGAAAGAGTTTAGTTTAGATTAACTATAGGAAAAGATTCTCAACATGACAATTTTTGCATGGTTTGAACTTACTAAGCCCTTTATTCTTTTTATTGGTCTGAACTCTACTAGTGTTTTGTTATTGCTTCCTTT</genome_strand>
        <mrna_strand>AGTTGTCATACCAGCTGGCGTTCCGAGAAAGCCTGGTATGACACGGGACGACTTGTTCAACATAAATGCTAATATTGTGAAAAGCTTGGTTGAGGCTGTTGCTGACAATTGCCCAGATGCCTTTATCCACATTATCAGCAATCCAGTCAACTCCACAGTGCCGATTGCTGCCGAGGTTCTGAAGCAAAAGGGTGTGTATGATCCTAAAAAACTCTTTGGTGTTACCACCCTGGACGTTGTCAGAGCAAACACATTCGTCGCGCAGAAGAAAAACCTGAAACTCATTGACGTTGACGTCCCCGTGATTCGTGGGCATGCAGGGATAACAATTCTGCCATTGCTGTCAAAGACAAGACCATCAACTACTTTCACGGACGAAGAAGTGCAGGAACTAACCGTGAGGATCCAAAACGCTGGGACCGAGGTCGTTGAAGCAAAGGCTGGAGCAGGATCTGCAACACTGTCAATGGCATATGCTGCAGCTAGATTTGTTGAATCCTCACTTCGTGCCCTTGACGGTGATGCTGATGTTTACGAGTGTTCTTACGTTCAATCTGACCTGACGGAACTTCCATTCTTTGCATCACGAGTTAAACTAGGAAGGAATGGAATCGAGGCATTGATTTCGTCTGATCTCCGTGGATTAACTGAGTATGAACAGAAGGCATTAGAAGCTCTAAAGATAGAGTTGAAAGCTAGCATTGAGAAAGGGATAGCTTATGCTCAAAAACAAACAGTGAGTGCTTAGAGAAAGAGTTTAGTTTAGATTAACTATAGGAAAAGATTCTCAACATGACAATTTTTGCATGGTTTGAACTTACTAAGCCCTTTATTCTTTTTATTGGTCTGAACTCTACTAGTGNTTTGTTATTGCTTCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577749" ref_strand="+" ref_description="SGN-E577749 [LE15CF11]">
      <seq>taaaaagaataaagggcttagtaagttcaaaccatgcaaaaattgtcatgttgagaatcttttcctatagttaatctaaactaaactctttctctaagcactcactgtttgtttttgagcataagctatccctttctcaatgctagctttcaactctatctttagagcttctaatgccttctgttcatactcagttaatccacggagatcagacgaaatcaatgcctcgattccattccttcctagtttaactcgtgatgcaaagaatggaagttccgtcaggtcagattgaacgtaagaacactcgtaaacatcagcatcaccgtcaagggcacgaagtgaggattcaacaaatctagctgcagcatatgccattgacagtgttgcagatcctgctccagcctttgcttcaacgacctcggtcccagcgttttggatcctcacggttagttcctgcacttcttcgtccgtgaaagtagttgatggtcttgtctttgacagcaatggcagaattgttatccctgcatgcccaccaatcacggggacgtcaacgtcaatgagtttcaggtttttcttctgcgcgacgaatgtgtttgctctgacaacgtccagggtggtaacaccaaagagttttttaggatcatacacacccttttgcttcagaacctccgcagcaatcggcactgtggagttgactggattgctgataatgtggataaaggcatctgggcaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="+" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="52134" stop="53469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52434" g_stop="53169" g_length="736"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="736" r_length="736" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="+" ref_id="SGN-E577749" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52434" e_stop="53169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAAGAATAAAGGGCTTAGTAAGTTCAAACCATGCAAAAATTGTCATGTTGAGAATCTTTTCCTATAGTTAATCTAAACTAAACTCTTTCTCTAAGCACTCACTGTTTGTTTTTGAGCATAAGCTATCCCTTTCTCAATGCTAGCTTTCAACTCTATCTTTAGAGCTTCTAATGCCTTCTGTTCATACTCAGTTAATCCACGGAGATCAGACGAAATCAATGCCTCGATTCCATTCCTTCCTAGTTTAACTCGTGATGCAAAGAATGGAAGTTCCGTCAGGTCAGATTGAACGTAAGAACACTCGTAAACATCAGCATCACCGTCAAGGGCACGAAGTGAGGATTCAACAAATCTAGCTGCAGCATATGCCATTGACAGTGTTGCAGATCCTGCTCCAGCCTTTGCTTCAACGACCTCGGTCCCAGCGTTTTGGATCCTCACGGTTAGTTCCTGCACTTCTTCGTCCGTGAAAGTAGTTGATGGTCTTGTCTTTGACAGCAATGGCAGAATTGTTATCCCTGCATGCCCACCAATCACGGGGACGTCAACGTCAATGAGTTTCAGGTTTTTCTTCTGCGCGACGAATGTGTTTGCTCTGACAACGTCCAGGGTGGTAACACCAAAGAGTTTTTTAGGATCATACACACCCTTTTGCTTCAGAACCTCGGCAGCAATCGGCACTGTGGAGTTGACTGGATTGCTGATAATGTGGATAAAGGCATCTGGGCAATTG</genome_strand>
        <mrna_strand>TAAAAAGAATAAAGGGCTTAGTAAGTTCAAACCATGCAAAAATTGTCATGTTGAGAATCTTTTCCTATAGTTAATCTAAACTAAACTCTTTCTCTAAGCACTCACTGTTTGTTTTTGAGCATAAGCTATCCCTTTCTCAATGCTAGCTTTCAACTCTATCTTTAGAGCTTCTAATGCCTTCTGTTCATACTCAGTTAATCCACGGAGATCAGACGAAATCAATGCCTCGATTCCATTCCTTCCTAGTTTAACTCGTGATGCAAAGAATGGAAGTTCCGTCAGGTCAGATTGAACGTAAGAACACTCGTAAACATCAGCATCACCGTCAAGGGCACGAAGTGAGGATTCAACAAATCTAGCTGCAGCATATGCCATTGACAGTGTTGCAGATCCTGCTCCAGCCTTTGCTTCAACGACCTCGGTCCCAGCGTTTTGGATCCTCACGGTTAGTTCCTGCACTTCTTCGTCCGTGAAAGTAGTTGATGGTCTTGTCTTTGACAGCAATGGCAGAATTGTTATCCCTGCATGCCCACCAATCACGGGGACGTCAACGTCAATGAGTTTCAGGTTTTTCTTCTGCGCGACGAATGTGTTTGCTCTGACAACGTCCAGGGTGGTAACACCAAAGAGTTTTTTAGGATCATACACACCCTTTTGCTTCAGAACCTCCGCAGCAATCGGCACTGTGGAGTTGACTGGATTGCTGATAATGTGGATAAAGGCATCTGGGCAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733525" ref_strand="+" ref_description="SGN-E733525 [LB10BA06]">
      <seq>gtcaaagacaagaccatcaactactttcacggacgaagaagtgcaggaactaaccgtgaggatccaaaacgctgggaccgaggtcgttgaagcaaaggctggagcaggatctgcaacactgtcaatggcatatgctgcagctagatttgttgaatcctcacttcgtgcccttgacggtgatgctgatgtttacgagtgttcttacgttcaatctgacctgacggaacttccattctttgcatcacgagttaaactaggaaggaatggaatcgaggcattgatttcgtctgatctccgtggattaactgagtatgaacagaaggcattagaagctctaaagatagagttgaaagctagcattgagaaagggatagcttatgctcaaaaacaaacagtgagtgcttagagaaagagtttagtttagattaactataggaaaagattctcaacatgacaatttttgcatggtttgaacttactaagccctttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="53232" stop="52143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52932" g_stop="52444" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="490" polyA_stop="508"/>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E733525" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52932" e_stop="52444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAAGACAAGACCATCAACTACTTTCACGGACGAAGAAGTGCAGGAACTAACCGTGAGGATCCAAAACGCTGGGACCGAGGTCGTTGAAGCAAAGGCTGGAGCAGGATCTGCAACACTGTCAATGGCATATGCTGCAGCTAGATTTGTTGAATCCTCACTTCGTGCCCTTGACGGTGATGCTGATGTTTACGAGTGTTCTTACGTTCAATCTGACCTGACGGAACTTCCATTCTTTGCATCACGAGTTAAACTAGGAAGGAATGGAATCGAGGCATTGATTTCGTCTGATCTCCGTGGATTAACTGAGTATGAACAGAAGGCATTAGAAGCTCTAAAGATAGAGTTGAAAGCTAGCATTGAGAAAGGGATAGCTTATGCTCAAAAACAAACAGTGAGTGCTTAGAGAAAGAGTTTAGTTTAGATTAACTATAGGAAAAGATTCTCAACATGACAATTTTTGCATGGTTTGAACTTACTAAGCCCTTT</genome_strand>
        <mrna_strand>GTCAAAGACAAGACCATCAACTACTTTCACGGACGAAGAAGTGCAGGAACTAACCGTGAGGATCCAAAACGCTGGGACCGAGGTCGTTGAAGCAAAGGCTGGAGCAGGATCTGCAACACTGTCAATGGCATATGCTGCAGCTAGATTTGTTGAATCCTCACTTCGTGCCCTTGACGGTGATGCTGATGTTTACGAGTGTTCTTACGTTCAATCTGACCTGACGGAACTTCCATTCTTTGCATCACGAGTTAAACTAGGAAGGAATGGAATCGAGGCATTGATTTCGTCTGATCTCCGTGGATTAACTGAGTATGAACAGAAGGCATTAGAAGCTCTAAAGATAGAGTTGAAAGCTAGCATTGAGAAAGGGATAGCTTATGCTCAAAAACAAACAGTGAGTGCTTAGAGAAAGAGTTTAGTTTAGATTAACTATAGGAAAAGATTCTCAACATGACAATTTTTGCATGGTTTGAACTTACTAAGCCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705044" ref_strand="+" ref_description="SGN-E705044 [FA26AA08]">
      <seq>cttagttatctgcctcggaacctccgaattttataatcttataggtagaagtgaagaaaaaatcagtaaaaattctgagaatttgagtcggtgaaatggcagcagcatcagcaactactctctcagttggttccgccacatcctttggctccatagtgagcccaaaattacaatcaaaggcctttattgcgaaatgcaataccagggactaccttaggagtttcagtggccttaaggcagaggcatttgtacgatgtgaatccgagtcgtcatttctaggaaatgaaagcattgcagctcttcgacaatccattactcctaaagcccgaaaccaaaagcagagatcttcgaaccatgttcagcctcaagcatcttataaagtggctgttctcggagcctctggcggtataggccagcctctagctcttctgattaagatgtcaccgctagtatcatcgttgcacctttatgatattgcaaatgtcaaaggagtcgcagcagatctcagccattgcaacactcccgctcaggtttttgactttacgggagcttctgagttggccaattctttgaaaggtatagatgtagttgtcataccagctggcgttccgagaaagcctggtatgacacgggacgacttgttcaacataaatgctaatattgtgaaaagcttggttgaggctgttgctgacaattgcccagatgcctttatccacattatcagcaatccagtcaactccacagtgccgattgctgccgaggttctgaagcaaaagggtgtgtatgatcctaaaaaactctttggtgttaccaccctggacgttgtcagagcaaacacattcgtcgcgcagaagaaaacctgaaactcattgacgttgacgtccccgtgattggtgggcatgcaggnaatacaattctgccattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="55782" stop="52634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55482" g_stop="55396" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55395" i_stop="53774" i_length="1622">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53773" g_stop="52934" g_length="840"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="926" r_length="839" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E705044" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>927</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55482" e_stop="55396"/>
          <exon e_start="53773" e_stop="52934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAGTTATCTGCCTCGGAACCTCCGAATTTTATAATCTTATAGGTAGAAGTGAAGAAAAAATCAGTAAAAATTCTGAGAATTTGAGGTAATTTTTTATTGTGATTATATATGATTTCCTGAACTTTTTTTTATTGATTTTTTGTTTATTTTCTTGTGCCATTTTGGTGTAATTTGTCAATTTTATGTAGAGTTTTGCTATATTTGATGTTCTTTGTCTGTGTTAGGCTAAAGGGGGTTCTTGAAAAATGAAAAGAAGAATAAAGTTTGAATCTTTTCATTTGATTATTCAATTGAAGGCTGTATTTACCACAAAGAAAGTTAATTTATTTAAGGGGTTAGCTTGATTTGTGATTTCTTCCAATGTGTTCAAGCTTTGGTGGATAGGGTTACTTGGTACCTATATTGGTGGGAGGTAGTAAGTAGCGGGGGAATTAATCGAGGTGCGTGCGAGCTGGTTCAGACACCACAAAGAAAGTTAATTTATTTAAGGCAATGTGTCTAAGCTTTGTTTGGTGGATACTGAATAGGGTTACCTGGTACCAATGATGGTGGGAGGTAGAAGGCACCTGTGGAACTAATCGAGGTGTGTGCAAGCTGGTCCAGACACCACAAAGAAAGTTAATTTATTTAAGGCAATGTGTCCAAGCTTTGTTTGGTGGATAGGGTTACCTTGTAAGGATGCTGGTAGTAGGGTACCCGAGGAATTAGTCGGTTGCATGCAAGTTGGCGTAGACATCACGATATTTAAAAAAGAAAGAGGATATCCCATTCCTAGCAGCCTTAACAGTTGACTGTGGCAGAATTCTCTCTCTGCTGTTGGTCCTTTTAGGATTTCTGCAGAACTGTTCAATTACACTTCGAGGTATCTCACGCGAAATGTTAGGACGTATGTGTCTAGTTGTTTCAACTTTATACAATCAGGTGCATACCCAAAGTTGGAAGGCATAGATGTTAGCTGATGCCAAGTTAAAGGGAAACGTTTATTTATTATGTCTAATATGAATGATACAGTGAATACTTACACTTTTCCTGTCATCAATCTTTCAAAATCGCTGATGCTGTATTTTTCCTGTCTTTTCTGCTGAGCTGAATAGTTGGCTTATATGTTTTACTGGTGTTCCGTGCATATGAGATGATTTAGTACAGTTGTTTGCGAATGTAAACATTTCAAAACGTGTCTTCTATAGCTTGATTTGGATAATAAATGTATGAACTTGGATGCATTGTTTGTTAAACAACTTATTTGACTATTTTTCTTTGTTAGGCTCAAACTCCTTTTCGATGATTTTACACTAGTCGGAAATTTCTTTCTTTTTCCCTGGTTTAGGGGGTCGTGAAGCAATGAACTCCCTTTTCTTTTAATTTTTTCGACAAATCTTATTAACAACCGAAAAATAGACTTTGCTGGTTTCTAAGAGTGAAGTTTTAAAGTGTCCATTTGGGGACATCCGATGAAATTGGAACAATAAGAGTAAATGCTTAAGTAGATCATTATATACTGTGTTTGGTAGAGAGTGTTCACAACATGTTTTAGAATGTAGAATAAGTGCGACACTAAGTAACCCGTTGTTCATCTATTCGTTGTGGTTTGCAATAAATATTCATCGATTATCAGTGTAAAAAACTCCTGAATTTCCTCCCATGTATGTTCTAAAATCGTGTCTTACAATGCATAGAAGAAATTAATGTCAGCGATCCTTTTTGCAGTCGGTGAAATGGCAGCAGCATCAGCAACTACTCTCTCAGTTGGTTCCGCCACATCCTTTGGCTCCATAGTGAGCCCAAAATTACAATCAAAGGCCTTTATTGCGAAATGCAATACCAGGGACTACCTTAGGAGTTTCAGTGGCCTTAAGGCAGAGGCATTTGTACGATGTGAATCCGAGTCGTCATTTCTAGGAAATGAAAGCATTGCAGCTCTTCGACAATCCATTACTCCTAAAGCCCGAAACCAAAAGCAGAGATCTTCGAACCATGTTCAGCCTCAAGCATCTTATAAAGTGGCTGTTCTCGGAGCCTCTGGCGGTATAGGCCAGCCTCTAGCTCTTCTGATTAAGATGTCACCGCTAGTATCATCGTTGCACCTTTATGATATTGCAAATGTCAAAGGAGTCGCAGCAGATCTCAGCCATTGCAACACTCCCGCTCAGGTTTTTGACTTTACGGGAGCTTCTGAGTTGGCCAATTCTTTGAAAGGTATAGATGTAGTTGTCATACCAGCTGGCGTTCCGAGAAAGCCTGGTATGACACGGGACGACTTGTTCAACATAAATGCTAATATTGTGAAAAGCTTGGTTGAGGCTGTTGCTGACAATTGCCCAGATGCCTTTATCCACATTATCAGCAATCCAGTCAACTCCACAGTGCCGATTGCTGCCGAGGTTCTGAAGCAAAAGGGTGTGTATGATCCTAAAAAACTCTTTGGTGTTACCACCCTGGACGTTGTCAGAGCAAACACATTCGTCGCGCAGAAGAAAAACCTGAAACTCATTGACGTTGACGTCCCCGTGATTGGTGGGCATGCAGGGATAACAATTCTGCCATTGC</genome_strand>
        <mrna_strand>CTTAGTTATCTGCCTCGGAACCTCCGAATTTTATAATCTTATAGGTAGAAGTGAAGAAAAAATCAGTAAAAATTCTGAGAATTTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTGAAATGGCAGCAGCATCAGCAACTACTCTCTCAGTTGGTTCCGCCACATCCTTTGGCTCCATAGTGAGCCCAAAATTACAATCAAAGGCCTTTATTGCGAAATGCAATACCAGGGACTACCTTAGGAGTTTCAGTGGCCTTAAGGCAGAGGCATTTGTACGATGTGAATCCGAGTCGTCATTTCTAGGAAATGAAAGCATTGCAGCTCTTCGACAATCCATTACTCCTAAAGCCCGAAACCAAAAGCAGAGATCTTCGAACCATGTTCAGCCTCAAGCATCTTATAAAGTGGCTGTTCTCGGAGCCTCTGGCGGTATAGGCCAGCCTCTAGCTCTTCTGATTAAGATGTCACCGCTAGTATCATCGTTGCACCTTTATGATATTGCAAATGTCAAAGGAGTCGCAGCAGATCTCAGCCATTGCAACACTCCCGCTCAGGTTTTTGACTTTACGGGAGCTTCTGAGTTGGCCAATTCTTTGAAAGGTATAGATGTAGTTGTCATACCAGCTGGCGTTCCGAGAAAGCCTGGTATGACACGGGACGACTTGTTCAACATAAATGCTAATATTGTGAAAAGCTTGGTTGAGGCTGTTGCTGACAATTGCCCAGATGCCTTTATCCACATTATCAGCAATCCAGTCAACTCCACAGTGCCGATTGCTGCCGAGGTTCTGAAGCAAAAGGGTGTGTATGATCCTAAAAAACTCTTTGGTGTTACCACCCTGGACGTTGTCAGAGCAAACACATTCGTCGCGCAGAAG-AAAACCTGAAACTCATTGACGTTGACGTCCCCGTGATTGGTGGGCATGCAGGNAATACAATTCTGCCATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267233" ref_strand="+" ref_description="SGN-E267233 [cLEI-4-F3]">
      <seq>ttgcacctttatgatattgcaaatgtcaaaggagtcgcagcagatctcagccattgcaacactcccgctcaggtttttgactttacgggagcttctgagttggccaattctttgaaaggtatagatgtagttgtcataccagctggcgttccgagaaagcctggtatgacacgggacgacttgttcaacataaatgctaatattgtgaaaagcttggttgaggctgttgctgacaattgcccagatgcctttatccacattatcagcaatccagtcaactccacagtgccgattgctgccgaggttctgaagcaaaagggtgtgtatgatcctaaaaaactctttggtgttaccaccctggacgttgtcagagcaaacacattcgtcgcgcataagaaaaacctgaaactcattgacgttgacgtccccgtgattggtgggcatgcagggataacaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="53702" stop="52644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53402" g_stop="52944" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E267233" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53402" e_stop="52944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCACCTTTATGATATTGCAAATGTCAAAGGAGTCGCAGCAGATCTCAGCCATTGCAACACTCCCGCTCAGGTTTTTGACTTTACGGGAGCTTCTGAGTTGGCCAATTCTTTGAAAGGTATAGATGTAGTTGTCATACCAGCTGGCGTTCCGAGAAAGCCTGGTATGACACGGGACGACTTGTTCAACATAAATGCTAATATTGTGAAAAGCTTGGTTGAGGCTGTTGCTGACAATTGCCCAGATGCCTTTATCCACATTATCAGCAATCCAGTCAACTCCACAGTGCCGATTGCTGCCGAGGTTCTGAAGCAAAAGGGTGTGTATGATCCTAAAAAACTCTTTGGTGTTACCACCCTGGACGTTGTCAGAGCAAACACATTCGTCGCGCAGAAGAAAAACCTGAAACTCATTGACGTTGACGTCCCCGTGATTGGTGGGCATGCAGGGATAACAATT</genome_strand>
        <mrna_strand>TTGCACCTTTATGATATTGCAAATGTCAAAGGAGTCGCAGCAGATCTCAGCCATTGCAACACTCCCGCTCAGGTTTTTGACTTTACGGGAGCTTCTGAGTTGGCCAATTCTTTGAAAGGTATAGATGTAGTTGTCATACCAGCTGGCGTTCCGAGAAAGCCTGGTATGACACGGGACGACTTGTTCAACATAAATGCTAATATTGTGAAAAGCTTGGTTGAGGCTGTTGCTGACAATTGCCCAGATGCCTTTATCCACATTATCAGCAATCCAGTCAACTCCACAGTGCCGATTGCTGCCGAGGTTCTGAAGCAAAAGGGTGTGTATGATCCTAAAAAACTCTTTGGTGTTACCACCCTGGACGTTGTCAGAGCAAACACATTCGTCGCGCATAAGAAAAACCTGAAACTCATTGACGTTGACGTCCCCGTGATTGGTGGGCATGCAGGGATAACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253056" ref_strand="+" ref_description="SGN-E253056 [cLEG-25-M1]">
      <seq>gaaaaaatagtaaaaattctgagaatttgagtcggtgaaatggcagcagcatcagcaactactctctcagttggttccgccacatcctttggctccatagtgagcccaaaattacaatcaaaggcctttattgcgaaatgcaataccagggactaccttaggagtttcagtggccttaaggcagaggcatttgtacgatgtgaatccgagtcgtcatttctaggaaatgaaagcattgcagctcttcgacaatccattactcctaaagcccgaaaccaaaagcagagatcttcgaaccatgttcagcctcaagcatcttataaagtggctgttctcggagcctctggcggtataggccagcctctagctcttctgattaagatgtcaccgctagtatcatcgttgcacctttatgatattgcaaatgtcaaaggagtcgcagcagatctcagccattgcaacactcccgctcaggtttttgactttacgggagcttctgagttggccaattctttgaaaggtatagatgtagttgtcataccagctggcgttccgagaaagcctggtatgacacgggacgacttgttcaacataaatgctaatattgtgaaaagcttggttgaggctgttgctgacaattgcccagatgcctttatccacattatcagcaatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="55727" stop="52831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55427" g_stop="55396" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55395" i_stop="53774" i_length="1622">
            <donor d_prob="0.942" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53773" g_stop="53131" g_length="643"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="674" r_length="643" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E253056" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55427" e_stop="55396"/>
          <exon e_start="53773" e_stop="53131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAATCAGTAAAAATTCTGAGAATTTGAGGTAATTTTTTATTGTGATTATATATGATTTCCTGAACTTTTTTTTATTGATTTTTTGTTTATTTTCTTGTGCCATTTTGGTGTAATTTGTCAATTTTATGTAGAGTTTTGCTATATTTGATGTTCTTTGTCTGTGTTAGGCTAAAGGGGGTTCTTGAAAAATGAAAAGAAGAATAAAGTTTGAATCTTTTCATTTGATTATTCAATTGAAGGCTGTATTTACCACAAAGAAAGTTAATTTATTTAAGGGGTTAGCTTGATTTGTGATTTCTTCCAATGTGTTCAAGCTTTGGTGGATAGGGTTACTTGGTACCTATATTGGTGGGAGGTAGTAAGTAGCGGGGGAATTAATCGAGGTGCGTGCGAGCTGGTTCAGACACCACAAAGAAAGTTAATTTATTTAAGGCAATGTGTCTAAGCTTTGTTTGGTGGATACTGAATAGGGTTACCTGGTACCAATGATGGTGGGAGGTAGAAGGCACCTGTGGAACTAATCGAGGTGTGTGCAAGCTGGTCCAGACACCACAAAGAAAGTTAATTTATTTAAGGCAATGTGTCCAAGCTTTGTTTGGTGGATAGGGTTACCTTGTAAGGATGCTGGTAGTAGGGTACCCGAGGAATTAGTCGGTTGCATGCAAGTTGGCGTAGACATCACGATATTTAAAAAAGAAAGAGGATATCCCATTCCTAGCAGCCTTAACAGTTGACTGTGGCAGAATTCTCTCTCTGCTGTTGGTCCTTTTAGGATTTCTGCAGAACTGTTCAATTACACTTCGAGGTATCTCACGCGAAATGTTAGGACGTATGTGTCTAGTTGTTTCAACTTTATACAATCAGGTGCATACCCAAAGTTGGAAGGCATAGATGTTAGCTGATGCCAAGTTAAAGGGAAACGTTTATTTATTATGTCTAATATGAATGATACAGTGAATACTTACACTTTTCCTGTCATCAATCTTTCAAAATCGCTGATGCTGTATTTTTCCTGTCTTTTCTGCTGAGCTGAATAGTTGGCTTATATGTTTTACTGGTGTTCCGTGCATATGAGATGATTTAGTACAGTTGTTTGCGAATGTAAACATTTCAAAACGTGTCTTCTATAGCTTGATTTGGATAATAAATGTATGAACTTGGATGCATTGTTTGTTAAACAACTTATTTGACTATTTTTCTTTGTTAGGCTCAAACTCCTTTTCGATGATTTTACACTAGTCGGAAATTTCTTTCTTTTTCCCTGGTTTAGGGGGTCGTGAAGCAATGAACTCCCTTTTCTTTTAATTTTTTCGACAAATCTTATTAACAACCGAAAAATAGACTTTGCTGGTTTCTAAGAGTGAAGTTTTAAAGTGTCCATTTGGGGACATCCGATGAAATTGGAACAATAAGAGTAAATGCTTAAGTAGATCATTATATACTGTGTTTGGTAGAGAGTGTTCACAACATGTTTTAGAATGTAGAATAAGTGCGACACTAAGTAACCCGTTGTTCATCTATTCGTTGTGGTTTGCAATAAATATTCATCGATTATCAGTGTAAAAAACTCCTGAATTTCCTCCCATGTATGTTCTAAAATCGTGTCTTACAATGCATAGAAGAAATTAATGTCAGCGATCCTTTTTGCAGTCGGTGAAATGGCAGCAGCATCAGCAACTACTCTCTCAGTTGGTTCCGCCACATCCTTTGGCTCCATAGTGAGCCCAAAATTACAATCAAAGGCCTTTATTGCGAAATGCAATACCAGGGACTACCTTAGGAGTTTCAGTGGCCTTAAGGCAGAGGCATTTGTACGATGTGAATCCGAGTCGTCATTTCTAGGAAATGAAAGCATTGCAGCTCTTCGACAATCCATTACTCCTAAAGCCCGAAACCAAAAGCAGAGATCTTCGAACCATGTTCAGCCTCAAGCATCTTATAAAGTGGCTGTTCTCGGAGCCTCTGGCGGTATAGGCCAGCCTCTAGCTCTTCTGATTAAGATGTCACCGCTAGTATCATCGTTGCACCTTTATGATATTGCAAATGTCAAAGGAGTCGCAGCAGATCTCAGCCATTGCAACACTCCCGCTCAGGTTTTTGACTTTACGGGAGCTTCTGAGTTGGCCAATTCTTTGAAAGGTATAGATGTAGTTGTCATACCAGCTGGCGTTCCGAGAAAGCCTGGTATGACACGGGACGACTTGTTCAACATAAATGCTAATATTGTGAAAAGCTTGGTTGAGGCTGTTGCTGACAATTGCCCAGATGCCTTTATCCACATTATCAGCAATCC</genome_strand>
        <mrna_strand>GAAAAAAT-AGTAAAAATTCTGAGAATTTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTGAAATGGCAGCAGCATCAGCAACTACTCTCTCAGTTGGTTCCGCCACATCCTTTGGCTCCATAGTGAGCCCAAAATTACAATCAAAGGCCTTTATTGCGAAATGCAATACCAGGGACTACCTTAGGAGTTTCAGTGGCCTTAAGGCAGAGGCATTTGTACGATGTGAATCCGAGTCGTCATTTCTAGGAAATGAAAGCATTGCAGCTCTTCGACAATCCATTACTCCTAAAGCCCGAAACCAAAAGCAGAGATCTTCGAACCATGTTCAGCCTCAAGCATCTTATAAAGTGGCTGTTCTCGGAGCCTCTGGCGGTATAGGCCAGCCTCTAGCTCTTCTGATTAAGATGTCACCGCTAGTATCATCGTTGCACCTTTATGATATTGCAAATGTCAAAGGAGTCGCAGCAGATCTCAGCCATTGCAACACTCCCGCTCAGGTTTTTGACTTTACGGGAGCTTCTGAGTTGGCCAATTCTTTGAAAGGTATAGATGTAGTTGTCATACCAGCTGGCGTTCCGAGAAAGCCTGGTATGACACGGGACGACTTGTTCAACATAAATGCTAATATTGTGAAAAGCTTGGTTGAGGCTGTTGCTGACAATTGCCCAGATGCCTTTATCCACATTATCAGCAATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332287" ref_strand="+" ref_description="SGN-E332287 [cTOD-17-D3]">
      <seq>gaattttataatcttataggtagaagtgaagaaaaaatcagtaaaaattctgagaatttgagtcggtgaaatggcagcagcatcagcaactactctctcagttggttccgccacatcctttggctccatagtgagcccaaaattacaatcaaaggcctttattgcgaaatgcaataccagggactaccttaggagtttcagtggccttaaggcagaggcatttgtacgatgtgaatccgagtcgtcatttctaggaaatgaaagcattgcagctcttcgacaatccattactcctaaagcccgaaaccaaaagcagagatcttcgaaccatgttcagcctcaagcatcttataaagtggctgttctcggagcctctggcggtataggccagcctctagctcttctgattaagatgtcaccgctagtatcatcgttgcacctttatgatattgcaaatgtcaaaggagtcgcagcagatctcagccattgcaacactcccgctcaggtttttgactttacgggagcttctgagttggccaattctttgaaaggtatagatgtagttgtcataccagctggcgttccgagaaagcctggtatgacacgggacgacttgnntcacataaatgctaatattgtgaaaagcttgggtgaggctgttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="55757" stop="52872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55457" g_stop="55396" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55395" i_stop="53774" i_length="1622">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53773" g_stop="53172" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="664" r_length="602" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E332287" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55457" e_stop="55396"/>
          <exon e_start="53773" e_stop="53172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTTATAATCTTATAGGTAGAAGTGAAGAAAAAATCAGTAAAAATTCTGAGAATTTGAGGTAATTTTTTATTGTGATTATATATGATTTCCTGAACTTTTTTTTATTGATTTTTTGTTTATTTTCTTGTGCCATTTTGGTGTAATTTGTCAATTTTATGTAGAGTTTTGCTATATTTGATGTTCTTTGTCTGTGTTAGGCTAAAGGGGGTTCTTGAAAAATGAAAAGAAGAATAAAGTTTGAATCTTTTCATTTGATTATTCAATTGAAGGCTGTATTTACCACAAAGAAAGTTAATTTATTTAAGGGGTTAGCTTGATTTGTGATTTCTTCCAATGTGTTCAAGCTTTGGTGGATAGGGTTACTTGGTACCTATATTGGTGGGAGGTAGTAAGTAGCGGGGGAATTAATCGAGGTGCGTGCGAGCTGGTTCAGACACCACAAAGAAAGTTAATTTATTTAAGGCAATGTGTCTAAGCTTTGTTTGGTGGATACTGAATAGGGTTACCTGGTACCAATGATGGTGGGAGGTAGAAGGCACCTGTGGAACTAATCGAGGTGTGTGCAAGCTGGTCCAGACACCACAAAGAAAGTTAATTTATTTAAGGCAATGTGTCCAAGCTTTGTTTGGTGGATAGGGTTACCTTGTAAGGATGCTGGTAGTAGGGTACCCGAGGAATTAGTCGGTTGCATGCAAGTTGGCGTAGACATCACGATATTTAAAAAAGAAAGAGGATATCCCATTCCTAGCAGCCTTAACAGTTGACTGTGGCAGAATTCTCTCTCTGCTGTTGGTCCTTTTAGGATTTCTGCAGAACTGTTCAATTACACTTCGAGGTATCTCACGCGAAATGTTAGGACGTATGTGTCTAGTTGTTTCAACTTTATACAATCAGGTGCATACCCAAAGTTGGAAGGCATAGATGTTAGCTGATGCCAAGTTAAAGGGAAACGTTTATTTATTATGTCTAATATGAATGATACAGTGAATACTTACACTTTTCCTGTCATCAATCTTTCAAAATCGCTGATGCTGTATTTTTCCTGTCTTTTCTGCTGAGCTGAATAGTTGGCTTATATGTTTTACTGGTGTTCCGTGCATATGAGATGATTTAGTACAGTTGTTTGCGAATGTAAACATTTCAAAACGTGTCTTCTATAGCTTGATTTGGATAATAAATGTATGAACTTGGATGCATTGTTTGTTAAACAACTTATTTGACTATTTTTCTTTGTTAGGCTCAAACTCCTTTTCGATGATTTTACACTAGTCGGAAATTTCTTTCTTTTTCCCTGGTTTAGGGGGTCGTGAAGCAATGAACTCCCTTTTCTTTTAATTTTTTCGACAAATCTTATTAACAACCGAAAAATAGACTTTGCTGGTTTCTAAGAGTGAAGTTTTAAAGTGTCCATTTGGGGACATCCGATGAAATTGGAACAATAAGAGTAAATGCTTAAGTAGATCATTATATACTGTGTTTGGTAGAGAGTGTTCACAACATGTTTTAGAATGTAGAATAAGTGCGACACTAAGTAACCCGTTGTTCATCTATTCGTTGTGGTTTGCAATAAATATTCATCGATTATCAGTGTAAAAAACTCCTGAATTTCCTCCCATGTATGTTCTAAAATCGTGTCTTACAATGCATAGAAGAAATTAATGTCAGCGATCCTTTTTGCAGTCGGTGAAATGGCAGCAGCATCAGCAACTACTCTCTCAGTTGGTTCCGCCACATCCTTTGGCTCCATAGTGAGCCCAAAATTACAATCAAAGGCCTTTATTGCGAAATGCAATACCAGGGACTACCTTAGGAGTTTCAGTGGCCTTAAGGCAGAGGCATTTGTACGATGTGAATCCGAGTCGTCATTTCTAGGAAATGAAAGCATTGCAGCTCTTCGACAATCCATTACTCCTAAAGCCCGAAACCAAAAGCAGAGATCTTCGAACCATGTTCAGCCTCAAGCATCTTATAAAGTGGCTGTTCTCGGAGCCTCTGGCGGTATAGGCCAGCCTCTAGCTCTTCTGATTAAGATGTCACCGCTAGTATCATCGTTGCACCTTTATGATATTGCAAATGTCAAAGGAGTCGCAGCAGATCTCAGCCATTGCAACACTCCCGCTCAGGTTTTTGACTTTACGGGAGCTTCTGAGTTGGCCAATTCTTTGAAAGGTATAGATGTAGTTGTCATACCAGCTGGCGTTCCGAGAAAGCCTGGTATGACACGGGACGACTTGTTCAACATAAATGCTAATATTGTGAAAAGCTTGGTTGAGGCTGTTGCT</genome_strand>
        <mrna_strand>GAATTTTATAATCTTATAGGTAGAAGTGAAGAAAAAATCAGTAAAAATTCTGAGAATTTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTGAAATGGCAGCAGCATCAGCAACTACTCTCTCAGTTGGTTCCGCCACATCCTTTGGCTCCATAGTGAGCCCAAAATTACAATCAAAGGCCTTTATTGCGAAATGCAATACCAGGGACTACCTTAGGAGTTTCAGTGGCCTTAAGGCAGAGGCATTTGTACGATGTGAATCCGAGTCGTCATTTCTAGGAAATGAAAGCATTGCAGCTCTTCGACAATCCATTACTCCTAAAGCCCGAAACCAAAAGCAGAGATCTTCGAACCATGTTCAGCCTCAAGCATCTTATAAAGTGGCTGTTCTCGGAGCCTCTGGCGGTATAGGCCAGCCTCTAGCTCTTCTGATTAAGATGTCACCGCTAGTATCATCGTTGCACCTTTATGATATTGCAAATGTCAAAGGAGTCGCAGCAGATCTCAGCCATTGCAACACTCCCGCTCAGGTTTTTGACTTTACGGGAGCTTCTGAGTTGGCCAATTCTTTGAAAGGTATAGATGTAGTTGTCATACCAGCTGGCGTTCCGAGAAAGCCTGGTATGACACGGGACGACTTGNNTCACATAAATGCTAATATTGTGAAAAGCTTGGGTGAGGCTGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326396" ref_strand="+" ref_description="SGN-E326396 [cTOC-14-K5]">
      <seq>aattttataatcttataggtagaagtgaagaaaaaatcagtaaaaattctgagaatttgagtcggtgaaatggcagcagcatcagcaactactctctcagttggttccgccacatcctttggctccatagtgagcccaaaattacaatcaaaggcctttattgcgaaatgcaataccagggactaccttaggagtttcagtggccttaaggcagaggcatttgtacgatgtgaatccgagtcgtcatttctaggaaatgaaagcattgcagctcttcgacaatccattactcctaaagcccgaaaccaaaagcagagatcttcgaaccatgttcagcctcaagcatcttataaagtggctgttctcggagcctctggcggtataggccagcctctagctcttctgattaagatgtcaccgctagtatcatcgttgcacctttatgatattgcaaatgtcaaaggagtcgcagcagatctcagccattgcaacactcccgctcaggtttttgactttacgggagcttctgagttggccaattctttgaaaggtatagatgtagttgtcataccagctggcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="55756" stop="52954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55456" g_stop="55396" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55395" i_stop="53774" i_length="1622">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53773" g_stop="53254" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="581" r_length="520" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E326396" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55456" e_stop="55396"/>
          <exon e_start="53773" e_stop="53254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTATAATCTTATAGGTAGAAGTGAAGAAAAAATCAGTAAAAATTCTGAGAATTTGAGGTAATTTTTTATTGTGATTATATATGATTTCCTGAACTTTTTTTTATTGATTTTTTGTTTATTTTCTTGTGCCATTTTGGTGTAATTTGTCAATTTTATGTAGAGTTTTGCTATATTTGATGTTCTTTGTCTGTGTTAGGCTAAAGGGGGTTCTTGAAAAATGAAAAGAAGAATAAAGTTTGAATCTTTTCATTTGATTATTCAATTGAAGGCTGTATTTACCACAAAGAAAGTTAATTTATTTAAGGGGTTAGCTTGATTTGTGATTTCTTCCAATGTGTTCAAGCTTTGGTGGATAGGGTTACTTGGTACCTATATTGGTGGGAGGTAGTAAGTAGCGGGGGAATTAATCGAGGTGCGTGCGAGCTGGTTCAGACACCACAAAGAAAGTTAATTTATTTAAGGCAATGTGTCTAAGCTTTGTTTGGTGGATACTGAATAGGGTTACCTGGTACCAATGATGGTGGGAGGTAGAAGGCACCTGTGGAACTAATCGAGGTGTGTGCAAGCTGGTCCAGACACCACAAAGAAAGTTAATTTATTTAAGGCAATGTGTCCAAGCTTTGTTTGGTGGATAGGGTTACCTTGTAAGGATGCTGGTAGTAGGGTACCCGAGGAATTAGTCGGTTGCATGCAAGTTGGCGTAGACATCACGATATTTAAAAAAGAAAGAGGATATCCCATTCCTAGCAGCCTTAACAGTTGACTGTGGCAGAATTCTCTCTCTGCTGTTGGTCCTTTTAGGATTTCTGCAGAACTGTTCAATTACACTTCGAGGTATCTCACGCGAAATGTTAGGACGTATGTGTCTAGTTGTTTCAACTTTATACAATCAGGTGCATACCCAAAGTTGGAAGGCATAGATGTTAGCTGATGCCAAGTTAAAGGGAAACGTTTATTTATTATGTCTAATATGAATGATACAGTGAATACTTACACTTTTCCTGTCATCAATCTTTCAAAATCGCTGATGCTGTATTTTTCCTGTCTTTTCTGCTGAGCTGAATAGTTGGCTTATATGTTTTACTGGTGTTCCGTGCATATGAGATGATTTAGTACAGTTGTTTGCGAATGTAAACATTTCAAAACGTGTCTTCTATAGCTTGATTTGGATAATAAATGTATGAACTTGGATGCATTGTTTGTTAAACAACTTATTTGACTATTTTTCTTTGTTAGGCTCAAACTCCTTTTCGATGATTTTACACTAGTCGGAAATTTCTTTCTTTTTCCCTGGTTTAGGGGGTCGTGAAGCAATGAACTCCCTTTTCTTTTAATTTTTTCGACAAATCTTATTAACAACCGAAAAATAGACTTTGCTGGTTTCTAAGAGTGAAGTTTTAAAGTGTCCATTTGGGGACATCCGATGAAATTGGAACAATAAGAGTAAATGCTTAAGTAGATCATTATATACTGTGTTTGGTAGAGAGTGTTCACAACATGTTTTAGAATGTAGAATAAGTGCGACACTAAGTAACCCGTTGTTCATCTATTCGTTGTGGTTTGCAATAAATATTCATCGATTATCAGTGTAAAAAACTCCTGAATTTCCTCCCATGTATGTTCTAAAATCGTGTCTTACAATGCATAGAAGAAATTAATGTCAGCGATCCTTTTTGCAGTCGGTGAAATGGCAGCAGCATCAGCAACTACTCTCTCAGTTGGTTCCGCCACATCCTTTGGCTCCATAGTGAGCCCAAAATTACAATCAAAGGCCTTTATTGCGAAATGCAATACCAGGGACTACCTTAGGAGTTTCAGTGGCCTTAAGGCAGAGGCATTTGTACGATGTGAATCCGAGTCGTCATTTCTAGGAAATGAAAGCATTGCAGCTCTTCGACAATCCATTACTCCTAAAGCCCGAAACCAAAAGCAGAGATCTTCGAACCATGTTCAGCCTCAAGCATCTTATAAAGTGGCTGTTCTCGGAGCCTCTGGCGGTATAGGCCAGCCTCTAGCTCTTCTGATTAAGATGTCACCGCTAGTATCATCGTTGCACCTTTATGATATTGCAAATGTCAAAGGAGTCGCAGCAGATCTCAGCCATTGCAACACTCCCGCTCAGGTTTTTGACTTTACGGGAGCTTCTGAGTTGGCCAATTCTTTGAAAGGTATAGATGTAGTTGTCATACCAGCTGGCGT</genome_strand>
        <mrna_strand>AATTTTATAATCTTATAGGTAGAAGTGAAGAAAAAATCAGTAAAAATTCTGAGAATTTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTGAAATGGCAGCAGCATCAGCAACTACTCTCTCAGTTGGTTCCGCCACATCCTTTGGCTCCATAGTGAGCCCAAAATTACAATCAAAGGCCTTTATTGCGAAATGCAATACCAGGGACTACCTTAGGAGTTTCAGTGGCCTTAAGGCAGAGGCATTTGTACGATGTGAATCCGAGTCGTCATTTCTAGGAAATGAAAGCATTGCAGCTCTTCGACAATCCATTACTCCTAAAGCCCGAAACCAAAAGCAGAGATCTTCGAACCATGTTCAGCCTCAAGCATCTTATAAAGTGGCTGTTCTCGGAGCCTCTGGCGGTATAGGCCAGCCTCTAGCTCTTCTGATTAAGATGTCACCGCTAGTATCATCGTTGCACCTTTATGATATTGCAAATGTCAAAGGAGTCGCAGCAGATCTCAGCCATTGCAACACTCCCGCTCAGGTTTTTGACTTTACGGGAGCTTCTGAGTTGGCCAATTCTTTGAAAGGTATAGATGTAGTTGTCATACCAGCTGGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325437" ref_strand="+" ref_description="SGN-E325437 [cTOC-1-F19]">
      <seq>aattttataatcttataggtagaagtgaagaaaaaatcagtaaaaattctgagaatttgagtcggtgaaatggcagcagcatcagcaactactctctcagttggttccgccacatcctttggctccatagtgagcccaaaattacaatcaaaggcctttattgcgaaatgcaataccagggactaccttaggagtttcagtggccttaaggcagaggcatttgtacgatgtgaatccgagtcgtcatttctaggaaatgaaagcattgcagctcttcgacaatccattactcctaaagcccgaaaccaaaagcagagatcttcgaaccatgttcagcctcaagcatcttataaagtggctgttctcggagcctctggcggtataggccagcctctagctcttctgattaagatgtcaccgctagtatcatcgttgcacctttatgatattgcaaatgtcaaaggagtcgcagcagatctcagccattgcaacactcccgctcaggtttttgactttacgggagcttctgagttggccaattctttgaaaggtatagatgtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="55756" stop="52973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55456" g_stop="55396" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55395" i_stop="53774" i_length="1622">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53773" g_stop="53273" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="562" r_length="501" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E325437" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55456" e_stop="55396"/>
          <exon e_start="53773" e_stop="53273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTATAATCTTATAGGTAGAAGTGAAGAAAAAATCAGTAAAAATTCTGAGAATTTGAGGTAATTTTTTATTGTGATTATATATGATTTCCTGAACTTTTTTTTATTGATTTTTTGTTTATTTTCTTGTGCCATTTTGGTGTAATTTGTCAATTTTATGTAGAGTTTTGCTATATTTGATGTTCTTTGTCTGTGTTAGGCTAAAGGGGGTTCTTGAAAAATGAAAAGAAGAATAAAGTTTGAATCTTTTCATTTGATTATTCAATTGAAGGCTGTATTTACCACAAAGAAAGTTAATTTATTTAAGGGGTTAGCTTGATTTGTGATTTCTTCCAATGTGTTCAAGCTTTGGTGGATAGGGTTACTTGGTACCTATATTGGTGGGAGGTAGTAAGTAGCGGGGGAATTAATCGAGGTGCGTGCGAGCTGGTTCAGACACCACAAAGAAAGTTAATTTATTTAAGGCAATGTGTCTAAGCTTTGTTTGGTGGATACTGAATAGGGTTACCTGGTACCAATGATGGTGGGAGGTAGAAGGCACCTGTGGAACTAATCGAGGTGTGTGCAAGCTGGTCCAGACACCACAAAGAAAGTTAATTTATTTAAGGCAATGTGTCCAAGCTTTGTTTGGTGGATAGGGTTACCTTGTAAGGATGCTGGTAGTAGGGTACCCGAGGAATTAGTCGGTTGCATGCAAGTTGGCGTAGACATCACGATATTTAAAAAAGAAAGAGGATATCCCATTCCTAGCAGCCTTAACAGTTGACTGTGGCAGAATTCTCTCTCTGCTGTTGGTCCTTTTAGGATTTCTGCAGAACTGTTCAATTACACTTCGAGGTATCTCACGCGAAATGTTAGGACGTATGTGTCTAGTTGTTTCAACTTTATACAATCAGGTGCATACCCAAAGTTGGAAGGCATAGATGTTAGCTGATGCCAAGTTAAAGGGAAACGTTTATTTATTATGTCTAATATGAATGATACAGTGAATACTTACACTTTTCCTGTCATCAATCTTTCAAAATCGCTGATGCTGTATTTTTCCTGTCTTTTCTGCTGAGCTGAATAGTTGGCTTATATGTTTTACTGGTGTTCCGTGCATATGAGATGATTTAGTACAGTTGTTTGCGAATGTAAACATTTCAAAACGTGTCTTCTATAGCTTGATTTGGATAATAAATGTATGAACTTGGATGCATTGTTTGTTAAACAACTTATTTGACTATTTTTCTTTGTTAGGCTCAAACTCCTTTTCGATGATTTTACACTAGTCGGAAATTTCTTTCTTTTTCCCTGGTTTAGGGGGTCGTGAAGCAATGAACTCCCTTTTCTTTTAATTTTTTCGACAAATCTTATTAACAACCGAAAAATAGACTTTGCTGGTTTCTAAGAGTGAAGTTTTAAAGTGTCCATTTGGGGACATCCGATGAAATTGGAACAATAAGAGTAAATGCTTAAGTAGATCATTATATACTGTGTTTGGTAGAGAGTGTTCACAACATGTTTTAGAATGTAGAATAAGTGCGACACTAAGTAACCCGTTGTTCATCTATTCGTTGTGGTTTGCAATAAATATTCATCGATTATCAGTGTAAAAAACTCCTGAATTTCCTCCCATGTATGTTCTAAAATCGTGTCTTACAATGCATAGAAGAAATTAATGTCAGCGATCCTTTTTGCAGTCGGTGAAATGGCAGCAGCATCAGCAACTACTCTCTCAGTTGGTTCCGCCACATCCTTTGGCTCCATAGTGAGCCCAAAATTACAATCAAAGGCCTTTATTGCGAAATGCAATACCAGGGACTACCTTAGGAGTTTCAGTGGCCTTAAGGCAGAGGCATTTGTACGATGTGAATCCGAGTCGTCATTTCTAGGAAATGAAAGCATTGCAGCTCTTCGACAATCCATTACTCCTAAAGCCCGAAACCAAAAGCAGAGATCTTCGAACCATGTTCAGCCTCAAGCATCTTATAAAGTGGCTGTTCTCGGAGCCTCTGGCGGTATAGGCCAGCCTCTAGCTCTTCTGATTAAGATGTCACCGCTAGTATCATCGTTGCACCTTTATGATATTGCAAATGTCAAAGGAGTCGCAGCAGATCTCAGCCATTGCAACACTCCCGCTCAGGTTTTTGACTTTACGGGAGCTTCTGAGTTGGCCAATTCTTTGAAAGGTATAGATGTAG</genome_strand>
        <mrna_strand>AATTTTATAATCTTATAGGTAGAAGTGAAGAAAAAATCAGTAAAAATTCTGAGAATTTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTGAAATGGCAGCAGCATCAGCAACTACTCTCTCAGTTGGTTCCGCCACATCCTTTGGCTCCATAGTGAGCCCAAAATTACAATCAAAGGCCTTTATTGCGAAATGCAATACCAGGGACTACCTTAGGAGTTTCAGTGGCCTTAAGGCAGAGGCATTTGTACGATGTGAATCCGAGTCGTCATTTCTAGGAAATGAAAGCATTGCAGCTCTTCGACAATCCATTACTCCTAAAGCCCGAAACCAAAAGCAGAGATCTTCGAACCATGTTCAGCCTCAAGCATCTTATAAAGTGGCTGTTCTCGGAGCCTCTGGCGGTATAGGCCAGCCTCTAGCTCTTCTGATTAAGATGTCACCGCTAGTATCATCGTTGCACCTTTATGATATTGCAAATGTCAAAGGAGTCGCAGCAGATCTCAGCCATTGCAACACTCCCGCTCAGGTTTTTGACTTTACGGGAGCTTCTGAGTTGGCCAATTCTTTGAAAGGTATAGATGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550918" ref_strand="+" ref_description="SGN-E550918 [TUS-54-F23]">
      <seq>aaaatcagtaaaaattctgagaatttgagtcggtgaaatggcagcagcatcagcaactactctctcagttggttccgccacatcctttggctccatagtgagcccaaaattacaatcaaaggcctttattgcgaaatgcaataccagggactaccttaggagtttcagtggccttaaggcagaggcatttgtacgatgtgaatccgagtcgtcatttctaggaaatgaaagcattgcaactcttcgacaatccattactcctaaagcccgaaaccaaaagcagagatcttcgaaccatgttcagcctcaagcatcttataaagtggctgttctcggagcctctggcggtataggccagcctctagctcttctgattaagatgtcaccgctagaatcatcgttgcacctttatgatattgcaaatgtcanaggagtcgcagcagatctcagccattggcacactcccgctcaggtttttgactttacgggagcttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="55724" stop="53006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55424" g_stop="55396" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55395" i_stop="53774" i_length="1622">
            <donor d_prob="0.942" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53773" g_stop="53306" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="497" r_length="468" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E550918" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55424" e_stop="55396"/>
          <exon e_start="53773" e_stop="53306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCAGTAAAAATTCTGAGAATTTGAGGTAATTTTTTATTGTGATTATATATGATTTCCTGAACTTTTTTTTATTGATTTTTTGTTTATTTTCTTGTGCCATTTTGGTGTAATTTGTCAATTTTATGTAGAGTTTTGCTATATTTGATGTTCTTTGTCTGTGTTAGGCTAAAGGGGGTTCTTGAAAAATGAAAAGAAGAATAAAGTTTGAATCTTTTCATTTGATTATTCAATTGAAGGCTGTATTTACCACAAAGAAAGTTAATTTATTTAAGGGGTTAGCTTGATTTGTGATTTCTTCCAATGTGTTCAAGCTTTGGTGGATAGGGTTACTTGGTACCTATATTGGTGGGAGGTAGTAAGTAGCGGGGGAATTAATCGAGGTGCGTGCGAGCTGGTTCAGACACCACAAAGAAAGTTAATTTATTTAAGGCAATGTGTCTAAGCTTTGTTTGGTGGATACTGAATAGGGTTACCTGGTACCAATGATGGTGGGAGGTAGAAGGCACCTGTGGAACTAATCGAGGTGTGTGCAAGCTGGTCCAGACACCACAAAGAAAGTTAATTTATTTAAGGCAATGTGTCCAAGCTTTGTTTGGTGGATAGGGTTACCTTGTAAGGATGCTGGTAGTAGGGTACCCGAGGAATTAGTCGGTTGCATGCAAGTTGGCGTAGACATCACGATATTTAAAAAAGAAAGAGGATATCCCATTCCTAGCAGCCTTAACAGTTGACTGTGGCAGAATTCTCTCTCTGCTGTTGGTCCTTTTAGGATTTCTGCAGAACTGTTCAATTACACTTCGAGGTATCTCACGCGAAATGTTAGGACGTATGTGTCTAGTTGTTTCAACTTTATACAATCAGGTGCATACCCAAAGTTGGAAGGCATAGATGTTAGCTGATGCCAAGTTAAAGGGAAACGTTTATTTATTATGTCTAATATGAATGATACAGTGAATACTTACACTTTTCCTGTCATCAATCTTTCAAAATCGCTGATGCTGTATTTTTCCTGTCTTTTCTGCTGAGCTGAATAGTTGGCTTATATGTTTTACTGGTGTTCCGTGCATATGAGATGATTTAGTACAGTTGTTTGCGAATGTAAACATTTCAAAACGTGTCTTCTATAGCTTGATTTGGATAATAAATGTATGAACTTGGATGCATTGTTTGTTAAACAACTTATTTGACTATTTTTCTTTGTTAGGCTCAAACTCCTTTTCGATGATTTTACACTAGTCGGAAATTTCTTTCTTTTTCCCTGGTTTAGGGGGTCGTGAAGCAATGAACTCCCTTTTCTTTTAATTTTTTCGACAAATCTTATTAACAACCGAAAAATAGACTTTGCTGGTTTCTAAGAGTGAAGTTTTAAAGTGTCCATTTGGGGACATCCGATGAAATTGGAACAATAAGAGTAAATGCTTAAGTAGATCATTATATACTGTGTTTGGTAGAGAGTGTTCACAACATGTTTTAGAATGTAGAATAAGTGCGACACTAAGTAACCCGTTGTTCATCTATTCGTTGTGGTTTGCAATAAATATTCATCGATTATCAGTGTAAAAAACTCCTGAATTTCCTCCCATGTATGTTCTAAAATCGTGTCTTACAATGCATAGAAGAAATTAATGTCAGCGATCCTTTTTGCAGTCGGTGAAATGGCAGCAGCATCAGCAACTACTCTCTCAGTTGGTTCCGCCACATCCTTTGGCTCCATAGTGAGCCCAAAATTACAATCAAAGGCCTTTATTGCGAAATGCAATACCAGGGACTACCTTAGGAGTTTCAGTGGCCTTAAGGCAGAGGCATTTGTACGATGTGAATCCGAGTCGTCATTTCTAGGAAATGAAAGCATTGCAGCTCTTCGACAATCCATTACTCCTAAAGCCCGAAACCAAAAGCAGAGATCTTCGAACCATGTTCAGCCTCAAGCATCTTATAAAGTGGCTGTTCTCGGAGCCTCTGGCGGTATAGGCCAGCCTCTAGCTCTTCTGATTAAGATGTCACCGCTAGTATCATCGTTGCACCTTTATGATATTGCAAATGTCAAAGGAGTCGCAGCAGATCTCAGCCATTGCAACACTCCCGCTCAGGTTTTTGACTTTACGGGAGCTTCTG</genome_strand>
        <mrna_strand>AAAATCAGTAAAAATTCTGAGAATTTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTGAAATGGCAGCAGCATCAGCAACTACTCTCTCAGTTGGTTCCGCCACATCCTTTGGCTCCATAGTGAGCCCAAAATTACAATCAAAGGCCTTTATTGCGAAATGCAATACCAGGGACTACCTTAGGAGTTTCAGTGGCCTTAAGGCAGAGGCATTTGTACGATGTGAATCCGAGTCGTCATTTCTAGGAAATGAAAGCATTGCAACTCTTCGACAATCCATTACTCCTAAAGCCCGAAACCAAAAGCAGAGATCTTCGAACCATGTTCAGCCTCAAGCATCTTATAAAGTGGCTGTTCTCGGAGCCTCTGGCGGTATAGGCCAGCCTCTAGCTCTTCTGATTAAGATGTCACCGCTAGAATCATCGTTGCACCTTTATGATATTGCAAATGTCANAGGAGTCGCAGCAGATCTCAGCCATTGGCACACTCCCGCTCAGGTTTTTGACTTTACGGGAGCTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688667" ref_strand="+" ref_description="SGN-E688667 [t3_tus_54_F23]">
      <seq>aaaatcagtaaaaattctgagaatttgagtcggtgaaatggcagcagcatcagcaactactctctcagttggttccgccacatcctttggctccatagtgagcccaaaattacaatcaaaggcctttattgcgaaatgcaataccagggactaccttaggagtttcagtggccttaaggcagaggcatttgtacgatgtgaatccgagtcgtcatttctaggaaatgaaagcattgcaactcttcgacaatccattactcctaaagcccgaaaccaaaagcagagatcttcgaaccatgttcagcctcaagcatcttataaagtggctgttctcggagcctctggcggtataggccagcctctagctcttctgattaagatgtcaccgctagaatcatcgttgcacctttatgatattgcaaatgtcanaggagtcgcagcagatctcagccattggcacactcccgctcaggtttttgactttacgggagcttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="55724" stop="53006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55424" g_stop="55396" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55395" i_stop="53774" i_length="1622">
            <donor d_prob="0.942" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53773" g_stop="53306" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="497" r_length="468" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E688667" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55424" e_stop="55396"/>
          <exon e_start="53773" e_stop="53306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCAGTAAAAATTCTGAGAATTTGAGGTAATTTTTTATTGTGATTATATATGATTTCCTGAACTTTTTTTTATTGATTTTTTGTTTATTTTCTTGTGCCATTTTGGTGTAATTTGTCAATTTTATGTAGAGTTTTGCTATATTTGATGTTCTTTGTCTGTGTTAGGCTAAAGGGGGTTCTTGAAAAATGAAAAGAAGAATAAAGTTTGAATCTTTTCATTTGATTATTCAATTGAAGGCTGTATTTACCACAAAGAAAGTTAATTTATTTAAGGGGTTAGCTTGATTTGTGATTTCTTCCAATGTGTTCAAGCTTTGGTGGATAGGGTTACTTGGTACCTATATTGGTGGGAGGTAGTAAGTAGCGGGGGAATTAATCGAGGTGCGTGCGAGCTGGTTCAGACACCACAAAGAAAGTTAATTTATTTAAGGCAATGTGTCTAAGCTTTGTTTGGTGGATACTGAATAGGGTTACCTGGTACCAATGATGGTGGGAGGTAGAAGGCACCTGTGGAACTAATCGAGGTGTGTGCAAGCTGGTCCAGACACCACAAAGAAAGTTAATTTATTTAAGGCAATGTGTCCAAGCTTTGTTTGGTGGATAGGGTTACCTTGTAAGGATGCTGGTAGTAGGGTACCCGAGGAATTAGTCGGTTGCATGCAAGTTGGCGTAGACATCACGATATTTAAAAAAGAAAGAGGATATCCCATTCCTAGCAGCCTTAACAGTTGACTGTGGCAGAATTCTCTCTCTGCTGTTGGTCCTTTTAGGATTTCTGCAGAACTGTTCAATTACACTTCGAGGTATCTCACGCGAAATGTTAGGACGTATGTGTCTAGTTGTTTCAACTTTATACAATCAGGTGCATACCCAAAGTTGGAAGGCATAGATGTTAGCTGATGCCAAGTTAAAGGGAAACGTTTATTTATTATGTCTAATATGAATGATACAGTGAATACTTACACTTTTCCTGTCATCAATCTTTCAAAATCGCTGATGCTGTATTTTTCCTGTCTTTTCTGCTGAGCTGAATAGTTGGCTTATATGTTTTACTGGTGTTCCGTGCATATGAGATGATTTAGTACAGTTGTTTGCGAATGTAAACATTTCAAAACGTGTCTTCTATAGCTTGATTTGGATAATAAATGTATGAACTTGGATGCATTGTTTGTTAAACAACTTATTTGACTATTTTTCTTTGTTAGGCTCAAACTCCTTTTCGATGATTTTACACTAGTCGGAAATTTCTTTCTTTTTCCCTGGTTTAGGGGGTCGTGAAGCAATGAACTCCCTTTTCTTTTAATTTTTTCGACAAATCTTATTAACAACCGAAAAATAGACTTTGCTGGTTTCTAAGAGTGAAGTTTTAAAGTGTCCATTTGGGGACATCCGATGAAATTGGAACAATAAGAGTAAATGCTTAAGTAGATCATTATATACTGTGTTTGGTAGAGAGTGTTCACAACATGTTTTAGAATGTAGAATAAGTGCGACACTAAGTAACCCGTTGTTCATCTATTCGTTGTGGTTTGCAATAAATATTCATCGATTATCAGTGTAAAAAACTCCTGAATTTCCTCCCATGTATGTTCTAAAATCGTGTCTTACAATGCATAGAAGAAATTAATGTCAGCGATCCTTTTTGCAGTCGGTGAAATGGCAGCAGCATCAGCAACTACTCTCTCAGTTGGTTCCGCCACATCCTTTGGCTCCATAGTGAGCCCAAAATTACAATCAAAGGCCTTTATTGCGAAATGCAATACCAGGGACTACCTTAGGAGTTTCAGTGGCCTTAAGGCAGAGGCATTTGTACGATGTGAATCCGAGTCGTCATTTCTAGGAAATGAAAGCATTGCAGCTCTTCGACAATCCATTACTCCTAAAGCCCGAAACCAAAAGCAGAGATCTTCGAACCATGTTCAGCCTCAAGCATCTTATAAAGTGGCTGTTCTCGGAGCCTCTGGCGGTATAGGCCAGCCTCTAGCTCTTCTGATTAAGATGTCACCGCTAGTATCATCGTTGCACCTTTATGATATTGCAAATGTCAAAGGAGTCGCAGCAGATCTCAGCCATTGCAACACTCCCGCTCAGGTTTTTGACTTTACGGGAGCTTCTG</genome_strand>
        <mrna_strand>AAAATCAGTAAAAATTCTGAGAATTTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTGAAATGGCAGCAGCATCAGCAACTACTCTCTCAGTTGGTTCCGCCACATCCTTTGGCTCCATAGTGAGCCCAAAATTACAATCAAAGGCCTTTATTGCGAAATGCAATACCAGGGACTACCTTAGGAGTTTCAGTGGCCTTAAGGCAGAGGCATTTGTACGATGTGAATCCGAGTCGTCATTTCTAGGAAATGAAAGCATTGCAACTCTTCGACAATCCATTACTCCTAAAGCCCGAAACCAAAAGCAGAGATCTTCGAACCATGTTCAGCCTCAAGCATCTTATAAAGTGGCTGTTCTCGGAGCCTCTGGCGGTATAGGCCAGCCTCTAGCTCTTCTGATTAAGATGTCACCGCTAGAATCATCGTTGCACCTTTATGATATTGCAAATGTCANAGGAGTCGCAGCAGATCTCAGCCATTGGCACACTCCCGCTCAGGTTTTTGACTTTACGGGAGCTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E607633" ref_strand="+" ref_description="SGN-E607633 [23602]">
      <seq>aaaagacaaagtggttgaagtgttgaagtacaacgtaaggtttcttcaaggtgaggtgaatgaaataatgtgtatgagggaacatgagagtcaagttaatgcacaagagatgatcatatttgcattgaaagaaggagaatggaagaaggaaaagaagaagctaaaagaggaagtgaagaagttgaagaaaaaattggaagaaaaagaagaagaagaagagaagtgtaaaggaatagagaatttgagtgttaaagaagataaagagtggcatcaattagcaacaagttatttgttagagcaaattaggaatgaagaagctagaagagatgaagcaattgagaaatggaaacaactttattttgctatcaagattgagcttgatgaacttattcataggacaaatcaaggaagaggactatgttggaaaacagaacaaatggaattattagaggagatgcatagagagttgaaagaaaaagaggaaaatattgcacttctaaaagaggaaatagcttcaaaggaacaacaagaactcaagagagaaagggaagttgacattttaaggcaaagtttgaaaatcatgagctataatatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="+" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="58347" stop="59641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58647" g_stop="59050" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59051" i_stop="59152" i_length="102">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59153" g_stop="59341" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="596" r_length="189" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="+" ref_id="SGN-E607633" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E607633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58647" e_stop="59050"/>
          <exon e_start="59153" e_stop="59341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGACAAAGTGGTTGAAGTGTTGAAATACAATGTAAGGTTTCTTCAAGGTGAGGTGAATGAAATTATGTGTATGAGGGAATATGAGAGTCAAGTCAATGCACAAGAGATGATCATATTTGCATTGAAAGAAGCAGAATGGAAGAAGGAAAAGAAGAAGCTAAAAGAGGAAGTGAAGAAGTTGAAGAAAAACTTGGAAG--AAA-AAGATGAAGAAGACAAGTGTAAAGCTATAGAGAATTTGTGTGTAAAAGAAGATAAAGAGTGGCATGAATTAGCAACAAGTTATTTGTTGGAGCAAATTAGGAATGAAGAAGCTAGAAGAGATGAAGCAATAGAGAAGTGGAAACAACTTTATTTTGCTATCAAGATTGAGCTTGATGAACTTATTCATAGGACAAATCAAGGTACGTTTGAATTTCATCAGATTAGTCACTCAACGAACAGTTGTTATGTCTACAAGTCGTCTTGTTTTGTCCTTCTAATGTGTTTTGATCTTGTTTGACTAGGAAGAGGACTATGTTGGAAAATAGAACAAATGGAATTATTAGAGGAGATGCATAAAGAGTTGAAAGAAAAAGAGGAAAAAATTGCACTTCTAAAAGAGGAAATAGCTTCAAAGGAACAACAAGAGCTCAAGAGGGAAAGGGAAGTTGACATTTTAAGGCAAAGTTTGAAAATCATGAGCTATAATATGA</genome_strand>
        <mrna_strand>AAAAGACAAAGTGGTTGAAGTGTTGAAGTACAACGTAAGGTTTCTTCAAGGTGAGGTGAATGAAATAATGTGTATGAGGGAACATGAGAGTCAAGTTAATGCACAAGAGATGATCATATTTGCATTGAAAGAAGGAGAATGGAAGAAGGAAAAGAAGAAGCTAAAAGAGGAAGTGAAGAAGTTGAAGAAAAAATTGGAAGAAAAAGAAGAAGAAGAAGAGAAGTGTAAAGGAATAGAGAATTTGAGTGTTAAAGAAGATAAAGAGTGGCATCAATTAGCAACAAGTTATTTGTTAGAGCAAATTAGGAATGAAGAAGCTAGAAGAGATGAAGCAATTGAGAAATGGAAACAACTTTATTTTGCTATCAAGATTGAGCTTGATGAACTTATTCATAGGACAAATCAAG......................................................................................................GAAGAGGACTATGTTGGAAAACAGAACAAATGGAATTATTAGAGGAGATGCATAGAGAGTTGAAAGAAAAAGAGGAAAATATTGCACTTCTAAAAGAGGAAATAGCTTCAAAGGAACAACAAGAACTCAAGAGAGAAAGGGAAGTTGACATTTTAAGGCAAAGTTTGAAAATCATGAGCTATAATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256030" ref_strand="+" ref_description="SGN-E256030 [cLEG-35-N1]">
      <seq>tttgatgttctctctcggtctctcctatggaggtggcttgtcataaatgaagtgtgaaactcttgaacatgctattgaatatgcattggtgcgttgtctaacatgtcagaccaacttttagcaagtttgagccataatcagatgccttatcacattgtttgccgatagttcatgggaatttcttgcctgttcttctattgtgacgtggtgaacggctgtaactaaatcactttcgcctgctttggaatcatactgagagcttaattttgttaaattctgagtgactctatataattaagttgcttcttatattgtagaaagttaaggacagctggagggttgtaaatcacagagatataataccaacagttcctcgcttgatgggctactgccatgttgctcaacctgtttatttggcagctggagatccgcaaaacacaatggataatgtggaactcttggaagatggttaccaaggtgatgttatcggagaggccacacctgatgttattgtcagtgaatttatgaaaggtgaaaaagaacttattgagaaaatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="61956" stop="59932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61656" g_stop="61214" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61213" i_stop="60799" i_length="415">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60798" g_stop="60718" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="524" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60717" i_stop="60267" i_length="451">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60266" g_stop="60232" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="559" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E256030" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61656" e_stop="61214"/>
          <exon e_start="60798" e_stop="60718"/>
          <exon e_start="60266" e_stop="60232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATGTTCTCTCTCGGTCTCTCCTATGGAGGTGGCTTGTCATAAATGAAGTGTGAAACTCTTGAACATGCTATTGAATATGCATTGGTGCGTTGTCTAACATGTCAGACCAACTTTTAGCAAGTTTGAGCCATAATCAGATGCCTTATCACATTGTTTGCCGATAGTTCATGGGAATTTCTTGCCTGTTCTTCTATTGTGACGTGGTGAACGGCTGTAACTAAATCACTTTCGCCTGCTTTGGAATCATACTGAGAGCTTAATTTTGTTAAATTCTGAGTGACTCTATATAATTAAGTTGCTTCTTATATTGTAGAAAGTTAAGGACAGCTGGAGGGTTGTAAATCACAGAGATATAATACCAACAGTTCCTCGCTTGATGGGCTACTGCCATGTTGCTCAACCTGTTTATTTGGCAGCTGGAGATCCGCAAAACACAATGGTGAGTAGATTTCATTTTCTCACTTTTTACACTATAAAACGTTGGATTGGCAGAATGTTGGCACTGTTAAGGAAGTTGTGTTTTCCCGTTAGAGATTAAAGTGGAAAAATGTGTCGGATGGTTAGCTTAACCTGAAGGAAATCACAGAAGGTTCAAAACAATTGACCTTTGTTATTTCTTCTATAAAACTATTAACTCAATTGCTCGAAGTAACTTTTTGATATTTTCTTCATAGTGTAGGTAGAAAGTATCAAGAAGTACTATGTCATTCTTACTTATTATGTATGGGAACCTACTATCGTTACCTCCCTGGAAAAAGTCGGAAAGAAAATATGATCATTTTTTACATCATTCCTTTTATACGTGAAAGGAGCTTGTTGTTTAACTATATATGTCTCGGCACATCACATTTCAGGATAATGTGGAACTCTTGGAAGATGGTTACCAAGGTGATGTTATCGGAGAGGCCACACCTGATGTTATTGTCAGTGAATTTGTATGTTTCTCCACCTTTGTTCTCCTGTATCTTTAGTTCCTTCGTTTTGGTTCTGTGCTCCATTTCATCCATTCGTGATTTGTTCTATTAAGATCTTCAACTGTTAAAATTGTACTGCTACTTACCGTACATTTGACCAATTGAGACTTCTGTTTATTCATTTTGTTCAATACTTCGCCTAATGGAGAGTCTCCTTGAGGCATAAGCTTATCAATTCACTCCATTAGGTTGAAGCCATGTTGCTCGGAGTTTTGTGTTGGATCCTTCAAAAGCTATGCATTGTTAGGGGATCCGAGACAGGTTTGGCAACATTTTTGGGAGGTCCGAGCAAGAATTGCGGGAGGGGAGCTTGTTCTGAGTTATTTTTGCTATATGGAACACATTTCCTTTTTATTTAAAGGTAAAGAACTCTTGATAATCTCGCGATTACTTATCGTAACGTTTTGTGCAGATGAAAGGTGAAAAAGAACTTATTGAGAAAATACT</genome_strand>
        <mrna_strand>TTTGATGTTCTCTCTCGGTCTCTCCTATGGAGGTGGCTTGTCATAAATGAAGTGTGAAACTCTTGAACATGCTATTGAATATGCATTGGTGCGTTGTCTAACATGTCAGACCAACTTTTAGCAAGTTTGAGCCATAATCAGATGCCTTATCACATTGTTTGCCGATAGTTCATGGGAATTTCTTGCCTGTTCTTCTATTGTGACGTGGTGAACGGCTGTAACTAAATCACTTTCGCCTGCTTTGGAATCATACTGAGAGCTTAATTTTGTTAAATTCTGAGTGACTCTATATAATTAAGTTGCTTCTTATATTGTAGAAAGTTAAGGACAGCTGGAGGGTTGTAAATCACAGAGATATAATACCAACAGTTCCTCGCTTGATGGGCTACTGCCATGTTGCTCAACCTGTTTATTTGGCAGCTGGAGATCCGCAAAACACAATG...............................................................................................................................................................................................................................................................................................................................................................................................................................GATAATGTGGAACTCTTGGAAGATGGTTACCAAGGTGATGTTATCGGAGAGGCCACACCTGATGTTATTGTCAGTGAATTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAAGGTGAAAAAGAACTTATTGAGAAAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255683" ref_strand="+" ref_description="SGN-E255683 [cLEG-36-P16]">
      <seq>aagattcttcaactggactggaaaatgacatccttttatatcccatgaataaagatggaatagtgttggatgagaagaaagctgaggagatgaagtctcttttctcaacagcggagactgccatggaagcttgggcactgctagctacttcattgggacatccgacattcatcaaatctgaatttgacaaattatgcttcttagataatgagtcaactgacacagaggtagcgctctggcgtgattcagcaaggaaacggttagttgttgctttcaggggaacagaacaaacaaaatggaaggatcttgtgacggacttgatgctagttcctgcagggttgaatcctgaaaggataggcggggacttcaaggaagaagttcaggttcacagtggtttcctaagtgcatatgattcagttaggattaggctcatctcgcttatcaaaaaagcaattggctaccaggatgatgatcttgacacgccaaacaaatggcatgtttacgtgactggccatagtcttggtggtgcattggctactcttctcgctcttgaactatcatcaagtcaactagctaagcgtggagctatacgtgtgaccatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="65018" stop="61682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64718" g_stop="64492" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64491" i_stop="64379" i_length="113">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64378" g_stop="64316" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="290" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64315" i_stop="64237" i_length="79">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64236" g_stop="64190" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="337" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64189" i_stop="63476" i_length="714">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.896" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63475" g_stop="63430" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="383" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63429" i_stop="63322" i_length="108">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.608" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63321" g_stop="63242" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="463" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="63241" i_stop="62872" i_length="370">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62871" g_stop="62758" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="577" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="62757" i_stop="62009" i_length="749">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62008" g_stop="61982" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="604" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E255683" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64718" e_stop="64492"/>
          <exon e_start="64378" e_stop="64316"/>
          <exon e_start="64236" e_stop="64190"/>
          <exon e_start="63475" e_stop="63430"/>
          <exon e_start="63321" e_stop="63242"/>
          <exon e_start="62871" e_stop="62758"/>
          <exon e_start="62008" e_stop="61982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATTCTTCAACTGGACTGGAAAATGACATCCTTTTATATCCCATGAATAAAGATGGAATAGTGTTGGATGAGAAGAAAGCTGAGGAGATGAAGTCTCTTTTCTCAACAGCGGAGACTGCCATGGAAGCTTGGGCACTGCTAGCTACTTCATTGGGACATCCGACATTCATCAAATCTGAATTTGACAAATTATGCTTCTTAGATAATGAGTCAACTGACACAGAGGCAAGTTCATATGTTGCTGGCTATGAGTTCTTAGTTTCTAATGTATCTTAGATCTGATTCATTTGATCCAAGGAAAGCTATTCTACTGATTTTGGATTCTGTAAGACTTGCAGGTAGCGCTCTGGCGTGATTCAGCAAGGAAACGGTTAGTTGTTGCTTTCAGGGGAACAGAACAAGTAGGTTCCGGTGTTAAACACATCTTTAAAACTTGTTGATTTAGCTTAGTTGTGGATAACCGGTTTTTCTTTTATCCAGACAAAATGGAAGGATCTTGTGACGGACTTGATGCTAGTTCCTGCAGGGTAAAATCACAAATCTGTACAAGCACAGGCTGGCTTTAGTTTTTCTTTCTTTCTCTACTTTGCCCTTCTGGTTTCTCTGTACTACTAAGATGTTTTTCCTATCACAGTAAACAGATTCTCCTTCCGTTCAATTTGTTTGTCTTACTTTCCTTTTTAATCCGTTTCGAAGAGAATGTCTCTTCCTTTTCTGAAAACTCTTTCATTCTAACTTTCCACATGACATGTTTAAGACCACAAGATTACAGTCATTTTGGTACATTCTACATATCATAATTTAAGACCACAGTATTCAAAAGTCTTCTTTACTTTCTTAAACTCTGTGCCAAGTCAAAACCAGTCAAACAAATCGAAACGGAGGGTGTAATTTTTTCTTCTCTAAGTCTCTGAAAGTGTACTTTTATTGAAATACAACTCTTTACTATGCTGAAAGAAACATTTCCTTTTTCTTAGAGGAATAGGAGTAGAAGATAACCTTCCATCCTACATTATTAAGTTTAGACTGCAAATACCATCATATCTAAAGGTTTTCCTGAAAAAAGTTTTAACTTCGAACATAATTTGAAACAACAAGAAATAGCCAAACACTTTGGTAATTTTGAATATGAATTGTACGTTCTTGCATCTTCATTATTCGGATGTTGTACAGAAACTTTAGATGGTTAAGCAACCACTGTCCATTTTATTTCGCATCCTGAGTTGTCTCCTACTCTGCAGGTTGAATCCTGAAAGGATAGGCGGGGACTTCAAGGAAGAAGTTCAGGTGGCACTGAAATTCTTACTTTTCTATCTCTTAGTGCCTGAAATATGAATGTATTCTACTTATATTTATAATTTTTCTAATTATCAGAACCAGAGATTATTTTTGTAGGTTCACAGTGGTTTCCTAAGTGCATATGATTCAGTTAGGATTAGGCTCATCTCGCTTATCAAAAAAGCAATTGGCTACCAGTAAGTGGACTGTTAAACAAAACTGTACAACATTGTTCCTCCTTTCCTATGTCTCTTTCGTACCTTCAAGTAGAAGTCGTGTCAAATATTTCTACAAGTCTATACTAAGTGGACTCGTGTCATGAGCTTAGTGTTACACTCCCAACTCTTAAAACTTGTTATGCGCTTTTGCTTTACTGAGATGTCTAGACCTGGCTTAGTCTTTTTTCTTCTGTTTATCCTTCTTTTCGTGTGGGTCTTGTTGCTGCTACTGTACATCTTATTCTTTGCCTTCTTCGCGGTTTCTTCTTTTTCTCTGTTTATGATGTACTTACTTCACCACTAAACATTGACGTCACATCGCTTATTACAATTTTAATGTATTTTCCAGGGATGATGATCTTGACACGCCAAACAAATGGCATGTTTACGTGACTGGCCATAGTCTTGGTGGTGCATTGGCTACTCTTCTCGCTCTTGAACTATCATCAAGTCAACTAGCTAAGTGAGCTCCTCCTTTTCTCTGCTTGTATCTGTAGCTTGTTTCCCATCCATTCTATATAATTTACCATTTACCAGCATCTCGCCAATAGGGCATGCATGTTTGGTTTTCTGCTTTGTATTTAACATGTTTGTAGTGTTCTTTGAGAATTTGAAATGCCTTACTTGAGCAGAGGGTCTATGGAAAACAACCTCTCTATCTCTACGAGGTAGGGTAACGTTTGCATACACTCTACCCTCCTTAGACCCCACCTGTGGACTTGTTTTTTTTTTTTTAAGAGCAGAAGTTGTAGAATTGTTGGTAGAATCCTATCAAATGTAGTTTCGATGCTAGTTACGTAAATAAACCTAACCATGGACTTGTATTCCAGTCTTATATCTATACTGATCAGTATTTGAATGTGTGACATTTTGTACCCAAAACTAATGTGCTACCAAGCTGCAGCACATCCCTTCAATTGTTCCATGTTGCCACTTTGATATCTTCTCTTGATGGTTTCATCCTTTTGACCAAATTGGACTTGTAGGTCCCCAAGTATTGTGATTGCTAAGTTGCTTGCTGCTTGTTCCATCATAATAGAACATCTTGCAAATTAAGGAGTTAGTGCAAAAAGAACGTCTGCAATTGTTAAATACAAATTTTCGGGCTGCCCTTGTTCTTGAAGTACTTGTGGAGAAAAACCAAGTCCTCCATCTCTAATCATGCTAACACTACATACGTGACCGTCTTATCTTTCTTGTTGGTTGTGTTAGGCGTGGAGCTATACGTGTGACCATGTA</genome_strand>
        <mrna_strand>AAGATTCTTCAACTGGACTGGAAAATGACATCCTTTTATATCCCATGAATAAAGATGGAATAGTGTTGGATGAGAAGAAAGCTGAGGAGATGAAGTCTCTTTTCTCAACAGCGGAGACTGCCATGGAAGCTTGGGCACTGCTAGCTACTTCATTGGGACATCCGACATTCATCAAATCTGAATTTGACAAATTATGCTTCTTAGATAATGAGTCAACTGACACAGAG.................................................................................................................GTAGCGCTCTGGCGTGATTCAGCAAGGAAACGGTTAGTTGTTGCTTTCAGGGGAACAGAACAA...............................................................................ACAAAATGGAAGGATCTTGTGACGGACTTGATGCTAGTTCCTGCAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAATCCTGAAAGGATAGGCGGGGACTTCAAGGAAGAAGTTCAG............................................................................................................GTTCACAGTGGTTTCCTAAGTGCATATGATTCAGTTAGGATTAGGCTCATCTCGCTTATCAAAAAAGCAATTGGCTACCA..................................................................................................................................................................................................................................................................................................................................................................................GGATGATGATCTTGACACGCCAAACAAATGGCATGTTTACGTGACTGGCCATAGTCTTGGTGGTGCATTGGCTACTCTTCTCGCTCTTGAACTATCATCAAGTCAACTAGCTAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGAGCTATACGTGTGACCATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E447921" ref_strand="+" ref_description="SGN-E447921 [cSTS-4-O9]">
      <seq>aggctttactttcttaactccgtgccaagtcaaaaccagaaaacaaatcaaaatggagggagtaactttttctccttctctaagttctctgaaagtgtacttttatttgaaatacgactgtttactatgctgaaagaaacatttcctttttcttagaggaataggattggaagaaaaccttccatcctacattattaagtgtagactgcaaataccatcatatctaaaggttttcctgaaaaaagtttgaacttcaaacataatttgaaacaacaagaaatagccaaatgctttggtaattttgaatatgaattgtatgttcttgcatcttcattattcgaatgttggacagaaactttagatggttaagcaaccactgtccattttatttcgtatcctgagttgtctcctactctgcaggttgaatcctgaaaggataggtggggacttcaaggaagaagttcatgtggcactgaagttcttacttttctatctctaagtgcctgaattatgaatgtattctatttatatttataatccttctcattatcagaaccagaggttatttttgtaggttcacagtggtttcctaagtgcatatgactcagttaggattaggctcatctcgcttatcaaaaaagcaattggctaccaggatngatgatcttgacacaccannacaatggcatgttttacgtgactggccatagtcttgggtggtgcattggctactcttctcgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="64150" stop="62487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63892" g_stop="63242" g_length="651"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="654" r_length="654" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63241" i_stop="62872" i_length="370">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.81"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62871" g_stop="62787" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="742" r_length="88" r_score="0.871"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E447921" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E447921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63892" e_stop="63242"/>
          <exon e_start="62871" e_stop="62787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTTACTTTCTTAAACTCTGTGCCAAGTCAAAACCAGTCAAACAAATCGAAACGGAGGGTGTAA-TTTTT-T-CTTCTCTAAG-TCTCTGAAAGTGTACTTTTA-TTGAAATACAACTCTTTACTATGCTGAAAGAAACATTTCCTTTTTCTTAGAGGAATAGGAGTAGAAGATAACCTTCCATCCTACATTATTAAGTTTAGACTGCAAATACCATCATATCTAAAGGTTTTCCTGAAAAAAGTTTTAACTTCGAACATAATTTGAAACAACAAGAAATAGCCAAACACTTTGGTAATTTTGAATATGAATTGTACGTTCTTGCATCTTCATTATTCGGATGTTGTACAGAAACTTTAGATGGTTAAGCAACCACTGTCCATTTTATTTCGCATCCTGAGTTGTCTCCTACTCTGCAGGTTGAATCCTGAAAGGATAGGCGGGGACTTCAAGGAAGAAGTTCAGGTGGCACTGAAATTCTTACTTTTCTATCTCTTAGTGCCTGAAATATGAATGTATTCTACTTATATTTATAATTTTTCTAATTATCAGAACCAGAGATTATTTTTGTAGGTTCACAGTGGTTTCCTAAGTGCATATGATTCAGTTAGGATTAGGCTCATCTCGCTTATCAAAAAAGCAATTGGCTACCAGTAAGTGGACTGTTAAACAAAACTGTACAACATTGTTCCTCCTTTCCTATGTCTCTTTCGTACCTTCAAGTAGAAGTCGTGTCAAATATTTCTACAAGTCTATACTAAGTGGACTCGTGTCATGAGCTTAGTGTTACACTCCCAACTCTTAAAACTTGTTATGCGCTTTTGCTTTACTGAGATGTCTAGACCTGGCTTAGTCTTTTTTCTTCTGTTTATCCTTCTTTTCGTGTGGGTCTTGTTGCTGCTACTGTACATCTTATTCTTTGCCTTCTTCGCGGTTTCTTCTTTTTCTCTGTTTATGATGTACTTACTTCACCACTAAACATTGACGTCACATCGCTTATTACAATTTTAATGTATTTTCCAGGGAT-GATGATCTTGACACGCCAAACAAATGGCATG-TTTACGTGACTGGCCATAGTCTT-GGTGGTGCATTGGCTACTCTTCTCGCT</genome_strand>
        <mrna_strand>AGGCTTTACTTTCTT-AACTCCGTGCCAAGTCAAAACCAG-AAAACAAATCAAAATGGAGGGAGTAACTTTTTCTCCTTCTCTAAGTTCTCTGAAAGTGTACTTTTATTTGAAATACGACTGTTTACTATGCTGAAAGAAACATTTCCTTTTTCTTAGAGGAATAGGATTGGAAGAAAACCTTCCATCCTACATTATTAAGTGTAGACTGCAAATACCATCATATCTAAAGGTTTTCCTGAAAAAAGTTTGAACTTCAAACATAATTTGAAACAACAAGAAATAGCCAAATGCTTTGGTAATTTTGAATATGAATTGTATGTTCTTGCATCTTCATTATTCGAATGTTGGACAGAAACTTTAGATGGTTAAGCAACCACTGTCCATTTTATTTCGTATCCTGAGTTGTCTCCTACTCTGCAGGTTGAATCCTGAAAGGATAGGTGGGGACTTCAAGGAAGAAGTTCATGTGGCACTGAAGTTCTTACTTTTCTATCTCTAAGTGCCTGAATTATGAATGTATTCTATTTATATTTATAATCCTTCTCATTATCAGAACCAGAGGTTATTTTTGTAGGTTCACAGTGGTTTCCTAAGTGCATATGACTCAGTTAGGATTAGGCTCATCTCGCTTATCAAAAAAGCAATTGGCTACCA..................................................................................................................................................................................................................................................................................................................................................................................GGATNGATGATCTTGACACACCANNACAATGGCATGTTTTACGTGACTGGCCATAGTCTTGGGTGGTGCATTGGCTACTCTTCTCGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E412860" ref_strand="+" ref_description="SGN-E412860 [STM-16-N20]">
      <seq>aactctttcattctaactttccacgacatgtttaagaccacaagattacaggtcattttggtaccttctacatatcttaatttaagaccacagtattcaaaagtcttctttactttcttaaactccgtgccaagtcaaaaccagacaaacaaatcaaaatggagggagtaatttttctccttctctaagttctctgaaagtgtacttttattgaaatacgactgtttactatgctgaaagaaacatttcctttttcttagaggaataggattggaagaaaaccttccatcctacattattaagtgtagactgcaaataccatcatatctaaaggttttcctgaaaaaagtttgaacttcaaacataatttgaaacaacaagaaatagccaaatgctttggtaattttgaatatgaattgtatgttcttgcatcttcattattcgaatgttggacagaaactttagatggttaagcaaccactgtccattttatttcgtatcctgagttgtctcctactctgcaggttgaatcctgaaaggataggtggggacttcaaggaagaagttcatgtggcactgaagttcttacttttctatctctaagtgcctgaattatgaatgtattctatttatatttataatccttctcattatcagaaaccagagttatttttgtaggttcaccagtggtttcctaagtgcatatgactcagttaggattaggctcatctcgcttatcaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="64297" stop="62957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63997" g_stop="63257" g_length="741"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="744" r_length="744" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E412860" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E412860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63997" e_stop="63257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCTTTCATTCTAACTTTCCACATGACATGTTTAAGACCACAAGATTACA-GTCATTTTGGTACATTCTACATATCATAATTTAAGACCACAGTATTCAAAAGTCTTCTTTACTTTCTTAAACTCTGTGCCAAGTCAAAACCAGTCAAACAAATCGAAACGGAGGGTGTAATTTTT-T-CTTCTCTAAG-TCTCTGAAAGTGTACTTTTATTGAAATACAACTCTTTACTATGCTGAAAGAAACATTTCCTTTTTCTTAGAGGAATAGGAGTAGAAGATAACCTTCCATCCTACATTATTAAGTTTAGACTGCAAATACCATCATATCTAAAGGTTTTCCTGAAAAAAGTTTTAACTTCGAACATAATTTGAAACAACAAGAAATAGCCAAACACTTTGGTAATTTTGAATATGAATTGTACGTTCTTGCATCTTCATTATTCGGATGTTGTACAGAAACTTTAGATGGTTAAGCAACCACTGTCCATTTTATTTCGCATCCTGAGTTGTCTCCTACTCTGCAGGTTGAATCCTGAAAGGATAGGCGGGGACTTCAAGGAAGAAGTTCAGGTGGCACTGAAATTCTTACTTTTCTATCTCTTAGTGCCTGAAATATGAATGTATTCTACTTATATTTATAATTTTTCTAATTATCAG-AACCAGAGATTATTTTTGTAGGTTCA-CAGTGGTTTCCTAAGTGCATATGATTCAGTTAGGATTAGGCTCATCTCGCTTATCAAAAA</genome_strand>
        <mrna_strand>AACTCTTTCATTCTAACTTTCCAC--GACATGTTTAAGACCACAAGATTACAGGTCATTTTGGTACCTTCTACATATCTTAATTTAAGACCACAGTATTCAAAAGTCTTCTTTACTTTCTTAAACTCCGTGCCAAGTCAAAACCAGACAAACAAATCAAAATGGAGGGAGTAATTTTTCTCCTTCTCTAAGTTCTCTGAAAGTGTACTTTTATTGAAATACGACTGTTTACTATGCTGAAAGAAACATTTCCTTTTTCTTAGAGGAATAGGATTGGAAGAAAACCTTCCATCCTACATTATTAAGTGTAGACTGCAAATACCATCATATCTAAAGGTTTTCCTGAAAAAAGTTTGAACTTCAAACATAATTTGAAACAACAAGAAATAGCCAAATGCTTTGGTAATTTTGAATATGAATTGTATGTTCTTGCATCTTCATTATTCGAATGTTGGACAGAAACTTTAGATGGTTAAGCAACCACTGTCCATTTTATTTCGTATCCTGAGTTGTCTCCTACTCTGCAGGTTGAATCCTGAAAGGATAGGTGGGGACTTCAAGGAAGAAGTTCATGTGGCACTGAAGTTCTTACTTTTCTATCTCTAAGTGCCTGAATTATGAATGTATTCTATTTATATTTATAATCCTTCTCATTATCAGAAACCAGAG-TTATTTTTGTAGGTTCACCAGTGGTTTCCTAAGTGCATATGACTCAGTTAGGATTAGGCTCATCTCGCTTATCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E613843" ref_strand="+" ref_description="SGN-E613843 [63622]">
      <seq>tctttccttttctgaaaactctttcattctaactttccacgacatgttaagaccacaagattacaggtcattttggtaccttctgcatagcttaatttaagaccacagtattcaaaagtcttctttactttcttaaactccatgccaagtcaaaaccagacaaacaaatcgaaacggagggagtaatttttctccttctctaagttctctgaaagtgtacttttattgaaatacaactgtttactatgctgaaagaaacatttcctttttcttagaggaataggattggaagataaccttccatcctacattattaagtgtagactgcaaataccatcatatctaaagattttcctgaaaaaagtttgaacttcaaacataatttgaaacaacaagaaatagccaaacgctttggtaattttgaatatgaattgtatgttcttgcatcttcattattcgaatgttggacagaaactttagatggttaagcaaccactgtccattttatttcgtatcctgagttgtctcctactctgcaggttgaatcctcaaaggataggtggggacttcaaggaagaagttcaggtggcactgaagttcttacttttctatctctaagtgcctgaattatgaatgtattctatttatatttataatccttctcattatcagaaccagaggttatttcgtaggttcacagtgggtttcctaagtgcatatgactcagataggattaggctcatctcgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="64314" stop="62965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64014" g_stop="63265" g_length="750"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="750" r_length="750" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E613843" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E613843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64014" e_stop="63265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTCCTTTTCTGAAAACTCTTTCATTCTAACTTTCCACATGACATGTTTAAGACCACAAGATTACA-GTCATTTTGGTACATTCTACATATCATAATTTAAGACCACAGTATTCAAAAGTCTTCTTTACTTTCTTAAACTCTGTGCCAAGTCAAAACCAGTCAAACAAATCGAAACGGAGGGTGTAATTTTT-T-CTTCTCTAAG-TCTCTGAAAGTGTACTTTTATTGAAATACAACTCTTTACTATGCTGAAAGAAACATTTCCTTTTTCTTAGAGGAATAGGAGTAGAAGATAACCTTCCATCCTACATTATTAAGTTTAGACTGCAAATACCATCATATCTAAAGGTTTTCCTGAAAAAAGTTTTAACTTCGAACATAATTTGAAACAACAAGAAATAGCCAAACACTTTGGTAATTTTGAATATGAATTGTACGTTCTTGCATCTTCATTATTCGGATGTTGTACAGAAACTTTAGATGGTTAAGCAACCACTGTCCATTTTATTTCGCATCCTGAGTTGTCTCCTACTCTGCAGGTTGAATCCTGAAAGGATAGGCGGGGACTTCAAGGAAGAAGTTCAGGTGGCACTGAAATTCTTACTTTTCTATCTCTTAGTGCCTGAAATATGAATGTATTCTACTTATATTTATAATTTTTCTAATTATCAGAACCAGAGATTATTTTTGTAGGTTCACAGT-GGTTTCCTAAGTGCATATGATTCAGTTAGGATTAGGCTCATCTCGCTT</genome_strand>
        <mrna_strand>TCT-TTCCTTTTCTGAAAACTCTTTCATTCTAACTTTCCAC--GACATG-TTAAGACCACAAGATTACAGGTCATTTTGGTACCTTCTGCATAGCTTAATTTAAGACCACAGTATTCAAAAGTCTTCTTTACTTTCTTAAACTCCATGCCAAGTCAAAACCAGACAAACAAATCGAAACGGAGGGAGTAATTTTTCTCCTTCTCTAAGTTCTCTGAAAGTGTACTTTTATTGAAATACAACTGTTTACTATGCTGAAAGAAACATTTCCTTTTTCTTAGAGGAATAGGATTGGAAGATAACCTTCCATCCTACATTATTAAGTGTAGACTGCAAATACCATCATATCTAAAGATTTTCCTGAAAAAAGTTTGAACTTCAAACATAATTTGAAACAACAAGAAATAGCCAAACGCTTTGGTAATTTTGAATATGAATTGTATGTTCTTGCATCTTCATTATTCGAATGTTGGACAGAAACTTTAGATGGTTAAGCAACCACTGTCCATTTTATTTCGTATCCTGAGTTGTCTCCTACTCTGCAGGTTGAATCCTCAAAGGATAGGTGGGGACTTCAAGGAAGAAGTTCAGGTGGCACTGAAGTTCTTACTTTTCTATCTCTAAGTGCCTGAATTATGAATGTATTCTATTTATATTTATAATCCTTCTCATTATCAGAACCAGAGGTTA-TTTCGTAGGTTCACAGTGGGTTTCCTAAGTGCATATGACTCAGATAGGATTAGGCTCATCTCGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573483" ref_strand="+" ref_description="SGN-E573483 [32800]">
      <seq>cacatctttaaaacttgttgatttagcttacttgtggataaccggttgttcttttatctagacaaaatggaaggatcttgtgacgaactttatgctagttcctgcagggtaacatcacaaatctgtacaagcacaggctttctttagtttttttttctctctctactttgtctttctggtttctctgtactactaagttgtttttcctatcacagtaaacagattcttcctccatttcaatttgtttgtcttactttcctttttaatctgtttcgaagagaatgtctctttccttttctgaaaactctttcattctaactttccacgacatgtttaagaccacaagattacaggtcattttggtaccttctgcatagcttaatttaagaccacagtattcaaaagtcttctttactttcttaaactccatgccaagtcaaaaccagacaaacaaatcgaaacggagggagtaatttttctccttctctaagttctctgaaagtgtacttttattgaaatacaactgtttactatgctgaaagaaacatttcctttttcttagaggaataggattggaagataaccttccatcctacattattaagtgtagactgcaaataccatcatatctaaagattttcctgaaaaaagtttgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="64597" stop="63344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64297" g_stop="63644" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E573483" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E573483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64297" e_stop="63644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATCTTTAAAACTTGTTGATTTAGCTTAGTTGTGGATAACCGGTTTTTCTTTTATCCAGACAAAATGGAAGGATCTTGTGACGGACTTGATGCTAGTTCCTGCAGGGTAAAATCACAAATCTGTACAAGCACAGGCTGGCTTTAGTTTTTCTTTCTTTCTCTACTTTGCCCTTCTGGTTTCTCTGTACTACTAAGATGTTTTTCCTATCACAGTAAACAGATTC-TCCTTCCGTTCAATTTGTTTGTCTTACTTTCCTTTTTAATCCGTTTCGAAGAGAATGTCTC-TTCCTTTTCTGAAAACTCTTTCATTCTAACTTTCCACATGACATGTTTAAGACCACAAGATTACA-GTCATTTTGGTACATTCTACATATCATAATTTAAGACCACAGTATTCAAAAGTCTTCTTTACTTTCTTAAACTCTGTGCCAAGTCAAAACCAGTCAAACAAATCGAAACGGAGGGTGTAATTTTT-T-CTTCTCTAAG-TCTCTGAAAGTGTACTTTTATTGAAATACAACTCTTTACTATGCTGAAAGAAACATTTCCTTTTTCTTAGAGGAATAGGAGTAGAAGATAACCTTCCATCCTACATTATTAAGTTTAGACTGCAAATACCATCATATCTAAAGGTTTTCCTGAAAAAAGTTTTAAC</genome_strand>
        <mrna_strand>CACATCTTTAAAACTTGTTGATTTAGCTTACTTGTGGATAACCGGTTGTTCTTTTATCTAGACAAAATGGAAGGATCTTGTGACGAACTTTATGCTAGTTCCTGCAGGGTAACATCACAAATCTGTACAAGCACAGGCTTTCTTTAGTTTTTTTTTCTCTCTCTACTTTGTCTTTCTGGTTTCTCTGTACTACTAAGTTGTTTTTCCTATCACAGTAAACAGATTCTTCCTCCATTTCAATTTGTTTGTCTTACTTTCCTTTTTAATCTGTTTCGAAGAGAATGTCTCTTTCCTTTTCTGAAAACTCTTTCATTCTAACTTTCCAC--GACATGTTTAAGACCACAAGATTACAGGTCATTTTGGTACCTTCTGCATAGCTTAATTTAAGACCACAGTATTCAAAAGTCTTCTTTACTTTCTTAAACTCCATGCCAAGTCAAAACCAGACAAACAAATCGAAACGGAGGGAGTAATTTTTCTCCTTCTCTAAGTTCTCTGAAAGTGTACTTTTATTGAAATACAACTGTTTACTATGCTGAAAGAAACATTTCCTTTTTCTTAGAGGAATAGGATTGGAAGATAACCTTCCATCCTACATTATTAAGTGTAGACTGCAAATACCATCATATCTAAAGATTTTCCTGAAAAAAGTTTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E471295" ref_strand="+" ref_description="SGN-E471295 [cSTB-23-D7]">
      <seq>aactctttcattctaactttccacgacatgtttaagaccacaagattacaggtcattttggtaccttctacatatcttaatttaagaccacagtattcaaaagtcttctttactttcttaaactccgggccaagtcaaaaccagacaaacaaatcaaaatggagggagtgatttttctccttctctaagttctctgaaagtgtacttttattgaaatacgactgtttactatgctgaaagaaacatttcctttttcttaaaggaataggattggaagaaaaccttccatcctacattattaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="64297" stop="63397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63997" g_stop="63697" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E471295" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E471295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63997" e_stop="63697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCTTTCATTCTAACTTTCCACATGACATGTTTAAGACCACAAGATTACA-GTCATTTTGGTACATTCTACATATCATAATTTAAGACCACAGTATTCAAAAGTCTTCTTTACTTTCTTAAACTCTGTGCCAAGTCAAAACCAGTCAAACAAATCGAAACGGAGGGTGTAATTTTT-T-CTTCTCTAAG-TCTCTGAAAGTGTACTTTTATTGAAATACAACTCTTTACTATGCTGAAAGAAACATTTCCTTTTTCTTAGAGGAATAGGAGTAGAAGATAACCTTCCATCCTACATTATTAAG</genome_strand>
        <mrna_strand>AACTCTTTCATTCTAACTTTCCAC--GACATGTTTAAGACCACAAGATTACAGGTCATTTTGGTACCTTCTACATATCTTAATTTAAGACCACAGTATTCAAAAGTCTTCTTTACTTTCTTAAACTCCGGGCCAAGTCAAAACCAGACAAACAAATCAAAATGGAGGGAGTGATTTTTCTCCTTCTCTAAGTTCTCTGAAAGTGTACTTTTATTGAAATACGACTGTTTACTATGCTGAAAGAAACATTTCCTTTTTCTTAAAGGAATAGGATTGGAAGAAAACCTTCCATCCTACATTATTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260252" ref_strand="+" ref_description="SGN-E260252 [cLEG-53-F11]">
      <seq>attcttcaactggactggaaaatgacatccttttatatcccatgaataaagatggaatagtgttggatgagaagaaagctgaggagatgaagtctcttttctcaacagcggagactgccatggaagcttgggcactgctagctacttcattgggacatccgacattcatcaaatctgaatttgacaaattatgcttcttagataatgagtcaactgacacagaggtagcgctctggcgtgattcagcaaggaaacggttagttgttgctttcaggggaacagaacaaacaaaatggaaggatcttgtgacggacttgatgctacttcctgcagggttgaatcctgaaaagata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="65015" stop="63882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64715" g_stop="64492" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64491" i_stop="64379" i_length="113">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64378" g_stop="64316" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="287" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64315" i_stop="64237" i_length="79">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64236" g_stop="64190" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="334" r_length="47" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E260252" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>334</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64715" e_stop="64492"/>
          <exon e_start="64378" e_stop="64316"/>
          <exon e_start="64236" e_stop="64190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTTCAACTGGACTGGAAAATGACATCCTTTTATATCCCATGAATAAAGATGGAATAGTGTTGGATGAGAAGAAAGCTGAGGAGATGAAGTCTCTTTTCTCAACAGCGGAGACTGCCATGGAAGCTTGGGCACTGCTAGCTACTTCATTGGGACATCCGACATTCATCAAATCTGAATTTGACAAATTATGCTTCTTAGATAATGAGTCAACTGACACAGAGGCAAGTTCATATGTTGCTGGCTATGAGTTCTTAGTTTCTAATGTATCTTAGATCTGATTCATTTGATCCAAGGAAAGCTATTCTACTGATTTTGGATTCTGTAAGACTTGCAGGTAGCGCTCTGGCGTGATTCAGCAAGGAAACGGTTAGTTGTTGCTTTCAGGGGAACAGAACAAGTAGGTTCCGGTGTTAAACACATCTTTAAAACTTGTTGATTTAGCTTAGTTGTGGATAACCGGTTTTTCTTTTATCCAGACAAAATGGAAGGATCTTGTGACGGACTTGATGCTAGTTCCTGCAGG</genome_strand>
        <mrna_strand>ATTCTTCAACTGGACTGGAAAATGACATCCTTTTATATCCCATGAATAAAGATGGAATAGTGTTGGATGAGAAGAAAGCTGAGGAGATGAAGTCTCTTTTCTCAACAGCGGAGACTGCCATGGAAGCTTGGGCACTGCTAGCTACTTCATTGGGACATCCGACATTCATCAAATCTGAATTTGACAAATTATGCTTCTTAGATAATGAGTCAACTGACACAGAG.................................................................................................................GTAGCGCTCTGGCGTGATTCAGCAAGGAAACGGTTAGTTGTTGCTTTCAGGGGAACAGAACAA...............................................................................ACAAAATGGAAGGATCTTGTGACGGACTTGATGCTACTTCCTGCAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205316" ref_strand="+" ref_description="SGN-E205316 [cLEC-25-P18]">
      <seq>tcaattcaacaaaggagcagggcttttcggaaagggtgatgctaaagaagattcttcaactggactggaaaatgacatccttttatatcccatgaataaagatggaatagtgttggatgagaagaaagctgaggagatgaagtctcttttctcaacagcggagactgccatggaagcttgggcactgctagctactttattgggacatccgacattcatcaaatctgaatttgacaaattatgcttcttagataatgagtcaactgacacagaggtagcgctctggcgtgattcagcaaggaaacggttagttgttgctttcacgggaacagaacatacaaaatggaaggatcttgtgacggacttgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="65065" stop="63903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64765" g_stop="64492" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64491" i_stop="64379" i_length="113">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64378" g_stop="64316" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="337" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64315" i_stop="64237" i_length="79">
            <donor d_prob="0.910" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64236" g_stop="64203" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="371" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E205316" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64765" e_stop="64492"/>
          <exon e_start="64378" e_stop="64316"/>
          <exon e_start="64236" e_stop="64203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTCAACAAAGGAGCAGGCCTTTTCGGAAAGGGTGATGCTAAAGAAGATTCTTCAACTGGACTGGAAAATGACATCCTTTTATATCCCATGAATAAAGATGGAATAGTGTTGGATGAGAAGAAAGCTGAGGAGATGAAGTCTCTTTTCTCAACAGCGGAGACTGCCATGGAAGCTTGGGCACTGCTAGCTACTTCATTGGGACATCCGACATTCATCAAATCTGAATTTGACAAATTATGCTTCTTAGATAATGAGTCAACTGACACAGAGGCAAGTTCATATGTTGCTGGCTATGAGTTCTTAGTTTCTAATGTATCTTAGATCTGATTCATTTGATCCAAGGAAAGCTATTCTACTGATTTTGGATTCTGTAAGACTTGCAGGTAGCGCTCTGGCGTGATTCAGCAAGGAAACGGTTAGTTGTTGCTTTCAGGGGAACAGAACAAGTAGGTTCCGGTGTTAAACACATCTTTAAAACTTGTTGATTTAGCTTAGTTGTGGATAACCGGTTTTTCTTTTATCCAGACAAAATGGAAGGATCTTGTGACGGACTTGATGC</genome_strand>
        <mrna_strand>TCAATTCAACAAAGGAGCAGGGCTTTTCGGAAAGGGTGATGCTAAAGAAGATTCTTCAACTGGACTGGAAAATGACATCCTTTTATATCCCATGAATAAAGATGGAATAGTGTTGGATGAGAAGAAAGCTGAGGAGATGAAGTCTCTTTTCTCAACAGCGGAGACTGCCATGGAAGCTTGGGCACTGCTAGCTACTTTATTGGGACATCCGACATTCATCAAATCTGAATTTGACAAATTATGCTTCTTAGATAATGAGTCAACTGACACAGAG.................................................................................................................GTAGCGCTCTGGCGTGATTCAGCAAGGAAACGGTTAGTTGTTGCTTTCACGGGAACAGAACAT...............................................................................ACAAAATGGAAGGATCTTGTGACGGACTTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273447" ref_strand="+" ref_description="SGN-E273447 [cLEN-3-F23]">
      <seq>gacttggtctccctgctcctgagaaaataaagtgggataatcttgacttgttaaataagattggattgcaatcacgaaaagacgcggatgcaagttatgttgaatctggtcttgcaactcctgataaacgagaaaatgttaatggtagtgcatcaactgaatcacctattcttaataacattcagtcatcacttccagatatcaagaaggtgacacaagacttattgcgtcaaactgataccattttgggagcattgatggttctaaatgccacagtttctcaattcaacaaaggagcaggccttttcggaaagggtgatgctaaagaagattcttcaactggactggaaaatgacatccttttatatcccatgaataaagatggaatagtgttggatgagaagaaagctgaggagatgaagtctcttttctcaacagcggagactgccatggaagcttgggcactgctagctacttcattgggacatccgacattcatcaaatctgaatttgacaaattatgcttcttagataatgagtcaactgacacagaggtagcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="65345" stop="64189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65045" g_stop="64492" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64491" i_stop="64379" i_length="113">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64378" g_stop="64372" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="561" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E273447" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65045" e_stop="64492"/>
          <exon e_start="64378" e_stop="64372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTGGTCTCCCTGCTCCTGAGAAAATAAAGTGGGATAATCTTGACTTGTTAAATAAGATTGGATTGCAATCACGAAAAGACGCGGATGCAAGTTATGTTGAATCTGGTCTTGCAACTCCTGATAAACGAGAAAATGTTAATGGTAGTGCATCAACTGAATCACCTATTCTTAATAACATTCAGTCATCACTTCCAGATATCAAGAAGGTGACACAAGACTTATTGCGTCAAACTGATACCATTTTGGGAGCATTGATGGTTCTAAATGCCACAGTTTCTCAATTCAACAAAGGAGCAGGCCTTTTCGGAAAGGGTGATGCTAAAGAAGATTCTTCAACTGGACTGGAAAATGACATCCTTTTATATCCCATGAATAAAGATGGAATAGTGTTGGATGAGAAGAAAGCTGAGGAGATGAAGTCTCTTTTCTCAACAGCGGAGACTGCCATGGAAGCTTGGGCACTGCTAGCTACTTCATTGGGACATCCGACATTCATCAAATCTGAATTTGACAAATTATGCTTCTTAGATAATGAGTCAACTGACACAGAGGCAAGTTCATATGTTGCTGGCTATGAGTTCTTAGTTTCTAATGTATCTTAGATCTGATTCATTTGATCCAAGGAAAGCTATTCTACTGATTTTGGATTCTGTAAGACTTGCAGGTAGCGC</genome_strand>
        <mrna_strand>GACTTGGTCTCCCTGCTCCTGAGAAAATAAAGTGGGATAATCTTGACTTGTTAAATAAGATTGGATTGCAATCACGAAAAGACGCGGATGCAAGTTATGTTGAATCTGGTCTTGCAACTCCTGATAAACGAGAAAATGTTAATGGTAGTGCATCAACTGAATCACCTATTCTTAATAACATTCAGTCATCACTTCCAGATATCAAGAAGGTGACACAAGACTTATTGCGTCAAACTGATACCATTTTGGGAGCATTGATGGTTCTAAATGCCACAGTTTCTCAATTCAACAAAGGAGCAGGCCTTTTCGGAAAGGGTGATGCTAAAGAAGATTCTTCAACTGGACTGGAAAATGACATCCTTTTATATCCCATGAATAAAGATGGAATAGTGTTGGATGAGAAGAAAGCTGAGGAGATGAAGTCTCTTTTCTCAACAGCGGAGACTGCCATGGAAGCTTGGGCACTGCTAGCTACTTCATTGGGACATCCGACATTCATCAAATCTGAATTTGACAAATTATGCTTCTTAGATAATGAGTCAACTGACACAGAG.................................................................................................................GTAGCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322184" ref_strand="+" ref_description="SGN-E322184 [cTOB-24-B3]">
      <seq>gatgaacatgattcccctggtactaaaattttagagagctttcaatcagataaacatttctggaagaattttgctgataccgtcaatcaaaaagttgttcaaagacttggtctccctgctcctgagaaaataaagtgggataatcttgacttgttaaataagattggattgcaatcacgaaaagacgcggatgcaagttatgttgaatctggtcttgcaactcctgataaacgagaaaatgttaatggtagtgcatcaactgaatcacctattcttaataacattcagtcatcacttccagatatcaagaaggtgacacaagacttattgcgtcaaactgataccattttgggagcattgatggttctaaatgccacagtttctcaattcaacaaaggagcaggccttttcggaaagggtgatgctaaagaagattcttcaactggactggaaaatgacatccttttatatcccatgaataaagatggaatagtgttggatgagaagaaagctgaggagatgaagtctcttttctcaacagcggagactgccatggaagcttgggcactgctagctacttcattgggacatccgacattcatcaaatctgaatttgacaaattatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="65448" stop="64222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65148" g_stop="64522" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="627" r_length="627" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E322184" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65148" e_stop="64522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAACATGATTCCCCTGGTACTAAAATTTTAGAGAGCTTTCAATCAGATAAACATTTCTGGAAGAATTTTGCTGATACCGTCAATCAAAAAGTTGTTCAAAGACTTGGTCTCCCTGCTCCTGAGAAAATAAAGTGGGATAATCTTGACTTGTTAAATAAGATTGGATTGCAATCACGAAAAGACGCGGATGCAAGTTATGTTGAATCTGGTCTTGCAACTCCTGATAAACGAGAAAATGTTAATGGTAGTGCATCAACTGAATCACCTATTCTTAATAACATTCAGTCATCACTTCCAGATATCAAGAAGGTGACACAAGACTTATTGCGTCAAACTGATACCATTTTGGGAGCATTGATGGTTCTAAATGCCACAGTTTCTCAATTCAACAAAGGAGCAGGCCTTTTCGGAAAGGGTGATGCTAAAGAAGATTCTTCAACTGGACTGGAAAATGACATCCTTTTATATCCCATGAATAAAGATGGAATAGTGTTGGATGAGAAGAAAGCTGAGGAGATGAAGTCTCTTTTCTCAACAGCGGAGACTGCCATGGAAGCTTGGGCACTGCTAGCTACTTCATTGGGACATCCGACATTCATCAAATCTGAATTTGACAAATTATGC</genome_strand>
        <mrna_strand>GATGAACATGATTCCCCTGGTACTAAAATTTTAGAGAGCTTTCAATCAGATAAACATTTCTGGAAGAATTTTGCTGATACCGTCAATCAAAAAGTTGTTCAAAGACTTGGTCTCCCTGCTCCTGAGAAAATAAAGTGGGATAATCTTGACTTGTTAAATAAGATTGGATTGCAATCACGAAAAGACGCGGATGCAAGTTATGTTGAATCTGGTCTTGCAACTCCTGATAAACGAGAAAATGTTAATGGTAGTGCATCAACTGAATCACCTATTCTTAATAACATTCAGTCATCACTTCCAGATATCAAGAAGGTGACACAAGACTTATTGCGTCAAACTGATACCATTTTGGGAGCATTGATGGTTCTAAATGCCACAGTTTCTCAATTCAACAAAGGAGCAGGCCTTTTCGGAAAGGGTGATGCTAAAGAAGATTCTTCAACTGGACTGGAAAATGACATCCTTTTATATCCCATGAATAAAGATGGAATAGTGTTGGATGAGAAGAAAGCTGAGGAGATGAAGTCTCTTTTCTCAACAGCGGAGACTGCCATGGAAGCTTGGGCACTGCTAGCTACTTCATTGGGACATCCGACATTCATCAAATCTGAATTTGACAAATTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706303" ref_strand="+" ref_description="SGN-E706303 [FA29CD02]">
      <seq>gtttgctttaaatattaagcagccacctctgtatgatcttcagattgcagcttgggatgcaaatctggtgactccacataaacgcatgggaaatgcagcagttaatttggaacatctctgtgatggagattctcataaactgctggttgatttggatggaatgggcggtggtgggaagatagagatagagattaagtacaagagttttgagaaaattgaagaagaaaagaagtggtggaacatcccaatcattacagaatttctaagaaaaaacgggtttgagtctgctttgaagacaattcttggttccgagactgttcaagctcgacaatttgtacagtttgcgtttggacagatgaagctacttaatgatgcatataatgattcaaatagcagcagcagtcctgtcctggaatcagatgtactaccggagtcgcagcaatcatccaacttggatgactcaagcatgcccccagcatcagaaatctcaaataatttgaaagacaccaaagttgatggtgaagtgaagcttaatcgtgatggaagtgacgtaaccgatgaacatgattcccctggtactaaaattttagagagctttcaatcagataaacatttctggaagaattttgctgataccgtcaatcaaaaagttgttcaaagacttggtctccctgctccctgagaaaataaagtgggataatcttgacttgttaaataagattggattgcaatcacgaaaagacgcggatgcaagttatgttgaatctggtcttgcaactcctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="67241" stop="64621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66941" g_stop="66899" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66898" i_stop="66255" i_length="644">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66254" g_stop="66173" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="125" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66172" i_stop="65800" i_length="373">
            <donor d_prob="0.770" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65799" g_stop="65735" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="190" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65734" i_stop="65515" i_length="220">
            <donor d_prob="0.765" d_score="1.00"/>
            <acceptor a_prob="0.844" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65514" g_stop="64921" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="785" r_length="595" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E706303" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66941" e_stop="66899"/>
          <exon e_start="66254" e_stop="66173"/>
          <exon e_start="65799" e_stop="65735"/>
          <exon e_start="65514" e_stop="64921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGCTTTAAATATTAAGCAGCCACCTCTGTATGATCTTCAGGTTGATAACTTGAGTTAATCCTTTCTCTCTAATAGTTTATTAATTAAAGGATAGCATTCCAGAAACTGTAACATTTTGCTTTTGAAATACGACTTCAATTTGCTGTAACTTAGCTCTTCCACATTAGGAAGTTTACGACACGGTATGTGGTACACCAAATCTCCTAATGATAAATGAGCAGTTCTGGTAAGATATGCAACTTGAAAAGCTTTAAGCTAACACTGCTAAATTAACTGTCTTCTGACTGACTGCTAATTCAATTATGAACGTGTATGTGAACTTCCCATATCCAACAATGTCTTTCTTGCTGAATGCTAGTTTTTCATTTCTACTTCCTGCTGAGATCCATAGTATTAACCAAATTGGAACAAACAGAATCAGTCTTTTAAGGTTATCGGCCTCGGACTAGAACTTACGGACTCGGAACTGCACATCTTGCTTTATGTTGTCTAAGATATCCATAAGAGTCTGCTTCTGTCTTTTTAGCTGCAGTCTTTAAAATGAGGAACAACTTATTTTTTCGTTATTTTTACCGTTATCTGCTCATTAGAGGACTTTCGGATGCAGTATGCTGGCATGACATGTTTTTAGGTGCTCTTATTTCTCGATTCCAGATCTGATGAATTATTCATTACTACTGTCAGATTGCAGCTTGGGATGCAAATCTGGTGACTCCACATAAACGCATGGGAAATGCAGCAGTTAATTTGGAACATCTCTGTGATGGTACGAGCTCAAGAAATGGTTCTCGTGATATATTGTGCTTCAAATAATTGTCTAGTTATCATGTTGGCTAAAATTTCATTCATGTAAATAAGGTTTGGCTTCCTTTCCAACTTATCCCATGAAAATGGGGGAAGAAGTTAAGAGTTCATTTTCAGTATGCATTTTGGTTGTGTTTTGATGACTACGTTGAAGGTGTCTCATTGCTCATAAAACAAATTGACAAAGGAAGAACACTTAAAGGAACCAAATTAGTTTCAATAGTTATATACTTCTGAATACTGTCATAACTGATATGAGAGCTGACATAAGGATTAGGCTGATATACAAACATTGATGTTTTAATTTGTGAAAATAACAAACATGTGTTTTCTAGGAGATTCTCATAAACTGCTGGTTGATTTGGATGGAATGGGCGGTGGTGGGAAGATAGAGATAGAGGTAAGTTGATTTGAATCTGGAGGCATATTCAAGGTTCAAGATCGCTAAGACCTTCATTTTACGAGGATTTATCAGACCATCACATTATTTTGATGTGTACACTCTATAGCTGATTAGTATGCTAATCTTAACTTCAGAATATCCTTCTTAAATGATACTCAATTTGACCATTGTTTATCCAATTCGAGATTCCACTAATTGTCCTACTAACATGATACAGATTAAGTACAAGAGTTTTGAGAAAATTGAAGAAGAAAAGAAGTGGTGGAACATCCCAATCATTACAGAATTTCTAAGAAAAAACGGGTTTGAGTCTGCTTTGAAGACAATTCTTGGTTCCGAGACTGTTCAAGCTCGACAATTTGTACAGTTTGCGTTTGGACAGATGAAGCTACTTAATGATGCATATAATGATTCAAATAGCAGCAGCAGTCCTGTCCTGGAATCAGATGTACTACCGGAGTCGCAGCAATCATCCAACTTGGATGACTCAAGCATGCCCCCAGCATCAGAAATCTCAAATAATTTGAAAGACACCAAAGTTGATGGTGAAGTGAAGCTTAATCGTGATGGAAGTGACGTAACCGATGAACATGATTCCCCTGGTACTAAAATTTTAGAGAGCTTTCAATCAGATAAACATTTCTGGAAGAATTTTGCTGATACCGTCAATCAAAAAGTTGTTCAAAGACTTGGTCTCCCTGCT-CCTGAGAAAATAAAGTGGGATAATCTTGACTTGTTAAATAAGATTGGATTGCAATCACGAAAAGACGCGGATGCAAGTTATGTTGAATCTGGTCTTGCAACTCCTGAT</genome_strand>
        <mrna_strand>GTTTGCTTTAAATATTAAGCAGCCACCTCTGTATGATCTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAGCTTGGGATGCAAATCTGGTGACTCCACATAAACGCATGGGAAATGCAGCAGTTAATTTGGAACATCTCTGTGATG.....................................................................................................................................................................................................................................................................................................................................................................................GAGATTCTCATAAACTGCTGGTTGATTTGGATGGAATGGGCGGTGGTGGGAAGATAGAGATAGAG............................................................................................................................................................................................................................ATTAAGTACAAGAGTTTTGAGAAAATTGAAGAAGAAAAGAAGTGGTGGAACATCCCAATCATTACAGAATTTCTAAGAAAAAACGGGTTTGAGTCTGCTTTGAAGACAATTCTTGGTTCCGAGACTGTTCAAGCTCGACAATTTGTACAGTTTGCGTTTGGACAGATGAAGCTACTTAATGATGCATATAATGATTCAAATAGCAGCAGCAGTCCTGTCCTGGAATCAGATGTACTACCGGAGTCGCAGCAATCATCCAACTTGGATGACTCAAGCATGCCCCCAGCATCAGAAATCTCAAATAATTTGAAAGACACCAAAGTTGATGGTGAAGTGAAGCTTAATCGTGATGGAAGTGACGTAACCGATGAACATGATTCCCCTGGTACTAAAATTTTAGAGAGCTTTCAATCAGATAAACATTTCTGGAAGAATTTTGCTGATACCGTCAATCAAAAAGTTGTTCAAAGACTTGGTCTCCCTGCTCCCTGAGAAAATAAAGTGGGATAATCTTGACTTGTTAAATAAGATTGGATTGCAATCACGAAAAGACGCGGATGCAAGTTATGTTGAATCTGGTCTTGCAACTCCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249722" ref_strand="+" ref_description="SGN-E249722 [cLEF-56-N18]">
      <seq>taatttggaacatctctgtgatggagattctggtaaactggtggttgatttggatggaatgggcggtggtgggaagatagagatagagattaagtacaagagttttgagaaaattgaagaagaaaagaagtggtggaacatcccaatcattacagaatttctaagaaaaaacgggtttgagtctgctttgaagacaattcttggttccgagactgttcaagctcgacaatttgtacagtttgcgtttggacagatgaagctacttaatgatgcatataatgattcaaatagcagcagcagtcctgtcctggaatcagatgtactaccggagtcgcagcaatcatccaacttggatgactcaagcatgcccccagcatcagaaatctcaaataatttgaaagacaccaaagttgatggtgaagtgaagcttaatcgtgatggaagtgacgtaaccgatgaacatgattcccctggtactaaaattttagagagctttcaatcagataaacatttctggaagaattttgctgataccgtcaatcaaaaagttgttcaaagacttggtctccctgctcctgagaaaataaagtgggataatcttgacttgtttaataagattggattgcaatcacgaaaagacgcggatgcaagttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="66495" stop="64647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66195" g_stop="66173" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66172" i_stop="65800" i_length="373">
            <donor d_prob="0.770" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65799" g_stop="65735" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="88" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65734" i_stop="65515" i_length="220">
            <donor d_prob="0.765" d_score="0.98"/>
            <acceptor a_prob="0.844" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65514" g_stop="64947" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="656" r_length="568" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E249722" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66195" e_stop="66173"/>
          <exon e_start="65799" e_stop="65735"/>
          <exon e_start="65514" e_stop="64947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTGGAACATCTCTGTGATGGTACGAGCTCAAGAAATGGTTCTCGTGATATATTGTGCTTCAAATAATTGTCTAGTTATCATGTTGGCTAAAATTTCATTCATGTAAATAAGGTTTGGCTTCCTTTCCAACTTATCCCATGAAAATGGGGGAAGAAGTTAAGAGTTCATTTTCAGTATGCATTTTGGTTGTGTTTTGATGACTACGTTGAAGGTGTCTCATTGCTCATAAAACAAATTGACAAAGGAAGAACACTTAAAGGAACCAAATTAGTTTCAATAGTTATATACTTCTGAATACTGTCATAACTGATATGAGAGCTGACATAAGGATTAGGCTGATATACAAACATTGATGTTTTAATTTGTGAAAATAACAAACATGTGTTTTCTAGGAGATTCTCATAAACTGCTGGTTGATTTGGATGGAATGGGCGGTGGTGGGAAGATAGAGATAGAGGTAAGTTGATTTGAATCTGGAGGCATATTCAAGGTTCAAGATCGCTAAGACCTTCATTTTACGAGGATTTATCAGACCATCACATTATTTTGATGTGTACACTCTATAGCTGATTAGTATGCTAATCTTAACTTCAGAATATCCTTCTTAAATGATACTCAATTTGACCATTGTTTATCCAATTCGAGATTCCACTAATTGTCCTACTAACATGATACAGATTAAGTACAAGAGTTTTGAGAAAATTGAAGAAGAAAAGAAGTGGTGGAACATCCCAATCATTACAGAATTTCTAAGAAAAAACGGGTTTGAGTCTGCTTTGAAGACAATTCTTGGTTCCGAGACTGTTCAAGCTCGACAATTTGTACAGTTTGCGTTTGGACAGATGAAGCTACTTAATGATGCATATAATGATTCAAATAGCAGCAGCAGTCCTGTCCTGGAATCAGATGTACTACCGGAGTCGCAGCAATCATCCAACTTGGATGACTCAAGCATGCCCCCAGCATCAGAAATCTCAAATAATTTGAAAGACACCAAAGTTGATGGTGAAGTGAAGCTTAATCGTGATGGAAGTGACGTAACCGATGAACATGATTCCCCTGGTACTAAAATTTTAGAGAGCTTTCAATCAGATAAACATTTCTGGAAGAATTTTGCTGATACCGTCAATCAAAAAGTTGTTCAAAGACTTGGTCTCCCTGCTCCTGAGAAAATAAAGTGGGATAATCTTGACTTGTTAAATAAGATTGGATTGCAATCACGAAAAGACGCGGATGCAAGTTATG</genome_strand>
        <mrna_strand>TAATTTGGAACATCTCTGTGATG.....................................................................................................................................................................................................................................................................................................................................................................................GAGATTCTGGTAAACTGGTGGTTGATTTGGATGGAATGGGCGGTGGTGGGAAGATAGAGATAGAG............................................................................................................................................................................................................................ATTAAGTACAAGAGTTTTGAGAAAATTGAAGAAGAAAAGAAGTGGTGGAACATCCCAATCATTACAGAATTTCTAAGAAAAAACGGGTTTGAGTCTGCTTTGAAGACAATTCTTGGTTCCGAGACTGTTCAAGCTCGACAATTTGTACAGTTTGCGTTTGGACAGATGAAGCTACTTAATGATGCATATAATGATTCAAATAGCAGCAGCAGTCCTGTCCTGGAATCAGATGTACTACCGGAGTCGCAGCAATCATCCAACTTGGATGACTCAAGCATGCCCCCAGCATCAGAAATCTCAAATAATTTGAAAGACACCAAAGTTGATGGTGAAGTGAAGCTTAATCGTGATGGAAGTGACGTAACCGATGAACATGATTCCCCTGGTACTAAAATTTTAGAGAGCTTTCAATCAGATAAACATTTCTGGAAGAATTTTGCTGATACCGTCAATCAAAAAGTTGTTCAAAGACTTGGTCTCCCTGCTCCTGAGAAAATAAAGTGGGATAATCTTGACTTGTTTAATAAGATTGGATTGCAATCACGAAAAGACGCGGATGCAAGTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319351" ref_strand="+" ref_description="SGN-E319351 [cTOB-15-K15]">
      <seq>aaagaagtggtggaacatcccaatcattacagaatttctaagaaaaaacgggtttgagtctgctttgaagacaattcttggttccgagactgttcaagctcgacaatttgtacagtttgcgtttggacagatgaagctacttaatgatgcatataatgattcaaatagcagcagcagtcctgtcctggaatcagatgtactaccggagtcgcagcaatcatccaacttggatgactcaagcatgcccccagcatcagaaatctcaaataatttgaaagacaccaaagttgatggtgaagtgaagcttaatcgtgatggaagtgacgtaaccgatgaacatgattcccctggtactaaaattttagagagctttcaatcagataaacatttctggaagaattttgctgataccgtcaatcaaaaagttgttcaaagacttggtctccctgctcctgagaaaataaagtgggataatcttgacttgttaaataagattggattgcaatcacgaaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="65779" stop="64664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65479" g_stop="64964" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E319351" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65479" e_stop="64964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAGTGGTGGAACATCCCAATCATTACAGAATTTCTAAGAAAAAACGGGTTTGAGTCTGCTTTGAAGACAATTCTTGGTTCCGAGACTGTTCAAGCTCGACAATTTGTACAGTTTGCGTTTGGACAGATGAAGCTACTTAATGATGCATATAATGATTCAAATAGCAGCAGCAGTCCTGTCCTGGAATCAGATGTACTACCGGAGTCGCAGCAATCATCCAACTTGGATGACTCAAGCATGCCCCCAGCATCAGAAATCTCAAATAATTTGAAAGACACCAAAGTTGATGGTGAAGTGAAGCTTAATCGTGATGGAAGTGACGTAACCGATGAACATGATTCCCCTGGTACTAAAATTTTAGAGAGCTTTCAATCAGATAAACATTTCTGGAAGAATTTTGCTGATACCGTCAATCAAAAAGTTGTTCAAAGACTTGGTCTCCCTGCTCCTGAGAAAATAAAGTGGGATAATCTTGACTTGTTAAATAAGATTGGATTGCAATCACGAAAAGA</genome_strand>
        <mrna_strand>AAAGAAGTGGTGGAACATCCCAATCATTACAGAATTTCTAAGAAAAAACGGGTTTGAGTCTGCTTTGAAGACAATTCTTGGTTCCGAGACTGTTCAAGCTCGACAATTTGTACAGTTTGCGTTTGGACAGATGAAGCTACTTAATGATGCATATAATGATTCAAATAGCAGCAGCAGTCCTGTCCTGGAATCAGATGTACTACCGGAGTCGCAGCAATCATCCAACTTGGATGACTCAAGCATGCCCCCAGCATCAGAAATCTCAAATAATTTGAAAGACACCAAAGTTGATGGTGAAGTGAAGCTTAATCGTGATGGAAGTGACGTAACCGATGAACATGATTCCCCTGGTACTAAAATTTTAGAGAGCTTTCAATCAGATAAACATTTCTGGAAGAATTTTGCTGATACCGTCAATCAAAAAGTTGTTCAAAGACTTGGTCTCCCTGCTCCTGAGAAAATAAAGTGGGATAATCTTGACTTGTTAAATAAGATTGGATTGCAATCACGAAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250761" ref_strand="+" ref_description="SGN-E250761 [cLEG-7-D4]">
      <seq>aaaagcaaggtgaaatgggggacaaaagagccaatgtggaatgaggagtttgctttaaatattaagcagccacctctgtatgatcttcagattgcagcttgggatgcaaatctggtgactccacataaacgcatgggaaatgcagcagttaatttggaacatctctgtgatggagattctcataaactgctggttgatttggatggaatgggcggtggtgggaagatagagatagagattaagtacaagagttttgagaaaattgaagaagaaaagaagtggtggaacatcccaatcattacagaatttctaagaaaaaacgggtttgagtctgctttgaagacaattcttggttccgagactgttcaagctcgacaatttgtacagtttgcgtttggacagatgaagctacttaatgatgcatataatgattcaaatagcagcagcagtcctgtcctggaatcagatgtactaccggagtcgcagcaatcatccaacttggatgactcaagcatgcccccagcatcagaaatctcaaataatttgaaagacaccaaagttgatggtgaagtgaagcttaatcgtgatggaagtgacgtaaccgatgaacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="67797" stop="64839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67497" g_stop="67478" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67477" i_stop="66969" i_length="509">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66968" g_stop="66899" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="90" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66898" i_stop="66255" i_length="644">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66254" g_stop="66173" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="172" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66172" i_stop="65800" i_length="373">
            <donor d_prob="0.770" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65799" g_stop="65735" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="237" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65734" i_stop="65515" i_length="220">
            <donor d_prob="0.765" d_score="1.00"/>
            <acceptor a_prob="0.844" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65514" g_stop="65139" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="613" r_length="376" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E250761" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67497" e_stop="67478"/>
          <exon e_start="66968" e_stop="66899"/>
          <exon e_start="66254" e_stop="66173"/>
          <exon e_start="65799" e_stop="65735"/>
          <exon e_start="65514" e_stop="65139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCAAGGTGAAATGGGGGTAGGTAGTTGGTCATGTGTTAAACTGCAACCTTCTACTCTTTTCAGTCAGAACTTCTCTAGATCTTGTAGGTTTACTTAACAATGAGTCAGGTTCGTTGCATGTCGTCAACGTGTTCCTGTGCAAGTATTGCTTGCATAAGCCGAATGATAAAGTAACTAATATGAGAGTCTATTATGGTTACTAAATTCAGTCTTCTCTTCTGTTTGAGCAACGTATCAAATTTTTAGCAAAAACTTATTCTGGATTTAGTAAAATACAATTATTTTTCATCCATAACTCATATTCTATTGTTATCTTGAGTGTGATTATTCCACCAGTATCTTATTTGAAGTTCCATGCTTCTTTATCCTTTTAATTTGTCATCGAGAAGGCAAAAGGTCTACAATTGCTATTTTCTGTTGGAGAATAAAGCTATCCTTTTCTTTGTTCAAATTATGCACTATTTCAATCTTGAAACATAATCCAATAACGGAAAAAATGTTAATTTCATGAATTAATGTTTGCAGGACAAAAGAGCCAATGTGGAATGAGGAGTTTGCTTTAAATATTAAGCAGCCACCTCTGTATGATCTTCAGGTTGATAACTTGAGTTAATCCTTTCTCTCTAATAGTTTATTAATTAAAGGATAGCATTCCAGAAACTGTAACATTTTGCTTTTGAAATACGACTTCAATTTGCTGTAACTTAGCTCTTCCACATTAGGAAGTTTACGACACGGTATGTGGTACACCAAATCTCCTAATGATAAATGAGCAGTTCTGGTAAGATATGCAACTTGAAAAGCTTTAAGCTAACACTGCTAAATTAACTGTCTTCTGACTGACTGCTAATTCAATTATGAACGTGTATGTGAACTTCCCATATCCAACAATGTCTTTCTTGCTGAATGCTAGTTTTTCATTTCTACTTCCTGCTGAGATCCATAGTATTAACCAAATTGGAACAAACAGAATCAGTCTTTTAAGGTTATCGGCCTCGGACTAGAACTTACGGACTCGGAACTGCACATCTTGCTTTATGTTGTCTAAGATATCCATAAGAGTCTGCTTCTGTCTTTTTAGCTGCAGTCTTTAAAATGAGGAACAACTTATTTTTTCGTTATTTTTACCGTTATCTGCTCATTAGAGGACTTTCGGATGCAGTATGCTGGCATGACATGTTTTTAGGTGCTCTTATTTCTCGATTCCAGATCTGATGAATTATTCATTACTACTGTCAGATTGCAGCTTGGGATGCAAATCTGGTGACTCCACATAAACGCATGGGAAATGCAGCAGTTAATTTGGAACATCTCTGTGATGGTACGAGCTCAAGAAATGGTTCTCGTGATATATTGTGCTTCAAATAATTGTCTAGTTATCATGTTGGCTAAAATTTCATTCATGTAAATAAGGTTTGGCTTCCTTTCCAACTTATCCCATGAAAATGGGGGAAGAAGTTAAGAGTTCATTTTCAGTATGCATTTTGGTTGTGTTTTGATGACTACGTTGAAGGTGTCTCATTGCTCATAAAACAAATTGACAAAGGAAGAACACTTAAAGGAACCAAATTAGTTTCAATAGTTATATACTTCTGAATACTGTCATAACTGATATGAGAGCTGACATAAGGATTAGGCTGATATACAAACATTGATGTTTTAATTTGTGAAAATAACAAACATGTGTTTTCTAGGAGATTCTCATAAACTGCTGGTTGATTTGGATGGAATGGGCGGTGGTGGGAAGATAGAGATAGAGGTAAGTTGATTTGAATCTGGAGGCATATTCAAGGTTCAAGATCGCTAAGACCTTCATTTTACGAGGATTTATCAGACCATCACATTATTTTGATGTGTACACTCTATAGCTGATTAGTATGCTAATCTTAACTTCAGAATATCCTTCTTAAATGATACTCAATTTGACCATTGTTTATCCAATTCGAGATTCCACTAATTGTCCTACTAACATGATACAGATTAAGTACAAGAGTTTTGAGAAAATTGAAGAAGAAAAGAAGTGGTGGAACATCCCAATCATTACAGAATTTCTAAGAAAAAACGGGTTTGAGTCTGCTTTGAAGACAATTCTTGGTTCCGAGACTGTTCAAGCTCGACAATTTGTACAGTTTGCGTTTGGACAGATGAAGCTACTTAATGATGCATATAATGATTCAAATAGCAGCAGCAGTCCTGTCCTGGAATCAGATGTACTACCGGAGTCGCAGCAATCATCCAACTTGGATGACTCAAGCATGCCCCCAGCATCAGAAATCTCAAATAATTTGAAAGACACCAAAGTTGATGGTGAAGTGAAGCTTAATCGTGATGGAAGTGACGTAACCGATGAACATG</genome_strand>
        <mrna_strand>AAAAGCAAGGTGAAATGGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAAAGAGCCAATGTGGAATGAGGAGTTTGCTTTAAATATTAAGCAGCCACCTCTGTATGATCTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAGCTTGGGATGCAAATCTGGTGACTCCACATAAACGCATGGGAAATGCAGCAGTTAATTTGGAACATCTCTGTGATG.....................................................................................................................................................................................................................................................................................................................................................................................GAGATTCTCATAAACTGCTGGTTGATTTGGATGGAATGGGCGGTGGTGGGAAGATAGAGATAGAG............................................................................................................................................................................................................................ATTAAGTACAAGAGTTTTGAGAAAATTGAAGAAGAAAAGAAGTGGTGGAACATCCCAATCATTACAGAATTTCTAAGAAAAAACGGGTTTGAGTCTGCTTTGAAGACAATTCTTGGTTCCGAGACTGTTCAAGCTCGACAATTTGTACAGTTTGCGTTTGGACAGATGAAGCTACTTAATGATGCATATAATGATTCAAATAGCAGCAGCAGTCCTGTCCTGGAATCAGATGTACTACCGGAGTCGCAGCAATCATCCAACTTGGATGACTCAAGCATGCCCCCAGCATCAGAAATCTCAAATAATTTGAAAGACACCAAAGTTGATGGTGAAGTGAAGCTTAATCGTGATGGAAGTGACGTAACCGATGAACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479157" ref_strand="+" ref_description="SGN-E479157 [cSTD-8-J16]">
      <seq>atataaacaaccccaattcagtttctttctcaaaaaggctttttttctccataaagcttaatgggttgtttagttattctaaatttggtgcaaaagattcattcttttgttgttgtcaaactagtggtgaacttttacccctttcatcagctcataaggagaaggacactaatgaaaggcctccttttgatatcaattgggctgtcattcttgctggttttgctttagaaactcatactattcctccagactatgtccgaaagcttgaagtggatgcggctaattgcaaaaccatatttctttcagagtcatttgtgcgtgaaatttatgatggccaggtgttctgtgaagctaaagaaaggcctcaacttacctgctatggatccttgcggaacgagtgatccgtatgtggtgttacagctagatactcaagttgtcaaaagcaaagtgaaatgggggacataagagccaacatggaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="69978" stop="67171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69678" g_stop="69431" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69430" i_stop="68182" i_length="1249">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.956" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68181" g_stop="68123" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="307" r_length="59" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68122" i_stop="67782" i_length="341">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.850" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67781" g_stop="67700" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="390" r_length="83" r_score="0.890"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67699" i_stop="67546" i_length="154">
            <donor d_prob="0.962" d_score="0.84"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67545" g_stop="67478" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="458" r_length="68" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E479157" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E479157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69678" e_stop="69431"/>
          <exon e_start="68181" e_stop="68123"/>
          <exon e_start="67781" e_stop="67700"/>
          <exon e_start="67545" e_stop="67478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCAAGAACCCCAATTCAGTTTCTTTCTCAAAAAAGCTTTTTTTCTCAAGAAAAGTTAATGGGTTGTTTAGTTATTCTAAATTTGGTGCAAAAGATTCATTCTTTTGTTGTAGTCAAACTAGTGGTGAAATTTTACCCCTTTCATCAGCTCAGAAGGAGAAGGAGACTAGTGAAAGGCCTCCTTTTGATATCAATTTGGCTGTCATTCTTGCTGGTTTTGCTTTTGAAGCTTATACTAGTCCTCCAGTAAATTCTCAATCTTTATATGTTCATTTTTATGTTTTTCTCTGCTCAGTTGGTTGGTTATCAAACTTGTTGAGGGACTCAATTTTTTACCCTGTAAGCCCCTACCTTATTTTGAAAATTGAAACATTGAAATAATAAATTGAAAAATAGATTCTGATAGATAAGGTCTTTCGGGTATAGTCTCTCTACCTCTACGAGATAGTGGTAAGGTCTGCATGCAAGGGGAAAATGAAAGTGCATTCCTGTGCACCAGTTGAAAAAAGGAGCTTTGGAAGCTTACCTTATTATTATATTAAAATGGGAAATCTACCCTCCCGGACTCCTCTTGTGGGATTTTGTTGTTGTTCATTGTATTCTGATAGAGAAAATGGTATTGAGGTGTAGTTGATTGGCTAAAAAAATCATATCTTTTTTGTAAATAAGAGTGTTGATAGGTATGTAGTTGTTCATTTTTCTGTTTCTTTCTTTATTAATTAATTGAAAATGGACTTAAATAGAGTGTATGGATATTGAGGATTCTTGTAGTAGATAACTCCAACTAGCTTGGAATTGAGGTGTAGTTGATTGATTGGCTAAAAGTTTCTCTCTTTTTTGTAAATAAGAATGTTATGTATGTAGCTGTTTATTTTTCTGTTGCTTTTTTTTTAATAAATTGAAAATGGACTCGAATAGAGTAAATGGATATTGAGGATTCGTATAGTGGACTCCAACTAGTTTGGGGTTGAGTTGGAGTTGATTGATCGACTGTTGATTCATTTTTTGTATATAAGCATGATGATATTAGCTGTGGATTGGAGGAATTGCTTGCCAAAGTATCTTGCATTGTGGGTTCTTTCGGTTTGGCAGTGTAGAAGTCATAGCGGACATGCTTGTAAAGTATGATTTTCTGCTGCCTTAAAGTTGTGATCTTTGAGTGTCAGTAATTCGTTTTCATTCGTATTATTGTTTTGGCATCTTATCACTCTGTTGTGATTCTAGTTTAGAAATGAACATAAATGTGCTTCCCCTATAGTAGTCATACCCCACATACTCATGATAGTAAATGAAGGGAATATTTTCATTATAAACATATATAAGGTGATGATCACTTGCCTAACTGGATTTTCGTTGAACTAAATTTTGCTTAGAAGTAAATTAGGCTTGCAAGTATTCTACAAATCTATAAATGTTTATGTAGCAAATGGTAATTAAGCAGTTGAATTGTTTTCCAAGTCTGATCCAATTTGCTTTGTTTGACATTGCTTGTCAGGACAATGTCGGAAAGCTTGAGGTGGATGCGGCTAATTGCAAAACCATATTTCTTTCAGAGTATGTAGTTGTTTTCTTTCTACTGAAATAGTAAACTTAAACTGTAGGAACTTGAGTTATAGGTTAAATTGGTCGGATCAAGTAAAGGGCACACGTATGTTCCACTGGTGAAGGCTATGAAGAGTGCTCATATCTGATTGTTTTTGTCTCATTCAGCTAGTGTGATTTTCTTTTTCTTTTAAATCAAAATCAACTTAGACAATATTTCAGTTTGCCGAAAACTAGATTCATGCATGTGCAACTGCAAATGAGTTGGATATGCCTGTTTCATTCGAAGGTAGTAGGATTTGGCGTGGATCATGATTGATAATTCTCTCTCATAATTGACAACCATCTTCCAGGTCATTTGTGCGTGAAATTTATGATGGCCAGTTGTTC-ATAAAGCTAAAGAAAGGTCTCAATTTACCTGCTATGGATCTTTGGGTAAGGTTTCTACCATTTAATATTAGCAAATGATCAAATTTCAATTGAAACGTGCCTTACTGTACTTTCCTTATTCAAATGATTGCTTCTTATGCATTTATTTAATCTGCTGACTCCTGTTTTAATTTAATTGCCTACTCTAACCAAATTTCAGGGAACGAGTGATCCGTATGTGGTGTTACAGCTAGATAGTCAAGTTGTCAAAAGCAAGGTGAAATGGGG</genome_strand>
        <mrna_strand>ATATAAACAACCCCAATTCAGTTTCTTTCTCAAAAAGGCTTTTTTTCTCCATAAAGCTTAATGGGTTGTTTAGTTATTCTAAATTTGGTGCAAAAGATTCATTCTTTTGTTGTTGTCAAACTAGTGGTGAACTTTTACCCCTTTCATCAGCTCATAAGGAGAAGGACACTAATGAAAGGCCTCCTTTTGATATCAATTGGGCTGTCATTCTTGCTGGTTTTGCTTTAGAAACTCATACTATTCCTCCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTATGTCCGAAAGCTTGAAGTGGATGCGGCTAATTGCAAAACCATATTTCTTTCAGA.....................................................................................................................................................................................................................................................................................................................................................GTCATTTGTGCGTGAAATTTATGATGGCCAGGTGTTCTGTGAAGCTAAAGAAAGGCCTCAACTTACCTGCTATGGATCCTTGC..........................................................................................................................................................GGAACGAGTGATCCGTATGTGGTGTTACAGCTAGATACTCAAGTTGTCAAAAGCAAAGTGAAATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217258" ref_strand="+" ref_description="SGN-E217258 [cLEL-21-N11](-)">
      <seq>gcaagtgatccatatggctcaaggtgcagttgatggagtgaagaacacaccttgaattggatcagacaaaaagtgaaaaagagaaaatgaaattaattaattaattaattaattaattaacacatttatcaatttatatatctcaattttaattaatttttcatttaattctatgattttcacatatgctttagattattaagcataagtgaaaaaacataatattattagtttgtgagatctctcaccaaaagaattacaaaatttaattcttataaagtgagatgattttcataggtttggtttaattattgtttaacaattccatgcaccttatattggtgttatagtgaattttgttttattgatcgagatttctctcgttagaaattctcattataagtacgtaataagaaagttttattttgtttttgttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="72234" stop="71197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71934" g_stop="71498" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="438" polyA_stop="454"/>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E217258" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71934" e_stop="71498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGTGATCCATATGGCTCAAGGTGCAGTTGATGGAGTGAAGAACACACTTGGAATTGGATCAGACAAAAAGTGAAAAAGAGAAAATGAAATTAATTAATTAATTAATTAATTAATTAACACATTTATCAATTTATATATCTCAATTTTAATTAATTTTTCATTTAATTCTATGATTTTCACATATGCTTTAGATTATTAAGCATAAGTGAAAAAACATAATATTATTAGTTTGTGAGATCTCTCACCAAAAGAATTACAAAATTTAATTCTTATAAAGTGAGATGATTTTCATAGGTTTGGTTTAATTATTGTTTAACAATTCCATGCACCTTATATTGGTGTTATAGTGAATTTTGTTTTATTGATCGAGATTTCTCTCGTTAGAAATTCTCATTATAAGTACGTAATAAGAAAGTTTTATTTTGTTTTTGTTA</genome_strand>
        <mrna_strand>GCAAGTGATCCATATGGCTCAAGGTGCAGTTGATGGAGTGAAGAACACACCTTGAATTGGATCAGACAAAAAGTGAAAAAGAGAAAATGAAATTAATTAATTAATTAATTAATTAATTAACACATTTATCAATTTATATATCTCAATTTTAATTAATTTTTCATTTAATTCTATGATTTTCACATATGCTTTAGATTATTAAGCATAAGTGAAAAAACATAATATTATTAGTTTGTGAGATCTCTCACCAAAAGAATTACAAAATTTAATTCTTATAAAGTGAGATGATTTTCATAGGTTTGGTTTAATTATTGTTTAACAATTCCATGCACCTTATATTGGTGTTATAGTGAATTTTGTTTTATTGATCGAGATTTCTCTCGTTAGAAATTCTCATTATAAGTACGTAATAAGAAAGTTTTATTTTGTTTTTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E221372" ref_strand="+" ref_description="SGN-E221372 [cLEL-22-J6](-)">
      <seq>ccatatggctcaaggtgcagttgatggagtgaagaacacccttggaattggatcagacaaaaagtgaaaaagagaaaatgaaattaattaattaattaattaattaattaacacatttatcaatttatatatctcaattttaattaatttttcatttaattctatgattttcacatatgctttagattattaagcataagtgaaaaaacataatattattagtttgtgagatctctcaccaaaagaattacaaaatttaattcttataaagtgagatgattttcataggtttggtttaattattgtttaacaattccatgcaccttatattggtgttatagtgaattttgttttattgatcgagatttctctcgttagaaattctcattataagtacgtaataagaaagttttattttgtttttgttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="72225" stop="71197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71925" g_stop="71498" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="429" polyA_stop="445"/>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E221372" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71925" e_stop="71498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATATGGCTCAAGGTGCAGTTGATGGAGTGAAGAACACACTTGGAATTGGATCAGACAAAAAGTGAAAAAGAGAAAATGAAATTAATTAATTAATTAATTAATTAATTAACACATTTATCAATTTATATATCTCAATTTTAATTAATTTTTCATTTAATTCTATGATTTTCACATATGCTTTAGATTATTAAGCATAAGTGAAAAAACATAATATTATTAGTTTGTGAGATCTCTCACCAAAAGAATTACAAAATTTAATTCTTATAAAGTGAGATGATTTTCATAGGTTTGGTTTAATTATTGTTTAACAATTCCATGCACCTTATATTGGTGTTATAGTGAATTTTGTTTTATTGATCGAGATTTCTCTCGTTAGAAATTCTCATTATAAGTACGTAATAAGAAAGTTTTATTTTGTTTTTGTTA</genome_strand>
        <mrna_strand>CCATATGGCTCAAGGTGCAGTTGATGGAGTGAAGAACACCCTTGGAATTGGATCAGACAAAAAGTGAAAAAGAGAAAATGAAATTAATTAATTAATTAATTAATTAATTAACACATTTATCAATTTATATATCTCAATTTTAATTAATTTTTCATTTAATTCTATGATTTTCACATATGCTTTAGATTATTAAGCATAAGTGAAAAAACATAATATTATTAGTTTGTGAGATCTCTCACCAAAAGAATTACAAAATTTAATTCTTATAAAGTGAGATGATTTTCATAGGTTTGGTTTAATTATTGTTTAACAATTCCATGCACCTTATATTGGTGTTATAGTGAATTTTGTTTTATTGATCGAGATTTCTCTCGTTAGAAATTCTCATTATAAGTACGTAATAAGAAAGTTTTATTTTGTTTTTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E425363" ref_strand="+" ref_description="SGN-E425363 [STM-45-A1]">
      <seq>caaactttttttttactactgaattatgtatcatttcattaagacataatgtctaacttcgaaaaaatacacgatggacagttttacaaacatataagaagaacgataacgagctataagatcctcgtaacatgttgaaaaactccatgttagctaaaaggatcaaaattacagtactatttgacaaccatttgcttagtgcatgagggcagctgcagcttcttgcactaacggctgagttatatgcacgaaatgctctgcctccctctctacttgttcccggcatttgtttgcgtcttttccttctttcattttcttcacgaaggcaacgaatcgcctccagttatcaggatggaataggtcaggattcatcctcaaatatgtaaacgcgcacatctctctatcacctgattgatcgttgatattcaatgaggatgcttgaaggatctgttcatgtgcataatcatcgtatcgtggcaatgcattctccccagcaagtggaacttgagcttcctgagttgctaaagccacttgcctaaccaacttctcaggtgcacatagtgcatcttgtggctgctcgtggtcacgcatctcaacacatgtgaagttgaaaactgcaccgtggcgggcaagcatttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="+" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="73989" stop="75226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74282" g_stop="74926" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="641" r_length="641" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="+" ref_id="SGN-E425363" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E425363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74282" e_stop="74926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGGTGTATTTACTACTGAATTATGTATCATTTCATTAAGACATAATGTCTAGACTTTAAAAAAACTACACGATGAACAGTTTTACAAACATTTAAGAACAACGATAACGAGCTATAAGATCCAGGTAACATGTTGAAAAACTTCATGTTAGCTAAAAGGATCAAATTAAAACAGTACTATTTGACAACGATTTGCTTAGTGCATTAGGGCTACTGCAGCTTCTTGTACTAACGGCTGAGTTATATGAACGAAATGCTCTGCTTCCCTCTCTACCTGTTCGCGGCATTTGTTAGCGTCTTTTCCTTCTTTCATTTTCTTCACAAAGGCAACGAATCGTCTCCAGTTATCAGGATGGAATAAGTCAGGATTCATCCTCAAGTATGTAAACGCGCTCATCTCTCTATCACCTGATTGATCGTTGATGCTCAACGAGGACGCTTGAAGGATCTGTTCATGAGCATAATCATCGTATCGTGGCAATGCATTCTCCCCAGCAAGTGGAACTTGAGCTTCCTGAGTTGCTAACGCCACCTGCCTAACCAACTTCTCAGGTGCACATTGTGCATCTTGTGGCTGCTCGTGGTCACGCATTTCAACACATGTGAAGTTGAAAACTGCACCGTGGCGGGCAAGCATTTGGG</genome_strand>
        <mrna_strand>CAAACTTTTTTTTTACTACTGAATTATGTATCATTTCATTAAGACATAATGTCTA-ACTTCGAAAAAA-TACACGATGGACAGTTTTACAAACATATAAGAAGAACGATAACGAGCTATAAGATCCTCGTAACATGTTGAAAAACTCCATGTTAGCTAAAAGGATCAAA--ATTACAGTACTATTTGACAACCATTTGCTTAGTGCATGAGGGCAGCTGCAGCTTCTTGCACTAACGGCTGAGTTATATGCACGAAATGCTCTGCCTCCCTCTCTACTTGTTCCCGGCATTTGTTTGCGTCTTTTCCTTCTTTCATTTTCTTCACGAAGGCAACGAATCGCCTCCAGTTATCAGGATGGAATAGGTCAGGATTCATCCTCAAATATGTAAACGCGCACATCTCTCTATCACCTGATTGATCGTTGATATTCAATGAGGATGCTTGAAGGATCTGTTCATGTGCATAATCATCGTATCGTGGCAATGCATTCTCCCCAGCAAGTGGAACTTGAGCTTCCTGAGTTGCTAAAGCCACTTGCCTAACCAACTTCTCAGGTGCACATAGTGCATCTTGTGGCTGCTCGTGGTCACGCATCTCAACACATGTGAAGTTGAAAACTGCACCGTGGCGGGCAAGCATTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373487" ref_strand="+" ref_description="SGN-E373487 [TUS-31-B24]">
      <seq>ttaccttcccatcgcccaaatgcttgcccgccacggtgcagttttcaacttcacatgtgttgaaatgcgtgaccacgagcagccacaagatgcacaatgtgcacctgagaagttggttaggcaggtggcgttagcaactcaggaagctcaagttccacttgctggggagaatgcattgccacgatacgatgattatgctcatgaacagatccttcaagcgtcctcgttgagcatcaacgatcaatcaggtgatagagagatgagcgcgtttacatacttgaggatgaatcctgacttattccatcctgataactggagacgattcgttgcctttgtgaagaaaatgaaagaaggaaaagacgctaacaaatgccgcgaacaggtagagagggaagcagagcatttcgttcatataactcagccgttagtacaagaagctgcagtagccctaatgcactaagcaaatcgttgtcaaatagtactgttttaatttgatccttttagctaacatgaagtttttcaacatgttacctggatcttatagctcgttatcgttgttcttaaatgtttgtaaaactgttcatcgtgtagtttttttaaagctagacattatgtcttaatgaaatgatacataattcagtagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="75240" stop="73989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74940" g_stop="74286" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="654" r_length="654" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E373487" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74940" e_stop="74286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACTGTTTTAATTTGATCCTTTTAGCTAACATGAAGTTTTTCAACATGTTACCTGGATCTTATAGCTCGTTATCGTTGTTCTTAAATGTTTGTAAAACTGTTCATCGTGTAGTTTTTTTAAAGTCTAGACATTATGTCTTAATGAAATGATACATAATTCAGTAGTAAATACACCT</genome_strand>
        <mrna_strand>TTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACTGTTTTAATTTGATCCTTTTAGCTAACATGAAGTTTTTCAACATGTTACCTGGATCTTATAGCTCGTTATCGTTGTTCTTAAATGTTTGTAAAACTGTTCATCGTGTAGTTTTTTTAAAG-CTAGACATTATGTCTTAATGAAATGATACATAATTCAGTAGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734994" ref_strand="+" ref_description="SGN-E734994 [LB14AF01]">
      <seq>ccgtcacggtgcagttttcaacttcacatgtgttgaaatgcgtgaccacgagcagccacaagatgcacaatgtgcacctgagaagttggttaggcaggtggcgttagcaactcaggaagctcaagttccacttgctggggagaatgcattgccacgatacgatgattatgctcatgaacagatccttcaagcgtcctcgttgagcatcaacgatcaatcaggtgatagagagatgagcgcgtttacatacttgaggatgaatcctgacttattccatcctgataactggagacgattcgttgcctttgtgaagaaaatgaaagaaggaaaagacgctaacaaatgccgcgaacaggtagagagggaagcagagcatttcgttcatataactcagccgttagtacaagaagctgcagtagccctaatgcactaagcaaatcgttgtcaaatagtactgttttaatttgatccttttagctaacatgaagtttttcaacatgttacctggatcttatagctcgttatcgttgttcttaaatgtttgtaaaactgttcatcgtgtagtttttttaaagctagacattatgtcttaatgaaatgatacataattcagtagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="75213" stop="73989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74913" g_stop="74286" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="627" r_length="627" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E734994" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74913" e_stop="74286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACTGTTTTAATTTGATCCTTTTAGCTAACATGAAGTTTTTCAACATGTTACCTGGATCTTATAGCTCGTTATCGTTGTTCTTAAATGTTTGTAAAACTGTTCATCGTGTAGTTTTTTTAAAGTCTAGACATTATGTCTTAATGAAATGATACATAATTCAGTAGTAAATACACCT</genome_strand>
        <mrna_strand>CCGTCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACTGTTTTAATTTGATCCTTTTAGCTAACATGAAGTTTTTCAACATGTTACCTGGATCTTATAGCTCGTTATCGTTGTTCTTAAATGTTTGTAAAACTGTTCATCGTGTAGTTTTTTTAAAG-CTAGACATTATGTCTTAATGAAATGATACATAATTCAGTAGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735144" ref_strand="+" ref_description="SGN-E735144 [LB14CC03]">
      <seq>gtgaccacgagcagccacaagatgcacaatgtgcacctgagaagttggttaggcaggtggcgttagcaactcaggaagctcaagttccacttgctggggagaatgcattgccacgatacgatgattatgctcatgaacagatccttcaagcgtcctcgttgagcatcaacgatcaatcaggtgatagagagatgagcgcgtttacatacttgaggatgaatcctgacttattccatcctgataactggagacgattcgttgcctttgtgaagaaaatgaaagaaggaaaagacgctaacaaatgccgcgaacaggtagagagggaagcagagcatttcgttcatataactcagccgttagtacaagaagctgcagtagccctaatgcactaagcaaatcgttgtcaaatagtactgttttaatttgatccttttagctaacatgaagtttttcaacatgttacctggatcttatagctcgttatcgttgttcttaaatgtttgtaaaactgttcatcgtgtagtttttttaaagctagacattatgtcttaatgaaatgatacataattcagtagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="75172" stop="73989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74872" g_stop="74286" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E735144" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74872" e_stop="74286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACTGTTTTAATTTGATCCTTTTAGCTAACATGAAGTTTTTCAACATGTTACCTGGATCTTATAGCTCGTTATCGTTGTTCTTAAATGTTTGTAAAACTGTTCATCGTGTAGTTTTTTTAAAGTCTAGACATTATGTCTTAATGAAATGATACATAATTCAGTAGTAAATACACCT</genome_strand>
        <mrna_strand>GTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACTGTTTTAATTTGATCCTTTTAGCTAACATGAAGTTTTTCAACATGTTACCTGGATCTTATAGCTCGTTATCGTTGTTCTTAAATGTTTGTAAAACTGTTCATCGTGTAGTTTTTTTAAAG-CTAGACATTATGTCTTAATGAAATGATACATAATTCAGTAGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267741" ref_strand="+" ref_description="SGN-E267741 [cLEI-12-H7]">
      <seq>ttttttttttactactgaattatgtatcatttcattaagacataatgtctagctttaaaaaaactacacgatgaacagttttacaaacatttaagaacaacgataacgagctataagatccaggtaacatgttgaaaaacttcatgttagctaaaaggatcaaattaaaacagtactatttgacaacgatttgcttagtgcattagggctactgcagcttcttgtactaacggctgagttatatgaacgaaatgctctgcttccctctctacctgttcgcggcattagttagcgtcttttccttctttcattttcttcacaaaggcaacgaatcgtctccagttatcaggatggaataagtcaggattcatcctcaagtatgtaaacgcgctcatctctctatcacctgattgatcgttgatgctcaacgaggacgcttgaaggatctgttcatgagcataatcatcgtatcgtggcaatgcattctccccagcaagtggaacttgagcttcctgagttgctaacgccacctgcctaaccaacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="+" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="73989" stop="75132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74286" g_stop="74832" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="+" ref_id="SGN-E267741" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74286" e_stop="74832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTGTATTTACTACTGAATTATGTATCATTTCATTAAGACATAATGTCTAGACTTTAAAAAAACTACACGATGAACAGTTTTACAAACATTTAAGAACAACGATAACGAGCTATAAGATCCAGGTAACATGTTGAAAAACTTCATGTTAGCTAAAAGGATCAAATTAAAACAGTACTATTTGACAACGATTTGCTTAGTGCATTAGGGCTACTGCAGCTTCTTGTACTAACGGCTGAGTTATATGAACGAAATGCTCTGCTTCCCTCTCTACCTGTTCGCGGCATTTGTTAGCGTCTTTTCCTTCTTTCATTTTCTTCACAAAGGCAACGAATCGTCTCCAGTTATCAGGATGGAATAAGTCAGGATTCATCCTCAAGTATGTAAACGCGCTCATCTCTCTATCACCTGATTGATCGTTGATGCTCAACGAGGACGCTTGAAGGATCTGTTCATGAGCATAATCATCGTATCGTGGCAATGCATTCTCCCCAGCAAGTGGAACTTGAGCTTCCTGAGTTGCTAACGCCACCTGCCTAACCAACTTC</genome_strand>
        <mrna_strand>TTTTTTTTTTACTACTGAATTATGTATCATTTCATTAAGACATAATGTCTAG-CTTTAAAAAAACTACACGATGAACAGTTTTACAAACATTTAAGAACAACGATAACGAGCTATAAGATCCAGGTAACATGTTGAAAAACTTCATGTTAGCTAAAAGGATCAAATTAAAACAGTACTATTTGACAACGATTTGCTTAGTGCATTAGGGCTACTGCAGCTTCTTGTACTAACGGCTGAGTTATATGAACGAAATGCTCTGCTTCCCTCTCTACCTGTTCGCGGCATTAGTTAGCGTCTTTTCCTTCTTTCATTTTCTTCACAAAGGCAACGAATCGTCTCCAGTTATCAGGATGGAATAAGTCAGGATTCATCCTCAAGTATGTAAACGCGCTCATCTCTCTATCACCTGATTGATCGTTGATGCTCAACGAGGACGCTTGAAGGATCTGTTCATGAGCATAATCATCGTATCGTGGCAATGCATTCTCCCCAGCAAGTGGAACTTGAGCTTCCTGAGTTGCTAACGCCACCTGCCTAACCAACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E613575" ref_strand="+" ref_description="SGN-E613575 [63352]">
      <seq>gatcaatcaggtgatagagagatgtgcgcgtttacatatttgaggatgaatcctgacctattccatcctgataactggaggcgattcgttgccttcgtgaagaaaatgaaagaaggaaaagacgcaaacaaatgccgggaacaagtagagagggaggcagagcatttcgtgcatataactcagccgttagtgcaagaagctgcagctgccctcatgcactaagcaaatggttgtcaaatagtactgtaattttgatccttttagctaacatggagtttttcaacatgttacgaggatcttatagctcgttatcgttcttcttatatgtttgtaaaactgtccatcgtgtattttttcgaagttagacattatgtcttaatgaaatgatacataattcagtagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="75002" stop="73989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74702" g_stop="74286" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E613575" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E613575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74702" e_stop="74286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACTGTTTTAATTTGATCCTTTTAGCTAACATGAAGTTTTTCAACATGTTACCTGGATCTTATAGCTCGTTATCGTTGTTCTTAAATGTTTGTAAAACTGTTCATCGTGTAGTTTTTTTAAAGTCTAGACATTATGTCTTAATGAAATGATACATAATTCAGTAGTAAATACACCT</genome_strand>
        <mrna_strand>GATCAATCAGGTGATAGAGAGATGTGCGCGTTTACATATTTGAGGATGAATCCTGACCTATTCCATCCTGATAACTGGAGGCGATTCGTTGCCTTCGTGAAGAAAATGAAAGAAGGAAAAGACGCAAACAAATGCCGGGAACAAGTAGAGAGGGAGGCAGAGCATTTCGTGCATATAACTCAGCCGTTAGTGCAAGAAGCTGCAGCTGCCCTCATGCACTAAGCAAATGGTTGTCAAATAGTACTG--TAATTTTGATCCTTTTAGCTAACATGGAGTTTTTCAACATGTTACGAGGATCTTATAGCTCGTTATCGTTCTTCTTATATGTTTGTAAAACTGTCCATCGTGTA-TTTTTTCGAAGT-TAGACATTATGTCTTAATGAAATGATACATAATTCAGTAGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E620265" ref_strand="+" ref_description="SGN-E620265 [70964]">
      <seq>ttcgtgaagaaaatgaaagaaggaaaagacgcaaacaaatgccgggaacaagtagagagggaggcagagcatttcgtgcatataactcagccgttagtgcaagaagctgcagctgccctcatgcactaagcaaatggttgtcaaatagtactgtaattttgatccttttagctaacatggagtttttcaacatgttacgaggatcttatagctcgttatcgttcttcttatatgtttgtaaaactgtccatcgtgtattttttcgaagttagacattatgtcttaatgaaatgatacataattcagtagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="74909" stop="73989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74609" g_stop="74286" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E620265" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E620265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74609" e_stop="74286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACTGTTTTAATTTGATCCTTTTAGCTAACATGAAGTTTTTCAACATGTTACCTGGATCTTATAGCTCGTTATCGTTGTTCTTAAATGTTTGTAAAACTGTTCATCGTGTAGTTTTTTTAAAGTCTAGACATTATGTCTTAATGAAATGATACATAATTCAGTAGTAAATACACCT</genome_strand>
        <mrna_strand>TTCGTGAAGAAAATGAAAGAAGGAAAAGACGCAAACAAATGCCGGGAACAAGTAGAGAGGGAGGCAGAGCATTTCGTGCATATAACTCAGCCGTTAGTGCAAGAAGCTGCAGCTGCCCTCATGCACTAAGCAAATGGTTGTCAAATAGTACTG--TAATTTTGATCCTTTTAGCTAACATGGAGTTTTTCAACATGTTACGAGGATCTTATAGCTCGTTATCGTTCTTCTTATATGTTTGTAAAACTGTCCATCGTGTA-TTTTTTCGAAGT-TAGACATTATGTCTTAATGAAATGATACATAATTCAGTAGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373486" ref_strand="+" ref_description="SGN-E373486 [TUS-31-B24](-)">
      <seq>gttaccttcccatcgcccaaatgcttgcccgccacggtgcagttttcaacttcacatgtgttgaaatgcgtgaccacgagcagccacaagatgcacaatgtgcacctgagaagttggttaggcaggtggcgttagcaactcaggaagctcaagttccacttgctggggagaatgcattgccacgatacgatgattatgctcatgaacagatccttcaagcgtcctcgttgagcatcaacgatcaatcaggtgatagagagatgagcgcgtttacatacttgaggatgaatcctgacttattccatcctgataactggagacgattcgttgcctttgtgaagaaaatgaaagaaggaaaagacgctaacaaatgccgcgaacaggtagagagggaagcagagcatttcgttcatataactcagccgttagtacaagaagctgcagtagccctaatgcactaagcaaatcgttgtcaaatagtactgttttaatttgatccttttagctaacatgaagtttttcaacatgttacctggatcttatagctcgttatcgttgttcttaaatgtttgtaaaactgttcatcgtgtagtttttttaaagctagacattatgtcttaatgaaatgatacataattcagtagtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="75241" stop="73989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74941" g_stop="74287" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="654" r_length="654" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E373486" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74941" e_stop="74287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACTGTTTTAATTTGATCCTTTTAGCTAACATGAAGTTTTTCAACATGTTACCTGGATCTTATAGCTCGTTATCGTTGTTCTTAAATGTTTGTAAAACTGTTCATCGTGTAGTTTTTTTAAAGTCTAGACATTATGTCTTAATGAAATGATACATAATTCAGTAGTAAATACACC</genome_strand>
        <mrna_strand>GTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACTGTTTTAATTTGATCCTTTTAGCTAACATGAAGTTTTTCAACATGTTACCTGGATCTTATAGCTCGTTATCGTTGTTCTTAAATGTTTGTAAAACTGTTCATCGTGTAGTTTTTTTAAAG-CTAGACATTATGTCTTAATGAAATGATACATAATTCAGTAGTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733357" ref_strand="+" ref_description="SGN-E733357 [LB04CF06]">
      <seq>cctgtccaaccgatgctggtgagtacaacaattggccagaagatacaaactttttcaagaaggaaggtggtggatgggatagtcaatacggggagttcttcctcacttggtattctcaaatgcttttgaaccatggcgagaggatactgcaatcatccaaggcgatattcgaggacaaaggtgtgaagatttcagttaagattgcaggtatccactggcactatggaacaaggtcccatgcccctgagttgactgctggatactacaacactcgtaaccgagatggttaccttcccatcgcccaaatgcttgcccgccacggtgcagttttcaacttcacatgtgttgaaatgcgtgaccacgagcagccacaagatgcacaatgtgcacctgagaagttggttaggcaggtggcgttagcaactcaggaagctcaagttccacttgctggggagaatgcattgccacgatacgatgattatgctcatgaacagatccttcaagcgtcctcgttgagcatcaacgatcaatcaggtgatagagagatgagcgcgtttacatacttgaggatgaatcctgacttattccatcctgataactggagacgattcgttgcctttgtgaagaaaatgaaagaaggaaaagacgctaacaaatgccgcgaacaggtagagagggaagcagagcatttcgttcatataactcagccgttagtacaagaagctgcagtagccctaatgcactaagcaaatcgttgtcaaatagtactgttttaatttgatccttttagctaacatgaagtttttcaacatgttacctggatcttatagctcgttatcgttgtttctaaatgtttgtaaaactgttcatcgtgtagtttttttaagctagacataatgtctttatgaaatgatacatatttcagtagtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="75526" stop="73989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75226" g_stop="74294" g_length="933"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="931" r_length="931" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="932" polyA_stop="942"/>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E733357" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>933</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75226" e_stop="74294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGTCCAACCGATGCTGGTGAGTACAACAATTGGCCAGAAGATACAAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATACGGGGAGTTCTTCCTCACTTGGTATTCTCAAATGCTTTTGAACCATGGCGAGAGGATACTGCAATCATCCAAGGCGATATTCGAGGACAAAGGTGTGAAGATTTCAGTTAAGATTGCAGGTATCCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGTTGACTGCTGGATACTACAACACTCGTAACCGAGATGGTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACTGTTTTAATTTGATCCTTTTAGCTAACATGAAGTTTTTCAACATGTTACCTGGATCTTATAGCTCGTTATCGTTGTTCTTAAATGTTTGTAAAACTGTTCATCGTGTAGTTTTTTTAAAGTCTAGACATTATGTCTTAATGAAATGATACATAATTCAGTAGTAA</genome_strand>
        <mrna_strand>CCTGTCCAACCGATGCTGGTGAGTACAACAATTGGCCAGAAGATACAAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATACGGGGAGTTCTTCCTCACTTGGTATTCTCAAATGCTTTTGAACCATGGCGAGAGGATACTGCAATCATCCAAGGCGATATTCGAGGACAAAGGTGTGAAGATTTCAGTTAAGATTGCAGGTATCCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGTTGACTGCTGGATACTACAACACTCGTAACCGAGATGGTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACTGTTTTAATTTGATCCTTTTAGCTAACATGAAGTTTTTCAACATGTTACCTGGATCTTATAGCTCGTTATCGTTGTTTCTAAATGTTTGTAAAACTGTTCATCGTGTAGTTTTTTT-AAG-CTAGACATAATGTCTTTATGAAATGATACATATTTCAGTAGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733001" ref_strand="+" ref_description="SGN-E733001 [LB03CH02]">
      <seq>cgcataggtgtgaagatttcagttaagattgcaggtatccactggcactatggaacaaggtcccatgcccctgagttgactgctggatactacaacactcgtaaccgagatggttaccttcccatcgcccaaatgcttgcccgccacggtgcagttttcaacttcacatgtgttgaaatgcgtgaccacgagcagccacaagatgcacaatgtgcacctgagaagttggttaggcaggtggcgttagcaactcaggaagctcaagttccacttgctggggagaatgcattgccacgatacgatgattatgctcatgaacagatccttcaagcgtcctcgttgagcatcaacgatcaatcaggtgatagagagatgagcgcgtttacatacttgaggatgaatcctgacttattccatcctgataactggagacgattcgttgcctttgtgaagaaaatgaaagaaggaaaagacgctaacaaatgccgcgaacaggtagagagggaagcagagcatttcgttcatataactcagccgttagtacaagaagctgcagtagccctaatgcactaagcaaatcgttgtcaaatagtactgttttaatttgatccttttagctaacatgaagtttttcaacatgttacctggatcttatagctcgttatcgttgttcttaaatgtttgtaaaactgttcatcgtgtagtttttttaaagctagacattatgtcttaatgaaatgatacataattcagtagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="75351" stop="73996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75053" g_stop="74296" g_length="758"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="757" r_length="757" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E733001" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75053" e_stop="74296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAAAGGTGTGAAGATTTCAGTTAAGATTGCAGGTATCCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGTTGACTGCTGGATACTACAACACTCGTAACCGAGATGGTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACTGTTTTAATTTGATCCTTTTAGCTAACATGAAGTTTTTCAACATGTTACCTGGATCTTATAGCTCGTTATCGTTGTTCTTAAATGTTTGTAAAACTGTTCATCGTGTAGTTTTTTTAAAGTCTAGACATTATGTCTTAATGAAATGATACATAATTCAGTAGT</genome_strand>
        <mrna_strand>CGCATAGGTGTGAAGATTTCAGTTAAGATTGCAGGTATCCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGTTGACTGCTGGATACTACAACACTCGTAACCGAGATGGTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACTGTTTTAATTTGATCCTTTTAGCTAACATGAAGTTTTTCAACATGTTACCTGGATCTTATAGCTCGTTATCGTTGTTCTTAAATGTTTGTAAAACTGTTCATCGTGTAGTTTTTTTAAAG-CTAGACATTATGTCTTAATGAAATGATACATAATTCAGTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E599539" ref_strand="+" ref_description="SGN-E599539 [52529]">
      <seq>gttttaccttcatattgatactacgtgacattatgtatcatttcattaagacataatgtctaacttcgaaaaaatacacggacagttttacaaacatataagaagaacgataacgagctataagatcctcgtaacatgttgaaaaactccatgttagctaaaaggatcaaaattacagtactatttgacaaccatttgcttagtgcatgagggcagctgcagcttcttgcactaacggctgagttatatgcacgaaatgctctgcctccctctctacttgttcccggcatttgtttgcgtcttttccttctttcattttcttcacaaaggcaacgaatcgcctccagttatcaggatggaataggtcaggattcatcctcaaatatgtaaacgcgcacatctctctatcacctgattgatcgttgatattcaatgaggatgcttgaaggatctgttcatgtgcataatcatcgtatcgtggcaatgcattctccccagcaagtggaacttgagcttcctgagttgctaatgccacttgcctaaccaacttctcaggtgcacatagtgcatcttgtggctgctcgtggtcacgcatctcaacacatgtgaagttgaaaactgcaccgtggcgggcaagcatttgggcgatgggaaggtaaccatctcggttacgggtgttgtagtatccagcggtcagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="+" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="73995" stop="75281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74304" g_stop="74981" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="700" r_length="671" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="+" ref_id="SGN-E599539" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E599539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74304" e_stop="74981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATGTATCATTTCATTAAGACATAATGTCTAGACTTTAAAAAAACTACACGATGAACAGTTTTACAAACATTTAAGAACAACGATAACGAGCTATAAGATCCAGGTAACATGTTGAAAAACTTCATGTTAGCTAAAAGGATCAAATTAAAACAGTACTATTTGACAACGATTTGCTTAGTGCATTAGGGCTACTGCAGCTTCTTGTACTAACGGCTGAGTTATATGAACGAAATGCTCTGCTTCCCTCTCTACCTGTTCGCGGCATTTGTTAGCGTCTTTTCCTTCTTTCATTTTCTTCACAAAGGCAACGAATCGTCTCCAGTTATCAGGATGGAATAAGTCAGGATTCATCCTCAAGTATGTAAACGCGCTCATCTCTCTATCACCTGATTGATCGTTGATGCTCAACGAGGACGCTTGAAGGATCTGTTCATGAGCATAATCATCGTATCGTGGCAATGCATTCTCCCCAGCAAGTGGAACTTGAGCTTCCTGAGTTGCTAACGCCACCTGCCTAACCAACTTCTCAGGTGCACATTGTGCATCTTGTGGCTGCTCGTGGTCACGCATTTCAACACATGTGAAGTTGAAAACTGCACCGTGGCGGGCAAGCATTTGGGCGATGGGAAGGTAACCATCTCGGTTACGAGTGTTGTAGTATCCAGCAGTCAACTC</genome_strand>
        <mrna_strand>ATTATGTATCATTTCATTAAGACATAATGTCTA-ACTTCGAAAAAA-TACACG--G-ACAGTTTTACAAACATATAAGAAGAACGATAACGAGCTATAAGATCCTCGTAACATGTTGAAAAACTCCATGTTAGCTAAAAGGATCAAA--ATTACAGTACTATTTGACAACCATTTGCTTAGTGCATGAGGGCAGCTGCAGCTTCTTGCACTAACGGCTGAGTTATATGCACGAAATGCTCTGCCTCCCTCTCTACTTGTTCCCGGCATTTGTTTGCGTCTTTTCCTTCTTTCATTTTCTTCACAAAGGCAACGAATCGCCTCCAGTTATCAGGATGGAATAGGTCAGGATTCATCCTCAAATATGTAAACGCGCACATCTCTCTATCACCTGATTGATCGTTGATATTCAATGAGGATGCTTGAAGGATCTGTTCATGTGCATAATCATCGTATCGTGGCAATGCATTCTCCCCAGCAAGTGGAACTTGAGCTTCCTGAGTTGCTAATGCCACTTGCCTAACCAACTTCTCAGGTGCACATAGTGCATCTTGTGGCTGCTCGTGGTCACGCATCTCAACACATGTGAAGTTGAAAACTGCACCGTGGCGGGCAAGCATTTGGGCGATGGGAAGGTAACCATCTCGGTTACGGGTGTTGTAGTATCCAGCGGTCAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E590634" ref_strand="+" ref_description="SGN-E590634 [44234]">
      <seq>gtatcatttcattaagacataatgtctaacttcgaaaaaatacacgatggacagttttacaaacatataagaagaacgataacgagctataagatcctcgtaacatgttgaaaaactccatgttagctaaaaggatcaaaattacagtactatttgacaaccatttgcttagtgcatgagggcagctgcagcttcttgcactaacggctgagttatatgcacgaaatgctctgcctccctctctacttgttcccggcatgtgtttgcgtcttttccttctttcattttcttcaccgaaggcaacgaatcgcctccagttatcaggatggaataggtcaggattcatcctcaaatatgtaaacgcgcacatctctctatcacctgattgatcgttgatattcaatgaggatgcttgaaggatctgttcatgtgcataatcatcgtatcgtggcaatgcattctccccagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="+" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="74009" stop="75081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74309" g_stop="74781" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="+" ref_id="SGN-E590634" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E590634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74309" e_stop="74781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATCATTTCATTAAGACATAATGTCTAGACTTTAAAAAAACTACACGATGAACAGTTTTACAAACATTTAAGAACAACGATAACGAGCTATAAGATCCAGGTAACATGTTGAAAAACTTCATGTTAGCTAAAAGGATCAAATTAAAACAGTACTATTTGACAACGATTTGCTTAGTGCATTAGGGCTACTGCAGCTTCTTGTACTAACGGCTGAGTTATATGAACGAAATGCTCTGCTTCCCTCTCTACCTGTTCGCGGCATTTGTTAGCGTCTTTTCCTTCTTTCATTTTCTTCA-CAAAGGCAACGAATCGTCTCCAGTTATCAGGATGGAATAAGTCAGGATTCATCCTCAAGTATGTAAACGCGCTCATCTCTCTATCACCTGATTGATCGTTGATGCTCAACGAGGACGCTTGAAGGATCTGTTCATGAGCATAATCATCGTATCGTGGCAATGCATTCTCCCCAGCA</genome_strand>
        <mrna_strand>GTATCATTTCATTAAGACATAATGTCTA-ACTTCGAAAAAA-TACACGATGGACAGTTTTACAAACATATAAGAAGAACGATAACGAGCTATAAGATCCTCGTAACATGTTGAAAAACTCCATGTTAGCTAAAAGGATCAAA--ATTACAGTACTATTTGACAACCATTTGCTTAGTGCATGAGGGCAGCTGCAGCTTCTTGCACTAACGGCTGAGTTATATGCACGAAATGCTCTGCCTCCCTCTCTACTTGTTCCCGGCATGTGTTTGCGTCTTTTCCTTCTTTCATTTTCTTCACCGAAGGCAACGAATCGCCTCCAGTTATCAGGATGGAATAGGTCAGGATTCATCCTCAAATATGTAAACGCGCACATCTCTCTATCACCTGATTGATCGTTGATATTCAATGAGGATGCTTGAAGGATCTGTTCATGTGCATAATCATCGTATCGTGGCAATGCATTCTCCCCAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576182" ref_strand="+" ref_description="SGN-E576182 [59360]">
      <seq>ctgagctgaccgctggatactacaacacccgtaaccgagatggttaccttcccatcgcccaaatgcttgcccgccacggtgcagttttcaacttcacatgtgttgagatgcgtgaccacgagcagccacaagatgcactatgtgcacctgagaagttggttaggcaagtggctttagcaactcaggaagctcaagttccacttgctggggagaatgcattgccacgatacgatgattatgcacatgaacagatccttcaagcatcctcattgaatatcaacgatcaatcaggtgatagagagatgtgcgcgtttacatatttgaggatgaatcctgacctattccatcctgataactggaggcgattcgttgccttcgtgaagaaaatgaaagaaggaaaagacgcaaacaaatgccgggaacaagtagagagggaggcagagcatttcgtgcatataactcagccgttagtgcaagaagctgcagctgccctcatgcactaagcaaatggttgtcaaatagtactgtaattttgatccttttagctaacatggagtttttcaacatgttacgaggatcttatagctcgttatcgttcttcttatatgtttgtaaaactgtccatcgtgtattttttcgaagttagacattatgtcttaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="75283" stop="74017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74983" g_stop="74317" g_length="667"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="663" r_length="663" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E576182" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E576182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74983" e_stop="74317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGTTGACTGCTGGATACTACAACACTCGTAACCGAGATGGTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACTGTTTTAATTTGATCCTTTTAGCTAACATGAAGTTTTTCAACATGTTACCTGGATCTTATAGCTCGTTATCGTTGTTCTTAAATGTTTGTAAAACTGTTCATCGTGTAGTTTTTTTAAAGTCTAGACATTATGTCTTAATGA</genome_strand>
        <mrna_strand>CTGAGCTGACCGCTGGATACTACAACACCCGTAACCGAGATGGTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAGATGCGTGACCACGAGCAGCCACAAGATGCACTATGTGCACCTGAGAAGTTGGTTAGGCAAGTGGCTTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCACATGAACAGATCCTTCAAGCATCCTCATTGAATATCAACGATCAATCAGGTGATAGAGAGATGTGCGCGTTTACATATTTGAGGATGAATCCTGACCTATTCCATCCTGATAACTGGAGGCGATTCGTTGCCTTCGTGAAGAAAATGAAAGAAGGAAAAGACGCAAACAAATGCCGGGAACAAGTAGAGAGGGAGGCAGAGCATTTCGTGCATATAACTCAGCCGTTAGTGCAAGAAGCTGCAGCTGCCCTCATGCACTAAGCAAATGGTTGTCAAATAGTACTG--TAATTTTGATCCTTTTAGCTAACATGGAGTTTTTCAACATGTTACGAGGATCTTATAGCTCGTTATCGTTCTTCTTATATGTTTGTAAAACTGTCCATCGTGTA-TTTTTTCGAAGT-TAGACATTATGTCTTAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212170" ref_strand="+" ref_description="SGN-E212170 [cLEC-75-J24]">
      <seq>atcgcccaaatgcttgcccgccacggtgcagttttcaacttcacatgtgttgaaatgcgtgaccacgagcagccacaagatgcacaatgtgcacctgagaagttggttaggcaggtggcgttagcaactcaggaagctcaagttccacttgctggggagaatgcattgccacgatacgatgattatgctcatgaacagatccttcaagcgtcctcgttgagcatcaacgatcaatcaggtgatagagagatgagcgcgtttacatacttgaggatgaatcctgacttattccatcctgataactggagacgattcgttgcctttgtgaagaaaatgaaagaaggaaaagacgctaacaaatgccgcgaacaggtagagagggaagcagagcatttcgttcatataactcagccgttagtacaagaagctgcagtagccctaatgcactaagcaaatcgttgtcaaatagtactgttttaatttgatccttttagctaacatgaagtttttcaacatgttacctggatcttatagctcgttatcgttgttcttaaatgtttgtaaaactgttcatcgtgtagtttttttaaagctaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="75230" stop="74031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74930" g_stop="74340" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="591" r_length="591" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="595" polyA_stop="609"/>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E212170" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74930" e_stop="74340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACTGTTTTAATTTGATCCTTTTAGCTAACATGAAGTTTTTCAACATGTTACCTGGATCTTATAGCTCGTTATCGTTGTTCTTAAATGTTTGTAAAACTGTTCATCGTGTAGTTTTTTTAAA</genome_strand>
        <mrna_strand>ATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACTGTTTTAATTTGATCCTTTTAGCTAACATGAAGTTTTTCAACATGTTACCTGGATCTTATAGCTCGTTATCGTTGTTCTTAAATGTTTGTAAAACTGTTCATCGTGTAGTTTTTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289353" ref_strand="+" ref_description="SGN-E289353 [cLES-18-L20]">
      <seq>ttaccttcccatcgcccaaatgcttgcccgccacggtgcagttttcaacttcacatgtgttgaaatgcgtgaccacgagcagccacaagatgcacaatgtgcacctgagaagttggttaggcaggtggcgttagcaactcaggaagctcaagttccacttgctggggagaatgcattgccacgatacgatgattatgctcatgaacagatccttcaagcgtcctcgttgagcatcaacgatcaatcaggtgatagagagatgagcgcgtttacatacttgaggatgaatcctgacttattccatcctgataactggagacgattcgttgcctttgtgaagaaaatgaaagaaggaaaagacgctaacaaatgccgcgaacaggtagagagggaagcagagcatttcgttcatataactcagccgttagtacaagaagctgcagtagccctaatgcactaagcaaatcgttgtcaaatagtactggtttaatttgatccttttagctaacatgaagtttttcaacatgttacctggatcttatagctcgttatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="75240" stop="74087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74940" g_stop="74387" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E289353" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289353" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74940" e_stop="74387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACTGTTTTAATTTGATCCTTTTAGCTAACATGAAGTTTTTCAACATGTTACCTGGATCTTATAGCTCGTTATCG</genome_strand>
        <mrna_strand>TTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACTGGTTTAATTTGATCCTTTTAGCTAACATGAAGTTTTTCAACATGTTACCTGGATCTTATAGCTCGTTATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454963" ref_strand="+" ref_description="SGN-E454963 [cSTS-24-L18]">
      <seq>ctttttcaagaaggaaggtggtggatgggatagtcaatatggggagttcttcctcacttggtattctgagatgcttttgaaccatggtgagaggatactgcaatcagccaaggcgatattcgaggacaagggtgttaagatttcagttaagattgcaggtattcactggcactatggaacaaggtcccatgcccctgagctgaccgctggatactacaacacccgtaaccgagatggttaccttcccatcgcccagatgcttgcccgccacggtgcagttttcaacttcacatgtgttgagatgcgtgaccacgagcagccacaagatgcccaatgtgcacctgagaagttggttaggcaagtggcattagcaactcaggaagctcaagttccacttgctggggagaatgcattgccacgatacgatgattatgcacatgaacagatccttcaagcatcctcattgaatatcaacgatcaatcaggtgatagagagatgtgcgcgtttacatatttgaggatgaatcctgacctattccatcctgataactggagacgattcgttgcctttgtgaagaaaatgaaagaaggataagacgctaacaaatgccgggaacaagtagagagggaggcagagcatttcgtgcatataactcagccgttagtgcaagaagctgcagcagccctcatgcactaagcaaatggttgtcaaatagtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="75477" stop="74158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75177" g_stop="74458" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E454963" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E454963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75177" e_stop="74458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATACGGGGAGTTCTTCCTCACTTGGTATTCTCAAATGCTTTTGAACCATGGCGAGAGGATACTGCAATCATCCAAGGCGATATTCGAGGACAAAGGTGTGAAGATTTCAGTTAAGATTGCAGGTATCCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGTTGACTGCTGGATACTACAACACTCGTAACCGAGATGGTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACT</genome_strand>
        <mrna_strand>CTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATATGGGGAGTTCTTCCTCACTTGGTATTCTGAGATGCTTTTGAACCATGGTGAGAGGATACTGCAATCAGCCAAGGCGATATTCGAGGACAAGGGTGTTAAGATTTCAGTTAAGATTGCAGGTATTCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGCTGACCGCTGGATACTACAACACCCGTAACCGAGATGGTTACCTTCCCATCGCCCAGATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAGATGCGTGACCACGAGCAGCCACAAGATGCCCAATGTGCACCTGAGAAGTTGGTTAGGCAAGTGGCATTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCACATGAACAGATCCTTCAAGCATCCTCATTGAATATCAACGATCAATCAGGTGATAGAGAGATGTGCGCGTTTACATATTTGAGGATGAATCCTGACCTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGATAAGACGCTAACAAATGCCGGGAACAAGTAGAGAGGGAGGCAGAGCATTTCGTGCATATAACTCAGCCGTTAGTGCAAGAAGCTGCAGCAGCCCTCATGCACTAAGCAAATGGTTGTCAAATAGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727943" ref_strand="+" ref_description="SGN-E727943 [LA16AH05]">
      <seq>agcttatagggtgcagcggaagcatttggtaagcctgaatggggacacaccggtccaaccgatgctggtgagtacaacaattggccagaagatacaaactttttcaagaaggaaggtggtggatgggatagtcaatacggggagttcttcctcacttggtattctcaaatgcttttgaaccatggcgagaggatactgcaatcatccaaggcgatattcgaggacaaaggtgtgaagatttcagttaagattgcaggtatccactggcactatggaacaaggtcccatgcccctgagttgactgctggatactacaacactcgtaaccgagatggttaccttcccatcgcccaaatgcttgcccgccacggtgcagttttcaacttcacatgtgttgaaatgcgtgaccacgagcagccacaagatgcacaatgtgcacctgagaagttggttaggcaggtggcgttagcaactcaggaagctcaagttccacttgctggggagaatgcattgccacgatacgatgattatgctcatgaacagatccttcaagcgtcctcgttgagcatcaacgatcaatcaggtgatagagagatgagcgcgtttacatacttgaggatgaatcctgacttattccatcctgataactggagacgattcgttgcctttgtgaagaanatgaaagaaggaaaagacgctaacaaatgccgcgaacaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="75575" stop="74257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75275" g_stop="74557" g_length="719"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="719" r_length="719" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E727943" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75275" e_stop="74557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTACAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTGAGTACAACAATTGGCCAGAAGATACAAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATACGGGGAGTTCTTCCTCACTTGGTATTCTCAAATGCTTTTGAACCATGGCGAGAGGATACTGCAATCATCCAAGGCGATATTCGAGGACAAAGGTGTGAAGATTTCAGTTAAGATTGCAGGTATCCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGTTGACTGCTGGATACTACAACACTCGTAACCGAGATGGTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGT</genome_strand>
        <mrna_strand>AGCTTATAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTGAGTACAACAATTGGCCAGAAGATACAAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATACGGGGAGTTCTTCCTCACTTGGTATTCTCAAATGCTTTTGAACCATGGCGAGAGGATACTGCAATCATCCAAGGCGATATTCGAGGACAAAGGTGTGAAGATTTCAGTTAAGATTGCAGGTATCCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGTTGACTGCTGGATACTACAACACTCGTAACCGAGATGGTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAANATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729511" ref_strand="+" ref_description="SGN-E729511 [LA21BB08]">
      <seq>gacgtgtgatataggaaattcaagtcgggatgggtccagctggtgagctccgttatccatcctatcccgaaaaagatggaatatggaagttccctggaatcggtgcttttcagtgttatgataagtacatgatcggtagcttacagggtgcagcggaagcatttggtaagcctgaatggggacacaccggtccaaccgatgctggtgagtacaacaattggccagaagatacaaactttttcaagaaggaaggtggtggatgggatagtcaatacggggagttcttcctcacttggtattctcaaatgcttttgaaccatggcgagaggatactgcaatcatccaaggcgatattcgaggacaaaggtgtgaagatttcagttaagattgcaggtatccactggcactatggaacaaggtcccatgcccctgagttgactgctggatactacaacactcgtaaccgagatggttaccttcccatcgcccaaatgcttgcccgccacggtgcagttttcaacttcacatgtgttgaaatgcgtgaccacgagcagccacaagatgcacaatgtgcacctgagaagttggttaggcaggtggcgttagcaactcaggaagctcaagttccacttgctggggagaatgcattgccacgatacgatgattatgctcatgaacagatccttcaagcgtcctcgttgagcatcaacgatcaatcaggtgatagagagatgagcgcgtttacatacttgaggatgaatcctgacttattccatcctngatactggagacgattcgttgcctttgtgaagaaaatgaaagaaggaaaagacgctaacaaatgccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="75811" stop="74266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75511" g_stop="75387" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75386" i_stop="75288" i_length="99">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75287" g_stop="74566" g_length="722"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="847" r_length="722" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E729511" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>847</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75511" e_stop="75387"/>
          <exon e_start="75287" e_stop="74566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGTGTGATATAGGAAATTCAAGTCGGGATGGGTCCAGCTGGTGAGCTCCGTTATCCATCCTATCCCGAAAAAGATGGAATATGGAAGTTCCCTGGAATCGGTGCTTTTCAGTGTTATGATAAGGTATAAAGCAAGTTCTGTTTTCTATGGTGTGTTTTAGTGTTTAACGTCGTCATTATTACTGATGATTTGTTCTGTTAAATGTATTGTATCGCGTTGCAGTACATGATCGGTAGCTTACAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTGAGTACAACAATTGGCCAGAAGATACAAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATACGGGGAGTTCTTCCTCACTTGGTATTCTCAAATGCTTTTGAACCATGGCGAGAGGATACTGCAATCATCCAAGGCGATATTCGAGGACAAAGGTGTGAAGATTTCAGTTAAGATTGCAGGTATCCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGTTGACTGCTGGATACTACAACACTCGTAACCGAGATGGTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCG</genome_strand>
        <mrna_strand>GACGTGTGATATAGGAAATTCAAGTCGGGATGGGTCCAGCTGGTGAGCTCCGTTATCCATCCTATCCCGAAAAAGATGGAATATGGAAGTTCCCTGGAATCGGTGCTTTTCAGTGTTATGATAAG...................................................................................................TACATGATCGGTAGCTTACAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTGAGTACAACAATTGGCCAGAAGATACAAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATACGGGGAGTTCTTCCTCACTTGGTATTCTCAAATGCTTTTGAACCATGGCGAGAGGATACTGCAATCATCCAAGGCGATATTCGAGGACAAAGGTGTGAAGATTTCAGTTAAGATTGCAGGTATCCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGTTGACTGCTGGATACTACAACACTCGTAACCGAGATGGTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTNGATACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729504" ref_strand="+" ref_description="SGN-E729504 [LA21BB01]">
      <seq>cctattctgatttcatgagagggtttagagatagatttgagaatctcttaggtgataccattgtggaaattcaagtcgggatgggtccagctggtgagctccgttatccatcctatcccgaaaaagatggaatatggaagttccctggaatcggtgcttttcagtgttatgataagtacatgatcggtagcttacagggtgcagcggaagcatttggtaagcctgaatggggacacaccggtccaaccgatgctggtgagtacaacaattggccagaagatacaaactttttcaagaaggaaggtggtggatgggatagtcaatacggggagttcttcctcacttggtattctcaaatgcttttgaaccatggcgagaggatactgcaatcatccaaggcgatattcgaggacaaaggtgtgaagatttcagttaagattgcaggtatccactggcactatggaacaaggtcccatgcccctgagttgactgctggatactacaacactcgtaaccgagatggttaccttcccatcgcccaaatgcttgcccgccacggtgcagttttcaacttcacatgtgttgaaatgcgtgaccacgagcagccacaagatgcacaatgtgcacctgagaagttggttaggcaggtggcgttagcaactcaggaagctcaagttccacttgctggggagaatgcattgccacgatacgatgattatgctcatgaacagatccttcaagcgtcctcgttgagcatcaacgatcaatcaggtgatagagagatgagcgcgtttacatacttgaggatgaatcctgacttattccatcctgataactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="75940" stop="74325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75641" g_stop="75577" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75576" i_stop="75498" i_length="79">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75497" g_stop="75387" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="176" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75386" i_stop="75288" i_length="99">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75287" g_stop="74625" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="839" r_length="663" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E729504" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>839</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75641" e_stop="75577"/>
          <exon e_start="75497" e_stop="75387"/>
          <exon e_start="75287" e_stop="74625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTCTTAGGTGATACCATTGTGGTAAGTGCTATGTTTTTTTCGAATTTTTGATCGAAGAGTAGAAGACTCACTTTTTTAATCCAAATGACGTGTGATATAGGAAATTCAAGTCGGGATGGGTCCAGCTGGTGAGCTCCGTTATCCATCCTATCCCGAAAAAGATGGAATATGGAAGTTCCCTGGAATCGGTGCTTTTCAGTGTTATGATAAGGTATAAAGCAAGTTCTGTTTTCTATGGTGTGTTTTAGTGTTTAACGTCGTCATTATTACTGATGATTTGTTCTGTTAAATGTATTGTATCGCGTTGCAGTACATGATCGGTAGCTTACAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTGAGTACAACAATTGGCCAGAAGATACAAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATACGGGGAGTTCTTCCTCACTTGGTATTCTCAAATGCTTTTGAACCATGGCGAGAGGATACTGCAATCATCCAAGGCGATATTCGAGGACAAAGGTGTGAAGATTTCAGTTAAGATTGCAGGTATCCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGTTGACTGCTGGATACTACAACACTCGTAACCGAGATGGTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGG</genome_strand>
        <mrna_strand>CCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTCTTAGGTGATACCATTGTG...............................................................................GAAATTCAAGTCGGGATGGGTCCAGCTGGTGAGCTCCGTTATCCATCCTATCCCGAAAAAGATGGAATATGGAAGTTCCCTGGAATCGGTGCTTTTCAGTGTTATGATAAG...................................................................................................TACATGATCGGTAGCTTACAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTGAGTACAACAATTGGCCAGAAGATACAAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATACGGGGAGTTCTTCCTCACTTGGTATTCTCAAATGCTTTTGAACCATGGCGAGAGGATACTGCAATCATCCAAGGCGATATTCGAGGACAAAGGTGTGAAGATTTCAGTTAAGATTGCAGGTATCCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGTTGACTGCTGGATACTACAACACTCGTAACCGAGATGGTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448428" ref_strand="+" ref_description="SGN-E448428 [cSTS-2-N20]">
      <seq>aaaagatggagtatggaaattccctggaattggtgcttttcagtgttatgacaagtacatgatcagtagcttacagggtgcagcagaagcttttggtaagcctgaatggggacacaccggtccaaccgatgctggtcagtacaacaattggccagaagataccaactttttcaagaaggaaggtggtggatgggatagtcaatatggggagttcttcctcacttggtattctgagatgcttttgaaccatggtgagaggatactgcaatcagccaaggcgatattcgaggacaagggtgttaagatttcagttaagattgcaggtattcactggcactatggaacaaggtcccatgcccctgagctgaccgctggatactacaacacccgtaaccgagatggttaccttcccatcgcccaaatgcttgcccgccacggtgcagttttcaacttcacatgtgttgagatgcgtgaccacgagcagccacaagatgcactatgtgcacctgagaagttggttaggcaagtggctttagcaactcaggaagctcaagttccacttgctggggagaatgcattgccacgatacgatgattatgcacatgaacagatccttcaagcatcctcattgaatatcaacgatcaatcangtgatagagagatgtgcgcgtttacatattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="75741" stop="74362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75441" g_stop="75387" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75386" i_stop="75288" i_length="99">
            <donor d_prob="0.962" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75287" g_stop="74662" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="681" r_length="626" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E448428" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E448428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75441" e_stop="75387"/>
          <exon e_start="75287" e_stop="74662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGATGGAATATGGAAGTTCCCTGGAATCGGTGCTTTTCAGTGTTATGATAAGGTATAAAGCAAGTTCTGTTTTCTATGGTGTGTTTTAGTGTTTAACGTCGTCATTATTACTGATGATTTGTTCTGTTAAATGTATTGTATCGCGTTGCAGTACATGATCGGTAGCTTACAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTGAGTACAACAATTGGCCAGAAGATACAAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATACGGGGAGTTCTTCCTCACTTGGTATTCTCAAATGCTTTTGAACCATGGCGAGAGGATACTGCAATCATCCAAGGCGATATTCGAGGACAAAGGTGTGAAGATTTCAGTTAAGATTGCAGGTATCCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGTTGACTGCTGGATACTACAACACTCGTAACCGAGATGGTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTT</genome_strand>
        <mrna_strand>AAAAGATGGAGTATGGAAATTCCCTGGAATTGGTGCTTTTCAGTGTTATGACAAG...................................................................................................TACATGATCAGTAGCTTACAGGGTGCAGCAGAAGCTTTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTCAGTACAACAATTGGCCAGAAGATACCAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATATGGGGAGTTCTTCCTCACTTGGTATTCTGAGATGCTTTTGAACCATGGTGAGAGGATACTGCAATCAGCCAAGGCGATATTCGAGGACAAGGGTGTTAAGATTTCAGTTAAGATTGCAGGTATTCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGCTGACCGCTGGATACTACAACACCCGTAACCGAGATGGTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAGATGCGTGACCACGAGCAGCCACAAGATGCACTATGTGCACCTGAGAAGTTGGTTAGGCAAGTGGCTTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCACATGAACAGATCCTTCAAGCATCCTCATTGAATATCAACGATCAATCANGTGATAGAGAGATGTGCGCGTTTACATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469446" ref_strand="+" ref_description="SGN-E469446 [cSTB-11-B18]">
      <seq>gatgatgggaggaggaatgcggccggatttattagcgtgtcaagcgttgatggaagctcaagtagatgaggtagttgagagagaatataaggttaggaattcgtcggagaaagagaaaggagttccggtgtttgttatgatgccgttggatagtgtgaaaatggatcatactgtgaataggaagaaggcgatgaatgcgagtttacaggcgttgaagagcgccggtgtggaagggattatgatggatgtgtggtggggattggtggagagagatgcgccacggtgcagttttcaacttcacatgtgttgagatgcgtgaccacgagcagccacaagatgcccaatgtgcacctgagaagttggttaggcaagtggcattagcaactcaggaagctcaagttccacttgctggggagaatgcattgccacgatacgatgattatgcacatgaacagatccttcaagcatcctcattgaatatcaacgatcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="77102" stop="74396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76802" g_stop="76524" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76523" i_stop="74912" i_length="1612">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74911" g_stop="74696" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="492" r_length="216" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E469446" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E469446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76802" e_stop="76524"/>
          <exon e_start="74911" e_stop="74696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATGGGAGGAGGAATGCGACCGGATTTATCGGTAGCGTGTCAAGCGTTGATGGAGGCTCAGGTAGAGGAGGTAGTTGAGAGAGAATATAAGGTTAGGAATTCGTCGGAGAAAGAGAAAGGTGTTCCGGTGTTTGTTATGATGCCGTTGGATAGTGTGAAAACGGATCATACTGTGAATAGAAAAAAGGCGATGAATGCGAGTTTACAGGCGTTGAAAAGCGCCGGTGTGGAAGGGATTATGATGGATGTGTGGTGGGGATTGGTGGAGAGAGATGCACCGGGAGAGTATAATTGGGGCGGTTATGCTGAGCTTATGGAAATGGCGAAAAAACATGGACTCAAAGTTCAAGCTGTGATGTCTTTCCATCAATGCGGTGGTAACGTCGGTGATTCCTGCACGTATGTATATTTTCTCCGATGCTATTTTTAATTCGTTTTAACTGCAAATTTGTGATTACCAGATTCAAAATCTAGATCTGTTATAATGAATACCGTCAAATCAAACATGATATAACTCGCATCTCAAAAGCTAATTCGAGATATTTTCACATCGGATGTGGCCTGACTATCATAACATGTCAAATTAGTATTTTATCGTAGTTTAACCTCACAAAAAGCTAACTTAAAAGGGAGAAGCATTGCTCGAAACGAGTGGAGAGATATCATTCCTCGTCGAGGTGGTAAATCTCTTCAACAAATACTTTTAGATAAAAGATTCATAGGATCTGGAAAAGATTAAAGAAGAAAGTTCAAAAAAAGGTTAGTGGATAGTGAGAATATGCTCCTTTATATGTGTGCTAAATGAACTATTTAAAGTAACTATATTTTATCTGGAAAGATAAATGACTTTATAATAGATTGGAATCAACCTGAATAGCATAAAATGGAATATGGAAGATTCATGAATAATTCAATTATCTTTGTTTAATTTTCATTCGAGTTCTGTTATGCGTTTTGATTTCTACTAATCGCGATGTATAGGCGTTGCTTAAGTAGATTTTTGAAATTTCAGGATCCCTCTTCCGAGGTGGGTTGTTGAGGAGATGGAGAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTTCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTCTTAGGTGATACCATTGTGGTAAGTGCTATGTTTTTTTCGAATTTTTGATCGAAGAGTAGAAGACTCACTTTTTTAATCCAAATGACGTGTGATATAGGAAATTCAAGTCGGGATGGGTCCAGCTGGTGAGCTCCGTTATCCATCCTATCCCGAAAAAGATGGAATATGGAAGTTCCCTGGAATCGGTGCTTTTCAGTGTTATGATAAGGTATAAAGCAAGTTCTGTTTTCTATGGTGTGTTTTAGTGTTTAACGTCGTCATTATTACTGATGATTTGTTCTGTTAAATGTATTGTATCGCGTTGCAGTACATGATCGGTAGCTTACAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTGAGTACAACAATTGGCCAGAAGATACAAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATACGGGGAGTTCTTCCTCACTTGGTATTCTCAAATGCTTTTGAACCATGGCGAGAGGATACTGCAATCATCCAAGGCGATATTCGAGGACAAAGGTGTGAAGATTTCAGTTAAGATTGCAGGTATCCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGTTGACTGCTGGATACTACAACACTCGTAACCGAGATGGTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAAT</genome_strand>
        <mrna_strand>GATGATGGGAGGAGGAATGCGGCCGGATTTAT---TAGCGTGTCAAGCGTTGATGGAAGCTCAAGTAGATGAGGTAGTTGAGAGAGAATATAAGGTTAGGAATTCGTCGGAGAAAGAGAAAGGAGTTCCGGTGTTTGTTATGATGCCGTTGGATAGTGTGAAAATGGATCATACTGTGAATAGGAAGAAGGCGATGAATGCGAGTTTACAGGCGTTGAAGAGCGCCGGTGTGGAAGGGATTATGATGGATGTGTGGTGGGGATTGGTGGAGAGAGATGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACGGTGCAGTTTTCAACTTCACATGTGTTGAGATGCGTGACCACGAGCAGCCACAAGATGCCCAATGTGCACCTGAGAAGTTGGTTAGGCAAGTGGCATTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCACATGAACAGATCCTTCAAGCATCCTCATTGAATATCAACGATCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E726026" ref_strand="-" ref_description="SGN-E726026 [LA10AD02]">
      <seq>aacgccacctgcctaaccactttctcaggtgcacattgtgcatcttgtggctgctcgtggtcacgcatttcaacacctgtaaactcgcattcatcgccttttttctattcacagtatgatccgttttcacactatccaacggcatcataacaaacaccggaacacctttctctttctccgacgaattcctaaccttatattctctctcaactacctcctctacctgagcctccatcaacgcttgacacgctaccgataaatccggtcgcattcctcctcccatcatcggactcatcggcggcgacggcgacggcgacaccctgtcaatttcatttcctgttttttgcaccgatacttttaaattcgtcatcggtgttctccacatagctgatgtagctgaactccccttcgccggaacttcgcatgaaactccaccggtttccgccgtgagcgatgttcctgataaggcaccgatctggtgtggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="+" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="74509" stop="77300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74809" g_stop="74886" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74887" i_stop="76593" i_length="1707">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76594" g_stop="77000" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="485" r_length="407" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="+" ref_id="SGN-E726026" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726026" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="74809" e_stop="74886"/>
          <exon e_start="76594" e_stop="77000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGCCACCTGCCTAACCAACTTCTCAGGTGCACATTGTGCATCTTGTGGCTGCTCGTGGTCACGCATTTCAACACATGTGAAGTTGAAAACTGCACCGTGGCGGGCAAGCATTTGGGCGATGGGAAGGTAACCATCTCGGTTACGAGTGTTGTAGTATCCAGCAGTCAACTCAGGGGCATGGGACCTTGTTCCATAGTGCCAGTGGATACCTGCAATCTTAACTGAAATCTTCACACCTTTGTCCTCGAATATCGCCTTGGATGATTGCAGTATCCTCTCGCCATGGTTCAAAAGCATTTGAGAATACCAAGTGAGGAAGAACTCCCCGTATTGACTATCCCATCCACCACCTTCCTTCTTGAAAAAGTTTGTATCTTCTGGCCAATTGTTGTACTCACCAGCATCGGTTGGACCGGTGTGTCCCCATTCAGGCTTACCAAATGCTTCCGCTGCACCCTGTAAGCTACCGATCATGTACTGCAACGCGATACAATACATTTAACAGAACAAATCATCAGTAATAATGACGACGTTAAACACTAAAACACACCATAGAAAACAGAACTTGCTTTATACCTTATCATAACACTGAAAAGCACCGATTCCAGGGAACTTCCATATTCCATCTTTTTCGGGATAGGATGGATAACGGAGCTCACCAGCTGGACCCATCCCGACTTGAATTTCCTATATCACACGTCATTTGGATTAAAAAAGTGAGTCTTCTACTCTTCGATCAAAAATTCGAAAAAAACATAGCACTTACCACAATGGTATCACCTAAGAGATTCTCAAATCTATCTCTAAACCCTCTCATGAAATCAGAATAGCATTGAACAGGAGTCCTTCCTTTAAGAACTGGAAGTGTATCGCAACCAAGCGATACATATTCAAAATTCCTCCTTCCCCACTGATCTGTGTATGCAAGATCTGGATCCTTCTCCATCTCCTCAACAACCCACCTCGGAAGAGGGATCCTGAAATTTCAAAAATCTACTTAAGCAACGCCTATACATCGCGATTAGTAGAAATCAAAACGCATAACAGAACTCGAATGAAAATTAAACAAAGATAATTGAATTATTCATGAATCTTCCATATTCCATTTTATGCTATTCAGGTTGATTCCAATCTATTATAAAGTCATTTATCTTTCCAGATAAAATATAGTTACTTTAAATAGTTCATTTAGCACACATATAAAGGAGCATATTCTCACTATCCACTAACCTTTTTTTGAACTTTCTTCTTTAATCTTTTCCAGATCCTATGAATCTTTTATCTAAAAGTATTTGTTGAAGAGATTTACCACCTCGACGAGGAATGATATCTCTCCACTCGTTTCGAGCAATGCTTCTCCCTTTTAAGTTAGCTTTTTGTGAGGTTAAACTACGATAAAATACTAATTTGACATGTTATGATAGTCAGGCCACATCCGATGTGAAAATATCTCGAATTAGCTTTTGAGATGCGAGTTATATCATGTTTGATTTGACGGTATTCATTATAACAGATCTAGATTTTGAATCTGGTAATCACAAATTTGCAGTTAAAACGAATTAAAAATAGCATCGGAGAAAATATACATACGTGCAGGAATCACCGACGTTACCACCGCATTGATGGAAAGACATCACAGCTTGAACTTTGAGTCCATGTTTTTTCGCCATTTCCATAAGCTCAGCATAACCGCCCCAATTATACTCTCCCGGTGCATCTCTCTCCACCAATCCCCACCACACATCCATCATAATCCCTTCCACACCGGCGCTTTTCAACGCCTGTAAACTCGCATTCATCGCCTTTTTTCTATTCACAGTATGATCCGTTTTCACACTATCCAACGGCATCATAACAAACACCGGAACACCTTTCTCTTTCTCCGACGAATTCCTAACCTTATATTCTCTCTCAACTACCTCCTCTACCTGAGCCTCCATCAACGCTTGACACGCTACCGATAAATCCGGTCGCATTCCTCCTCCCATCATCGGACTCATCGGCGGCGACGGCGACGGCGACACCCTGTCAATTTCATTTCCTGTTTTTTGCACCGATACTTTTAAATTCGTCATCGGTGTTCTCCACATAGCTGATGTAGCTGAACTCCCCTTCGCCGGAACTTCGCATGAAACTCCACCGGTTTCCGCCGTGAGCGATGTTCCTGATAAGGCACCGATCTGGTGTGGC</genome_strand>
        <mrna_strand>AACGCCACCTGCCTAACCACTTTCTCAGGTGCACATTGTGCATCTTGTGGCTGCTCGTGGTCACGCATTTCAACACCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAACTCGCATTCATCGCCTTTTTTCTATTCACAGTATGATCCGTTTTCACACTATCCAACGGCATCATAACAAACACCGGAACACCTTTCTCTTTCTCCGACGAATTCCTAACCTTATATTCTCTCTCAACTACCTCCTCTACCTGAGCCTCCATCAACGCTTGACACGCTACCGATAAATCCGGTCGCATTCCTCCTCCCATCATCGGACTCATCGGCGGCGACGGCGACGGCGACACCCTGTCAATTTCATTTCCTGTTTTTTGCACCGATACTTTTAAATTCGTCATCGGTGTTCTCCACATAGCTGATGTAGCTGAACTCCCCTTCGCCGGAACTTCGCATGAAACTCCACCGGTTTCCGCCGTGAGCGATGTTCCTGATAAGGCACCGATCTGGTGTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E362433" ref_strand="+" ref_description="SGN-E362433 [cLPP-1-I15]">
      <seq>caccctgcagtacatgatcagtagcttacagggtgcagcagaagcttttggtaagcctgaatggggacacaccggtccaaccgatgctggtcagtacaacaattggccagaagataccaactttttcaagaaggaaggtggtggatgggatagtcaatatggggagttcttcctcacttggtattctgagatgcttttgaaccatggtgagaggatactgcaatcagccaaggcgatattcgaggacaagggtgttaagatttcagttaagattgcaggtattcactggcactatggaacaaggtcccatgcccctgagctgaccgctggatactacaacacccgtaaccgagatggttaccttcccatcgcccaaatgcttgcccgccacggtgcagttttcaacttcacatgtgttgagatgcgtgaccacgagcagccacaagatgcactatgtgcacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="75597" stop="74534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75297" g_stop="74834" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E362433" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75297" e_stop="74834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCGTTGCAGTACATGATCGGTAGCTTACAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTGAGTACAACAATTGGCCAGAAGATACAAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATACGGGGAGTTCTTCCTCACTTGGTATTCTCAAATGCTTTTGAACCATGGCGAGAGGATACTGCAATCATCCAAGGCGATATTCGAGGACAAAGGTGTGAAGATTTCAGTTAAGATTGCAGGTATCCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGTTGACTGCTGGATACTACAACACTCGTAACCGAGATGGTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTG</genome_strand>
        <mrna_strand>CACCCTGCAGTACATGATCAGTAGCTTACAGGGTGCAGCAGAAGCTTTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTCAGTACAACAATTGGCCAGAAGATACCAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATATGGGGAGTTCTTCCTCACTTGGTATTCTGAGATGCTTTTGAACCATGGTGAGAGGATACTGCAATCAGCCAAGGCGATATTCGAGGACAAGGGTGTTAAGATTTCAGTTAAGATTGCAGGTATTCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGCTGACCGCTGGATACTACAACACCCGTAACCGAGATGGTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAGATGCGTGACCACGAGCAGCCACAAGATGCACTATGTGCACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699901" ref_strand="+" ref_description="SGN-E699901 [FA11CB07]">
      <seq>gaatcaacctgaatagcataaaatggaatatggaagattcatgaataattcaattatctttgtttaattttcattcgagttctgttatgcgttttgatttctactaatcgcgatgtataggcgttgcttaagtagatttttgaaatttcaggatccctcttccgaggtgggttgttgaggagatggagaaggatccagatcttgcatacacagatcagtggggaaggaggaattttgaatatgtatcgcttggttgcgatacacttccagttcttaaaggaaggactcctgttcaatgctattctgatttcatgagagggtttagagatagatttgagaatctcttaggtgataccattgtggaaattcaagtcgggatgggtccagctggtgagctccgttatccatcctatcccgaaaaagatggaatatggaagttccctggaatcggtgcttttcagtgttatgataagtacatgatcggtagcttacagggtgcagcggaagcatttggtaagcctgaatggggacacaccggtccaaccgatgctggtgagtacaacaattggccagaagatacaaactttttcaagaaggaaggtggtggatgggatagtcaatacggggagttcttcctcacttggtattctcaaatgcttttgaaccatggcgagaggatactgcaatcatccaaggcgatattcgaggacaaaggtgtgaagatttcagttaagattgcaggtatccactggcaccttggaacaaggtcccatgcccctgagttgactgctggatactacaacactcgtaaccgagatgggtaccttcccatcgcccaaatgcttgcccgccacggtgcagttttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="76238" stop="74594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75938" g_stop="75577" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75576" i_stop="75498" i_length="79">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75497" g_stop="75387" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="473" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75386" i_stop="75288" i_length="99">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75287" g_stop="74894" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="867" r_length="394" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E699901" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>867</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75938" e_stop="75577"/>
          <exon e_start="75497" e_stop="75387"/>
          <exon e_start="75287" e_stop="74894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCAACCTGAATAGCATAAAATGGAATATGGAAGATTCATGAATAATTCAATTATCTTTGTTTAATTTTCATTCGAGTTCTGTTATGCGTTTTGATTTCTACTAATCGCGATGTATAGGCGTTGCTTAAGTAGATTTTTGAAATTTCAGGATCCCTCTTCCGAGGTGGGTTGTTGAGGAGATGGAGAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTTCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTCTTAGGTGATACCATTGTGGTAAGTGCTATGTTTTTTTCGAATTTTTGATCGAAGAGTAGAAGACTCACTTTTTTAATCCAAATGACGTGTGATATAGGAAATTCAAGTCGGGATGGGTCCAGCTGGTGAGCTCCGTTATCCATCCTATCCCGAAAAAGATGGAATATGGAAGTTCCCTGGAATCGGTGCTTTTCAGTGTTATGATAAGGTATAAAGCAAGTTCTGTTTTCTATGGTGTGTTTTAGTGTTTAACGTCGTCATTATTACTGATGATTTGTTCTGTTAAATGTATTGTATCGCGTTGCAGTACATGATCGGTAGCTTACAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTGAGTACAACAATTGGCCAGAAGATACAAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATACGGGGAGTTCTTCCTCACTTGGTATTCTCAAATGCTTTTGAACCATGGCGAGAGGATACTGCAATCATCCAAGGCGATATTCGAGGACAAAGGTGTGAAGATTTCAGTTAAGATTGCAGGTATCCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGTTGACTGCTGGATACTACAACACTCGTAACCGAGATGGTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCA</genome_strand>
        <mrna_strand>GAATCAACCTGAATAGCATAAAATGGAATATGGAAGATTCATGAATAATTCAATTATCTTTGTTTAATTTTCATTCGAGTTCTGTTATGCGTTTTGATTTCTACTAATCGCGATGTATAGGCGTTGCTTAAGTAGATTTTTGAAATTTCAGGATCCCTCTTCCGAGGTGGGTTGTTGAGGAGATGGAGAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTTCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTCTTAGGTGATACCATTGTG...............................................................................GAAATTCAAGTCGGGATGGGTCCAGCTGGTGAGCTCCGTTATCCATCCTATCCCGAAAAAGATGGAATATGGAAGTTCCCTGGAATCGGTGCTTTTCAGTGTTATGATAAG...................................................................................................TACATGATCGGTAGCTTACAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTGAGTACAACAATTGGCCAGAAGATACAAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATACGGGGAGTTCTTCCTCACTTGGTATTCTCAAATGCTTTTGAACCATGGCGAGAGGATACTGCAATCATCCAAGGCGATATTCGAGGACAAAGGTGTGAAGATTTCAGTTAAGATTGCAGGTATCCACTGGCACCTTGGAACAAGGTCCCATGCCCCTGAGTTGACTGCTGGATACTACAACACTCGTAACCGAGATGGGTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442826" ref_strand="+" ref_description="SGN-E442826 [cSTA-35-I17]">
      <seq>cttgtgtgatataggaaattcaagtcgggatgggtccagctggagagctccgttatccatcctatccggaaaaagatggagtatggaaattccctggaattggtgcttttcagtgttatgacaaggtataaatcaagttctgttttctatgctgtgttttagttttaacgtcgtcattattactgatgatttgttcttctaaattgatcaccctgcagtacatgatcagtagcttacagggtgcagcagaagcttttggtaagcctgaatggggacacaccggtccaaccgatgctggtcagtacaacaattggccagaagataccaactttttcaagaaggaaggtggtggatgggatagtcaatatggggagttcttcctcacttggtattctgagatgcttttgaaccatggtgagaggatactgcaatcagccaaggcgatattcgaggacaagggtgttaagatttcagttaagattgcaggtattcactggcactatggaacaaggtcccatgcccctgagctgaccgctggatactacaacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="75808" stop="74656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75511" g_stop="74955" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="551" r_length="551" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E442826" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E442826" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75511" e_stop="74955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGTGTGATATAGGAAATTCAAGTCGGGATGGGTCCAGCTGGTGAGCTCCGTTATCCATCCTATCCCGAAAAAGATGGAATATGGAAGTTCCCTGGAATCGGTGCTTTTCAGTGTTATGATAAGGTATAAAGCAAGTTCTGTTTTCTATGGTGTGTTTTAGTGTTTAACGTCGTCATTATTACTGATGATTTGTTCTGTTAAATGTATTGTATCGCGTTGCAGTACATGATCGGTAGCTTACAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTGAGTACAACAATTGGCCAGAAGATACAAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATACGGGGAGTTCTTCCTCACTTGGTATTCTCAAATGCTTTTGAACCATGGCGAGAGGATACTGCAATCATCCAAGGCGATATTCGAGGACAAAGGTGTGAAGATTTCAGTTAAGATTGCAGGTATCCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGTTGACTGCTGGATACTACAACACT</genome_strand>
        <mrna_strand>CTTGTGTGATATAGGAAATTCAAGTCGGGATGGGTCCAGCTGGAGAGCTCCGTTATCCATCCTATCCGGAAAAAGATGGAGTATGGAAATTCCCTGGAATTGGTGCTTTTCAGTGTTATGACAAGGTATAAATCAAGTTCTGTTTTCTATGCTGTGTTTTAGT-TTTAACGTCGTCATTATTACTGATGATTTGTTCT-TCTAA---ATTG-ATCACCCTGCAGTACATGATCAGTAGCTTACAGGGTGCAGCAGAAGCTTTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTCAGTACAACAATTGGCCAGAAGATACCAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATATGGGGAGTTCTTCCTCACTTGGTATTCTGAGATGCTTTTGAACCATGGTGAGAGGATACTGCAATCAGCCAAGGCGATATTCGAGGACAAGGGTGTTAAGATTTCAGTTAAGATTGCAGGTATTCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGCTGACCGCTGGATACTACAACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454040" ref_strand="+" ref_description="SGN-E454040 [cSTS-21-P12]">
      <seq>ctgagcttatggaaatggcgaaaaaacatggactcaaagttcaagctgtgatgtctttccatcaatgtggtggaaacgtcggtgattcctgcacgatccctcttccaaggtgggttgttgaggagatggagaaggatccagatcttgcatacacagatcagtggggaaggaggaattttgaatatgtatcgcttggttgcgatacacttccagttcttaaaggaaggactcctgtccaatgctattctgatttcatgagagggtttagagatagatttgagaatctcctaggtgacaccattgtggaaattcaagtcgggatgggtccagctggagagctccgttatccatcctatccggaaaaagatggagtatggaaattccctggaattggtgcttttcagtgttatgacaagtacatgatcagtagcttacagggtgcagcagaagcttttggtaagcctgaatggggacacaccggtccaaccgatgctggtcagtacaacaattggccagaagataccaactttttcaagaaggaaggtggtggatgggatagtcaatatgggggagttcttcctcacttggtattctgagatgcttttgaaccatggtgagaggatactgcaatcagccaaggcgatattcgaggacaagggtgttaagatttcagttaagattgcangtattcactggcactatggaacaaggtcccatgcccctgagctgaccgctggatacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="76794" stop="74662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76494" g_stop="76401" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76400" i_stop="75788" i_length="613">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75787" g_stop="75577" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="305" r_length="211" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75576" i_stop="75498" i_length="79">
            <donor d_prob="0.967" d_score="0.96"/>
            <acceptor a_prob="0.799" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75497" g_stop="75387" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="416" r_length="111" r_score="0.946"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75386" i_stop="75288" i_length="99">
            <donor d_prob="0.962" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75287" g_stop="74962" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="743" r_length="327" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E454040" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E454040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76494" e_stop="76401"/>
          <exon e_start="75787" e_stop="75577"/>
          <exon e_start="75497" e_stop="75387"/>
          <exon e_start="75287" e_stop="74962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGCTTATGGAAATGGCGAAAAAACATGGACTCAAAGTTCAAGCTGTGATGTCTTTCCATCAATGCGGTGGTAACGTCGGTGATTCCTGCACGTATGTATATTTTCTCCGATGCTATTTTTAATTCGTTTTAACTGCAAATTTGTGATTACCAGATTCAAAATCTAGATCTGTTATAATGAATACCGTCAAATCAAACATGATATAACTCGCATCTCAAAAGCTAATTCGAGATATTTTCACATCGGATGTGGCCTGACTATCATAACATGTCAAATTAGTATTTTATCGTAGTTTAACCTCACAAAAAGCTAACTTAAAAGGGAGAAGCATTGCTCGAAACGAGTGGAGAGATATCATTCCTCGTCGAGGTGGTAAATCTCTTCAACAAATACTTTTAGATAAAAGATTCATAGGATCTGGAAAAGATTAAAGAAGAAAGTTCAAAAAAAGGTTAGTGGATAGTGAGAATATGCTCCTTTATATGTGTGCTAAATGAACTATTTAAAGTAACTATATTTTATCTGGAAAGATAAATGACTTTATAATAGATTGGAATCAACCTGAATAGCATAAAATGGAATATGGAAGATTCATGAATAATTCAATTATCTTTGTTTAATTTTCATTCGAGTTCTGTTATGCGTTTTGATTTCTACTAATCGCGATGTATAGGCGTTGCTTAAGTAGATTTTTGAAATTTCAGGATCCCTCTTCCGAGGTGGGTTGTTGAGGAGATGGAGAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTTCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTCTTAGGTGATACCATTGTGGTAAGTGCTATGTTTTTTTCGAATTTTTGATCGAAGAGTAGAAGACTCACTTTTTTAATCCAAATGACGTGTGATATAGGAAATTCAAGTCGGGATGGGTCCAGCTGGTGAGCTCCGTTATCCATCCTATCCCGAAAAAGATGGAATATGGAAGTTCCCTGGAATCGGTGCTTTTCAGTGTTATGATAAGGTATAAAGCAAGTTCTGTTTTCTATGGTGTGTTTTAGTGTTTAACGTCGTCATTATTACTGATGATTTGTTCTGTTAAATGTATTGTATCGCGTTGCAGTACATGATCGGTAGCTTACAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTGAGTACAACAATTGGCCAGAAGATACAAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATA-CGGGGAGTTCTTCCTCACTTGGTATTCTCAAATGCTTTTGAACCATGGCGAGAGGATACTGCAATCATCCAAGGCGATATTCGAGGACAAAGGTGTGAAGATTTCAGTTAAGATTGCAGGTATCCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGTTGACTGCTGGATACTA</genome_strand>
        <mrna_strand>CTGAGCTTATGGAAATGGCGAAAAAACATGGACTCAAAGTTCAAGCTGTGATGTCTTTCCATCAATGTGGTGGAAACGTCGGTGATTCCTGCAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCCTCTTCCAAGGTGGGTTGTTGAGGAGATGGAGAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTCCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTCCTAGGTGACACCATTGTG...............................................................................GAAATTCAAGTCGGGATGGGTCCAGCTGGAGAGCTCCGTTATCCATCCTATCCGGAAAAAGATGGAGTATGGAAATTCCCTGGAATTGGTGCTTTTCAGTGTTATGACAAG...................................................................................................TACATGATCAGTAGCTTACAGGGTGCAGCAGAAGCTTTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTCAGTACAACAATTGGCCAGAAGATACCAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATATGGGGGAGTTCTTCCTCACTTGGTATTCTGAGATGCTTTTGAACCATGGTGAGAGGATACTGCAATCAGCCAAGGCGATATTCGAGGACAAGGGTGTTAAGATTTCAGTTAAGATTGCANGTATTCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGCTGACCGCTGGATACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560401" ref_strand="+" ref_description="SGN-E560401 [20049]">
      <seq>gaaggatccagatcttgcatacacagatcagtggggaaggaggaattttgaatatgtatcgcttggttgcgatacacttccagttcttaaaggaaggactcctgtccaatgctattctgatttcatgagagggtttagagatagatttgagaatctcctaggtgacaccattgtggaaattcaagtcgggatgggtccagctggagagctccgttatccatcctatccggaaaaagatggagtatggaaattccctggaattggtgcttttcagtgttatgacaagtacatgatcagtagcttacagggtgcagcagaagcttttggtaagcctgaatggggacacaccggtccaaccgatgctggtcagtacaacaattggccagaagataccaactttttcaagaaggaaggtggtggatgggatagtcaatatggggagttcttcctcacttggtattctgagatgcttttgaaccatgggtgagaggatactgcaatcagccaaggcgatattcgagcgacaagggtgttacagatttcagtttagatttgccaggtattcactggcactatggaacaaggtcccatgcccctgaagctgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="76051" stop="74674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75751" g_stop="75577" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75576" i_stop="75498" i_length="79">
            <donor d_prob="0.967" d_score="0.96"/>
            <acceptor a_prob="0.799" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75497" g_stop="75387" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="286" r_length="111" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75386" i_stop="75288" i_length="99">
            <donor d_prob="0.962" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75287" g_stop="74973" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="607" r_length="321" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E560401" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E560401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75751" e_stop="75577"/>
          <exon e_start="75497" e_stop="75387"/>
          <exon e_start="75287" e_stop="74973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTTCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTCTTAGGTGATACCATTGTGGTAAGTGCTATGTTTTTTTCGAATTTTTGATCGAAGAGTAGAAGACTCACTTTTTTAATCCAAATGACGTGTGATATAGGAAATTCAAGTCGGGATGGGTCCAGCTGGTGAGCTCCGTTATCCATCCTATCCCGAAAAAGATGGAATATGGAAGTTCCCTGGAATCGGTGCTTTTCAGTGTTATGATAAGGTATAAAGCAAGTTCTGTTTTCTATGGTGTGTTTTAGTGTTTAACGTCGTCATTATTACTGATGATTTGTTCTGTTAAATGTATTGTATCGCGTTGCAGTACATGATCGGTAGCTTACAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTGAGTACAACAATTGGCCAGAAGATACAAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATACGGGGAGTTCTTCCTCACTTGGTATTCTCAAATGCTTTTGAACCAT-GGCGAGAGGATACTGCAATCATCCAAGGCGATATTCGAG-GACAAAGGTGTGA-AGATTTCAGTTAAGA-TTG-CAGGTATCCACTGGCACTATGGAACAAGGTCCCATGCCCCTG-AGTTGACT</genome_strand>
        <mrna_strand>GAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTCCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTCCTAGGTGACACCATTGTG...............................................................................GAAATTCAAGTCGGGATGGGTCCAGCTGGAGAGCTCCGTTATCCATCCTATCCGGAAAAAGATGGAGTATGGAAATTCCCTGGAATTGGTGCTTTTCAGTGTTATGACAAG...................................................................................................TACATGATCAGTAGCTTACAGGGTGCAGCAGAAGCTTTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTCAGTACAACAATTGGCCAGAAGATACCAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATATGGGGAGTTCTTCCTCACTTGGTATTCTGAGATGCTTTTGAACCATGGGTGAGAGGATACTGCAATCAGCCAAGGCGATATTCGAGCGACAAGGGTGTTACAGATTTCAGTTTAGATTTGCCAGGTATTCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAAGCTGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572871" ref_strand="+" ref_description="SGN-E572871 [32092]">
      <seq>agagtataattggggcggttatgctgagcttatggaaatggcgaaaaaacatggactcaaagttcaagctgtgatgtctttccatcaatgtggtggaaacgtcggtgattcctgcacgatccctcttccaaggtgggttgttgaggagatggagaaggatccagatcttgcatacacagatcagtggggaaggaggaattttgaatatgtatcgcttggttgcgatacacttccagttcttaaaggaaggactcctgtccaatgctattctgatttcatgagagggtttagagatagatttgagaatctcctaggtgacaccattgtggaaattcaagtcgggatgggtccagctggagagctccgttatccatcctatccggaaaaagatggagtatggaaattccctggaattggtgcttttcagtgttatgacaagtacatgatcagtagcttacagggtgcagcagaagcttttggtaagcctgaatggggacacaccggtccaaccgatgctggtcagtacaacaattggccagaagataccaactttttcaagaaggaaggtggtggatgggatagtcaatatggggagttcttcctcacttggtattctgagatgcttttgaaccatgggtgagaggatactgcaatcagccaaggcgatattcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="76817" stop="74756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76517" g_stop="76401" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76400" i_stop="75788" i_length="613">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75787" g_stop="75577" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="328" r_length="211" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75576" i_stop="75498" i_length="79">
            <donor d_prob="0.967" d_score="0.96"/>
            <acceptor a_prob="0.799" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75497" g_stop="75387" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="439" r_length="111" r_score="0.946"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75386" i_stop="75288" i_length="99">
            <donor d_prob="0.962" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75287" g_stop="75056" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="672" r_length="233" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E572871" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E572871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76517" e_stop="76401"/>
          <exon e_start="75787" e_stop="75577"/>
          <exon e_start="75497" e_stop="75387"/>
          <exon e_start="75287" e_stop="75056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTATAATTGGGGCGGTTATGCTGAGCTTATGGAAATGGCGAAAAAACATGGACTCAAAGTTCAAGCTGTGATGTCTTTCCATCAATGCGGTGGTAACGTCGGTGATTCCTGCACGTATGTATATTTTCTCCGATGCTATTTTTAATTCGTTTTAACTGCAAATTTGTGATTACCAGATTCAAAATCTAGATCTGTTATAATGAATACCGTCAAATCAAACATGATATAACTCGCATCTCAAAAGCTAATTCGAGATATTTTCACATCGGATGTGGCCTGACTATCATAACATGTCAAATTAGTATTTTATCGTAGTTTAACCTCACAAAAAGCTAACTTAAAAGGGAGAAGCATTGCTCGAAACGAGTGGAGAGATATCATTCCTCGTCGAGGTGGTAAATCTCTTCAACAAATACTTTTAGATAAAAGATTCATAGGATCTGGAAAAGATTAAAGAAGAAAGTTCAAAAAAAGGTTAGTGGATAGTGAGAATATGCTCCTTTATATGTGTGCTAAATGAACTATTTAAAGTAACTATATTTTATCTGGAAAGATAAATGACTTTATAATAGATTGGAATCAACCTGAATAGCATAAAATGGAATATGGAAGATTCATGAATAATTCAATTATCTTTGTTTAATTTTCATTCGAGTTCTGTTATGCGTTTTGATTTCTACTAATCGCGATGTATAGGCGTTGCTTAAGTAGATTTTTGAAATTTCAGGATCCCTCTTCCGAGGTGGGTTGTTGAGGAGATGGAGAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTTCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTCTTAGGTGATACCATTGTGGTAAGTGCTATGTTTTTTTCGAATTTTTGATCGAAGAGTAGAAGACTCACTTTTTTAATCCAAATGACGTGTGATATAGGAAATTCAAGTCGGGATGGGTCCAGCTGGTGAGCTCCGTTATCCATCCTATCCCGAAAAAGATGGAATATGGAAGTTCCCTGGAATCGGTGCTTTTCAGTGTTATGATAAGGTATAAAGCAAGTTCTGTTTTCTATGGTGTGTTTTAGTGTTTAACGTCGTCATTATTACTGATGATTTGTTCTGTTAAATGTATTGTATCGCGTTGCAGTACATGATCGGTAGCTTACAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTGAGTACAACAATTGGCCAGAAGATACAAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATACGGGGAGTTCTTCCTCACTTGGTATTCTCAAATGCTTTTGAACCAT-GGCGAGAGGATACTGCAATCATCCAAGGCGATATTCG</genome_strand>
        <mrna_strand>AGAGTATAATTGGGGCGGTTATGCTGAGCTTATGGAAATGGCGAAAAAACATGGACTCAAAGTTCAAGCTGTGATGTCTTTCCATCAATGTGGTGGAAACGTCGGTGATTCCTGCAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCCTCTTCCAAGGTGGGTTGTTGAGGAGATGGAGAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTCCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTCCTAGGTGACACCATTGTG...............................................................................GAAATTCAAGTCGGGATGGGTCCAGCTGGAGAGCTCCGTTATCCATCCTATCCGGAAAAAGATGGAGTATGGAAATTCCCTGGAATTGGTGCTTTTCAGTGTTATGACAAG...................................................................................................TACATGATCAGTAGCTTACAGGGTGCAGCAGAAGCTTTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTCAGTACAACAATTGGCCAGAAGATACCAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATATGGGGAGTTCTTCCTCACTTGGTATTCTGAGATGCTTTTGAACCATGGGTGAGAGGATACTGCAATCAGCCAAGGCGATATTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728864" ref_strand="+" ref_description="SGN-E728864 [LA19AG11]">
      <seq>cggtgattcctgcacgatccctcttccgaggtgggttgttgaggagatggagaaggatccagatcttgcatacacagatcagtggggaaggaggaattttgaatatgtatcgcttggttgcgatacacttccagttcttaaaggaaggactcctgttcaatgctattctgatttcatgagagggtttagagatagatttgagaatctcttaggtgataccattgtggaaattcaagtcgggatgggtccagctggtgagctccgttatccatcctatcccgaaaaagatggaatatggaagttccctggaatcggtgcttttcagtgttatgataagtacatgatcggtagcttacagggtgcagcggaagcatttggtaagcctgaatggggacacaccggtccaaccgatgctggtgagtacaacaattggccagaagatacaaactttttcaagaaggaaggtggtggatgggatagtcaatacggcgagttcttcctcacttgttattctcacatgcttttgaaccatggcgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="76092" stop="74786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75787" g_stop="75577" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="226" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75576" i_stop="75498" i_length="79">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75497" g_stop="75387" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="337" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75386" i_stop="75288" i_length="99">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75287" g_stop="75086" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="539" r_length="202" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E728864" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75787" e_stop="75577"/>
          <exon e_start="75497" e_stop="75387"/>
          <exon e_start="75287" e_stop="75086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCCCTCTTCCGAGGTGGGTTGTTGAGGAGATGGAGAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTTCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTCTTAGGTGATACCATTGTGGTAAGTGCTATGTTTTTTTCGAATTTTTGATCGAAGAGTAGAAGACTCACTTTTTTAATCCAAATGACGTGTGATATAGGAAATTCAAGTCGGGATGGGTCCAGCTGGTGAGCTCCGTTATCCATCCTATCCCGAAAAAGATGGAATATGGAAGTTCCCTGGAATCGGTGCTTTTCAGTGTTATGATAAGGTATAAAGCAAGTTCTGTTTTCTATGGTGTGTTTTAGTGTTTAACGTCGTCATTATTACTGATGATTTGTTCTGTTAAATGTATTGTATCGCGTTGCAGTACATGATCGGTAGCTTACAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTGAGTACAACAATTGGCCAGAAGATACAAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATACGGGGAGTTCTTCCTCACTTGGTATTCTCAAATGCTTTTGAACCATGGCGAGA</genome_strand>
        <mrna_strand>GATCCCTCTTCCGAGGTGGGTTGTTGAGGAGATGGAGAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTTCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTCTTAGGTGATACCATTGTG...............................................................................GAAATTCAAGTCGGGATGGGTCCAGCTGGTGAGCTCCGTTATCCATCCTATCCCGAAAAAGATGGAATATGGAAGTTCCCTGGAATCGGTGCTTTTCAGTGTTATGATAAG...................................................................................................TACATGATCGGTAGCTTACAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTGAGTACAACAATTGGCCAGAAGATACAAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATACGGCGAGTTCTTCCTCACTTGTTATTCTCACATGCTTTTGAACCATGGCGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E485443" ref_strand="+" ref_description="SGN-E485443 [cSTE-18-C7]">
      <seq>cttccaaggtgggttgttgaggagatggagaaggatccagatcttgcatacacagatcagtggggaaggaggaattttgaatatgtatcgcttggttgcgatacacttccagttcttaaaggaaggactcctgtccaatgctattctgatttcatgagagggtttagagatagatttgagaatctcctaggtgacaccattgtggaaattcaagtcgggatgggtccagctggagagctccgttatccatcctatccggaaaaagatggagtatggaaattccctggaattggtgcttttcagtgttatgacaagtacatgatcagtagcttacagggtgcagcagaagcttttggtaagcctgaatggggacacaccggtccaaccgatgctggtcagtacaacaattggccagaagataccaactttttcaagaaggaaggtggtggatgggatagtcaatatggggagttcttcctcacttggtattctgagatgcttttgaacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="76080" stop="74794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75780" g_stop="75577" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75576" i_stop="75498" i_length="79">
            <donor d_prob="0.967" d_score="0.96"/>
            <acceptor a_prob="0.799" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75497" g_stop="75387" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="315" r_length="111" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75386" i_stop="75288" i_length="99">
            <donor d_prob="0.962" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75287" g_stop="75094" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="509" r_length="194" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E485443" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E485443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75780" e_stop="75577"/>
          <exon e_start="75497" e_stop="75387"/>
          <exon e_start="75287" e_stop="75094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCGAGGTGGGTTGTTGAGGAGATGGAGAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTTCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTCTTAGGTGATACCATTGTGGTAAGTGCTATGTTTTTTTCGAATTTTTGATCGAAGAGTAGAAGACTCACTTTTTTAATCCAAATGACGTGTGATATAGGAAATTCAAGTCGGGATGGGTCCAGCTGGTGAGCTCCGTTATCCATCCTATCCCGAAAAAGATGGAATATGGAAGTTCCCTGGAATCGGTGCTTTTCAGTGTTATGATAAGGTATAAAGCAAGTTCTGTTTTCTATGGTGTGTTTTAGTGTTTAACGTCGTCATTATTACTGATGATTTGTTCTGTTAAATGTATTGTATCGCGTTGCAGTACATGATCGGTAGCTTACAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTGAGTACAACAATTGGCCAGAAGATACAAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATACGGGGAGTTCTTCCTCACTTGGTATTCTCAAATGCTTTTGAACCA</genome_strand>
        <mrna_strand>CTTCCAAGGTGGGTTGTTGAGGAGATGGAGAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTCCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTCCTAGGTGACACCATTGTG...............................................................................GAAATTCAAGTCGGGATGGGTCCAGCTGGAGAGCTCCGTTATCCATCCTATCCGGAAAAAGATGGAGTATGGAAATTCCCTGGAATTGGTGCTTTTCAGTGTTATGACAAG...................................................................................................TACATGATCAGTAGCTTACAGGGTGCAGCAGAAGCTTTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTCAGTACAACAATTGGCCAGAAGATACCAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATATGGGGAGTTCTTCCTCACTTGGTATTCTGAGATGCTTTTGAACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331073" ref_strand="+" ref_description="SGN-E331073 [cTOD-6-G22]">
      <seq>tggaaatggcgaaaaaacatggactcaaagttcaagctgtgatgtctttccatcaatgcggtggtaacgtcggtgattcctgcacgatccctcttccgaggtgggttgttgaggagatggagaaggatccagatcttgcatacacagatcagtggggaaggaggaattttgaatatgtatcgcttggttgcgatacacttccagttcttaaaggaaggactcctgttcaatgctattctgatttcatgagagggtttagagatagatttgagaatctcttaggtgataccattgtggaaattcaagtcgggatgggtccagctggtgagctccgttatccatcctatcccgaaaaagatggaatatggaagttccctggaatcggtgcttttcagtgttatgataagtacatgatcggtagcttacagggtgcagcggaagcatttggtaagcctgaatggggacacaccggtccaaccgatgctggtgagtacaacaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="76785" stop="74894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76485" g_stop="76401" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76400" i_stop="75788" i_length="613">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75787" g_stop="75577" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="296" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75576" i_stop="75498" i_length="79">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75497" g_stop="75387" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="407" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75386" i_stop="75288" i_length="99">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75287" g_stop="75194" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="501" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E331073" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76485" e_stop="76401"/>
          <exon e_start="75787" e_stop="75577"/>
          <exon e_start="75497" e_stop="75387"/>
          <exon e_start="75287" e_stop="75194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAATGGCGAAAAAACATGGACTCAAAGTTCAAGCTGTGATGTCTTTCCATCAATGCGGTGGTAACGTCGGTGATTCCTGCACGTATGTATATTTTCTCCGATGCTATTTTTAATTCGTTTTAACTGCAAATTTGTGATTACCAGATTCAAAATCTAGATCTGTTATAATGAATACCGTCAAATCAAACATGATATAACTCGCATCTCAAAAGCTAATTCGAGATATTTTCACATCGGATGTGGCCTGACTATCATAACATGTCAAATTAGTATTTTATCGTAGTTTAACCTCACAAAAAGCTAACTTAAAAGGGAGAAGCATTGCTCGAAACGAGTGGAGAGATATCATTCCTCGTCGAGGTGGTAAATCTCTTCAACAAATACTTTTAGATAAAAGATTCATAGGATCTGGAAAAGATTAAAGAAGAAAGTTCAAAAAAAGGTTAGTGGATAGTGAGAATATGCTCCTTTATATGTGTGCTAAATGAACTATTTAAAGTAACTATATTTTATCTGGAAAGATAAATGACTTTATAATAGATTGGAATCAACCTGAATAGCATAAAATGGAATATGGAAGATTCATGAATAATTCAATTATCTTTGTTTAATTTTCATTCGAGTTCTGTTATGCGTTTTGATTTCTACTAATCGCGATGTATAGGCGTTGCTTAAGTAGATTTTTGAAATTTCAGGATCCCTCTTCCGAGGTGGGTTGTTGAGGAGATGGAGAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTTCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTCTTAGGTGATACCATTGTGGTAAGTGCTATGTTTTTTTCGAATTTTTGATCGAAGAGTAGAAGACTCACTTTTTTAATCCAAATGACGTGTGATATAGGAAATTCAAGTCGGGATGGGTCCAGCTGGTGAGCTCCGTTATCCATCCTATCCCGAAAAAGATGGAATATGGAAGTTCCCTGGAATCGGTGCTTTTCAGTGTTATGATAAGGTATAAAGCAAGTTCTGTTTTCTATGGTGTGTTTTAGTGTTTAACGTCGTCATTATTACTGATGATTTGTTCTGTTAAATGTATTGTATCGCGTTGCAGTACATGATCGGTAGCTTACAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTGAGTACAACAATT</genome_strand>
        <mrna_strand>TGGAAATGGCGAAAAAACATGGACTCAAAGTTCAAGCTGTGATGTCTTTCCATCAATGCGGTGGTAACGTCGGTGATTCCTGCAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCCTCTTCCGAGGTGGGTTGTTGAGGAGATGGAGAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTTCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTCTTAGGTGATACCATTGTG...............................................................................GAAATTCAAGTCGGGATGGGTCCAGCTGGTGAGCTCCGTTATCCATCCTATCCCGAAAAAGATGGAATATGGAAGTTCCCTGGAATCGGTGCTTTTCAGTGTTATGATAAG...................................................................................................TACATGATCGGTAGCTTACAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTGAGTACAACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366592" ref_strand="+" ref_description="SGN-E366592 [cLPT-13-B16]">
      <seq>aaaacatggactcaaagttcaagctgtgatgtctttccatcaatgcggtggtaacgtcggcgattcctgcacgatccctcttccgaggtgggttgttgaggagatggagaaggatccagatcttgcatacacagatcagtggggaaggaggaattttgaatatgtatcgcttggttgcgatacacttccagttcttaaaggaaggactcctgttcaatgctattctgatttcatgagagggtttagagatagatttgagaatctcttaggtgataccattgtggaaattcaagtcgggatgggtccagccggagagctccgatatccatcctatcccgaaaaggatggaatatggaagttccctggaattggtgcttttcagtgttatgacaagtacatgatcagtagcttacagggtgcaccggaagcatttggtaagcctgaatggggacacaccggtccaaccgatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="76772" stop="74909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76472" g_stop="76401" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76400" i_stop="75788" i_length="613">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75787" g_stop="75577" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="283" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75576" i_stop="75498" i_length="79">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.799" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75497" g_stop="75387" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="394" r_length="111" r_score="0.946"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75386" i_stop="75288" i_length="99">
            <donor d_prob="0.962" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75287" g_stop="75209" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="473" r_length="79" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E366592" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76472" e_stop="76401"/>
          <exon e_start="75787" e_stop="75577"/>
          <exon e_start="75497" e_stop="75387"/>
          <exon e_start="75287" e_stop="75209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACATGGACTCAAAGTTCAAGCTGTGATGTCTTTCCATCAATGCGGTGGTAACGTCGGTGATTCCTGCACGTATGTATATTTTCTCCGATGCTATTTTTAATTCGTTTTAACTGCAAATTTGTGATTACCAGATTCAAAATCTAGATCTGTTATAATGAATACCGTCAAATCAAACATGATATAACTCGCATCTCAAAAGCTAATTCGAGATATTTTCACATCGGATGTGGCCTGACTATCATAACATGTCAAATTAGTATTTTATCGTAGTTTAACCTCACAAAAAGCTAACTTAAAAGGGAGAAGCATTGCTCGAAACGAGTGGAGAGATATCATTCCTCGTCGAGGTGGTAAATCTCTTCAACAAATACTTTTAGATAAAAGATTCATAGGATCTGGAAAAGATTAAAGAAGAAAGTTCAAAAAAAGGTTAGTGGATAGTGAGAATATGCTCCTTTATATGTGTGCTAAATGAACTATTTAAAGTAACTATATTTTATCTGGAAAGATAAATGACTTTATAATAGATTGGAATCAACCTGAATAGCATAAAATGGAATATGGAAGATTCATGAATAATTCAATTATCTTTGTTTAATTTTCATTCGAGTTCTGTTATGCGTTTTGATTTCTACTAATCGCGATGTATAGGCGTTGCTTAAGTAGATTTTTGAAATTTCAGGATCCCTCTTCCGAGGTGGGTTGTTGAGGAGATGGAGAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTTCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTCTTAGGTGATACCATTGTGGTAAGTGCTATGTTTTTTTCGAATTTTTGATCGAAGAGTAGAAGACTCACTTTTTTAATCCAAATGACGTGTGATATAGGAAATTCAAGTCGGGATGGGTCCAGCTGGTGAGCTCCGTTATCCATCCTATCCCGAAAAAGATGGAATATGGAAGTTCCCTGGAATCGGTGCTTTTCAGTGTTATGATAAGGTATAAAGCAAGTTCTGTTTTCTATGGTGTGTTTTAGTGTTTAACGTCGTCATTATTACTGATGATTTGTTCTGTTAAATGTATTGTATCGCGTTGCAGTACATGATCGGTAGCTTACAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTG</genome_strand>
        <mrna_strand>AAAACATGGACTCAAAGTTCAAGCTGTGATGTCTTTCCATCAATGCGGTGGTAACGTCGGCGATTCCTGCAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCCTCTTCCGAGGTGGGTTGTTGAGGAGATGGAGAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTTCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTCTTAGGTGATACCATTGTG...............................................................................GAAATTCAAGTCGGGATGGGTCCAGCCGGAGAGCTCCGATATCCATCCTATCCCGAAAAGGATGGAATATGGAAGTTCCCTGGAATTGGTGCTTTTCAGTGTTATGACAAG...................................................................................................TACATGATCAGTAGCTTACAGGGTGCACCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E485508" ref_strand="+" ref_description="SGN-E485508 [cSTE-18-C8]">
      <seq>cttccaaggtgggttgttgaggagatggagaaggatccagatcttgcatacacagatcagtggggaaggaggaattttgaatatgtatcgcttggttgcgatacacttccagttcttaaaggaaggactcctgtccaatgctattctgatttcatgagagggtttagagatagatttgagaatctcctaggtgacaccattgtggaaattcaagtcgggatgggtccagctggagagctccgttatccatcctatccggaaaaagatggagtatggaaattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="76080" stop="75119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75780" g_stop="75577" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75576" i_stop="75498" i_length="79">
            <donor d_prob="0.967" d_score="0.96"/>
            <acceptor a_prob="0.799" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75497" g_stop="75419" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="283" r_length="79" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E485508" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E485508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75780" e_stop="75577"/>
          <exon e_start="75497" e_stop="75419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCGAGGTGGGTTGTTGAGGAGATGGAGAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTTCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTCTTAGGTGATACCATTGTGGTAAGTGCTATGTTTTTTTCGAATTTTTGATCGAAGAGTAGAAGACTCACTTTTTTAATCCAAATGACGTGTGATATAGGAAATTCAAGTCGGGATGGGTCCAGCTGGTGAGCTCCGTTATCCATCCTATCCCGAAAAAGATGGAATATGGAAGTTCC</genome_strand>
        <mrna_strand>CTTCCAAGGTGGGTTGTTGAGGAGATGGAGAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTCCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTCCTAGGTGACACCATTGTG...............................................................................GAAATTCAAGTCGGGATGGGTCCAGCTGGAGAGCTCCGTTATCCATCCTATCCGGAAAAAGATGGAGTATGGAAATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366504" ref_strand="+" ref_description="SGN-E366504 [cLPT-13-B20]">
      <seq>aaaacatggactcaaagttcaagctgtgatgtctttccatcaatgcggtggtaacgtcggcgattcctgcacgatccctcttccgaggtgggttgttgaggagatggagaaggatccagatcttgcatacacagatcagaggggaaggaggaattttgaatatgtatcgcttggttgcgatacacttccagctcttaaaggaaggactcctgttcaacgctattctgatatcatgagagggtttagagatagatctgagaatctcttaggagataccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="76772" stop="75280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76472" g_stop="76401" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76400" i_stop="75788" i_length="613">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75787" g_stop="75580" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="280" r_length="208" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E366504" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>280</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76472" e_stop="76401"/>
          <exon e_start="75787" e_stop="75580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACATGGACTCAAAGTTCAAGCTGTGATGTCTTTCCATCAATGCGGTGGTAACGTCGGTGATTCCTGCACGTATGTATATTTTCTCCGATGCTATTTTTAATTCGTTTTAACTGCAAATTTGTGATTACCAGATTCAAAATCTAGATCTGTTATAATGAATACCGTCAAATCAAACATGATATAACTCGCATCTCAAAAGCTAATTCGAGATATTTTCACATCGGATGTGGCCTGACTATCATAACATGTCAAATTAGTATTTTATCGTAGTTTAACCTCACAAAAAGCTAACTTAAAAGGGAGAAGCATTGCTCGAAACGAGTGGAGAGATATCATTCCTCGTCGAGGTGGTAAATCTCTTCAACAAATACTTTTAGATAAAAGATTCATAGGATCTGGAAAAGATTAAAGAAGAAAGTTCAAAAAAAGGTTAGTGGATAGTGAGAATATGCTCCTTTATATGTGTGCTAAATGAACTATTTAAAGTAACTATATTTTATCTGGAAAGATAAATGACTTTATAATAGATTGGAATCAACCTGAATAGCATAAAATGGAATATGGAAGATTCATGAATAATTCAATTATCTTTGTTTAATTTTCATTCGAGTTCTGTTATGCGTTTTGATTTCTACTAATCGCGATGTATAGGCGTTGCTTAAGTAGATTTTTGAAATTTCAGGATCCCTCTTCCGAGGTGGGTTGTTGAGGAGATGGAGAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTTCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTCTTAGGTGATACCATT</genome_strand>
        <mrna_strand>AAAACATGGACTCAAAGTTCAAGCTGTGATGTCTTTCCATCAATGCGGTGGTAACGTCGGCGATTCCTGCAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCCTCTTCCGAGGTGGGTTGTTGAGGAGATGGAGAAGGATCCAGATCTTGCATACACAGATCAGAGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGCTCTTAAAGGAAGGACTCCTGTTCAACGCTATTCTGATATCATGAGAGGGTTTAGAGATAGATCTGAGAATCTCTTAGGAGATACCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297859" ref_strand="+" ref_description="SGN-E297859 [cLET-38-L20]">
      <seq>gggattggtggagagagatgcaccgggagagtataattggggcggttatgctgagcttatggaaatggcgaaaaaacatggactcaaagttcaagctgtgatgtctttccatcaatgcggtggtaacgtcggtgattcctgcacgatccctcttccgaggtgggttgttgaggagatggagaaggatccagatcttgcatacacagatcagtggggaaggaggaattttgaatatgtatcgcttggttgcgatacacttccagttcttaaaggaaggactcctgttcaatgctattctgatttcatgagagggtttagagatagatttgagaatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="76844" stop="75295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76544" g_stop="76401" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76400" i_stop="75788" i_length="613">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75787" g_stop="75595" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="337" r_length="193" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E297859" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76544" e_stop="76401"/>
          <exon e_start="75787" e_stop="75595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGATTGGTGGAGAGAGATGCACCGGGAGAGTATAATTGGGGCGGTTATGCTGAGCTTATGGAAATGGCGAAAAAACATGGACTCAAAGTTCAAGCTGTGATGTCTTTCCATCAATGCGGTGGTAACGTCGGTGATTCCTGCACGTATGTATATTTTCTCCGATGCTATTTTTAATTCGTTTTAACTGCAAATTTGTGATTACCAGATTCAAAATCTAGATCTGTTATAATGAATACCGTCAAATCAAACATGATATAACTCGCATCTCAAAAGCTAATTCGAGATATTTTCACATCGGATGTGGCCTGACTATCATAACATGTCAAATTAGTATTTTATCGTAGTTTAACCTCACAAAAAGCTAACTTAAAAGGGAGAAGCATTGCTCGAAACGAGTGGAGAGATATCATTCCTCGTCGAGGTGGTAAATCTCTTCAACAAATACTTTTAGATAAAAGATTCATAGGATCTGGAAAAGATTAAAGAAGAAAGTTCAAAAAAAGGTTAGTGGATAGTGAGAATATGCTCCTTTATATGTGTGCTAAATGAACTATTTAAAGTAACTATATTTTATCTGGAAAGATAAATGACTTTATAATAGATTGGAATCAACCTGAATAGCATAAAATGGAATATGGAAGATTCATGAATAATTCAATTATCTTTGTTTAATTTTCATTCGAGTTCTGTTATGCGTTTTGATTTCTACTAATCGCGATGTATAGGCGTTGCTTAAGTAGATTTTTGAAATTTCAGGATCCCTCTTCCGAGGTGGGTTGTTGAGGAGATGGAGAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTTCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTC</genome_strand>
        <mrna_strand>GGGATTGGTGGAGAGAGATGCACCGGGAGAGTATAATTGGGGCGGTTATGCTGAGCTTATGGAAATGGCGAAAAAACATGGACTCAAAGTTCAAGCTGTGATGTCTTTCCATCAATGCGGTGGTAACGTCGGTGATTCCTGCAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCCTCTTCCGAGGTGGGTTGTTGAGGAGATGGAGAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTTCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E472709" ref_strand="+" ref_description="SGN-E472709 [cSTB-29-L13]">
      <seq>cgttgatggaagctcaggtagatgaggtagttgagagagaatataaggttaggaattcgtcggagaaagagaaaggagttccggtgtttgttatgatgccgttggatagtgtgaaaatggatcatactgtgaataggaagaaggcgatgaatgcgagtttacaggcgttgaagagcgccggtgtggaagggattatgatggatgtgtggtggggattggtggagagagatgcgccgggagagtataattggggcggttatgctgagcttatggaaatggcgaaaaaacatggactcaaagttcaagctgtgatgtctttccatcaatgtggtggaaacgtcggtgattcctgcacgatccctcttccaaggtgggttgttgaggagatggagaaggattcanatcttgcatacacagatcagtggggaaggaggaattttgaatatgtatcgnttggttgcgatacacttccagttcttaaaggaagggctcctgtccaatgctattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="77055" stop="75335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76755" g_stop="76401" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76400" i_stop="75788" i_length="613">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75787" g_stop="75635" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="508" r_length="153" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E472709" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E472709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76755" e_stop="76401"/>
          <exon e_start="75787" e_stop="75635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTGATGGAGGCTCAGGTAGAGGAGGTAGTTGAGAGAGAATATAAGGTTAGGAATTCGTCGGAGAAAGAGAAAGGTGTTCCGGTGTTTGTTATGATGCCGTTGGATAGTGTGAAAACGGATCATACTGTGAATAGAAAAAAGGCGATGAATGCGAGTTTACAGGCGTTGAAAAGCGCCGGTGTGGAAGGGATTATGATGGATGTGTGGTGGGGATTGGTGGAGAGAGATGCACCGGGAGAGTATAATTGGGGCGGTTATGCTGAGCTTATGGAAATGGCGAAAAAACATGGACTCAAAGTTCAAGCTGTGATGTCTTTCCATCAATGCGGTGGTAACGTCGGTGATTCCTGCACGTATGTATATTTTCTCCGATGCTATTTTTAATTCGTTTTAACTGCAAATTTGTGATTACCAGATTCAAAATCTAGATCTGTTATAATGAATACCGTCAAATCAAACATGATATAACTCGCATCTCAAAAGCTAATTCGAGATATTTTCACATCGGATGTGGCCTGACTATCATAACATGTCAAATTAGTATTTTATCGTAGTTTAACCTCACAAAAAGCTAACTTAAAAGGGAGAAGCATTGCTCGAAACGAGTGGAGAGATATCATTCCTCGTCGAGGTGGTAAATCTCTTCAACAAATACTTTTAGATAAAAGATTCATAGGATCTGGAAAAGATTAAAGAAGAAAGTTCAAAAAAAGGTTAGTGGATAGTGAGAATATGCTCCTTTATATGTGTGCTAAATGAACTATTTAAAGTAACTATATTTTATCTGGAAAGATAAATGACTTTATAATAGATTGGAATCAACCTGAATAGCATAAAATGGAATATGGAAGATTCATGAATAATTCAATTATCTTTGTTTAATTTTCATTCGAGTTCTGTTATGCGTTTTGATTTCTACTAATCGCGATGTATAGGCGTTGCTTAAGTAGATTTTTGAAATTTCAGGATCCCTCTTCCGAGGTGGGTTGTTGAGGAGATGGAGAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTTCAATGCTATTC</genome_strand>
        <mrna_strand>CGTTGATGGAAGCTCAGGTAGATGAGGTAGTTGAGAGAGAATATAAGGTTAGGAATTCGTCGGAGAAAGAGAAAGGAGTTCCGGTGTTTGTTATGATGCCGTTGGATAGTGTGAAAATGGATCATACTGTGAATAGGAAGAAGGCGATGAATGCGAGTTTACAGGCGTTGAAGAGCGCCGGTGTGGAAGGGATTATGATGGATGTGTGGTGGGGATTGGTGGAGAGAGATGCGCCGGGAGAGTATAATTGGGGCGGTTATGCTGAGCTTATGGAAATGGCGAAAAAACATGGACTCAAAGTTCAAGCTGTGATGTCTTTCCATCAATGTGGTGGAAACGTCGGTGATTCCTGCAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCCTCTTCCAAGGTGGGTTGTTGAGGAGATGGAGAAGGATTCANATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGNTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGGCTCCTGTCCAATGCTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333490" ref_strand="+" ref_description="SGN-E333490 [cTOD-20-L11]">
      <seq>ttataatattattattattatggcaatgagtctgccacaccagatcggtgccttatcaggaacatcgctcacggcggaaaccggtggagtttcatgcgaagttccggcgaaggggagttcagctacatcagctatgtggagaacaccgatgacgaatttaaaagtatcggtgcaaaaaacaggaaatgaaattgacagggtgtcgccgtcgccgtcgccgccgatgagtccgatgatgggaggaggaatgcgaccggatttatcggtagcgtgtcaagcgttgatggaggctcaggtagaggaggtagttgagagagaatataaggttaggaattcgtcggagaaagagaaaggtgttccggtgtttgttatgatgccgttggatagtgtgaaaacggatcatactgtgaatagaaaaaaggcgatgaatgcgagtttacaggcgttgaaaagcgccggtgtggaagggattatgatggatgtgtggtggggattggtggagagagatgcaccgggagagtataattggggcggttatgctgagcttatggaaatggcgaaaaacatggactcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="77333" stop="76158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77033" g_stop="76458" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E333490" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77033" e_stop="76458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATAATATTATTATTATTATGGCAATGAGTCTGCCACACCAGATCGGTGCCTTATCAGGAACATCGCTCACGGCGGAAACCGGTGGAGTTTCATGCGAAGTTCCGGCGAAGGGGAGTTCAGCTACATCAGCTATGTGGAGAACACCGATGACGAATTTAAAAGTATCGGTGCAAAAAACAGGAAATGAAATTGACAGGGTGTCGCCGTCGCCGTCGCCGCCGATGAGTCCGATGATGGGAGGAGGAATGCGACCGGATTTATCGGTAGCGTGTCAAGCGTTGATGGAGGCTCAGGTAGAGGAGGTAGTTGAGAGAGAATATAAGGTTAGGAATTCGTCGGAGAAAGAGAAAGGTGTTCCGGTGTTTGTTATGATGCCGTTGGATAGTGTGAAAACGGATCATACTGTGAATAGAAAAAAGGCGATGAATGCGAGTTTACAGGCGTTGAAAAGCGCCGGTGTGGAAGGGATTATGATGGATGTGTGGTGGGGATTGGTGGAGAGAGATGCACCGGGAGAGTATAATTGGGGCGGTTATGCTGAGCTTATGGAAATGGCGAAAAAACATGGACTCAA</genome_strand>
        <mrna_strand>TTATAATATTATTATTATTATGGCAATGAGTCTGCCACACCAGATCGGTGCCTTATCAGGAACATCGCTCACGGCGGAAACCGGTGGAGTTTCATGCGAAGTTCCGGCGAAGGGGAGTTCAGCTACATCAGCTATGTGGAGAACACCGATGACGAATTTAAAAGTATCGGTGCAAAAAACAGGAAATGAAATTGACAGGGTGTCGCCGTCGCCGTCGCCGCCGATGAGTCCGATGATGGGAGGAGGAATGCGACCGGATTTATCGGTAGCGTGTCAAGCGTTGATGGAGGCTCAGGTAGAGGAGGTAGTTGAGAGAGAATATAAGGTTAGGAATTCGTCGGAGAAAGAGAAAGGTGTTCCGGTGTTTGTTATGATGCCGTTGGATAGTGTGAAAACGGATCATACTGTGAATAGAAAAAAGGCGATGAATGCGAGTTTACAGGCGTTGAAAAGCGCCGGTGTGGAAGGGATTATGATGGATGTGTGGTGGGGATTGGTGGAGAGAGATGCACCGGGAGAGTATAATTGGGGCGGTTATGCTGAGCTTATGGAAATGGCG-AAAAACATGGACTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475759" ref_strand="+" ref_description="SGN-E475759 [cSTB-41-N15]">
      <seq>gtttgttatgatgccgttggatagtgtgaaaatggatcatactgtgaataggaagaaggcgatgaatgcgagtttacaggcgttgaagagcgccggtgtggaagggattatgatggatgtgtggtggggattggtggagagagatgcgccatgagagtataattggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="76970" stop="76204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76670" g_stop="76504" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E475759" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>167</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E475759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76670" e_stop="76504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGTTATGATGCCGTTGGATAGTGTGAAAACGGATCATACTGTGAATAGAAAAAAGGCGATGAATGCGAGTTTACAGGCGTTGAAAAGCGCCGGTGTGGAAGGGATTATGATGGATGTGTGGTGGGGATTGGTGGAGAGAGATGCACCGGGAGAGTATAATTGGG</genome_strand>
        <mrna_strand>GTTTGTTATGATGCCGTTGGATAGTGTGAAAATGGATCATACTGTGAATAGGAAGAAGGCGATGAATGCGAGTTTACAGGCGTTGAAGAGCGCCGGTGTGGAAGGGATTATGATGGATGTGTGGTGGGGATTGGTGGAGAGAGATGCGCCATGAGAGTATAATTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E537390" ref_strand="+" ref_description="SGN-E537390 [letfr53]">
      <seq>aaaaaaaaaaattaaaaaaattcatcatttttaatctgcaaaaaaaaaaattagttataatattattattattatggcaatgagtctgccacaccagatcggtgccttatcaggaacatcgctcacggcggaaaccggtggagtttcatgcgaagttccggcgaaggggagttcagctacatcagctatgtggagaacaccgatgacgaatttaaaagtatcggtgcaaaaaacaggaaatgaaattgacagggtgtcgccgtcgccgtcgccgccgatgagtccgatgatgggaggaggaatgcgaccggatttatcggtagcgtgtcaagcgttgatggaggctcaggtagaggaggtagttgagagagaatataaggttaggaattcgtcggagaaagagaaaggtgttccggtgtttgttatgatgccgttggatagtgtgaaaacggatcatactgtgaatagaaaaaaggcgatgaatgcgagtttacaggcgttgaaaagcgccggtgtggaagggattatgatggatgtgtggtggggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="77388" stop="76239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77088" g_stop="76539" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E537390" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E537390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77088" e_stop="76539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAAAATTAAAAAAAATTCATCATTTTTAATCTGCAAAAAAAAAAATTAGTTATAATATTATTATTATTATGGCAATGAGTCTGCCACACCAGATCGGTGCCTTATCAGGAACATCGCTCACGGCGGAAACCGGTGGAGTTTCATGCGAAGTTCCGGCGAAGGGGAGTTCAGCTACATCAGCTATGTGGAGAACACCGATGACGAATTTAAAAGTATCGGTGCAAAAAACAGGAAATGAAATTGACAGGGTGTCGCCGTCGCCGTCGCCGCCGATGAGTCCGATGATGGGAGGAGGAATGCGACCGGATTTATCGGTAGCGTGTCAAGCGTTGATGGAGGCTCAGGTAGAGGAGGTAGTTGAGAGAGAATATAAGGTTAGGAATTCGTCGGAGAAAGAGAAAGGTGTTCCGGTGTTTGTTATGATGCCGTTGGATAGTGTGAAAACGGATCATACTGTGAATAGAAAAAAGGCGATGAATGCGAGTTTACAGGCGTTGAAAAGCGCCGGTGTGGAAGGGATTATGATGGATGTGTGGTGGGGATT</genome_strand>
        <mrna_strand>AAAAAAAAAAATTAAAA-AAATTCATCATTTTTAATCTGCAAAAAAAAAAATTAGTTATAATATTATTATTATTATGGCAATGAGTCTGCCACACCAGATCGGTGCCTTATCAGGAACATCGCTCACGGCGGAAACCGGTGGAGTTTCATGCGAAGTTCCGGCGAAGGGGAGTTCAGCTACATCAGCTATGTGGAGAACACCGATGACGAATTTAAAAGTATCGGTGCAAAAAACAGGAAATGAAATTGACAGGGTGTCGCCGTCGCCGTCGCCGCCGATGAGTCCGATGATGGGAGGAGGAATGCGACCGGATTTATCGGTAGCGTGTCAAGCGTTGATGGAGGCTCAGGTAGAGGAGGTAGTTGAGAGAGAATATAAGGTTAGGAATTCGTCGGAGAAAGAGAAAGGTGTTCCGGTGTTTGTTATGATGCCGTTGGATAGTGTGAAAACGGATCATACTGTGAATAGAAAAAAGGCGATGAATGCGAGTTTACAGGCGTTGAAAAGCGCCGGTGTGGAAGGGATTATGATGGATGTGTGGTGGGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E567506" ref_strand="+" ref_description="SGN-E567506 [11642]">
      <seq>cacaattctaactcctccttctccattttctccatcaatttggtgaacagaaaaaaataaagaaaatcatcattttaatctgaaaaaaaattaatattattattatggcaatgagtctgccacaccagatcggtgccttatcaggaacatcgctcacggcggaaaccggtggagtttcatgcgaagttccggcgaaggggagttcagctacatcagctatgtggagaacaccgatgacgaatttaaaagtatcggtacaaaaaacaggaactgaaattgacagggtgtcgccgtcgccgtcgccgccgatgagtccgatgatgggaggaggaatgcggccggatttattagcgtgtcaagcgttgatggaagctcaggtagatgaggtagttgagagagaatataaggttaggaattcgtcggagaaagagaaaggagttccgggtgtttgttcatgattgcgtttggatagtgtgaccaatggatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="77442" stop="76331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77142" g_stop="76631" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E567506" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.047" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E567506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77142" e_stop="76631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAATTTCAACTCCTCCTTCTCCATTTTTCTCCATCAATTTGGTGAACAAAACAAAAAAAAAAATTAAAAAAAATTCATCATTTTTAATCTGCAAAAAAAAAAATTAGTTATAATATTATTATTATTATGGCAATGAGTCTGCCACACCAGATCGGTGCCTTATCAGGAACATCGCTCACGGCGGAAACCGGTGGAGTTTCATGCGAAGTTCCGGCGAAGGGGAGTTCAGCTACATCAGCTATGTGGAGAACACCGATGACGAATTTAAAAGTATCGGTGCAAAAAACAGGAAATGAAATTGACAGGGTGTCGCCGTCGCCGTCGCCGCCGATGAGTCCGATGATGGGAGGAGGAATGCGACCGGATTTATCGGTAGCGTGTCAAGCGTTGATGGAGGCTCAGGTAGAGGAGGTAGTTGAGAGAGAATATAAGGTTAGGAATTCGTCGGAGAAAGAGAAAGGTGTTCC-GGTGTTTGTT-ATGA-TGCCGTTGGATAGTGTGA-AAACGGATCAT</genome_strand>
        <mrna_strand>CACAATTCTAACTCCTCCTTCTCCA-TTTTCTCCATCAATTTGGTGAA-----C--AGAAAAAAA-TAAAGAAAA-TCATCA-TTTTAATCTG-----AAAAAAA--A--T-T-A-A-TATTATTATTATGGCAATGAGTCTGCCACACCAGATCGGTGCCTTATCAGGAACATCGCTCACGGCGGAAACCGGTGGAGTTTCATGCGAAGTTCCGGCGAAGGGGAGTTCAGCTACATCAGCTATGTGGAGAACACCGATGACGAATTTAAAAGTATCGGTACAAAAAACAGGAACTGAAATTGACAGGGTGTCGCCGTCGCCGTCGCCGCCGATGAGTCCGATGATGGGAGGAGGAATGCGGCCGGATTTAT---TAGCGTGTCAAGCGTTGATGGAAGCTCAGGTAGATGAGGTAGTTGAGAGAGAATATAAGGTTAGGAATTCGTCGGAGAAAGAGAAAGGAGTTCCGGGTGTTTGTTCATGATTGCGTTTGGATAGTGTGACCAATGGATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479901" ref_strand="+" ref_description="SGN-E479901 [cSTD-11-F14]">
      <seq>cacaattctaactcctccttctccattttctccatcaatttggtgaacagaaaaaaataaaaaaatcatcattttaatctgaaaaaaaattaatattattattatggcaatgagtctgccacaccagatcggtgccttatcaggaacatcgctcacggcggaaaccggtggagtttcatgcgaagttccggcgaaggggagttcagctacatcagctatgtggagaacaccgatgacgaatttaaaagtatcggtacaaaaaacaggaactgaaattgacagggtgtcgccgtcgccgtcgccgccgatgagtccgatgatgggaggaggaatgcggccggatttattagcgtgtcaagcgttgatggaagctcaggtagatgaggtagttgagagagaatataaggttaggaattcgtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="77442" stop="76394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77142" g_stop="76694" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-E479901" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.067" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E479901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77142" e_stop="76694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAATTTCAACTCCTCCTTCTCCATTTTTCTCCATCAATTTGGTGAACAAAACAAAAAAAAAAATTAAAAAAAATTCATCATTTTTAATCTGCAAAAAAAAAAATTAGTTATAATATTATTATTATTATGGCAATGAGTCTGCCACACCAGATCGGTGCCTTATCAGGAACATCGCTCACGGCGGAAACCGGTGGAGTTTCATGCGAAGTTCCGGCGAAGGGGAGTTCAGCTACATCAGCTATGTGGAGAACACCGATGACGAATTTAAAAGTATCGGTGCAAAAAACAGGAAATGAAATTGACAGGGTGTCGCCGTCGCCGTCGCCGCCGATGAGTCCGATGATGGGAGGAGGAATGCGACCGGATTTATCGGTAGCGTGTCAAGCGTTGATGGAGGCTCAGGTAGAGGAGGTAGTTGAGAGAGAATATAAGGTTAGGAATTCGTCG</genome_strand>
        <mrna_strand>CACAATTCTAACTCCTCCTTCTCCA-TTTTCTCCATCAATTTGGTGAA-----C--AGAAAAAAA-T-AAAAAAA-TCATCA-TTTTAATCTG-----AAAAAAA--A--T-TAATA-T--TATTATTATGGCAATGAGTCTGCCACACCAGATCGGTGCCTTATCAGGAACATCGCTCACGGCGGAAACCGGTGGAGTTTCATGCGAAGTTCCGGCGAAGGGGAGTTCAGCTACATCAGCTATGTGGAGAACACCGATGACGAATTTAAAAGTATCGGTACAAAAAACAGGAACTGAAATTGACAGGGTGTCGCCGTCGCCGTCGCCGCCGATGAGTCCGATGATGGGAGGAGGAATGCGGCCGGATTTAT---TAGCGTGTCAAGCGTTGATGGAAGCTCAGGTAGATGAGGTAGTTGAGAGAGAATATAAGGTTAGGAATTCGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="+" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="78423" stop="79318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78723" g_stop="79044" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="+" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78723" e_stop="79044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATAT-CTTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACATTTCTGTTGTATAAAGCTGGAGATAACTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCGTTGGTCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATGTACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAA-TTATACACTTCTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="+" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="78423" stop="79318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78723" g_stop="79013" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="+" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78723" e_stop="79013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATAT-CTTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACATTTCTGTTGTATAAAGCTGGAGATAACTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCGTTGGTCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATGTACAATTTTCTCTCGCTTTATACAAAACAGAAACAGA</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>80</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="5448" PGL_stop="6661"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5448" e_stop="5514"/>
            <exon e_start="5971" e_stop="6035"/>
            <exon e_start="6119" e_stop="6213"/>
            <exon e_start="6293" e_stop="6661"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.535" e_score="1.000"/>
          <exon-intron don_prob="0.842" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5448" e_stop="5514" e_length="67"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.535">
            <gDNA_intron_boundary i_start="5515" i_stop="5970" i_length="456"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5971" e_stop="6035" e_length="65"/>
          </exon>
          <intron i_serial="2" don_prob="0.842" acc_prob="0.985">
            <gDNA_intron_boundary i_start="6036" i_stop="6118" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6119" e_stop="6213" e_length="95"/>
          </exon>
          <intron i_serial="3" don_prob="0.973" acc_prob="1.000">
            <gDNA_intron_boundary i_start="6214" i_stop="6292" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="6293" e_stop="6661" e_length="369"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5448" stop="5514"/>
              <exon start="5971" stop="6035"/>
              <exon start="6119" stop="6213"/>
              <exon start="6293" stop="6661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5448" stop="5514"/>
              <exon start="5971" stop="6035"/>
              <exon start="6119" stop="6213"/>
              <exon start="6293" stop="6661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5449" stop="5514"/>
              <exon start="5971" stop="6035"/>
              <exon start="6119" stop="6213"/>
              <exon start="6293" stop="6501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284638" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTCAGGGTAAGCGGCGTCCATTTGTCGTGGAAACCGTGAAGGCAGATGATGAAGCAAAATTTG : GAAGAGGTCCTTCTCAACCTGCTCCAAAGTTTGTTGGAAATTTAATAGCATTTCTTCTCAACATA : GTCGGACCGAAGGGTCTAGAATTTGCACGTTACTCGCTAGATTATCACACAATCAGAAATTACTTAAACGTAGTCCGCAAATGGGGAAAAGAAAG : AGCGGACAGACATATGCCTGAATATGCAAAGAAAATTGTTAGCATGTACAACGAGAGTGGAGAAATTGATCAAATGCTTTCCAAAAAGTGAATAATTTGATGGTAGAACTTTGGCATTTGCAACTCAAGCTTTGGTGAACAAAGTTATCCGGTACCTATGCTGGTGGAAGGTAGCAAGTATCCCATAGAGTAGTCGAGGTGCGTGCGAGCTAACCCGTACACCATGGTTATCAAAAAAATGTTGGTGATTGCAACTCTTCATGTACGTGTATAGTGTCTAATTAAACACACATCAGAATTAACTCTTTTTGATAGAATTGTAATTCCTTTTATAATAATTAACTATGTTGACCATTGGTAAAAACAACT</gDNA_template>
            <first_frame> F  F  Q  G  K  R  R  P  F  V  V  E  T  V  K  A  D  D  E  A  K  F   : G  R  G  P  S  Q  P  A  P  K  F  V  G  N  L  I  A  F  L  L  N  I  :  V  G  P  K  G  L  E  F  A  R  Y  S  L  D  Y  H  T  I  R  N  Y  L  N  V  V  R  K  W  G  K  E  R :   A  D  R  H  M  P  E  Y  A  K  K  I  V  S  M  Y  N  E  S  G  E  I  D  Q  M  L  S  K  K  *  I  I  *  W  *  N  F  G  I  C  N  S  S  F  G  E  Q  S  Y  P  V  P  M  L  V  E  G  S  K  Y  P  I  E  *  S  R  C  V  R  A  N  P  Y  T  M  V  I  K  K  M  L  V  I  A  T  L  H  V  R  V  *  C  L  I  K  H  T  S  E  L  T  L  F  D  R  I  V  I  P  F  I  I  I  N  Y  V  D  H  W  *  K  Q   </first_frame>
            <second_frame>  F  F  R  V  S  G  V  H  L  S  W  K  P  *  R  Q  M  M  K  Q  N  L  :  E  E  V  L  L  N  L  L  Q  S  L  L  E  I  *  *  H  F  F  S  T  * :   S  D  R  R  V  *  N  L  H  V  T  R  *  I  I  T  Q  S  E  I  T  *  T  *  S  A  N  G  E  K  K   : E  R  T  D  I  C  L  N  M  Q  R  K  L  L  A  C  T  T  R  V  E  K  L  I  K  C  F  P  K  S  E  *  F  D  G  R  T  L  A  F  A  T  Q  A  L  V  N  K  V  I  R  Y  L  C  W  W  K  V  A  S  I  P  *  S  S  R  G  A  C  E  L  T  R  T  P  W  L  S  K  K  C  W  *  L  Q  L  F  M  Y  V  Y  S  V  *  L  N  T  H  Q  N  *  L  F  L  I  E  L  *  F  L  L  *  *  L  T  M  L  T  I  G  K  N  N  </second_frame>
            <third_frame>   F  S  G  *  A  A  S  I  C  R  G  N  R  E  G  R  *  *  S  K  I  W :   K  R  S  F  S  T  C  S  K  V  C  W  K  F  N  S  I  S  S  Q  H   : S  R  T  E  G  S  R  I  C  T  L  L  A  R  L  S  H  N  Q  K  L  L  K  R  S  P  Q  M  G  K  R  K  :  S  G  Q  T  Y  A  *  I  C  K  E  N  C  *  H  V  Q  R  E  W  R  N  *  S  N  A  F  Q  K  V  N  N  L  M  V  E  L  W  H  L  Q  L  K  L  W  *  T  K  L  S  G  T  Y  A  G  G  R  *  Q  V  S  H  R  V  V  E  V  R  A  S  *  P  V  H  H  G  Y  Q  K  N  V  G  D  C  N  S  S  C  T  C  I  V  S  N  *  T  H  I  R  I  N  S  F  *  *  N  C  N  S  F  Y  N  N  *  L  C  *  P  L  V  K  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0037E15.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5448" stop="5514"/>
                    <exon start="5971" stop="6035"/>
                    <exon start="6119" stop="6213"/>
                    <exon start="6293" stop="6383"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFQGKRRPFVVETVKADDEAKFGRGPSQPAPKFVGNLIAFLLNIVGPKGLEFARYSLDYHTIRNYLNVVRKWGKERADRHMPEYAKKIVSMYNESGEIDQMLSKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="12396" PGL_stop="10873"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12396" e_stop="12259"/>
            <exon e_start="11858" e_stop="11487"/>
            <exon e_start="11137" e_stop="10873"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12396" e_stop="12259" e_length="138"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="12258" i_stop="11859" i_length="400"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11858" e_stop="11487" e_length="372"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="11486" i_stop="11138" i_length="349"/>
          </intron>
          <exon e_serial="3" e_score="0.966">
            <gDNA_exon_boundary e_start="11137" e_stop="10873" e_length="265"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12396" stop="12259"/>
              <exon start="11858" stop="11487"/>
              <exon start="11137" stop="10922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12396" stop="12259"/>
              <exon start="11858" stop="11487"/>
              <exon start="11137" stop="10924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11636" stop="11487"/>
              <exon start="11137" stop="10873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389666" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATGCTTGTGACTATAAAACAGGGGAAGTTTATGAAGGGAAGAATGTGTTAGTTGTTGGATGTGGTAATTCAGGCATGGAAGTTTCACTTGATCTTTGTCACCATAATGCAAGTCCATTCATGGTCGTTCGAAGCTCG : GTTCATGTTTTACCAAGGGAAATACTCGGAAAATCAACGTTTGAGTTAGGAGTATCAATGATGAAATGGCTATCAATTGATGTAGTTGACAAGATATTACTAGTTGCAGCAAGGTTACTTCTTGGAAACATAGAAAAGTATGGTTTAAAAAGGCCATCCATTGGACCTTTACAACTCAAGAATACAGAAGGAAAAACTCCAGTTCTAGACATAGGTGCATTACAAAAGATTAAAACAGGAGACATAAAGATAGTTCCAGCAATCAAAAAATTTTCTCAAGGAAAAGTAGAATTTGTCAATGGAGAAATACAAGAAATTGATTGTATCATTTTGGCAACAGGATATTGCAGCAATGTTCCTTCTTGGTTAAAG : GAAAGTGAATTCTTTTCAAGGGGAGGGATTTCCAAGAAGTCCATTTCCAAATGGATGGAAAGGAAAAGCTGGTTTATATGCAGTTGGATTTACAAAGAGAGGACTTTTCTGGTGCATCTTTGGATGCAATTAAAGTATCACAAGATATTGGAAAAAATTTGGAAAGAAAGAAAATTAAAACAAGAAAAAATACAATCTGTTGCTGTTGCATGTCATAGAAGAAACAAGTTATCTTCCTTCTAGTAAACGACAACAACATACTCAG</gDNA_template>
            <first_frame> H  A  C  D  Y  K  T  G  E  V  Y  E  G  K  N  V  L  V  V  G  C  G  N  S  G  M  E  V  S  L  D  L  C  H  H  N  A  S  P  F  M  V  V  R  S  S  :  V  H  V  L  P  R  E  I  L  G  K  S  T  F  E  L  G  V  S  M  M  K  W  L  S  I  D  V  V  D  K  I  L  L  V  A  A  R  L  L  L  G  N  I  E  K  Y  G  L  K  R  P  S  I  G  P  L  Q  L  K  N  T  E  G  K  T  P  V  L  D  I  G  A  L  Q  K  I  K  T  G  D  I  K  I  V  P  A  I  K  K  F  S  Q  G  K  V  E  F  V  N  G  E  I  Q  E  I  D  C  I  I  L  A  T  G  Y  C  S  N  V  P  S  W  L  K  :  E  S  E  F  F  S  R  G  G  I  S  K  K  S  I  S  K  W  M  E  R  K  S  W  F  I  C  S  W  I  Y  K  E  R  T  F  L  V  H  L  W  M  Q  L  K  Y  H  K  I  L  E  K  I  W  K  E  R  K  L  K  Q  E  K  I  Q  S  V  A  V  A  C  H  R  R  N  K  L  S  S  F  *  *  T  T  T  T  Y  S  </first_frame>
            <second_frame>  M  L  V  T  I  K  Q  G  K  F  M  K  G  R  M  C  *  L  L  D  V  V  I  Q  A  W  K  F  H  L  I  F  V  T  I  M  Q  V  H  S  W  S  F  E  A  R :   F  M  F  Y  Q  G  K  Y  S  E  N  Q  R  L  S  *  E  Y  Q  *  *  N  G  Y  Q  L  M  *  L  T  R  Y  Y  *  L  Q  Q  G  Y  F  L  E  T  *  K  S  M  V  *  K  G  H  P  L  D  L  Y  N  S  R  I  Q  K  E  K  L  Q  F  *  T  *  V  H  Y  K  R  L  K  Q  E  T  *  R  *  F  Q  Q  S  K  N  F  L  K  E  K  *  N  L  S  M  E  K  Y  K  K  L  I  V  S  F  W  Q  Q  D  I  A  A  M  F  L  L  G  *  R :   K  V  N  S  F  Q  G  E  G  F  P  R  S  P  F  P  N  G  W  K  G  K  A  G  L  Y  A  V  G  F  T  K  R  G  L  F  W  C  I  F  G  C  N  *  S  I  T  R  Y  W  K  K  F  G  K  K  E  N  *  N  K  K  K  Y  N  L  L  L  L  H  V  I  E  E  T  S  Y  L  P  S  S  K  R  Q  Q  H  T  Q </second_frame>
            <third_frame>   C  L  *  L  *  N  R  G  S  L  *  R  E  E  C  V  S  C  W  M  W  *  F  R  H  G  S  F  T  *  S  L  S  P  *  C  K  S  I  H  G  R  S  K  L   : G  S  C  F  T  K  G  N  T  R  K  I  N  V  *  V  R  S  I  N  D  E  M  A  I  N  *  C  S  *  Q  D  I  T  S  C  S  K  V  T  S  W  K  H  R  K  V  W  F  K  K  A  I  H  W  T  F  T  T  Q  E  Y  R  R  K  N  S  S  S  R  H  R  C  I  T  K  D  *  N  R  R  H  K  D  S  S  S  N  Q  K  I  F  S  R  K  S  R  I  C  Q  W  R  N  T  R  N  *  L  Y  H  F  G  N  R  I  L  Q  Q  C  S  F  L  V  K   : G  K  *  I  L  F  K  G  R  D  F  Q  E  V  H  F  Q  M  D  G  K  E  K  L  V  Y  M  Q  L  D  L  Q  R  E  D  F  S  G  A  S  L  D  A  I  K  V  S  Q  D  I  G  K  N  L  E  R  K  K  I  K  T  R  K  N  T  I  C  C  C  C  M  S  *  K  K  Q  V  I  F  L  L  V  N  D  N  N  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0037E15.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12396" stop="12259"/>
                    <exon start="11858" stop="11487"/>
                    <exon start="11137" stop="10895"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>750</number_coding_nucleotides>
                  <number_encoded_amino_acids>250</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HACDYKTGEVYEGKNVLVVGCGNSGMEVSLDLCHHNASPFMVVRSSVHVLPREILGKSTFELGVSMMKWLSIDVVDKILLVAARLLLGNIEKYGLKRPSIGPLQLKNTEGKTPVLDIGALQKIKTGDIKIVPAIKKFSQGKVEFVNGEIQEIDCIILATGYCSNVPSWLKESEFFSRGGISKKSISKWMERKSWFICSWIYKERTFLVHLWMQLKYHKILEKIWKERKLKQEKIQSVAVACHRRNKLSSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="26318" PGL_stop="26757"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26318" e_stop="26757"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="26318" e_stop="26757" e_length="440"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26318" stop="26757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243215" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATTGTAGATGACCAAATTTTTTTCCGAATACGAAATTAAATTACAATACACACAAAACAATAGTTTAATTTTTTTTCTTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGGATAAGAAACTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAAAATATACCTTGAACTTTTATAGAAGAATCATATGTACCACTAAATAATTTTTTTTAAAAATTATAAGTAATAAATATAAATTTAAAACTAATTATTTAACTTTCGTCAAATGAAGGGTATATGTGAGCCATTTTGTAACGGTAGGTGTATATGTGAGCCATTTGTATAACGGTAAGGGCATATATGAGCCACTTTCATAACGAGGGATGTATCAGCTCCAAATGACAAAGTTGAGGGGTATATCAGACCCTTTTCCCT</gDNA_template>
            <first_frame> L  L  *  M  T  K  F  F  S  E  Y  E  I  K  L  Q  Y  T  Q  N  N  S  L  I  F  F  L  *  T  K  E  *  K  K  K  T  K  *  G  *  E  T  Q  I  I  I  I  K  E  V  K  K  *  F  M  Y  E  K  N  *  K  I  Y  L  E  L  L  *  K  N  H  M  Y  H  *  I  I  F  F  K  N  Y  K  *  *  I  *  I  *  N  *  L  F  N  F  R  Q  M  K  G  I  C  E  P  F  C  N  G  R  C  I  C  E  P  F  V  *  R  *  G  H  I  *  A  T  F  I  T  R  D  V  S  A  P  N  D  K  V  E  G  Y  I  R  P  F  S   </first_frame>
            <second_frame>  Y  C  R  *  P  N  F  F  P  N  T  K  L  N  Y  N  T  H  K  T  I  V  *  F  F  F  F  K  L  R  N  E  R  K  K  Q  N  K  D  K  K  L  K  *  L  *  *  K  K  S  K  N  N  L  C  M  K  K  I  K  K  Y  T  L  N  F  Y  R  R  I  I  C  T  T  K  *  F  F  L  K  I  I  S  N  K  Y  K  F  K  T  N  Y  L  T  F  V  K  *  R  V  Y  V  S  H  F  V  T  V  G  V  Y  V  S  H  L  Y  N  G  K  G  I  Y  E  P  L  S  *  R  G  M  Y  Q  L  Q  M  T  K  L  R  G  I  S  D  P  F  P  </second_frame>
            <third_frame>   I  V  D  D  Q  I  F  F  R  I  R  N  *  I  T  I  H  T  K  Q  *  F  N  F  F  S  L  N  *  G  M  K  E  K  N  K  I  R  I  R  N  S  N  N  Y  N  K  R  S  Q  K  I  I  Y  V  *  K  K  L  K  N  I  P  *  T  F  I  E  E  S  Y  V  P  L  N  N  F  F  *  K  L  *  V  I  N  I  N  L  K  L  I  I  *  L  S  S  N  E  G  Y  M  *  A  I  L  *  R  *  V  Y  M  *  A  I  C  I  T  V  R  A  Y  M  S  H  F  H  N  E  G  C  I  S  S  K  *  Q  S  *  G  V  Y  Q  T  L  F  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0037E15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="55482" PGL_stop="52394"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55482" e_stop="55396"/>
            <exon e_start="53773" e_stop="52394"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.942" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="55482" e_stop="55396" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.942" acc_prob="0.000">
            <gDNA_intron_boundary i_start="55395" i_stop="53774" i_length="1622"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="53773" e_stop="52394" e_length="1380"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55482" stop="55396"/>
              <exon start="53773" stop="52934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55457" stop="55396"/>
              <exon start="53773" stop="53172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55456" stop="55396"/>
              <exon start="53773" stop="53254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55456" stop="55396"/>
              <exon start="53773" stop="53273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55427" stop="55396"/>
              <exon start="53773" stop="53131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55424" stop="55396"/>
              <exon start="53773" stop="53306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55424" stop="55396"/>
              <exon start="53773" stop="53306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53402" stop="52944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53274" stop="52394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52932" stop="52444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733525" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTAGTTATCTGCCTCGGAACCTCCGAATTTTATAATCTTATAGGTAGAAGTGAAGAAAAAATCAGTAAAAATTCTGAGAATTTGAG : TCGGTGAAATGGCAGCAGCATCAGCAACTACTCTCTCAGTTGGTTCCGCCACATCCTTTGGCTCCATAGTGAGCCCAAAATTACAATCAAAGGCCTTTATTGCGAAATGCAATACCAGGGACTACCTTAGGAGTTTCAGTGGCCTTAAGGCAGAGGCATTTGTACGATGTGAATCCGAGTCGTCATTTCTAGGAAATGAAAGCATTGCAGCTCTTCGACAATCCATTACTCCTAAAGCCCGAAACCAAAAGCAGAGATCTTCGAACCATGTTCAGCCTCAAGCATCTTATAAAGTGGCTGTTCTCGGAGCCTCTGGCGGTATAGGCCAGCCTCTAGCTCTTCTGATTAAGATGTCACCGCTAGTATCATCGTTGCACCTTTATGATATTGCAAATGTCAAAGGAGTCGCAGCAGATCTCAGCCATTGCAACACTCCCGCTCAGGTTTTTGACTTTACGGGAGCTTCTGAGTTGGCCAATTCTTTGAAAGGTATAGATGTAGTTGTCATACCAGCTGGCGTTCCGAGAAAGCCTGGTATGACACGGGACGACTTGTTCAACATAAATGCTAATATTGTGAAAAGCTTGGTTGAGGCTGTTGCTGACAATTGCCCAGATGCCTTTATCCACATTATCAGCAATCCAGTCAACTCCACAGTGCCGATTGCTGCCGAGGTTCTGAAGCAAAAGGGTGTGTATGATCCTAAAAAACTCTTTGGTGTTACCACCCTGGACGTTGTCAGAGCAAACACATTCGTCGCGCAGAAGAAAAACCTGAAACTCATTGACGTTGACGTCCCCGTGATTGGTGGGCATGCAGGGATAACAATTCTGCCATTGCTGTCAAAGACAAGACCATCAACTACTTTCACGGACGAAGAAGTGCAGGAACTAACCGTGAGGATCCAAAACGCTGGGACCGAGGTCGTTGAAGCAAAGGCTGGAGCAGGATCTGCAACACTGTCAATGGCATATGCTGCAGCTAGATTTGTTGAATCCTCACTTCGTGCCCTTGACGGTGATGCTGATGTTTACGAGTGTTCTTACGTTCAATCTGACCTGACGGAACTTCCATTCTTTGCATCACGAGTTAAACTAGGAAGGAATGGAATCGAGGCATTGATTTCGTCTGATCTCCGTGGATTAACTGAGTATGAACAGAAGGCATTAGAAGCTCTAAAGATAGAGTTGAAAGCTAGCATTGAGAAAGGGATAGCTTATGCTCAAAAACAAACAGTGAGTGCTTAGAGAAAGAGTTTAGTTTAGATTAACTATAGGAAAAGATTCTCAACATGACAATTTTTGCATGGTTTGAACTTACTAAGCCCTTTATTCTTTTTATTGGTCTGAACTCTACTAGTGTTTTGTTATTGCTTCCTTT</gDNA_template>
            <first_frame> L  S  Y  L  P  R  N  L  R  I  L  *  S  Y  R  *  K  *  R  K  N  Q  *  K  F  *  E  F  E  :  S  V  K  W  Q  Q  H  Q  Q  L  L  S  Q  L  V  P  P  H  P  L  A  P  *  *  A  Q  N  Y  N  Q  R  P  L  L  R  N  A  I  P  G  T  T  L  G  V  S  V  A  L  R  Q  R  H  L  Y  D  V  N  P  S  R  H  F  *  E  M  K  A  L  Q  L  F  D  N  P  L  L  L  K  P  E  T  K  S  R  D  L  R  T  M  F  S  L  K  H  L  I  K  W  L  F  S  E  P  L  A  V  *  A  S  L  *  L  F  *  L  R  C  H  R  *  Y  H  R  C  T  F  M  I  L  Q  M  S  K  E  S  Q  Q  I  S  A  I  A  T  L  P  L  R  F  L  T  L  R  E  L  L  S  W  P  I  L  *  K  V  *  M  *  L  S  Y  Q  L  A  F  R  E  S  L  V  *  H  G  T  T  C  S  T  *  M  L  I  L  *  K  A  W  L  R  L  L  L  T  I  A  Q  M  P  L  S  T  L  S  A  I  Q  S  T  P  Q  C  R  L  L  P  R  F  *  S  K  R  V  C  M  I  L  K  N  S  L  V  L  P  P  W  T  L  S  E  Q  T  H  S  S  R  R  R  K  T  *  N  S  L  T  L  T  S  P  *  L  V  G  M  Q  G  *  Q  F  C  H  C  C  Q  R  Q  D  H  Q  L  L  S  R  T  K  K  C  R  N  *  P  *  G  S  K  T  L  G  P  R  S  L  K  Q  R  L  E  Q  D  L  Q  H  C  Q  W  H  M  L  Q  L  D  L  L  N  P  H  F  V  P  L  T  V  M  L  M  F  T  S  V  L  T  F  N  L  T  *  R  N  F  H  S  L  H  H  E  L  N  *  E  G  M  E  S  R  H  *  F  R  L  I  S  V  D  *  L  S  M  N  R  R  H  *  K  L  *  R  *  S  *  K  L  A  L  R  K  G  *  L  M  L  K  N  K  Q  *  V  L  R  E  R  V  *  F  R  L  T  I  G  K  D  S  Q  H  D  N  F  C  M  V  *  T  Y  *  A  L  Y  S  F  Y  W  S  E  L  Y  *  C  F  V  I  A  S  F </first_frame>
            <second_frame>  L  V  I  C  L  G  T  S  E  F  Y  N  L  I  G  R  S  E  E  K  I  S  K  N  S  E  N  L  S :   R  *  N  G  S  S  I  S  N  Y  S  L  S  W  F  R  H  I  L  W  L  H  S  E  P  K  I  T  I  K  G  L  Y  C  E  M  Q  Y  Q  G  L  P  *  E  F  Q  W  P  *  G  R  G  I  C  T  M  *  I  R  V  V  I  S  R  K  *  K  H  C  S  S  S  T  I  H  Y  S  *  S  P  K  P  K  A  E  I  F  E  P  C  S  A  S  S  I  L  *  S  G  C  S  R  S  L  W  R  Y  R  P  A  S  S  S  S  D  *  D  V  T  A  S  I  I  V  A  P  L  *  Y  C  K  C  Q  R  S  R  S  R  S  Q  P  L  Q  H  S  R  S  G  F  *  L  Y  G  S  F  *  V  G  Q  F  F  E  R  Y  R  C  S  C  H  T  S  W  R  S  E  K  A  W  Y  D  T  G  R  L  V  Q  H  K  C  *  Y  C  E  K  L  G  *  G  C  C  *  Q  L  P  R  C  L  Y  P  H  Y  Q  Q  S  S  Q  L  H  S  A  D  C  C  R  G  S  E  A  K  G  C  V  *  S  *  K  T  L  W  C  Y  H  P  G  R  C  Q  S  K  H  I  R  R  A  E  E  K  P  E  T  H  *  R  *  R  P  R  D  W  W  A  C  R  D  N  N  S  A  I  A  V  K  D  K  T  I  N  Y  F  H  G  R  R  S  A  G  T  N  R  E  D  P  K  R  W  D  R  G  R  *  S  K  G  W  S  R  I  C  N  T  V  N  G  I  C  C  S  *  I  C  *  I  L  T  S  C  P  *  R  *  C  *  C  L  R  V  F  L  R  S  I  *  P  D  G  T  S  I  L  C  I  T  S  *  T  R  K  E  W  N  R  G  I  D  F  V  *  S  P  W  I  N  *  V  *  T  E  G  I  R  S  S  K  D  R  V  E  S  *  H  *  E  R  D  S  L  C  S  K  T  N  S  E  C  L  E  K  E  F  S  L  D  *  L  *  E  K  I  L  N  M  T  I  F  A  W  F  E  L  T  K  P  F  I  L  F  I  G  L  N  S  T  S  V  L  L  L  L  P   </second_frame>
            <third_frame>   *  L  S  A  S  E  P  P  N  F  I  I  L  *  V  E  V  K  K  K  S  V  K  I  L  R  I  *   : V  G  E  M  A  A  A  S  A  T  T  L  S  V  G  S  A  T  S  F  G  S  I  V  S  P  K  L  Q  S  K  A  F  I  A  K  C  N  T  R  D  Y  L  R  S  F  S  G  L  K  A  E  A  F  V  R  C  E  S  E  S  S  F  L  G  N  E  S  I  A  A  L  R  Q  S  I  T  P  K  A  R  N  Q  K  Q  R  S  S  N  H  V  Q  P  Q  A  S  Y  K  V  A  V  L  G  A  S  G  G  I  G  Q  P  L  A  L  L  I  K  M  S  P  L  V  S  S  L  H  L  Y  D  I  A  N  V  K  G  V  A  A  D  L  S  H  C  N  T  P  A  Q  V  F  D  F  T  G  A  S  E  L  A  N  S  L  K  G  I  D  V  V  V  I  P  A  G  V  P  R  K  P  G  M  T  R  D  D  L  F  N  I  N  A  N  I  V  K  S  L  V  E  A  V  A  D  N  C  P  D  A  F  I  H  I  I  S  N  P  V  N  S  T  V  P  I  A  A  E  V  L  K  Q  K  G  V  Y  D  P  K  K  L  F  G  V  T  T  L  D  V  V  R  A  N  T  F  V  A  Q  K  K  N  L  K  L  I  D  V  D  V  P  V  I  G  G  H  A  G  I  T  I  L  P  L  L  S  K  T  R  P  S  T  T  F  T  D  E  E  V  Q  E  L  T  V  R  I  Q  N  A  G  T  E  V  V  E  A  K  A  G  A  G  S  A  T  L  S  M  A  Y  A  A  A  R  F  V  E  S  S  L  R  A  L  D  G  D  A  D  V  Y  E  C  S  Y  V  Q  S  D  L  T  E  L  P  F  F  A  S  R  V  K  L  G  R  N  G  I  E  A  L  I  S  S  D  L  R  G  L  T  E  Y  E  Q  K  A  L  E  A  L  K  I  E  L  K  A  S  I  E  K  G  I  A  Y  A  Q  K  Q  T  V  S  A  *  R  K  S  L  V  *  I  N  Y  R  K  R  F  S  T  *  Q  F  L  H  G  L  N  L  L  S  P  L  F  F  L  L  V  *  T  L  L  V  F  C  Y  C  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0037E15.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55396" stop="52527"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1245</number_coding_nucleotides>
                  <number_encoded_amino_acids>415</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VGEMAAASATTLSVGSATSFGSIVSPKLQSKAFIAKCNTRDYLRSFSGLKAEAFVRCESESSFLGNESIAALRQSITPKARNQKQRSSNHVQPQASYKVAVLGASGGIGQPLALLIKMSPLVSSLHLYDIANVKGVAADLSHCNTPAQVFDFTGASELANSLKGIDVVVIPAGVPRKPGMTRDDLFNINANIVKSLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVIGGHAGITILPLLSKTRPSTTFTDEEVQELTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDADVYECSYVQSDLTELPFFASRVKLGRNGIEALISSDLRGLTEYEQKALEALKIELKASIEKGIAYAQKQTVSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="52434" PGL_stop="53169"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52434" e_stop="53169"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="52434" e_stop="53169" e_length="736"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52434" stop="53169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577749" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAAAGAATAAAGGGCTTAGTAAGTTCAAACCATGCAAAAATTGTCATGTTGAGAATCTTTTCCTATAGTTAATCTAAACTAAACTCTTTCTCTAAGCACTCACTGTTTGTTTTTGAGCATAAGCTATCCCTTTCTCAATGCTAGCTTTCAACTCTATCTTTAGAGCTTCTAATGCCTTCTGTTCATACTCAGTTAATCCACGGAGATCAGACGAAATCAATGCCTCGATTCCATTCCTTCCTAGTTTAACTCGTGATGCAAAGAATGGAAGTTCCGTCAGGTCAGATTGAACGTAAGAACACTCGTAAACATCAGCATCACCGTCAAGGGCACGAAGTGAGGATTCAACAAATCTAGCTGCAGCATATGCCATTGACAGTGTTGCAGATCCTGCTCCAGCCTTTGCTTCAACGACCTCGGTCCCAGCGTTTTGGATCCTCACGGTTAGTTCCTGCACTTCTTCGTCCGTGAAAGTAGTTGATGGTCTTGTCTTTGACAGCAATGGCAGAATTGTTATCCCTGCATGCCCACCAATCACGGGGACGTCAACGTCAATGAGTTTCAGGTTTTTCTTCTGCGCGACGAATGTGTTTGCTCTGACAACGTCCAGGGTGGTAACACCAAAGAGTTTTTTAGGATCATACACACCCTTTTGCTTCAGAACCTCGGCAGCAATCGGCACTGTGGAGTTGACTGGATTGCTGATAATGTGGATAAAGGCATCTGGGCAATTG</gDNA_template>
            <first_frame> *  K  E  *  R  A  *  *  V  Q  T  M  Q  K  L  S  C  *  E  S  F  P  I  V  N  L  N  *  T  L  S  L  S  T  H  C  L  F  L  S  I  S  Y  P  F  L  N  A  S  F  Q  L  Y  L  *  S  F  *  C  L  L  F  I  L  S  *  S  T  E  I  R  R  N  Q  C  L  D  S  I  P  S  *  F  N  S  *  C  K  E  W  K  F  R  Q  V  R  L  N  V  R  T  L  V  N  I  S  I  T  V  K  G  T  K  *  G  F  N  K  S  S  C  S  I  C  H  *  Q  C  C  R  S  C  S  S  L  C  F  N  D  L  G  P  S  V  L  D  P  H  G  *  F  L  H  F  F  V  R  E  S  S  *  W  S  C  L  *  Q  Q  W  Q  N  C  Y  P  C  M  P  T  N  H  G  D  V  N  V  N  E  F  Q  V  F  L  L  R  D  E  C  V  C  S  D  N  V  Q  G  G  N  T  K  E  F  F  R  I  I  H  T  L  L  L  Q  N  L  G  S  N  R  H  C  G  V  D  W  I  A  D  N  V  D  K  G  I  W  A  I  </first_frame>
            <second_frame>  K  K  N  K  G  L  S  K  F  K  P  C  K  N  C  H  V  E  N  L  F  L  *  L  I  *  T  K  L  F  L  *  A  L  T  V  C  F  *  A  *  A  I  P  F  S  M  L  A  F  N  S  I  F  R  A  S  N  A  F  C  S  Y  S  V  N  P  R  R  S  D  E  I  N  A  S  I  P  F  L  P  S  L  T  R  D  A  K  N  G  S  S  V  R  S  D  *  T  *  E  H  S  *  T  S  A  S  P  S  R  A  R  S  E  D  S  T  N  L  A  A  A  Y  A  I  D  S  V  A  D  P  A  P  A  F  A  S  T  T  S  V  P  A  F  W  I  L  T  V  S  S  C  T  S  S  S  V  K  V  V  D  G  L  V  F  D  S  N  G  R  I  V  I  P  A  C  P  P  I  T  G  T  S  T  S  M  S  F  R  F  F  F  C  A  T  N  V  F  A  L  T  T  S  R  V  V  T  P  K  S  F  L  G  S  Y  T  P  F  C  F  R  T  S  A  A  I  G  T  V  E  L  T  G  L  L  I  M  W  I  K  A  S  G  Q  L </second_frame>
            <third_frame>   K  R  I  K  G  L  V  S  S  N  H  A  K  I  V  M  L  R  I  F  S  Y  S  *  S  K  L  N  S  F  S  K  H  S  L  F  V  F  E  H  K  L  S  L  S  Q  C  *  L  S  T  L  S  L  E  L  L  M  P  S  V  H  T  Q  L  I  H  G  D  Q  T  K  S  M  P  R  F  H  S  F  L  V  *  L  V  M  Q  R  M  E  V  P  S  G  Q  I  E  R  K  N  T  R  K  H  Q  H  H  R  Q  G  H  E  V  R  I  Q  Q  I  *  L  Q  H  M  P  L  T  V  L  Q  I  L  L  Q  P  L  L  Q  R  P  R  S  Q  R  F  G  S  S  R  L  V  P  A  L  L  R  P  *  K  *  L  M  V  L  S  L  T  A  M  A  E  L  L  S  L  H  A  H  Q  S  R  G  R  Q  R  Q  *  V  S  G  F  S  S  A  R  R  M  C  L  L  *  Q  R  P  G  W  *  H  Q  R  V  F  *  D  H  T  H  P  F  A  S  E  P  R  Q  Q  S  A  L  W  S  *  L  D  C  *  *  C  G  *  R  H  L  G  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0037E15.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52744" stop="53169"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>426</number_coding_nucleotides>
                  <number_encoded_amino_acids>142</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSASPSRARSEDSTNLAAAYAIDSVADPAPAFASTTSVPAFWILTVSSCTSSSVKVVDGLVFDSNGRIVIPACPPITGTSTSMSFRFFFCATNVFALTTSRVVTPKSFLGSYTPFCFRTSAAIGTVELTGLLIMWIKASGQL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="58647" PGL_stop="59341"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58647" e_stop="59050"/>
            <exon e_start="59153" e_stop="59341"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.986" e_score="0.943"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.943">
            <gDNA_exon_boundary e_start="58647" e_stop="59050" e_length="404"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.986">
            <gDNA_intron_boundary i_start="59051" i_stop="59152" i_length="102"/>
          </intron>
          <exon e_serial="2" e_score="0.974">
            <gDNA_exon_boundary e_start="59153" e_stop="59341" e_length="189"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58647" stop="59050"/>
              <exon start="59153" stop="59341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607633" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAGACAAAGTGGTTGAAGTGTTGAAATACAATGTAAGGTTTCTTCAAGGTGAGGTGAATGAAATTATGTGTATGAGGGAATATGAGAGTCAAGTCAATGCACAAGAGATGATCATATTTGCATTGAAAGAAGCAGAATGGAAGAAGGAAAAGAAGAAGCTAAAAGAGGAAGTGAAGAAGTTGAAGAAAAACTTGGAAGAAAAAGATGAAGAAGACAAGTGTAAAGCTATAGAGAATTTGTGTGTAAAAGAAGATAAAGAGTGGCATGAATTAGCAACAAGTTATTTGTTGGAGCAAATTAGGAATGAAGAAGCTAGAAGAGATGAAGCAATAGAGAAGTGGAAACAACTTTATTTTGCTATCAAGATTGAGCTTGATGAACTTATTCATAGGACAAATCAAG : GAAGAGGACTATGTTGGAAAATAGAACAAATGGAATTATTAGAGGAGATGCATAAAGAGTTGAAAGAAAAAGAGGAAAAAATTGCACTTCTAAAAGAGGAAATAGCTTCAAAGGAACAACAAGAGCTCAAGAGGGAAAGGGAAGTTGACATTTTAAGGCAAAGTTTGAAAATCATGAGCTATAATATGA</gDNA_template>
            <first_frame> K  R  Q  S  G  *  S  V  E  I  Q  C  K  V  S  S  R  *  G  E  *  N  Y  V  Y  E  G  I  *  E  S  S  Q  C  T  R  D  D  H  I  C  I  E  R  S  R  M  E  E  G  K  E  E  A  K  R  G  S  E  E  V  E  E  K  L  G  R  K  R  *  R  R  Q  V  *  S  Y  R  E  F  V  C  K  R  R  *  R  V  A  *  I  S  N  K  L  F  V  G  A  N  *  E  *  R  S  *  K  R  *  S  N  R  E  V  E  T  T  L  F  C  Y  Q  D  *  A  *  *  T  Y  S  *  D  K  S  R :   K  R  T  M  L  E  N  R  T  N  G  I  I  R  G  D  A  *  R  V  E  R  K  R  G  K  N  C  T  S  K  R  G  N  S  F  K  G  T  T  R  A  Q  E  G  K  G  S  *  H  F  K  A  K  F  E  N  H  E  L  *  Y   </first_frame>
            <second_frame>  K  D  K  V  V  E  V  L  K  Y  N  V  R  F  L  Q  G  E  V  N  E  I  M  C  M  R  E  Y  E  S  Q  V  N  A  Q  E  M  I  I  F  A  L  K  E  A  E  W  K  K  E  K  K  K  L  K  E  E  V  K  K  L  K  K  N  L  E  E  K  D  E  E  D  K  C  K  A  I  E  N  L  C  V  K  E  D  K  E  W  H  E  L  A  T  S  Y  L  L  E  Q  I  R  N  E  E  A  R  R  D  E  A  I  E  K  W  K  Q  L  Y  F  A  I  K  I  E  L  D  E  L  I  H  R  T  N  Q   : G  R  G  L  C  W  K  I  E  Q  M  E  L  L  E  E  M  H  K  E  L  K  E  K  E  E  K  I  A  L  L  K  E  E  I  A  S  K  E  Q  Q  E  L  K  R  E  R  E  V  D  I  L  R  Q  S  L  K  I  M  S  Y  N  M  </second_frame>
            <third_frame>   K  T  K  W  L  K  C  *  N  T  M  *  G  F  F  K  V  R  *  M  K  L  C  V  *  G  N  M  R  V  K  S  M  H  K  R  *  S  Y  L  H  *  K  K  Q  N  G  R  R  K  R  R  S  *  K  R  K  *  R  S  *  R  K  T  W  K  K  K  M  K  K  T  S  V  K  L  *  R  I  C  V  *  K  K  I  K  S  G  M  N  *  Q  Q  V  I  C  W  S  K  L  G  M  K  K  L  E  E  M  K  Q  *  R  S  G  N  N  F  I  L  L  S  R  L  S  L  M  N  L  F  I  G  Q  I  K  :  E  E  D  Y  V  G  K  *  N  K  W  N  Y  *  R  R  C  I  K  S  *  K  K  K  R  K  K  L  H  F  *  K  R  K  *  L  Q  R  N  N  K  S  S  R  G  K  G  K  L  T  F  *  G  K  V  *  K  S  *  A  I  I  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0037E15.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58648" stop="59050"/>
                    <exon start="59153" stop="59340"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDKVVEVLKYNVRFLQGEVNEIMCMREYESQVNAQEMIIFALKEAEWKKEKKKLKEEVKKLKKNLEEKDEEDKCKAIENLCVKEDKEWHELATSYLLEQIRNEEARRDEAIEKWKQLYFAIKIELDELIHRTNQGRGLCWKIEQMELLEEMHKELKEKEEKIALLKEEIASKEQQELKREREVDILRQSLKIMSYNM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="61656" PGL_stop="60232"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61656" e_stop="61214"/>
            <exon e_start="60798" e_stop="60718"/>
            <exon e_start="60266" e_stop="60232"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="61656" e_stop="61214" e_length="443"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.933">
            <gDNA_intron_boundary i_start="61213" i_stop="60799" i_length="415"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60798" e_stop="60718" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="60717" i_stop="60267" i_length="451"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60266" e_stop="60232" e_length="35"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61656" stop="61214"/>
              <exon start="60798" stop="60718"/>
              <exon start="60266" stop="60232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256030" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGATGTTCTCTCTCGGTCTCTCCTATGGAGGTGGCTTGTCATAAATGAAGTGTGAAACTCTTGAACATGCTATTGAATATGCATTGGTGCGTTGTCTAACATGTCAGACCAACTTTTAGCAAGTTTGAGCCATAATCAGATGCCTTATCACATTGTTTGCCGATAGTTCATGGGAATTTCTTGCCTGTTCTTCTATTGTGACGTGGTGAACGGCTGTAACTAAATCACTTTCGCCTGCTTTGGAATCATACTGAGAGCTTAATTTTGTTAAATTCTGAGTGACTCTATATAATTAAGTTGCTTCTTATATTGTAGAAAGTTAAGGACAGCTGGAGGGTTGTAAATCACAGAGATATAATACCAACAGTTCCTCGCTTGATGGGCTACTGCCATGTTGCTCAACCTGTTTATTTGGCAGCTGGAGATCCGCAAAACACAATG : GATAATGTGGAACTCTTGGAAGATGGTTACCAAGGTGATGTTATCGGAGAGGCCACACCTGATGTTATTGTCAGTGAATTT : ATGAAAGGTGAAAAAGAACTTATTGAGAAAATACT</gDNA_template>
            <first_frame> F  D  V  L  S  R  S  L  L  W  R  W  L  V  I  N  E  V  *  N  S  *  T  C  Y  *  I  C  I  G  A  L  S  N  M  S  D  Q  L  L  A  S  L  S  H  N  Q  M  P  Y  H  I  V  C  R  *  F  M  G  I  S  C  L  F  F  Y  C  D  V  V  N  G  C  N  *  I  T  F  A  C  F  G  I  I  L  R  A  *  F  C  *  I  L  S  D  S  I  *  L  S  C  F  L  Y  C  R  K  L  R  T  A  G  G  L  *  I  T  E  I  *  Y  Q  Q  F  L  A  *  W  A  T  A  M  L  L  N  L  F  I  W  Q  L  E  I  R  K  T  Q  W :   I  M  W  N  S  W  K  M  V  T  K  V  M  L  S  E  R  P  H  L  M  L  L  S  V  N  L :   *  K  V  K  K  N  L  L  R  K  Y  </first_frame>
            <second_frame>  L  M  F  S  L  G  L  S  Y  G  G  G  L  S  *  M  K  C  E  T  L  E  H  A  I  E  Y  A  L  V  R  C  L  T  C  Q  T  N  F  *  Q  V  *  A  I  I  R  C  L  I  T  L  F  A  D  S  S  W  E  F  L  A  C  S  S  I  V  T  W  *  T  A  V  T  K  S  L  S  P  A  L  E  S  Y  *  E  L  N  F  V  K  F  *  V  T  L  Y  N  *  V  A  S  Y  I  V  E  S  *  G  Q  L  E  G  C  K  S  Q  R  Y  N  T  N  S  S  S  L  D  G  L  L  P  C  C  S  T  C  L  F  G  S  W  R  S  A  K  H  N   : G  *  C  G  T  L  G  R  W  L  P  R  *  C  Y  R  R  G  H  T  *  C  Y  C  Q  *  I   : Y  E  R  *  K  R  T  Y  *  E  N  T </second_frame>
            <third_frame>   *  C  S  L  S  V  S  P  M  E  V  A  C  H  K  *  S  V  K  L  L  N  M  L  L  N  M  H  W  C  V  V  *  H  V  R  P  T  F  S  K  F  E  P  *  S  D  A  L  S  H  C  L  P  I  V  H  G  N  F  L  P  V  L  L  L  *  R  G  E  R  L  *  L  N  H  F  R  L  L  W  N  H  T  E  S  L  I  L  L  N  S  E  *  L  Y  I  I  K  L  L  L  I  L  *  K  V  K  D  S  W  R  V  V  N  H  R  D  I  I  P  T  V  P  R  L  M  G  Y  C  H  V  A  Q  P  V  Y  L  A  A  G  D  P  Q  N  T  M  :  D  N  V  E  L  L  E  D  G  Y  Q  G  D  V  I  G  E  A  T  P  D  V  I  V  S  E  F  :  M  K  G  E  K  E  L  I  E  K  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0037E15.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61339" stop="61214"/>
                    <exon start="60798" stop="60718"/>
                    <exon start="60266" stop="60234"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVKDSWRVVNHRDIIPTVPRLMGYCHVAQPVYLAAGDPQNTMDNVELLEDGYQGDVIGEATPDVIVSEFMKGEKELIEKI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="69678" PGL_stop="61982"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69678" e_stop="69431"/>
            <exon e_start="68181" e_stop="68123"/>
            <exon e_start="67781" e_stop="67700"/>
            <exon e_start="67545" e_stop="67478"/>
            <exon e_start="66968" e_stop="66899"/>
            <exon e_start="66254" e_stop="66173"/>
            <exon e_start="65799" e_stop="65735"/>
            <exon e_start="65514" e_stop="64492"/>
            <exon e_start="64378" e_stop="64316"/>
            <exon e_start="64236" e_stop="64190"/>
            <exon e_start="63475" e_stop="63430"/>
            <exon e_start="63321" e_stop="63242"/>
            <exon e_start="62871" e_stop="62758"/>
            <exon e_start="62008" e_stop="61982"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.956" e_score="0.927"/>
          <exon-intron don_prob="0.971" acc_prob="0.850" e_score="0.949"/>
          <exon-intron don_prob="0.962" acc_prob="0.985" e_score="0.890"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="0.971"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.770" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.765" acc_prob="0.844" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="0.910" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.896" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.608" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.972" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="69678" e_stop="69431" e_length="248"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.956">
            <gDNA_intron_boundary i_start="69430" i_stop="68182" i_length="1249"/>
          </intron>
          <exon e_serial="2" e_score="0.949">
            <gDNA_exon_boundary e_start="68181" e_stop="68123" e_length="59"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="0.850">
            <gDNA_intron_boundary i_start="68122" i_stop="67782" i_length="341"/>
          </intron>
          <exon e_serial="3" e_score="0.890">
            <gDNA_exon_boundary e_start="67781" e_stop="67700" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="0.962" acc_prob="0.985">
            <gDNA_intron_boundary i_start="67699" i_stop="67546" i_length="154"/>
          </intron>
          <exon e_serial="4" e_score="0.971">
            <gDNA_exon_boundary e_start="67545" e_stop="67478" e_length="68"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67477" i_stop="66969" i_length="509"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="66968" e_stop="66899" e_length="70"/>
          </exon>
          <intron i_serial="5" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="66898" i_stop="66255" i_length="644"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="66254" e_stop="66173" e_length="82"/>
          </exon>
          <intron i_serial="6" don_prob="0.770" acc_prob="0.981">
            <gDNA_intron_boundary i_start="66172" i_stop="65800" i_length="373"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="65799" e_stop="65735" e_length="65"/>
          </exon>
          <intron i_serial="7" don_prob="0.765" acc_prob="0.844">
            <gDNA_intron_boundary i_start="65734" i_stop="65515" i_length="220"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="65514" e_stop="64492" e_length="1023"/>
          </exon>
          <intron i_serial="8" don_prob="0.942" acc_prob="0.895">
            <gDNA_intron_boundary i_start="64491" i_stop="64379" i_length="113"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="64378" e_stop="64316" e_length="63"/>
          </exon>
          <intron i_serial="9" don_prob="0.910" acc_prob="0.985">
            <gDNA_intron_boundary i_start="64315" i_stop="64237" i_length="79"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="64236" e_stop="64190" e_length="47"/>
          </exon>
          <intron i_serial="10" don_prob="0.960" acc_prob="0.896">
            <gDNA_intron_boundary i_start="64189" i_stop="63476" i_length="714"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="63475" e_stop="63430" e_length="46"/>
          </exon>
          <intron i_serial="11" don_prob="0.971" acc_prob="0.608">
            <gDNA_intron_boundary i_start="63429" i_stop="63322" i_length="108"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="63321" e_stop="63242" e_length="80"/>
          </exon>
          <intron i_serial="12" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="63241" i_stop="62872" i_length="370"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="62871" e_stop="62758" e_length="114"/>
          </exon>
          <intron i_serial="13" don_prob="0.991" acc_prob="0.972">
            <gDNA_intron_boundary i_start="62757" i_stop="62009" i_length="749"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="62008" e_stop="61982" e_length="27"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69678" stop="69431"/>
              <exon start="68181" stop="68123"/>
              <exon start="67781" stop="67700"/>
              <exon start="67545" stop="67478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67497" stop="67478"/>
              <exon start="66968" stop="66899"/>
              <exon start="66254" stop="66173"/>
              <exon start="65799" stop="65735"/>
              <exon start="65514" stop="65139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66941" stop="66899"/>
              <exon start="66254" stop="66173"/>
              <exon start="65799" stop="65735"/>
              <exon start="65514" stop="64921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66195" stop="66173"/>
              <exon start="65799" stop="65735"/>
              <exon start="65514" stop="64947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65479" stop="64964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65148" stop="64522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65045" stop="64492"/>
              <exon start="64378" stop="64372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64765" stop="64492"/>
              <exon start="64378" stop="64316"/>
              <exon start="64236" stop="64203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64718" stop="64492"/>
              <exon start="64378" stop="64316"/>
              <exon start="64236" stop="64190"/>
              <exon start="63475" stop="63430"/>
              <exon start="63321" stop="63242"/>
              <exon start="62871" stop="62758"/>
              <exon start="62008" stop="61982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64715" stop="64492"/>
              <exon start="64378" stop="64316"/>
              <exon start="64236" stop="64190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260252" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTCAAGAACCCCAATTCAGTTTCTTTCTCAAAAAAGCTTTTTTTCTCAAGAAAAGTTAATGGGTTGTTTAGTTATTCTAAATTTGGTGCAAAAGATTCATTCTTTTGTTGTAGTCAAACTAGTGGTGAAATTTTACCCCTTTCATCAGCTCAGAAGGAGAAGGAGACTAGTGAAAGGCCTCCTTTTGATATCAATTTGGCTGTCATTCTTGCTGGTTTTGCTTTTGAAGCTTATACTAGTCCTCCA : GACAATGTCGGAAAGCTTGAGGTGGATGCGGCTAATTGCAAAACCATATTTCTTTCAGA : GTCATTTGTGCGTGAAATTTATGATGGCCAGTTGTTCATAAAGCTAAAGAAAGGTCTCAATTTACCTGCTATGGATCTTTGG : GGAACGAGTGATCCGTATGTGGTGTTACAGCTAGATAGTCAAGTTGTCAAAAGCAAGGTGAAATGGGG : GACAAAAGAGCCAATGTGGAATGAGGAGTTTGCTTTAAATATTAAGCAGCCACCTCTGTATGATCTTCAG : ATTGCAGCTTGGGATGCAAATCTGGTGACTCCACATAAACGCATGGGAAATGCAGCAGTTAATTTGGAACATCTCTGTGATG : GAGATTCTCATAAACTGCTGGTTGATTTGGATGGAATGGGCGGTGGTGGGAAGATAGAGATAGAG : ATTAAGTACAAGAGTTTTGAGAAAATTGAAGAAGAAAAGAAGTGGTGGAACATCCCAATCATTACAGAATTTCTAAGAAAAAACGGGTTTGAGTCTGCTTTGAAGACAATTCTTGGTTCCGAGACTGTTCAAGCTCGACAATTTGTACAGTTTGCGTTTGGACAGATGAAGCTACTTAATGATGCATATAATGATTCAAATAGCAGCAGCAGTCCTGTCCTGGAATCAGATGTACTACCGGAGTCGCAGCAATCATCCAACTTGGATGACTCAAGCATGCCCCCAGCATCAGAAATCTCAAATAATTTGAAAGACACCAAAGTTGATGGTGAAGTGAAGCTTAATCGTGATGGAAGTGACGTAACCGATGAACATGATTCCCCTGGTACTAAAATTTTAGAGAGCTTTCAATCAGATAAACATTTCTGGAAGAATTTTGCTGATACCGTCAATCAAAAAGTTGTTCAAAGACTTGGTCTCCCTGCTCCTGAGAAAATAAAGTGGGATAATCTTGACTTGTTAAATAAGATTGGATTGCAATCACGAAAAGACGCGGATGCAAGTTATGTTGAATCTGGTCTTGCAACTCCTGATAAACGAGAAAATGTTAATGGTAGTGCATCAACTGAATCACCTATTCTTAATAACATTCAGTCATCACTTCCAGATATCAAGAAGGTGACACAAGACTTATTGCGTCAAACTGATACCATTTTGGGAGCATTGATGGTTCTAAATGCCACAGTTTCTCAATTCAACAAAGGAGCAGGCCTTTTCGGAAAGGGTGATGCTAAAGAAGATTCTTCAACTGGACTGGAAAATGACATCCTTTTATATCCCATGAATAAAGATGGAATAGTGTTGGATGAGAAGAAAGCTGAGGAGATGAAGTCTCTTTTCTCAACAGCGGAGACTGCCATGGAAGCTTGGGCACTGCTAGCTACTTCATTGGGACATCCGACATTCATCAAATCTGAATTTGACAAATTATGCTTCTTAGATAATGAGTCAACTGACACAGAG : GTAGCGCTCTGGCGTGATTCAGCAAGGAAACGGTTAGTTGTTGCTTTCAGGGGAACAGAACAA : ACAAAATGGAAGGATCTTGTGACGGACTTGATGCTAGTTCCTGCAGG : GTTGAATCCTGAAAGGATAGGCGGGGACTTCAAGGAAGAAGTTCAG : GTTCACAGTGGTTTCCTAAGTGCATATGATTCAGTTAGGATTAGGCTCATCTCGCTTATCAAAAAAGCAATTGGCTACCA : GGATGATGATCTTGACACGCCAAACAAATGGCATGTTTACGTGACTGGCCATAGTCTTGGTGGTGCATTGGCTACTCTTCTCGCTCTTGAACTATCATCAAGTCAACTAGCTAA : GCGTGGAGCTATACGTGTGACCATGTA</gDNA_template>
            <first_frame> I  S  R  T  P  I  Q  F  L  S  Q  K  S  F  F  S  Q  E  K  L  M  G  C  L  V  I  L  N  L  V  Q  K  I  H  S  F  V  V  V  K  L  V  V  K  F  Y  P  F  H  Q  L  R  R  R  R  R  L  V  K  G  L  L  L  I  S  I  W  L  S  F  L  L  V  L  L  L  K  L  I  L  V  L  Q :   T  M  S  E  S  L  R  W  M  R  L  I  A  K  P  Y  F  F  Q   : S  H  L  C  V  K  F  M  M  A  S  C  S  *  S  *  R  K  V  S  I  Y  L  L  W  I  F  G :   E  R  V  I  R  M  W  C  Y  S  *  I  V  K  L  S  K  A  R  *  N  G   : G  Q  K  S  Q  C  G  M  R  S  L  L  *  I  L  S  S  H  L  C  M  I  F  R :   L  Q  L  G  M  Q  I  W  *  L  H  I  N  A  W  E  M  Q  Q  L  I  W  N  I  S  V  M  :  E  I  L  I  N  C  W  L  I  W  M  E  W  A  V  V  G  R  *  R  *  R :   L  S  T  R  V  L  R  K  L  K  K  K  R  S  G  G  T  S  Q  S  L  Q  N  F  *  E  K  T  G  L  S  L  L  *  R  Q  F  L  V  P  R  L  F  K  L  D  N  L  Y  S  L  R  L  D  R  *  S  Y  L  M  M  H  I  M  I  Q  I  A  A  A  V  L  S  W  N  Q  M  Y  Y  R  S  R  S  N  H  P  T  W  M  T  Q  A  C  P  Q  H  Q  K  S  Q  I  I  *  K  T  P  K  L  M  V  K  *  S  L  I  V  M  E  V  T  *  P  M  N  M  I  P  L  V  L  K  F  *  R  A  F  N  Q  I  N  I  S  G  R  I  L  L  I  P  S  I  K  K  L  F  K  D  L  V  S  L  L  L  R  K  *  S  G  I  I  L  T  C  *  I  R  L  D  C  N  H  E  K  T  R  M  Q  V  M  L  N  L  V  L  Q  L  L  I  N  E  K  M  L  M  V  V  H  Q  L  N  H  L  F  L  I  T  F  S  H  H  F  Q  I  S  R  R  *  H  K  T  Y  C  V  K  L  I  P  F  W  E  H  *  W  F  *  M  P  Q  F  L  N  S  T  K  E  Q  A  F  S  E  R  V  M  L  K  K  I  L  Q  L  D  W  K  M  T  S  F  Y  I  P  *  I  K  M  E  *  C  W  M  R  R  K  L  R  R  *  S  L  F  S  Q  Q  R  R  L  P  W  K  L  G  H  C  *  L  L  H  W  D  I  R  H  S  S  N  L  N  L  T  N  Y  A  S  *  I  M  S  Q  L  T  Q  R :   *  R  S  G  V  I  Q  Q  G  N  G  *  L  L  L  S  G  E  Q  N  K :   Q  N  G  R  I  L  *  R  T  *  C  *  F  L  Q   : G  *  I  L  K  G  *  A  G  T  S  R  K  K  F  R :   F  T  V  V  S  *  V  H  M  I  Q  L  G  L  G  S  S  R  L  S  K  K  Q  L  A  T   : R  M  M  I  L  T  R  Q  T  N  G  M  F  T  *  L  A  I  V  L  V  V  H  W  L  L  F  S  L  L  N  Y  H  Q  V  N  *  L   : S  V  E  L  Y  V  *  P  C  </first_frame>
            <second_frame>  F  Q  E  P  Q  F  S  F  F  L  K  K  A  F  F  L  K  K  S  *  W  V  V  *  L  F  *  I  W  C  K  R  F  I  L  L  L  *  S  N  *  W  *  N  F  T  P  F  I  S  S  E  G  E  G  D  *  *  K  A  S  F  *  Y  Q  F  G  C  H  S  C  W  F  C  F  *  S  L  Y  *  S  S   : R  Q  C  R  K  A  *  G  G  C  G  *  L  Q  N  H  I  S  F  R  :  V  I  C  A  *  N  L  *  W  P  V  V  H  K  A  K  E  R  S  Q  F  T  C  Y  G  S  L   : G  N  E  *  S  V  C  G  V  T  A  R  *  S  S  C  Q  K  Q  G  E  M  G  :  D  K  R  A  N  V  E  *  G  V  C  F  K  Y  *  A  A  T  S  V  *  S  S   : D  C  S  L  G  C  K  S  G  D  S  T  *  T  H  G  K  C  S  S  *  F  G  T  S  L  *  W :   R  F  S  *  T  A  G  *  F  G  W  N  G  R  W  W  E  D  R  D  R   : D  *  V  Q  E  F  *  E  N  *  R  R  K  E  V  V  E  H  P  N  H  Y  R  I  S  K  K  K  R  V  *  V  C  F  E  D  N  S  W  F  R  D  C  S  S  S  T  I  C  T  V  C  V  W  T  D  E  A  T  *  *  C  I  *  *  F  K  *  Q  Q  Q  S  C  P  G  I  R  C  T  T  G  V  A  A  I  I  Q  L  G  *  L  K  H  A  P  S  I  R  N  L  K  *  F  E  R  H  Q  S  *  W  *  S  E  A  *  S  *  W  K  *  R  N  R  *  T  *  F  P  W  Y  *  N  F  R  E  L  S  I  R  *  T  F  L  E  E  F  C  *  Y  R  Q  S  K  S  C  S  K  T  W  S  P  C  S  *  E  N  K  V  G  *  S  *  L  V  K  *  D  W  I  A  I  T  K  R  R  G  C  K  L  C  *  I  W  S  C  N  S  *  *  T  R  K  C  *  W  *  C  I  N  *  I  T  Y  S  *  *  H  S  V  I  T  S  R  Y  Q  E  G  D  T  R  L  I  A  S  N  *  Y  H  F  G  S  I  D  G  S  K  C  H  S  F  S  I  Q  Q  R  S  R  P  F  R  K  G  *  C  *  R  R  F  F  N  W  T  G  K  *  H  P  F  I  S  H  E  *  R  W  N  S  V  G  *  E  E  S  *  G  D  E  V  S  F  L  N  S  G  D  C  H  G  S  L  G  T  A  S  Y  F  I  G  T  S  D  I  H  Q  I  *  I  *  Q  I  M  L  L  R  *  *  V  N  *  H  R   : G  S  A  L  A  *  F  S  K  E  T  V  S  C  C  F  Q  G  N  R  T   : N  K  M  E  G  S  C  D  G  L  D  A  S  S  C  R  :  V  E  S  *  K  D  R  R  G  L  Q  G  R  S  S   : G  S  Q  W  F  P  K  C  I  *  F  S  *  D  *  A  H  L  A  Y  Q  K  S  N  W  L  P  :  G  *  *  S  *  H  A  K  Q  M  A  C  L  R  D  W  P  *  S  W  W  C  I  G  Y  S  S  R  S  *  T  I  I  K  S  T  S  *  :  A  W  S  Y  T  C  D  H  V </second_frame>
            <third_frame>   F  K  N  P  N  S  V  S  F  S  K  K  L  F  F  S  R  K  V  N  G  L  F  S  Y  S  K  F  G  A  K  D  S  F  F  C  C  S  Q  T  S  G  E  I  L  P  L  S  S  A  Q  K  E  K  E  T  S  E  R  P  P  F  D  I  N  L  A  V  I  L  A  G  F  A  F  E  A  Y  T  S  P  P  :  D  N  V  G  K  L  E  V  D  A  A  N  C  K  T  I  F  L  S  E :   S  F  V  R  E  I  Y  D  G  Q  L  F  I  K  L  K  K  G  L  N  L  P  A  M  D  L  W  :  G  T  S  D  P  Y  V  V  L  Q  L  D  S  Q  V  V  K  S  K  V  K  W  G :   T  K  E  P  M  W  N  E  E  F  A  L  N  I  K  Q  P  P  L  Y  D  L  Q  :  I  A  A  W  D  A  N  L  V  T  P  H  K  R  M  G  N  A  A  V  N  L  E  H  L  C  D   : G  D  S  H  K  L  L  V  D  L  D  G  M  G  G  G  G  K  I  E  I  E  :  I  K  Y  K  S  F  E  K  I  E  E  E  K  K  W  W  N  I  P  I  I  T  E  F  L  R  K  N  G  F  E  S  A  L  K  T  I  L  G  S  E  T  V  Q  A  R  Q  F  V  Q  F  A  F  G  Q  M  K  L  L  N  D  A  Y  N  D  S  N  S  S  S  S  P  V  L  E  S  D  V  L  P  E  S  Q  Q  S  S  N  L  D  D  S  S  M  P  P  A  S  E  I  S  N  N  L  K  D  T  K  V  D  G  E  V  K  L  N  R  D  G  S  D  V  T  D  E  H  D  S  P  G  T  K  I  L  E  S  F  Q  S  D  K  H  F  W  K  N  F  A  D  T  V  N  Q  K  V  V  Q  R  L  G  L  P  A  P  E  K  I  K  W  D  N  L  D  L  L  N  K  I  G  L  Q  S  R  K  D  A  D  A  S  Y  V  E  S  G  L  A  T  P  D  K  R  E  N  V  N  G  S  A  S  T  E  S  P  I  L  N  N  I  Q  S  S  L  P  D  I  K  K  V  T  Q  D  L  L  R  Q  T  D  T  I  L  G  A  L  M  V  L  N  A  T  V  S  Q  F  N  K  G  A  G  L  F  G  K  G  D  A  K  E  D  S  S  T  G  L  E  N  D  I  L  L  Y  P  M  N  K  D  G  I  V  L  D  E  K  K  A  E  E  M  K  S  L  F  S  T  A  E  T  A  M  E  A  W  A  L  L  A  T  S  L  G  H  P  T  F  I  K  S  E  F  D  K  L  C  F  L  D  N  E  S  T  D  T  E  :  V  A  L  W  R  D  S  A  R  K  R  L  V  V  A  F  R  G  T  E  Q  :  T  K  W  K  D  L  V  T  D  L  M  L  V  P  A  G :   L  N  P  E  R  I  G  G  D  F  K  E  E  V  Q  :  V  H  S  G  F  L  S  A  Y  D  S  V  R  I  R  L  I  S  L  I  K  K  A  I  G  Y  Q :   D  D  D  L  D  T  P  N  K  W  H  V  Y  V  T  G  H  S  L  G  G  A  L  A  T  L  L  A  L  E  L  S  S  S  Q  L  A  K :   R  G  A  I  R  V  T  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0037E15.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69676" stop="69431"/>
                    <exon start="68181" stop="68123"/>
                    <exon start="67781" stop="67700"/>
                    <exon start="67545" stop="67478"/>
                    <exon start="66968" stop="66899"/>
                    <exon start="66254" stop="66173"/>
                    <exon start="65799" stop="65735"/>
                    <exon start="65514" stop="64492"/>
                    <exon start="64378" stop="64316"/>
                    <exon start="64236" stop="64190"/>
                    <exon start="63475" stop="63430"/>
                    <exon start="63321" stop="63242"/>
                    <exon start="62871" stop="62758"/>
                    <exon start="62008" stop="61984"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2070</number_coding_nucleotides>
                  <number_encoded_amino_acids>690</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FKNPNSVSFSKKLFFSRKVNGLFSYSKFGAKDSFFCCSQTSGEILPLSSAQKEKETSERPPFDINLAVILAGFAFEAYTSPPDNVGKLEVDAANCKTIFLSESFVREIYDGQLFIKLKKGLNLPAMDLWGTSDPYVVLQLDSQVVKSKVKWGTKEPMWNEEFALNIKQPPLYDLQIAAWDANLVTPHKRMGNAAVNLEHLCDGDSHKLLVDLDGMGGGGKIEIEIKYKSFEKIEEEKKWWNIPIITEFLRKNGFESALKTILGSETVQARQFVQFAFGQMKLLNDAYNDSNSSSSPVLESDVLPESQQSSNLDDSSMPPASEISNNLKDTKVDGEVKLNRDGSDVTDEHDSPGTKILESFQSDKHFWKNFADTVNQKVVQRLGLPAPEKIKWDNLDLLNKIGLQSRKDADASYVESGLATPDKRENVNGSASTESPILNNIQSSLPDIKKVTQDLLRQTDTILGALMVLNATVSQFNKGAGLFGKGDAKEDSSTGLENDILLYPMNKDGIVLDEKKAEEMKSLFSTAETAMEAWALLATSLGHPTFIKSEFDKLCFLDNESTDTEVALWRDSARKRLVVAFRGTEQTKWKDLVTDLMLVPAGLNPERIGGDFKEEVQVHSGFLSAYDSVRIRLISLIKKAIGYQDDDLDTPNKWHVYVTGHSLGGALATLLALELSSSQLAKRGAIRVTM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="64297" e_stop="63242"/>
            <exon e_start="62871" e_stop="62787"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="0.938"/>
          <exon-only e_score="0.871"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="64297" e_stop="63242" e_length="1056"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="63241" i_stop="62872" i_length="370"/>
          </intron>
          <exon e_serial="2" e_score="0.871">
            <gDNA_exon_boundary e_start="62871" e_stop="62787" e_length="85"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64297" stop="63644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64014" stop="63265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63997" stop="63257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63997" stop="63697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63892" stop="63242"/>
              <exon start="62871" stop="62787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447921" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACATCTTTAAAACTTGTTGATTTAGCTTAGTTGTGGATAACCGGTTTTTCTTTTATCCAGACAAAATGGAAGGATCTTGTGACGGACTTGATGCTAGTTCCTGCAGGGTAAAATCACAAATCTGTACAAGCACAGGCTGGCTTTAGTTTTTCTTTCTTTCTCTACTTTGCCCTTCTGGTTTCTCTGTACTACTAAGATGTTTTTCCTATCACAGTAAACAGATTCTCCTTCCGTTCAATTTGTTTGTCTTACTTTCCTTTTTAATCCGTTTCGAAGAGAATGTCTCTTCCTTTTCTGAAAACTCTTTCATTCTAACTTTCCACATGACATGTTTAAGACCACAAGATTACAGTCATTTTGGTACATTCTACATATCATAATTTAAGACCACAGTATTCAAAAGTCTTCTTTACTTTCTTAAACTCTGTGCCAAGTCAAAACCAGTCAAACAAATCGAAACGGAGGGTGTAATTTTTTCTTCTCTAAGTCTCTGAAAGTGTACTTTTATTGAAATACAACTCTTTACTATGCTGAAAGAAACATTTCCTTTTTCTTAGAGGAATAGGAGTAGAAGATAACCTTCCATCCTACATTATTAAGTTTAGACTGCAAATACCATCATATCTAAAGGTTTTCCTGAAAAAAGTTTTAACTTCGAACATAATTTGAAACAACAAGAAATAGCCAAACACTTTGGTAATTTTGAATATGAATTGTACGTTCTTGCATCTTCATTATTCGGATGTTGTACAGAAACTTTAGATGGTTAAGCAACCACTGTCCATTTTATTTCGCATCCTGAGTTGTCTCCTACTCTGCAGGTTGAATCCTGAAAGGATAGGCGGGGACTTCAAGGAAGAAGTTCAGGTGGCACTGAAATTCTTACTTTTCTATCTCTTAGTGCCTGAAATATGAATGTATTCTACTTATATTTATAATTTTTCTAATTATCAGAACCAGAGATTATTTTTGTAGGTTCACAGTGGTTTCCTAAGTGCATATGATTCAGTTAGGATTAGGCTCATCTCGCTTATCAAAAAAGCAATTGGCTACCA : GGATGATGATCTTGACACGCCAAACAAATGGCATGTTTACGTGACTGGCCATAGTCTTGGTGGTGCATTGGCTACTCTTCTCGCT</gDNA_template>
            <first_frame> H  I  F  K  T  C  *  F  S  L  V  V  D  N  R  F  F  F  Y  P  D  K  M  E  G  S  C  D  G  L  D  A  S  S  C  R  V  K  S  Q  I  C  T  S  T  G  W  L  *  F  F  F  L  S  L  L  C  P  S  G  F  S  V  L  L  R  C  F  S  Y  H  S  K  Q  I  L  L  P  F  N  L  F  V  L  L  S  F  L  I  R  F  E  E  N  V  S  S  F  S  E  N  S  F  I  L  T  F  H  M  T  C  L  R  P  Q  D  Y  S  H  F  G  T  F  Y  I  S  *  F  K  T  T  V  F  K  S  L  L  Y  F  L  K  L  C  A  K  S  K  P  V  K  Q  I  E  T  E  G  V  I  F  S  S  L  S  L  *  K  C  T  F  I  E  I  Q  L  F  T  M  L  K  E  T  F  P  F  S  *  R  N  R  S  R  R  *  P  S  I  L  H  Y  *  V  *  T  A  N  T  I  I  S  K  G  F  P  E  K  S  F  N  F  E  H  N  L  K  Q  Q  E  I  A  K  H  F  G  N  F  E  Y  E  L  Y  V  L  A  S  S  L  F  G  C  C  T  E  T  L  D  G  *  A  T  T  V  H  F  I  S  H  P  E  L  S  P  T  L  Q  V  E  S  *  K  D  R  R  G  L  Q  G  R  S  S  G  G  T  E  I  L  T  F  L  S  L  S  A  *  N  M  N  V  F  Y  L  Y  L  *  F  F  *  L  S  E  P  E  I  I  F  V  G  S  Q  W  F  P  K  C  I  *  F  S  *  D  *  A  H  L  A  Y  Q  K  S  N  W  L  P  :  G  *  *  S  *  H  A  K  Q  M  A  C  L  R  D  W  P  *  S  W  W  C  I  G  Y  S  S  R  </first_frame>
            <second_frame>  T  S  L  K  L  V  D  L  A  *  L  W  I  T  G  F  S  F  I  Q  T  K  W  K  D  L  V  T  D  L  M  L  V  P  A  G  *  N  H  K  S  V  Q  A  Q  A  G  F  S  F  S  F  F  L  Y  F  A  L  L  V  S  L  Y  Y  *  D  V  F  P  I  T  V  N  R  F  S  F  R  S  I  C  L  S  Y  F  P  F  *  S  V  S  K  R  M  S  L  P  F  L  K  T  L  S  F  *  L  S  T  *  H  V  *  D  H  K  I  T  V  I  L  V  H  S  T  Y  H  N  L  R  P  Q  Y  S  K  V  F  F  T  F  L  N  S  V  P  S  Q  N  Q  S  N  K  S  K  R  R  V  *  F  F  L  L  *  V  S  E  S  V  L  L  L  K  Y  N  S  L  L  C  *  K  K  H  F  L  F  L  R  G  I  G  V  E  D  N  L  P  S  Y  I  I  K  F  R  L  Q  I  P  S  Y  L  K  V  F  L  K  K  V  L  T  S  N  I  I  *  N  N  K  K  *  P  N  T  L  V  I  L  N  M  N  C  T  F  L  H  L  H  Y  S  D  V  V  Q  K  L  *  M  V  K  Q  P  L  S  I  L  F  R  I  L  S  C  L  L  L  C  R  L  N  P  E  R  I  G  G  D  F  K  E  E  V  Q  V  A  L  K  F  L  L  F  Y  L  L  V  P  E  I  *  M  Y  S  T  Y  I  Y  N  F  S  N  Y  Q  N  Q  R  L  F  L  *  V  H  S  G  F  L  S  A  Y  D  S  V  R  I  R  L  I  S  L  I  K  K  A  I  G  Y  Q :   D  D  D  L  D  T  P  N  K  W  H  V  Y  V  T  G  H  S  L  G  G  A  L  A  T  L  L  A </second_frame>
            <third_frame>   H  L  *  N  L  L  I  *  L  S  C  G  *  P  V  F  L  L  S  R  Q  N  G  R  I  L  *  R  T  *  C  *  F  L  Q  G  K  I  T  N  L  Y  K  H  R  L  A  L  V  F  L  S  F  S  T  L  P  F  W  F  L  C  T  T  K  M  F  F  L  S  Q  *  T  D  S  P  S  V  Q  F  V  C  L  T  F  L  F  N  P  F  R  R  E  C  L  F  L  F  *  K  L  F  H  S  N  F  P  H  D  M  F  K  T  T  R  L  Q  S  F  W  Y  I  L  H  I  I  I  *  D  H  S  I  Q  K  S  S  L  L  S  *  T  L  C  Q  V  K  T  S  Q  T  N  R  N  G  G  C  N  F  F  F  S  K  S  L  K  V  Y  F  Y  *  N  T  T  L  Y  Y  A  E  R  N  I  S  F  F  L  E  E  *  E  *  K  I  T  F  H  P  T  L  L  S  L  D  C  K  Y  H  H  I  *  R  F  S  *  K  K  F  *  L  R  T  *  F  E  T  T  R  N  S  Q  T  L  W  *  F  *  I  *  I  V  R  S  C  I  F  I  I  R  M  L  Y  R  N  F  R  W  L  S  N  H  C  P  F  Y  F  A  S  *  V  V  S  Y  S  A  G  *  I  L  K  G  *  A  G  T  S  R  K  K  F  R  W  H  *  N  S  Y  F  S  I  S  *  C  L  K  Y  E  C  I  L  L  I  F  I  I  F  L  I  I  R  T  R  D  Y  F  C  R  F  T  V  V  S  *  V  H  M  I  Q  L  G  L  G  S  S  R  L  S  K  K  Q  L  A  T   : R  M  M  I  L  T  R  Q  T  N  G  M  F  T  *  L  A  I  V  L  V  V  H  W  L  L  F  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0037E15.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64150" stop="63917"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFLSLLCPSGFSVLLRCFSYHSKQILLPFNLFVLLSFLIRFEENVSSFSENSFILTFHMTCLRPQDYSHFGTFYIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="71934" PGL_stop="71498"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71934" e_stop="71498"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="71934" e_stop="71498" e_length="437"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71934" stop="71498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71925" stop="71498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221372" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGTGATCCATATGGCTCAAGGTGCAGTTGATGGAGTGAAGAACACACTTGGAATTGGATCAGACAAAAAGTGAAAAAGAGAAAATGAAATTAATTAATTAATTAATTAATTAATTAACACATTTATCAATTTATATATCTCAATTTTAATTAATTTTTCATTTAATTCTATGATTTTCACATATGCTTTAGATTATTAAGCATAAGTGAAAAAACATAATATTATTAGTTTGTGAGATCTCTCACCAAAAGAATTACAAAATTTAATTCTTATAAAGTGAGATGATTTTCATAGGTTTGGTTTAATTATTGTTTAACAATTCCATGCACCTTATATTGGTGTTATAGTGAATTTTGTTTTATTGATCGAGATTTCTCTCGTTAGAAATTCTCATTATAAGTACGTAATAAGAAAGTTTTATTTTGTTTTTGTTA</gDNA_template>
            <first_frame> A  S  D  P  Y  G  S  R  C  S  *  W  S  E  E  H  T  W  N  W  I  R  Q  K  V  K  K  R  K  *  N  *  L  I  N  *  L  I  N  *  H  I  Y  Q  F  I  Y  L  N  F  N  *  F  F  I  *  F  Y  D  F  H  I  C  F  R  L  L  S  I  S  E  K  T  *  Y  Y  *  F  V  R  S  L  T  K  R  I  T  K  F  N  S  Y  K  V  R  *  F  S  *  V  W  F  N  Y  C  L  T  I  P  C  T  L  Y  W  C  Y  S  E  F  C  F  I  D  R  D  F  S  R  *  K  F  S  L  *  V  R  N  K  K  V  L  F  C  F  C   </first_frame>
            <second_frame>  Q  V  I  H  M  A  Q  G  A  V  D  G  V  K  N  T  L  G  I  G  S  D  K  K  *  K  R  E  N  E  I  N  *  L  I  N  *  L  I  N  T  F  I  N  L  Y  I  S  I  L  I  N  F  S  F  N  S  M  I  F  T  Y  A  L  D  Y  *  A  *  V  K  K  H  N  I  I  S  L  *  D  L  S  P  K  E  L  Q  N  L  I  L  I  K  *  D  D  F  H  R  F  G  L  I  I  V  *  Q  F  H  A  P  Y  I  G  V  I  V  N  F  V  L  L  I  E  I  S  L  V  R  N  S  H  Y  K  Y  V  I  R  K  F  Y  F  V  F  V  </second_frame>
            <third_frame>   K  *  S  I  W  L  K  V  Q  L  M  E  *  R  T  H  L  E  L  D  Q  T  K  S  E  K  E  K  M  K  L  I  N  *  L  I  N  *  L  T  H  L  S  I  Y  I  S  Q  F  *  L  I  F  H  L  I  L  *  F  S  H  M  L  *  I  I  K  H  K  *  K  N  I  I  L  L  V  C  E  I  S  H  Q  K  N  Y  K  I  *  F  L  *  S  E  M  I  F  I  G  L  V  *  L  L  F  N  N  S  M  H  L  I  L  V  L  *  *  I  L  F  Y  *  S  R  F  L  S  L  E  I  L  I  I  S  T  *  *  E  S  F  I  L  F  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0037E15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="74282" PGL_stop="77000"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74282" e_stop="74981"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="74282" e_stop="74981" e_length="700"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74282" stop="74926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74286" stop="74832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74304" stop="74981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74309" stop="74781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590634" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGAGGTGTATTTACTACTGAATTATGTATCATTTCATTAAGACATAATGTCTAGACTTTAAAAAAACTACACGATGAACAGTTTTACAAACATTTAAGAACAACGATAACGAGCTATAAGATCCAGGTAACATGTTGAAAAACTTCATGTTAGCTAAAAGGATCAAATTAAAACAGTACTATTTGACAACGATTTGCTTAGTGCATTAGGGCTACTGCAGCTTCTTGTACTAACGGCTGAGTTATATGAACGAAATGCTCTGCTTCCCTCTCTACCTGTTCGCGGCATTTGTTAGCGTCTTTTCCTTCTTTCATTTTCTTCACAAAGGCAACGAATCGTCTCCAGTTATCAGGATGGAATAAGTCAGGATTCATCCTCAAGTATGTAAACGCGCTCATCTCTCTATCACCTGATTGATCGTTGATGCTCAACGAGGACGCTTGAAGGATCTGTTCATGAGCATAATCATCGTATCGTGGCAATGCATTCTCCCCAGCAAGTGGAACTTGAGCTTCCTGAGTTGCTAACGCCACCTGCCTAACCAACTTCTCAGGTGCACATTGTGCATCTTGTGGCTGCTCGTGGTCACGCATTTCAACACATGTGAAGTTGAAAACTGCACCGTGGCGGGCAAGCATTTGGGCGATGGGAAGGTAACCATCTCGGTTACGAGTGTTGTAGTATCCAGCAGTCAACTC</gDNA_template>
            <first_frame> E  E  V  Y  L  L  L  N  Y  V  S  F  H  *  D  I  M  S  R  L  *  K  N  Y  T  M  N  S  F  T  N  I  *  E  Q  R  *  R  A  I  R  S  R  *  H  V  E  K  L  H  V  S  *  K  D  Q  I  K  T  V  L  F  D  N  D  L  L  S  A  L  G  L  L  Q  L  L  V  L  T  A  E  L  Y  E  R  N  A  L  L  P  S  L  P  V  R  G  I  C  *  R  L  F  L  L  S  F  S  S  Q  R  Q  R  I  V  S  S  Y  Q  D  G  I  S  Q  D  S  S  S  S  M  *  T  R  S  S  L  Y  H  L  I  D  R  *  C  S  T  R  T  L  E  G  S  V  H  E  H  N  H  R  I  V  A  M  H  S  P  Q  Q  V  E  L  E  L  P  E  L  L  T  P  P  A  *  P  T  S  Q  V  H  I  V  H  L  V  A  A  R  G  H  A  F  Q  H  M  *  S  *  K  L  H  R  G  G  Q  A  F  G  R  W  E  G  N  H  L  G  Y  E  C  C  S  I  Q  Q  S  T  </first_frame>
            <second_frame>  K  R  C  I  Y  Y  *  I  M  Y  H  F  I  K  T  *  C  L  D  F  K  K  T  T  R  *  T  V  L  Q  T  F  K  N  N  D  N  E  L  *  D  P  G  N  M  L  K  N  F  M  L  A  K  R  I  K  L  K  Q  Y  Y  L  T  T  I  C  L  V  H  *  G  Y  C  S  F  L  Y  *  R  L  S  Y  M  N  E  M  L  C  F  P  L  Y  L  F  A  A  F  V  S  V  F  S  F  F  H  F  L  H  K  G  N  E  S  S  P  V  I  R  M  E  *  V  R  I  H  P  Q  V  C  K  R  A  H  L  S  I  T  *  L  I  V  D  A  Q  R  G  R  L  K  D  L  F  M  S  I  I  I  V  S  W  Q  C  I  L  P  S  K  W  N  L  S  F  L  S  C  *  R  H  L  P  N  Q  L  L  R  C  T  L  C  I  L  W  L  L  V  V  T  H  F  N  T  C  E  V  E  N  C  T  V  A  G  K  H  L  G  D  G  K  V  T  I  S  V  T  S  V  V  V  S  S  S  Q  L </second_frame>
            <third_frame>   R  G  V  F  T  T  E  L  C  I  I  S  L  R  H  N  V  *  T  L  K  K  L  H  D  E  Q  F  Y  K  H  L  R  T  T  I  T  S  Y  K  I  Q  V  T  C  *  K  T  S  C  *  L  K  G  S  N  *  N  S  T  I  *  Q  R  F  A  *  C  I  R  A  T  A  A  S  C  T  N  G  *  V  I  *  T  K  C  S  A  S  L  S  T  C  S  R  H  L  L  A  S  F  P  S  F  I  F  F  T  K  A  T  N  R  L  Q  L  S  G  W  N  K  S  G  F  I  L  K  Y  V  N  A  L  I  S  L  S  P  D  *  S  L  M  L  N  E  D  A  *  R  I  C  S  *  A  *  S  S  Y  R  G  N  A  F  S  P  A  S  G  T  *  A  S  *  V  A  N  A  T  C  L  T  N  F  S  G  A  H  C  A  S  C  G  C  S  W  S  R  I  S  T  H  V  K  L  K  T  A  P  W  R  A  S  I  W  A  M  G  R  *  P  S  R  L  R  V  L  *  Y  P  A  V  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0037E15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="74286" e_stop="74886"/>
            <exon e_start="76594" e_stop="77000"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.987"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="74286" e_stop="74886" e_length="601"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="74887" i_stop="76593" i_length="1707"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76594" e_stop="77000" e_length="407"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74286" stop="74832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74309" stop="74781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74809" stop="74886"/>
              <exon start="76594" stop="77000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726026" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGTGTATTTACTACTGAATTATGTATCATTTCATTAAGACATAATGTCTAGACTTTAAAAAAACTACACGATGAACAGTTTTACAAACATTTAAGAACAACGATAACGAGCTATAAGATCCAGGTAACATGTTGAAAAACTTCATGTTAGCTAAAAGGATCAAATTAAAACAGTACTATTTGACAACGATTTGCTTAGTGCATTAGGGCTACTGCAGCTTCTTGTACTAACGGCTGAGTTATATGAACGAAATGCTCTGCTTCCCTCTCTACCTGTTCGCGGCATTTGTTAGCGTCTTTTCCTTCTTTCATTTTCTTCACAAAGGCAACGAATCGTCTCCAGTTATCAGGATGGAATAAGTCAGGATTCATCCTCAAGTATGTAAACGCGCTCATCTCTCTATCACCTGATTGATCGTTGATGCTCAACGAGGACGCTTGAAGGATCTGTTCATGAGCATAATCATCGTATCGTGGCAATGCATTCTCCCCAGCAAGTGGAACTTGAGCTTCCTGAGTTGCTAACGCCACCTGCCTAACCAACTTCTCAGGTGCACATTGTGCATCTTGTGGCTGCTCGTGGTCACGCATTTCAACACAT : GTAAACTCGCATTCATCGCCTTTTTTCTATTCACAGTATGATCCGTTTTCACACTATCCAACGGCATCATAACAAACACCGGAACACCTTTCTCTTTCTCCGACGAATTCCTAACCTTATATTCTCTCTCAACTACCTCCTCTACCTGAGCCTCCATCAACGCTTGACACGCTACCGATAAATCCGGTCGCATTCCTCCTCCCATCATCGGACTCATCGGCGGCGACGGCGACGGCGACACCCTGTCAATTTCATTTCCTGTTTTTTGCACCGATACTTTTAAATTCGTCATCGGTGTTCTCCACATAGCTGATGTAGCTGAACTCCCCTTCGCCGGAACTTCGCATGAAACTCCACCGGTTTCCGCCGTGAGCGATGTTCCTGATAAGGCACCGATCTGGTGTGGC</gDNA_template>
            <first_frame> R  C  I  Y  Y  *  I  M  Y  H  F  I  K  T  *  C  L  D  F  K  K  T  T  R  *  T  V  L  Q  T  F  K  N  N  D  N  E  L  *  D  P  G  N  M  L  K  N  F  M  L  A  K  R  I  K  L  K  Q  Y  Y  L  T  T  I  C  L  V  H  *  G  Y  C  S  F  L  Y  *  R  L  S  Y  M  N  E  M  L  C  F  P  L  Y  L  F  A  A  F  V  S  V  F  S  F  F  H  F  L  H  K  G  N  E  S  S  P  V  I  R  M  E  *  V  R  I  H  P  Q  V  C  K  R  A  H  L  S  I  T  *  L  I  V  D  A  Q  R  G  R  L  K  D  L  F  M  S  I  I  I  V  S  W  Q  C  I  L  P  S  K  W  N  L  S  F  L  S  C  *  R  H  L  P  N  Q  L  L  R  C  T  L  C  I  L  W  L  L  V  V  T  H  F  N  T   : C  K  L  A  F  I  A  F  F  L  F  T  V  *  S  V  F  T  L  S  N  G  I  I  T  N  T  G  T  P  F  S  F  S  D  E  F  L  T  L  Y  S  L  S  T  T  S  S  T  *  A  S  I  N  A  *  H  A  T  D  K  S  G  R  I  P  P  P  I  I  G  L  I  G  G  D  G  D  G  D  T  L  S  I  S  F  P  V  F  C  T  D  T  F  K  F  V  I  G  V  L  H  I  A  D  V  A  E  L  P  F  A  G  T  S  H  E  T  P  P  V  S  A  V  S  D  V  P  D  K  A  P  I  W  C  G </first_frame>
            <second_frame>  G  V  F  T  T  E  L  C  I  I  S  L  R  H  N  V  *  T  L  K  K  L  H  D  E  Q  F  Y  K  H  L  R  T  T  I  T  S  Y  K  I  Q  V  T  C  *  K  T  S  C  *  L  K  G  S  N  *  N  S  T  I  *  Q  R  F  A  *  C  I  R  A  T  A  A  S  C  T  N  G  *  V  I  *  T  K  C  S  A  S  L  S  T  C  S  R  H  L  L  A  S  F  P  S  F  I  F  F  T  K  A  T  N  R  L  Q  L  S  G  W  N  K  S  G  F  I  L  K  Y  V  N  A  L  I  S  L  S  P  D  *  S  L  M  L  N  E  D  A  *  R  I  C  S  *  A  *  S  S  Y  R  G  N  A  F  S  P  A  S  G  T  *  A  S  *  V  A  N  A  T  C  L  T  N  F  S  G  A  H  C  A  S  C  G  C  S  W  S  R  I  S  T  H  :  V  N  S  H  S  S  P  F  F  Y  S  Q  Y  D  P  F  S  H  Y  P  T  A  S  *  Q  T  P  E  H  L  S  L  S  P  T  N  S  *  P  Y  I  L  S  Q  L  P  P  L  P  E  P  P  S  T  L  D  T  L  P  I  N  P  V  A  F  L  L  P  S  S  D  S  S  A  A  T  A  T  A  T  P  C  Q  F  H  F  L  F  F  A  P  I  L  L  N  S  S  S  V  F  S  T  *  L  M  *  L  N  S  P  S  P  E  L  R  M  K  L  H  R  F  P  P  *  A  M  F  L  I  R  H  R  S  G  V   </second_frame>
            <third_frame>   V  Y  L  L  L  N  Y  V  S  F  H  *  D  I  M  S  R  L  *  K  N  Y  T  M  N  S  F  T  N  I  *  E  Q  R  *  R  A  I  R  S  R  *  H  V  E  K  L  H  V  S  *  K  D  Q  I  K  T  V  L  F  D  N  D  L  L  S  A  L  G  L  L  Q  L  L  V  L  T  A  E  L  Y  E  R  N  A  L  L  P  S  L  P  V  R  G  I  C  *  R  L  F  L  L  S  F  S  S  Q  R  Q  R  I  V  S  S  Y  Q  D  G  I  S  Q  D  S  S  S  S  M  *  T  R  S  S  L  Y  H  L  I  D  R  *  C  S  T  R  T  L  E  G  S  V  H  E  H  N  H  R  I  V  A  M  H  S  P  Q  Q  V  E  L  E  L  P  E  L  L  T  P  P  A  *  P  T  S  Q  V  H  I  V  H  L  V  A  A  R  G  H  A  F  Q  H  M :   *  T  R  I  H  R  L  F  S  I  H  S  M  I  R  F  H  T  I  Q  R  H  H  N  K  H  R  N  T  F  L  F  L  R  R  I  P  N  L  I  F  S  L  N  Y  L  L  Y  L  S  L  H  Q  R  L  T  R  Y  R  *  I  R  S  H  S  S  S  H  H  R  T  H  R  R  R  R  R  R  R  H  P  V  N  F  I  S  C  F  L  H  R  Y  F  *  I  R  H  R  C  S  P  H  S  *  C  S  *  T  P  L  R  R  N  F  A  *  N  S  T  G  F  R  R  E  R  C  S  *  *  G  T  D  L  V  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0037E15.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76761" stop="77000"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HATDKSGRIPPPIIGLIGGDGDGDTLSISFPVFCTDTFKFVIGVLHIADVAELPFAGTSHETPPVSAVSDVPDKAPIWCG</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0037E15.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76708" stop="76902"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PYILSQLPPLPEPPSTLDTLPINPVAFLLPSSDSSAATATATPCQFHFLFFAPILLNSSSVFST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="77142" PGL_stop="74286"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77142" e_stop="76401"/>
            <exon e_start="75787" e_stop="75577"/>
            <exon e_start="75497" e_stop="75387"/>
            <exon e_start="75287" e_stop="74286"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="0.998"/>
          <exon-intron don_prob="0.967" acc_prob="0.799" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="77142" e_stop="76401" e_length="742"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="76400" i_stop="75788" i_length="613"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="75787" e_stop="75577" e_length="211"/>
          </exon>
          <intron i_serial="2" don_prob="0.967" acc_prob="0.799">
            <gDNA_intron_boundary i_start="75576" i_stop="75498" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="75497" e_stop="75387" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.962" acc_prob="0.999">
            <gDNA_intron_boundary i_start="75386" i_stop="75288" i_length="99"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="75287" e_stop="74286" e_length="1002"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77142" stop="76631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77142" stop="76694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77088" stop="76539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77033" stop="76458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76755" stop="76401"/>
              <exon start="75787" stop="75635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76670" stop="76504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76544" stop="76401"/>
              <exon start="75787" stop="75595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76517" stop="76401"/>
              <exon start="75787" stop="75577"/>
              <exon start="75497" stop="75387"/>
              <exon start="75287" stop="75056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76494" stop="76401"/>
              <exon start="75787" stop="75577"/>
              <exon start="75497" stop="75387"/>
              <exon start="75287" stop="74962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76485" stop="76401"/>
              <exon start="75787" stop="75577"/>
              <exon start="75497" stop="75387"/>
              <exon start="75287" stop="75194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76472" stop="76401"/>
              <exon start="75787" stop="75577"/>
              <exon start="75497" stop="75387"/>
              <exon start="75287" stop="75209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76472" stop="76401"/>
              <exon start="75787" stop="75580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75787" stop="75577"/>
              <exon start="75497" stop="75387"/>
              <exon start="75287" stop="75086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75780" stop="75577"/>
              <exon start="75497" stop="75387"/>
              <exon start="75287" stop="75094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75780" stop="75577"/>
              <exon start="75497" stop="75419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75751" stop="75577"/>
              <exon start="75497" stop="75387"/>
              <exon start="75287" stop="74973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75641" stop="75577"/>
              <exon start="75497" stop="75387"/>
              <exon start="75287" stop="74625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75441" stop="75387"/>
              <exon start="75287" stop="74662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75275" stop="74557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75226" stop="74294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75177" stop="74458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75053" stop="74296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74983" stop="74317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74941" stop="74287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74940" stop="74286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74940" stop="74387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74930" stop="74340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74913" stop="74286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74872" stop="74286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74702" stop="74286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74609" stop="74286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620265" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACAATTTCAACTCCTCCTTCTCCATTTTTCTCCATCAATTTGGTGAACAAAACAAAAAAAAAAATTAAAAAAAATTCATCATTTTTAATCTGCAAAAAAAAAAATTAGTTATAATATTATTATTATTATGGCAATGAGTCTGCCACACCAGATCGGTGCCTTATCAGGAACATCGCTCACGGCGGAAACCGGTGGAGTTTCATGCGAAGTTCCGGCGAAGGGGAGTTCAGCTACATCAGCTATGTGGAGAACACCGATGACGAATTTAAAAGTATCGGTGCAAAAAACAGGAAATGAAATTGACAGGGTGTCGCCGTCGCCGTCGCCGCCGATGAGTCCGATGATGGGAGGAGGAATGCGACCGGATTTATCGGTAGCGTGTCAAGCGTTGATGGAGGCTCAGGTAGAGGAGGTAGTTGAGAGAGAATATAAGGTTAGGAATTCGTCGGAGAAAGAGAAAGGTGTTCCGGTGTTTGTTATGATGCCGTTGGATAGTGTGAAAACGGATCATACTGTGAATAGAAAAAAGGCGATGAATGCGAGTTTACAGGCGTTGAAAAGCGCCGGTGTGGAAGGGATTATGATGGATGTGTGGTGGGGATTGGTGGAGAGAGATGCACCGGGAGAGTATAATTGGGGCGGTTATGCTGAGCTTATGGAAATGGCGAAAAAACATGGACTCAAAGTTCAAGCTGTGATGTCTTTCCATCAATGCGGTGGTAACGTCGGTGATTCCTGCAC : GATCCCTCTTCCGAGGTGGGTTGTTGAGGAGATGGAGAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTTCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTCTTAGGTGATACCATTGTG : GAAATTCAAGTCGGGATGGGTCCAGCTGGTGAGCTCCGTTATCCATCCTATCCCGAAAAAGATGGAATATGGAAGTTCCCTGGAATCGGTGCTTTTCAGTGTTATGATAAG : TACATGATCGGTAGCTTACAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTGAGTACAACAATTGGCCAGAAGATACAAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATACGGGGAGTTCTTCCTCACTTGGTATTCTCAAATGCTTTTGAACCATGGCGAGAGGATACTGCAATCATCCAAGGCGATATTCGAGGACAAAGGTGTGAAGATTTCAGTTAAGATTGCAGGTATCCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGTTGACTGCTGGATACTACAACACTCGTAACCGAGATGGTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACTGTTTTAATTTGATCCTTTTAGCTAACATGAAGTTTTTCAACATGTTACCTGGATCTTATAGCTCGTTATCGTTGTTCTTAAATGTTTGTAAAACTGTTCATCGTGTAGTTTTTTTAAAGTCTAGACATTATGTCTTAATGAAATGATACATAATTCAGTAGTAAATACACCT</gDNA_template>
            <first_frame> H  N  F  N  S  S  F  S  I  F  L  H  Q  F  G  E  Q  N  K  K  K  N  *  K  K  F  I  I  F  N  L  Q  K  K  K  L  V  I  I  L  L  L  L  W  Q  *  V  C  H  T  R  S  V  P  Y  Q  E  H  R  S  R  R  K  P  V  E  F  H  A  K  F  R  R  R  G  V  Q  L  H  Q  L  C  G  E  H  R  *  R  I  *  K  Y  R  C  K  K  Q  E  M  K  L  T  G  C  R  R  R  R  R  R  R  *  V  R  *  W  E  E  E  C  D  R  I  Y  R  *  R  V  K  R  *  W  R  L  R  *  R  R  *  L  R  E  N  I  R  L  G  I  R  R  R  K  R  K  V  F  R  C  L  L  *  C  R  W  I  V  *  K  R  I  I  L  *  I  E  K  R  R  *  M  R  V  Y  R  R  *  K  A  P  V  W  K  G  L  *  W  M  C  G  G  D  W  W  R  E  M  H  R  E  S  I  I  G  A  V  M  L  S  L  W  K  W  R  K  N  M  D  S  K  F  K  L  *  C  L  S  I  N  A  V  V  T  S  V  I  P  A   : R  S  L  F  R  G  G  L  L  R  R  W  R  R  I  Q  I  L  H  T  Q  I  S  G  E  G  G  I  L  N  M  Y  R  L  V  A  I  H  F  Q  F  L  K  E  G  L  L  F  N  A  I  L  I  S  *  E  G  L  E  I  D  L  R  I  S  *  V  I  P  L  W :   K  F  K  S  G  W  V  Q  L  V  S  S  V  I  H  P  I  P  K  K  M  E  Y  G  S  S  L  E  S  V  L  F  S  V  M  I  S :   T  *  S  V  A  Y  R  V  Q  R  K  H  L  V  S  L  N  G  D  T  P  V  Q  P  M  L  V  S  T  T  I  G  Q  K  I  Q  T  F  S  R  R  K  V  V  D  G  I  V  N  T  G  S  S  S  S  L  G  I  L  K  C  F  *  T  M  A  R  G  Y  C  N  H  P  R  R  Y  S  R  T  K  V  *  R  F  Q  L  R  L  Q  V  S  T  G  T  M  E  Q  G  P  M  P  L  S  *  L  L  D  T  T  T  L  V  T  E  M  V  T  F  P  S  P  K  C  L  P  A  T  V  Q  F  S  T  S  H  V  L  K  C  V  T  T  S  S  H  K  M  H  N  V  H  L  R  S  W  L  G  R  W  R  *  Q  L  R  K  L  K  F  H  L  L  G  R  M  H  C  H  D  T  M  I  M  L  M  N  R  S  F  K  R  P  R  *  A  S  T  I  N  Q  V  I  E  R  *  A  R  L  H  T  *  G  *  I  L  T  Y  S  I  L  I  T  G  D  D  S  L  P  L  *  R  K  *  K  K  E  K  T  L  T  N  A  A  N  R  *  R  G  K  Q  S  I  S  F  I  *  L  S  R  *  Y  K  K  L  Q  *  P  *  C  T  K  Q  I  V  V  K  *  Y  C  F  N  L  I  L  L  A  N  M  K  F  F  N  M  L  P  G  S  Y  S  S  L  S  L  F  L  N  V  C  K  T  V  H  R  V  V  F  L  K  S  R  H  Y  V  L  M  K  *  Y  I  I  Q  *  *  I  H   </first_frame>
            <second_frame>  T  I  S  T  P  P  S  P  F  F  S  I  N  L  V  N  K  T  K  K  K  I  K  K  N  S  S  F  L  I  C  K  K  K  N  *  L  *  Y  Y  Y  Y  Y  G  N  E  S  A  T  P  D  R  C  L  I  R  N  I  A  H  G  G  N  R  W  S  F  M  R  S  S  G  E  G  E  F  S  Y  I  S  Y  V  E  N  T  D  D  E  F  K  S  I  G  A  K  N  R  K  *  N  *  Q  G  V  A  V  A  V  A  A  D  E  S  D  D  G  R  R  N  A  T  G  F  I  G  S  V  S  S  V  D  G  G  S  G  R  G  G  S  *  E  R  I  *  G  *  E  F  V  G  E  R  E  R  C  S  G  V  C  Y  D  A  V  G  *  C  E  N  G  S  Y  C  E  *  K  K  G  D  E  C  E  F  T  G  V  E  K  R  R  C  G  R  D  Y  D  G  C  V  V  G  I  G  G  E  R  C  T  G  R  V  *  L  G  R  L  C  *  A  Y  G  N  G  E  K  T  W  T  Q  S  S  S  C  D  V  F  P  S  M  R  W  *  R  R  *  F  L  H  :  D  P  S  S  E  V  G  C  *  G  D  G  E  G  S  R  S  C  I  H  R  S  V  G  K  E  E  F  *  I  C  I  A  W  L  R  Y  T  S  S  S  *  R  K  D  S  C  S  M  L  F  *  F  H  E  R  V  *  R  *  I  *  E  S  L  R  *  Y  H  C   : G  N  S  S  R  D  G  S  S  W  *  A  P  L  S  I  L  S  R  K  R  W  N  M  E  V  P  W  N  R  C  F  S  V  L  *  *   : V  H  D  R  *  L  T  G  C  S  G  S  I  W  *  A  *  M  G  T  H  R  S  N  R  C  W  *  V  Q  Q  L  A  R  R  Y  K  L  F  Q  E  G  R  W  W  M  G  *  S  I  R  G  V  L  P  H  L  V  F  S  N  A  F  E  P  W  R  E  D  T  A  I  I  Q  G  D  I  R  G  Q  R  C  E  D  F  S  *  D  C  R  Y  P  L  A  L  W  N  K  V  P  C  P  *  V  D  C  W  I  L  Q  H  S  *  P  R  W  L  P  S  H  R  P  N  A  C  P  P  R  C  S  F  Q  L  H  M  C  *  N  A  *  P  R  A  A  T  R  C  T  M  C  T  *  E  V  G  *  A  G  G  V  S  N  S  G  S  S  S  S  T  C  W  G  E  C  I  A  T  I  R  *  L  C  S  *  T  D  P  S  S  V  L  V  E  H  Q  R  S  I  R  *  *  R  D  E  R  V  Y  I  L  E  D  E  S  *  L  I  P  S  *  *  L  E  T  I  R  C  L  C  E  E  N  E  R  R  K  R  R  *  Q  M  P  R  T  G  R  E  G  S  R  A  F  R  S  Y  N  S  A  V  S  T  R  S  C  S  S  P  N  A  L  S  K  S  L  S  N  S  T  V  L  I  *  S  F  *  L  T  *  S  F  S  T  C  Y  L  D  L  I  A  R  Y  R  C  S  *  M  F  V  K  L  F  I  V  *  F  F  *  S  L  D  I  M  S  *  *  N  D  T  *  F  S  S  K  Y  T  </second_frame>
            <third_frame>   Q  F  Q  L  L  L  L  H  F  S  P  S  I  W  *  T  K  Q  K  K  K  L  K  K  I  H  H  F  *  S  A  K  K  K  I  S  Y  N  I  I  I  I  M  A  M  S  L  P  H  Q  I  G  A  L  S  G  T  S  L  T  A  E  T  G  G  V  S  C  E  V  P  A  K  G  S  S  A  T  S  A  M  W  R  T  P  M  T  N  L  K  V  S  V  Q  K  T  G  N  E  I  D  R  V  S  P  S  P  S  P  P  M  S  P  M  M  G  G  G  M  R  P  D  L  S  V  A  C  Q  A  L  M  E  A  Q  V  E  E  V  V  E  R  E  Y  K  V  R  N  S  S  E  K  E  K  G  V  P  V  F  V  M  M  P  L  D  S  V  K  T  D  H  T  V  N  R  K  K  A  M  N  A  S  L  Q  A  L  K  S  A  G  V  E  G  I  M  M  D  V  W  W  G  L  V  E  R  D  A  P  G  E  Y  N  W  G  G  Y  A  E  L  M  E  M  A  K  K  H  G  L  K  V  Q  A  V  M  S  F  H  Q  C  G  G  N  V  G  D  S  C  T :   I  P  L  P  R  W  V  V  E  E  M  E  K  D  P  D  L  A  Y  T  D  Q  W  G  R  R  N  F  E  Y  V  S  L  G  C  D  T  L  P  V  L  K  G  R  T  P  V  Q  C  Y  S  D  F  M  R  G  F  R  D  R  F  E  N  L  L  G  D  T  I  V  :  E  I  Q  V  G  M  G  P  A  G  E  L  R  Y  P  S  Y  P  E  K  D  G  I  W  K  F  P  G  I  G  A  F  Q  C  Y  D  K  :  Y  M  I  G  S  L  Q  G  A  A  E  A  F  G  K  P  E  W  G  H  T  G  P  T  D  A  G  E  Y  N  N  W  P  E  D  T  N  F  F  K  K  E  G  G  G  W  D  S  Q  Y  G  E  F  F  L  T  W  Y  S  Q  M  L  L  N  H  G  E  R  I  L  Q  S  S  K  A  I  F  E  D  K  G  V  K  I  S  V  K  I  A  G  I  H  W  H  Y  G  T  R  S  H  A  P  E  L  T  A  G  Y  Y  N  T  R  N  R  D  G  Y  L  P  I  A  Q  M  L  A  R  H  G  A  V  F  N  F  T  C  V  E  M  R  D  H  E  Q  P  Q  D  A  Q  C  A  P  E  K  L  V  R  Q  V  A  L  A  T  Q  E  A  Q  V  P  L  A  G  E  N  A  L  P  R  Y  D  D  Y  A  H  E  Q  I  L  Q  A  S  S  L  S  I  N  D  Q  S  G  D  R  E  M  S  A  F  T  Y  L  R  M  N  P  D  L  F  H  P  D  N  W  R  R  F  V  A  F  V  K  K  M  K  E  G  K  D  A  N  K  C  R  E  Q  V  E  R  E  A  E  H  F  V  H  I  T  Q  P  L  V  Q  E  A  A  V  A  L  M  H  *  A  N  R  C  Q  I  V  L  F  *  F  D  P  F  S  *  H  E  V  F  Q  H  V  T  W  I  L  *  L  V  I  V  V  L  K  C  L  *  N  C  S  S  C  S  F  F  K  V  *  T  L  C  L  N  E  M  I  H  N  S  V  V  N  T  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0037E15.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77053" stop="76401"/>
                    <exon start="75787" stop="75577"/>
                    <exon start="75497" stop="75387"/>
                    <exon start="75287" stop="74481"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1779</number_coding_nucleotides>
                  <number_encoded_amino_acids>593</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SAKKKISYNIIIIMAMSLPHQIGALSGTSLTAETGGVSCEVPAKGSSATSAMWRTPMTNLKVSVQKTGNEIDRVSPSPSPPMSPMMGGGMRPDLSVACQALMEAQVEEVVEREYKVRNSSEKEKGVPVFVMMPLDSVKTDHTVNRKKAMNASLQALKSAGVEGIMMDVWWGLVERDAPGEYNWGGYAELMEMAKKHGLKVQAVMSFHQCGGNVGDSCTIPLPRWVVEEMEKDPDLAYTDQWGRRNFEYVSLGCDTLPVLKGRTPVQCYSDFMRGFRDRFENLLGDTIVEIQVGMGPAGELRYPSYPEKDGIWKFPGIGAFQCYDKYMIGSLQGAAEAFGKPEWGHTGPTDAGEYNNWPEDTNFFKKEGGGWDSQYGEFFLTWYSQMLLNHGERILQSSKAIFEDKGVKISVKIAGIHWHYGTRSHAPELTAGYYNTRNRDGYLPIAQMLARHGAVFNFTCVEMRDHEQPQDAQCAPEKLVRQVALATQEAQVPLAGENALPRYDDYAHEQILQASSLSINDQSGDREMSAFTYLRMNPDLFHPDNWRRFVAFVKKMKEGKDANKCREQVEREAEHFVHITQPLVQEAAVALMH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="75938" e_stop="75577"/>
            <exon e_start="75497" e_stop="75387"/>
            <exon e_start="75287" e_stop="74286"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.967" acc_prob="0.799" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75938" e_stop="75577" e_length="362"/>
          </exon>
          <intron i_serial="1" don_prob="0.967" acc_prob="0.799">
            <gDNA_intron_boundary i_start="75576" i_stop="75498" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="75497" e_stop="75387" e_length="111"/>
          </exon>
          <intron i_serial="2" don_prob="0.962" acc_prob="0.999">
            <gDNA_intron_boundary i_start="75386" i_stop="75288" i_length="99"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="75287" e_stop="74286" e_length="1002"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75938" stop="75577"/>
              <exon start="75497" stop="75387"/>
              <exon start="75287" stop="74894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75787" stop="75577"/>
              <exon start="75497" stop="75387"/>
              <exon start="75287" stop="75086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75780" stop="75577"/>
              <exon start="75497" stop="75387"/>
              <exon start="75287" stop="75094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75780" stop="75577"/>
              <exon start="75497" stop="75419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75751" stop="75577"/>
              <exon start="75497" stop="75387"/>
              <exon start="75287" stop="74973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75641" stop="75577"/>
              <exon start="75497" stop="75387"/>
              <exon start="75287" stop="74625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75441" stop="75387"/>
              <exon start="75287" stop="74662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75275" stop="74557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75226" stop="74294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75177" stop="74458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75053" stop="74296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74983" stop="74317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74941" stop="74287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74940" stop="74286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74940" stop="74387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74930" stop="74340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74913" stop="74286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74872" stop="74286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74702" stop="74286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74609" stop="74286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620265" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCAACCTGAATAGCATAAAATGGAATATGGAAGATTCATGAATAATTCAATTATCTTTGTTTAATTTTCATTCGAGTTCTGTTATGCGTTTTGATTTCTACTAATCGCGATGTATAGGCGTTGCTTAAGTAGATTTTTGAAATTTCAGGATCCCTCTTCCGAGGTGGGTTGTTGAGGAGATGGAGAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTTCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTCTTAGGTGATACCATTGTG : GAAATTCAAGTCGGGATGGGTCCAGCTGGTGAGCTCCGTTATCCATCCTATCCCGAAAAAGATGGAATATGGAAGTTCCCTGGAATCGGTGCTTTTCAGTGTTATGATAAG : TACATGATCGGTAGCTTACAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTGAGTACAACAATTGGCCAGAAGATACAAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATACGGGGAGTTCTTCCTCACTTGGTATTCTCAAATGCTTTTGAACCATGGCGAGAGGATACTGCAATCATCCAAGGCGATATTCGAGGACAAAGGTGTGAAGATTTCAGTTAAGATTGCAGGTATCCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGTTGACTGCTGGATACTACAACACTCGTAACCGAGATGGTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACTGTTTTAATTTGATCCTTTTAGCTAACATGAAGTTTTTCAACATGTTACCTGGATCTTATAGCTCGTTATCGTTGTTCTTAAATGTTTGTAAAACTGTTCATCGTGTAGTTTTTTTAAAGTCTAGACATTATGTCTTAATGAAATGATACATAATTCAGTAGTAAATACACCT</gDNA_template>
            <first_frame> E  S  T  *  I  A  *  N  G  I  W  K  I  H  E  *  F  N  Y  L  C  L  I  F  I  R  V  L  L  C  V  L  I  S  T  N  R  D  V  *  A  L  L  K  *  I  F  E  I  S  G  S  L  F  R  G  G  L  L  R  R  W  R  R  I  Q  I  L  H  T  Q  I  S  G  E  G  G  I  L  N  M  Y  R  L  V  A  I  H  F  Q  F  L  K  E  G  L  L  F  N  A  I  L  I  S  *  E  G  L  E  I  D  L  R  I  S  *  V  I  P  L  W :   K  F  K  S  G  W  V  Q  L  V  S  S  V  I  H  P  I  P  K  K  M  E  Y  G  S  S  L  E  S  V  L  F  S  V  M  I  S :   T  *  S  V  A  Y  R  V  Q  R  K  H  L  V  S  L  N  G  D  T  P  V  Q  P  M  L  V  S  T  T  I  G  Q  K  I  Q  T  F  S  R  R  K  V  V  D  G  I  V  N  T  G  S  S  S  S  L  G  I  L  K  C  F  *  T  M  A  R  G  Y  C  N  H  P  R  R  Y  S  R  T  K  V  *  R  F  Q  L  R  L  Q  V  S  T  G  T  M  E  Q  G  P  M  P  L  S  *  L  L  D  T  T  T  L  V  T  E  M  V  T  F  P  S  P  K  C  L  P  A  T  V  Q  F  S  T  S  H  V  L  K  C  V  T  T  S  S  H  K  M  H  N  V  H  L  R  S  W  L  G  R  W  R  *  Q  L  R  K  L  K  F  H  L  L  G  R  M  H  C  H  D  T  M  I  M  L  M  N  R  S  F  K  R  P  R  *  A  S  T  I  N  Q  V  I  E  R  *  A  R  L  H  T  *  G  *  I  L  T  Y  S  I  L  I  T  G  D  D  S  L  P  L  *  R  K  *  K  K  E  K  T  L  T  N  A  A  N  R  *  R  G  K  Q  S  I  S  F  I  *  L  S  R  *  Y  K  K  L  Q  *  P  *  C  T  K  Q  I  V  V  K  *  Y  C  F  N  L  I  L  L  A  N  M  K  F  F  N  M  L  P  G  S  Y  S  S  L  S  L  F  L  N  V  C  K  T  V  H  R  V  V  F  L  K  S  R  H  Y  V  L  M  K  *  Y  I  I  Q  *  *  I  H   </first_frame>
            <second_frame>  N  Q  P  E  *  H  K  M  E  Y  G  R  F  M  N  N  S  I  I  F  V  *  F  S  F  E  F  C  Y  A  F  *  F  L  L  I  A  M  Y  R  R  C  L  S  R  F  L  K  F  Q  D  P  S  S  E  V  G  C  *  G  D  G  E  G  S  R  S  C  I  H  R  S  V  G  K  E  E  F  *  I  C  I  A  W  L  R  Y  T  S  S  S  *  R  K  D  S  C  S  M  L  F  *  F  H  E  R  V  *  R  *  I  *  E  S  L  R  *  Y  H  C   : G  N  S  S  R  D  G  S  S  W  *  A  P  L  S  I  L  S  R  K  R  W  N  M  E  V  P  W  N  R  C  F  S  V  L  *  *   : V  H  D  R  *  L  T  G  C  S  G  S  I  W  *  A  *  M  G  T  H  R  S  N  R  C  W  *  V  Q  Q  L  A  R  R  Y  K  L  F  Q  E  G  R  W  W  M  G  *  S  I  R  G  V  L  P  H  L  V  F  S  N  A  F  E  P  W  R  E  D  T  A  I  I  Q  G  D  I  R  G  Q  R  C  E  D  F  S  *  D  C  R  Y  P  L  A  L  W  N  K  V  P  C  P  *  V  D  C  W  I  L  Q  H  S  *  P  R  W  L  P  S  H  R  P  N  A  C  P  P  R  C  S  F  Q  L  H  M  C  *  N  A  *  P  R  A  A  T  R  C  T  M  C  T  *  E  V  G  *  A  G  G  V  S  N  S  G  S  S  S  S  T  C  W  G  E  C  I  A  T  I  R  *  L  C  S  *  T  D  P  S  S  V  L  V  E  H  Q  R  S  I  R  *  *  R  D  E  R  V  Y  I  L  E  D  E  S  *  L  I  P  S  *  *  L  E  T  I  R  C  L  C  E  E  N  E  R  R  K  R  R  *  Q  M  P  R  T  G  R  E  G  S  R  A  F  R  S  Y  N  S  A  V  S  T  R  S  C  S  S  P  N  A  L  S  K  S  L  S  N  S  T  V  L  I  *  S  F  *  L  T  *  S  F  S  T  C  Y  L  D  L  I  A  R  Y  R  C  S  *  M  F  V  K  L  F  I  V  *  F  F  *  S  L  D  I  M  S  *  *  N  D  T  *  F  S  S  K  Y  T  </second_frame>
            <third_frame>   I  N  L  N  S  I  K  W  N  M  E  D  S  *  I  I  Q  L  S  L  F  N  F  H  S  S  S  V  M  R  F  D  F  Y  *  S  R  C  I  G  V  A  *  V  D  F  *  N  F  R  I  P  L  P  R  W  V  V  E  E  M  E  K  D  P  D  L  A  Y  T  D  Q  W  G  R  R  N  F  E  Y  V  S  L  G  C  D  T  L  P  V  L  K  G  R  T  P  V  Q  C  Y  S  D  F  M  R  G  F  R  D  R  F  E  N  L  L  G  D  T  I  V  :  E  I  Q  V  G  M  G  P  A  G  E  L  R  Y  P  S  Y  P  E  K  D  G  I  W  K  F  P  G  I  G  A  F  Q  C  Y  D  K  :  Y  M  I  G  S  L  Q  G  A  A  E  A  F  G  K  P  E  W  G  H  T  G  P  T  D  A  G  E  Y  N  N  W  P  E  D  T  N  F  F  K  K  E  G  G  G  W  D  S  Q  Y  G  E  F  F  L  T  W  Y  S  Q  M  L  L  N  H  G  E  R  I  L  Q  S  S  K  A  I  F  E  D  K  G  V  K  I  S  V  K  I  A  G  I  H  W  H  Y  G  T  R  S  H  A  P  E  L  T  A  G  Y  Y  N  T  R  N  R  D  G  Y  L  P  I  A  Q  M  L  A  R  H  G  A  V  F  N  F  T  C  V  E  M  R  D  H  E  Q  P  Q  D  A  Q  C  A  P  E  K  L  V  R  Q  V  A  L  A  T  Q  E  A  Q  V  P  L  A  G  E  N  A  L  P  R  Y  D  D  Y  A  H  E  Q  I  L  Q  A  S  S  L  S  I  N  D  Q  S  G  D  R  E  M  S  A  F  T  Y  L  R  M  N  P  D  L  F  H  P  D  N  W  R  R  F  V  A  F  V  K  K  M  K  E  G  K  D  A  N  K  C  R  E  Q  V  E  R  E  A  E  H  F  V  H  I  T  Q  P  L  V  Q  E  A  A  V  A  L  M  H  *  A  N  R  C  Q  I  V  L  F  *  F  D  P  F  S  *  H  E  V  F  Q  H  V  T  W  I  L  *  L  V  I  V  V  L  K  C  L  *  N  C  S  S  C  S  F  F  K  V  *  T  L  C  L  N  E  M  I  H  N  S  V  V  N  T  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0037E15.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75795" stop="75577"/>
                    <exon start="75497" stop="75387"/>
                    <exon start="75287" stop="74481"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1134</number_coding_nucleotides>
                  <number_encoded_amino_acids>378</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFRIPLPRWVVEEMEKDPDLAYTDQWGRRNFEYVSLGCDTLPVLKGRTPVQCYSDFMRGFRDRFENLLGDTIVEIQVGMGPAGELRYPSYPEKDGIWKFPGIGAFQCYDKYMIGSLQGAAEAFGKPEWGHTGPTDAGEYNNWPEDTNFFKKEGGGWDSQYGEFFLTWYSQMLLNHGERILQSSKAIFEDKGVKISVKIAGIHWHYGTRSHAPELTAGYYNTRNRDGYLPIAQMLARHGAVFNFTCVEMRDHEQPQDAQCAPEKLVRQVALATQEAQVPLAGENALPRYDDYAHEQILQASSLSINDQSGDREMSAFTYLRMNPDLFHPDNWRRFVAFVKKMKEGKDANKCREQVEREAEHFVHITQPLVQEAAVALMH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="75511" e_stop="74286"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="75511" e_stop="74286" e_length="1226"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75511" stop="74955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75297" stop="74834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75275" stop="74557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75226" stop="74294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75177" stop="74458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75053" stop="74296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74983" stop="74317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74941" stop="74287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74940" stop="74286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74940" stop="74387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74930" stop="74340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74913" stop="74286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74872" stop="74286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74702" stop="74286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74609" stop="74286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620265" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACGTGTGATATAGGAAATTCAAGTCGGGATGGGTCCAGCTGGTGAGCTCCGTTATCCATCCTATCCCGAAAAAGATGGAATATGGAAGTTCCCTGGAATCGGTGCTTTTCAGTGTTATGATAAGGTATAAAGCAAGTTCTGTTTTCTATGGTGTGTTTTAGTGTTTAACGTCGTCATTATTACTGATGATTTGTTCTGTTAAATGTATTGTATCGCGTTGCAGTACATGATCGGTAGCTTACAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTGAGTACAACAATTGGCCAGAAGATACAAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATACGGGGAGTTCTTCCTCACTTGGTATTCTCAAATGCTTTTGAACCATGGCGAGAGGATACTGCAATCATCCAAGGCGATATTCGAGGACAAAGGTGTGAAGATTTCAGTTAAGATTGCAGGTATCCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGTTGACTGCTGGATACTACAACACTCGTAACCGAGATGGTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACTGTTTTAATTTGATCCTTTTAGCTAACATGAAGTTTTTCAACATGTTACCTGGATCTTATAGCTCGTTATCGTTGTTCTTAAATGTTTGTAAAACTGTTCATCGTGTAGTTTTTTTAAAGTCTAGACATTATGTCTTAATGAAATGATACATAATTCAGTAGTAAATACACCT</gDNA_template>
            <first_frame> D  V  *  Y  R  K  F  K  S  G  W  V  Q  L  V  S  S  V  I  H  P  I  P  K  K  M  E  Y  G  S  S  L  E  S  V  L  F  S  V  M  I  R  Y  K  A  S  S  V  F  Y  G  V  F  *  C  L  T  S  S  L  L  L  M  I  C  S  V  K  C  I  V  S  R  C  S  T  *  S  V  A  Y  R  V  Q  R  K  H  L  V  S  L  N  G  D  T  P  V  Q  P  M  L  V  S  T  T  I  G  Q  K  I  Q  T  F  S  R  R  K  V  V  D  G  I  V  N  T  G  S  S  S  S  L  G  I  L  K  C  F  *  T  M  A  R  G  Y  C  N  H  P  R  R  Y  S  R  T  K  V  *  R  F  Q  L  R  L  Q  V  S  T  G  T  M  E  Q  G  P  M  P  L  S  *  L  L  D  T  T  T  L  V  T  E  M  V  T  F  P  S  P  K  C  L  P  A  T  V  Q  F  S  T  S  H  V  L  K  C  V  T  T  S  S  H  K  M  H  N  V  H  L  R  S  W  L  G  R  W  R  *  Q  L  R  K  L  K  F  H  L  L  G  R  M  H  C  H  D  T  M  I  M  L  M  N  R  S  F  K  R  P  R  *  A  S  T  I  N  Q  V  I  E  R  *  A  R  L  H  T  *  G  *  I  L  T  Y  S  I  L  I  T  G  D  D  S  L  P  L  *  R  K  *  K  K  E  K  T  L  T  N  A  A  N  R  *  R  G  K  Q  S  I  S  F  I  *  L  S  R  *  Y  K  K  L  Q  *  P  *  C  T  K  Q  I  V  V  K  *  Y  C  F  N  L  I  L  L  A  N  M  K  F  F  N  M  L  P  G  S  Y  S  S  L  S  L  F  L  N  V  C  K  T  V  H  R  V  V  F  L  K  S  R  H  Y  V  L  M  K  *  Y  I  I  Q  *  *  I  H   </first_frame>
            <second_frame>  T  C  D  I  G  N  S  S  R  D  G  S  S  W  *  A  P  L  S  I  L  S  R  K  R  W  N  M  E  V  P  W  N  R  C  F  S  V  L  *  *  G  I  K  Q  V  L  F  S  M  V  C  F  S  V  *  R  R  H  Y  Y  *  *  F  V  L  L  N  V  L  Y  R  V  A  V  H  D  R  *  L  T  G  C  S  G  S  I  W  *  A  *  M  G  T  H  R  S  N  R  C  W  *  V  Q  Q  L  A  R  R  Y  K  L  F  Q  E  G  R  W  W  M  G  *  S  I  R  G  V  L  P  H  L  V  F  S  N  A  F  E  P  W  R  E  D  T  A  I  I  Q  G  D  I  R  G  Q  R  C  E  D  F  S  *  D  C  R  Y  P  L  A  L  W  N  K  V  P  C  P  *  V  D  C  W  I  L  Q  H  S  *  P  R  W  L  P  S  H  R  P  N  A  C  P  P  R  C  S  F  Q  L  H  M  C  *  N  A  *  P  R  A  A  T  R  C  T  M  C  T  *  E  V  G  *  A  G  G  V  S  N  S  G  S  S  S  S  T  C  W  G  E  C  I  A  T  I  R  *  L  C  S  *  T  D  P  S  S  V  L  V  E  H  Q  R  S  I  R  *  *  R  D  E  R  V  Y  I  L  E  D  E  S  *  L  I  P  S  *  *  L  E  T  I  R  C  L  C  E  E  N  E  R  R  K  R  R  *  Q  M  P  R  T  G  R  E  G  S  R  A  F  R  S  Y  N  S  A  V  S  T  R  S  C  S  S  P  N  A  L  S  K  S  L  S  N  S  T  V  L  I  *  S  F  *  L  T  *  S  F  S  T  C  Y  L  D  L  I  A  R  Y  R  C  S  *  M  F  V  K  L  F  I  V  *  F  F  *  S  L  D  I  M  S  *  *  N  D  T  *  F  S  S  K  Y  T  </second_frame>
            <third_frame>   R  V  I  *  E  I  Q  V  G  M  G  P  A  G  E  L  R  Y  P  S  Y  P  E  K  D  G  I  W  K  F  P  G  I  G  A  F  Q  C  Y  D  K  V  *  S  K  F  C  F  L  W  C  V  L  V  F  N  V  V  I  I  T  D  D  L  F  C  *  M  Y  C  I  A  L  Q  Y  M  I  G  S  L  Q  G  A  A  E  A  F  G  K  P  E  W  G  H  T  G  P  T  D  A  G  E  Y  N  N  W  P  E  D  T  N  F  F  K  K  E  G  G  G  W  D  S  Q  Y  G  E  F  F  L  T  W  Y  S  Q  M  L  L  N  H  G  E  R  I  L  Q  S  S  K  A  I  F  E  D  K  G  V  K  I  S  V  K  I  A  G  I  H  W  H  Y  G  T  R  S  H  A  P  E  L  T  A  G  Y  Y  N  T  R  N  R  D  G  Y  L  P  I  A  Q  M  L  A  R  H  G  A  V  F  N  F  T  C  V  E  M  R  D  H  E  Q  P  Q  D  A  Q  C  A  P  E  K  L  V  R  Q  V  A  L  A  T  Q  E  A  Q  V  P  L  A  G  E  N  A  L  P  R  Y  D  D  Y  A  H  E  Q  I  L  Q  A  S  S  L  S  I  N  D  Q  S  G  D  R  E  M  S  A  F  T  Y  L  R  M  N  P  D  L  F  H  P  D  N  W  R  R  F  V  A  F  V  K  K  M  K  E  G  K  D  A  N  K  C  R  E  Q  V  E  R  E  A  E  H  F  V  H  I  T  Q  P  L  V  Q  E  A  A  V  A  L  M  H  *  A  N  R  C  Q  I  V  L  F  *  F  D  P  F  S  *  H  E  V  F  Q  H  V  T  W  I  L  *  L  V  I  V  V  L  K  C  L  *  N  C  S  S  C  S  F  F  K  V  *  T  L  C  L  N  E  M  I  H  N  S  V  V  N  T  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0037E15.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75308" stop="74481"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>825</number_coding_nucleotides>
                  <number_encoded_amino_acids>275</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MYCIALQYMIGSLQGAAEAFGKPEWGHTGPTDAGEYNNWPEDTNFFKKEGGGWDSQYGEFFLTWYSQMLLNHGERILQSSKAIFEDKGVKISVKIAGIHWHYGTRSHAPELTAGYYNTRNRDGYLPIAQMLARHGAVFNFTCVEMRDHEQPQDAQCAPEKLVRQVALATQEAQVPLAGENALPRYDDYAHEQILQASSLSINDQSGDREMSAFTYLRMNPDLFHPDNWRRFVAFVKKMKEGKDANKCREQVEREAEHFVHITQPLVQEAAVALMH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="75511" e_stop="75387"/>
            <exon e_start="75287" e_stop="74286"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.962" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75511" e_stop="75387" e_length="125"/>
          </exon>
          <intron i_serial="1" don_prob="0.962" acc_prob="0.999">
            <gDNA_intron_boundary i_start="75386" i_stop="75288" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="75287" e_stop="74286" e_length="1002"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75511" stop="75387"/>
              <exon start="75287" stop="74566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75441" stop="75387"/>
              <exon start="75287" stop="74662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75275" stop="74557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75226" stop="74294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75177" stop="74458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75053" stop="74296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74983" stop="74317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74941" stop="74287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74940" stop="74286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74940" stop="74387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74930" stop="74340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74913" stop="74286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74872" stop="74286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74702" stop="74286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74609" stop="74286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620265" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACGTGTGATATAGGAAATTCAAGTCGGGATGGGTCCAGCTGGTGAGCTCCGTTATCCATCCTATCCCGAAAAAGATGGAATATGGAAGTTCCCTGGAATCGGTGCTTTTCAGTGTTATGATAAG : TACATGATCGGTAGCTTACAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTGAGTACAACAATTGGCCAGAAGATACAAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATACGGGGAGTTCTTCCTCACTTGGTATTCTCAAATGCTTTTGAACCATGGCGAGAGGATACTGCAATCATCCAAGGCGATATTCGAGGACAAAGGTGTGAAGATTTCAGTTAAGATTGCAGGTATCCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGTTGACTGCTGGATACTACAACACTCGTAACCGAGATGGTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACTGTTTTAATTTGATCCTTTTAGCTAACATGAAGTTTTTCAACATGTTACCTGGATCTTATAGCTCGTTATCGTTGTTCTTAAATGTTTGTAAAACTGTTCATCGTGTAGTTTTTTTAAAGTCTAGACATTATGTCTTAATGAAATGATACATAATTCAGTAGTAAATACACCT</gDNA_template>
            <first_frame> D  V  *  Y  R  K  F  K  S  G  W  V  Q  L  V  S  S  V  I  H  P  I  P  K  K  M  E  Y  G  S  S  L  E  S  V  L  F  S  V  M  I  S :   T  *  S  V  A  Y  R  V  Q  R  K  H  L  V  S  L  N  G  D  T  P  V  Q  P  M  L  V  S  T  T  I  G  Q  K  I  Q  T  F  S  R  R  K  V  V  D  G  I  V  N  T  G  S  S  S  S  L  G  I  L  K  C  F  *  T  M  A  R  G  Y  C  N  H  P  R  R  Y  S  R  T  K  V  *  R  F  Q  L  R  L  Q  V  S  T  G  T  M  E  Q  G  P  M  P  L  S  *  L  L  D  T  T  T  L  V  T  E  M  V  T  F  P  S  P  K  C  L  P  A  T  V  Q  F  S  T  S  H  V  L  K  C  V  T  T  S  S  H  K  M  H  N  V  H  L  R  S  W  L  G  R  W  R  *  Q  L  R  K  L  K  F  H  L  L  G  R  M  H  C  H  D  T  M  I  M  L  M  N  R  S  F  K  R  P  R  *  A  S  T  I  N  Q  V  I  E  R  *  A  R  L  H  T  *  G  *  I  L  T  Y  S  I  L  I  T  G  D  D  S  L  P  L  *  R  K  *  K  K  E  K  T  L  T  N  A  A  N  R  *  R  G  K  Q  S  I  S  F  I  *  L  S  R  *  Y  K  K  L  Q  *  P  *  C  T  K  Q  I  V  V  K  *  Y  C  F  N  L  I  L  L  A  N  M  K  F  F  N  M  L  P  G  S  Y  S  S  L  S  L  F  L  N  V  C  K  T  V  H  R  V  V  F  L  K  S  R  H  Y  V  L  M  K  *  Y  I  I  Q  *  *  I  H   </first_frame>
            <second_frame>  T  C  D  I  G  N  S  S  R  D  G  S  S  W  *  A  P  L  S  I  L  S  R  K  R  W  N  M  E  V  P  W  N  R  C  F  S  V  L  *  *   : V  H  D  R  *  L  T  G  C  S  G  S  I  W  *  A  *  M  G  T  H  R  S  N  R  C  W  *  V  Q  Q  L  A  R  R  Y  K  L  F  Q  E  G  R  W  W  M  G  *  S  I  R  G  V  L  P  H  L  V  F  S  N  A  F  E  P  W  R  E  D  T  A  I  I  Q  G  D  I  R  G  Q  R  C  E  D  F  S  *  D  C  R  Y  P  L  A  L  W  N  K  V  P  C  P  *  V  D  C  W  I  L  Q  H  S  *  P  R  W  L  P  S  H  R  P  N  A  C  P  P  R  C  S  F  Q  L  H  M  C  *  N  A  *  P  R  A  A  T  R  C  T  M  C  T  *  E  V  G  *  A  G  G  V  S  N  S  G  S  S  S  S  T  C  W  G  E  C  I  A  T  I  R  *  L  C  S  *  T  D  P  S  S  V  L  V  E  H  Q  R  S  I  R  *  *  R  D  E  R  V  Y  I  L  E  D  E  S  *  L  I  P  S  *  *  L  E  T  I  R  C  L  C  E  E  N  E  R  R  K  R  R  *  Q  M  P  R  T  G  R  E  G  S  R  A  F  R  S  Y  N  S  A  V  S  T  R  S  C  S  S  P  N  A  L  S  K  S  L  S  N  S  T  V  L  I  *  S  F  *  L  T  *  S  F  S  T  C  Y  L  D  L  I  A  R  Y  R  C  S  *  M  F  V  K  L  F  I  V  *  F  F  *  S  L  D  I  M  S  *  *  N  D  T  *  F  S  S  K  Y  T  </second_frame>
            <third_frame>   R  V  I  *  E  I  Q  V  G  M  G  P  A  G  E  L  R  Y  P  S  Y  P  E  K  D  G  I  W  K  F  P  G  I  G  A  F  Q  C  Y  D  K  :  Y  M  I  G  S  L  Q  G  A  A  E  A  F  G  K  P  E  W  G  H  T  G  P  T  D  A  G  E  Y  N  N  W  P  E  D  T  N  F  F  K  K  E  G  G  G  W  D  S  Q  Y  G  E  F  F  L  T  W  Y  S  Q  M  L  L  N  H  G  E  R  I  L  Q  S  S  K  A  I  F  E  D  K  G  V  K  I  S  V  K  I  A  G  I  H  W  H  Y  G  T  R  S  H  A  P  E  L  T  A  G  Y  Y  N  T  R  N  R  D  G  Y  L  P  I  A  Q  M  L  A  R  H  G  A  V  F  N  F  T  C  V  E  M  R  D  H  E  Q  P  Q  D  A  Q  C  A  P  E  K  L  V  R  Q  V  A  L  A  T  Q  E  A  Q  V  P  L  A  G  E  N  A  L  P  R  Y  D  D  Y  A  H  E  Q  I  L  Q  A  S  S  L  S  I  N  D  Q  S  G  D  R  E  M  S  A  F  T  Y  L  R  M  N  P  D  L  F  H  P  D  N  W  R  R  F  V  A  F  V  K  K  M  K  E  G  K  D  A  N  K  C  R  E  Q  V  E  R  E  A  E  H  F  V  H  I  T  Q  P  L  V  Q  E  A  A  V  A  L  M  H  *  A  N  R  C  Q  I  V  L  F  *  F  D  P  F  S  *  H  E  V  F  Q  H  V  T  W  I  L  *  L  V  I  V  V  L  K  C  L  *  N  C  S  S  C  S  F  F  K  V  *  T  L  C  L  N  E  M  I  H  N  S  V  V  N  T  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0037E15.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75497" stop="75387"/>
                    <exon start="75287" stop="74481"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>915</number_coding_nucleotides>
                  <number_encoded_amino_acids>305</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIQVGMGPAGELRYPSYPEKDGIWKFPGIGAFQCYDKYMIGSLQGAAEAFGKPEWGHTGPTDAGEYNNWPEDTNFFKKEGGGWDSQYGEFFLTWYSQMLLNHGERILQSSKAIFEDKGVKISVKIAGIHWHYGTRSHAPELTAGYYNTRNRDGYLPIAQMLARHGAVFNFTCVEMRDHEQPQDAQCAPEKLVRQVALATQEAQVPLAGENALPRYDDYAHEQILQASSLSINDQSGDREMSAFTYLRMNPDLFHPDNWRRFVAFVKKMKEGKDANKCREQVEREAEHFVHITQPLVQEAAVALMH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="77142" e_stop="76524"/>
            <exon e_start="74911" e_stop="74286"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.998"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="77142" e_stop="76524" e_length="619"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="76523" i_stop="74912" i_length="1612"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="74911" e_stop="74286" e_length="626"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77142" stop="76631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77142" stop="76694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77088" stop="76539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76802" stop="76524"/>
              <exon start="74911" stop="74696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74872" stop="74286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74702" stop="74286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74609" stop="74286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620265" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACAATTTCAACTCCTCCTTCTCCATTTTTCTCCATCAATTTGGTGAACAAAACAAAAAAAAAAATTAAAAAAAATTCATCATTTTTAATCTGCAAAAAAAAAAATTAGTTATAATATTATTATTATTATGGCAATGAGTCTGCCACACCAGATCGGTGCCTTATCAGGAACATCGCTCACGGCGGAAACCGGTGGAGTTTCATGCGAAGTTCCGGCGAAGGGGAGTTCAGCTACATCAGCTATGTGGAGAACACCGATGACGAATTTAAAAGTATCGGTGCAAAAAACAGGAAATGAAATTGACAGGGTGTCGCCGTCGCCGTCGCCGCCGATGAGTCCGATGATGGGAGGAGGAATGCGACCGGATTTATCGGTAGCGTGTCAAGCGTTGATGGAGGCTCAGGTAGAGGAGGTAGTTGAGAGAGAATATAAGGTTAGGAATTCGTCGGAGAAAGAGAAAGGTGTTCCGGTGTTTGTTATGATGCCGTTGGATAGTGTGAAAACGGATCATACTGTGAATAGAAAAAAGGCGATGAATGCGAGTTTACAGGCGTTGAAAAGCGCCGGTGTGGAAGGGATTATGATGGATGTGTGGTGGGGATTGGTGGAGAGAGATGC : GCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACTGTTTTAATTTGATCCTTTTAGCTAACATGAAGTTTTTCAACATGTTACCTGGATCTTATAGCTCGTTATCGTTGTTCTTAAATGTTTGTAAAACTGTTCATCGTGTAGTTTTTTTAAAGTCTAGACATTATGTCTTAATGAAATGATACATAATTCAGTAGTAAATACACCT</gDNA_template>
            <first_frame> H  N  F  N  S  S  F  S  I  F  L  H  Q  F  G  E  Q  N  K  K  K  N  *  K  K  F  I  I  F  N  L  Q  K  K  K  L  V  I  I  L  L  L  L  W  Q  *  V  C  H  T  R  S  V  P  Y  Q  E  H  R  S  R  R  K  P  V  E  F  H  A  K  F  R  R  R  G  V  Q  L  H  Q  L  C  G  E  H  R  *  R  I  *  K  Y  R  C  K  K  Q  E  M  K  L  T  G  C  R  R  R  R  R  R  R  *  V  R  *  W  E  E  E  C  D  R  I  Y  R  *  R  V  K  R  *  W  R  L  R  *  R  R  *  L  R  E  N  I  R  L  G  I  R  R  R  K  R  K  V  F  R  C  L  L  *  C  R  W  I  V  *  K  R  I  I  L  *  I  E  K  R  R  *  M  R  V  Y  R  R  *  K  A  P  V  W  K  G  L  *  W  M  C  G  G  D  W  W  R  E  M   : R  H  G  A  V  F  N  F  T  C  V  E  M  R  D  H  E  Q  P  Q  D  A  Q  C  A  P  E  K  L  V  R  Q  V  A  L  A  T  Q  E  A  Q  V  P  L  A  G  E  N  A  L  P  R  Y  D  D  Y  A  H  E  Q  I  L  Q  A  S  S  L  S  I  N  D  Q  S  G  D  R  E  M  S  A  F  T  Y  L  R  M  N  P  D  L  F  H  P  D  N  W  R  R  F  V  A  F  V  K  K  M  K  E  G  K  D  A  N  K  C  R  E  Q  V  E  R  E  A  E  H  F  V  H  I  T  Q  P  L  V  Q  E  A  A  V  A  L  M  H  *  A  N  R  C  Q  I  V  L  F  *  F  D  P  F  S  *  H  E  V  F  Q  H  V  T  W  I  L  *  L  V  I  V  V  L  K  C  L  *  N  C  S  S  C  S  F  F  K  V  *  T  L  C  L  N  E  M  I  H  N  S  V  V  N  T  P </first_frame>
            <second_frame>  T  I  S  T  P  P  S  P  F  F  S  I  N  L  V  N  K  T  K  K  K  I  K  K  N  S  S  F  L  I  C  K  K  K  N  *  L  *  Y  Y  Y  Y  Y  G  N  E  S  A  T  P  D  R  C  L  I  R  N  I  A  H  G  G  N  R  W  S  F  M  R  S  S  G  E  G  E  F  S  Y  I  S  Y  V  E  N  T  D  D  E  F  K  S  I  G  A  K  N  R  K  *  N  *  Q  G  V  A  V  A  V  A  A  D  E  S  D  D  G  R  R  N  A  T  G  F  I  G  S  V  S  S  V  D  G  G  S  G  R  G  G  S  *  E  R  I  *  G  *  E  F  V  G  E  R  E  R  C  S  G  V  C  Y  D  A  V  G  *  C  E  N  G  S  Y  C  E  *  K  K  G  D  E  C  E  F  T  G  V  E  K  R  R  C  G  R  D  Y  D  G  C  V  V  G  I  G  G  E  R  C  :  A  T  V  Q  F  S  T  S  H  V  L  K  C  V  T  T  S  S  H  K  M  H  N  V  H  L  R  S  W  L  G  R  W  R  *  Q  L  R  K  L  K  F  H  L  L  G  R  M  H  C  H  D  T  M  I  M  L  M  N  R  S  F  K  R  P  R  *  A  S  T  I  N  Q  V  I  E  R  *  A  R  L  H  T  *  G  *  I  L  T  Y  S  I  L  I  T  G  D  D  S  L  P  L  *  R  K  *  K  K  E  K  T  L  T  N  A  A  N  R  *  R  G  K  Q  S  I  S  F  I  *  L  S  R  *  Y  K  K  L  Q  *  P  *  C  T  K  Q  I  V  V  K  *  Y  C  F  N  L  I  L  L  A  N  M  K  F  F  N  M  L  P  G  S  Y  S  S  L  S  L  F  L  N  V  C  K  T  V  H  R  V  V  F  L  K  S  R  H  Y  V  L  M  K  *  Y  I  I  Q  *  *  I  H   </second_frame>
            <third_frame>   Q  F  Q  L  L  L  L  H  F  S  P  S  I  W  *  T  K  Q  K  K  K  L  K  K  I  H  H  F  *  S  A  K  K  K  I  S  Y  N  I  I  I  I  M  A  M  S  L  P  H  Q  I  G  A  L  S  G  T  S  L  T  A  E  T  G  G  V  S  C  E  V  P  A  K  G  S  S  A  T  S  A  M  W  R  T  P  M  T  N  L  K  V  S  V  Q  K  T  G  N  E  I  D  R  V  S  P  S  P  S  P  P  M  S  P  M  M  G  G  G  M  R  P  D  L  S  V  A  C  Q  A  L  M  E  A  Q  V  E  E  V  V  E  R  E  Y  K  V  R  N  S  S  E  K  E  K  G  V  P  V  F  V  M  M  P  L  D  S  V  K  T  D  H  T  V  N  R  K  K  A  M  N  A  S  L  Q  A  L  K  S  A  G  V  E  G  I  M  M  D  V  W  W  G  L  V  E  R  D  A :   P  R  C  S  F  Q  L  H  M  C  *  N  A  *  P  R  A  A  T  R  C  T  M  C  T  *  E  V  G  *  A  G  G  V  S  N  S  G  S  S  S  S  T  C  W  G  E  C  I  A  T  I  R  *  L  C  S  *  T  D  P  S  S  V  L  V  E  H  Q  R  S  I  R  *  *  R  D  E  R  V  Y  I  L  E  D  E  S  *  L  I  P  S  *  *  L  E  T  I  R  C  L  C  E  E  N  E  R  R  K  R  R  *  Q  M  P  R  T  G  R  E  G  S  R  A  F  R  S  Y  N  S  A  V  S  T  R  S  C  S  S  P  N  A  L  S  K  S  L  S  N  S  T  V  L  I  *  S  F  *  L  T  *  S  F  S  T  C  Y  L  D  L  I  A  R  Y  R  C  S  *  M  F  V  K  L  F  I  V  *  F  F  *  S  L  D  I  M  S  *  *  N  D  T  *  F  S  S  K  Y  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0037E15.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77053" stop="76524"/>
                    <exon start="74911" stop="74878"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>561</number_coding_nucleotides>
                  <number_encoded_amino_acids>187</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SAKKKISYNIIIIMAMSLPHQIGALSGTSLTAETGGVSCEVPAKGSSATSAMWRTPMTNLKVSVQKTGNEIDRVSPSPSPPMSPMMGGGMRPDLSVACQALMEAQVEEVVEREYKVRNSSEKEKGVPVFVMMPLDSVKTDHTVNRKKAMNASLQALKSAGVEGIMMDVWWGLVERDAPRCSFQLHMC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="78723" PGL_stop="79044"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78723" e_stop="79044"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="78723" e_stop="79044" e_length="322"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78723" stop="79044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78723" stop="79013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATCTTTTTCTCGCTTTATACAAAAACAGAAACACAATATATACATTTCTGTTGTATAAAGCTGGAGATAACTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCGTTGGTCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATGTACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAATTATACACTTCTGTGTATAAAGCGAGAGAG</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  I  A  R  R  Y  I  F  F  S  L  Y  T  K  T  E  T  Q  Y  I  H  F  C  C  I  K  L  E  I  T  V  F  H  C  N  C  I  I  R  N  C  I  I  R  W  S  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  I  F  A  C  V  C  T  I  F  S  R  F  I  Q  N  R  N  R  I  I  H  F  C  V  *  S  E  R  </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  Q  E  D  I  S  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  I  S  V  V  *  S  W  R  *  L  Y  F  T  A  I  V  *  F  A  I  V  *  F  V  G  L  F  L  C  N  I  *  S  K  M  F  V  N  C  I  I  K  C  I  T  R  R  Y  T  F  L  H  V  Y  V  Q  F  S  L  A  L  Y  K  T  E  T  E  L  Y  T  S  V  Y  K  A  R  E </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  L  F  L  A  L  Y  K  N  R  N  T  I  Y  T  F  L  L  Y  K  A  G  D  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  S  L  V  F  F  S  A  I  F  E  V  K  C  L  *  I  V  *  L  S  V  *  H  E  D  I  H  F  C  M  C  M  Y  N  F  L  S  L  Y  T  K  Q  K  Q  N  Y  T  L  L  C  I  K  R  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0037E15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 141 chains have been computed
$ 
$ memory statistics:
$ 173552 bytes spliced alignments in total
$ 80 spliced alignments have been stored
$ 2169 bytes was the average size of a spliced alignment
$ 20816 bytes predicted gene locations in total
$ 12 predicted gene locations have been stored
$ 1734 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 159 backtrace matrices have been allocated
$ 
$ date finished: 2009-02-02 17:31:43
-->
