<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-02-02 17:31:45"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327921" ref_strand="+" ref_description="SGN-U327921        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family, contains Pfam PF04432: Coenzyme F420 hydrogenase/dehydrogenase, beta domain; similar to Coenzyme F420 hydrogenase beta subunit (SP:Q00391) {Methanobacterium thermoautotrophicum} | chr1:1282744-1286583 REVERSE | Aliases: T1G11.13, T1G11_13(evalue: 7e-45, score=176) genbank/nr: gi|30678943|ref|NP_171956.2| expressed protein [Arabidopsis thaliana] gi|25083091|gb|AAN72040.1| unknown protein [Arabidopsis thaliana] gi|26451024|dbj|BAC42618.1| unknown protein [Arabidopsis thaliana] gi|30387563|gb|AAP31947.1| At1g04620 [Arabidopsis thaliana](evalue: 4e-43, score=176)">
      <seq>ttttttcagggtaagcggcgtccatttgtcgtggaaaccgtgaaggcagatgatgaagcaaaatttggaagaggtccttctcaacctgctccaaagtttgttggaaatttaatagcatttcttctcaacatagtcggaccgaagggtctagaatttgcacgttactcgctagattatcacacaatcagaaattacttaaacgtagtccgcaaatggggaaaagaaagagcggacagacatatgcctgaatatgcaaagaaaattgttagcatgtacaacgagagtggagaaattgatcaaatgctttccaaaaagtgaataatttgatggtagaactttggcatttgcaactcaagctttggtgaacaaagttatccggtacctatgctggtggaaggtagcaagtatcccatagagtagtcgaggtgcgtgcgagctaacccgtacaccatggttatcaaaaaaatgttggtgattgcaactcttcatgtacgtgtatagtgtctaattaaacacacatcagaattaactctttttgatagaattgtaattccttttataataattaactatgttgaccattggtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="+" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="5148" stop="6959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5448" g_stop="5514" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5515" i_stop="5970" i_length="456">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.535" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5971" g_stop="6035" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="132" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6036" i_stop="6118" i_length="83">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6119" g_stop="6213" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="227" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6214" i_stop="6292" i_length="79">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6293" g_stop="6661" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="596" r_length="369" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="+" ref_id="SGN-U327921" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U327921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5448" e_stop="5514"/>
          <exon e_start="5971" e_stop="6035"/>
          <exon e_start="6119" e_stop="6213"/>
          <exon e_start="6293" e_stop="6661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCAGGGTAAGCGGCGTCCATTTGTCGTGGAAACCGTGAAGGCAGATGATGAAGCAAAATTTGGTATGTGGTATTTTGTGATATTTATTCATTTCATAAGTTGTTACTAAGCTGGCTCTCTCTGTACACATACTGCTGCTGGTTCAGAATTAGATATCTGCTCTCGGGTTTTGTACTGTTCTTTGTTGGGTCCATGTGCAAGTATCAAACATCTGACCTTTTTCCCTATCCCTTTTCGCTTTGAATGCTGTTAAAAAGTATGAAATGTTACACATCTCATCGACTGTTTATTTAAGATTAACCTTAATTTGTTTTAATCCTTGTAAGTCAAGTGAATTTAGCTATTTAAGTTGCTTCAATTACTTCATTTGTTATGATACTCCCCGTTGATTACAGTATGCTGAAGGCAGAACCCCGAGAAGTAAATCCTTTTCTGACATGTTCTTGAAGTAAATATTTTTGTTGAACAACTTCTCAGTAATCTCACAAGACTTATGCAGAAACTTTCTGAATTTCCAGGAAGAGGTCCTTCTCAACCTGCTCCAAAGTTTGTTGGAAATTTAATAGCATTTCTTCTCAACATAGTAAGAACTTTTTGTTCACTGACTTGTTACTTTCAGAAAGGACAACAAATTCCCTGTGCTTAAACTTGTTTGTCTTGGTTCAGGTCGGACCGAAGGGTCTAGAATTTGCACGTTACTCGCTAGATTATCACACAATCAGAAATTACTTAAACGTAGTCCGCAAATGGGGAAAAGAAAGGTCTGTAGAAATTCATATTTGTTCCATTATGATGGATTACATTAATTTTTTCTCACACGTGTTTTTTGTGTAATTGCAGAGCGGACAGACATATGCCTGAATATGCAAAGAAAATTGTTAGCATGTACAACGAGAGTGGAGAAATTGATCAAATGCTTTCCAAAAAGTGAATAATTTGATGGTAGAACTTTGGCATTTGCAACTCAAGCTTTGGTGAACAAAGTTATCCGGTACCTATGCTGGTGGAAGGTAGCAAGTATCCCATAGAGTAGTCGAGGTGCGTGCGAGCTAACCCGTACACCATGGTTATCAAAAAAATGTTGGTGATTGCAACTCTTCATGTACGTGTATAGTGTCTAATTAAACACACATCAGAATTAACTCTTTTTGATAGAATTGTAATTCCTTTTATAATAATTAACTATGTTGACCATTGGTAAAAACAACT</genome_strand>
        <mrna_strand>TTTTTTCAGGGTAAGCGGCGTCCATTTGTCGTGGAAACCGTGAAGGCAGATGATGAAGCAAAATTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGGTCCTTCTCAACCTGCTCCAAAGTTTGTTGGAAATTTAATAGCATTTCTTCTCAACATA...................................................................................GTCGGACCGAAGGGTCTAGAATTTGCACGTTACTCGCTAGATTATCACACAATCAGAAATTACTTAAACGTAGTCCGCAAATGGGGAAAAGAAAG...............................................................................AGCGGACAGACATATGCCTGAATATGCAAAGAAAATTGTTAGCATGTACAACGAGAGTGGAGAAATTGATCAAATGCTTTCCAAAAAGTGAATAATTTGATGGTAGAACTTTGGCATTTGCAACTCAAGCTTTGGTGAACAAAGTTATCCGGTACCTATGCTGGTGGAAGGTAGCAAGTATCCCATAGAGTAGTCGAGGTGCGTGCGAGCTAACCCGTACACCATGGTTATCAAAAAAATGTTGGTGATTGCAACTCTTCATGTACGTGTATAGTGTCTAATTAAACACACATCAGAATTAACTCTTTTTGATAGAATTGTAATTCCTTTTATAATAATTAACTATGTTGACCATTGGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327685" ref_strand="+" ref_description="SGN-U327685        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | flavin-containing monooxygenase / FMO (YUCCA3), identical to gi:16555356 | chr1:1279387-1281615 FORWARD | Aliases: T1G11.14, T1G11_14(evalue: 7e-94, score=340) genbank/nr: conserved(evalue: 1e-95, score=352)">
      <seq>catgcttgtgactataaaacaggggaagtttatgaagggaagaatgtgttagttgttggatgtggtaattcaggcatggaagtttcacttgatctttgtcaccataatgcaagtccattcatggtcgttcgaagctcggttcatgttttaccaagggaaatactcggaaaatcaacgtttgagttaggagtatcaatgatgaaatggctatcaattgatgtagttgacaagatattactagttgcagcaaggttacttcttggaaacatagaaaagtatggtttaaaaaggccatccattggacctttacaactcaagaatacagaaggaaaaactccagttctagacataggtgcattacaaaagattaaaacaggagacataaagatagttccagcaatcaaaaaattttctcaaggaaaagtagaatttgtcaatggagaaatacaagaaattgattgtatcattttggcaacaggatattgcagcaatgttccttcttggttaaaggaaagtgaattcttttcaagggagggatttccaagaagtccatttccaaatggatggaaaggaaaagctggtttatatgcagttggatttacaaagagaggactttctggtgcatctttggatgcaattaaagtatcacaagatattggaaaaatttggaaagaagaaattaaacagaaaaatcaatctgttgctgttgcatgtcatagaagaaacaagttatcttccttctagtaaacgacaacaacatactcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="12696" stop="10573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12396" g_stop="12259" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12258" i_stop="11859" i_length="400">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11858" g_stop="11487" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="510" r_length="372" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11486" i_stop="11138" i_length="349">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11137" g_stop="10873" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="766" r_length="256" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-U327685" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12396" e_stop="12259"/>
          <exon e_start="11858" e_stop="11487"/>
          <exon e_start="11137" e_stop="10873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGCTTGTGACTATAAAACAGGGGAAGTTTATGAAGGGAAGAATGTGTTAGTTGTTGGATGTGGTAATTCAGGCATGGAAGTTTCACTTGATCTTTGTCACCATAATGCAAGTCCATTCATGGTCGTTCGAAGCTCGGTAAGTCTCATTCATCTAATCCAAAATCTTTCATGACTTACATCTGCTAAAGAAGAAAAAAAAAAACACTCAATTTCCTTCATAAATCTGCACACGACATATCGAATTCCTCATGACACATACATAAGAGGTCACTCCTTTAATAATCTACATGATTTACGTTTTCTAAGAGAAAAAAACACTCAATTAACTTGAGCGCGTTTTGTCTATGTCCTTCATTTGCCAGAAAATCTGCACTTGACATCTCTAATTCCTCATCACAAGTCTATATATATAATCATCATATGATATGTAATGAAATAATCAATCTAGAAAATCTGCACCTGACATCGCTAATTCCTCATCACAAATATATAATCATATGATATCTAATGAAATAATCAATCTTTTCATGAAACAGGTTCATGTTTTACCAAGGGAAATACTCGGAAAATCAACGTTTGAGTTAGGAGTATCAATGATGAAATGGCTATCAATTGATGTAGTTGACAAGATATTACTAGTTGCAGCAAGGTTACTTCTTGGAAACATAGAAAAGTATGGTTTAAAAAGGCCATCCATTGGACCTTTACAACTCAAGAATACAGAAGGAAAAACTCCAGTTCTAGACATAGGTGCATTACAAAAGATTAAAACAGGAGACATAAAGATAGTTCCAGCAATCAAAAAATTTTCTCAAGGAAAAGTAGAATTTGTCAATGGAGAAATACAAGAAATTGATTGTATCATTTTGGCAACAGGATATTGCAGCAATGTTCCTTCTTGGTTAAAGGTAAGAAAAAAAATATTTTTTTATTTTTATTTTGGTTGTGTATTTATTTTTTAATTTATGGATTGTTGTGACAGTTATGGAAGTTGGTTTTTTTCTTTTGTAGATTCTCTGTTCCTATTTCTTGTAGCATTGTTATGTATGATCAGGTGGATGATACACGTATTCTTTTATACTATGGTAATTAATATTTTCAGAAACAAGATTGAGCTTTCCAAGAAAATAGTTGAATGGATTAGATCAGAGATCTGAGCAGCAAATAAAATTCTGTTTTTTGTCCTTTTTTCTATGTTCAAGAATTATTTTCATTGAATTTTGGTATAATGAGTTTGTATTCATTTTTAAAATGCAGGAAAGTGAATTCTTTTCAAGGGGAGGGATTTCCAAGAAGTCCATTTCCAAATGGATGGAAAGGAAAAGCTGGTTTATATGCAGTTGGATTTACAAAGAGAGGACTTTTCTGGTGCATCTTTGGATGCAATTAAAGTATCACAAGATATTGGAAAAAATTTGGAAAGAAAGAAAATTAAAACAAGAAAAAATACAATCTGTTGCTGTTGCATGTCATAGAAGAAACAAGTTATCTTCCTTCTAGTAAACGACAACAACATACTCAG</genome_strand>
        <mrna_strand>CATGCTTGTGACTATAAAACAGGGGAAGTTTATGAAGGGAAGAATGTGTTAGTTGTTGGATGTGGTAATTCAGGCATGGAAGTTTCACTTGATCTTTGTCACCATAATGCAAGTCCATTCATGGTCGTTCGAAGCTCG................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATGTTTTACCAAGGGAAATACTCGGAAAATCAACGTTTGAGTTAGGAGTATCAATGATGAAATGGCTATCAATTGATGTAGTTGACAAGATATTACTAGTTGCAGCAAGGTTACTTCTTGGAAACATAGAAAAGTATGGTTTAAAAAGGCCATCCATTGGACCTTTACAACTCAAGAATACAGAAGGAAAAACTCCAGTTCTAGACATAGGTGCATTACAAAAGATTAAAACAGGAGACATAAAGATAGTTCCAGCAATCAAAAAATTTTCTCAAGGAAAAGTAGAATTTGTCAATGGAGAAATACAAGAAATTGATTGTATCATTTTGGCAACAGGATATTGCAGCAATGTTCCTTCTTGGTTAAAG.............................................................................................................................................................................................................................................................................................................................................................GAAAGTGAATTCTTTTCAA-GGGAGGGATTTCCAAGAAGTCCATTTCCAAATGGATGGAAAGGAAAAGCTGGTTTATATGCAGTTGGATTTACAAAGAGAGGAC-TTTCTGGTGCATCTTTGGATGCAATTAAAGTATCACAAGATATTGG-AAAAATTTGGAAAG-AAG-AAATT-AAAC-AG-AAAAAT-CAATCTGTTGCTGTTGCATGTCATAGAAGAAACAAGTTATCTTCCTTCTAGTAAACGACAACAACATACTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344226" ref_strand="+" ref_description="SGN-U344226        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 2e-07, score=59.3)">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="+" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="26018" stop="27059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26318" g_stop="26757" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="+" ref_id="SGN-U344226" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U344226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26318" e_stop="26757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGTAGATGACCAAATTTTTTTCCGAATACGAAATTAAATTACAATACACAC-AAAACAATAGTTTAATTTTTTTTCTTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGGATAAGAAACTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAAAATATACCTTGAACTTTTATAGAAGAATCATATGTACCACTAAATAATTTTTTT---TAAAAATTATAAGTAATAAATATAAATTTAAAACTAATTATTTAACTTTCGTCAAATGAAGGGTATATGTGAGCCATTTTGTAACGGTAGGTGTATATGTGAGCCATTTGTATAACGGTAAGGGCATATATGAGCCACTTTCATAACGAGGGATGTATCAGCTCCAAATGACAAAGTTGAGGGGTATATCAGACCCTTTTCCCT</genome_strand>
        <mrna_strand>TTATTGTAGATGACCAATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATATTTGAATTTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATG-AAAAAATT--AAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320649" ref_strand="+" ref_description="SGN-U320649        Tomato 200607 #1 [11 ESTs aligned] arabidopsis/peptide: | Symbol: None | malate dehydrogenase (NAD), chloroplast (MDH), identical to chloroplast NAD-malate dehydrogenase (Arabidopsis thaliana) GI:3256066; contains InterPro entry IPR001236: Lactate/malate dehydrogenase; contains Pfam profiles PF00056: lactate/malate dehydrogenase, NAD binding domain and PF02866: lactate/malate dehydrogenase, alpha/beta C-terminal domain | chr3:17524259-17526026 FORWARD | Aliases: F1P2.70(evalue: 9e-161, score=563) genbank/nr: gi|5123836|emb|CAB45387.1| NAD-malate dehydrogenase [Nicotiana tabacum](evalue: 0, score=660)">
      <seq>cttagttatctgcctcggaacctccgaattttataatcttataggtagaagtgaagaaaaaatcagtaaaaattctgagaatttgagtcggtgaaatggcagcagcatcagcaactactctctcagttggttccgccacatcctttggctccatagtgagcccaaaattacaatcaaaggcctttattgcgaaatgcaataccagggactaccttaggagtttcagtggccttaaggcagaggcatttgtacgatgtgaatccgagtcgtcatttctaggaaatgaaagcattgcagctcttcgacaatccattactcctaaagcccgaaaccaaaagcagagatcttcgaaccatgttcagcctcaagcatcttataaagtggctgttctcggagcctctggcggtataggccagcctctagctcttctgattaagatgtcaccgctagtatcatcgttgcacctttatgatattgcaaatgtcaaaggagtcgcagcagatctcagccattgcaacactcccgctcaggtttttgactttacgggagcttctgagttggccaattctttgaaaggtatagatgtagttgtcataccagctggcgttccgagaaagcctggtatgacacgggacgacttgttcaacataaatgctaatattgtgaaaagcttggttgaggctgttgctgacaattgcccagatgcctttatccacattatcagcaatccagtcaactccacagtgccgattgctgccgaggttctgaagcaaaagggtgtgtatgatcctaaaaaactctttggtgttaccaccctggacgttgtcagagcaaacacattcgtcgcgcagaagaaaaacctgaaactcattgacgttgacgtccccgtgattcgtgggcatgcagggataacaattctgccattgctgtcaaagacaagaccatcaactactttcacggacgaagaagtgcaggaactaaccgtgaggatccaaaacgctgggaccgaggtcgttgaagcaaaggctggagcaggatctgcaacactgtcaatggcatatgctgcagctagatttgttgaatcctcacttcgtgcccttgacggtgatgctgatgtttacgagtgttcttacgttcaatctgacctgacggaacttccattctttgcatcacgagttaaactaggaaggaatggaatcgaggcattgatttcgtctgatctccgtggattaactgagtatgaacagaaggcattagaagctctaaagatagagttgaaagctagcattgagaaagggatagcttatgctcaaaaacaaacagtgagtgcttagagaaagagtttagtttagattaactataggaaaagattctcaacatgacaatttttgcatggtttgaacttactaagccctttattctttttattggtctgaactctactagtgntttgttattgcttccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="55782" stop="52094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55482" g_stop="55396" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55395" i_stop="53774" i_length="1622">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53773" g_stop="52394" g_length="1380"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="1467" r_length="1380" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-U320649" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55482" e_stop="55396"/>
          <exon e_start="53773" e_stop="52394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAGTTATCTGCCTCGGAACCTCCGAATTTTATAATCTTATAGGTAGAAGTGAAGAAAAAATCAGTAAAAATTCTGAGAATTTGAGGTAATTTTTTATTGTGATTATATATGATTTCCTGAACTTTTTTTTATTGATTTTTTGTTTATTTTCTTGTGCCATTTTGGTGTAATTTGTCAATTTTATGTAGAGTTTTGCTATATTTGATGTTCTTTGTCTGTGTTAGGCTAAAGGGGGTTCTTGAAAAATGAAAAGAAGAATAAAGTTTGAATCTTTTCATTTGATTATTCAATTGAAGGCTGTATTTACCACAAAGAAAGTTAATTTATTTAAGGGGTTAGCTTGATTTGTGATTTCTTCCAATGTGTTCAAGCTTTGGTGGATAGGGTTACTTGGTACCTATATTGGTGGGAGGTAGTAAGTAGCGGGGGAATTAATCGAGGTGCGTGCGAGCTGGTTCAGACACCACAAAGAAAGTTAATTTATTTAAGGCAATGTGTCTAAGCTTTGTTTGGTGGATACTGAATAGGGTTACCTGGTACCAATGATGGTGGGAGGTAGAAGGCACCTGTGGAACTAATCGAGGTGTGTGCAAGCTGGTCCAGACACCACAAAGAAAGTTAATTTATTTAAGGCAATGTGTCCAAGCTTTGTTTGGTGGATAGGGTTACCTTGTAAGGATGCTGGTAGTAGGGTACCCGAGGAATTAGTCGGTTGCATGCAAGTTGGCGTAGACATCACGATATTTAAAAAAGAAAGAGGATATCCCATTCCTAGCAGCCTTAACAGTTGACTGTGGCAGAATTCTCTCTCTGCTGTTGGTCCTTTTAGGATTTCTGCAGAACTGTTCAATTACACTTCGAGGTATCTCACGCGAAATGTTAGGACGTATGTGTCTAGTTGTTTCAACTTTATACAATCAGGTGCATACCCAAAGTTGGAAGGCATAGATGTTAGCTGATGCCAAGTTAAAGGGAAACGTTTATTTATTATGTCTAATATGAATGATACAGTGAATACTTACACTTTTCCTGTCATCAATCTTTCAAAATCGCTGATGCTGTATTTTTCCTGTCTTTTCTGCTGAGCTGAATAGTTGGCTTATATGTTTTACTGGTGTTCCGTGCATATGAGATGATTTAGTACAGTTGTTTGCGAATGTAAACATTTCAAAACGTGTCTTCTATAGCTTGATTTGGATAATAAATGTATGAACTTGGATGCATTGTTTGTTAAACAACTTATTTGACTATTTTTCTTTGTTAGGCTCAAACTCCTTTTCGATGATTTTACACTAGTCGGAAATTTCTTTCTTTTTCCCTGGTTTAGGGGGTCGTGAAGCAATGAACTCCCTTTTCTTTTAATTTTTTCGACAAATCTTATTAACAACCGAAAAATAGACTTTGCTGGTTTCTAAGAGTGAAGTTTTAAAGTGTCCATTTGGGGACATCCGATGAAATTGGAACAATAAGAGTAAATGCTTAAGTAGATCATTATATACTGTGTTTGGTAGAGAGTGTTCACAACATGTTTTAGAATGTAGAATAAGTGCGACACTAAGTAACCCGTTGTTCATCTATTCGTTGTGGTTTGCAATAAATATTCATCGATTATCAGTGTAAAAAACTCCTGAATTTCCTCCCATGTATGTTCTAAAATCGTGTCTTACAATGCATAGAAGAAATTAATGTCAGCGATCCTTTTTGCAGTCGGTGAAATGGCAGCAGCATCAGCAACTACTCTCTCAGTTGGTTCCGCCACATCCTTTGGCTCCATAGTGAGCCCAAAATTACAATCAAAGGCCTTTATTGCGAAATGCAATACCAGGGACTACCTTAGGAGTTTCAGTGGCCTTAAGGCAGAGGCATTTGTACGATGTGAATCCGAGTCGTCATTTCTAGGAAATGAAAGCATTGCAGCTCTTCGACAATCCATTACTCCTAAAGCCCGAAACCAAAAGCAGAGATCTTCGAACCATGTTCAGCCTCAAGCATCTTATAAAGTGGCTGTTCTCGGAGCCTCTGGCGGTATAGGCCAGCCTCTAGCTCTTCTGATTAAGATGTCACCGCTAGTATCATCGTTGCACCTTTATGATATTGCAAATGTCAAAGGAGTCGCAGCAGATCTCAGCCATTGCAACACTCCCGCTCAGGTTTTTGACTTTACGGGAGCTTCTGAGTTGGCCAATTCTTTGAAAGGTATAGATGTAGTTGTCATACCAGCTGGCGTTCCGAGAAAGCCTGGTATGACACGGGACGACTTGTTCAACATAAATGCTAATATTGTGAAAAGCTTGGTTGAGGCTGTTGCTGACAATTGCCCAGATGCCTTTATCCACATTATCAGCAATCCAGTCAACTCCACAGTGCCGATTGCTGCCGAGGTTCTGAAGCAAAAGGGTGTGTATGATCCTAAAAAACTCTTTGGTGTTACCACCCTGGACGTTGTCAGAGCAAACACATTCGTCGCGCAGAAGAAAAACCTGAAACTCATTGACGTTGACGTCCCCGTGATTGGTGGGCATGCAGGGATAACAATTCTGCCATTGCTGTCAAAGACAAGACCATCAACTACTTTCACGGACGAAGAAGTGCAGGAACTAACCGTGAGGATCCAAAACGCTGGGACCGAGGTCGTTGAAGCAAAGGCTGGAGCAGGATCTGCAACACTGTCAATGGCATATGCTGCAGCTAGATTTGTTGAATCCTCACTTCGTGCCCTTGACGGTGATGCTGATGTTTACGAGTGTTCTTACGTTCAATCTGACCTGACGGAACTTCCATTCTTTGCATCACGAGTTAAACTAGGAAGGAATGGAATCGAGGCATTGATTTCGTCTGATCTCCGTGGATTAACTGAGTATGAACAGAAGGCATTAGAAGCTCTAAAGATAGAGTTGAAAGCTAGCATTGAGAAAGGGATAGCTTATGCTCAAAAACAAACAGTGAGTGCTTAGAGAAAGAGTTTAGTTTAGATTAACTATAGGAAAAGATTCTCAACATGACAATTTTTGCATGGTTTGAACTTACTAAGCCCTTTATTCTTTTTATTGGTCTGAACTCTACTAGTGTTTTGTTATTGCTTCCTTT</genome_strand>
        <mrna_strand>CTTAGTTATCTGCCTCGGAACCTCCGAATTTTATAATCTTATAGGTAGAAGTGAAGAAAAAATCAGTAAAAATTCTGAGAATTTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGTGAAATGGCAGCAGCATCAGCAACTACTCTCTCAGTTGGTTCCGCCACATCCTTTGGCTCCATAGTGAGCCCAAAATTACAATCAAAGGCCTTTATTGCGAAATGCAATACCAGGGACTACCTTAGGAGTTTCAGTGGCCTTAAGGCAGAGGCATTTGTACGATGTGAATCCGAGTCGTCATTTCTAGGAAATGAAAGCATTGCAGCTCTTCGACAATCCATTACTCCTAAAGCCCGAAACCAAAAGCAGAGATCTTCGAACCATGTTCAGCCTCAAGCATCTTATAAAGTGGCTGTTCTCGGAGCCTCTGGCGGTATAGGCCAGCCTCTAGCTCTTCTGATTAAGATGTCACCGCTAGTATCATCGTTGCACCTTTATGATATTGCAAATGTCAAAGGAGTCGCAGCAGATCTCAGCCATTGCAACACTCCCGCTCAGGTTTTTGACTTTACGGGAGCTTCTGAGTTGGCCAATTCTTTGAAAGGTATAGATGTAGTTGTCATACCAGCTGGCGTTCCGAGAAAGCCTGGTATGACACGGGACGACTTGTTCAACATAAATGCTAATATTGTGAAAAGCTTGGTTGAGGCTGTTGCTGACAATTGCCCAGATGCCTTTATCCACATTATCAGCAATCCAGTCAACTCCACAGTGCCGATTGCTGCCGAGGTTCTGAAGCAAAAGGGTGTGTATGATCCTAAAAAACTCTTTGGTGTTACCACCCTGGACGTTGTCAGAGCAAACACATTCGTCGCGCAGAAGAAAAACCTGAAACTCATTGACGTTGACGTCCCCGTGATTCGTGGGCATGCAGGGATAACAATTCTGCCATTGCTGTCAAAGACAAGACCATCAACTACTTTCACGGACGAAGAAGTGCAGGAACTAACCGTGAGGATCCAAAACGCTGGGACCGAGGTCGTTGAAGCAAAGGCTGGAGCAGGATCTGCAACACTGTCAATGGCATATGCTGCAGCTAGATTTGTTGAATCCTCACTTCGTGCCCTTGACGGTGATGCTGATGTTTACGAGTGTTCTTACGTTCAATCTGACCTGACGGAACTTCCATTCTTTGCATCACGAGTTAAACTAGGAAGGAATGGAATCGAGGCATTGATTTCGTCTGATCTCCGTGGATTAACTGAGTATGAACAGAAGGCATTAGAAGCTCTAAAGATAGAGTTGAAAGCTAGCATTGAGAAAGGGATAGCTTATGCTCAAAAACAAACAGTGAGTGCTTAGAGAAAGAGTTTAGTTTAGATTAACTATAGGAAAAGATTCTCAACATGACAATTTTTGCATGGTTTGAACTTACTAAGCCCTTTATTCTTTTTATTGGTCTGAACTCTACTAGTGNTTTGTTATTGCTTCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346679" ref_strand="+" ref_description="SGN-U346679        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | lipase class 3 family protein, very low similarity to diacylglycerol lipase (Aspergillus oryzae) GI:1772352; contains Pfam profiles PF01764: Lipase (class 3), PF00168: C2 domain | chr4:7871247-7876873 REVERSE | Aliases: T6G15.100, T6G15_100(evalue: 7e-43, score=171) genbank/nr: gi|30682521|ref|NP_193091.2| lipase (class 3) family [Arabidopsis thaliana](evalue: 5e-41, score=171)">
      <seq>tttgatgttctctctcggtctctcctatggaggtggcttgtcataaatgaagtgtgaaactcttgaacatgctattgaatatgcattggtgcgttgtctaacatgtcagaccaacttttagcaagtttgagccataatcagatgccttatcacattgtttgccgatagttcatgggaatttcttgcctgttcttctattgtgacgtggtgaacggctgtaactaaatcactttcgcctgctttggaatcatactgagagcttaattttgttaaattctgagtgactctatataattaagttgcttcttatattgtagaaagttaaggacagctggagggttgtaaatcacagagatataataccaacagttcctcgcttgatgggctactgccatgttgctcaacctgtttatttggcagctggagatccgcaaaacacaatggataatgtggaactcttggaagatggttaccaaggtgatgttatcggagaggccacacctgatgttattgtcagtgaatttatgaaaggtgaaaaagaacttattgagaaaatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="61956" stop="59932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61656" g_stop="61214" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61213" i_stop="60799" i_length="415">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60798" g_stop="60718" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="524" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60717" i_stop="60267" i_length="451">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60266" g_stop="60232" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="559" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-U346679" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U346679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61656" e_stop="61214"/>
          <exon e_start="60798" e_stop="60718"/>
          <exon e_start="60266" e_stop="60232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATGTTCTCTCTCGGTCTCTCCTATGGAGGTGGCTTGTCATAAATGAAGTGTGAAACTCTTGAACATGCTATTGAATATGCATTGGTGCGTTGTCTAACATGTCAGACCAACTTTTAGCAAGTTTGAGCCATAATCAGATGCCTTATCACATTGTTTGCCGATAGTTCATGGGAATTTCTTGCCTGTTCTTCTATTGTGACGTGGTGAACGGCTGTAACTAAATCACTTTCGCCTGCTTTGGAATCATACTGAGAGCTTAATTTTGTTAAATTCTGAGTGACTCTATATAATTAAGTTGCTTCTTATATTGTAGAAAGTTAAGGACAGCTGGAGGGTTGTAAATCACAGAGATATAATACCAACAGTTCCTCGCTTGATGGGCTACTGCCATGTTGCTCAACCTGTTTATTTGGCAGCTGGAGATCCGCAAAACACAATGGTGAGTAGATTTCATTTTCTCACTTTTTACACTATAAAACGTTGGATTGGCAGAATGTTGGCACTGTTAAGGAAGTTGTGTTTTCCCGTTAGAGATTAAAGTGGAAAAATGTGTCGGATGGTTAGCTTAACCTGAAGGAAATCACAGAAGGTTCAAAACAATTGACCTTTGTTATTTCTTCTATAAAACTATTAACTCAATTGCTCGAAGTAACTTTTTGATATTTTCTTCATAGTGTAGGTAGAAAGTATCAAGAAGTACTATGTCATTCTTACTTATTATGTATGGGAACCTACTATCGTTACCTCCCTGGAAAAAGTCGGAAAGAAAATATGATCATTTTTTACATCATTCCTTTTATACGTGAAAGGAGCTTGTTGTTTAACTATATATGTCTCGGCACATCACATTTCAGGATAATGTGGAACTCTTGGAAGATGGTTACCAAGGTGATGTTATCGGAGAGGCCACACCTGATGTTATTGTCAGTGAATTTGTATGTTTCTCCACCTTTGTTCTCCTGTATCTTTAGTTCCTTCGTTTTGGTTCTGTGCTCCATTTCATCCATTCGTGATTTGTTCTATTAAGATCTTCAACTGTTAAAATTGTACTGCTACTTACCGTACATTTGACCAATTGAGACTTCTGTTTATTCATTTTGTTCAATACTTCGCCTAATGGAGAGTCTCCTTGAGGCATAAGCTTATCAATTCACTCCATTAGGTTGAAGCCATGTTGCTCGGAGTTTTGTGTTGGATCCTTCAAAAGCTATGCATTGTTAGGGGATCCGAGACAGGTTTGGCAACATTTTTGGGAGGTCCGAGCAAGAATTGCGGGAGGGGAGCTTGTTCTGAGTTATTTTTGCTATATGGAACACATTTCCTTTTTATTTAAAGGTAAAGAACTCTTGATAATCTCGCGATTACTTATCGTAACGTTTTGTGCAGATGAAAGGTGAAAAAGAACTTATTGAGAAAATACT</genome_strand>
        <mrna_strand>TTTGATGTTCTCTCTCGGTCTCTCCTATGGAGGTGGCTTGTCATAAATGAAGTGTGAAACTCTTGAACATGCTATTGAATATGCATTGGTGCGTTGTCTAACATGTCAGACCAACTTTTAGCAAGTTTGAGCCATAATCAGATGCCTTATCACATTGTTTGCCGATAGTTCATGGGAATTTCTTGCCTGTTCTTCTATTGTGACGTGGTGAACGGCTGTAACTAAATCACTTTCGCCTGCTTTGGAATCATACTGAGAGCTTAATTTTGTTAAATTCTGAGTGACTCTATATAATTAAGTTGCTTCTTATATTGTAGAAAGTTAAGGACAGCTGGAGGGTTGTAAATCACAGAGATATAATACCAACAGTTCCTCGCTTGATGGGCTACTGCCATGTTGCTCAACCTGTTTATTTGGCAGCTGGAGATCCGCAAAACACAATG...............................................................................................................................................................................................................................................................................................................................................................................................................................GATAATGTGGAACTCTTGGAAGATGGTTACCAAGGTGATGTTATCGGAGAGGCCACACCTGATGTTATTGTCAGTGAATTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAAGGTGAAAAAGAACTTATTGAGAAAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321435" ref_strand="+" ref_description="SGN-U321435        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: | Symbol: None | lipase class 3 family protein, very low similarity to diacylglycerol lipase (Aspergillus oryzae) GI:1772352; contains Pfam profiles PF01764: Lipase (class 3), PF00168: C2 domain | chr4:7871247-7876873 REVERSE | Aliases: T6G15.100, T6G15_100(evalue: 2e-120, score=429) genbank/nr: putative(evalue: 2e-118, score=429)">
      <seq>aaaagcaaggtgaaatgggggacaaaagagccaatgtggaatgaggagtttgctttaaatattaagcagccacctctgtatgatcttcagattgcagcttgggatgcaaatctggtgactccacataaacgcatgggaaatgcagcagttaatttggaacatctctgtgatggagattctcataaactgctggttgatttggatggaatgggcggtggtgggaagatagagatagagattaagtacaagagttttgagaaaattgaagaagaaaagaagtggtggaacatcccaatcattacagaatttctaagaaaaaacgggtttgagtctgctttgaagacaattcttggttccgagactgttcaagctcgacaatttgtacagtttgcgtttggacagatgaagctacttaatgatgcatataatgattcaaatagcagcagcagtcctgtcctggaatcagatgtactaccggagtcgcagcaatcatccaacttggatgactcaagcatgcccccagcatcagaaatctcaaataatttgaaagacaccaaagttgatggtgaagtgaagcttaatcgtgatggaagtgacgtaaccgatgaacatgattcccctggtactaaaattttagagagctttcaatcagataaacatttctggaagaattttgctgataccgtcaatcaaaaagttgttcaaagacttggtctccctgctcctgagaaaataaagtgggataatcttgacttgttaaataagattggattgcaatcacgaaaagacgcggatgcaagttatgttgaatctggtcttgcaactcctgataaacgagaaaatgttaatggtagtgcatcaactgaatcacctattcttaataacattcagtcatcacttccagatatcaagaaggtgacacaagacttattgcgtcaaactgataccattttgggagcattgatggttctaaatgccacagtttctcaattcaacaaaggagcaggccttttcggaaagggtgatgctaaagaagattcttcaactggactggaaaatgacatccttttatatcccatgaataaagatggaatagtgttggatgagaagaaagctgaggagatgaagtctcttttctcaacagcggagactgccatggaagcttgggcactgctagctacttcattgggacatccgacattcatcaaatctgaatttgacaaattatgcttcttagataatgagtcaactgacacagaggtagcgctctggcgtgattcagcaaggaaacggttagttgttgctttcaggggaacagaacaaacaaaatggaaggatcttgtgacggacttgatgctagttcctgcagggttgaatcctgaaaggataggcggggacttcaaggaagaagttcaggttcacagtggtttcctaagtgcatatgattcagttaggattaggctcatctcgcttatcaaaaaagcaattggctaccaggatgatgatcttgacacgccaaacaaatggcatgtttacgtgactggccatagtcttggtggtgcattggctactcttctcgctcttgaactatcatcaagtcaactagctaagcgtggagctatacgtgtgaccatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="67797" stop="61682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67497" g_stop="67478" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67477" i_stop="66969" i_length="509">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66968" g_stop="66899" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="90" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66898" i_stop="66255" i_length="644">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66254" g_stop="66173" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="172" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66172" i_stop="65800" i_length="373">
            <donor d_prob="0.770" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65799" g_stop="65735" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="237" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65734" i_stop="65515" i_length="220">
            <donor d_prob="0.765" d_score="1.00"/>
            <acceptor a_prob="0.844" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65514" g_stop="64492" g_length="1023"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="1260" r_length="1023" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64491" i_stop="64379" i_length="113">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64378" g_stop="64316" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1261" r_stop="1323" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="64315" i_stop="64237" i_length="79">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="64236" g_stop="64190" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1324" r_stop="1370" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="64189" i_stop="63476" i_length="714">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.896" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="63475" g_stop="63430" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1371" r_stop="1416" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="63429" i_stop="63322" i_length="108">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.608" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="63321" g_stop="63242" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1417" r_stop="1496" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="63241" i_stop="62872" i_length="370">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="62871" g_stop="62758" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1497" r_stop="1610" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="62757" i_stop="62009" i_length="749">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="62008" g_stop="61982" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1611" r_stop="1637" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-U321435" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U321435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67497" e_stop="67478"/>
          <exon e_start="66968" e_stop="66899"/>
          <exon e_start="66254" e_stop="66173"/>
          <exon e_start="65799" e_stop="65735"/>
          <exon e_start="65514" e_stop="64492"/>
          <exon e_start="64378" e_stop="64316"/>
          <exon e_start="64236" e_stop="64190"/>
          <exon e_start="63475" e_stop="63430"/>
          <exon e_start="63321" e_stop="63242"/>
          <exon e_start="62871" e_stop="62758"/>
          <exon e_start="62008" e_stop="61982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCAAGGTGAAATGGGGGTAGGTAGTTGGTCATGTGTTAAACTGCAACCTTCTACTCTTTTCAGTCAGAACTTCTCTAGATCTTGTAGGTTTACTTAACAATGAGTCAGGTTCGTTGCATGTCGTCAACGTGTTCCTGTGCAAGTATTGCTTGCATAAGCCGAATGATAAAGTAACTAATATGAGAGTCTATTATGGTTACTAAATTCAGTCTTCTCTTCTGTTTGAGCAACGTATCAAATTTTTAGCAAAAACTTATTCTGGATTTAGTAAAATACAATTATTTTTCATCCATAACTCATATTCTATTGTTATCTTGAGTGTGATTATTCCACCAGTATCTTATTTGAAGTTCCATGCTTCTTTATCCTTTTAATTTGTCATCGAGAAGGCAAAAGGTCTACAATTGCTATTTTCTGTTGGAGAATAAAGCTATCCTTTTCTTTGTTCAAATTATGCACTATTTCAATCTTGAAACATAATCCAATAACGGAAAAAATGTTAATTTCATGAATTAATGTTTGCAGGACAAAAGAGCCAATGTGGAATGAGGAGTTTGCTTTAAATATTAAGCAGCCACCTCTGTATGATCTTCAGGTTGATAACTTGAGTTAATCCTTTCTCTCTAATAGTTTATTAATTAAAGGATAGCATTCCAGAAACTGTAACATTTTGCTTTTGAAATACGACTTCAATTTGCTGTAACTTAGCTCTTCCACATTAGGAAGTTTACGACACGGTATGTGGTACACCAAATCTCCTAATGATAAATGAGCAGTTCTGGTAAGATATGCAACTTGAAAAGCTTTAAGCTAACACTGCTAAATTAACTGTCTTCTGACTGACTGCTAATTCAATTATGAACGTGTATGTGAACTTCCCATATCCAACAATGTCTTTCTTGCTGAATGCTAGTTTTTCATTTCTACTTCCTGCTGAGATCCATAGTATTAACCAAATTGGAACAAACAGAATCAGTCTTTTAAGGTTATCGGCCTCGGACTAGAACTTACGGACTCGGAACTGCACATCTTGCTTTATGTTGTCTAAGATATCCATAAGAGTCTGCTTCTGTCTTTTTAGCTGCAGTCTTTAAAATGAGGAACAACTTATTTTTTCGTTATTTTTACCGTTATCTGCTCATTAGAGGACTTTCGGATGCAGTATGCTGGCATGACATGTTTTTAGGTGCTCTTATTTCTCGATTCCAGATCTGATGAATTATTCATTACTACTGTCAGATTGCAGCTTGGGATGCAAATCTGGTGACTCCACATAAACGCATGGGAAATGCAGCAGTTAATTTGGAACATCTCTGTGATGGTACGAGCTCAAGAAATGGTTCTCGTGATATATTGTGCTTCAAATAATTGTCTAGTTATCATGTTGGCTAAAATTTCATTCATGTAAATAAGGTTTGGCTTCCTTTCCAACTTATCCCATGAAAATGGGGGAAGAAGTTAAGAGTTCATTTTCAGTATGCATTTTGGTTGTGTTTTGATGACTACGTTGAAGGTGTCTCATTGCTCATAAAACAAATTGACAAAGGAAGAACACTTAAAGGAACCAAATTAGTTTCAATAGTTATATACTTCTGAATACTGTCATAACTGATATGAGAGCTGACATAAGGATTAGGCTGATATACAAACATTGATGTTTTAATTTGTGAAAATAACAAACATGTGTTTTCTAGGAGATTCTCATAAACTGCTGGTTGATTTGGATGGAATGGGCGGTGGTGGGAAGATAGAGATAGAGGTAAGTTGATTTGAATCTGGAGGCATATTCAAGGTTCAAGATCGCTAAGACCTTCATTTTACGAGGATTTATCAGACCATCACATTATTTTGATGTGTACACTCTATAGCTGATTAGTATGCTAATCTTAACTTCAGAATATCCTTCTTAAATGATACTCAATTTGACCATTGTTTATCCAATTCGAGATTCCACTAATTGTCCTACTAACATGATACAGATTAAGTACAAGAGTTTTGAGAAAATTGAAGAAGAAAAGAAGTGGTGGAACATCCCAATCATTACAGAATTTCTAAGAAAAAACGGGTTTGAGTCTGCTTTGAAGACAATTCTTGGTTCCGAGACTGTTCAAGCTCGACAATTTGTACAGTTTGCGTTTGGACAGATGAAGCTACTTAATGATGCATATAATGATTCAAATAGCAGCAGCAGTCCTGTCCTGGAATCAGATGTACTACCGGAGTCGCAGCAATCATCCAACTTGGATGACTCAAGCATGCCCCCAGCATCAGAAATCTCAAATAATTTGAAAGACACCAAAGTTGATGGTGAAGTGAAGCTTAATCGTGATGGAAGTGACGTAACCGATGAACATGATTCCCCTGGTACTAAAATTTTAGAGAGCTTTCAATCAGATAAACATTTCTGGAAGAATTTTGCTGATACCGTCAATCAAAAAGTTGTTCAAAGACTTGGTCTCCCTGCTCCTGAGAAAATAAAGTGGGATAATCTTGACTTGTTAAATAAGATTGGATTGCAATCACGAAAAGACGCGGATGCAAGTTATGTTGAATCTGGTCTTGCAACTCCTGATAAACGAGAAAATGTTAATGGTAGTGCATCAACTGAATCACCTATTCTTAATAACATTCAGTCATCACTTCCAGATATCAAGAAGGTGACACAAGACTTATTGCGTCAAACTGATACCATTTTGGGAGCATTGATGGTTCTAAATGCCACAGTTTCTCAATTCAACAAAGGAGCAGGCCTTTTCGGAAAGGGTGATGCTAAAGAAGATTCTTCAACTGGACTGGAAAATGACATCCTTTTATATCCCATGAATAAAGATGGAATAGTGTTGGATGAGAAGAAAGCTGAGGAGATGAAGTCTCTTTTCTCAACAGCGGAGACTGCCATGGAAGCTTGGGCACTGCTAGCTACTTCATTGGGACATCCGACATTCATCAAATCTGAATTTGACAAATTATGCTTCTTAGATAATGAGTCAACTGACACAGAGGCAAGTTCATATGTTGCTGGCTATGAGTTCTTAGTTTCTAATGTATCTTAGATCTGATTCATTTGATCCAAGGAAAGCTATTCTACTGATTTTGGATTCTGTAAGACTTGCAGGTAGCGCTCTGGCGTGATTCAGCAAGGAAACGGTTAGTTGTTGCTTTCAGGGGAACAGAACAAGTAGGTTCCGGTGTTAAACACATCTTTAAAACTTGTTGATTTAGCTTAGTTGTGGATAACCGGTTTTTCTTTTATCCAGACAAAATGGAAGGATCTTGTGACGGACTTGATGCTAGTTCCTGCAGGGTAAAATCACAAATCTGTACAAGCACAGGCTGGCTTTAGTTTTTCTTTCTTTCTCTACTTTGCCCTTCTGGTTTCTCTGTACTACTAAGATGTTTTTCCTATCACAGTAAACAGATTCTCCTTCCGTTCAATTTGTTTGTCTTACTTTCCTTTTTAATCCGTTTCGAAGAGAATGTCTCTTCCTTTTCTGAAAACTCTTTCATTCTAACTTTCCACATGACATGTTTAAGACCACAAGATTACAGTCATTTTGGTACATTCTACATATCATAATTTAAGACCACAGTATTCAAAAGTCTTCTTTACTTTCTTAAACTCTGTGCCAAGTCAAAACCAGTCAAACAAATCGAAACGGAGGGTGTAATTTTTTCTTCTCTAAGTCTCTGAAAGTGTACTTTTATTGAAATACAACTCTTTACTATGCTGAAAGAAACATTTCCTTTTTCTTAGAGGAATAGGAGTAGAAGATAACCTTCCATCCTACATTATTAAGTTTAGACTGCAAATACCATCATATCTAAAGGTTTTCCTGAAAAAAGTTTTAACTTCGAACATAATTTGAAACAACAAGAAATAGCCAAACACTTTGGTAATTTTGAATATGAATTGTACGTTCTTGCATCTTCATTATTCGGATGTTGTACAGAAACTTTAGATGGTTAAGCAACCACTGTCCATTTTATTTCGCATCCTGAGTTGTCTCCTACTCTGCAGGTTGAATCCTGAAAGGATAGGCGGGGACTTCAAGGAAGAAGTTCAGGTGGCACTGAAATTCTTACTTTTCTATCTCTTAGTGCCTGAAATATGAATGTATTCTACTTATATTTATAATTTTTCTAATTATCAGAACCAGAGATTATTTTTGTAGGTTCACAGTGGTTTCCTAAGTGCATATGATTCAGTTAGGATTAGGCTCATCTCGCTTATCAAAAAAGCAATTGGCTACCAGTAAGTGGACTGTTAAACAAAACTGTACAACATTGTTCCTCCTTTCCTATGTCTCTTTCGTACCTTCAAGTAGAAGTCGTGTCAAATATTTCTACAAGTCTATACTAAGTGGACTCGTGTCATGAGCTTAGTGTTACACTCCCAACTCTTAAAACTTGTTATGCGCTTTTGCTTTACTGAGATGTCTAGACCTGGCTTAGTCTTTTTTCTTCTGTTTATCCTTCTTTTCGTGTGGGTCTTGTTGCTGCTACTGTACATCTTATTCTTTGCCTTCTTCGCGGTTTCTTCTTTTTCTCTGTTTATGATGTACTTACTTCACCACTAAACATTGACGTCACATCGCTTATTACAATTTTAATGTATTTTCCAGGGATGATGATCTTGACACGCCAAACAAATGGCATGTTTACGTGACTGGCCATAGTCTTGGTGGTGCATTGGCTACTCTTCTCGCTCTTGAACTATCATCAAGTCAACTAGCTAAGTGAGCTCCTCCTTTTCTCTGCTTGTATCTGTAGCTTGTTTCCCATCCATTCTATATAATTTACCATTTACCAGCATCTCGCCAATAGGGCATGCATGTTTGGTTTTCTGCTTTGTATTTAACATGTTTGTAGTGTTCTTTGAGAATTTGAAATGCCTTACTTGAGCAGAGGGTCTATGGAAAACAACCTCTCTATCTCTACGAGGTAGGGTAACGTTTGCATACACTCTACCCTCCTTAGACCCCACCTGTGGACTTGTTTTTTTTTTTTTAAGAGCAGAAGTTGTAGAATTGTTGGTAGAATCCTATCAAATGTAGTTTCGATGCTAGTTACGTAAATAAACCTAACCATGGACTTGTATTCCAGTCTTATATCTATACTGATCAGTATTTGAATGTGTGACATTTTGTACCCAAAACTAATGTGCTACCAAGCTGCAGCACATCCCTTCAATTGTTCCATGTTGCCACTTTGATATCTTCTCTTGATGGTTTCATCCTTTTGACCAAATTGGACTTGTAGGTCCCCAAGTATTGTGATTGCTAAGTTGCTTGCTGCTTGTTCCATCATAATAGAACATCTTGCAAATTAAGGAGTTAGTGCAAAAAGAACGTCTGCAATTGTTAAATACAAATTTTCGGGCTGCCCTTGTTCTTGAAGTACTTGTGGAGAAAAACCAAGTCCTCCATCTCTAATCATGCTAACACTACATACGTGACCGTCTTATCTTTCTTGTTGGTTGTGTTAGGCGTGGAGCTATACGTGTGACCATGTA</genome_strand>
        <mrna_strand>AAAAGCAAGGTGAAATGGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAAAGAGCCAATGTGGAATGAGGAGTTTGCTTTAAATATTAAGCAGCCACCTCTGTATGATCTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAGCTTGGGATGCAAATCTGGTGACTCCACATAAACGCATGGGAAATGCAGCAGTTAATTTGGAACATCTCTGTGATG.....................................................................................................................................................................................................................................................................................................................................................................................GAGATTCTCATAAACTGCTGGTTGATTTGGATGGAATGGGCGGTGGTGGGAAGATAGAGATAGAG............................................................................................................................................................................................................................ATTAAGTACAAGAGTTTTGAGAAAATTGAAGAAGAAAAGAAGTGGTGGAACATCCCAATCATTACAGAATTTCTAAGAAAAAACGGGTTTGAGTCTGCTTTGAAGACAATTCTTGGTTCCGAGACTGTTCAAGCTCGACAATTTGTACAGTTTGCGTTTGGACAGATGAAGCTACTTAATGATGCATATAATGATTCAAATAGCAGCAGCAGTCCTGTCCTGGAATCAGATGTACTACCGGAGTCGCAGCAATCATCCAACTTGGATGACTCAAGCATGCCCCCAGCATCAGAAATCTCAAATAATTTGAAAGACACCAAAGTTGATGGTGAAGTGAAGCTTAATCGTGATGGAAGTGACGTAACCGATGAACATGATTCCCCTGGTACTAAAATTTTAGAGAGCTTTCAATCAGATAAACATTTCTGGAAGAATTTTGCTGATACCGTCAATCAAAAAGTTGTTCAAAGACTTGGTCTCCCTGCTCCTGAGAAAATAAAGTGGGATAATCTTGACTTGTTAAATAAGATTGGATTGCAATCACGAAAAGACGCGGATGCAAGTTATGTTGAATCTGGTCTTGCAACTCCTGATAAACGAGAAAATGTTAATGGTAGTGCATCAACTGAATCACCTATTCTTAATAACATTCAGTCATCACTTCCAGATATCAAGAAGGTGACACAAGACTTATTGCGTCAAACTGATACCATTTTGGGAGCATTGATGGTTCTAAATGCCACAGTTTCTCAATTCAACAAAGGAGCAGGCCTTTTCGGAAAGGGTGATGCTAAAGAAGATTCTTCAACTGGACTGGAAAATGACATCCTTTTATATCCCATGAATAAAGATGGAATAGTGTTGGATGAGAAGAAAGCTGAGGAGATGAAGTCTCTTTTCTCAACAGCGGAGACTGCCATGGAAGCTTGGGCACTGCTAGCTACTTCATTGGGACATCCGACATTCATCAAATCTGAATTTGACAAATTATGCTTCTTAGATAATGAGTCAACTGACACAGAG.................................................................................................................GTAGCGCTCTGGCGTGATTCAGCAAGGAAACGGTTAGTTGTTGCTTTCAGGGGAACAGAACAA...............................................................................ACAAAATGGAAGGATCTTGTGACGGACTTGATGCTAGTTCCTGCAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAATCCTGAAAGGATAGGCGGGGACTTCAAGGAAGAAGTTCAG............................................................................................................GTTCACAGTGGTTTCCTAAGTGCATATGATTCAGTTAGGATTAGGCTCATCTCGCTTATCAAAAAAGCAATTGGCTACCA..................................................................................................................................................................................................................................................................................................................................................................................GGATGATGATCTTGACACGCCAAACAAATGGCATGTTTACGTGACTGGCCATAGTCTTGGTGGTGCATTGGCTACTCTTCTCGCTCTTGAACTATCATCAAGTCAACTAGCTAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGAGCTATACGTGTGACCATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332253" ref_strand="+" ref_description="SGN-U332253        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>gcaagtgatccatatggctcaaggtgcagttgatggagtgaagaacacacttggaattggatcagacaaaaagtgaaaaagagaaaatgaaattaattaattaattaattaattaattaacacatttatcaatttatatatctcaattttaattaatttttcatttaattctatgattttcacatatgctttagattattaagcataagtgaaaaaacataatattattagtttgtgagatctctcaccaaaagaattacaaaatttaattcttataaagtgagatgattttcataggtttggtttaattattgtttaacaattccatgcaccttatattggtgttatagtgaattttgttttattgatcgagatttctctcgttagaaattctcattataagtacgtaataagaaagttttattttgtttttgttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="72234" stop="71197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71934" g_stop="71498" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="438" polyA_stop="454"/>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-U332253" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71934" e_stop="71498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGTGATCCATATGGCTCAAGGTGCAGTTGATGGAGTGAAGAACACACTTGGAATTGGATCAGACAAAAAGTGAAAAAGAGAAAATGAAATTAATTAATTAATTAATTAATTAATTAACACATTTATCAATTTATATATCTCAATTTTAATTAATTTTTCATTTAATTCTATGATTTTCACATATGCTTTAGATTATTAAGCATAAGTGAAAAAACATAATATTATTAGTTTGTGAGATCTCTCACCAAAAGAATTACAAAATTTAATTCTTATAAAGTGAGATGATTTTCATAGGTTTGGTTTAATTATTGTTTAACAATTCCATGCACCTTATATTGGTGTTATAGTGAATTTTGTTTTATTGATCGAGATTTCTCTCGTTAGAAATTCTCATTATAAGTACGTAATAAGAAAGTTTTATTTTGTTTTTGTTA</genome_strand>
        <mrna_strand>GCAAGTGATCCATATGGCTCAAGGTGCAGTTGATGGAGTGAAGAACACACTTGGAATTGGATCAGACAAAAAGTGAAAAAGAGAAAATGAAATTAATTAATTAATTAATTAATTAATTAACACATTTATCAATTTATATATCTCAATTTTAATTAATTTTTCATTTAATTCTATGATTTTCACATATGCTTTAGATTATTAAGCATAAGTGAAAAAACATAATATTATTAGTTTGTGAGATCTCTCACCAAAAGAATTACAAAATTTAATTCTTATAAAGTGAGATGATTTTCATAGGTTTGGTTTAATTATTGTTTAACAATTCCATGCACCTTATATTGGTGTTATAGTGAATTTTGTTTTATTGATCGAGATTTCTCTCGTTAGAAATTCTCATTATAAGTACGTAATAAGAAAGTTTTATTTTGTTTTTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317132" ref_strand="+" ref_description="SGN-U317132        Tomato 200607 #1 [20 ESTs aligned] arabidopsis/peptide: AT3G23920.1 | Symbol: None | beta-amylase, putative / 1,4-alpha-D-glucan maltohydrolase, putative, similar to beta-amylase enzyme (Arabidopsis thaliana) GI:6065749, beta-amylase PCT-BMYI from (Solanum tuberosum); contains Pfam profile PF01373: Glycosyl hydrolase family 14 | chr3:8641576-8644456 FORWARD | Aliases: F14O13.12 (evalue: 0, score=711) genbank/nr: beta-amylase(evalue: 0, score=803)">
      <seq>aaaacatggactcaaagttcaagctgtgatgtctttccatcaatgcggtggtaacgtcggcgattcctgcacgatccctcttccgaggtgggttgttgaggagatggagaaggatccagatcttgcatacacagatcagtggggaaggaggaattttgaatatgtatcgcttggttgcgatacacttccagttcttaaaggaaggactcctgttcaatgctattctgatttcatgagagggtttagagatagatttgagaatctcttaggtgataccattgtggaaattcaagtcgggatgggtccagctggtgagctccgttatccatcctatcccgaaaaagatggaatatggaagttccctggaatcggtgcttttcagtgttatgataagtacatgatcggtagcttacagggtgcagcggaagcatttggtaagcctgaatggggacacaccggtccaaccgatgctggtgagtacaacaattggccagaagatacaaactttttcaagaaggaaggtggtggatgggatagtcaatacggggagttcttcctcacttggtattctcaaatgcttttgaaccatggcgagaggatactgcaatcatccaaggcgatattcgaggacaaaggtgtgaagatttcagttaagattgcaggtatccactggcactatggaacaaggtcccatgcccctgagttgactgctggatactacaacactcgtaaccgagatggttaccttcccatcgcccaaatgcttgcccgccacggtgcagttttcaacttcacatgtgttgaaatgcgtgaccacgagcagccacaagatgcacaatgtgcacctgagaagttggttaggcaggtggcgttagcaactcaggaagctcaagttccacttgctggggagaatgcattgccacgatacgatgattatgctcatgaacagatccttcaagcgtcctcgttgagcatcaacgatcaatcaggtgatagagagatgagcgcgtttacatacttgaggatgaatcctgacttattccatcctgataactggagacgattcgttgcctttgtgaagaaaatgaaagaaggaaaagacgctaacaaatgccgcgaacaggtagagagggaagcagagcatttcgttcatataactcagccgttagtacaagaagctgcagtagccctaatgcactaagcaaatcgttgtcaaatagtactgttttaatttgatccttttagctaacatgaagtttttcaacatgttacctggatcttatagctcgttatcgttgttcttaaatgtttgtaaaactgttcatcgtgtagtttttttaaagctagacattatgtcttaatgaaatgatacataattcagtagtaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="76772" stop="73989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76472" g_stop="76401" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76400" i_stop="75788" i_length="613">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75787" g_stop="75577" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="283" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75576" i_stop="75498" i_length="79">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75497" g_stop="75387" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="394" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75386" i_stop="75288" i_length="99">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75287" g_stop="74294" g_length="994"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="1387" r_length="993" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1388" polyA_stop="1426"/>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-U317132" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1388</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76472" e_stop="76401"/>
          <exon e_start="75787" e_stop="75577"/>
          <exon e_start="75497" e_stop="75387"/>
          <exon e_start="75287" e_stop="74294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACATGGACTCAAAGTTCAAGCTGTGATGTCTTTCCATCAATGCGGTGGTAACGTCGGTGATTCCTGCACGTATGTATATTTTCTCCGATGCTATTTTTAATTCGTTTTAACTGCAAATTTGTGATTACCAGATTCAAAATCTAGATCTGTTATAATGAATACCGTCAAATCAAACATGATATAACTCGCATCTCAAAAGCTAATTCGAGATATTTTCACATCGGATGTGGCCTGACTATCATAACATGTCAAATTAGTATTTTATCGTAGTTTAACCTCACAAAAAGCTAACTTAAAAGGGAGAAGCATTGCTCGAAACGAGTGGAGAGATATCATTCCTCGTCGAGGTGGTAAATCTCTTCAACAAATACTTTTAGATAAAAGATTCATAGGATCTGGAAAAGATTAAAGAAGAAAGTTCAAAAAAAGGTTAGTGGATAGTGAGAATATGCTCCTTTATATGTGTGCTAAATGAACTATTTAAAGTAACTATATTTTATCTGGAAAGATAAATGACTTTATAATAGATTGGAATCAACCTGAATAGCATAAAATGGAATATGGAAGATTCATGAATAATTCAATTATCTTTGTTTAATTTTCATTCGAGTTCTGTTATGCGTTTTGATTTCTACTAATCGCGATGTATAGGCGTTGCTTAAGTAGATTTTTGAAATTTCAGGATCCCTCTTCCGAGGTGGGTTGTTGAGGAGATGGAGAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTTCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTCTTAGGTGATACCATTGTGGTAAGTGCTATGTTTTTTTCGAATTTTTGATCGAAGAGTAGAAGACTCACTTTTTTAATCCAAATGACGTGTGATATAGGAAATTCAAGTCGGGATGGGTCCAGCTGGTGAGCTCCGTTATCCATCCTATCCCGAAAAAGATGGAATATGGAAGTTCCCTGGAATCGGTGCTTTTCAGTGTTATGATAAGGTATAAAGCAAGTTCTGTTTTCTATGGTGTGTTTTAGTGTTTAACGTCGTCATTATTACTGATGATTTGTTCTGTTAAATGTATTGTATCGCGTTGCAGTACATGATCGGTAGCTTACAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTGAGTACAACAATTGGCCAGAAGATACAAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATACGGGGAGTTCTTCCTCACTTGGTATTCTCAAATGCTTTTGAACCATGGCGAGAGGATACTGCAATCATCCAAGGCGATATTCGAGGACAAAGGTGTGAAGATTTCAGTTAAGATTGCAGGTATCCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGTTGACTGCTGGATACTACAACACTCGTAACCGAGATGGTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACTGTTTTAATTTGATCCTTTTAGCTAACATGAAGTTTTTCAACATGTTACCTGGATCTTATAGCTCGTTATCGTTGTTCTTAAATGTTTGTAAAACTGTTCATCGTGTAGTTTTTTTAAAGTCTAGACATTATGTCTTAATGAAATGATACATAATTCAGTAGTAA</genome_strand>
        <mrna_strand>AAAACATGGACTCAAAGTTCAAGCTGTGATGTCTTTCCATCAATGCGGTGGTAACGTCGGCGATTCCTGCAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCCTCTTCCGAGGTGGGTTGTTGAGGAGATGGAGAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTTCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTCTTAGGTGATACCATTGTG...............................................................................GAAATTCAAGTCGGGATGGGTCCAGCTGGTGAGCTCCGTTATCCATCCTATCCCGAAAAAGATGGAATATGGAAGTTCCCTGGAATCGGTGCTTTTCAGTGTTATGATAAG...................................................................................................TACATGATCGGTAGCTTACAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTGAGTACAACAATTGGCCAGAAGATACAAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATACGGGGAGTTCTTCCTCACTTGGTATTCTCAAATGCTTTTGAACCATGGCGAGAGGATACTGCAATCATCCAAGGCGATATTCGAGGACAAAGGTGTGAAGATTTCAGTTAAGATTGCAGGTATCCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGTTGACTGCTGGATACTACAACACTCGTAACCGAGATGGTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACTGTTTTAATTTGATCCTTTTAGCTAACATGAAGTTTTTCAACATGTTACCTGGATCTTATAGCTCGTTATCGTTGTTCTTAAATGTTTGTAAAACTGTTCATCGTGTAGTTTTTTTAAAG-CTAGACATTATGTCTTAATGAAATGATACATAATTCAGTAGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317131" ref_strand="+" ref_description="SGN-U317131        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: AT3G23920.1 | Symbol: None | beta-amylase, putative / 1,4-alpha-D-glucan maltohydrolase, putative, similar to beta-amylase enzyme (Arabidopsis thaliana) GI:6065749, beta-amylase PCT-BMYI from (Solanum tuberosum); contains Pfam profile PF01373: Glycosyl hydrolase family 14 | chr3:8641576-8644456 FORWARD | Aliases: F14O13.12 (evalue: 2e-19, score=92.4) genbank/nr: beta-amylase(evalue: 4e-51, score=203)">
      <seq>aaaaaaaaaaattaaaaaaattcatcatttttaatctgcaaaaaaaaaaattagttataatattattattattatggcaatgagtctgccacaccagatcggtgccttatcaggaacatcgctcacggcggaaaccggtggagtttcatgcgaagttccggcgaaggggagttcagctacatcagctatgtggagaacaccgatgacgaatttaaaagtatcggtgcaaaaaacaggaaatgaaattgacagggtgtcgccgtcgccgtcgccgccgatgagtccgatgatgggaggaggaatgcgaccggatttatcggtagcgtgtcaagcgttgatggaggctcaggtagaggaggtagttgagagagaatataaggttaggaattcgtcggagaaagagaaaggtgttccggtgtttgttatgatgccgttggatagtgtgaaaacggatcatactgtgaatagaaaaaaggcgatgaatgcgagtttacaggcgttgaaatgcgtgacggtgtgcagccacaagatgcacaatgatggatgtgtggtgggggttaggcaggtggcgttagatgcaccgggagagtataattggggcggttatgctgagcttatggaaatggcgaaaaacatggactcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0037E15-gPBtC/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLe0037E15.1" temp_strand="-" temp_description="C09SLe0037E15.1  AC234359.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0037E15 upload_account_name:spain (1 - 82597)">
        <position start="77388" stop="76158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77088" g_stop="76458" g_length="631"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="644" r_length="644" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0037E15.1" gen_strand="-" ref_id="SGN-U317131" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0037E15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77088" e_stop="76458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAAAATTAAAAAAAATTCATCATTTTTAATCTGCAAAAAAAAAAATTAGTTATAATATTATTATTATTATGGCAATGAGTCTGCCACACCAGATCGGTGCCTTATCAGGAACATCGCTCACGGCGGAAACCGGTGGAGTTTCATGCGAAGTTCCGGCGAAGGGGAGTTCAGCTACATCAGCTATGTGGAGAACACCGATGACGAATTTAAAAGTATCGGTGCAAAAAACAGGAAATGAAATTGACAGGGTGTCGCCGTCGCCGTCGCCGCCGATGAGTCCGATGATGGGAGGAGGAATGCGACCGGATTTATCGGTAGCGTGTCAAGCGTTGATGGAGGCTCAGGTAGAGGAGGTAGTTGAGAGAGAATATAAGGTTAGGAATTCGTCGGAGAAAGAGAAAGGTGTTCCGGTGTTTGTTATGATGCCGTTGGATAGTGTGAAAACGGATCATACTGTGAATAGAAAAAAGGCGATGAATGCGAGTTTACAGGCGTTGAAAAGC--GCCGGTGTG--G----AAG--GGATTATGATGGATGTGTGGTGGGGATT-GG----TGGAGAGAGATGCACCGGGAGAGTATAATTGGGGCGGTTATGCTGAGCTTATGGAAATGGCGAAAAAACATGGACTCAA</genome_strand>
        <mrna_strand>AAAAAAAAAAATTAAAA-AAATTCATCATTTTTAATCTGCAAAAAAAAAAATTAGTTATAATATTATTATTATTATGGCAATGAGTCTGCCACACCAGATCGGTGCCTTATCAGGAACATCGCTCACGGCGGAAACCGGTGGAGTTTCATGCGAAGTTCCGGCGAAGGGGAGTTCAGCTACATCAGCTATGTGGAGAACACCGATGACGAATTTAAAAGTATCGGTGCAAAAAACAGGAAATGAAATTGACAGGGTGTCGCCGTCGCCGTCGCCGCCGATGAGTCCGATGATGGGAGGAGGAATGCGACCGGATTTATCGGTAGCGTGTCAAGCGTTGATGGAGGCTCAGGTAGAGGAGGTAGTTGAGAGAGAATATAAGGTTAGGAATTCGTCGGAGAAAGAGAAAGGTGTTCCGGTGTTTGTTATGATGCCGTTGGATAGTGTGAAAACGGATCATACTGTGAATAGAAAAAAGGCGATGAATGCGAGTTTACAGGCGTTGAAATGCGTGACGGTGTGCAGCCACAAGATGCACAATGATGGATGTGTGGTGGGGGTTAGGCAGGTGGCGTTAGATGCACCGGGAGAGTATAATTGGGGCGGTTATGCTGAGCTTATGGAAATGGCG-AAAAACATGGACTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>9</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="5448" PGL_stop="6661"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5448" e_stop="5514"/>
            <exon e_start="5971" e_stop="6035"/>
            <exon e_start="6119" e_stop="6213"/>
            <exon e_start="6293" e_stop="6661"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.535" e_score="1.000"/>
          <exon-intron don_prob="0.842" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5448" e_stop="5514" e_length="67"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.535">
            <gDNA_intron_boundary i_start="5515" i_stop="5970" i_length="456"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5971" e_stop="6035" e_length="65"/>
          </exon>
          <intron i_serial="2" don_prob="0.842" acc_prob="0.985">
            <gDNA_intron_boundary i_start="6036" i_stop="6118" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6119" e_stop="6213" e_length="95"/>
          </exon>
          <intron i_serial="3" don_prob="0.973" acc_prob="1.000">
            <gDNA_intron_boundary i_start="6214" i_stop="6292" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="6293" e_stop="6661" e_length="369"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5448" stop="5514"/>
              <exon start="5971" stop="6035"/>
              <exon start="6119" stop="6213"/>
              <exon start="6293" stop="6661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327921" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTCAGGGTAAGCGGCGTCCATTTGTCGTGGAAACCGTGAAGGCAGATGATGAAGCAAAATTTG : GAAGAGGTCCTTCTCAACCTGCTCCAAAGTTTGTTGGAAATTTAATAGCATTTCTTCTCAACATA : GTCGGACCGAAGGGTCTAGAATTTGCACGTTACTCGCTAGATTATCACACAATCAGAAATTACTTAAACGTAGTCCGCAAATGGGGAAAAGAAAG : AGCGGACAGACATATGCCTGAATATGCAAAGAAAATTGTTAGCATGTACAACGAGAGTGGAGAAATTGATCAAATGCTTTCCAAAAAGTGAATAATTTGATGGTAGAACTTTGGCATTTGCAACTCAAGCTTTGGTGAACAAAGTTATCCGGTACCTATGCTGGTGGAAGGTAGCAAGTATCCCATAGAGTAGTCGAGGTGCGTGCGAGCTAACCCGTACACCATGGTTATCAAAAAAATGTTGGTGATTGCAACTCTTCATGTACGTGTATAGTGTCTAATTAAACACACATCAGAATTAACTCTTTTTGATAGAATTGTAATTCCTTTTATAATAATTAACTATGTTGACCATTGGTAAAAACAACT</gDNA_template>
            <first_frame> F  F  Q  G  K  R  R  P  F  V  V  E  T  V  K  A  D  D  E  A  K  F   : G  R  G  P  S  Q  P  A  P  K  F  V  G  N  L  I  A  F  L  L  N  I  :  V  G  P  K  G  L  E  F  A  R  Y  S  L  D  Y  H  T  I  R  N  Y  L  N  V  V  R  K  W  G  K  E  R :   A  D  R  H  M  P  E  Y  A  K  K  I  V  S  M  Y  N  E  S  G  E  I  D  Q  M  L  S  K  K  *  I  I  *  W  *  N  F  G  I  C  N  S  S  F  G  E  Q  S  Y  P  V  P  M  L  V  E  G  S  K  Y  P  I  E  *  S  R  C  V  R  A  N  P  Y  T  M  V  I  K  K  M  L  V  I  A  T  L  H  V  R  V  *  C  L  I  K  H  T  S  E  L  T  L  F  D  R  I  V  I  P  F  I  I  I  N  Y  V  D  H  W  *  K  Q   </first_frame>
            <second_frame>  F  F  R  V  S  G  V  H  L  S  W  K  P  *  R  Q  M  M  K  Q  N  L  :  E  E  V  L  L  N  L  L  Q  S  L  L  E  I  *  *  H  F  F  S  T  * :   S  D  R  R  V  *  N  L  H  V  T  R  *  I  I  T  Q  S  E  I  T  *  T  *  S  A  N  G  E  K  K   : E  R  T  D  I  C  L  N  M  Q  R  K  L  L  A  C  T  T  R  V  E  K  L  I  K  C  F  P  K  S  E  *  F  D  G  R  T  L  A  F  A  T  Q  A  L  V  N  K  V  I  R  Y  L  C  W  W  K  V  A  S  I  P  *  S  S  R  G  A  C  E  L  T  R  T  P  W  L  S  K  K  C  W  *  L  Q  L  F  M  Y  V  Y  S  V  *  L  N  T  H  Q  N  *  L  F  L  I  E  L  *  F  L  L  *  *  L  T  M  L  T  I  G  K  N  N  </second_frame>
            <third_frame>   F  S  G  *  A  A  S  I  C  R  G  N  R  E  G  R  *  *  S  K  I  W :   K  R  S  F  S  T  C  S  K  V  C  W  K  F  N  S  I  S  S  Q  H   : S  R  T  E  G  S  R  I  C  T  L  L  A  R  L  S  H  N  Q  K  L  L  K  R  S  P  Q  M  G  K  R  K  :  S  G  Q  T  Y  A  *  I  C  K  E  N  C  *  H  V  Q  R  E  W  R  N  *  S  N  A  F  Q  K  V  N  N  L  M  V  E  L  W  H  L  Q  L  K  L  W  *  T  K  L  S  G  T  Y  A  G  G  R  *  Q  V  S  H  R  V  V  E  V  R  A  S  *  P  V  H  H  G  Y  Q  K  N  V  G  D  C  N  S  S  C  T  C  I  V  S  N  *  T  H  I  R  I  N  S  F  *  *  N  C  N  S  F  Y  N  N  *  L  C  *  P  L  V  K  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0037E15.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5448" stop="5514"/>
                    <exon start="5971" stop="6035"/>
                    <exon start="6119" stop="6213"/>
                    <exon start="6293" stop="6383"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFQGKRRPFVVETVKADDEAKFGRGPSQPAPKFVGNLIAFLLNIVGPKGLEFARYSLDYHTIRNYLNVVRKWGKERADRHMPEYAKKIVSMYNESGEIDQMLSKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="12396" PGL_stop="10873"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12396" e_stop="12259"/>
            <exon e_start="11858" e_stop="11487"/>
            <exon e_start="11137" e_stop="10873"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12396" e_stop="12259" e_length="138"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="12258" i_stop="11859" i_length="400"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11858" e_stop="11487" e_length="372"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="11486" i_stop="11138" i_length="349"/>
          </intron>
          <exon e_serial="3" e_score="0.966">
            <gDNA_exon_boundary e_start="11137" e_stop="10873" e_length="265"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12396" stop="12259"/>
              <exon start="11858" stop="11487"/>
              <exon start="11137" stop="10873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327685" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATGCTTGTGACTATAAAACAGGGGAAGTTTATGAAGGGAAGAATGTGTTAGTTGTTGGATGTGGTAATTCAGGCATGGAAGTTTCACTTGATCTTTGTCACCATAATGCAAGTCCATTCATGGTCGTTCGAAGCTCG : GTTCATGTTTTACCAAGGGAAATACTCGGAAAATCAACGTTTGAGTTAGGAGTATCAATGATGAAATGGCTATCAATTGATGTAGTTGACAAGATATTACTAGTTGCAGCAAGGTTACTTCTTGGAAACATAGAAAAGTATGGTTTAAAAAGGCCATCCATTGGACCTTTACAACTCAAGAATACAGAAGGAAAAACTCCAGTTCTAGACATAGGTGCATTACAAAAGATTAAAACAGGAGACATAAAGATAGTTCCAGCAATCAAAAAATTTTCTCAAGGAAAAGTAGAATTTGTCAATGGAGAAATACAAGAAATTGATTGTATCATTTTGGCAACAGGATATTGCAGCAATGTTCCTTCTTGGTTAAAG : GAAAGTGAATTCTTTTCAAGGGGAGGGATTTCCAAGAAGTCCATTTCCAAATGGATGGAAAGGAAAAGCTGGTTTATATGCAGTTGGATTTACAAAGAGAGGACTTTTCTGGTGCATCTTTGGATGCAATTAAAGTATCACAAGATATTGGAAAAAATTTGGAAAGAAAGAAAATTAAAACAAGAAAAAATACAATCTGTTGCTGTTGCATGTCATAGAAGAAACAAGTTATCTTCCTTCTAGTAAACGACAACAACATACTCAG</gDNA_template>
            <first_frame> H  A  C  D  Y  K  T  G  E  V  Y  E  G  K  N  V  L  V  V  G  C  G  N  S  G  M  E  V  S  L  D  L  C  H  H  N  A  S  P  F  M  V  V  R  S  S  :  V  H  V  L  P  R  E  I  L  G  K  S  T  F  E  L  G  V  S  M  M  K  W  L  S  I  D  V  V  D  K  I  L  L  V  A  A  R  L  L  L  G  N  I  E  K  Y  G  L  K  R  P  S  I  G  P  L  Q  L  K  N  T  E  G  K  T  P  V  L  D  I  G  A  L  Q  K  I  K  T  G  D  I  K  I  V  P  A  I  K  K  F  S  Q  G  K  V  E  F  V  N  G  E  I  Q  E  I  D  C  I  I  L  A  T  G  Y  C  S  N  V  P  S  W  L  K  :  E  S  E  F  F  S  R  G  G  I  S  K  K  S  I  S  K  W  M  E  R  K  S  W  F  I  C  S  W  I  Y  K  E  R  T  F  L  V  H  L  W  M  Q  L  K  Y  H  K  I  L  E  K  I  W  K  E  R  K  L  K  Q  E  K  I  Q  S  V  A  V  A  C  H  R  R  N  K  L  S  S  F  *  *  T  T  T  T  Y  S  </first_frame>
            <second_frame>  M  L  V  T  I  K  Q  G  K  F  M  K  G  R  M  C  *  L  L  D  V  V  I  Q  A  W  K  F  H  L  I  F  V  T  I  M  Q  V  H  S  W  S  F  E  A  R :   F  M  F  Y  Q  G  K  Y  S  E  N  Q  R  L  S  *  E  Y  Q  *  *  N  G  Y  Q  L  M  *  L  T  R  Y  Y  *  L  Q  Q  G  Y  F  L  E  T  *  K  S  M  V  *  K  G  H  P  L  D  L  Y  N  S  R  I  Q  K  E  K  L  Q  F  *  T  *  V  H  Y  K  R  L  K  Q  E  T  *  R  *  F  Q  Q  S  K  N  F  L  K  E  K  *  N  L  S  M  E  K  Y  K  K  L  I  V  S  F  W  Q  Q  D  I  A  A  M  F  L  L  G  *  R :   K  V  N  S  F  Q  G  E  G  F  P  R  S  P  F  P  N  G  W  K  G  K  A  G  L  Y  A  V  G  F  T  K  R  G  L  F  W  C  I  F  G  C  N  *  S  I  T  R  Y  W  K  K  F  G  K  K  E  N  *  N  K  K  K  Y  N  L  L  L  L  H  V  I  E  E  T  S  Y  L  P  S  S  K  R  Q  Q  H  T  Q </second_frame>
            <third_frame>   C  L  *  L  *  N  R  G  S  L  *  R  E  E  C  V  S  C  W  M  W  *  F  R  H  G  S  F  T  *  S  L  S  P  *  C  K  S  I  H  G  R  S  K  L   : G  S  C  F  T  K  G  N  T  R  K  I  N  V  *  V  R  S  I  N  D  E  M  A  I  N  *  C  S  *  Q  D  I  T  S  C  S  K  V  T  S  W  K  H  R  K  V  W  F  K  K  A  I  H  W  T  F  T  T  Q  E  Y  R  R  K  N  S  S  S  R  H  R  C  I  T  K  D  *  N  R  R  H  K  D  S  S  S  N  Q  K  I  F  S  R  K  S  R  I  C  Q  W  R  N  T  R  N  *  L  Y  H  F  G  N  R  I  L  Q  Q  C  S  F  L  V  K   : G  K  *  I  L  F  K  G  R  D  F  Q  E  V  H  F  Q  M  D  G  K  E  K  L  V  Y  M  Q  L  D  L  Q  R  E  D  F  S  G  A  S  L  D  A  I  K  V  S  Q  D  I  G  K  N  L  E  R  K  K  I  K  T  R  K  N  T  I  C  C  C  C  M  S  *  K  K  Q  V  I  F  L  L  V  N  D  N  N  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0037E15.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12396" stop="12259"/>
                    <exon start="11858" stop="11487"/>
                    <exon start="11137" stop="10895"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>750</number_coding_nucleotides>
                  <number_encoded_amino_acids>250</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HACDYKTGEVYEGKNVLVVGCGNSGMEVSLDLCHHNASPFMVVRSSVHVLPREILGKSTFELGVSMMKWLSIDVVDKILLVAARLLLGNIEKYGLKRPSIGPLQLKNTEGKTPVLDIGALQKIKTGDIKIVPAIKKFSQGKVEFVNGEIQEIDCIILATGYCSNVPSWLKESEFFSRGGISKKSISKWMERKSWFICSWIYKERTFLVHLWMQLKYHKILEKIWKERKLKQEKIQSVAVACHRRNKLSSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="26318" PGL_stop="26757"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26318" e_stop="26757"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="26318" e_stop="26757" e_length="440"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26318" stop="26757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344226" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATTGTAGATGACCAAATTTTTTTCCGAATACGAAATTAAATTACAATACACACAAAACAATAGTTTAATTTTTTTTCTTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGGATAAGAAACTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAAAATATACCTTGAACTTTTATAGAAGAATCATATGTACCACTAAATAATTTTTTTTAAAAATTATAAGTAATAAATATAAATTTAAAACTAATTATTTAACTTTCGTCAAATGAAGGGTATATGTGAGCCATTTTGTAACGGTAGGTGTATATGTGAGCCATTTGTATAACGGTAAGGGCATATATGAGCCACTTTCATAACGAGGGATGTATCAGCTCCAAATGACAAAGTTGAGGGGTATATCAGACCCTTTTCCCT</gDNA_template>
            <first_frame> L  L  *  M  T  K  F  F  S  E  Y  E  I  K  L  Q  Y  T  Q  N  N  S  L  I  F  F  L  *  T  K  E  *  K  K  K  T  K  *  G  *  E  T  Q  I  I  I  I  K  E  V  K  K  *  F  M  Y  E  K  N  *  K  I  Y  L  E  L  L  *  K  N  H  M  Y  H  *  I  I  F  F  K  N  Y  K  *  *  I  *  I  *  N  *  L  F  N  F  R  Q  M  K  G  I  C  E  P  F  C  N  G  R  C  I  C  E  P  F  V  *  R  *  G  H  I  *  A  T  F  I  T  R  D  V  S  A  P  N  D  K  V  E  G  Y  I  R  P  F  S   </first_frame>
            <second_frame>  Y  C  R  *  P  N  F  F  P  N  T  K  L  N  Y  N  T  H  K  T  I  V  *  F  F  F  F  K  L  R  N  E  R  K  K  Q  N  K  D  K  K  L  K  *  L  *  *  K  K  S  K  N  N  L  C  M  K  K  I  K  K  Y  T  L  N  F  Y  R  R  I  I  C  T  T  K  *  F  F  L  K  I  I  S  N  K  Y  K  F  K  T  N  Y  L  T  F  V  K  *  R  V  Y  V  S  H  F  V  T  V  G  V  Y  V  S  H  L  Y  N  G  K  G  I  Y  E  P  L  S  *  R  G  M  Y  Q  L  Q  M  T  K  L  R  G  I  S  D  P  F  P  </second_frame>
            <third_frame>   I  V  D  D  Q  I  F  F  R  I  R  N  *  I  T  I  H  T  K  Q  *  F  N  F  F  S  L  N  *  G  M  K  E  K  N  K  I  R  I  R  N  S  N  N  Y  N  K  R  S  Q  K  I  I  Y  V  *  K  K  L  K  N  I  P  *  T  F  I  E  E  S  Y  V  P  L  N  N  F  F  *  K  L  *  V  I  N  I  N  L  K  L  I  I  *  L  S  S  N  E  G  Y  M  *  A  I  L  *  R  *  V  Y  M  *  A  I  C  I  T  V  R  A  Y  M  S  H  F  H  N  E  G  C  I  S  S  K  *  Q  S  *  G  V  Y  Q  T  L  F  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0037E15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="55482" PGL_stop="52394"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55482" e_stop="55396"/>
            <exon e_start="53773" e_stop="52394"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.942" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="55482" e_stop="55396" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.942" acc_prob="0.000">
            <gDNA_intron_boundary i_start="55395" i_stop="53774" i_length="1622"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="53773" e_stop="52394" e_length="1380"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55482" stop="55396"/>
              <exon start="53773" stop="52394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320649" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTAGTTATCTGCCTCGGAACCTCCGAATTTTATAATCTTATAGGTAGAAGTGAAGAAAAAATCAGTAAAAATTCTGAGAATTTGAG : TCGGTGAAATGGCAGCAGCATCAGCAACTACTCTCTCAGTTGGTTCCGCCACATCCTTTGGCTCCATAGTGAGCCCAAAATTACAATCAAAGGCCTTTATTGCGAAATGCAATACCAGGGACTACCTTAGGAGTTTCAGTGGCCTTAAGGCAGAGGCATTTGTACGATGTGAATCCGAGTCGTCATTTCTAGGAAATGAAAGCATTGCAGCTCTTCGACAATCCATTACTCCTAAAGCCCGAAACCAAAAGCAGAGATCTTCGAACCATGTTCAGCCTCAAGCATCTTATAAAGTGGCTGTTCTCGGAGCCTCTGGCGGTATAGGCCAGCCTCTAGCTCTTCTGATTAAGATGTCACCGCTAGTATCATCGTTGCACCTTTATGATATTGCAAATGTCAAAGGAGTCGCAGCAGATCTCAGCCATTGCAACACTCCCGCTCAGGTTTTTGACTTTACGGGAGCTTCTGAGTTGGCCAATTCTTTGAAAGGTATAGATGTAGTTGTCATACCAGCTGGCGTTCCGAGAAAGCCTGGTATGACACGGGACGACTTGTTCAACATAAATGCTAATATTGTGAAAAGCTTGGTTGAGGCTGTTGCTGACAATTGCCCAGATGCCTTTATCCACATTATCAGCAATCCAGTCAACTCCACAGTGCCGATTGCTGCCGAGGTTCTGAAGCAAAAGGGTGTGTATGATCCTAAAAAACTCTTTGGTGTTACCACCCTGGACGTTGTCAGAGCAAACACATTCGTCGCGCAGAAGAAAAACCTGAAACTCATTGACGTTGACGTCCCCGTGATTGGTGGGCATGCAGGGATAACAATTCTGCCATTGCTGTCAAAGACAAGACCATCAACTACTTTCACGGACGAAGAAGTGCAGGAACTAACCGTGAGGATCCAAAACGCTGGGACCGAGGTCGTTGAAGCAAAGGCTGGAGCAGGATCTGCAACACTGTCAATGGCATATGCTGCAGCTAGATTTGTTGAATCCTCACTTCGTGCCCTTGACGGTGATGCTGATGTTTACGAGTGTTCTTACGTTCAATCTGACCTGACGGAACTTCCATTCTTTGCATCACGAGTTAAACTAGGAAGGAATGGAATCGAGGCATTGATTTCGTCTGATCTCCGTGGATTAACTGAGTATGAACAGAAGGCATTAGAAGCTCTAAAGATAGAGTTGAAAGCTAGCATTGAGAAAGGGATAGCTTATGCTCAAAAACAAACAGTGAGTGCTTAGAGAAAGAGTTTAGTTTAGATTAACTATAGGAAAAGATTCTCAACATGACAATTTTTGCATGGTTTGAACTTACTAAGCCCTTTATTCTTTTTATTGGTCTGAACTCTACTAGTGTTTTGTTATTGCTTCCTTT</gDNA_template>
            <first_frame> L  S  Y  L  P  R  N  L  R  I  L  *  S  Y  R  *  K  *  R  K  N  Q  *  K  F  *  E  F  E  :  S  V  K  W  Q  Q  H  Q  Q  L  L  S  Q  L  V  P  P  H  P  L  A  P  *  *  A  Q  N  Y  N  Q  R  P  L  L  R  N  A  I  P  G  T  T  L  G  V  S  V  A  L  R  Q  R  H  L  Y  D  V  N  P  S  R  H  F  *  E  M  K  A  L  Q  L  F  D  N  P  L  L  L  K  P  E  T  K  S  R  D  L  R  T  M  F  S  L  K  H  L  I  K  W  L  F  S  E  P  L  A  V  *  A  S  L  *  L  F  *  L  R  C  H  R  *  Y  H  R  C  T  F  M  I  L  Q  M  S  K  E  S  Q  Q  I  S  A  I  A  T  L  P  L  R  F  L  T  L  R  E  L  L  S  W  P  I  L  *  K  V  *  M  *  L  S  Y  Q  L  A  F  R  E  S  L  V  *  H  G  T  T  C  S  T  *  M  L  I  L  *  K  A  W  L  R  L  L  L  T  I  A  Q  M  P  L  S  T  L  S  A  I  Q  S  T  P  Q  C  R  L  L  P  R  F  *  S  K  R  V  C  M  I  L  K  N  S  L  V  L  P  P  W  T  L  S  E  Q  T  H  S  S  R  R  R  K  T  *  N  S  L  T  L  T  S  P  *  L  V  G  M  Q  G  *  Q  F  C  H  C  C  Q  R  Q  D  H  Q  L  L  S  R  T  K  K  C  R  N  *  P  *  G  S  K  T  L  G  P  R  S  L  K  Q  R  L  E  Q  D  L  Q  H  C  Q  W  H  M  L  Q  L  D  L  L  N  P  H  F  V  P  L  T  V  M  L  M  F  T  S  V  L  T  F  N  L  T  *  R  N  F  H  S  L  H  H  E  L  N  *  E  G  M  E  S  R  H  *  F  R  L  I  S  V  D  *  L  S  M  N  R  R  H  *  K  L  *  R  *  S  *  K  L  A  L  R  K  G  *  L  M  L  K  N  K  Q  *  V  L  R  E  R  V  *  F  R  L  T  I  G  K  D  S  Q  H  D  N  F  C  M  V  *  T  Y  *  A  L  Y  S  F  Y  W  S  E  L  Y  *  C  F  V  I  A  S  F </first_frame>
            <second_frame>  L  V  I  C  L  G  T  S  E  F  Y  N  L  I  G  R  S  E  E  K  I  S  K  N  S  E  N  L  S :   R  *  N  G  S  S  I  S  N  Y  S  L  S  W  F  R  H  I  L  W  L  H  S  E  P  K  I  T  I  K  G  L  Y  C  E  M  Q  Y  Q  G  L  P  *  E  F  Q  W  P  *  G  R  G  I  C  T  M  *  I  R  V  V  I  S  R  K  *  K  H  C  S  S  S  T  I  H  Y  S  *  S  P  K  P  K  A  E  I  F  E  P  C  S  A  S  S  I  L  *  S  G  C  S  R  S  L  W  R  Y  R  P  A  S  S  S  S  D  *  D  V  T  A  S  I  I  V  A  P  L  *  Y  C  K  C  Q  R  S  R  S  R  S  Q  P  L  Q  H  S  R  S  G  F  *  L  Y  G  S  F  *  V  G  Q  F  F  E  R  Y  R  C  S  C  H  T  S  W  R  S  E  K  A  W  Y  D  T  G  R  L  V  Q  H  K  C  *  Y  C  E  K  L  G  *  G  C  C  *  Q  L  P  R  C  L  Y  P  H  Y  Q  Q  S  S  Q  L  H  S  A  D  C  C  R  G  S  E  A  K  G  C  V  *  S  *  K  T  L  W  C  Y  H  P  G  R  C  Q  S  K  H  I  R  R  A  E  E  K  P  E  T  H  *  R  *  R  P  R  D  W  W  A  C  R  D  N  N  S  A  I  A  V  K  D  K  T  I  N  Y  F  H  G  R  R  S  A  G  T  N  R  E  D  P  K  R  W  D  R  G  R  *  S  K  G  W  S  R  I  C  N  T  V  N  G  I  C  C  S  *  I  C  *  I  L  T  S  C  P  *  R  *  C  *  C  L  R  V  F  L  R  S  I  *  P  D  G  T  S  I  L  C  I  T  S  *  T  R  K  E  W  N  R  G  I  D  F  V  *  S  P  W  I  N  *  V  *  T  E  G  I  R  S  S  K  D  R  V  E  S  *  H  *  E  R  D  S  L  C  S  K  T  N  S  E  C  L  E  K  E  F  S  L  D  *  L  *  E  K  I  L  N  M  T  I  F  A  W  F  E  L  T  K  P  F  I  L  F  I  G  L  N  S  T  S  V  L  L  L  L  P   </second_frame>
            <third_frame>   *  L  S  A  S  E  P  P  N  F  I  I  L  *  V  E  V  K  K  K  S  V  K  I  L  R  I  *   : V  G  E  M  A  A  A  S  A  T  T  L  S  V  G  S  A  T  S  F  G  S  I  V  S  P  K  L  Q  S  K  A  F  I  A  K  C  N  T  R  D  Y  L  R  S  F  S  G  L  K  A  E  A  F  V  R  C  E  S  E  S  S  F  L  G  N  E  S  I  A  A  L  R  Q  S  I  T  P  K  A  R  N  Q  K  Q  R  S  S  N  H  V  Q  P  Q  A  S  Y  K  V  A  V  L  G  A  S  G  G  I  G  Q  P  L  A  L  L  I  K  M  S  P  L  V  S  S  L  H  L  Y  D  I  A  N  V  K  G  V  A  A  D  L  S  H  C  N  T  P  A  Q  V  F  D  F  T  G  A  S  E  L  A  N  S  L  K  G  I  D  V  V  V  I  P  A  G  V  P  R  K  P  G  M  T  R  D  D  L  F  N  I  N  A  N  I  V  K  S  L  V  E  A  V  A  D  N  C  P  D  A  F  I  H  I  I  S  N  P  V  N  S  T  V  P  I  A  A  E  V  L  K  Q  K  G  V  Y  D  P  K  K  L  F  G  V  T  T  L  D  V  V  R  A  N  T  F  V  A  Q  K  K  N  L  K  L  I  D  V  D  V  P  V  I  G  G  H  A  G  I  T  I  L  P  L  L  S  K  T  R  P  S  T  T  F  T  D  E  E  V  Q  E  L  T  V  R  I  Q  N  A  G  T  E  V  V  E  A  K  A  G  A  G  S  A  T  L  S  M  A  Y  A  A  A  R  F  V  E  S  S  L  R  A  L  D  G  D  A  D  V  Y  E  C  S  Y  V  Q  S  D  L  T  E  L  P  F  F  A  S  R  V  K  L  G  R  N  G  I  E  A  L  I  S  S  D  L  R  G  L  T  E  Y  E  Q  K  A  L  E  A  L  K  I  E  L  K  A  S  I  E  K  G  I  A  Y  A  Q  K  Q  T  V  S  A  *  R  K  S  L  V  *  I  N  Y  R  K  R  F  S  T  *  Q  F  L  H  G  L  N  L  L  S  P  L  F  F  L  L  V  *  T  L  L  V  F  C  Y  C  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0037E15.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55396" stop="52527"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1245</number_coding_nucleotides>
                  <number_encoded_amino_acids>415</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VGEMAAASATTLSVGSATSFGSIVSPKLQSKAFIAKCNTRDYLRSFSGLKAEAFVRCESESSFLGNESIAALRQSITPKARNQKQRSSNHVQPQASYKVAVLGASGGIGQPLALLIKMSPLVSSLHLYDIANVKGVAADLSHCNTPAQVFDFTGASELANSLKGIDVVVIPAGVPRKPGMTRDDLFNINANIVKSLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVIGGHAGITILPLLSKTRPSTTFTDEEVQELTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDADVYECSYVQSDLTELPFFASRVKLGRNGIEALISSDLRGLTEYEQKALEALKIELKASIEKGIAYAQKQTVSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="61656" PGL_stop="60232"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61656" e_stop="61214"/>
            <exon e_start="60798" e_stop="60718"/>
            <exon e_start="60266" e_stop="60232"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="61656" e_stop="61214" e_length="443"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.933">
            <gDNA_intron_boundary i_start="61213" i_stop="60799" i_length="415"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60798" e_stop="60718" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="60717" i_stop="60267" i_length="451"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60266" e_stop="60232" e_length="35"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61656" stop="61214"/>
              <exon start="60798" stop="60718"/>
              <exon start="60266" stop="60232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346679" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGATGTTCTCTCTCGGTCTCTCCTATGGAGGTGGCTTGTCATAAATGAAGTGTGAAACTCTTGAACATGCTATTGAATATGCATTGGTGCGTTGTCTAACATGTCAGACCAACTTTTAGCAAGTTTGAGCCATAATCAGATGCCTTATCACATTGTTTGCCGATAGTTCATGGGAATTTCTTGCCTGTTCTTCTATTGTGACGTGGTGAACGGCTGTAACTAAATCACTTTCGCCTGCTTTGGAATCATACTGAGAGCTTAATTTTGTTAAATTCTGAGTGACTCTATATAATTAAGTTGCTTCTTATATTGTAGAAAGTTAAGGACAGCTGGAGGGTTGTAAATCACAGAGATATAATACCAACAGTTCCTCGCTTGATGGGCTACTGCCATGTTGCTCAACCTGTTTATTTGGCAGCTGGAGATCCGCAAAACACAATG : GATAATGTGGAACTCTTGGAAGATGGTTACCAAGGTGATGTTATCGGAGAGGCCACACCTGATGTTATTGTCAGTGAATTT : ATGAAAGGTGAAAAAGAACTTATTGAGAAAATACT</gDNA_template>
            <first_frame> F  D  V  L  S  R  S  L  L  W  R  W  L  V  I  N  E  V  *  N  S  *  T  C  Y  *  I  C  I  G  A  L  S  N  M  S  D  Q  L  L  A  S  L  S  H  N  Q  M  P  Y  H  I  V  C  R  *  F  M  G  I  S  C  L  F  F  Y  C  D  V  V  N  G  C  N  *  I  T  F  A  C  F  G  I  I  L  R  A  *  F  C  *  I  L  S  D  S  I  *  L  S  C  F  L  Y  C  R  K  L  R  T  A  G  G  L  *  I  T  E  I  *  Y  Q  Q  F  L  A  *  W  A  T  A  M  L  L  N  L  F  I  W  Q  L  E  I  R  K  T  Q  W :   I  M  W  N  S  W  K  M  V  T  K  V  M  L  S  E  R  P  H  L  M  L  L  S  V  N  L :   *  K  V  K  K  N  L  L  R  K  Y  </first_frame>
            <second_frame>  L  M  F  S  L  G  L  S  Y  G  G  G  L  S  *  M  K  C  E  T  L  E  H  A  I  E  Y  A  L  V  R  C  L  T  C  Q  T  N  F  *  Q  V  *  A  I  I  R  C  L  I  T  L  F  A  D  S  S  W  E  F  L  A  C  S  S  I  V  T  W  *  T  A  V  T  K  S  L  S  P  A  L  E  S  Y  *  E  L  N  F  V  K  F  *  V  T  L  Y  N  *  V  A  S  Y  I  V  E  S  *  G  Q  L  E  G  C  K  S  Q  R  Y  N  T  N  S  S  S  L  D  G  L  L  P  C  C  S  T  C  L  F  G  S  W  R  S  A  K  H  N   : G  *  C  G  T  L  G  R  W  L  P  R  *  C  Y  R  R  G  H  T  *  C  Y  C  Q  *  I   : Y  E  R  *  K  R  T  Y  *  E  N  T </second_frame>
            <third_frame>   *  C  S  L  S  V  S  P  M  E  V  A  C  H  K  *  S  V  K  L  L  N  M  L  L  N  M  H  W  C  V  V  *  H  V  R  P  T  F  S  K  F  E  P  *  S  D  A  L  S  H  C  L  P  I  V  H  G  N  F  L  P  V  L  L  L  *  R  G  E  R  L  *  L  N  H  F  R  L  L  W  N  H  T  E  S  L  I  L  L  N  S  E  *  L  Y  I  I  K  L  L  L  I  L  *  K  V  K  D  S  W  R  V  V  N  H  R  D  I  I  P  T  V  P  R  L  M  G  Y  C  H  V  A  Q  P  V  Y  L  A  A  G  D  P  Q  N  T  M  :  D  N  V  E  L  L  E  D  G  Y  Q  G  D  V  I  G  E  A  T  P  D  V  I  V  S  E  F  :  M  K  G  E  K  E  L  I  E  K  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0037E15.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61339" stop="61214"/>
                    <exon start="60798" stop="60718"/>
                    <exon start="60266" stop="60234"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVKDSWRVVNHRDIIPTVPRLMGYCHVAQPVYLAAGDPQNTMDNVELLEDGYQGDVIGEATPDVIVSEFMKGEKELIEKI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="67497" PGL_stop="61982"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67497" e_stop="67478"/>
            <exon e_start="66968" e_stop="66899"/>
            <exon e_start="66254" e_stop="66173"/>
            <exon e_start="65799" e_stop="65735"/>
            <exon e_start="65514" e_stop="64492"/>
            <exon e_start="64378" e_stop="64316"/>
            <exon e_start="64236" e_stop="64190"/>
            <exon e_start="63475" e_stop="63430"/>
            <exon e_start="63321" e_stop="63242"/>
            <exon e_start="62871" e_stop="62758"/>
            <exon e_start="62008" e_stop="61982"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.770" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.765" acc_prob="0.844" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="0.910" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.896" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.608" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.972" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="67497" e_stop="67478" e_length="20"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67477" i_stop="66969" i_length="509"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="66968" e_stop="66899" e_length="70"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="66898" i_stop="66255" i_length="644"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="66254" e_stop="66173" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="0.770" acc_prob="0.981">
            <gDNA_intron_boundary i_start="66172" i_stop="65800" i_length="373"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="65799" e_stop="65735" e_length="65"/>
          </exon>
          <intron i_serial="4" don_prob="0.765" acc_prob="0.844">
            <gDNA_intron_boundary i_start="65734" i_stop="65515" i_length="220"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="65514" e_stop="64492" e_length="1023"/>
          </exon>
          <intron i_serial="5" don_prob="0.942" acc_prob="0.895">
            <gDNA_intron_boundary i_start="64491" i_stop="64379" i_length="113"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="64378" e_stop="64316" e_length="63"/>
          </exon>
          <intron i_serial="6" don_prob="0.910" acc_prob="0.985">
            <gDNA_intron_boundary i_start="64315" i_stop="64237" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="64236" e_stop="64190" e_length="47"/>
          </exon>
          <intron i_serial="7" don_prob="0.960" acc_prob="0.896">
            <gDNA_intron_boundary i_start="64189" i_stop="63476" i_length="714"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="63475" e_stop="63430" e_length="46"/>
          </exon>
          <intron i_serial="8" don_prob="0.971" acc_prob="0.608">
            <gDNA_intron_boundary i_start="63429" i_stop="63322" i_length="108"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="63321" e_stop="63242" e_length="80"/>
          </exon>
          <intron i_serial="9" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="63241" i_stop="62872" i_length="370"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="62871" e_stop="62758" e_length="114"/>
          </exon>
          <intron i_serial="10" don_prob="0.991" acc_prob="0.972">
            <gDNA_intron_boundary i_start="62757" i_stop="62009" i_length="749"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="62008" e_stop="61982" e_length="27"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67497" stop="67478"/>
              <exon start="66968" stop="66899"/>
              <exon start="66254" stop="66173"/>
              <exon start="65799" stop="65735"/>
              <exon start="65514" stop="64492"/>
              <exon start="64378" stop="64316"/>
              <exon start="64236" stop="64190"/>
              <exon start="63475" stop="63430"/>
              <exon start="63321" stop="63242"/>
              <exon start="62871" stop="62758"/>
              <exon start="62008" stop="61982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321435" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAGCAAGGTGAAATGGGG : GACAAAAGAGCCAATGTGGAATGAGGAGTTTGCTTTAAATATTAAGCAGCCACCTCTGTATGATCTTCAG : ATTGCAGCTTGGGATGCAAATCTGGTGACTCCACATAAACGCATGGGAAATGCAGCAGTTAATTTGGAACATCTCTGTGATG : GAGATTCTCATAAACTGCTGGTTGATTTGGATGGAATGGGCGGTGGTGGGAAGATAGAGATAGAG : ATTAAGTACAAGAGTTTTGAGAAAATTGAAGAAGAAAAGAAGTGGTGGAACATCCCAATCATTACAGAATTTCTAAGAAAAAACGGGTTTGAGTCTGCTTTGAAGACAATTCTTGGTTCCGAGACTGTTCAAGCTCGACAATTTGTACAGTTTGCGTTTGGACAGATGAAGCTACTTAATGATGCATATAATGATTCAAATAGCAGCAGCAGTCCTGTCCTGGAATCAGATGTACTACCGGAGTCGCAGCAATCATCCAACTTGGATGACTCAAGCATGCCCCCAGCATCAGAAATCTCAAATAATTTGAAAGACACCAAAGTTGATGGTGAAGTGAAGCTTAATCGTGATGGAAGTGACGTAACCGATGAACATGATTCCCCTGGTACTAAAATTTTAGAGAGCTTTCAATCAGATAAACATTTCTGGAAGAATTTTGCTGATACCGTCAATCAAAAAGTTGTTCAAAGACTTGGTCTCCCTGCTCCTGAGAAAATAAAGTGGGATAATCTTGACTTGTTAAATAAGATTGGATTGCAATCACGAAAAGACGCGGATGCAAGTTATGTTGAATCTGGTCTTGCAACTCCTGATAAACGAGAAAATGTTAATGGTAGTGCATCAACTGAATCACCTATTCTTAATAACATTCAGTCATCACTTCCAGATATCAAGAAGGTGACACAAGACTTATTGCGTCAAACTGATACCATTTTGGGAGCATTGATGGTTCTAAATGCCACAGTTTCTCAATTCAACAAAGGAGCAGGCCTTTTCGGAAAGGGTGATGCTAAAGAAGATTCTTCAACTGGACTGGAAAATGACATCCTTTTATATCCCATGAATAAAGATGGAATAGTGTTGGATGAGAAGAAAGCTGAGGAGATGAAGTCTCTTTTCTCAACAGCGGAGACTGCCATGGAAGCTTGGGCACTGCTAGCTACTTCATTGGGACATCCGACATTCATCAAATCTGAATTTGACAAATTATGCTTCTTAGATAATGAGTCAACTGACACAGAG : GTAGCGCTCTGGCGTGATTCAGCAAGGAAACGGTTAGTTGTTGCTTTCAGGGGAACAGAACAA : ACAAAATGGAAGGATCTTGTGACGGACTTGATGCTAGTTCCTGCAGG : GTTGAATCCTGAAAGGATAGGCGGGGACTTCAAGGAAGAAGTTCAG : GTTCACAGTGGTTTCCTAAGTGCATATGATTCAGTTAGGATTAGGCTCATCTCGCTTATCAAAAAAGCAATTGGCTACCA : GGATGATGATCTTGACACGCCAAACAAATGGCATGTTTACGTGACTGGCCATAGTCTTGGTGGTGCATTGGCTACTCTTCTCGCTCTTGAACTATCATCAAGTCAACTAGCTAA : GCGTGGAGCTATACGTGTGACCATGTA</gDNA_template>
            <first_frame> K  S  K  V  K  W  G :   T  K  E  P  M  W  N  E  E  F  A  L  N  I  K  Q  P  P  L  Y  D  L  Q  :  I  A  A  W  D  A  N  L  V  T  P  H  K  R  M  G  N  A  A  V  N  L  E  H  L  C  D   : G  D  S  H  K  L  L  V  D  L  D  G  M  G  G  G  G  K  I  E  I  E  :  I  K  Y  K  S  F  E  K  I  E  E  E  K  K  W  W  N  I  P  I  I  T  E  F  L  R  K  N  G  F  E  S  A  L  K  T  I  L  G  S  E  T  V  Q  A  R  Q  F  V  Q  F  A  F  G  Q  M  K  L  L  N  D  A  Y  N  D  S  N  S  S  S  S  P  V  L  E  S  D  V  L  P  E  S  Q  Q  S  S  N  L  D  D  S  S  M  P  P  A  S  E  I  S  N  N  L  K  D  T  K  V  D  G  E  V  K  L  N  R  D  G  S  D  V  T  D  E  H  D  S  P  G  T  K  I  L  E  S  F  Q  S  D  K  H  F  W  K  N  F  A  D  T  V  N  Q  K  V  V  Q  R  L  G  L  P  A  P  E  K  I  K  W  D  N  L  D  L  L  N  K  I  G  L  Q  S  R  K  D  A  D  A  S  Y  V  E  S  G  L  A  T  P  D  K  R  E  N  V  N  G  S  A  S  T  E  S  P  I  L  N  N  I  Q  S  S  L  P  D  I  K  K  V  T  Q  D  L  L  R  Q  T  D  T  I  L  G  A  L  M  V  L  N  A  T  V  S  Q  F  N  K  G  A  G  L  F  G  K  G  D  A  K  E  D  S  S  T  G  L  E  N  D  I  L  L  Y  P  M  N  K  D  G  I  V  L  D  E  K  K  A  E  E  M  K  S  L  F  S  T  A  E  T  A  M  E  A  W  A  L  L  A  T  S  L  G  H  P  T  F  I  K  S  E  F  D  K  L  C  F  L  D  N  E  S  T  D  T  E  :  V  A  L  W  R  D  S  A  R  K  R  L  V  V  A  F  R  G  T  E  Q  :  T  K  W  K  D  L  V  T  D  L  M  L  V  P  A  G :   L  N  P  E  R  I  G  G  D  F  K  E  E  V  Q  :  V  H  S  G  F  L  S  A  Y  D  S  V  R  I  R  L  I  S  L  I  K  K  A  I  G  Y  Q :   D  D  D  L  D  T  P  N  K  W  H  V  Y  V  T  G  H  S  L  G  G  A  L  A  T  L  L  A  L  E  L  S  S  S  Q  L  A  K :   R  G  A  I  R  V  T  M   </first_frame>
            <second_frame>  K  A  R  *  N  G   : G  Q  K  S  Q  C  G  M  R  S  L  L  *  I  L  S  S  H  L  C  M  I  F  R :   L  Q  L  G  M  Q  I  W  *  L  H  I  N  A  W  E  M  Q  Q  L  I  W  N  I  S  V  M  :  E  I  L  I  N  C  W  L  I  W  M  E  W  A  V  V  G  R  *  R  *  R :   L  S  T  R  V  L  R  K  L  K  K  K  R  S  G  G  T  S  Q  S  L  Q  N  F  *  E  K  T  G  L  S  L  L  *  R  Q  F  L  V  P  R  L  F  K  L  D  N  L  Y  S  L  R  L  D  R  *  S  Y  L  M  M  H  I  M  I  Q  I  A  A  A  V  L  S  W  N  Q  M  Y  Y  R  S  R  S  N  H  P  T  W  M  T  Q  A  C  P  Q  H  Q  K  S  Q  I  I  *  K  T  P  K  L  M  V  K  *  S  L  I  V  M  E  V  T  *  P  M  N  M  I  P  L  V  L  K  F  *  R  A  F  N  Q  I  N  I  S  G  R  I  L  L  I  P  S  I  K  K  L  F  K  D  L  V  S  L  L  L  R  K  *  S  G  I  I  L  T  C  *  I  R  L  D  C  N  H  E  K  T  R  M  Q  V  M  L  N  L  V  L  Q  L  L  I  N  E  K  M  L  M  V  V  H  Q  L  N  H  L  F  L  I  T  F  S  H  H  F  Q  I  S  R  R  *  H  K  T  Y  C  V  K  L  I  P  F  W  E  H  *  W  F  *  M  P  Q  F  L  N  S  T  K  E  Q  A  F  S  E  R  V  M  L  K  K  I  L  Q  L  D  W  K  M  T  S  F  Y  I  P  *  I  K  M  E  *  C  W  M  R  R  K  L  R  R  *  S  L  F  S  Q  Q  R  R  L  P  W  K  L  G  H  C  *  L  L  H  W  D  I  R  H  S  S  N  L  N  L  T  N  Y  A  S  *  I  M  S  Q  L  T  Q  R :   *  R  S  G  V  I  Q  Q  G  N  G  *  L  L  L  S  G  E  Q  N  K :   Q  N  G  R  I  L  *  R  T  *  C  *  F  L  Q   : G  *  I  L  K  G  *  A  G  T  S  R  K  K  F  R :   F  T  V  V  S  *  V  H  M  I  Q  L  G  L  G  S  S  R  L  S  K  K  Q  L  A  T   : R  M  M  I  L  T  R  Q  T  N  G  M  F  T  *  L  A  I  V  L  V  V  H  W  L  L  F  S  L  L  N  Y  H  Q  V  N  *  L   : S  V  E  L  Y  V  *  P  C  </second_frame>
            <third_frame>   K  Q  G  E  M  G  :  D  K  R  A  N  V  E  *  G  V  C  F  K  Y  *  A  A  T  S  V  *  S  S   : D  C  S  L  G  C  K  S  G  D  S  T  *  T  H  G  K  C  S  S  *  F  G  T  S  L  *  W :   R  F  S  *  T  A  G  *  F  G  W  N  G  R  W  W  E  D  R  D  R   : D  *  V  Q  E  F  *  E  N  *  R  R  K  E  V  V  E  H  P  N  H  Y  R  I  S  K  K  K  R  V  *  V  C  F  E  D  N  S  W  F  R  D  C  S  S  S  T  I  C  T  V  C  V  W  T  D  E  A  T  *  *  C  I  *  *  F  K  *  Q  Q  Q  S  C  P  G  I  R  C  T  T  G  V  A  A  I  I  Q  L  G  *  L  K  H  A  P  S  I  R  N  L  K  *  F  E  R  H  Q  S  *  W  *  S  E  A  *  S  *  W  K  *  R  N  R  *  T  *  F  P  W  Y  *  N  F  R  E  L  S  I  R  *  T  F  L  E  E  F  C  *  Y  R  Q  S  K  S  C  S  K  T  W  S  P  C  S  *  E  N  K  V  G  *  S  *  L  V  K  *  D  W  I  A  I  T  K  R  R  G  C  K  L  C  *  I  W  S  C  N  S  *  *  T  R  K  C  *  W  *  C  I  N  *  I  T  Y  S  *  *  H  S  V  I  T  S  R  Y  Q  E  G  D  T  R  L  I  A  S  N  *  Y  H  F  G  S  I  D  G  S  K  C  H  S  F  S  I  Q  Q  R  S  R  P  F  R  K  G  *  C  *  R  R  F  F  N  W  T  G  K  *  H  P  F  I  S  H  E  *  R  W  N  S  V  G  *  E  E  S  *  G  D  E  V  S  F  L  N  S  G  D  C  H  G  S  L  G  T  A  S  Y  F  I  G  T  S  D  I  H  Q  I  *  I  *  Q  I  M  L  L  R  *  *  V  N  *  H  R   : G  S  A  L  A  *  F  S  K  E  T  V  S  C  C  F  Q  G  N  R  T   : N  K  M  E  G  S  C  D  G  L  D  A  S  S  C  R  :  V  E  S  *  K  D  R  R  G  L  Q  G  R  S  S   : G  S  Q  W  F  P  K  C  I  *  F  S  *  D  *  A  H  L  A  Y  Q  K  S  N  W  L  P  :  G  *  *  S  *  H  A  K  Q  M  A  C  L  R  D  W  P  *  S  W  W  C  I  G  Y  S  S  R  S  *  T  I  I  K  S  T  S  *  :  A  W  S  Y  T  C  D  H  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0037E15.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67497" stop="67478"/>
                    <exon start="66968" stop="66899"/>
                    <exon start="66254" stop="66173"/>
                    <exon start="65799" stop="65735"/>
                    <exon start="65514" stop="64492"/>
                    <exon start="64378" stop="64316"/>
                    <exon start="64236" stop="64190"/>
                    <exon start="63475" stop="63430"/>
                    <exon start="63321" stop="63242"/>
                    <exon start="62871" stop="62758"/>
                    <exon start="62008" stop="61984"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1635</number_coding_nucleotides>
                  <number_encoded_amino_acids>545</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSKVKWGTKEPMWNEEFALNIKQPPLYDLQIAAWDANLVTPHKRMGNAAVNLEHLCDGDSHKLLVDLDGMGGGGKIEIEIKYKSFEKIEEEKKWWNIPIITEFLRKNGFESALKTILGSETVQARQFVQFAFGQMKLLNDAYNDSNSSSSPVLESDVLPESQQSSNLDDSSMPPASEISNNLKDTKVDGEVKLNRDGSDVTDEHDSPGTKILESFQSDKHFWKNFADTVNQKVVQRLGLPAPEKIKWDNLDLLNKIGLQSRKDADASYVESGLATPDKRENVNGSASTESPILNNIQSSLPDIKKVTQDLLRQTDTILGALMVLNATVSQFNKGAGLFGKGDAKEDSSTGLENDILLYPMNKDGIVLDEKKAEEMKSLFSTAETAMEAWALLATSLGHPTFIKSEFDKLCFLDNESTDTEVALWRDSARKRLVVAFRGTEQTKWKDLVTDLMLVPAGLNPERIGGDFKEEVQVHSGFLSAYDSVRIRLISLIKKAIGYQDDDLDTPNKWHVYVTGHSLGGALATLLALELSSSQLAKRGAIRVTM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="71934" PGL_stop="71498"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71934" e_stop="71498"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71934" e_stop="71498" e_length="437"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71934" stop="71498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332253" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGTGATCCATATGGCTCAAGGTGCAGTTGATGGAGTGAAGAACACACTTGGAATTGGATCAGACAAAAAGTGAAAAAGAGAAAATGAAATTAATTAATTAATTAATTAATTAATTAACACATTTATCAATTTATATATCTCAATTTTAATTAATTTTTCATTTAATTCTATGATTTTCACATATGCTTTAGATTATTAAGCATAAGTGAAAAAACATAATATTATTAGTTTGTGAGATCTCTCACCAAAAGAATTACAAAATTTAATTCTTATAAAGTGAGATGATTTTCATAGGTTTGGTTTAATTATTGTTTAACAATTCCATGCACCTTATATTGGTGTTATAGTGAATTTTGTTTTATTGATCGAGATTTCTCTCGTTAGAAATTCTCATTATAAGTACGTAATAAGAAAGTTTTATTTTGTTTTTGTTA</gDNA_template>
            <first_frame> A  S  D  P  Y  G  S  R  C  S  *  W  S  E  E  H  T  W  N  W  I  R  Q  K  V  K  K  R  K  *  N  *  L  I  N  *  L  I  N  *  H  I  Y  Q  F  I  Y  L  N  F  N  *  F  F  I  *  F  Y  D  F  H  I  C  F  R  L  L  S  I  S  E  K  T  *  Y  Y  *  F  V  R  S  L  T  K  R  I  T  K  F  N  S  Y  K  V  R  *  F  S  *  V  W  F  N  Y  C  L  T  I  P  C  T  L  Y  W  C  Y  S  E  F  C  F  I  D  R  D  F  S  R  *  K  F  S  L  *  V  R  N  K  K  V  L  F  C  F  C   </first_frame>
            <second_frame>  Q  V  I  H  M  A  Q  G  A  V  D  G  V  K  N  T  L  G  I  G  S  D  K  K  *  K  R  E  N  E  I  N  *  L  I  N  *  L  I  N  T  F  I  N  L  Y  I  S  I  L  I  N  F  S  F  N  S  M  I  F  T  Y  A  L  D  Y  *  A  *  V  K  K  H  N  I  I  S  L  *  D  L  S  P  K  E  L  Q  N  L  I  L  I  K  *  D  D  F  H  R  F  G  L  I  I  V  *  Q  F  H  A  P  Y  I  G  V  I  V  N  F  V  L  L  I  E  I  S  L  V  R  N  S  H  Y  K  Y  V  I  R  K  F  Y  F  V  F  V  </second_frame>
            <third_frame>   K  *  S  I  W  L  K  V  Q  L  M  E  *  R  T  H  L  E  L  D  Q  T  K  S  E  K  E  K  M  K  L  I  N  *  L  I  N  *  L  T  H  L  S  I  Y  I  S  Q  F  *  L  I  F  H  L  I  L  *  F  S  H  M  L  *  I  I  K  H  K  *  K  N  I  I  L  L  V  C  E  I  S  H  Q  K  N  Y  K  I  *  F  L  *  S  E  M  I  F  I  G  L  V  *  L  L  F  N  N  S  M  H  L  I  L  V  L  *  *  I  L  F  Y  *  S  R  F  L  S  L  E  I  L  I  I  S  T  *  *  E  S  F  I  L  F  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLe0037E15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="77088" PGL_stop="74294"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77088" e_stop="76401"/>
            <exon e_start="75787" e_stop="75577"/>
            <exon e_start="75497" e_stop="75387"/>
            <exon e_start="75287" e_stop="74294"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="0.935"/>
          <exon-intron don_prob="0.967" acc_prob="0.799" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="77088" e_stop="76401" e_length="688"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="76400" i_stop="75788" i_length="613"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="75787" e_stop="75577" e_length="211"/>
          </exon>
          <intron i_serial="2" don_prob="0.967" acc_prob="0.799">
            <gDNA_intron_boundary i_start="75576" i_stop="75498" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="75497" e_stop="75387" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.962" acc_prob="0.999">
            <gDNA_intron_boundary i_start="75386" i_stop="75288" i_length="99"/>
          </intron>
          <exon e_serial="4" e_score="0.999">
            <gDNA_exon_boundary e_start="75287" e_stop="74294" e_length="994"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77088" stop="76458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76472" stop="76401"/>
              <exon start="75787" stop="75577"/>
              <exon start="75497" stop="75387"/>
              <exon start="75287" stop="74294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317132" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAAAAAAATTAAAAAAAATTCATCATTTTTAATCTGCAAAAAAAAAAATTAGTTATAATATTATTATTATTATGGCAATGAGTCTGCCACACCAGATCGGTGCCTTATCAGGAACATCGCTCACGGCGGAAACCGGTGGAGTTTCATGCGAAGTTCCGGCGAAGGGGAGTTCAGCTACATCAGCTATGTGGAGAACACCGATGACGAATTTAAAAGTATCGGTGCAAAAAACAGGAAATGAAATTGACAGGGTGTCGCCGTCGCCGTCGCCGCCGATGAGTCCGATGATGGGAGGAGGAATGCGACCGGATTTATCGGTAGCGTGTCAAGCGTTGATGGAGGCTCAGGTAGAGGAGGTAGTTGAGAGAGAATATAAGGTTAGGAATTCGTCGGAGAAAGAGAAAGGTGTTCCGGTGTTTGTTATGATGCCGTTGGATAGTGTGAAAACGGATCATACTGTGAATAGAAAAAAGGCGATGAATGCGAGTTTACAGGCGTTGAAAAGCGCCGGTGTGGAAGGGATTATGATGGATGTGTGGTGGGGATTGGTGGAGAGAGATGCACCGGGAGAGTATAATTGGGGCGGTTATGCTGAGCTTATGGAAATGGCGAAAAAACATGGACTCAAAGTTCAAGCTGTGATGTCTTTCCATCAATGCGGTGGTAACGTCGGTGATTCCTGCAC : GATCCCTCTTCCGAGGTGGGTTGTTGAGGAGATGGAGAAGGATCCAGATCTTGCATACACAGATCAGTGGGGAAGGAGGAATTTTGAATATGTATCGCTTGGTTGCGATACACTTCCAGTTCTTAAAGGAAGGACTCCTGTTCAATGCTATTCTGATTTCATGAGAGGGTTTAGAGATAGATTTGAGAATCTCTTAGGTGATACCATTGTG : GAAATTCAAGTCGGGATGGGTCCAGCTGGTGAGCTCCGTTATCCATCCTATCCCGAAAAAGATGGAATATGGAAGTTCCCTGGAATCGGTGCTTTTCAGTGTTATGATAAG : TACATGATCGGTAGCTTACAGGGTGCAGCGGAAGCATTTGGTAAGCCTGAATGGGGACACACCGGTCCAACCGATGCTGGTGAGTACAACAATTGGCCAGAAGATACAAACTTTTTCAAGAAGGAAGGTGGTGGATGGGATAGTCAATACGGGGAGTTCTTCCTCACTTGGTATTCTCAAATGCTTTTGAACCATGGCGAGAGGATACTGCAATCATCCAAGGCGATATTCGAGGACAAAGGTGTGAAGATTTCAGTTAAGATTGCAGGTATCCACTGGCACTATGGAACAAGGTCCCATGCCCCTGAGTTGACTGCTGGATACTACAACACTCGTAACCGAGATGGTTACCTTCCCATCGCCCAAATGCTTGCCCGCCACGGTGCAGTTTTCAACTTCACATGTGTTGAAATGCGTGACCACGAGCAGCCACAAGATGCACAATGTGCACCTGAGAAGTTGGTTAGGCAGGTGGCGTTAGCAACTCAGGAAGCTCAAGTTCCACTTGCTGGGGAGAATGCATTGCCACGATACGATGATTATGCTCATGAACAGATCCTTCAAGCGTCCTCGTTGAGCATCAACGATCAATCAGGTGATAGAGAGATGAGCGCGTTTACATACTTGAGGATGAATCCTGACTTATTCCATCCTGATAACTGGAGACGATTCGTTGCCTTTGTGAAGAAAATGAAAGAAGGAAAAGACGCTAACAAATGCCGCGAACAGGTAGAGAGGGAAGCAGAGCATTTCGTTCATATAACTCAGCCGTTAGTACAAGAAGCTGCAGTAGCCCTAATGCACTAAGCAAATCGTTGTCAAATAGTACTGTTTTAATTTGATCCTTTTAGCTAACATGAAGTTTTTCAACATGTTACCTGGATCTTATAGCTCGTTATCGTTGTTCTTAAATGTTTGTAAAACTGTTCATCGTGTAGTTTTTTTAAAGTCTAGACATTATGTCTTAATGAAATGATACATAATTCAGTAGTAA</gDNA_template>
            <first_frame> K  K  K  N  *  K  K  F  I  I  F  N  L  Q  K  K  K  L  V  I  I  L  L  L  L  W  Q  *  V  C  H  T  R  S  V  P  Y  Q  E  H  R  S  R  R  K  P  V  E  F  H  A  K  F  R  R  R  G  V  Q  L  H  Q  L  C  G  E  H  R  *  R  I  *  K  Y  R  C  K  K  Q  E  M  K  L  T  G  C  R  R  R  R  R  R  R  *  V  R  *  W  E  E  E  C  D  R  I  Y  R  *  R  V  K  R  *  W  R  L  R  *  R  R  *  L  R  E  N  I  R  L  G  I  R  R  R  K  R  K  V  F  R  C  L  L  *  C  R  W  I  V  *  K  R  I  I  L  *  I  E  K  R  R  *  M  R  V  Y  R  R  *  K  A  P  V  W  K  G  L  *  W  M  C  G  G  D  W  W  R  E  M  H  R  E  S  I  I  G  A  V  M  L  S  L  W  K  W  R  K  N  M  D  S  K  F  K  L  *  C  L  S  I  N  A  V  V  T  S  V  I  P  A   : R  S  L  F  R  G  G  L  L  R  R  W  R  R  I  Q  I  L  H  T  Q  I  S  G  E  G  G  I  L  N  M  Y  R  L  V  A  I  H  F  Q  F  L  K  E  G  L  L  F  N  A  I  L  I  S  *  E  G  L  E  I  D  L  R  I  S  *  V  I  P  L  W :   K  F  K  S  G  W  V  Q  L  V  S  S  V  I  H  P  I  P  K  K  M  E  Y  G  S  S  L  E  S  V  L  F  S  V  M  I  S :   T  *  S  V  A  Y  R  V  Q  R  K  H  L  V  S  L  N  G  D  T  P  V  Q  P  M  L  V  S  T  T  I  G  Q  K  I  Q  T  F  S  R  R  K  V  V  D  G  I  V  N  T  G  S  S  S  S  L  G  I  L  K  C  F  *  T  M  A  R  G  Y  C  N  H  P  R  R  Y  S  R  T  K  V  *  R  F  Q  L  R  L  Q  V  S  T  G  T  M  E  Q  G  P  M  P  L  S  *  L  L  D  T  T  T  L  V  T  E  M  V  T  F  P  S  P  K  C  L  P  A  T  V  Q  F  S  T  S  H  V  L  K  C  V  T  T  S  S  H  K  M  H  N  V  H  L  R  S  W  L  G  R  W  R  *  Q  L  R  K  L  K  F  H  L  L  G  R  M  H  C  H  D  T  M  I  M  L  M  N  R  S  F  K  R  P  R  *  A  S  T  I  N  Q  V  I  E  R  *  A  R  L  H  T  *  G  *  I  L  T  Y  S  I  L  I  T  G  D  D  S  L  P  L  *  R  K  *  K  K  E  K  T  L  T  N  A  A  N  R  *  R  G  K  Q  S  I  S  F  I  *  L  S  R  *  Y  K  K  L  Q  *  P  *  C  T  K  Q  I  V  V  K  *  Y  C  F  N  L  I  L  L  A  N  M  K  F  F  N  M  L  P  G  S  Y  S  S  L  S  L  F  L  N  V  C  K  T  V  H  R  V  V  F  L  K  S  R  H  Y  V  L  M  K  *  Y  I  I  Q  *  * </first_frame>
            <second_frame>  K  K  K  I  K  K  N  S  S  F  L  I  C  K  K  K  N  *  L  *  Y  Y  Y  Y  Y  G  N  E  S  A  T  P  D  R  C  L  I  R  N  I  A  H  G  G  N  R  W  S  F  M  R  S  S  G  E  G  E  F  S  Y  I  S  Y  V  E  N  T  D  D  E  F  K  S  I  G  A  K  N  R  K  *  N  *  Q  G  V  A  V  A  V  A  A  D  E  S  D  D  G  R  R  N  A  T  G  F  I  G  S  V  S  S  V  D  G  G  S  G  R  G  G  S  *  E  R  I  *  G  *  E  F  V  G  E  R  E  R  C  S  G  V  C  Y  D  A  V  G  *  C  E  N  G  S  Y  C  E  *  K  K  G  D  E  C  E  F  T  G  V  E  K  R  R  C  G  R  D  Y  D  G  C  V  V  G  I  G  G  E  R  C  T  G  R  V  *  L  G  R  L  C  *  A  Y  G  N  G  E  K  T  W  T  Q  S  S  S  C  D  V  F  P  S  M  R  W  *  R  R  *  F  L  H  :  D  P  S  S  E  V  G  C  *  G  D  G  E  G  S  R  S  C  I  H  R  S  V  G  K  E  E  F  *  I  C  I  A  W  L  R  Y  T  S  S  S  *  R  K  D  S  C  S  M  L  F  *  F  H  E  R  V  *  R  *  I  *  E  S  L  R  *  Y  H  C   : G  N  S  S  R  D  G  S  S  W  *  A  P  L  S  I  L  S  R  K  R  W  N  M  E  V  P  W  N  R  C  F  S  V  L  *  *   : V  H  D  R  *  L  T  G  C  S  G  S  I  W  *  A  *  M  G  T  H  R  S  N  R  C  W  *  V  Q  Q  L  A  R  R  Y  K  L  F  Q  E  G  R  W  W  M  G  *  S  I  R  G  V  L  P  H  L  V  F  S  N  A  F  E  P  W  R  E  D  T  A  I  I  Q  G  D  I  R  G  Q  R  C  E  D  F  S  *  D  C  R  Y  P  L  A  L  W  N  K  V  P  C  P  *  V  D  C  W  I  L  Q  H  S  *  P  R  W  L  P  S  H  R  P  N  A  C  P  P  R  C  S  F  Q  L  H  M  C  *  N  A  *  P  R  A  A  T  R  C  T  M  C  T  *  E  V  G  *  A  G  G  V  S  N  S  G  S  S  S  S  T  C  W  G  E  C  I  A  T  I  R  *  L  C  S  *  T  D  P  S  S  V  L  V  E  H  Q  R  S  I  R  *  *  R  D  E  R  V  Y  I  L  E  D  E  S  *  L  I  P  S  *  *  L  E  T  I  R  C  L  C  E  E  N  E  R  R  K  R  R  *  Q  M  P  R  T  G  R  E  G  S  R  A  F  R  S  Y  N  S  A  V  S  T  R  S  C  S  S  P  N  A  L  S  K  S  L  S  N  S  T  V  L  I  *  S  F  *  L  T  *  S  F  S  T  C  Y  L  D  L  I  A  R  Y  R  C  S  *  M  F  V  K  L  F  I  V  *  F  F  *  S  L  D  I  M  S  *  *  N  D  T  *  F  S  S   </second_frame>
            <third_frame>   K  K  K  L  K  K  I  H  H  F  *  S  A  K  K  K  I  S  Y  N  I  I  I  I  M  A  M  S  L  P  H  Q  I  G  A  L  S  G  T  S  L  T  A  E  T  G  G  V  S  C  E  V  P  A  K  G  S  S  A  T  S  A  M  W  R  T  P  M  T  N  L  K  V  S  V  Q  K  T  G  N  E  I  D  R  V  S  P  S  P  S  P  P  M  S  P  M  M  G  G  G  M  R  P  D  L  S  V  A  C  Q  A  L  M  E  A  Q  V  E  E  V  V  E  R  E  Y  K  V  R  N  S  S  E  K  E  K  G  V  P  V  F  V  M  M  P  L  D  S  V  K  T  D  H  T  V  N  R  K  K  A  M  N  A  S  L  Q  A  L  K  S  A  G  V  E  G  I  M  M  D  V  W  W  G  L  V  E  R  D  A  P  G  E  Y  N  W  G  G  Y  A  E  L  M  E  M  A  K  K  H  G  L  K  V  Q  A  V  M  S  F  H  Q  C  G  G  N  V  G  D  S  C  T :   I  P  L  P  R  W  V  V  E  E  M  E  K  D  P  D  L  A  Y  T  D  Q  W  G  R  R  N  F  E  Y  V  S  L  G  C  D  T  L  P  V  L  K  G  R  T  P  V  Q  C  Y  S  D  F  M  R  G  F  R  D  R  F  E  N  L  L  G  D  T  I  V  :  E  I  Q  V  G  M  G  P  A  G  E  L  R  Y  P  S  Y  P  E  K  D  G  I  W  K  F  P  G  I  G  A  F  Q  C  Y  D  K  :  Y  M  I  G  S  L  Q  G  A  A  E  A  F  G  K  P  E  W  G  H  T  G  P  T  D  A  G  E  Y  N  N  W  P  E  D  T  N  F  F  K  K  E  G  G  G  W  D  S  Q  Y  G  E  F  F  L  T  W  Y  S  Q  M  L  L  N  H  G  E  R  I  L  Q  S  S  K  A  I  F  E  D  K  G  V  K  I  S  V  K  I  A  G  I  H  W  H  Y  G  T  R  S  H  A  P  E  L  T  A  G  Y  Y  N  T  R  N  R  D  G  Y  L  P  I  A  Q  M  L  A  R  H  G  A  V  F  N  F  T  C  V  E  M  R  D  H  E  Q  P  Q  D  A  Q  C  A  P  E  K  L  V  R  Q  V  A  L  A  T  Q  E  A  Q  V  P  L  A  G  E  N  A  L  P  R  Y  D  D  Y  A  H  E  Q  I  L  Q  A  S  S  L  S  I  N  D  Q  S  G  D  R  E  M  S  A  F  T  Y  L  R  M  N  P  D  L  F  H  P  D  N  W  R  R  F  V  A  F  V  K  K  M  K  E  G  K  D  A  N  K  C  R  E  Q  V  E  R  E  A  E  H  F  V  H  I  T  Q  P  L  V  Q  E  A  A  V  A  L  M  H  *  A  N  R  C  Q  I  V  L  F  *  F  D  P  F  S  *  H  E  V  F  Q  H  V  T  W  I  L  *  L  V  I  V  V  L  K  C  L  *  N  C  S  S  C  S  F  F  K  V  *  T  L  C  L  N  E  M  I  H  N  S  V  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0037E15.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77053" stop="76401"/>
                    <exon start="75787" stop="75577"/>
                    <exon start="75497" stop="75387"/>
                    <exon start="75287" stop="74481"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1779</number_coding_nucleotides>
                  <number_encoded_amino_acids>593</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SAKKKISYNIIIIMAMSLPHQIGALSGTSLTAETGGVSCEVPAKGSSATSAMWRTPMTNLKVSVQKTGNEIDRVSPSPSPPMSPMMGGGMRPDLSVACQALMEAQVEEVVEREYKVRNSSEKEKGVPVFVMMPLDSVKTDHTVNRKKAMNASLQALKSAGVEGIMMDVWWGLVERDAPGEYNWGGYAELMEMAKKHGLKVQAVMSFHQCGGNVGDSCTIPLPRWVVEEMEKDPDLAYTDQWGRRNFEYVSLGCDTLPVLKGRTPVQCYSDFMRGFRDRFENLLGDTIVEIQVGMGPAGELRYPSYPEKDGIWKFPGIGAFQCYDKYMIGSLQGAAEAFGKPEWGHTGPTDAGEYNNWPEDTNFFKKEGGGWDSQYGEFFLTWYSQMLLNHGERILQSSKAIFEDKGVKISVKIAGIHWHYGTRSHAPELTAGYYNTRNRDGYLPIAQMLARHGAVFNFTCVEMRDHEQPQDAQCAPEKLVRQVALATQEAQVPLAGENALPRYDDYAHEQILQASSLSINDQSGDREMSAFTYLRMNPDLFHPDNWRRFVAFVKKMKEGKDANKCREQVEREAEHFVHITQPLVQEAAVALMH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 17 chains have been computed
$ 
$ memory statistics:
$ 19176 bytes spliced alignments in total
$ 9 spliced alignments have been stored
$ 2130 bytes was the average size of a spliced alignment
$ 14432 bytes predicted gene locations in total
$ 8 predicted gene locations have been stored
$ 1804 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 21 backtrace matrices have been allocated
$ 
$ date finished: 2009-02-02 17:32:09
-->
