<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-02-02 14:52:26"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLe0045A18-gKVbu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09SLe0045A18-gKVbu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0045A18-gKVbu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573064" ref_strand="+" ref_description="SGN-E573064 [32316]">
      <seq>tgacattttgtgggtgcagaaatttcaggtgtaaaaaatgtcgattccggcgactcaagcttccatagtgctccccgaaaatcgcatcatattaggttgtggggctgtgtcagtggacttcttggctgctgttgcttcttatcctaacccagatgataagattcgaagcacaagctttgaggttcaaggaggtggtaatactgggaatgctttgacttgtgcagctcgcctaggcttaactcctaggattatttcaaaggttgccgatgactctcaaggaaaagggttactggaggaactagaaactgatggtgtagattcgtcttttatggtggtgtccgaagggggaaattcaccatttacctacatcattgttgacaaccaaacgaagactcgcacttgcattcacacccctggctatccacccatgatacctactgatctttcccaatcaaatttattgtcggccttggatggtgttaaacttgtctatttcgatgggagattgcatgaaactgctgctattgtagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0045A18-gKVbu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0045A18.1" temp_strand="+" temp_description="C09SLe0045A18.1  AC234416.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0045A18 upload_account_name:spain (1 - 107156)">
        <position start="29980" stop="37019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30280" g_stop="30369" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.867"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30370" i_stop="30460" i_length="91">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.912" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30461" g_stop="30550" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="181" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30551" i_stop="30641" i_length="91">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30642" g_stop="30719" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="259" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30720" i_stop="31363" i_length="644">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31364" g_stop="31438" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="334" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31439" i_stop="31635" i_length="197">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31636" g_stop="31688" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="387" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31689" i_stop="36575" i_length="4887">
            <donor d_prob="0.980" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36576" g_stop="36719" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="531" r_length="144" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0045A18.1" gen_strand="+" ref_id="SGN-E573064" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0045A18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E573064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30280" e_stop="30369"/>
          <exon e_start="30461" e_stop="30550"/>
          <exon e_start="30642" e_stop="30719"/>
          <exon e_start="31364" e_stop="31438"/>
          <exon e_start="31636" e_stop="31688"/>
          <exon e_start="36576" e_stop="36719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACATTTTTGTGGGTGCAGAAATTTCA-GTGT-AAAAATGTCAATTCCGACGACTCAATCTTCCATATTGCTCCCTGAAGATCGAATCATAGTGGGTCTTTTTTTTGCTTCTGATGGAGGTTTATTGGTTAAGTTGGGGTGGTTATGTTATATCTGATGAATTTGTTATGTAATTTGAGCAGTTAGGTTGTGGGGCTGTGTCAGTGGACTTTTTGGCTGCTGTTGCTTCTTATCCTAACCCAGATGATAAGATTCGAAGCACAAGCTTTGAGGTTCTTAATTTTTCTTCACCCTGTTGTTTGAACTCAACTCTCTTTCTTCCATTCTTTGTCATAGTGAAAAGTGATCATTCTTGTAAAACAGGTTCAAGGAGGTGGAAATACTGGGAATGCTTTGACTTGTGCAGCTCGCCTAGGCTTAACTCCTAGGATTATTTCAAAGGTCTATCTGACTGATTCTAGATAGCTTTTTGGAATTTATTTCTGTATGCTTCCTGTACTTTTTGATTTTCTATATAAGAAATAAGCCCATAAGTTTTGTTTCCTGCGCAATACTCTAGATTCATAATATAATTCCCCCTAATACAATGTTTGATTCCGGTGTAAAACTCTCTATAATTGATAGTTGCATAACTCTTTTTGAACGAAATCGTTGGTTTGGAATTGGAGGGAGCTGGGTTCATGCCTCTATCCTCCTCCCATTTGAATACTAGCTTCTCATCAGTGGCAGAATTCGAAGTTATGACATTCACCAAGTCCACACATTCTATGCCATGTGCTTATCATTGAACCAAAGCATTGGGGGCTGTAATACCTGCATAATGCATGAGGAAACTTATGTCTTATTTTATGCAGGGTGGACATGTATTAGTAATTTCAAGATAAGCTTTGATATCACTATCTCTGCCCATTACTAGTTTGTCAACCAAACTAACCAGTGGTGATGCCTTTCGTTATGTTTGATTGCTAAAAACCAGTCTTCATCGGTCAATCTTTCCTAATTTGCTTTTCAATTCTTAACTTCTGTAACCTTTTGAAGTTCCTGACATCTTCACTTCATCTCCTAATTCCAAGTTGTTTTCTTAGGTTGCCGATGACTCTCAAGGAAAAGGGTTACTGGAGGAACTAGAAGCTGATGGTGTAAATTCGTCTTTTATGGTGGTGAGCCATCCAGACATGGAGTGCTTCTAGAGCTAGAAAAATGATAACTTGAATGCTTTTCTGTGTTTTATAGTTTGTTTATGTAAAAAAATTGGTAAAATTGTGATTCTGACTCTTTCCGTCCTCAGACTTCTTGTCATCTACTCGTCTCTAACAAGAAGTATCTGATTACTTGTACCATTTTTTTTTAATTCCAGGTGTCAGAAGGGGGAAATTCACCGTTTACCTACATCATTGTTGACAACCAAACGTGAGTGCCTTCTGCTCTGTTTACCACCATTTCAGACTGCCTTGGTGGTAATTAATTACTATTGTGATGTGATTTTCATGACATATGAATTTATATCTGTTAAGTTTATATCCAAGTGCTAGTTGTGAGTTACTATCTAATTTTTTCTTTTAATTTCTATGTCAAAAAAAATTGTATGTTATACTATTTGCTGGATGGCAGCTGCAAATTATAGCATTGTGCTATTAAATCCATAATCGAACTAAATCAAGTCTCTGACTACTTCTCAAAGTGGAGCAGCGCTGCTGCCCATCCGCCATTTTTTTTTGGGTATTAGGGGCTACAACATTGTTTTCTGTTCTTGCTTAACACTGAATCAGAAGTTGGTTTGTTGTCAGTCCCCAATTATTGCATCCTACCTACTACTAATGTGTAGTTAACTGAAACCTCGCAACGTACCTAGTGAAATCCCACTAAGTGAGGTCTGAGAAGGGTAGAGCATATGCAGACCTTATCTCTTCCTTGAGGAGGTAGAGAGGCTGTTCCTGAAAGGTCCTCAGTTCAAGTGCATCAAACCCAAGTAAAAGATGAAGAAAACAATGGAGAAAGCATAACCGTTAATAAGAAAAATGTGTAAAGTCTACAAGGAAGAAAGAAACAATTACAATACTAAAATAGTGTAGCAATCGAAACACAATACACAAGATGAGTCAAGAACTACAAGGATACAACTAGTACTCCGATGGACTCTAACAAGCGTAAACCTACGCACGACAAGACAACATTTCATCCCTACTAACCTTTCACCCTTATATGCAACCTCCACTCCTTTGTATGTAGAGTCATGTCCCTGATAATATGAAGTTGCACCATGTCCTATCTAATCACCTTTTTTCAATACTTCTTTGGTCTACCTCTAACCCTCCGGGTACCCCCTATTTTATTAACTAAAAAATGTTTTTAATTTGATAAAGAGAGTCACCAATTAATTTTTCAAGAAAAATTAAGAAAACCAATTTTTCAAAAAATTAAAACAGTAAATCAATTGAAAATATTAAGGGGGTTCTGGGTTTGATAACAAGTCTGGCATAACAAGTCGGGTGTGAATTCTGTGAAGGTCAAGAACAACCTTTATATGGTGAAGATCTTCTAGAGTGTTCTTTTCCATCAGATGCGTAGGAAATAGAAGAAATGTCTTTCCTCTTTTTCTTTAACAATCCCGAAGATCCAGACGAGGCAGTAACGCGTGCAATCTTCCCGATTCTTAGCCCGTCCTCGATAGCCTCACCAACCTTGACTATCTTGGCGAATTTTGCTCCAATGAGCAATATAATCTTGTCATAGTATTTTGATTCTTGAATACGCACAAACACTTCAATAATTTCTTTTTCTGACATAGGCGGCCTCTTTCCTCTCCATCTATACGTGTATTCGTGGTAACTTCCGGTTGACTTCTATCTAATATGTTCCAAAGAGTACCGTTCCAGAACGATCTCTACATTGTAGGCAAATCGTTCGACTAAACTTCAGATGTCGTTGGATTGAATTATGAAGATTTGCATCCATCAAAACTTGGATCTTTAAGAAGGGTTCAAAGTGTCGAAATTTGACACTTTTGGAGGAACTAGAAATCTGTTGGCTCATTTGAGGGCTTATTGTGACCAGCTCGTAGGAGTTGGAAGAAATGGAGTTTTGTTTATGCGGCTCTTTAGTCAAAGTTTTAACGGGGAAGCGTTAGAACGGTTCACTTACCAGGAGATGAAGCAATGGTCCAGTTGGAACACACTCGCCAAGGATTTTTTCAAACAATTTGCCTACAATGTAGAGATCGTTTTGGACCAATACTCTTTGGAAATGATCAGACAGAAGTCAATTGAAAATTACCGTGAATACGGGTATAGATGGAGGAAAGAGGCTGCTAGAATTCGACTGCCTATGTTGGAAAAAGAAATTGATTAAGTGTTTGTGCGTATTCAAGAACCAGAATACTATGACATGATTATGTTGCTCATTGGAGCAAAATTCGCAGAGATAATCAAGGTTGGTGAGACTATCGAGGACGGGCTAAGAATTTGAGAAGTTGCTCGCATGTTGCCTCGTCTGGATCTTCGGGATTGTTAAACAAGAAGAGGGAAGACATTTCTTCTATCCCCTAAGCATCTGAGGGAAAGAAACACTCTAAAAAATCTTCATCGTACAGAAATCGTTCTCGATCTTCGTAGAATTCATGCGCGACTTGTTATGCCCAAACTGGTTATCAAAGCCCCTTATTATTTTCAATTGATTTACTATTTTAATCTTTTGAAAATTAGTTTTAGTTTTTCCTTAAAAATTTAGTGGCGACTCTCTTTATCAAATTGAAAAGATTTTTTAGATAATAAAACAGAATAACGACTCTGCTGGGGAAGACGACGAGTGAATTTTCCGTGTATCTTGACGGTGGGAGACATGCTTCTTCATTTGAAGCTACTGATATGAAGACGCTGTATATTTTCTTCCGTGCTATTGGCATTTGAAGGATGTTATTACCTCGCATAGTGAATGTTGTTGTTAGCTGCTAGGTTAACGTTGTGTTTGCGCTGTCCTTTTTCGTGAACTCGTTGGATTTGTTCTTTCTCGTGTGAGGAAGGTGAGGCGCGTCTGGTTGAGGAAGAAGAAGGCAACACGCGTCGTTCTGCTCTGGGGTCAATCACGCTTGCTATTGGTGTTATTGTTGTTTGTTGTTAACGTTGAGGGAATTGGATTTGGGCCGGGTATTTTGATAGAAGATTGGGCTGGTTGAATTAGAAAATTGAGGCAACAAGTGGGATGATACGATATTGGGCTGTAATTTGAGTTCAAAGTTGGATAGAAAAGTGGTCAAAATGAAATAGATGTGGCTAGGTTTTGCAAAACACAAAATGGTTAAACTGAATGCAATTATAGATATATAGAATTCAAAACATAGCTGAATTTACTTAATTTAGTGAATCCGGCTAGAATTTAAACACGATGAATTAATATTAATTAACAAGCTTCTTGATCTTAACGGAAAAAATAAAATAATTAACTTAATTGTAAAATATAAACTCAAAATCGTAACTATAATTTGAACTAAACTAACCCAACAAATATTTAAGTAAAAGTAAAAATCTTTTTTAAGAAATTTTTTGAATATAAATAAAATATACTAATTATTTACATAATTATATGAAATATTTATTATTTAAAAAAATATAAAAACTGATCGAAATTACTTAATACTCCCTATGTCCCACTTTAAGCGACTTACTTTCCTTTTTAGCCATTCTAAAAAAGAATGACACATTTCTATATTAAGTAACAATTTAACTATAAAATGTCCATTTTACCCTTAATGAAATGATTCACATTAACACAAATTTCTATCATTCATTTTGGACCACAAATTTTAAGTCTTCTTTTCTTTCTTAAAATCCGTGCAGAGTCAAACTACCTAATATAAAATGGGACAGAGTGAGTAACTTTGAAAAAAATTTGAATTTATAAAGCTAATTATTCCAAATTGTCTGAAATTAAACGAGCTTAACAATTAATTTCTATTGGGGAGGATCAAATTGGGTGTCAACCCCCCCCCCCCCAACCATGAACCAACCTCTTGCACCTCCTCAGTTGGGCGTCAACGCTCCTCCTTTGCACTTGCCCTAGCTATCTCAGCCTTGCTTCCCTCATCTTGTCCCACTCCTACCTTCTCCTTTATAACTTCATTTCTAATGTTGTCGCTCATAGTATGCACACACATCCATTTTAACATCCTCATCTCCACAACATGCATCTTCTCCACCCCATACAACAAGGACGGTTTTATTGTAAAAGCTTACAGTTAAGTTGAGGTGGCACCTTCTTATCACACAAGACCCTAGATGTAAATCTCCATTTCATCCATGTTGCCGATGTGATGTGTGACATAATCGCCGATGTCTCCCTCTAACACTTTGTTTGGATCATTGTTACCCATTGTATCATATTGTATTATATTGTATTGTATGGTAGATACAATGTTTGGCTAGACTATATTGTTTGTTGTTGTTTAGTAACATTTTTATTGTTTGGTTTGATTGTATCGTATTGTATTGTAATTTATAAATTTACTAAAATATTCTTTAATTATTCTAGGGTAGGATGTTTGACAAGAATTAAATAACATAGGGTAACGGGTAAAATAGTATTATGAAATATTATGTAAGGATATAATTGGAGAAAAAAAAATTAAGTACCAATGAGAATACACCAAATCGGTTGTTTCATAAAACAAGTTTTCATTGTTATGTATCAATAAAATTTAACAATACAATACAATACTTTTTAAGTAATAATCAAATCACAACATTGTAGGTATGATAACAATATAATACAATACAATGGGTAACAATGATCCAAACAGAGAGTGTACCTGTGTTGAAATTCTGGTGTTTTAGTTCCCTTATTACAGTTTCTGGTCAGTGAATCGTCTCTATTGAGAAACTGGATCGAAATTACATCAAAAGCTTAATATGTTTTAAAGATGGAGAATGACATGTCTTGGATACTGCAACATCTTTGCAGCTTTTATACTAATCAAATGAATTGTGCCTAATCTCAAGCTTGTTGGGCTTGGTTATGATTTTTCCAAATAATTCTGCTCTATTTGGGTACATATGATTTCAATATTGGTTAACAATTTTAAGGCTAGTTAGAGTTTTTCTATAAGTAGATGTTCTCAAAATCTCACATTTTCTCTATACCACCATACAATTCTCTAACTGACCGAGAATTTCTAGCAAACAGCAGGACCTGACATTAAGGAATCTTAATTTCAACTAATTAAATTTTATTATGGAGGTTCTAGCAGTTTATTTTATGAAATGGGTTGCCTGTCTATTTAAGAACTCCTTGTGTTTGATGTTTCAGGAAGACTCGCACTTGCATTCACACCCCTGGCTATCCACCCATGATACCCTCTGATCTTTCCCAATCAAATTTATTGTCGGCCTTGGATGGTGCTAAACTTGTCCATTTCGATGGGAGATTGCATGAAACTGCTGCTATTGTAGC</genome_strand>
        <mrna_strand>TGACA-TTTTGTGGGTGCAGAAATTTCAGGTGTAAAAAATGTCGATTCCGGCGACTCAAGCTTCCATAGTGCTCCCCGAAAATCGCATCATA...........................................................................................TTAGGTTGTGGGGCTGTGTCAGTGGACTTCTTGGCTGCTGTTGCTTCTTATCCTAACCCAGATGATAAGATTCGAAGCACAAGCTTTGAG...........................................................................................GTTCAAGGAGGTGGTAATACTGGGAATGCTTTGACTTGTGCAGCTCGCCTAGGCTTAACTCCTAGGATTATTTCAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCGATGACTCTCAAGGAAAAGGGTTACTGGAGGAACTAGAAACTGATGGTGTAGATTCGTCTTTTATGGTG.....................................................................................................................................................................................................GTGTCCGAAGGGGGAAATTCACCATTTACCTACATCATTGTTGACAACCAAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGACTCGCACTTGCATTCACACCCCTGGCTATCCACCCATGATACCTACTGATCTTTCCCAATCAAATTTATTGTCGGCCTTGGATGGTGTTAAACTTGTCTATTTCGATGGGAGATTGCATGAAACTGCTGCTATTGTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0045A18-gKVbu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344960" ref_strand="+" ref_description="SGN-E344960 [cTOF-22-G8]">
      <seq>gtgctaaacttgtccacttcgatgggagattgcatgaaactgctgctattgtagcagaggaggcaaatagaaggggcatacccattttaattgacgctgagaagaaaagggaaggattggattatcttttaaactttgcaagttatattgtgtgctcaaccaaatttcctcaggaatggactgaggcttcttctattcccactgcccttgtttccatgctcttaaggttgccaaaagttaaatttgttattgtgacattgggtaaagatggctgcataatgctacaaagaactgaaatggacaatctcctccctgaagaaatggatgtcgaagacctgttcgaaaaactgaatctggagaaagacactaatgcaacattgcctgcatgcatatcctcgaatgtagcaaaactacatgcaaaagggatagggacaatcaccggtaagctacttgtggggacagctgaaaggatacctgaaacagaactaattgatacaactggagctggagatgcatttattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0045A18-gKVbu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0045A18.1" temp_strand="+" temp_description="C09SLe0045A18.1  AC234416.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0045A18 upload_account_name:spain (1 - 107156)">
        <position start="36365" stop="39688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36665" g_stop="36726" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36727" i_stop="36837" i_length="111">
            <donor d_prob="0.866" d_score="0.98"/>
            <acceptor a_prob="0.937" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36838" g_stop="36948" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="173" r_length="111" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36949" i_stop="38577" i_length="1629">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.120" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38578" g_stop="38704" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="300" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38705" i_stop="38845" i_length="141">
            <donor d_prob="0.930" d_score="0.98"/>
            <acceptor a_prob="0.966" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38846" g_stop="38943" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="398" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38944" i_stop="39264" i_length="321">
            <donor d_prob="0.555" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39265" g_stop="39388" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="522" r_length="124" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0045A18.1" gen_strand="+" ref_id="SGN-E344960" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0045A18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36665" e_stop="36726"/>
          <exon e_start="36838" e_stop="36948"/>
          <exon e_start="38578" e_stop="38704"/>
          <exon e_start="38846" e_stop="38943"/>
          <exon e_start="39265" e_stop="39388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCTAAACTTGTCCATTTCGATGGGAGATTGCATGAAACTGCTGCTATTGTAGCAGAGGAGGTATTTTCCTCTCACGCCTCTCTTCAAGCTTTCTGAGCTCACAAAAATACTCGTATATCGAATACATTTAAAATGGAAATGAACTGCATGCTTTTGGGATTTCCAGTGCAGGCAAATAGAAGGGGCATACCCATTTTAATTGACGCTGAGAGGAAAAGGGAAGGATTGGATTATCTTTTAAACTTTGCAAGTTATGTTGTGTGCTCAACCAAATTTCCTCAGGCAAGCTATTCACTCTATAAACTACATCTGTCTAGTTTCTTGGCTGCAAGAATATGCCTTTTGAATGAGTTGGACTGTCACTAATCTTCATAAAGAAGAATTTGTAATTTTGAGCAATGTCTTCTAGCATGGGCTGCCTGATTCAAATTGTGGTTGTATCTTCCATGAGATAGCACTGTTGGTTGTATTGACTGGTTTCATGGTTTTGCTGACAGCATGATCAACTGCGGATGCCTTCAAACTTTTCCTGATATGGAAAAGAATATATGTTTTACGGGTTCAGTTTTAGATTGGGATAATTTCCTATAATTCCTTGTTAATCTTTGTCATGGACCTTTAATGCAGGCCTGTAAATGATTTGACTTCCAGAATTAAATAAGATTGAGGATATCAAAAGAAAGGAGTCCCGCTAGTTCTTTTATTGTCTAGTGGAATGTCCTCAATGTTATGGTTGTTAAATGAAATCGGAAAACCAACAGAGAAAAAATAAAATAGAAAAAAAACGTTTTAGGTTGGTTTGATGTGGTTAATCAACCGAAATAGTCTGTTAGTATTTTTTAAAGGAGATACCGGCTCATATTTAATCACATATACCCCTACTTAATGTTATTATATCACTCAGTCAAGTTCTTAGTATAGCGGGCTATTCTTCATTATTCAGGCAATCCTATTCATAGTTGGACTATTTAATGCTAACCGTCAACCTATTGAAACCCCCCTTTATCCTAGCTTGAGATTGGTTAGCAAAGTTAAAGAAAGTACACAGGAACTTCTTTATCTAAAGAAAAGAAAGTACAAACACTTATAGAGGTTATTTAGAAGATCACTGCAGAAATGGTAGAGAAAAGCTCCCTGAGGAGGAAGGGAATTAAACATGATCTTTTATGAAGAGAAGAATTTGATGAATACGGAGGTGCCATGTGGGGAAGGGAGTAACTATTAGTCATCACATTTACTAAGCAGGGAGTCTGAAAAGGTCTTTGTTTTTTTTGGTGGTAATAATGGTGATAAGGCTGAGATGAGTTATCTGATGGGATTTTAGCTTGTGGTGGCTAGCGTTTACTCAACTCTTTCAATCAAAGGTCCTTCCAATTTTTGAAATGAGGAGAGAACTTGGACAAAAAGATCATGATGAGACCTCTTCAGAATCAAGCAGGCCTGGCAAGTCCTCAGGAGAAAGCACCTAAGCATGACTGTAGCTGGGTTTAGGTAATAGAAGTTTCTTGAGTTGAATTTGTAAGCAGAAACTGTGGATGCGTTTACTTCGGCTCTTCAGTTAGGGTATGGTCGCTGAAGTGAAGAACATTGCCTAGTTCATAAAGTAGCTTTAGAGGTAACAAAGTCCCATGAATTTGCTAGAGTCGTACAGTTCTTTTAGCTGGAGTATGAGGGCCCTTCAATAAATATGTAGGTGAAAAATTTAGACTACTACAACTGTAACTGTCTCATGGGAACTACCCACACATTTGGTTTAATGATACAGCAAGGGGCATACTGACTGAAAATTACATGTCAGAAAACATTTTACTAGTCACTTGCAAGAAGGTTTTTGAGTTATTTTACATATACATCAGGTCTGGTTTCTGTGATGCTCTCTGATAAGGCAACAGGGTTTTGATTGACTTTCAGGAATGGACTGAGGCTTCTTCTATTCCCACCGCCCTTGTTTCCATGCTCTTAAGGTTGCCAAAAGTTAAATTTGTTATTGTGACATTGGGTAAAGATGGCTGCATAATGCTACAAAGGACTGAAATGGGTATTTAGCAAAGTTTTTGTTTCTTCTCTTTTTTGATCAACTTTAATCACCTGTACACATCGATGAAGCCTTGTAAAAGATGGTACAGAAGACTATGCAACATTTTATATGCATCCTACAGAAACTTCAATACTTTTGCAGACAATCTCCTCCCTGAAGAAATGGATGTCGAAGTCCTGTTCAAAAAACTGAATCTGGAGAAAGACACTAATGCAACATTGCCTGCATGCATATCCTCGGTATTTCACTGTTCAGCAATTCTTTATCTTACCCCCAACCCTGCCACCAGCCTTCTGCATTTCTTGTTTGGATTTCTCAAGTCTTGTGTATATATATAAAAAATTGTCTATATACCCTATACCCCTTAAAACTGTACATTCTTTGGTCTTCCTACGGTATAATCCTTTTACTCAATGTTGAATGCTGTCAGGTGTTTGTTGTGCCTGTGACTGCAGGTTTATAATTTTGTTTATATGCTTCTTATGCAATTTAAGATGTCAGTTGCATGGAGATATGATTGTGGTATATTAACTTCAGATTTTACGTTTGTACGGCTGCAGAATGTAGCAAGACTACATGCAAAAGGGATAGGGACAATCACCGGTAAGCTACTTGTGGGGACAGCTGAAAGGATACCTGAAACAGAACTAATTGATACAACTGGAGCTGGAGATGCATTTATTG</genome_strand>
        <mrna_strand>GTGCTAAACTTGTCCACTTCGATGGGAGATTGCATGAAACTGCTGCTATTGTAGCAGAGGAG...............................................................................................................GCAAATAGAAGGGGCATACCCATTTTAATTGACGCTGAGAAGAAAAGGGAAGGATTGGATTATCTTTTAAACTTTGCAAGTTATATTGTGTGCTCAACCAAATTTCCTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGGACTGAGGCTTCTTCTATTCCCACTGCCCTTGTTTCCATGCTCTTAAGGTTGCCAAAAGTTAAATTTGTTATTGTGACATTGGGTAAAGATGGCTGCATAATGCTACAAAGAACTGAAATGG.............................................................................................................................................ACAATCTCCTCCCTGAAGAAATGGATGTCGAAGACCTGTTCGAAAAACTGAATCTGGAGAAAGACACTAATGCAACATTGCCTGCATGCATATCCTCG.................................................................................................................................................................................................................................................................................................................................AATGTAGCAAAACTACATGCAAAAGGGATAGGGACAATCACCGGTAAGCTACTTGTGGGGACAGCTGAAAGGATACCTGAAACAGAACTAATTGATACAACTGGAGCTGGAGATGCATTTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0045A18-gKVbu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315270" ref_strand="-" ref_description="SGN-E315270 [cTOA-24-I4]">
      <seq>tgctgctgatcttccttatcggacgattgaagtgaatgttttaacgagaaaaggtcaaacacaagcagaaatnttctgggtcgagctcggatttctgggtcaagcattgctaaagaaggggaagaaatagcgcagctttatacactggataaaaggagtcttttttctcatgtacgtggtgagttgagtttgaagatttatttatcaacaacagagcaagtgaaacaagttataactgataatggtaatgctggtggtggtggtggaggggtggtgtcttctggtgcaccaaatgctaagaagaacaagaaattgcagcagaagcagcagcaacagacaaatggaacaaacatggtggttcaaatgggtcaagaaaataaggtaaactttcaaaaccagaaccattcaaagccagtggagtcagttccaggtgatattaagcctgttgttattactagtgttcctggacctattattccggctgtgactggtggtggtggggttggtttgtacacttctgggcaaggtgagttttctctgaaagaaacaagtccacatcttggtggtaaggacaagactaactcaacatatgacttggtggaacaaatgcagtatttgtatgttagagttgttaaggctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0045A18-gKVbu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0045A18.1" temp_strand="-" temp_description="C09SLe0045A18.1  AC234416.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0045A18 upload_account_name:spain (1 - 107156)">
        <position start="45027" stop="43693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44727" g_stop="44346" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44345" i_stop="44253" i_length="93">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44252" g_stop="43993" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="641" r_length="260" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0045A18.1" gen_strand="-" ref_id="SGN-E315270" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0045A18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315270" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="44727" e_stop="44346"/>
          <exon e_start="44252" e_stop="43993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGCTGATCTTCCTTATCGGACGATTGAAGTGAATGTTTTTAACGAGAAAAGGTCAAACACAAGCAGAAATTTTCTGGGTCGAGCTCGGGTTTCTGGGTCAAGCATTGCTAAAGAAGGGGAAGAAATAGCGCAGCTTTATACACTTGATAAAAGGAGTCTTTTTTCTCATGTACGCGGTGAGTTGAGTTTGAAGATTTATTTATCAACAACAGAGCAAGTGAAACAAGTTATAACTGATAATGGTAATGCTGGTGGTGGTGGTGGAGGGGTGGTGTCTTCTGGTGCACCAAATGCTAAGAAAAACAAGAAATTGCAGCAGAAGCAGCAGCAACAGACAAATGGAACAAACATGGTGGTTCAAATGGGTCAAGAAAATAAGGTTATCTTGAATTTTTGTGTTCATTTAAAGATAAAAAGAACTGATTTTTTTTAAACTTTTTATATCATGTTTTAACACCACTTTTATGAACAGGTAAACTTTCAAAACCAGAACCATTCAAAGCCAGTGGAGTCAGTTCCAGGTGATATTAAGCCTGTTGTTATTACTAGTGTTCCTGGACCTATTATTCCGGCTGTGACTGGTGGTGGTGGGGTTGGTCTGTACACTTCTGGGCAAGGTGAGTTTTCTCTGAAAGAAACAAGTCCACATCTTGGTGGTAAGGACAAGACTAACTCAACATATGACTTGGTGGAACAAATGCAGTATTTGTATGTTAGAGTTGTTAAGGCTAA</genome_strand>
        <mrna_strand>TGCTGCTGATCTTCCTTATCGGACGATTGAAGTGAATG-TTTTAACGAGAAAAGGTCAAACACAAGCAGAAATNTTCTGGGTCGAGCTCGGATTTCTGGGTCAAGCATTGCTAAAGAAGGGGAAGAAATAGCGCAGCTTTATACACTGGATAAAAGGAGTCTTTTTTCTCATGTACGTGGTGAGTTGAGTTTGAAGATTTATTTATCAACAACAGAGCAAGTGAAACAAGTTATAACTGATAATGGTAATGCTGGTGGTGGTGGTGGAGGGGTGGTGTCTTCTGGTGCACCAAATGCTAAGAAGAACAAGAAATTGCAGCAGAAGCAGCAGCAACAGACAAATGGAACAAACATGGTGGTTCAAATGGGTCAAGAAAATAAG.............................................................................................GTAAACTTTCAAAACCAGAACCATTCAAAGCCAGTGGAGTCAGTTCCAGGTGATATTAAGCCTGTTGTTATTACTAGTGTTCCTGGACCTATTATTCCGGCTGTGACTGGTGGTGGTGGGGTTGGTTTGTACACTTCTGGGCAAGGTGAGTTTTCTCTGAAAGAAACAAGTCCACATCTTGGTGGTAAGGACAAGACTAACTCAACATATGACTTGGTGGAACAAATGCAGTATTTGTATGTTAGAGTTGTTAAGGCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0045A18-gKVbu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238124" ref_strand="-" ref_description="SGN-E238124 [cLED-22-B10]">
      <seq>aagaattaaacttaagagtaccatccataagcaatgtaaatcttaaaacgtaatttctcaaactcttttttttcattaactaactttaatcaatcatcaaattttattaccttacttttgtattctgattttgaaaagaaaataggttgaagtttgttgttaggcagttacgctgacggttttctctttgaaacaagaagaagaagaagaatgaatgacttcgtagtttgctaagagaaataatgccataagcagtgcaaaaggttttaaagcataggaaaaattaaaaataacaaagaaagaaaaattatgctacctaaactaattaagaataagaaaagtcaaaacaagtaagaataggaaaagtcaaaacaagtacaaaattgggagttaaataagcccataattagaaaaagaaaaaataaaaataaaaaaaaaagtcgtaaaattcgttggaattaattttttttttaaaaagaagagttaaataagcccttaattagaaaaaggattttttttaaaaaaaacaggtgtaaaattcgcttgaaatttttttttagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0045A18-gKVbu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0045A18.1" temp_strand="-" temp_description="C09SLe0045A18.1  AC234416.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0045A18 upload_account_name:spain (1 - 107156)">
        <position start="48065" stop="46487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47766" g_stop="47427" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47426" i_stop="47020" i_length="407">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47019" g_stop="46786" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="562" r_length="232" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0045A18.1" gen_strand="-" ref_id="SGN-E238124" ref_strand="-">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.021" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0045A18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238124" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="47766" e_stop="47427"/>
          <exon e_start="47019" e_stop="46786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAATTAAGACTTAAGAGTACCATCCATAAGCAATGTAAATTTTAAAACGTAATTTCTCAAACTCTTTTTTTTTTTCATTAACTAACTTTAATCAATCATCAAATTTTATTACCTTACTTTTCTATTCTGATTTTGAAAAGAAAATATGTTGAAGTTTGTTGTTGGGCAGTTACGCTGATGGTTTTCTCTTTGAAACAAGAAGAAGAAGAAGAATGAATGACTTCATAGTTTGCTAAGAGAAATAATCCCATAAAAGTGGGCAGTGCAAAAGGTTTTAAAGCATAAGAAAAGTTAAAAATAAAAAAGAAAGAAAAATTATGCTACCTAAACTAATTAAGAGCCTGTTTGGCTCAGCTTAAAAGCTGGTCAAACTGACTTAAAAGCTAGTTTTTGACTTATTTAACTTTTTGGCAATACTCAAAATAGCTTATTTTAAGTTAAAAAAAACTTATTTTAAGCCAAAAGTTAAAAGCTGGGATAGGGGTGCTTTTTTTTTTTTAGCTTATAAGCTGTTTTAAGTTGACCACGTTTTTATGTTTTTTCCCTTAATATTTTTATACAATCTCCAAATTACCCATATAATCCTAACATCTCTTTCTTCTATTTTTACCTTTTCACGTTTGGCATAACAATTTCAGCACTTTTATCTAAACGCATAACTGCTTATTTTAAAAATAAGTTTCAGCACTTTCAAAAGTACTTTTTTAAAGCTGCTTTTATTAAGCTCATCCAAACGGGCCCTAAGAATAGGAAAAGTCAAAACAAGCAAGAATATGAAAAGTCAAAACTAGTACAAAATTGGCAGTTAAATAAACCCTTAATTACAAAAAGGAAAAATAAAAA-ATTAAAAAAAGTTGTAAAATTTGTTGGAATTAATTTTTTTTTTTAAAAAGAAGAGTTAAATAAGCCCTTAATTAGAAAAAAGGATTTTTTAATAAAAAAAACAGGTGTAAAATTCGCTGGAAAATTTTTTAAAAAA</genome_strand>
        <mrna_strand>AAGAATTAA-ACTTAAGAGTACCATCCATAAGCAATGTAAATCTTAAAACGTAATTTCTCAAACTC---TTTTTTTTCATTAACTAACTTTAATCAATCATCAAATTTTATTACCTTACTTTTGTATTCTGATTTTGAAAAGAAAATAGGTTGAAGTTTGTTGTTAGGCAGTTACGCTGACGGTTTTCTCTTTGAAACAAGAAGAAGAAGAAGAATGAATGACTTCGTAGTTTGCTAAGAGAAATAATGCCAT--AA----GCAGTGCAAAAGGTTTTAAAGCATAGGAAAAATTAAAAATAACAAAGAAAGAAAAATTATGCTACCTAAACTAATTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................AATAAGAAAAGTCAAAACAAGTAAGAATAGGAAAAGTCAAAACAAGTACAAAATTGGGAGTTAAATAAGCCCATAATTAGAAAAAGAAAAAATAAAAATAAAAAAAAAAGTCGTAAAATTCGTTGGAATTAA-TTTTTTTTTTAAAAAGAAGAGTTAAATAAGCCCTTAATTAG-AAAAAGGATTTTTT-TTAAAAAAAACAGGTGTAAAATTCGCTTGAAATTTTTTTTTAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0045A18-gKVbu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351864" ref_strand="+" ref_description="SGN-E351864 [cTOS-8-K24]">
      <seq>acttcgaaggtgtttctccctgtatcagacttcctagtactccaaactttgttattccgggagattttcactaatttttaagcgatctcagcataagggcattctccataagatccaccttctataatgtccaacacttctttgttactatcatcctgtccctgatagaactatttcttccgtgactcatcatctatacagtgatttggaacacttctcaagaatgaggtgatctatcccaagaactactaactgactctactggtagtgccacaaaattatttactctgtctttgtggtttagtttcttcgagattggatagtagagtgccaagaaaacatctcttaattggttccaagtgaagattgagttgcatggaagctcagtgaaccatataggagcctctcccttcagtgagagaggaaacactgtgagccctattacatctagatccatgtcaggcctccccacactacatttacacactgcccttaccttagctatttgggcatgtggatcctcaggcggtagccctgaaaacaaacctctagcagtgagcatttgcatcaggctactagttaccataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0045A18-gKVbu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0045A18.1" temp_strand="-" temp_description="C09SLe0045A18.1  AC234416.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0045A18 upload_account_name:spain (1 - 107156)">
        <position start="53518" stop="52328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53218" g_stop="52629" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0045A18.1" gen_strand="-" ref_id="SGN-E351864" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0045A18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53218" e_stop="52629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGCGAAGGTGTTTCTCCCTGTATCATACTTCCTAGTACTCCAAGCTTTGTTATTCCGGGAGATTTTCTCTAATTTTTCAGCGATCTCAGCATAAGGGCATTCTCCATAAGATCCACCTGCTATAGTGTCCAACACCGCTTTGTTGTTATCATCCTGTCCCCGATAGAAGTATTCCTTCAGTGACTCATCATCTATACGGTGATTTGGAACACTTCTCAAGAATGAGGTGAATCTATCCCAAGAACTACTAACTGACTCTCCTGGTAGTGCCACAAAGTTGTTCACTCTTTCTTTGTGGTTTAGTTTCTTGGAGACCGGATAGTAGCGTGCTAAAAAGACATCTCTTAATTGGTTCCAAGTGAAGATTGAGTTGTATGGGAGCTCAGTGAACCACATAGCAGCCTCTCCCGTCAGTGAGAGAGGAAACACTCTGAGCCCTATTACATCTAGATCCAAAACAGGCCTTCCCACACAACTTTTACACACTGCCCTTACCTTAGCTATATGGGCATGTGGATCCTCAGAAGGTAGCCCTGAAAACAAACCTCTGGCAGTGAGCATTTGCATCAGGCTACTAGTTACCACAAA</genome_strand>
        <mrna_strand>ACTTCGAAGGTGTTTCTCCCTGTATCAGACTTCCTAGTACTCCAAACTTTGTTATTCCGGGAGATTTTCACTAATTTTTAAGCGATCTCAGCATAAGGGCATTCTCCATAAGATCCACCTTCTATAATGTCCAACACTTCTTTGTTACTATCATCCTGTCCCTGATAGAACTATTTCTTCCGTGACTCATCATCTATACAGTGATTTGGAACACTTCTCAAGAATGAGGTG-ATCTATCCCAAGAACTACTAACTGACTCTACTGGTAGTGCCACAAAATTATTTACTCTGTCTTTGTGGTTTAGTTTCTTCGAGATTGGATAGTAGAGTGCCAAGAAAACATCTCTTAATTGGTTCCAAGTGAAGATTGAGTTGCATGGAAGCTCAGTGAACCATATAGGAGCCTCTCCCTTCAGTGAGAGAGGAAACACTGTGAGCCCTATTACATCTAGATCCATGTCAGGCCTCCCCACACTACATTTACACACTGCCCTTACCTTAGCTATTTGGGCATGTGGATCCTCAGGCGGTAGCCCTGAAAACAAACCTCTAGCAGTGAGCATTTGCATCAGGCTACTAGTTACCATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0045A18-gKVbu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578039" ref_strand="+" ref_description="SGN-E578039 [LE08DB10]">
      <seq>cgagggtctttgttctaatacacttcaactcttggaatttgggtactgggatcacttctctgaacttcacgacgaacctgcaggacggaccgtcagatccacgacggaccgtcacaagcttcgtaatcccacacttagtcagacttccctatcttccttcagcagctgcactacgcttccacctacggaccgtcacaagcacgacggaccgtcataagctccgtaggtggtttcttctgcatttcttcgctcaaaatctccgcattcagctttggacagatttcctgcaaaacaaagagtaacttatataaaaattagcacaaaaaggcttttggacacactaagcttaaggaaaaagtattaataataccgtgaaaccacggtatatcaacaccctcaacttaaattagttgtttgtcctcaagcgacgcactatgactcactacacaatctttgtacaatagtatccatgttttatcctttgcaatcatttggctatcaatcccgattaatctcatcaaatctatgcatgctatcactattaggtttgaattttgtgggatcagaatatgacacagacttaccatgcactaacacctatcctcttcaatttctcaccgaggtgctaacaattctagtattgcaactagtgtcctcactataagacaaaatcctcctttttcacacagtgattttagtttgagtataaggattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0045A18-gKVbu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0045A18.1" temp_strand="-" temp_description="C09SLe0045A18.1  AC234416.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0045A18 upload_account_name:spain (1 - 107156)">
        <position start="60545" stop="59230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60245" g_stop="59530" g_length="716"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0045A18.1" gen_strand="-" ref_id="SGN-E578039" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0045A18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60245" e_stop="59530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGGTCTTCGTTCTAAAACACTTCAACTCTTGGAATCTGGGTACTGGGATCACTTCTTTGAACTTCACGATGAACTTGCAGGACGGGCTGTCATAGCCATGACGGACCGTCACAAGCTTCGTAATCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGTTGCACTACGCTGCCACCTACGGACCGTCACAAGCACGACGGACCGTCATATGCTCCGTAGGTGGTCTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCAGCTTTTGACAGATTTCCTGCAAAACAAAGAGAAACTTATATAAAAATTAGCGCAAAAATTCTTTTGGACACACTAAACTTAAGGAAAAAGTATTAATAATTCCATGAAACCACGGTATATCAACACCCTCAACTTAAATTCGTTGTTTGTCCTCAAGCGACGCACTATGACTCACTACACAATCTTTGTACAATAGTATCCATGTTTTATCCTTTGCAATCATTTGGCTATCAATCCCGATTAATCCCATCAAATCTATGCATGCTATCACTATTAGGCTTGAATTTTGTGGGATCAGAACATGACACAGACTCACCACGCACTAACACCTATCCTCTTCAATTTCTCACCGGGGTGCTAACAATTCTGGTATTGCAACTAGTGTCCTCACTTTAAAACAAAATCCTCTTTTTTCACACAATGATTTCAGTTTGAGTATAAGGATTAC</genome_strand>
        <mrna_strand>CGAGGGTCTTTGTTCTAATACACTTCAACTCTTGGAATTTGGGTACTGGGATCACTTCTCTGAACTTCACGACGAACCTGCAGGACGGACCGTCAGATCCACGACGGACCGTCACAAGCTTCGTAATCCCACACTTAGTCAGACTTCCCTATCTTCCTTCAGCAGCTGCACTACGCTTCCACCTACGGACCGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTTTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGCAAAACAAAGAGTAACTTATATAAAAATTAGCACAAAAAGGCTTTTGGACACACTAAGCTTAAGGAAAAAGTATTAATAATACCGTGAAACCACGGTATATCAACACCCTCAACTTAAATTAGTTGTTTGTCCTCAAGCGACGCACTATGACTCACTACACAATCTTTGTACAATAGTATCCATGTTTTATCCTTTGCAATCATTTGGCTATCAATCCCGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGTTTGAATTTTGTGGGATCAGAATATGACACAGACTTACCATGCACTAACACCTATCCTCTTCAATTTCTCACCGAGGTGCTAACAATTCTAGTATTGCAACTAGTGTCCTCACTATAAGACAAAATCCTCCTTTTTCACACAGTGATTTTAGTTTGAGTATAAGGATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0045A18-gKVbu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286708" ref_strand="+" ref_description="SGN-E286708 [cLES-14-D9]">
      <seq>tcgcgaggtccgtcatggtcacgacggaccgtcatggactccgtcgtcccatacttatgcaatttcttttgttgctcttcttcattaccctcaacggcaagtatggcggaccgtcataggcacaacggtccgtcgagggccttcgttccaaaacactttaactcttggaatatgggtactgggattacttctctgaacttcatgacgaacctgtaggacggaccgtcatagacacgatggaccgtcacaagcttcgtaaccccatacttggtcagacttccccatcttccttcagcagctgcactacgctgacacctacggaccgtcacaagcacgacggaccgtcataagctccgtaggtggtctcttctgcatttcttcgctcaaaatctccgcattcagctttggacagatttcctgcaaaataaaaagaaactaatatagaaattagcacaaaaaggattttagacacactaaacttaaggaaaaagtattaataataccatgaaaccacggtatatcacttggccacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0045A18-gKVbu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0045A18.1" temp_strand="-" temp_description="C09SLe0045A18.1  AC234416.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0045A18 upload_account_name:spain (1 - 107156)">
        <position start="60678" stop="59556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60378" g_stop="59864" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0045A18.1" gen_strand="-" ref_id="SGN-E286708" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0045A18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60378" e_stop="59864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCGACGGACCGTCGTGGTTACAATGGACCGTCATGGACTCCGTCGTCCCATACTTGTGCAATTTCTTCTGCTGCTC-TCTTCATTCCTCTCGACTGCAGGTATGACGGACCTTCATAAGCACAACGGTCCGTCGAGGGTCTTCGTTCTAAAACACTTCAACTCTTGGAATCTGGGTACTGGGATCACTTCTTTGAACTTCACGATGAACTTGCAGGACGGGCTGTCATAGCCATGACGGACCGTCACAAGCTTCGTAATCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGTTGCACTACGCTGCCACCTACGGACCGTCACAAGCACGACGGACCGTCATATGCTCCGTAGGTGGTCTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCAGCTTTTGACAGATTTCCTGCAAAACAAAGAGAAACTTATATAAAAATTAGCGCAAAAATTCTTTTGGACACACTAAACTTAAGGAAAAAGTATTAATAATTCCATGAAACCACG</genome_strand>
        <mrna_strand>TCGCGA-GGTCCGTCATGGTCACGACGGACCGTCATGGACTCCGTCGTCCCATACTTATGCAATTTCTTTTGTTGCTCTTCTTCATTACCCTCAACGGCAAGTATGGCGGACCGTCATAGGCACAACGGTCCGTCGAGGGCCTTCGTTCCAAAACACTTTAACTCTTGGAATATGGGTACTGGGATTACTTCTCTGAACTTCATGACGAACCTGTAGGACGGACCGTCATAGACACGATGGACCGTCACAAGCTTCGTAACCCCATACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTGCACTACGCTGACACCTACGGACCGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGCAAAATAAAAAGAAACTAATATAGAAATTAGCACAAAAAGGATTTTAGACACACTAAACTTAAGGAAAAAGTATTAATAATACCATGAAACCACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0045A18-gKVbu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E399718" ref_strand="+" ref_description="SGN-E399718 [cSTC-2-M17]">
      <seq>ctcatttgcatggaaaagacaggataaaagggccacttgattgggatgtgaggttaaaaattgctcttggtgctgcaaggggacttgcttaccttcatgaagattctaatcctcgtgttattcatcgtgatttcaaagccaacaatgttttgttagaagaggacttcacccctaaggtttcacattttgggttagcatgggaagcaaccgaaggaagtgaccacgtatctactcgagtcatgggaacttttgggtatgttgctcctgaatatgcaatgacgggacacctccttgttaaaagcgatgtgtatagttatggggttgtgttattggagctcctctctagaagaaaacctgtggatatgtctcaacctcctggacaagaaaacctggtaacttgggcacgtcctcttctaaccactcgagaaggtttggagcaacttgtggatccttctttggctggaacctatgactttgatgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0045A18-gKVbu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0045A18.1" temp_strand="-" temp_description="C09SLe0045A18.1  AC234416.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0045A18 upload_account_name:spain (1 - 107156)">
        <position start="69794" stop="67938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69487" g_stop="69247" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="253" r_length="241" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69246" i_stop="68468" i_length="779">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68467" g_stop="68238" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="483" r_length="230" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0045A18.1" gen_strand="-" ref_id="SGN-E399718" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0045A18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E399718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69487" e_stop="69247"/>
          <exon e_start="68467" e_stop="68238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGACAGGATAAAAGGGCCACTTGATTGGGACGTGAGGTTAAAAATTGCTCTTGGTGCTGCAAGGGGACTTGCTTACCTTCATGAAGATTCTAATCCTCGTGTTATTCATCGTGATTTCAAAGCCAGCAATGTTTTGTTAGAAGAGGACTTCACCCCTAAGGTTTCAGATTTTGGGTTAGCAAGGGAAGCAACCGAAGGAAGTGACCACGTATCCACTCGAGTCATGGGAACTTTTGGGTATATAATCTCTTAATCATGACTAATCTTGAAGTGGTCTTGATTCACTCAAATAAGAGTATAACAAATGTGTGGTATGCTAGTGAAGCATACTCATTAGAGAAAAAAAAATGAAGAATAAATTAATACTAAAGCATCACCTTTTTCAGCTCTATTGGTTCCATTGGATCATCTATTGGAAGTTTTTATGAGAACTAACAAAAACTTGTGAAATCCTTCATCAAGTATGCTTGTCTGTGTTCTAGAGGTGTAATTCGTGAAATTGATTTTGGAATTTGTGCTGACATAAAGATATTGATGTTACAGAAAACGATTAGATAGTGTGAGAGTACTTCCTGTATATTTTTTGAATTGAGTTCCAACAACAAAAGGGGAAAAGATAAACTGTGAGGGTTAGCGCTTTATTTGCAAGGATACTTATCCACTGCCAATATTGTCCTGAAATTCTGTCACCCCAGTAAGAGGATGATTATCTCAGCCCAAGGCTGTTGTTCTCTAATGCATCAGGCTGTGATCAATACCCCTAGATATTGCGAAATCATGTTGTTACACTTTTTAAAACTAGTTTCTTAGGCCTCGTGTTTTATTTGCCTCTGATTGTCCTAACAGATATATTCTGTTTTTTTTGCTTTGATTCCTTGTTTTTAGTTCTTTTGTTCATAAACCGACTTTATACTCTACCTTATTTGCAACTCCAATCTGTGCTGCAAAGAGTAAATTTACACCTGCATTTGTGCTATGAAGCGGTTGCTAACATTCCCTATTTTCTGGGTTTGCAGGTACGTTGCTCCTGAATATGCAATGACGGGACACCTCCTTGTTAAAAGTGATGTGTATAGTTATGGGGTTGTGTTACTGGAGCTTCTCTCTGGAAGAAAACCTGTGGATATGTCTCAACCTCCTGGACAAGAAAACCTGGTAACTTGGGCACGGCCTCTTCTGACCACTAGAGAAGGTTTGGAGCAACTTGTGGATCCTTCTTTGGCTGGAACCTATGACTTTGATGATA</genome_strand>
        <mrna_strand>GAAAAGACAGGATAAAAGGGCCACTTGATTGGGATGTGAGGTTAAAAATTGCTCTTGGTGCTGCAAGGGGACTTGCTTACCTTCATGAAGATTCTAATCCTCGTGTTATTCATCGTGATTTCAAAGCCAACAATGTTTTGTTAGAAGAGGACTTCACCCCTAAGGTTTCACATTTTGGGTTAGCATGGGAAGCAACCGAAGGAAGTGACCACGTATCTACTCGAGTCATGGGAACTTTTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTTGCTCCTGAATATGCAATGACGGGACACCTCCTTGTTAAAAGCGATGTGTATAGTTATGGGGTTGTGTTATTGGAGCTCCTCTCTAGAAGAAAACCTGTGGATATGTCTCAACCTCCTGGACAAGAAAACCTGGTAACTTGGGCACGTCCTCTTCTAACCACTCGAGAAGGTTTGGAGCAACTTGTGGATCCTTCTTTGGCTGGAACCTATGACTTTGATGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0045A18-gKVbu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365327" ref_strand="+" ref_description="SGN-E365327 [cLPT-2-B19]">
      <seq>ttgctgctgctccaattgccagtcgagtggttggacatcaccgtcatcgtcataatcggccgagagcccgtgtttccccatctcctgcagtgggctcaggttgtggcgaggtctgtgcagagccatttgcttctgttccttttgttacaccttgcacttgtgtgtttccaatgaaagtcagacttctcttagacaagtcgctttattctatatttcctgtggttagagatctgggtattgaggttgcaaaaggaacctatctacgtccaagtcaagttgttgtagttggagctagtgctgataatcaaaatcaagaaagaacaattgttgatattaacttggttcccctggaggataagtttgataacaccacagctatgctgatctatgaaagattctggaaaaagaagatgcctctcaatagaacgatgtttggggattatgatgtgatgcatattatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0045A18-gKVbu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0045A18.1" temp_strand="-" temp_description="C09SLe0045A18.1  AC234416.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0045A18 upload_account_name:spain (1 - 107156)">
        <position start="77263" stop="70955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76963" g_stop="76865" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76864" i_stop="71619" i_length="5246">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71618" g_stop="71255" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="463" r_length="364" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0045A18.1" gen_strand="-" ref_id="SGN-E365327" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0045A18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76963" e_stop="76865"/>
          <exon e_start="71618" e_stop="71255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTGCTGCTCCAATTGCCAGTCGAGTGGTTGGACATCACCGTCATCGTCATAATCGGCCGAGAGCCCGTGTTTCCCCATCTCCTGCAGTGGGCTCAGGTATTATTGCTGTTGTAATTGATAATATCCTGTCAATCCTATGCTACTCTCTTTCATTACTTCAACTTTAGGACAAAATATGGACCAAAGGCAAAAATGAAATGCAAATAGGATGAAGGCCAAGGTTGCCGTGTTTGAGGGATATATATATATATATTATATATATGGGTTATATATAACATGTGTATTGCATGTATATTGGTTATAATTGTCAGCTTATATGTTACAATCGTGATCTGTTCAACTTGTTTCATAGATGTCTAGAATTGCCAACGAACCCCCTCATCCTCATTAGCACTGCAGCTACATCCTTTCTCTACCCTCAAGGGGTTGTTTGGTTTTCTGATAAGTTGCACATGATTTTAAGGTAGGGAGTTTGTAATATGGTGATATATAGACTAAAGTACTGTACTTATTATTGGATGCTCAGTTCCGGTCGGAAATATAATGTGGATGGTCTAAAATGTATGTGTGAATTGGATAAAGATTTGTTTCCTAAAACACTCTTGGCCAATAATAAAACCTTATCCAATCTATTACCAGTTTACTACCTTGTGTAATTGAGATAAAACTATTTTTGTGATAAGCAATATTTAGTGTAATGCAATATAATTTCAATTAAAATATATACTACTAGTTTTCAGTTACCTCAAATACACAACAATTTTTAAGAAGAAAGATAAAATGGGGTATACTAAAATATTTAGATAAATAAAGAATAATGAAATCTTGATTTTAGATGTGAAATCTATTATAGGAAAAAATTCTTACATTCTGAAATCAACACTACAAACAGTTTGGAAACAAAAGAGAGATAATAAGTGAGAGATGGTTAACTAAACAAGAAATAGTTTGTCGTGTATTTTGTCATTTACGTAAAAAGCGTGATACTTAAGACTACCTATGGTATTCTAAGGGTTTGTTTGGTAGGGTGGTAATTAGGCAACACATATTATTTAATCCCTTTTGGTAGTGCTTTCAACCTATATAACACCCTACTCAGTACTATTCTTATACATAGTAAATCATGCTATTAAAAATACCAGTACTATTCCTATTCTTATACACCCTATTCATTTAATACAACAAACCCAACAGTTGATAAAAGATAATGCAAGTATAACTAATCCTAGCAATATACTATTCTTAAAAACCCTACCAAACGACTCCTAAGTCCTAACTATATAGCAAATATGTTTAATGTTATTCTGGGTTGAATTCTGAGAAAAAATGCAGACGTTATGCATGCATTATCTCTGCACGAAACAAATATGATAGCCAAGCGCTGTATTGATAATGATCTGTTTTATGCGGAGGGTATTATCTCCTTTACCTTAAAGTTTCAAACCAGATATGCTCTTGATGTACTACTCTTGTTCCTAAATGTATTACTCTCATTACTGAATTGATCTCCTGTGATTCTCTTTCCTGTGATCCTAAATTATTATCCACTTCATTAAAATGGGAAGTTAATGCAATTTGCATAGGACGGGGGACCTATATGAGATTTACTTCTACTCCTAAAAGTAAAATGTTATATGATCAATATATTAGTCCATTTAACACTGAGCACCTCATACTTTTTACTGCTGATAATGTGCTACACAGAACTAGGGCATTCTACATATAAGATAGAGAATCTAGATATCATAAATTTAATAGTAGGCTGCAAAGGGATCTTCTGCTTTGTGATTTTCCTAATACAAAAACTTTTAGGGCCCTGATCTATGTAGACTATGGAAGTATTGTCCCATCCACTAAGATGCTGTACATAATATCCAAACTATTGTAAATTCTCACAAACTTAGACTCTTTTAAGATTTCTTTTCGGGTATTTCTTGGGCTCTAATAAGATGAAGTTAGATTTAGATGGATGGTATATGACCATCAATATATAATTCTGCATATTTAAATTTATAATCTTCGAGTTGGGCAGCTAATCACCAGACAAACTGAACAAAAGATAAGGAGAGACATGGATGCCTGATTCAGAGGGGTACTGGGGATGAATGAGAACCTTGTGGCTTGGAGACAAACATTATTTTCTTAACATCTTATTAGATAAGAGCATGCTAAGATACAAAAGATTGTGAGAGACCTACAGGCTGCCCCTGAGATTGGAATTGGATGAGCTGCACCTCTATTGTTTCCTAAGTTGCTCGGACTTTTCACTTTCACTGCCACACCCGTGTTGACACGACGTGGATGTGGGATCCATACCCGTTCTGGTCAACCGTTTTGGGTACTTTAACCAAATTCGAGGGAGAAATTCTGGACAGATTCAATGATTTTTGTCATCAAACAAAAACTAAGATGATATCAAAGAGAATGGAAAATCTTTTATATATGAATATGCATTGTCACTCCCTTCCCTTTATCTTCTTCTAGGATTCTCCTCTTGACCAATATTTTCTCCTCAAGTTTTCCACATAATATCTCATAATTTAGGTTTTAGAACTCTATTTTTAGATATTTGAATTATTTTTAGCCAAATCCCCATGCGCATATTCATACATGGATCCGTTTCCCCAAATATGAAAATTTAGATCATAAAGGATCTAACATCTAGATCTGCACCCGTATAGGACACATGCACCTGAGTTCAAGCAACTTAGCAGCATCTGTTCAAAGTGATCCTTTTCGTCAGGCCGATATTGGCCAGATTAGGCGTTGCAGCCTCAATCACGTGGTGTACTTGATCGGCTTCTATTCCAATTGTTGTGGTTGTTCCACAATATTAAGCTTTGCCACAACTCTGGTCCTCTAAGTTGCTCGGACTTGGATGCAGGTGTTCGATAAGGGTGTGCATCTATAGGTTGGATCCTTCATGGTCTAATTTTTAAGATCCGGGATATGAATCCATATATGGATATGAGTGTGGGGATTCGCCTAATAATAATTAAAATATCTAAAAATAGAGTAAAGATCTAAATTATGAGATATCATAGGTAGAACATGAGGAGAATCCTGGAAAGTGATTAAAGAATAAGGAGTGACATAGAAATTTCTATATAAAGGTATTCTATTTTCTTCAATTTTACCTTAGCTTTGTATTGATTACAGAAATCACTAAAACTGTCCAGATTTCCCCATCAATTTTGGTCAAAGTACCCAAAATCAGTTGACCAAATCGGACATGAATCCCATGTCATGTCGACACAGGCGCAACACCAAAAGTGAAGAGTGATAACTTAGCTGGCTCTTGCCTCAACCCTCCTCCTTAACCTATATAGTGTTCTCTCTGCTTTGGGATTGTAAGGAGGAAGCTTCTGCTTCTTTCCATACACAGAGTGACACCTGAGGAAACAAAAACAATGAACAAAAAGTAAAACCTGAACAATTAATAAATAACAACTTAAACTATATAGATAGCTATTTCTAAGTCCTCGACAATGGTGCCAAAAACTTGTTATGGTCCATCTACACACAAGTGTACGTAGTTAATCAAGTAATATAATGATAAGAGTAGAATGTCGTACTCACATGTACTAATTTTTAGCTAGTACTGTTCAAACTGAAATGAATTCTTTCTTCAAGTGTTTTTCCAAGAGTTCTTGAATATTATTTAAGTACTCGCTACAATTACTTGATAAGCAATTAAATTGAAAACTTTTGCACAACAACGTGAGCAAGTAAGTGTTGAACAATAAATGTGAATAATCTAGGGTTACGGTATCTACGTCAATCCCGCTGAGTTTTCCAGTTAAACTAATTACTTGATGATATATAGGTTATTGGTTGACAAGGTTTATATTACTGCAATTTTTTGTCAAACAATTAAAAGCCTATTCAAGTTATCTAACTCTATGTCTAGCAGAATAGAATTAACAAGAATTGCCTTAATATTTCCTGTATATCAACCATTTAACATCAACATTCATGAACAATCCAGAACCCCATAATTAAGAACTTAGCCACTCATAATCATGGAAAGAATCACGAGTATTTGAAAAGCATAAAATATAAAGATGAGATGGAAGAAAAAGAAACTAGGTGAAACCTATAATCAGCTGGAGTTTTTGCTCTTCTATGGTCAAACATTCCTCAAAAATGAGTTTCTAACCTATTTTGAACGTGTACAAACATACTCCGGCCTAAATCACCCTTGAAATAAAACACTGCAAAAAATCAGCTCCAACTTGGCCTACGTGCACCCAGCGTCGTGCATGCTCAACTTTCCCTGTGCTCCACCAACTCGTTTAGGTTCATCATGCAAGGCTGGAGCGTTGTGTTGCGCACACTGTTTTGCATGCATGTTCTCAATTTTCTTCCATCCTTCACATGTACGTCCTTGATCCCCGACTCAATCTCGTTTGAGTTTCTTGCACTTCTACTCGGACTTTGAAGCTCCAAATCATTTGTTCTAGCTAATTAGCTTGAAAACTATTCCTACACAGAAAATACACGTAATAAGCACGGCAGAATCAAAGTTTACTCAAATAACGGCAAAGGATCTTAAATGTGAGATAATCAATGCCGAACATCATTGGTCAAGTAAGAAAAGGACTTCACAAATGTGAAATATAGGAAAAAATCTCCCTCTGGTGTCCCAACGAGTAGCATGTAGGTCTTGTAAAATTTAAACAAAAATCTAGCACATAATTGGTTTTGTGTTAGGACCTGTCTGATTTCTGTTTCTAAGGTTCCTTTTTTAGATGACATCCGGACAATTAGAGTTGAGGCAAACTAAGTAGTGGAAGTGCTTTCAGTGTGAGGAGAATATTTCACATTTAACTGTTCTCATATTACAGAGAGGATGTGTTACTGTATGTTGTGTTTTCTTTTCTTTATTATGCTTCTGTGCCTTCATTATATTTCTGAGTTTGGTGTCAGAATTAATTAGGTCAAAACAGATGAAAGAGGGGTGGCACTAGTTGCATAATAAGGATGATAGAGACAAATAAAAATTAATTAGCAATCACATGATTGAGTTTGCTAAATAGCTAATCGGAAAAAGATTTAGATTCCATTTGAATTTATGTATTGGTTGTGAAAGGAATGCTCTATTTATGTTTGTTGCTACATATCAACTGTCAACAAATTCCTTAATAGCATAATAGAGCCCAAAGGATAGAACAGCTTTATTTGTTTAACTTCCCCCCTACCTTCCGTTTTTGTATACAATATTAATTGAAATCATCATTGACATGCTTAACATGCTAATCTAAATCCTCTATATCATTTGTCCTAGAGTTATGTTCCTCATACATGATATCTGATGTTGAATATTCTTAACAAATTTGCAGGTTGTGGCGAGGTCTGTGCAGAGCCATTTGCTTCTGTTCCTTTTGTTACACCTTGCACGTGTGTGTTTCCAATGAAAGTTAGACTTCTCTTAGACAAGTCGCTTTATTCTATATTTCCTGTGGTTAGAGATCTGGGTATTGAGGTTGCAAAAGGAACCTATCTACGTCCAAGTCAAGTTGTTGTAGTTGGAGCTAGTGCTGATAATCAAAATCAAGAAAGAACAATTGTTGATATTAACTTGGTTCCCCTGGAGGATAAGTTTGATAACACCACAGCTATGCTGATCTATGAAAGATTCTGGAAAAAGAAGATGCCTCTCAATAGAACGATGTTTGGGGATTATGATGTGATGCATATTATGTA</genome_strand>
        <mrna_strand>TTGCTGCTGCTCCAATTGCCAGTCGAGTGGTTGGACATCACCGTCATCGTCATAATCGGCCGAGAGCCCGTGTTTCCCCATCTCCTGCAGTGGGCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGGCGAGGTCTGTGCAGAGCCATTTGCTTCTGTTCCTTTTGTTACACCTTGCACTTGTGTGTTTCCAATGAAAGTCAGACTTCTCTTAGACAAGTCGCTTTATTCTATATTTCCTGTGGTTAGAGATCTGGGTATTGAGGTTGCAAAAGGAACCTATCTACGTCCAAGTCAAGTTGTTGTAGTTGGAGCTAGTGCTGATAATCAAAATCAAGAAAGAACAATTGTTGATATTAACTTGGTTCCCCTGGAGGATAAGTTTGATAACACCACAGCTATGCTGATCTATGAAAGATTCTGGAAAAAGAAGATGCCTCTCAATAGAACGATGTTTGGGGATTATGATGTGATGCATATTATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0045A18-gKVbu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736149" ref_strand="+" ref_description="SGN-E736149 [LC04CB09]">
      <seq>gtttgtaaaaaacttggttctttgtgcagcagtggtggtacttgtttgaggcattgccggattttatggatctgtgaagtaaggaatttgattgattgattggggagctgcattttgttgttacagatgcattattcggatgttactgaaggaagcttatttgatggagggtttttttgtttttagtgttgagtagaaccctatagaataatgctttgatactactgatgatggtgtttgggaattgcccatttgagagagtaacatgccaactttgatgcttctctttcttctttctttactcactctgcttactactactactctagggataacattgccacacgtttacctgtctcctactctaccgccaaacaagccttactttgcaagcaaactttttttatgagatgcaagattattgtcaactctgtgtgctcatttgctccaatatcgccaccgcatagacgccattttaaaccacatatgattccctctagggcgcctgctccttcccctgcatctcgaggccttgctgctgctccaattgccactcgagtggtatggacatcaccgtcgtcgacataatcggccgagagcccgtgtttccccatctcctgcactgggctcgagttgtggcgatgtctgtgcagagccatttgcttctgttccttttgttacaccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0045A18-gKVbu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0045A18.1" temp_strand="-" temp_description="C09SLe0045A18.1  AC234416.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0045A18 upload_account_name:spain (1 - 107156)">
        <position start="78610" stop="71264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78310" g_stop="77984" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77983" i_stop="77383" i_length="601">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77382" g_stop="77299" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="413" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77298" i_stop="77157" i_length="142">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77156" g_stop="77043" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="529" r_length="116" r_score="0.912"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77042" i_stop="76967" i_length="76">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.703" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76966" g_stop="76865" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="632" r_length="103" r_score="0.922"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76864" i_stop="71619" i_length="5246">
            <donor d_prob="0.986" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71618" g_stop="71564" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="687" r_length="55" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0045A18.1" gen_strand="-" ref_id="SGN-E736149" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0045A18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78310" e_stop="77984"/>
          <exon e_start="77382" e_stop="77299"/>
          <exon e_start="77156" e_stop="77043"/>
          <exon e_start="76966" e_stop="76865"/>
          <exon e_start="71618" e_stop="71564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGTAAAAAACTTGGTTCTTTGTGCAGCAGTGGTGGTACTTGTTTGAGGCATTGCCGGATTTTATGGATCTGTGAAGTAGGGAATTTGATTGATTGATTGGGGAGCTGCATTTTGTTGTTAGAGATGCAGTATTCGGATGTTAGTGAAGGAAGTTTAGTTGATGGAGGGTTTTTTTGTTTTTAGT-TTGAGTAGAACCCTAGAGAAGAATGCTTTGATACTACTGAGGATGGTGTTTGGGAATTGCCCATTTGAGAGAG-AAGATGCCAACTTTGATGCTTCTCTTTCTTCTTTCTTTACTCACTCTGCTTACTACTACTACTCTAGGTAATTTTTATTTTTTGTACCCCTTTTTTTTTTTTTTGCTCGAGTAGAACCCTAGATATGCTGGAATTAGGCACATTTTGATATGCCTGCTTCTTTTGCTTCCTGTTTCTGTTTCATTTGTTGATGGGTTGTTATGAAATTTCTGGTGGGATTTTACCAGGCATTTCTGTGGAGTTTAGAACTGTTGGGTGTTTGAATTTTTGTTTTAAAATGCACACTCCAATTAGAGGAAAGGTTCTAGGGTGACTACTTTGCAATGCAAGAATCAACAAATGCGGCTTCCTGTTTGAAAAGATATAACTATAGAGAGCTTATATATTTGACAGCAACTTGTATTGGTAATGCAGCATAATTGATGTATAAAGAAAGCCCTTTCCTTTTTCGAAGGAAGGAGGTAGACAGACGTTAGTTAATGGATGCTTGCAGCCTGTAAATTAGAAGTATTTCCTTTTCAGTTATCCTGTTTTCCAAGACTTTAAGATATTTTTCCCTTTCAGATAAGACCTTTCAATCTGTGAAATTTAGTGCATGCACGATTGGCTGTTCTTTCTGTATGTGAAGTTTGGTTACTTATTTGCTTCTAAAGCTTCTAACTTTTCAGGGATAACATTGCCACACATTTACCTGTCTCCTACTCTACCGCCAAACAAGCCTTACTTTGCAAGCAAACTTTTTTTAGGAGATGGTAAGATTGATTCTTCAAATTCTGCTTCTTATGGCTCTGTGTTGTTATTTGTTGACTGATTAGAGAAGCCACTTGTTATGCCAATTTAGTGATAAATATGAATCTGGAACATACTTAATTATCTCTTACATTGTTTTTGCAGCAAGATTAGTGTCAACTC-ATGT-CTCATTTGCTCCAATATCAGCACCGCATAGACACCATTTTAAACCACATATGATTCCCTCTAGGGCGCCTGCTCCTTCCCCTGCATCTCAAGGTATTGAGAGTTGCTCTTCCCTCACCATCTTTTAGAACTTCTTGAGCTTTTACTGATGGGGAAATCTAATCTTTAGGCCTTGCTGCTGCTCCAATTGCCAGTCGAGTGGT-TGGACATCACCGTCATCGTCATAATCGGCCGAGAGCCCGTGTTTCCCCATCTCCTGCAGTGGGCTCAGGTATTATTGCTGTTGTAATTGATAATATCCTGTCAATCCTATGCTACTCTCTTTCATTACTTCAACTTTAGGACAAAATATGGACCAAAGGCAAAAATGAAATGCAAATAGGATGAAGGCCAAGGTTGCCGTGTTTGAGGGATATATATATATATATTATATATATGGGTTATATATAACATGTGTATTGCATGTATATTGGTTATAATTGTCAGCTTATATGTTACAATCGTGATCTGTTCAACTTGTTTCATAGATGTCTAGAATTGCCAACGAACCCCCTCATCCTCATTAGCACTGCAGCTACATCCTTTCTCTACCCTCAAGGGGTTGTTTGGTTTTCTGATAAGTTGCACATGATTTTAAGGTAGGGAGTTTGTAATATGGTGATATATAGACTAAAGTACTGTACTTATTATTGGATGCTCAGTTCCGGTCGGAAATATAATGTGGATGGTCTAAAATGTATGTGTGAATTGGATAAAGATTTGTTTCCTAAAACACTCTTGGCCAATAATAAAACCTTATCCAATCTATTACCAGTTTACTACCTTGTGTAATTGAGATAAAACTATTTTTGTGATAAGCAATATTTAGTGTAATGCAATATAATTTCAATTAAAATATATACTACTAGTTTTCAGTTACCTCAAATACACAACAATTTTTAAGAAGAAAGATAAAATGGGGTATACTAAAATATTTAGATAAATAAAGAATAATGAAATCTTGATTTTAGATGTGAAATCTATTATAGGAAAAAATTCTTACATTCTGAAATCAACACTACAAACAGTTTGGAAACAAAAGAGAGATAATAAGTGAGAGATGGTTAACTAAACAAGAAATAGTTTGTCGTGTATTTTGTCATTTACGTAAAAAGCGTGATACTTAAGACTACCTATGGTATTCTAAGGGTTTGTTTGGTAGGGTGGTAATTAGGCAACACATATTATTTAATCCCTTTTGGTAGTGCTTTCAACCTATATAACACCCTACTCAGTACTATTCTTATACATAGTAAATCATGCTATTAAAAATACCAGTACTATTCCTATTCTTATACACCCTATTCATTTAATACAACAAACCCAACAGTTGATAAAAGATAATGCAAGTATAACTAATCCTAGCAATATACTATTCTTAAAAACCCTACCAAACGACTCCTAAGTCCTAACTATATAGCAAATATGTTTAATGTTATTCTGGGTTGAATTCTGAGAAAAAATGCAGACGTTATGCATGCATTATCTCTGCACGAAACAAATATGATAGCCAAGCGCTGTATTGATAATGATCTGTTTTATGCGGAGGGTATTATCTCCTTTACCTTAAAGTTTCAAACCAGATATGCTCTTGATGTACTACTCTTGTTCCTAAATGTATTACTCTCATTACTGAATTGATCTCCTGTGATTCTCTTTCCTGTGATCCTAAATTATTATCCACTTCATTAAAATGGGAAGTTAATGCAATTTGCATAGGACGGGGGACCTATATGAGATTTACTTCTACTCCTAAAAGTAAAATGTTATATGATCAATATATTAGTCCATTTAACACTGAGCACCTCATACTTTTTACTGCTGATAATGTGCTACACAGAACTAGGGCATTCTACATATAAGATAGAGAATCTAGATATCATAAATTTAATAGTAGGCTGCAAAGGGATCTTCTGCTTTGTGATTTTCCTAATACAAAAACTTTTAGGGCCCTGATCTATGTAGACTATGGAAGTATTGTCCCATCCACTAAGATGCTGTACATAATATCCAAACTATTGTAAATTCTCACAAACTTAGACTCTTTTAAGATTTCTTTTCGGGTATTTCTTGGGCTCTAATAAGATGAAGTTAGATTTAGATGGATGGTATATGACCATCAATATATAATTCTGCATATTTAAATTTATAATCTTCGAGTTGGGCAGCTAATCACCAGACAAACTGAACAAAAGATAAGGAGAGACATGGATGCCTGATTCAGAGGGGTACTGGGGATGAATGAGAACCTTGTGGCTTGGAGACAAACATTATTTTCTTAACATCTTATTAGATAAGAGCATGCTAAGATACAAAAGATTGTGAGAGACCTACAGGCTGCCCCTGAGATTGGAATTGGATGAGCTGCACCTCTATTGTTTCCTAAGTTGCTCGGACTTTTCACTTTCACTGCCACACCCGTGTTGACACGACGTGGATGTGGGATCCATACCCGTTCTGGTCAACCGTTTTGGGTACTTTAACCAAATTCGAGGGAGAAATTCTGGACAGATTCAATGATTTTTGTCATCAAACAAAAACTAAGATGATATCAAAGAGAATGGAAAATCTTTTATATATGAATATGCATTGTCACTCCCTTCCCTTTATCTTCTTCTAGGATTCTCCTCTTGACCAATATTTTCTCCTCAAGTTTTCCACATAATATCTCATAATTTAGGTTTTAGAACTCTATTTTTAGATATTTGAATTATTTTTAGCCAAATCCCCATGCGCATATTCATACATGGATCCGTTTCCCCAAATATGAAAATTTAGATCATAAAGGATCTAACATCTAGATCTGCACCCGTATAGGACACATGCACCTGAGTTCAAGCAACTTAGCAGCATCTGTTCAAAGTGATCCTTTTCGTCAGGCCGATATTGGCCAGATTAGGCGTTGCAGCCTCAATCACGTGGTGTACTTGATCGGCTTCTATTCCAATTGTTGTGGTTGTTCCACAATATTAAGCTTTGCCACAACTCTGGTCCTCTAAGTTGCTCGGACTTGGATGCAGGTGTTCGATAAGGGTGTGCATCTATAGGTTGGATCCTTCATGGTCTAATTTTTAAGATCCGGGATATGAATCCATATATGGATATGAGTGTGGGGATTCGCCTAATAATAATTAAAATATCTAAAAATAGAGTAAAGATCTAAATTATGAGATATCATAGGTAGAACATGAGGAGAATCCTGGAAAGTGATTAAAGAATAAGGAGTGACATAGAAATTTCTATATAAAGGTATTCTATTTTCTTCAATTTTACCTTAGCTTTGTATTGATTACAGAAATCACTAAAACTGTCCAGATTTCCCCATCAATTTTGGTCAAAGTACCCAAAATCAGTTGACCAAATCGGACATGAATCCCATGTCATGTCGACACAGGCGCAACACCAAAAGTGAAGAGTGATAACTTAGCTGGCTCTTGCCTCAACCCTCCTCCTTAACCTATATAGTGTTCTCTCTGCTTTGGGATTGTAAGGAGGAAGCTTCTGCTTCTTTCCATACACAGAGTGACACCTGAGGAAACAAAAACAATGAACAAAAAGTAAAACCTGAACAATTAATAAATAACAACTTAAACTATATAGATAGCTATTTCTAAGTCCTCGACAATGGTGCCAAAAACTTGTTATGGTCCATCTACACACAAGTGTACGTAGTTAATCAAGTAATATAATGATAAGAGTAGAATGTCGTACTCACATGTACTAATTTTTAGCTAGTACTGTTCAAACTGAAATGAATTCTTTCTTCAAGTGTTTTTCCAAGAGTTCTTGAATATTATTTAAGTACTCGCTACAATTACTTGATAAGCAATTAAATTGAAAACTTTTGCACAACAACGTGAGCAAGTAAGTGTTGAACAATAAATGTGAATAATCTAGGGTTACGGTATCTACGTCAATCCCGCTGAGTTTTCCAGTTAAACTAATTACTTGATGATATATAGGTTATTGGTTGACAAGGTTTATATTACTGCAATTTTTTGTCAAACAATTAAAAGCCTATTCAAGTTATCTAACTCTATGTCTAGCAGAATAGAATTAACAAGAATTGCCTTAATATTTCCTGTATATCAACCATTTAACATCAACATTCATGAACAATCCAGAACCCCATAATTAAGAACTTAGCCACTCATAATCATGGAAAGAATCACGAGTATTTGAAAAGCATAAAATATAAAGATGAGATGGAAGAAAAAGAAACTAGGTGAAACCTATAATCAGCTGGAGTTTTTGCTCTTCTATGGTCAAACATTCCTCAAAAATGAGTTTCTAACCTATTTTGAACGTGTACAAACATACTCCGGCCTAAATCACCCTTGAAATAAAACACTGCAAAAAATCAGCTCCAACTTGGCCTACGTGCACCCAGCGTCGTGCATGCTCAACTTTCCCTGTGCTCCACCAACTCGTTTAGGTTCATCATGCAAGGCTGGAGCGTTGTGTTGCGCACACTGTTTTGCATGCATGTTCTCAATTTTCTTCCATCCTTCACATGTACGTCCTTGATCCCCGACTCAATCTCGTTTGAGTTTCTTGCACTTCTACTCGGACTTTGAAGCTCCAAATCATTTGTTCTAGCTAATTAGCTTGAAAACTATTCCTACACAGAAAATACACGTAATAAGCACGGCAGAATCAAAGTTTACTCAAATAACGGCAAAGGATCTTAAATGTGAGATAATCAATGCCGAACATCATTGGTCAAGTAAGAAAAGGACTTCACAAATGTGAAATATAGGAAAAAATCTCCCTCTGGTGTCCCAACGAGTAGCATGTAGGTCTTGTAAAATTTAAACAAAAATCTAGCACATAATTGGTTTTGTGTTAGGACCTGTCTGATTTCTGTTTCTAAGGTTCCTTTTTTAGATGACATCCGGACAATTAGAGTTGAGGCAAACTAAGTAGTGGAAGTGCTTTCAGTGTGAGGAGAATATTTCACATTTAACTGTTCTCATATTACAGAGAGGATGTGTTACTGTATGTTGTGTTTTCTTTTCTTTATTATGCTTCTGTGCCTTCATTATATTTCTGAGTTTGGTGTCAGAATTAATTAGGTCAAAACAGATGAAAGAGGGGTGGCACTAGTTGCATAATAAGGATGATAGAGACAAATAAAAATTAATTAGCAATCACATGATTGAGTTTGCTAAATAGCTAATCGGAAAAAGATTTAGATTCCATTTGAATTTATGTATTGGTTGTGAAAGGAATGCTCTATTTATGTTTGTTGCTACATATCAACTGTCAACAAATTCCTTAATAGCATAATAGAGCCCAAAGGATAGAACAGCTTTATTTGTTTAACTTCCCCCCTACCTTCCGTTTTTGTATACAATATTAATTGAAATCATCATTGACATGCTTAACATGCTAATCTAAATCCTCTATATCATTTGTCCTAGAGTTATGTTCCTCATACATGATATCTGATGTTGAATATTCTTAACAAATTTGCAGGTTGTGGCGAGGTCTGTGCAGAGCCATTTGCTTCTGTTCCTTTTGTTACACCTTG</genome_strand>
        <mrna_strand>GTTTGTAAAAAACTTGGTTCTTTGTGCAGCAGTGGTGGTACTTGTTTGAGGCATTGCCGGATTTTATGGATCTGTGAAGTAAGGAATTTGATTGATTGATTGGGGAGCTGCATTTTGTTGTTACAGATGCATTATTCGGATGTTACTGAAGGAAGCTTATTTGATGGAGGGTTTTTTTGTTTTTAGTGTTGAGTAGAACCCTATAGAATAATGCTTTGATACTACTGATGATGGTGTTTGGGAATTGCCCATTTGAGAGAGTAACATGCCAACTTTGATGCTTCTCTTTCTTCTTTCTTTACTCACTCTGCTTACTACTACTACTCTAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATAACATTGCCACACGTTTACCTGTCTCCTACTCTACCGCCAAACAAGCCTTACTTTGCAAGCAAACTTTTTTTATGAGATG..............................................................................................................................................CAAGATTATTGTCAACTCTGTGTGCTCATTTGCTCCAATATCGCCACCGCATAGACGCCATTTTAAACCACATATGATTCCCTCTAGGGCGCCTGCTCCTTCCCCTGCATCTCGAG............................................................................GCCTTGCTGCTGCTCCAATTGCCACTCGAGTGGTATGGACATCACCGTCGTCGACATAATCGGCCGAGAGCCCGTGTTTCCCCATCTCCTGCACTGGGCTCGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGGCGATGTCTGTGCAGAGCCATTTGCTTCTGTTCCTTTTGTTACACCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0045A18-gKVbu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454330" ref_strand="+" ref_description="SGN-E454330 [cSTS-22-L22]">
      <seq>tctctctatatctattttctctctctgcctgtagctgagttgagctgaattcgtggcggagatccatcatttgtcgtttgtaaaaacttgttctttgtgcagcagtggtggtacttgtttgaggcatttccggatttcatggatctgtgaagtagaacattcgattgattgattggggacctgcattttgctgtagagatgcagtattcggatttgagtgaaggaagttcagttgatggagggtgtttttgtttttagtttgagtagaaccctagagaagaatgctttgatactactgaggatggtgtttgggaattgcggttttgagagagaagatgccaactttgatgcgtctctttcttctttctttactcactctgcttactactacttctcaagggataacattgccgcacatttacctgtctcctactctaccgccaaacaagccttactttgcaagcaaactttttttagaagatgcaagattagtgtcaactcatgtctcatttgctccaatgtcagcaccgcatagacaccattttaaaccacatctgattccctccagggcgcctgctccttcccctgcatctcaaggtcttgctactgctccaattgccagtcgagtggttggacatcaccgtcatcgtcatcatcggccgagagcccgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0045A18-gKVbu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0045A18.1" temp_strand="-" temp_description="C09SLe0045A18.1  AC234416.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0045A18 upload_account_name:spain (1 - 107156)">
        <position start="78677" stop="76591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78341" g_stop="77984" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="399" r_length="355" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77983" i_stop="77383" i_length="601">
            <donor d_prob="0.981" d_score="0.94"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77382" g_stop="77299" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="483" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77298" i_stop="77157" i_length="142">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77156" g_stop="77043" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="597" r_length="114" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77042" i_stop="76967" i_length="76">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.703" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76966" g_stop="76891" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="673" r_length="76" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0045A18.1" gen_strand="-" ref_id="SGN-E454330" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0045A18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E454330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78341" e_stop="77984"/>
          <exon e_start="77382" e_stop="77299"/>
          <exon e_start="77156" e_stop="77043"/>
          <exon e_start="76966" e_stop="76891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAATTCGTGGCGGAGATCCATCATTTGTCGTTTGTAAAAAACTTGGTTCTTTGTGCAGCAGTGGTGGTACTTGTTTGAGGCATTGCCGGATTTTATGGATCTGTGAAGTAGGGAATTTGATTGATTGATTGGGGAGCTGCATTTTGTTGTTAGAGATGCAGTATTCGGATGTTAGTGAAGGAAGTTTAGTTGATGGAGGGTTTTTTTGTTTTTAGTTTGAGTAGAACCCTAGAGAAGAATGCTTTGATACTACTGAGGATGGTGTTTGGGAATTGCCCATTTGAGAGAGAAGATGCCAACTTTGATGCTTCTCTTTCTTCTTTCTTTACTCACTCTGCTTACTACTACTACTCTAGGTAATTTTTATTTTTTGTACCCCTTTTTTTTTTTTTTGCTCGAGTAGAACCCTAGATATGCTGGAATTAGGCACATTTTGATATGCCTGCTTCTTTTGCTTCCTGTTTCTGTTTCATTTGTTGATGGGTTGTTATGAAATTTCTGGTGGGATTTTACCAGGCATTTCTGTGGAGTTTAGAACTGTTGGGTGTTTGAATTTTTGTTTTAAAATGCACACTCCAATTAGAGGAAAGGTTCTAGGGTGACTACTTTGCAATGCAAGAATCAACAAATGCGGCTTCCTGTTTGAAAAGATATAACTATAGAGAGCTTATATATTTGACAGCAACTTGTATTGGTAATGCAGCATAATTGATGTATAAAGAAAGCCCTTTCCTTTTTCGAAGGAAGGAGGTAGACAGACGTTAGTTAATGGATGCTTGCAGCCTGTAAATTAGAAGTATTTCCTTTTCAGTTATCCTGTTTTCCAAGACTTTAAGATATTTTTCCCTTTCAGATAAGACCTTTCAATCTGTGAAATTTAGTGCATGCACGATTGGCTGTTCTTTCTGTATGTGAAGTTTGGTTACTTATTTGCTTCTAAAGCTTCTAACTTTTCAGGGATAACATTGCCACACATTTACCTGTCTCCTACTCTACCGCCAAACAAGCCTTACTTTGCAAGCAAACTTTTTTTAGGAGATGGTAAGATTGATTCTTCAAATTCTGCTTCTTATGGCTCTGTGTTGTTATTTGTTGACTGATTAGAGAAGCCACTTGTTATGCCAATTTAGTGATAAATATGAATCTGGAACATACTTAATTATCTCTTACATTGTTTTTGCAGCAAGATTAGTGTCAACTCATGTCTCATTTGCTCCAATATCAGCACCGCATAGACACCATTTTAAACCACATATGATTCCCTCTAGGGCGCCTGCTCCTTCCCCTGCATCTCAAGGTATTGAGAGTTGCTCTTCCCTCACCATCTTTTAGAACTTCTTGAGCTTTTACTGATGGGGAAATCTAATCTTTAGGCCTTGCTGCTGCTCCAATTGCCAGTCGAGTGGTTGGACATCACCGTCATCGTCATAATCGGCCGAGAGCCCGTGT</genome_strand>
        <mrna_strand>CTGAATTCGTGGCGGAGATCCATCATTTGTCGTTTGT-AAAAACTT-GTTCTTTGTGCAGCAGTGGTGGTACTTGTTTGAGGCATTTCCGGATTTCATGGATCTGTGAAGTAGAACATTCGATTGATTGATTGGGGACCTGCATTTTGCTG-TAGAGATGCAGTATTCGGATTTGAGTGAAGGAAGTTCAGTTGATGGAGGGTGTTTTTGTTTTTAGTTTGAGTAGAACCCTAGAGAAGAATGCTTTGATACTACTGAGGATGGTGTTTGGGAATTGCGGTTTTGAGAGAGAAGATGCCAACTTTGATGCGTCTCTTTCTTCTTTCTTTACTCACTCTGCTTACTACTACTTCTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATAACATTGCCGCACATTTACCTGTCTCCTACTCTACCGCCAAACAAGCCTTACTTTGCAAGCAAACTTTTTTTAGAAGATG..............................................................................................................................................CAAGATTAGTGTCAACTCATGTCTCATTTGCTCCAATGTCAGCACCGCATAGACACCATTTTAAACCACATCTGATTCCCTCCAGGGCGCCTGCTCCTTCCCCTGCATCTCAAG............................................................................GTCTTGCTACTGCTCCAATTGCCAGTCGAGTGGTTGGACATCACCGTCATCGTCATCATCGGCCGAGAGCCCGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0045A18-gKVbu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E405619" ref_strand="+" ref_description="SGN-E405619 [PPI-1-I5]">
      <seq>gtagctgagttgagctgaattcgtggcggagatccatcatttgtcgtttgtaaaaacttgttctttgtgcagcagtggtggtactcgtttgaggcatttccggatttcatggatctgtgaagtagaacattcgattgattgattggggacctgcattttgctgtagagatgcagtattcggatttgagtgaaggaagttcagttgatggagggtgtttttgtttttagtttgagtagaaccctagagaagaatgctttgatactactgaggatggtgtttgggaattgcggttttgagagagaagatgccaactttgatgcgtctctttcttctttctttactcactctgcttactactacttctcaagggataacattgccgcacatttacctgtctcctactctaccgccaaacaagccttactttgcaagcaaactttttttagaagatgcaagattagtgtcaactcatgtctcatttgctccaatgtcagcaccgcatagacaccattttaaaccacatctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0045A18-gKVbu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0045A18.1" temp_strand="-" temp_description="C09SLe0045A18.1  AC234416.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0045A18 upload_account_name:spain (1 - 107156)">
        <position start="78646" stop="76782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78341" g_stop="77984" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="369" r_length="355" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77983" i_stop="77383" i_length="601">
            <donor d_prob="0.981" d_score="0.94"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77382" g_stop="77299" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="453" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77298" i_stop="77157" i_length="142">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77156" g_stop="77082" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="528" r_length="75" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0045A18.1" gen_strand="-" ref_id="SGN-E405619" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0045A18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E405619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78341" e_stop="77984"/>
          <exon e_start="77382" e_stop="77299"/>
          <exon e_start="77156" e_stop="77082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAATTCGTGGCGGAGATCCATCATTTGTCGTTTGTAAAAAACTTGGTTCTTTGTGCAGCAGTGGTGGTACTTGTTTGAGGCATTGCCGGATTTTATGGATCTGTGAAGTAGGGAATTTGATTGATTGATTGGGGAGCTGCATTTTGTTGTTAGAGATGCAGTATTCGGATGTTAGTGAAGGAAGTTTAGTTGATGGAGGGTTTTTTTGTTTTTAGTTTGAGTAGAACCCTAGAGAAGAATGCTTTGATACTACTGAGGATGGTGTTTGGGAATTGCCCATTTGAGAGAGAAGATGCCAACTTTGATGCTTCTCTTTCTTCTTTCTTTACTCACTCTGCTTACTACTACTACTCTAGGTAATTTTTATTTTTTGTACCCCTTTTTTTTTTTTTTGCTCGAGTAGAACCCTAGATATGCTGGAATTAGGCACATTTTGATATGCCTGCTTCTTTTGCTTCCTGTTTCTGTTTCATTTGTTGATGGGTTGTTATGAAATTTCTGGTGGGATTTTACCAGGCATTTCTGTGGAGTTTAGAACTGTTGGGTGTTTGAATTTTTGTTTTAAAATGCACACTCCAATTAGAGGAAAGGTTCTAGGGTGACTACTTTGCAATGCAAGAATCAACAAATGCGGCTTCCTGTTTGAAAAGATATAACTATAGAGAGCTTATATATTTGACAGCAACTTGTATTGGTAATGCAGCATAATTGATGTATAAAGAAAGCCCTTTCCTTTTTCGAAGGAAGGAGGTAGACAGACGTTAGTTAATGGATGCTTGCAGCCTGTAAATTAGAAGTATTTCCTTTTCAGTTATCCTGTTTTCCAAGACTTTAAGATATTTTTCCCTTTCAGATAAGACCTTTCAATCTGTGAAATTTAGTGCATGCACGATTGGCTGTTCTTTCTGTATGTGAAGTTTGGTTACTTATTTGCTTCTAAAGCTTCTAACTTTTCAGGGATAACATTGCCACACATTTACCTGTCTCCTACTCTACCGCCAAACAAGCCTTACTTTGCAAGCAAACTTTTTTTAGGAGATGGTAAGATTGATTCTTCAAATTCTGCTTCTTATGGCTCTGTGTTGTTATTTGTTGACTGATTAGAGAAGCCACTTGTTATGCCAATTTAGTGATAAATATGAATCTGGAACATACTTAATTATCTCTTACATTGTTTTTGCAGCAAGATTAGTGTCAACTCATGTCTCATTTGCTCCAATATCAGCACCGCATAGACACCATTTTAAACCACATATGA</genome_strand>
        <mrna_strand>CTGAATTCGTGGCGGAGATCCATCATTTGTCGTTTGT-AAAAACTT-GTTCTTTGTGCAGCAGTGGTGGTACTCGTTTGAGGCATTTCCGGATTTCATGGATCTGTGAAGTAGAACATTCGATTGATTGATTGGGGACCTGCATTTTGCTG-TAGAGATGCAGTATTCGGATTTGAGTGAAGGAAGTTCAGTTGATGGAGGGTGTTTTTGTTTTTAGTTTGAGTAGAACCCTAGAGAAGAATGCTTTGATACTACTGAGGATGGTGTTTGGGAATTGCGGTTTTGAGAGAGAAGATGCCAACTTTGATGCGTCTCTTTCTTCTTTCTTTACTCACTCTGCTTACTACTACTTCTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATAACATTGCCGCACATTTACCTGTCTCCTACTCTACCGCCAAACAAGCCTTACTTTGCAAGCAAACTTTTTTTAGAAGATG..............................................................................................................................................CAAGATTAGTGTCAACTCATGTCTCATTTGCTCCAATGTCAGCACCGCATAGACACCATTTTAAACCACATCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0045A18-gKVbu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313280" ref_strand="+" ref_description="SGN-E313280 [cTOA-18-P19]">
      <seq>attgaaaaactttcaatctgatgctctttctttgagattgcaatgactcgttctcctgctgcaacatccaacacctccagaaagagggcaagaaaatcaacaccttcatgtcgaaggatatggactccagtagaggaacttactcttatagatggattaaaagaattgtgtgttaatggttggagaggagataatgaaacctttagacatggatatttaatggaattggaacactacatgaatgctcgtcatcctagttgtggattgaaatctctaccacatgttgattctaaaataagagcatggaaaaagagttatgcaaccatatcgttgctaaagagtcgaagtggtttaggatttcaatatagtgacggaagtatcttagttgattatccaaaagcttgggatgacttgataaaggttgatccaaatgccaaatcaatgaacttaaaaaaatggccattatttgctgactgggaagagatatttggcaaggatagagctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0045A18-gKVbu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0045A18.1" temp_strand="+" temp_description="C09SLe0045A18.1  AC234416.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0045A18 upload_account_name:spain (1 - 107156)">
        <position start="80423" stop="83905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80723" g_stop="80758" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80759" i_stop="83023" i_length="2265">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83024" g_stop="83407" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="420" r_length="384" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83408" i_stop="83518" i_length="111">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83519" g_stop="83605" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="507" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0045A18.1" gen_strand="+" ref_id="SGN-E313280" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0045A18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80723" e_stop="80758"/>
          <exon e_start="83024" e_stop="83407"/>
          <exon e_start="83519" e_stop="83605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAAAAACTTTCAATCTGACGTTCTTTCTTTGAGGTTAGAAGTTCTCAAACTCAAATTTTGGCTGATTTTTTTATTTCTTCTTCTTCTTCTCCTCCAATTTTCTCTTTTGTGTTTTTCCTCTTGTTAATCCGATGAGATGAATGAAATTGTAGATCTTCTCAGTATTTTCTAGTTAAGTTGATGTTTGAGTACACCTAAATTTGATGTGGGTTTTGTTTTATTTGTTCAAAATTTGTGATTTATGAACAAATGGGTTCATTAAGTTTAGTTGCTTTAGCTTCTAAAATTGCAAAAGATAAACATGTATTTGCAGTTTGACAAAATAGTATTAGTATTCTAGCTTTAGAAGCCAAACAAAAATAAACATTTTACCCTGTTTTTCATGTTACTTTTCATTTTCTTTTCAATAAAATTGAACATTTTAGTATAAAACCATCTATTACCTTCCTATTATACAAAATGTGTCTGCAATACTTAATTAAGTAACATGATTGATACTCTTTTTTCTTTTGGGATTCAATTTGATCATGATGTTGTCATTTTTAATTGGAAAATAGGTATAATGGATTCTCAGCAATTGTGCGATGTTGAATCCTTTATGATTCTCGAGGAGATTGTGGTGCATTCCTATATTGTCCTTATCTGCTTTTTTATGGCTATTTACAGCATGTTATTAAGAAAACAATCTACAAATAGGCGGGGCATTCGATATTGTATGAGTGCTAGAATTCCAAAAATCTTGTCTCATCTGAATGTTCTCATTCGTGACAATGATATTGTATGTATTGACAAGCTTAGGATGGATAGAAACGCCTTTCACATATTAGCCTCCTTAGCCAAGAATATTGGAGGTTTGACTGACAGTAAAATATGTCGAGTACTGAAAAGTTAGCAATGTTTTTAAATATTTTGGCTCATCATGAAAAGAACAGGTCTATCAAAGTTGATTATATTAGATCGGGGTGGAGTGTAAGTCGAGCCTTTAATGAATGTCTAAGAGCTATTCTTAAACTAACTCCAGTGTTACTTGTTAAACTTAATCCGGTGCTCGAAGATGATAGTGATGATCGATGGAAATGGTTTAAGGTAGGTAAATTTCAATCTAACATTTGATTTACTACAATAAACTTGAAATATTATGGTGAAAGTATTTTTATTTTTAATAGTCATTTAGTATTTAGATTTGAATTTATCTTATAGGGTTGTCTTGGTGCATTGGATGGTACTTACATTTCCATTAGAGTTGAAGCAATATATAAACCAAGATACAGAATACGGAAAGGAGATATAGCAACTAATGTCTTGGGGGTTTGTGATAGAAATCTCAACTTTATTTATGTATTACCTGGTTGGGAGGGATCAGCCGCTGATGGTCGTGTATTGCGAGATGCTGTTGTACGAAGAAATGGGTTGAAAGTACCTCATGGTATGTTAAATAATAGGCAGACCCTTGTTTATTTCTACTACATCAAAATAGAATAATATTTAAAGTAATTATATTATTATTTATGTTTTTAGGCAATTACTATTTGTGCGACGGAGGATATACAAATGGAAATGGTTTTCTGTCTCCCTATCGAGGATATAGATATTGGCTAAAGGATTGGCAAGGTGACAATCCATCACCTCGATGTCGAGAAGAGCTCTTTAATATGAAGCATGCTAGGGCACGTAATGTCATTGAAAGAACATTTGGACTATTAAAAGGACGTTGGGGAATTCTTAGAAGTCCTTCGTGGTACTTAGTTAAGGTTCACAATAGAATTATTAGTGCATGTTGTTTGATACACAATTTCATTCGAAGAGAGATGGAAGCTGACCCCTTAGATGTGGAAATGGATTTCCACATGGAGAATCAACATGAACATGAAAATATTAATACAATTGAAACATCTGATGAGTGGACCACTTGGAGGGATGAACTAGCTCAGTCTATGTGGAATGAACGATTGGGAAATCAATCTTTATAATTTTAAACTATGTGTTAACTTTTGGTGTGGTTATGCACTTTTCCTTTTGGTTTTCCATTCACTGTAAAATGTAATACCGTCTATTATTTTGTGAAAATGAATGGTCAATCTTTTGTATGTCTCACATTGTTATTTGTACAAACAAACAGTGAATCTCAATGTATATCTATTATTTTATAATATAAGCAGTGAAATTCTCTTTATCTCTTCACATTATCTTTTTCTTAGACCAATAAAGTTGTATTACAATTAATTTGACTATGATTGTGATAATTTACTTGTAAGTTGTAACTTAGTATTACTTGTGATTTCATTTATAATTTTACAGATTGAAATGGCTAGTTTTCCTGCTGCAACATCCAACACGTCCAGAAAGAGGGCAAGAAAATCAACACCTTCATGTCGAAGGATATGGACTCCAGAAGAGGAACTTACTCTTATAGTTGGATTAAAAGAATTGTGTGTTAATGGTTGGAGAGGAGATAATGGAACCTTTAGACATGGATATTTAATGGAATTGGAACACTACATGAATGCTCGTCATCCTAGTTGTGGATTGAAATTTCTACCACATGTTGATTCTAAAATAAGAGCATGGAAAAAGAGTTATGCAACCATATCGTTGCTAAAGAGTCGAAGTGGTTTAGGATTTCAATATAGTGACGAAAGTATCTTAGTTGATTATCCAAAAGCTTGGGATGACTTGATAAAGGTGATTTATATTTATTTGAAATCATTACGCAATTTCTACTTACTTGTATTTTCTCTTGGTTATGGATCTCTGTCTTTGGAATATTGACAGTTACTTTCTTTATTTTTCTAGGTTGATCCAAATGCCAAATCAATGAACTTAAAAAAATGGCCATTATTTGCTGACTGGGAAGAGATATTTGGCAAGGATAGAGCTACT</genome_strand>
        <mrna_strand>ATTGAAAAACTTTCAATCTGATGCTCTTTCTTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAATGACTCGTTCTCCTGCTGCAACATCCAACACCTCCAGAAAGAGGGCAAGAAAATCAACACCTTCATGTCGAAGGATATGGACTCCAGTAGAGGAACTTACTCTTATAGATGGATTAAAAGAATTGTGTGTTAATGGTTGGAGAGGAGATAATGAAACCTTTAGACATGGATATTTAATGGAATTGGAACACTACATGAATGCTCGTCATCCTAGTTGTGGATTGAAATCTCTACCACATGTTGATTCTAAAATAAGAGCATGGAAAAAGAGTTATGCAACCATATCGTTGCTAAAGAGTCGAAGTGGTTTAGGATTTCAATATAGTGACGGAAGTATCTTAGTTGATTATCCAAAAGCTTGGGATGACTTGATAAAG...............................................................................................................GTTGATCCAAATGCCAAATCAATGAACTTAAAAAAATGGCCATTATTTGCTGACTGGGAAGAGATATTTGGCAAGGATAGAGCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0045A18-gKVbu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539036" ref_strand="+" ref_description="SGN-E539036 [TUS-58-J10]">
      <seq>tttcaatctgatgttctttctttgagattgaaatgactagttttcctgctgcaacatccaacacgtccagaaagagggcaagaaaatcaacaccttcatgtcgaaggatatggactccagtagaggaacttactcttatagatggattaaaagaattgtgtgttaatggttggagaggagataatgaaacctttagacatggatatttaatggaattggaacactacatgaatgctcgtcatcctagttgtggattgaaatctctaccacatgttgattctaaaataagagcatggaaaaagagttatgcaaccatatcgttgctaaagagtcgaagtggtttaggatttcaatatagtgacggaagtatcttagttgattatccaaaagcttgggatgacttgataaaggttgatccaaatgccaaatcaatgaacttaaaaaaatggccattatttgctgactgggaagagatatttggcaaggatagagctactggagagtttgcagaaggtccagaagatgctgttgaagaaatagaaagaattgaatctcaagaaattactaatggcatgtctgtgggatttcctattgatgttgtcgacatagatgatgcttcaggcacaagagaaaatcaagctgctcaagaggaacctaacgtatcaactggagcaacacaaagtccatttactgctcaagctgaacctaatgaatcaactggagcagcaaaaagttcattcaccgctacaaaaggtgaaacccatcaatctcagaaaaagggcactgttttaagcatcatcttctaaagtcacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0045A18-gKVbu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0045A18.1" temp_strand="+" temp_description="C09SLe0045A18.1  AC234416.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0045A18 upload_account_name:spain (1 - 107156)">
        <position start="82703" stop="84224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83024" g_stop="83407" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="410" r_length="384" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83408" i_stop="83518" i_length="111">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83519" g_stop="83920" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="810" r_length="400" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0045A18.1" gen_strand="+" ref_id="SGN-E539036" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0045A18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83024" e_stop="83407"/>
          <exon e_start="83519" e_stop="83920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAAATGGCTAGTTTTCCTGCTGCAACATCCAACACGTCCAGAAAGAGGGCAAGAAAATCAACACCTTCATGTCGAAGGATATGGACTCCAGAAGAGGAACTTACTCTTATAGTTGGATTAAAAGAATTGTGTGTTAATGGTTGGAGAGGAGATAATGGAACCTTTAGACATGGATATTTAATGGAATTGGAACACTACATGAATGCTCGTCATCCTAGTTGTGGATTGAAATTTCTACCACATGTTGATTCTAAAATAAGAGCATGGAAAAAGAGTTATGCAACCATATCGTTGCTAAAGAGTCGAAGTGGTTTAGGATTTCAATATAGTGACGAAAGTATCTTAGTTGATTATCCAAAAGCTTGGGATGACTTGATAAAGGTGATTTATATTTATTTGAAATCATTACGCAATTTCTACTTACTTGTATTTTCTCTTGGTTATGGATCTCTGTCTTTGGAATATTGACAGTTACTTTCTTTATTTTTCTAGGTTGATCCAAATGCCAAATCAATGAACTTAAAAAAATGGCCATTATTTGCTGACTGGGAAGAGATATTTGGCAAGGATAGAGCTACTGGAGAGTTTGCAGAAGGTCCAGAAGATGCTGTTGAAGAAATAGAAAGAATTGAATCTCAAGAAATTACTAATGGCATGTCTGTGAGATTTCCTATTGATGTTGTCGACAAAGATGATGCTTCAGGCACAAGAGAAAATCAAGCTGCTCAAGAGGAACCTAATGTATCAACTGGAGCAACACAAAGTCCATTTACTGCTCAAGCTGAACCTAATGAATCAACTGGAGCAGCACAAAGTTCATTCACCGCTACAAAAGGTGAAACCCATCAATCTCAGAAAAAGGGCAACTGTTTTAAAGCATCATCTTCTAAAGTC</genome_strand>
        <mrna_strand>ATTGAAATGACTAGTTTTCCTGCTGCAACATCCAACACGTCCAGAAAGAGGGCAAGAAAATCAACACCTTCATGTCGAAGGATATGGACTCCAGTAGAGGAACTTACTCTTATAGATGGATTAAAAGAATTGTGTGTTAATGGTTGGAGAGGAGATAATGAAACCTTTAGACATGGATATTTAATGGAATTGGAACACTACATGAATGCTCGTCATCCTAGTTGTGGATTGAAATCTCTACCACATGTTGATTCTAAAATAAGAGCATGGAAAAAGAGTTATGCAACCATATCGTTGCTAAAGAGTCGAAGTGGTTTAGGATTTCAATATAGTGACGGAAGTATCTTAGTTGATTATCCAAAAGCTTGGGATGACTTGATAAAG...............................................................................................................GTTGATCCAAATGCCAAATCAATGAACTTAAAAAAATGGCCATTATTTGCTGACTGGGAAGAGATATTTGGCAAGGATAGAGCTACTGGAGAGTTTGCAGAAGGTCCAGAAGATGCTGTTGAAGAAATAGAAAGAATTGAATCTCAAGAAATTACTAATGGCATGTCTGTGGGATTTCCTATTGATGTTGTCGACATAGATGATGCTTCAGGCACAAGAGAAAATCAAGCTGCTCAAGAGGAACCTAACGTATCAACTGGAGCAACACAAAGTCCATTTACTGCTCAAGCTGAACCTAATGAATCAACTGGAGCAGCAAAAAGTTCATTCACCGCTACAAAAGGTGAAACCCATCAATCTCAGAAAAAGGGC-ACTGTTTT-AAGCATCATCTTCTAAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0045A18-gKVbu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279628" ref_strand="+" ref_description="SGN-E279628 [cLER-5-K11]">
      <seq>ttcaatctgatgttctttctttgagattgaaatgactagttttcctgctgcaacatccaacacgtccagaaagagggcaagaaaatcaacaccttcatgtcgaaggatatggactccagtagaggaacttactcttatagatggattaaaagaattgtgtgttaatggttggagaggagataatgaaacctttagacatggatatttaatggaattggaacactacatgaatgctcgtcatcctagttgtggattgaaatctctaccacatgttgattctaaaataagagcatggaaaaagagttatgcaaccatatcgttgctaaagagtcgaagtggtttaggatttcaatatagtgacggaagtatcttagttgattatccaaaagcttgggatgacttgataaaggttgatccaaatgccaaatcaatgaacttaaaaaaatggccattatttgctgactgggaagagatatttggcaaggatagagctactggagagtttgcagaaggtccagaagatgctgttgaagaaatagaaagaattgaatctcaagaaattactaatggcatgtctgtgggatttcctattgatgttggcgacatagatgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0045A18-gKVbu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0045A18.1" temp_strand="+" temp_description="C09SLe0045A18.1  AC234416.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0045A18 upload_account_name:spain (1 - 107156)">
        <position start="82703" stop="84025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83024" g_stop="83407" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="409" r_length="384" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83408" i_stop="83518" i_length="111">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83519" g_stop="83725" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="616" r_length="207" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0045A18.1" gen_strand="+" ref_id="SGN-E279628" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0045A18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83024" e_stop="83407"/>
          <exon e_start="83519" e_stop="83725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAAATGGCTAGTTTTCCTGCTGCAACATCCAACACGTCCAGAAAGAGGGCAAGAAAATCAACACCTTCATGTCGAAGGATATGGACTCCAGAAGAGGAACTTACTCTTATAGTTGGATTAAAAGAATTGTGTGTTAATGGTTGGAGAGGAGATAATGGAACCTTTAGACATGGATATTTAATGGAATTGGAACACTACATGAATGCTCGTCATCCTAGTTGTGGATTGAAATTTCTACCACATGTTGATTCTAAAATAAGAGCATGGAAAAAGAGTTATGCAACCATATCGTTGCTAAAGAGTCGAAGTGGTTTAGGATTTCAATATAGTGACGAAAGTATCTTAGTTGATTATCCAAAAGCTTGGGATGACTTGATAAAGGTGATTTATATTTATTTGAAATCATTACGCAATTTCTACTTACTTGTATTTTCTCTTGGTTATGGATCTCTGTCTTTGGAATATTGACAGTTACTTTCTTTATTTTTCTAGGTTGATCCAAATGCCAAATCAATGAACTTAAAAAAATGGCCATTATTTGCTGACTGGGAAGAGATATTTGGCAAGGATAGAGCTACTGGAGAGTTTGCAGAAGGTCCAGAAGATGCTGTTGAAGAAATAGAAAGAATTGAATCTCAAGAAATTACTAATGGCATGTCTGTGAGATTTCCTATTGATGTTGTCGACAAAGATGATGCT</genome_strand>
        <mrna_strand>ATTGAAATGACTAGTTTTCCTGCTGCAACATCCAACACGTCCAGAAAGAGGGCAAGAAAATCAACACCTTCATGTCGAAGGATATGGACTCCAGTAGAGGAACTTACTCTTATAGATGGATTAAAAGAATTGTGTGTTAATGGTTGGAGAGGAGATAATGAAACCTTTAGACATGGATATTTAATGGAATTGGAACACTACATGAATGCTCGTCATCCTAGTTGTGGATTGAAATCTCTACCACATGTTGATTCTAAAATAAGAGCATGGAAAAAGAGTTATGCAACCATATCGTTGCTAAAGAGTCGAAGTGGTTTAGGATTTCAATATAGTGACGGAAGTATCTTAGTTGATTATCCAAAAGCTTGGGATGACTTGATAAAG...............................................................................................................GTTGATCCAAATGCCAAATCAATGAACTTAAAAAAATGGCCATTATTTGCTGACTGGGAAGAGATATTTGGCAAGGATAGAGCTACTGGAGAGTTTGCAGAAGGTCCAGAAGATGCTGTTGAAGAAATAGAAAGAATTGAATCTCAAGAAATTACTAATGGCATGTCTGTGGGATTTCCTATTGATGTTGGCGACATAGATGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0045A18-gKVbu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233833" ref_strand="+" ref_description="SGN-E233833 [cLEL-8-C24](-)">
      <seq>gcatcatcttctaaagtcaacgaaaaaggtagatgcaaaaaaaagaaaaacagttgaagatgataatgagactgttcttaaaggtttgatggaggtgatgaaacaattcactgaaagccatgataagagaatggcttctttaattgacaagctaggagagcgtgatctatctgaaattcgtggtaagatattttctattattggatcccctgcatatgaaatatacaactcagatgaacgagttaaggcaacaatgggaattactcaagatataaagagaatggaattcttcttaagcatcatcgaaattgaacgtcacagtatgatatggatgattattaatgataagctttaattcactgaatggtttttgtgtagatattttgtaaggtctaaccataatgggatcttttgttacctagtagaatgtccaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0045A18-gKVbu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0045A18.1" temp_strand="+" temp_description="C09SLe0045A18.1  AC234416.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0045A18 upload_account_name:spain (1 - 107156)">
        <position start="83603" stop="84638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83903" g_stop="84339" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84340" i_stop="84430" i_length="91">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.939" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84431" g_stop="84443" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="451" r_length="13" r_score="0.538"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0045A18.1" gen_strand="+" ref_id="SGN-E233833" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0045A18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83903" e_stop="84339"/>
          <exon e_start="84431" e_stop="84443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATCATCTTCTAAAGTCAACGAAAAAGGTAGATGC-AAAAAAAGAAAAACAGTTGAAGGTGATAATGAGACTGTTCTTAAAGGTTTGATGGAGGTGATGAAACAATTCACTGAAAGCCATGATAAGAGAATGGCTTTTTTAATTGACAAGCTAGGAGAGCGTGATCTATCTGAAATTCGTGGTAAGATATTTTCTATTATTGGATCCCCTGCATATGAAATATACAACTCAAATGAACGAGTTAAGGCAGCAATGGGAATTACTCAAGATATAAAGAGAATGGAATTCTTCTTAAGCATCAGCGAACTTGAATGTCACAGTATGATATGGATGATTATTAATGATAAGCTTTAATTCACTGAATGGTTTTTGTGTAGCTATTTTGTAAGGTCTAACCATAGTGGGATCTTTTGTTACCTAGTAGAATGTCCACAAATGTGCATATATGTGAATGTTGTGGGCTTAAAGTAGGTTATTTTTGTATAACAAATACATGATTATGTTCAATATTAGTGCTTTTGTAAGTAGCCAACTAAAATGA</genome_strand>
        <mrna_strand>GCATCATCTTCTAAAGTCAACGAAAAAGGTAGATGCAAAAAAAAGAAAAACAGTTGAAGATGATAATGAGACTGTTCTTAAAGGTTTGATGGAGGTGATGAAACAATTCACTGAAAGCCATGATAAGAGAATGGCTTCTTTAATTGACAAGCTAGGAGAGCGTGATCTATCTGAAATTCGTGGTAAGATATTTTCTATTATTGGATCCCCTGCATATGAAATATACAACTCAGATGAACGAGTTAAGGCAACAATGGGAATTACTCAAGATATAAAGAGAATGGAATTCTTCTTAAGCATCATCGAAATTGAACGTCACAGTATGATATGGATGATTATTAATGATAAGCTTTAATTCACTGAATGGTTTTTGTGTAGATATTTTGTAAGGTCTAACCATAATGGGATCTTTTGTTACCTAGTAGAATGTCCAAAAAA...........................................................................................AAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0045A18-gKVbu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E234436" ref_strand="+" ref_description="SGN-E234436 [cLEL-8-C24](-)">
      <seq>aaaaaaaagaaaaacagttgaagatgataatgagactgttcttaaaggtttgatggaggtgatgaaacaattcactgaaagccatgataagagaatggcttctttaattgacaagctaggagagcgtgatctatctgaaattcgtggtaagatattttctattattggatcccctgcatatgaaatatacaactcagatgaacgagttaaggcaacaatgggaattactcaagatataaagagaatggaattcttcttaagcatcatcgaaattgaacgtcacagtatgatatggatgattattaatgataagctttaattcactgaatggtttttgtgtagatattttgtaaggtctaaccataatgggatcttttgttacctagtagaatgtccaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0045A18-gKVbu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0045A18.1" temp_strand="+" temp_description="C09SLe0045A18.1  AC234416.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0045A18 upload_account_name:spain (1 - 107156)">
        <position start="83639" stop="84638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83938" g_stop="84339" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84340" i_stop="84430" i_length="91">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.939" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84431" g_stop="84443" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="415" r_length="13" r_score="0.538"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0045A18.1" gen_strand="+" ref_id="SGN-E234436" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0045A18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83938" e_stop="84339"/>
          <exon e_start="84431" e_stop="84443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAAAGAAAAACAGTTGAAGGTGATAATGAGACTGTTCTTAAAGGTTTGATGGAGGTGATGAAACAATTCACTGAAAGCCATGATAAGAGAATGGCTTTTTTAATTGACAAGCTAGGAGAGCGTGATCTATCTGAAATTCGTGGTAAGATATTTTCTATTATTGGATCCCCTGCATATGAAATATACAACTCAAATGAACGAGTTAAGGCAGCAATGGGAATTACTCAAGATATAAAGAGAATGGAATTCTTCTTAAGCATCAGCGAACTTGAATGTCACAGTATGATATGGATGATTATTAATGATAAGCTTTAATTCACTGAATGGTTTTTGTGTAGCTATTTTGTAAGGTCTAACCATAGTGGGATCTTTTGTTACCTAGTAGAATGTCCACAAATGTGCATATATGTGAATGTTGTGGGCTTAAAGTAGGTTATTTTTGTATAACAAATACATGATTATGTTCAATATTAGTGCTTTTGTAAGTAGCCAACTAAAATGA</genome_strand>
        <mrna_strand>AAAAAAAAGAAAAACAGTTGAAGATGATAATGAGACTGTTCTTAAAGGTTTGATGGAGGTGATGAAACAATTCACTGAAAGCCATGATAAGAGAATGGCTTCTTTAATTGACAAGCTAGGAGAGCGTGATCTATCTGAAATTCGTGGTAAGATATTTTCTATTATTGGATCCCCTGCATATGAAATATACAACTCAGATGAACGAGTTAAGGCAACAATGGGAATTACTCAAGATATAAAGAGAATGGAATTCTTCTTAAGCATCATCGAAATTGAACGTCACAGTATGATATGGATGATTATTAATGATAAGCTTTAATTCACTGAATGGTTTTTGTGTAGATATTTTGTAAGGTCTAACCATAATGGGATCTTTTGTTACCTAGTAGAATGTCCAAAAAA...........................................................................................AAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0045A18-gKVbu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241789" ref_strand="+" ref_description="SGN-E241789 [cLEE-10-M7]">
      <seq>atgtctgatcttcaaggacatcaagacatgaatgagagagaatccagtccgagctaggaacaatagctcaccctgaaatctgacgtgatgaagactggttagagttgcggttgagttgaagacgacggtacgtttgctgcactccacaattaacaaaaagaaaacataaaagtaggggtcagtacaaacacgagtactgagtagatatcatcggccaactcagaatagagaacaatatatatcaaataataaaataaaatcaaccataacacttaacaggtgacaacaacaagtaccataaccattgggcacaacccaagaacatctatgaggactcaagcctccacaccatactcatttgggaaacaggttcattaaattgagtacattaacataattcaagattcattctttttactatcgtggtgtcggaacgtgatactccgatcccctaatgctacgtgtcggttcgtgacacccgatcccctaatactacgtgtcggttcgttacacccgatctcctaatactacgtgccgattcgtgacacccgatccattaatactatgtgtcggttcgtgacacccgatccattaatactacgtgtcggttcgtgacacccgatcccctaacctcattcttttagttcatcaagccttcttttataccaagacatcatcattaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0045A18-gKVbu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0045A18.1" temp_strand="-" temp_description="C09SLe0045A18.1  AC234416.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0045A18 upload_account_name:spain (1 - 107156)">
        <position start="101117" stop="92621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93777" g_stop="93279" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.896"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93278" i_stop="93104" i_length="175">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93103" g_stop="92920" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="686" r_length="184" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0045A18.1" gen_strand="-" ref_id="SGN-E241789" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0045A18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93777" e_stop="93279"/>
          <exon e_start="93103" e_stop="92920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTCCGAACTTCAA-GACATCAAGACGCGAA-G-GAAAGAATCCAGTCCGAGCTAGGAACAATAGCTCACCCTGAAATCTGATGTGGTGAAGACTGGCTAGAGTTACGGTTGAGTTGAAGACGATGGTACGTTTGCTGCACTCCACAAATAACAAAGAGAAAACATACAAGTAAGGGTCAGTACAAGCACAAGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAAGCAATATATATCAGATAATAACATAAAATCAACCATAACACTTAACAGGTGACAACAACAAGTACCATAACCATTGGGCACAACCCAAGCACATCTATGAGGACTCAATCCTCCACACCATACTTATTTGTGAAA--GGTTCTTTAAGTTTTGAGTATATTAAGATAATTCAAGATTCATTCTCTTTATTCCTCTTGTGTAGGAACGTGACACTCCGATCCCCTAATACTACGTGTCGGTTCGTGACACCCGATCCACTAATACTACGTGTCGGTTCGTGACACCCGATCCCCCAATACTATGTGTCGGTTTGTGACACCCGATCCCCTAATACTATGTGTCGGTTCGTGACACCTGATCCCCTAATACTATGTGTCGGTTCATGACACCCGATTCCCTAATACTATGTGTCAATTCGTGACACCCGATCCCCTAATACTATGTGCCGGTTCGTGACACCCGATCCCCTAATACTATGTGTCGGTTCGTGACACCCGATCCACTAATACTATGTGTTGGTTCGTGACACCCGATCCACTAATACTATGTGTCAGTTCGTGACACCCGATCCACTAACCTCATTCTTTTAGTTCATCAAGCCTTCTTTTATACCAAGGCATCATTATTAATAG</genome_strand>
        <mrna_strand>ATGTCTGATCTTCAAGGACATCAAGACATGAATGAGAGAGAATCCAGTCCGAGCTAGGAACAATAGCTCACCCTGAAATCTGACGTGATGAAGACTGGTTAGAGTTGCGGTTGAGTTGAAGACGACGGTACGTTTGCTGCACTCCACAATTAACAAAAAGAAAACATAAAAGTAGGGGTCAGTACAAACACGAGTACTGAGTAGATATCATCGGCCAACTCAGAATAGAGAACAATATATATCAAATAATAAAATAAAATCAACCATAACACTTAACAGGTGACAACAACAAGTACCATAACCATTGGGCACAACCCAAGAACATCTATGAGGACTCAAGCCTCCACACCATACTCATTTGGGAAACAGGTTCATTAA--ATTGAGTACATTAACATAATTCAAGATTCATTCTTTTTACTATCGTGGTGTCGGAACGTGATACTCCGATCCCCTAATGCTACGTGTCGGTTCGTGACACCCGATCCCCTAATACTACGTGTCG...............................................................................................................................................................................GTTCGTTACACCCGATCTCCTAATACTACGTGCCGATTCGTGACACCCGATCCATTAATACTATGTGTCGGTTCGTGACACCCGATCCATTAATACTACGTGTCGGTTCGTGACACCCGATCCCCTAACCTCATTCTTTTAGTTCATCAAGCCTTCTTTTATACCAAGACATCATCATTAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0045A18-gKVbu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0045A18-gKVbu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0045A18.1" temp_strand="-" temp_description="C09SLe0045A18.1  AC234416.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0045A18 upload_account_name:spain (1 - 107156)">
        <position start="96367" stop="95437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96067" g_stop="95737" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0045A18.1" gen_strand="-" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0045A18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96067" e_stop="95737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCTCAGGCTTGGCCAACGTTACAGTTTTAGCATTACAATCGAAGATTGCAAAATTTGGGGAAAGCCAAGTCATACCCAGAATTACATCGAAATCAACCATCTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCATAAAAGTCACAAGACAATTCCTATACACCCTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGATCAAATAATACAGAAGCCACGCAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0045A18-gKVbu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352117" ref_strand="+" ref_description="SGN-E352117 [cTOS-13-N24]">
      <seq>tttgatcctgcctccacattttcatatgtatcttcctcatttgctactgttcttaatttacatagtgaatcgcttgacatacctattcgtgttctactccggtgggtgagtctgtgattgttgaaaaggtgtataggtcttgtcttgtgacatttgtgggagcaatactcatgtagacttggttatcctataaatggttgacttcgatgtaattctgggtatgacttggctgtctccaaattttgcaatcttggattgtaatgctaaaactgtaacgttggccaagcctgagatagatgcgttagtgtgggagggtgactacacttccactccagttcgtatcatctcctttctttgtgctaagagaatggttagtaaagggtgtttagctttcttggcacacctcagggatgatactacccaagtaccttcaattgagtcagtttcgatagtccgtgagtttctggatgtgtttcctgcagaccttcctggtatgccaccggatagggatattgacttttgcattgatctggagccgggtgatcaccccatttccatacccccttatagaatggctcccgctgagttgggggagttaaaggcccaacttcaagagttgttangtaagggcttcattangccaagtgcatccccttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0045A18-gKVbu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0045A18.1" temp_strand="+" temp_description="C09SLe0045A18.1  AC234416.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0045A18 upload_account_name:spain (1 - 107156)">
        <position start="95467" stop="96727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95767" g_stop="96427" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0045A18.1" gen_strand="+" ref_id="SGN-E352117" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0045A18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95767" e_stop="96427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATCCTGGATCCACATTTTCATATGTATCTTCCTCATTTGCTACTGGTCTTAATTTACATTGTGAATTGCTTGACATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAGGGTGTATAGGAATTGTCTTGTGACTTTTATGGGGAGCAATACTCATGTAGACTTGGTTATCTTAGAGATGGTTGATTTCGATGTAATTCTGGGTATGACTTGGCTTTCCCCAAATTTTGCAATCTTCGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGAGACAGATCTGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTCCTTCGTGCTAAGAGAATGGTTAGAAAGGGTTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCGGTTTCAATAGTCCGTGAGTTTCTGGACGTGTTTCCTGTAAACCTTCCTGGTATGCCACCGGATAGGGATATTGATTTCTGTATTGATCTGGAGCCGGGCACTCGCCCCATTTCCATACCCCCTTATAGGTTGGCTCCCGCTGAGTTAAGAGAGTTAAAGGCCCAACTTCAAGAGTTGTTAAACAAGGGCTTTATTAGACCAAGTGCATCCCCTTGGG</genome_strand>
        <mrna_strand>TTTGATCCTGCCTCCACATTTTCATATGTATCTTCCTCATTTGCTACTGTTCTTAATTTACATAGTGAATCGCTTGACATACCTATTCGTG-TTCTACTCCGGTGGGTGAGTCTGTGATTGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACATTTGT-GGGAGCAATACTCATGTAGACTTGGTTATCCTATAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTGTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGAGATAGATGCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTTGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCAGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTGATCACCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTGGGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTANGTAAGGGCTTCATTANGCCAAGTGCATCCCCTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0045A18-gKVbu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352950" ref_strand="+" ref_description="SGN-E352950 [cTOS-14-C13]">
      <seq>cctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaccccatagagataatgtctctattactttaatgcaatcactactgccgctaactccaaatcatgggtcggataattacgttcatgcacctttaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0045A18-gKVbu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0045A18.1" temp_strand="-" temp_description="C09SLe0045A18.1  AC234416.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0045A18 upload_account_name:spain (1 - 107156)">
        <position start="98173" stop="96987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97873" g_stop="97287" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0045A18.1" gen_strand="-" ref_id="SGN-E352950" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0045A18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97873" e_stop="97287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTGTAAGAATAGTGCGAATCAAATCATCGACGCGGGGTACACATACTCTTCCCTTAATTCTCAAAACACCTTCCTCATCGATTTTTGCTTCTTTATCCTCTCCTCGCAATACCTTATCTCGAATCCGAATCAGTTTCTCATTGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATTCTCCCTTCTCATTTACTTCTAGCCTCATAAAGTCATTAGCCAGAGTCTGAACCTCTCTAGACAATGGGCGTCTAGAAACCTGCAAGTGGGCTAGACTTCCCATTCTCCCTGCCTTTCTACTTAAGGCATCTGCCACCACATTAGACTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGTTCCATCTCTCTCCTCAGTCTCAAATTCAAATCTTTTTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACATTTAACCCCATATAGATAATGTCTCCATTGCTTTAATGCAAACACTACCGCAGCCAACTCCAAATCATGGGTCAGATAATTACGTTCATGCACCTTTAATTGC</genome_strand>
        <mrna_strand>CCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAACCCCATAGAGATAATGTCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0045A18-gKVbu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357100" ref_strand="+" ref_description="SGN-E357100 [cTOS-22-N3]">
      <seq>cctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaccccatagagataatgtctctattactttaatgcaatcactactgccgctaactccaaatcatgggtcggataattacgttcatgcacctttaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0045A18-gKVbu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0045A18.1" temp_strand="-" temp_description="C09SLe0045A18.1  AC234416.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0045A18 upload_account_name:spain (1 - 107156)">
        <position start="98173" stop="96987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97873" g_stop="97287" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0045A18.1" gen_strand="-" ref_id="SGN-E357100" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0045A18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97873" e_stop="97287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTGTAAGAATAGTGCGAATCAAATCATCGACGCGGGGTACACATACTCTTCCCTTAATTCTCAAAACACCTTCCTCATCGATTTTTGCTTCTTTATCCTCTCCTCGCAATACCTTATCTCGAATCCGAATCAGTTTCTCATTGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATTCTCCCTTCTCATTTACTTCTAGCCTCATAAAGTCATTAGCCAGAGTCTGAACCTCTCTAGACAATGGGCGTCTAGAAACCTGCAAGTGGGCTAGACTTCCCATTCTCCCTGCCTTTCTACTTAAGGCATCTGCCACCACATTAGACTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGTTCCATCTCTCTCCTCAGTCTCAAATTCAAATCTTTTTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACATTTAACCCCATATAGATAATGTCTCCATTGCTTTAATGCAAACACTACCGCAGCCAACTCCAAATCATGGGTCAGATAATTACGTTCATGCACCTTTAATTGC</genome_strand>
        <mrna_strand>CCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAACCCCATAGAGATAATGTCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0045A18-gKVbu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352647" ref_strand="+" ref_description="SGN-E352647 [cTOS-11-I7]">
      <seq>cctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaacccatagagataatggctctattactttaatgcaatcactactgccgctaactccaaatcatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0045A18-gKVbu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0045A18.1" temp_strand="-" temp_description="C09SLe0045A18.1  AC234416.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0045A18 upload_account_name:spain (1 - 107156)">
        <position start="98173" stop="97020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97873" g_stop="97320" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0045A18.1" gen_strand="-" ref_id="SGN-E352647" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0045A18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97873" e_stop="97320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTGTAAGAATAGTGCGAATCAAATCATCGACGCGGGGTACACATACTCTTCCCTTAATTCTCAAAACACCTTCCTCATCGATTTTTGCTTCTTTATCCTCTCCTCGCAATACCTTATCTCGAATCCGAATCAGTTTCTCATTGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATTCTCCCTTCTCATTTACTTCTAGCCTCATAAAGTCATTAGCCAGAGTCTGAACCTCTCTAGACAATGGGCGTCTAGAAACCTGCAAGTGGGCTAGACTTCCCATTCTCCCTGCCTTTCTACTTAAGGCATCTGCCACCACATTAGACTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGTTCCATCTCTCTCCTCAGTCTCAAATTCAAATCTTTTTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACATTTAACCCCATATAGATAATGTCTCCATTGCTTTAATGCAAACACTACCGCAGCCAACTCCAAATCATGG</genome_strand>
        <mrna_strand>CCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAAACCCATAGAGATAATGGCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLe0045A18-gKVbu/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353207" ref_strand="+" ref_description="SGN-E353207 [cTOS-14-B13]">
      <seq>tcggcatgtactgttttccaaaacttagaagtaaattgcgtacctctatctgatatgatggagagtggaactccgtgcaatcgaacaatttctaagatgtaaagtttggctaacttctctgcattgtaagtcaccttaaccgaaatagagtgagcagacttagttaatctgtcaacaatcacccaaatagagtcatacctacccatcgtctttggatgactaaccacgaagtccattgcaattctctcccacttccattcaggaatgggcattctctgaagtgtccctccaggcctctggtgttcatactttacttgctgacaattcgggcattgagcaacaaaattaacaatgtcacgcttcatcctactccaccaaaaatgttgctttaggtcacgatacatcttgtttgcaccaggatgtatagagtacttcgaactatgagcctatataagaatagtgtgaatcaaatcatcgacgcggggtacacatactccttcccttattctcaaaacaccttcctcatcgatttttgcttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLe0045A18-gKVbu/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLe0045A18.1" temp_strand="-" temp_description="C09SLe0045A18.1  AC234416.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLe0045A18 upload_account_name:spain (1 - 107156)">
        <position start="98618" stop="97477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98318" g_stop="97777" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLe0045A18.1" gen_strand="-" ref_id="SGN-E353207" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLe0045A18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98318" e_stop="97777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGCATGCAATGTTTTCCAAAATTTAGAAGTAAATGGCGCACCTCTATCTGATATAATGGAAAGTGGAACTCCATACAATCGAACAATTTCTGAGATGTAAAGTTTGGCTAACTTCTCTGCATTATAAGTCACTTTGACCGGAATGAAGTGAGCAGACTTAGTTAATCTGTCAACAATTACCCATATGGAGTCATACTTACCCATTGTCTTTGGAAGACCAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGACATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACTTGCTGACAATTCGGGCATTGAGCAACAAAATCAACAATGTCACGCTTCATCCTACTCTACCAAAAATGTTGCTTTAGGTCACGATACATCTTGGTTGCACCAGGATGTATAGAGTACTTTGAACTATGAGCCTTTGTAAGAATAGTGCGAATCAAATCATCGACGCGGGGTACACATACTCTTCCCTTAATTCTCAAAACACCTTCCTCATCGATTTTTGCTTCTTT</genome_strand>
        <mrna_strand>TCGGCATGTACTGTTTTCCAAAACTTAGAAGTAAATTGCGTACCTCTATCTGATATGATGGAGAGTGGAACTCCGTGCAATCGAACAATTTCTAAGATGTAAAGTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTAACCGAAATAGAGTGAGCAGACTTAGTTAATCTGTCAACAATCACCCAAATAGAGTCATACCTACCCATCGTCTTTGGATGACTAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACTTGCTGACAATTCGGGCATTGAGCAACAAAATTAACAATGTCACGCTTCATCCTACTCCACCAAAAATGTTGCTTTAGGTCACGATACATCTTGTTTGCACCAGGATGTATAGAGTACTTCGAACTATGAGCCTATATAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACTCCTTCCCTTATTCTCAAAACACCTTCCTCATCGATTTTTGCTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>24</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="30280" PGL_stop="39388"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30280" e_stop="30369"/>
            <exon e_start="30461" e_stop="30550"/>
            <exon e_start="30642" e_stop="30719"/>
            <exon e_start="31364" e_stop="31438"/>
            <exon e_start="31636" e_stop="31688"/>
            <exon e_start="36576" e_stop="36726"/>
            <exon e_start="36838" e_stop="36948"/>
            <exon e_start="38578" e_stop="38704"/>
            <exon e_start="38846" e_stop="38943"/>
            <exon e_start="39265" e_stop="39388"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.912" e_score="0.867"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="0.989"/>
          <exon-intron don_prob="0.934" acc_prob="0.966" e_score="0.987"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="0.973"/>
          <exon-intron don_prob="0.980" acc_prob="0.998" e_score="0.962"/>
          <exon-intron don_prob="0.866" acc_prob="0.937" e_score="0.972"/>
          <exon-intron don_prob="0.985" acc_prob="0.120" e_score="0.982"/>
          <exon-intron don_prob="0.930" acc_prob="0.966" e_score="0.984"/>
          <exon-intron don_prob="0.555" acc_prob="0.996" e_score="0.980"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.867">
            <gDNA_exon_boundary e_start="30280" e_stop="30369" e_length="90"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.912">
            <gDNA_intron_boundary i_start="30370" i_stop="30460" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="30461" e_stop="30550" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="30551" i_stop="30641" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="30642" e_stop="30719" e_length="78"/>
          </exon>
          <intron i_serial="3" don_prob="0.934" acc_prob="0.966">
            <gDNA_intron_boundary i_start="30720" i_stop="31363" i_length="644"/>
          </intron>
          <exon e_serial="4" e_score="0.973">
            <gDNA_exon_boundary e_start="31364" e_stop="31438" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="31439" i_stop="31635" i_length="197"/>
          </intron>
          <exon e_serial="5" e_score="0.962">
            <gDNA_exon_boundary e_start="31636" e_stop="31688" e_length="53"/>
          </exon>
          <intron i_serial="5" don_prob="0.980" acc_prob="0.998">
            <gDNA_intron_boundary i_start="31689" i_stop="36575" i_length="4887"/>
          </intron>
          <exon e_serial="6" e_score="0.972">
            <gDNA_exon_boundary e_start="36576" e_stop="36726" e_length="151"/>
          </exon>
          <intron i_serial="6" don_prob="0.866" acc_prob="0.937">
            <gDNA_intron_boundary i_start="36727" i_stop="36837" i_length="111"/>
          </intron>
          <exon e_serial="7" e_score="0.982">
            <gDNA_exon_boundary e_start="36838" e_stop="36948" e_length="111"/>
          </exon>
          <intron i_serial="7" don_prob="0.985" acc_prob="0.120">
            <gDNA_intron_boundary i_start="36949" i_stop="38577" i_length="1629"/>
          </intron>
          <exon e_serial="8" e_score="0.984">
            <gDNA_exon_boundary e_start="38578" e_stop="38704" e_length="127"/>
          </exon>
          <intron i_serial="8" don_prob="0.930" acc_prob="0.966">
            <gDNA_intron_boundary i_start="38705" i_stop="38845" i_length="141"/>
          </intron>
          <exon e_serial="9" e_score="0.980">
            <gDNA_exon_boundary e_start="38846" e_stop="38943" e_length="98"/>
          </exon>
          <intron i_serial="9" don_prob="0.555" acc_prob="0.996">
            <gDNA_intron_boundary i_start="38944" i_stop="39264" i_length="321"/>
          </intron>
          <exon e_serial="10" e_score="0.992">
            <gDNA_exon_boundary e_start="39265" e_stop="39388" e_length="124"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30280" stop="30369"/>
              <exon start="30461" stop="30550"/>
              <exon start="30642" stop="30719"/>
              <exon start="31364" stop="31438"/>
              <exon start="31636" stop="31688"/>
              <exon start="36576" stop="36719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36665" stop="36726"/>
              <exon start="36838" stop="36948"/>
              <exon start="38578" stop="38704"/>
              <exon start="38846" stop="38943"/>
              <exon start="39265" stop="39388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344960" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGACATTTTTGTGGGTGCAGAAATTTCAGTGTAAAAATGTCAATTCCGACGACTCAATCTTCCATATTGCTCCCTGAAGATCGAATCATA : TTAGGTTGTGGGGCTGTGTCAGTGGACTTTTTGGCTGCTGTTGCTTCTTATCCTAACCCAGATGATAAGATTCGAAGCACAAGCTTTGAG : GTTCAAGGAGGTGGAAATACTGGGAATGCTTTGACTTGTGCAGCTCGCCTAGGCTTAACTCCTAGGATTATTTCAAAG : GTTGCCGATGACTCTCAAGGAAAAGGGTTACTGGAGGAACTAGAAGCTGATGGTGTAAATTCGTCTTTTATGGTG : GTGTCAGAAGGGGGAAATTCACCGTTTACCTACATCATTGTTGACAACCAAAC : GAAGACTCGCACTTGCATTCACACCCCTGGCTATCCACCCATGATACCCTCTGATCTTTCCCAATCAAATTTATTGTCGGCCTTGGATGGTGCTAAACTTGTCCATTTCGATGGGAGATTGCATGAAACTGCTGCTATTGTAGCAGAGGAG : GCAAATAGAAGGGGCATACCCATTTTAATTGACGCTGAGAGGAAAAGGGAAGGATTGGATTATCTTTTAAACTTTGCAAGTTATGTTGTGTGCTCAACCAAATTTCCTCAG : GAATGGACTGAGGCTTCTTCTATTCCCACCGCCCTTGTTTCCATGCTCTTAAGGTTGCCAAAAGTTAAATTTGTTATTGTGACATTGGGTAAAGATGGCTGCATAATGCTACAAAGGACTGAAATGG : ACAATCTCCTCCCTGAAGAAATGGATGTCGAAGTCCTGTTCAAAAAACTGAATCTGGAGAAAGACACTAATGCAACATTGCCTGCATGCATATCCTCG : AATGTAGCAAGACTACATGCAAAAGGGATAGGGACAATCACCGGTAAGCTACTTGTGGGGACAGCTGAAAGGATACCTGAAACAGAACTAATTGATACAACTGGAGCTGGAGATGCATTTATTG</gDNA_template>
            <first_frame> *  H  F  C  G  C  R  N  F  S  V  K  M  S  I  P  T  T  Q  S  S  I  L  L  P  E  D  R  I  I  :  L  G  C  G  A  V  S  V  D  F  L  A  A  V  A  S  Y  P  N  P  D  D  K  I  R  S  T  S  F  E  :  V  Q  G  G  G  N  T  G  N  A  L  T  C  A  A  R  L  G  L  T  P  R  I  I  S  K  :  V  A  D  D  S  Q  G  K  G  L  L  E  E  L  E  A  D  G  V  N  S  S  F  M  V  :  V  S  E  G  G  N  S  P  F  T  Y  I  I  V  D  N  Q  T :   K  T  R  T  C  I  H  T  P  G  Y  P  P  M  I  P  S  D  L  S  Q  S  N  L  L  S  A  L  D  G  A  K  L  V  H  F  D  G  R  L  H  E  T  A  A  I  V  A  E  E  :  A  N  R  R  G  I  P  I  L  I  D  A  E  R  K  R  E  G  L  D  Y  L  L  N  F  A  S  Y  V  V  C  S  T  K  F  P  Q  :  E  W  T  E  A  S  S  I  P  T  A  L  V  S  M  L  L  R  L  P  K  V  K  F  V  I  V  T  L  G  K  D  G  C  I  M  L  Q  R  T  E  M   : D  N  L  L  P  E  E  M  D  V  E  V  L  F  K  K  L  N  L  E  K  D  T  N  A  T  L  P  A  C  I  S  S  :  N  V  A  R  L  H  A  K  G  I  G  T  I  T  G  K  L  L  V  G  T  A  E  R  I  P  E  T  E  L  I  D  T  T  G  A  G  D  A  F  I  </first_frame>
            <second_frame>  D  I  F  V  G  A  E  I  S  V  *  K  C  Q  F  R  R  L  N  L  P  Y  C  S  L  K  I  E  S  Y :   *  V  V  G  L  C  Q  W  T  F  W  L  L  L  L  L  I  L  T  Q  M  I  R  F  E  A  Q  A  L  R :   F  K  E  V  E  I  L  G  M  L  *  L  V  Q  L  A  *  A  *  L  L  G  L  F  Q  R :   L  P  M  T  L  K  E  K  G  Y  W  R  N  *  K  L  M  V  *  I  R  L  L  W  W :   C  Q  K  G  E  I  H  R  L  P  T  S  L  L  T  T  K   : R  R  L  A  L  A  F  T  P  L  A  I  H  P  *  Y  P  L  I  F  P  N  Q  I  Y  C  R  P  W  M  V  L  N  L  S  I  S  M  G  D  C  M  K  L  L  L  L  *  Q  R  R :   Q  I  E  G  A  Y  P  F  *  L  T  L  R  G  K  G  K  D  W  I  I  F  *  T  L  Q  V  M  L  C  A  Q  P  N  F  L  R :   N  G  L  R  L  L  L  F  P  P  P  L  F  P  C  S  *  G  C  Q  K  L  N  L  L  L  *  H  W  V  K  M  A  A  *  C  Y  K  G  L  K  W  :  T  I  S  S  L  K  K  W  M  S  K  S  C  S  K  N  *  I  W  R  K  T  L  M  Q  H  C  L  H  A  Y  P  R :   M  *  Q  D  Y  M  Q  K  G  *  G  Q  S  P  V  S  Y  L  W  G  Q  L  K  G  Y  L  K  Q  N  *  L  I  Q  L  E  L  E  M  H  L  L </second_frame>
            <third_frame>   T  F  L  W  V  Q  K  F  Q  C  K  N  V  N  S  D  D  S  I  F  H  I  A  P  *  R  S  N  H   : I  R  L  W  G  C  V  S  G  L  F  G  C  C  C  F  L  S  *  P  R  *  *  D  S  K  H  K  L  *   : G  S  R  R  W  K  Y  W  E  C  F  D  L  C  S  S  P  R  L  N  S  *  D  Y  F  K   : G  C  R  *  L  S  R  K  R  V  T  G  G  T  R  S  *  W  C  K  F  V  F  Y  G   : G  V  R  R  G  K  F  T  V  Y  L  H  H  C  *  Q  P  N  :  E  D  S  H  L  H  S  H  P  W  L  S  T  H  D  T  L  *  S  F  P  I  K  F  I  V  G  L  G  W  C  *  T  C  P  F  R  W  E  I  A  *  N  C  C  Y  C  S  R  G   : G  K  *  K  G  H  T  H  F  N  *  R  *  E  E  K  G  R  I  G  L  S  F  K  L  C  K  L  C  C  V  L  N  Q  I  S  S   : G  M  D  *  G  F  F  Y  S  H  R  P  C  F  H  A  L  K  V  A  K  S  *  I  C  Y  C  D  I  G  *  R  W  L  H  N  A  T  K  D  *  N  G :   Q  S  P  P  *  R  N  G  C  R  S  P  V  Q  K  T  E  S  G  E  R  H  *  C  N  I  A  C  M  H  I  L   : E  C  S  K  T  T  C  K  R  D  R  D  N  H  R  *  A  T  C  G  D  S  *  K  D  T  *  N  R  T  N  *  Y  N  W  S  W  R  C  I  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0045A18.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30283" stop="30369"/>
                    <exon start="30461" stop="30550"/>
                    <exon start="30642" stop="30719"/>
                    <exon start="31364" stop="31438"/>
                    <exon start="31636" stop="31688"/>
                    <exon start="36576" stop="36726"/>
                    <exon start="36838" stop="36948"/>
                    <exon start="38578" stop="38704"/>
                    <exon start="38846" stop="38943"/>
                    <exon start="39265" stop="39387"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>993</number_coding_nucleotides>
                  <number_encoded_amino_acids>331</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HFCGCRNFSVKMSIPTTQSSILLPEDRIILGCGAVSVDFLAAVASYPNPDDKIRSTSFEVQGGGNTGNALTCAARLGLTPRIISKVADDSQGKGLLEELEADGVNSSFMVVSEGGNSPFTYIIVDNQTKTRTCIHTPGYPPMIPSDLSQSNLLSALDGAKLVHFDGRLHETAAIVAEEANRRGIPILIDAERKREGLDYLLNFASYVVCSTKFPQEWTEASSIPTALVSMLLRLPKVKFVIVTLGKDGCIMLQRTEMDNLLPEEMDVEVLFKKLNLEKDTNATLPACISSNVARLHAKGIGTITGKLLVGTAERIPETELIDTTGAGDAFI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="44727" PGL_stop="43993"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44727" e_stop="44346"/>
            <exon e_start="44252" e_stop="43993"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.902" acc_prob="1.000" e_score="0.984"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="44727" e_stop="44346" e_length="382"/>
          </exon>
          <intron i_serial="1" don_prob="0.902" acc_prob="1.000">
            <gDNA_intron_boundary i_start="44345" i_stop="44253" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="44252" e_stop="43993" e_length="260"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44727" stop="44346"/>
              <exon start="44252" stop="43993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315270" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCTGCTGATCTTCCTTATCGGACGATTGAAGTGAATGTTTTTAACGAGAAAAGGTCAAACACAAGCAGAAATTTTCTGGGTCGAGCTCGGGTTTCTGGGTCAAGCATTGCTAAAGAAGGGGAAGAAATAGCGCAGCTTTATACACTTGATAAAAGGAGTCTTTTTTCTCATGTACGCGGTGAGTTGAGTTTGAAGATTTATTTATCAACAACAGAGCAAGTGAAACAAGTTATAACTGATAATGGTAATGCTGGTGGTGGTGGTGGAGGGGTGGTGTCTTCTGGTGCACCAAATGCTAAGAAAAACAAGAAATTGCAGCAGAAGCAGCAGCAACAGACAAATGGAACAAACATGGTGGTTCAAATGGGTCAAGAAAATAAG : GTAAACTTTCAAAACCAGAACCATTCAAAGCCAGTGGAGTCAGTTCCAGGTGATATTAAGCCTGTTGTTATTACTAGTGTTCCTGGACCTATTATTCCGGCTGTGACTGGTGGTGGTGGGGTTGGTCTGTACACTTCTGGGCAAGGTGAGTTTTCTCTGAAAGAAACAAGTCCACATCTTGGTGGTAAGGACAAGACTAACTCAACATATGACTTGGTGGAACAAATGCAGTATTTGTATGTTAGAGTTGTTAAGGCTAA</gDNA_template>
            <first_frame> C  C  *  S  S  L  S  D  D  *  S  E  C  F  *  R  E  K  V  K  H  K  Q  K  F  S  G  S  S  S  G  F  W  V  K  H  C  *  R  R  G  R  N  S  A  A  L  Y  T  *  *  K  E  S  F  F  S  C  T  R  *  V  E  F  E  D  L  F  I  N  N  R  A  S  E  T  S  Y  N  *  *  W  *  C  W  W  W  W  W  R  G  G  V  F  W  C  T  K  C  *  E  K  Q  E  I  A  A  E  A  A  A  T  D  K  W  N  K  H  G  G  S  N  G  S  R  K  *   : G  K  L  S  K  P  E  P  F  K  A  S  G  V  S  S  R  *  Y  *  A  C  C  Y  Y  *  C  S  W  T  Y  Y  S  G  C  D  W  W  W  W  G  W  S  V  H  F  W  A  R  *  V  F  S  E  R  N  K  S  T  S  W  W  *  G  Q  D  *  L  N  I  *  L  G  G  T  N  A  V  F  V  C  *  S  C  *  G  * </first_frame>
            <second_frame>  A  A  D  L  P  Y  R  T  I  E  V  N  V  F  N  E  K  R  S  N  T  S  R  N  F  L  G  R  A  R  V  S  G  S  S  I  A  K  E  G  E  E  I  A  Q  L  Y  T  L  D  K  R  S  L  F  S  H  V  R  G  E  L  S  L  K  I  Y  L  S  T  T  E  Q  V  K  Q  V  I  T  D  N  G  N  A  G  G  G  G  G  G  V  V  S  S  G  A  P  N  A  K  K  N  K  K  L  Q  Q  K  Q  Q  Q  Q  T  N  G  T  N  M  V  V  Q  M  G  Q  E  N  K  :  V  N  F  Q  N  Q  N  H  S  K  P  V  E  S  V  P  G  D  I  K  P  V  V  I  T  S  V  P  G  P  I  I  P  A  V  T  G  G  G  G  V  G  L  Y  T  S  G  Q  G  E  F  S  L  K  E  T  S  P  H  L  G  G  K  D  K  T  N  S  T  Y  D  L  V  E  Q  M  Q  Y  L  Y  V  R  V  V  K  A   </second_frame>
            <third_frame>   L  L  I  F  L  I  G  R  L  K  *  M  F  L  T  R  K  G  Q  T  Q  A  E  I  F  W  V  E  L  G  F  L  G  Q  A  L  L  K  K  G  K  K  *  R  S  F  I  H  L  I  K  G  V  F  F  L  M  Y  A  V  S  *  V  *  R  F  I  Y  Q  Q  Q  S  K  *  N  K  L  *  L  I  M  V  M  L  V  V  V  V  E  G  W  C  L  L  V  H  Q  M  L  R  K  T  R  N  C  S  R  S  S  S  N  R  Q  M  E  Q  T  W  W  F  K  W  V  K  K  I  R :   *  T  F  K  T  R  T  I  Q  S  Q  W  S  Q  F  Q  V  I  L  S  L  L  L  L  L  V  F  L  D  L  L  F  R  L  *  L  V  V  V  G  L  V  C  T  L  L  G  K  V  S  F  L  *  K  K  Q  V  H  I  L  V  V  R  T  R  L  T  Q  H  M  T  W  W  N  K  C  S  I  C  M  L  E  L  L  R  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0045A18.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44726" stop="44346"/>
                    <exon start="44252" stop="43995"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>639</number_coding_nucleotides>
                  <number_encoded_amino_acids>213</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AADLPYRTIEVNVFNEKRSNTSRNFLGRARVSGSSIAKEGEEIAQLYTLDKRSLFSHVRGELSLKIYLSTTEQVKQVITDNGNAGGGGGGVVSSGAPNAKKNKKLQQKQQQQTNGTNMVVQMGQENKVNFQNQNHSKPVESVPGDIKPVVITSVPGPIIPAVTGGGGVGLYTSGQGEFSLKETSPHLGGKDKTNSTYDLVEQMQYLYVRVVKA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="47766" PGL_stop="46786"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47766" e_stop="47427"/>
            <exon e_start="47019" e_stop="46786"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.938"/>
          <exon-only e_score="0.897"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="47766" e_stop="47427" e_length="340"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="47426" i_stop="47020" i_length="407"/>
          </intron>
          <exon e_serial="2" e_score="0.897">
            <gDNA_exon_boundary e_start="47019" e_stop="46786" e_length="234"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47766" stop="47427"/>
              <exon start="47019" stop="46786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238124" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGAATTAAGACTTAAGAGTACCATCCATAAGCAATGTAAATTTTAAAACGTAATTTCTCAAACTCTTTTTTTTTTTCATTAACTAACTTTAATCAATCATCAAATTTTATTACCTTACTTTTCTATTCTGATTTTGAAAAGAAAATATGTTGAAGTTTGTTGTTGGGCAGTTACGCTGATGGTTTTCTCTTTGAAACAAGAAGAAGAAGAAGAATGAATGACTTCATAGTTTGCTAAGAGAAATAATCCCATAAAAGTGGGCAGTGCAAAAGGTTTTAAAGCATAAGAAAAGTTAAAAATAAAAAAGAAAGAAAAATTATGCTACCTAAACTAATTAAG : AATAGGAAAAGTCAAAACAAGCAAGAATATGAAAAGTCAAAACTAGTACAAAATTGGCAGTTAAATAAACCCTTAATTACAAAAAGGAAAAATAAAAAATTAAAAAAAGTTGTAAAATTTGTTGGAATTAATTTTTTTTTTTAAAAAGAAGAGTTAAATAAGCCCTTAATTAGAAAAAAGGATTTTTTAATAAAAAAAACAGGTGTAAAATTCGCTGGAAAATTTTTTAAAAAA</gDNA_template>
            <first_frame> Q  N  *  D  L  R  V  P  S  I  S  N  V  N  F  K  T  *  F  L  K  L  F  F  F  F  I  N  *  L  *  S  I  I  K  F  Y  Y  L  T  F  L  F  *  F  *  K  E  N  M  L  K  F  V  V  G  Q  L  R  *  W  F  S  L  *  N  K  K  K  K  K  N  E  *  L  H  S  L  L  R  E  I  I  P  *  K  W  A  V  Q  K  V  L  K  H  K  K  S  *  K  *  K  R  K  K  N  Y  A  T  *  T  N  *   : E  *  E  K  S  K  Q  A  R  I  *  K  V  K  T  S  T  K  L  A  V  K  *  T  L  N  Y  K  K  E  K  *  K  I  K  K  S  C  K  I  C  W  N  *  F  F  F  L  K  R  R  V  K  *  A  L  N  *  K  K  G  F  F  N  K  K  N  R  C  K  I  R  W  K  I  F  *  K  </first_frame>
            <second_frame>  R  I  K  T  *  E  Y  H  P  *  A  M  *  I  L  K  R  N  F  S  N  S  F  F  F  S  L  T  N  F  N  Q  S  S  N  F  I  T  L  L  F  Y  S  D  F  E  K  K  I  C  *  S  L  L  L  G  S  Y  A  D  G  F  L  F  E  T  R  R  R  R  R  M  N  D  F  I  V  C  *  E  K  *  S  H  K  S  G  Q  C  K  R  F  *  S  I  R  K  V  K  N  K  K  E  R  K  I  M  L  P  K  L  I  K  :  N  R  K  S  Q  N  K  Q  E  Y  E  K  S  K  L  V  Q  N  W  Q  L  N  K  P  L  I  T  K  R  K  N  K  K  L  K  K  V  V  K  F  V  G  I  N  F  F  F  *  K  E  E  L  N  K  P  L  I  R  K  K  D  F  L  I  K  K  T  G  V  K  F  A  G  K  F  F  K  K </second_frame>
            <third_frame>   E  L  R  L  K  S  T  I  H  K  Q  C  K  F  *  N  V  I  S  Q  T  L  F  F  F  H  *  L  T  L  I  N  H  Q  I  L  L  P  Y  F  S  I  L  I  L  K  R  K  Y  V  E  V  C  C  W  A  V  T  L  M  V  F  S  L  K  Q  E  E  E  E  E  *  M  T  S  *  F  A  K  R  N  N  P  I  K  V  G  S  A  K  G  F  K  A  *  E  K  L  K  I  K  K  K  E  K  L  C  Y  L  N  *  L  R :   I  G  K  V  K  T  S  K  N  M  K  S  Q  N  *  Y  K  I  G  S  *  I  N  P  *  L  Q  K  G  K  I  K  N  *  K  K  L  *  N  L  L  E  L  I  F  F  F  K  K  K  S  *  I  S  P  *  L  E  K  R  I  F  *  *  K  K  Q  V  *  N  S  L  E  N  F  L  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0045A18.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47486" stop="47427"/>
                    <exon start="47019" stop="46876"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIRKVKNKKERKIMLPKLIKNRKSQNKQEYEKSKLVQNWQLNKPLITKRKNKKLKKVVKFVGINFFF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="53218" PGL_stop="52629"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53218" e_stop="52629"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="53218" e_stop="52629" e_length="590"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53218" stop="52629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351864" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTGCGAAGGTGTTTCTCCCTGTATCATACTTCCTAGTACTCCAAGCTTTGTTATTCCGGGAGATTTTCTCTAATTTTTCAGCGATCTCAGCATAAGGGCATTCTCCATAAGATCCACCTGCTATAGTGTCCAACACCGCTTTGTTGTTATCATCCTGTCCCCGATAGAAGTATTCCTTCAGTGACTCATCATCTATACGGTGATTTGGAACACTTCTCAAGAATGAGGTGAATCTATCCCAAGAACTACTAACTGACTCTCCTGGTAGTGCCACAAAGTTGTTCACTCTTTCTTTGTGGTTTAGTTTCTTGGAGACCGGATAGTAGCGTGCTAAAAAGACATCTCTTAATTGGTTCCAAGTGAAGATTGAGTTGTATGGGAGCTCAGTGAACCACATAGCAGCCTCTCCCGTCAGTGAGAGAGGAAACACTCTGAGCCCTATTACATCTAGATCCAAAACAGGCCTTCCCACACAACTTTTACACACTGCCCTTACCTTAGCTATATGGGCATGTGGATCCTCAGAAGGTAGCCCTGAAAACAAACCTCTGGCAGTGAGCATTTGCATCAGGCTACTAGTTACCACAAA</gDNA_template>
            <first_frame> T  A  K  V  F  L  P  V  S  Y  F  L  V  L  Q  A  L  L  F  R  E  I  F  S  N  F  S  A  I  S  A  *  G  H  S  P  *  D  P  P  A  I  V  S  N  T  A  L  L  L  S  S  C  P  R  *  K  Y  S  F  S  D  S  S  S  I  R  *  F  G  T  L  L  K  N  E  V  N  L  S  Q  E  L  L  T  D  S  P  G  S  A  T  K  L  F  T  L  S  L  W  F  S  F  L  E  T  G  *  *  R  A  K  K  T  S  L  N  W  F  Q  V  K  I  E  L  Y  G  S  S  V  N  H  I  A  A  S  P  V  S  E  R  G  N  T  L  S  P  I  T  S  R  S  K  T  G  L  P  T  Q  L  L  H  T  A  L  T  L  A  I  W  A  C  G  S  S  E  G  S  P  E  N  K  P  L  A  V  S  I  C  I  R  L  L  V  T  T   </first_frame>
            <second_frame>  L  R  R  C  F  S  L  Y  H  T  S  *  Y  S  K  L  C  Y  S  G  R  F  S  L  I  F  Q  R  S  Q  H  K  G  I  L  H  K  I  H  L  L  *  C  P  T  P  L  C  C  Y  H  P  V  P  D  R  S  I  P  S  V  T  H  H  L  Y  G  D  L  E  H  F  S  R  M  R  *  I  Y  P  K  N  Y  *  L  T  L  L  V  V  P  Q  S  C  S  L  F  L  C  G  L  V  S  W  R  P  D  S  S  V  L  K  R  H  L  L  I  G  S  K  *  R  L  S  C  M  G  A  Q  *  T  T  *  Q  P  L  P  S  V  R  E  E  T  L  *  A  L  L  H  L  D  P  K  Q  A  F  P  H  N  F  Y  T  L  P  L  P  *  L  Y  G  H  V  D  P  Q  K  V  A  L  K  T  N  L  W  Q  *  A  F  A  S  G  Y  *  L  P  Q  </second_frame>
            <third_frame>   C  E  G  V  S  P  C  I  I  L  P  S  T  P  S  F  V  I  P  G  D  F  L  *  F  F  S  D  L  S  I  R  A  F  S  I  R  S  T  C  Y  S  V  Q  H  R  F  V  V  I  I  L  S  P  I  E  V  F  L  Q  *  L  I  I  Y  T  V  I  W  N  T  S  Q  E  *  G  E  S  I  P  R  T  T  N  *  L  S  W  *  C  H  K  V  V  H  S  F  F  V  V  *  F  L  G  D  R  I  V  A  C  *  K  D  I  S  *  L  V  P  S  E  D  *  V  V  W  E  L  S  E  P  H  S  S  L  S  R  Q  *  E  R  K  H  S  E  P  Y  Y  I  *  I  Q  N  R  P  S  H  T  T  F  T  H  C  P  Y  L  S  Y  M  G  M  W  I  L  R  R  *  P  *  K  Q  T  S  G  S  E  H  L  H  Q  A  T  S  Y  H  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0045A18.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52891" stop="52631"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RAKKTSLNWFQVKIELYGSSVNHIAASPVSERGNTLSPITSRSKTGLPTQLLHTALTLAIWACGSSEGSPENKPLAVSICIRLLVTT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="60378" PGL_stop="59530"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60378" e_stop="59530"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="60378" e_stop="59530" e_length="849"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60378" stop="59864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60245" stop="59530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578039" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGCGACGGACCGTCGTGGTTACAATGGACCGTCATGGACTCCGTCGTCCCATACTTGTGCAATTTCTTCTGCTGCTCTCTTCATTCCTCTCGACTGCAGGTATGACGGACCTTCATAAGCACAACGGTCCGTCGAGGGTCTTCGTTCTAAAACACTTCAACTCTTGGAATCTGGGTACTGGGATCACTTCTTTGAACTTCACGATGAACTTGCAGGACGGGCTGTCATAGCCATGACGGACCGTCACAAGCTTCGTAATCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGTTGCACTACGCTGCCACCTACGGACCGTCACAAGCACGACGGACCGTCATATGCTCCGTAGGTGGTCTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCAGCTTTTGACAGATTTCCTGCAAAACAAAGAGAAACTTATATAAAAATTAGCGCAAAAATTCTTTTGGACACACTAAACTTAAGGAAAAAGTATTAATAATTCCATGAAACCACGGTATATCAACACCCTCAACTTAAATTCGTTGTTTGTCCTCAAGCGACGCACTATGACTCACTACACAATCTTTGTACAATAGTATCCATGTTTTATCCTTTGCAATCATTTGGCTATCAATCCCGATTAATCCCATCAAATCTATGCATGCTATCACTATTAGGCTTGAATTTTGTGGGATCAGAACATGACACAGACTCACCACGCACTAACACCTATCCTCTTCAATTTCTCACCGGGGTGCTAACAATTCTGGTATTGCAACTAGTGTCCTCACTTTAAAACAAAATCCTCTTTTTTCACACAATGATTTCAGTTTGAGTATAAGGATTAC</gDNA_template>
            <first_frame> L  R  R  T  V  V  V  T  M  D  R  H  G  L  R  R  P  I  L  V  Q  F  L  L  L  L  S  S  F  L  S  T  A  G  M  T  D  L  H  K  H  N  G  P  S  R  V  F  V  L  K  H  F  N  S  W  N  L  G  T  G  I  T  S  L  N  F  T  M  N  L  Q  D  G  L  S  *  P  *  R  T  V  T  S  F  V  I  P  H  L  V  R  L  P  H  L  P  S  A  V  A  L  R  C  H  L  R  T  V  T  S  T  T  D  R  H  M  L  R  R  W  S  L  L  H  F  F  A  Q  N  L  R  I  Q  L  L  T  D  F  L  Q  N  K  E  K  L  I  *  K  L  A  Q  K  F  F  W  T  H  *  T  *  G  K  S  I  N  N  S  M  K  P  R  Y  I  N  T  L  N  L  N  S  L  F  V  L  K  R  R  T  M  T  H  Y  T  I  F  V  Q  *  Y  P  C  F  I  L  C  N  H  L  A  I  N  P  D  *  S  H  Q  I  Y  A  C  Y  H  Y  *  A  *  I  L  W  D  Q  N  M  T  Q  T  H  H  A  L  T  P  I  L  F  N  F  S  P  G  C  *  Q  F  W  Y  C  N  *  C  P  H  F  K  T  K  S  S  F  F  T  Q  *  F  Q  F  E  Y  K  D  Y </first_frame>
            <second_frame>  C  D  G  P  S  W  L  Q  W  T  V  M  D  S  V  V  P  Y  L  C  N  F  F  C  C  S  L  H  S  S  R  L  Q  V  *  R  T  F  I  S  T  T  V  R  R  G  S  S  F  *  N  T  S  T  L  G  I  W  V  L  G  S  L  L  *  T  S  R  *  T  C  R  T  G  C  H  S  H  D  G  P  S  Q  A  S  *  S  H  T  W  S  D  F  P  I  F  L  Q  Q  L  H  Y  A  A  T  Y  G  P  S  Q  A  R  R  T  V  I  C  S  V  G  G  L  F  C  I  S  S  L  K  I  S  A  F  S  F  *  Q  I  S  C  K  T  K  R  N  L  Y  K  N  *  R  K  N  S  F  G  H  T  K  L  K  E  K  V  L  I  I  P  *  N  H  G  I  S  T  P  S  T  *  I  R  C  L  S  S  S  D  A  L  *  L  T  T  Q  S  L  Y  N  S  I  H  V  L  S  F  A  I  I  W  L  S  I  P  I  N  P  I  K  S  M  H  A  I  T  I  R  L  E  F  C  G  I  R  T  *  H  R  L  T  T  H  *  H  L  S  S  S  I  S  H  R  G  A  N  N  S  G  I  A  T  S  V  L  T  L  K  Q  N  P  L  F  S  H  N  D  F  S  L  S  I  R  I   </second_frame>
            <third_frame>   A  T  D  R  R  G  Y  N  G  P  S  W  T  P  S  S  H  T  C  A  I  S  S  A  A  L  F  I  P  L  D  C  R  Y  D  G  P  S  *  A  Q  R  S  V  E  G  L  R  S  K  T  L  Q  L  L  E  S  G  Y  W  D  H  F  F  E  L  H  D  E  L  A  G  R  A  V  I  A  M  T  D  R  H  K  L  R  N  P  T  L  G  Q  T  S  P  S  S  F  S  S  C  T  T  L  P  P  T  D  R  H  K  H  D  G  P  S  Y  A  P  *  V  V  S  S  A  F  L  R  S  K  S  P  H  S  A  F  D  R  F  P  A  K  Q  R  E  T  Y  I  K  I  S  A  K  I  L  L  D  T  L  N  L  R  K  K  Y  *  *  F  H  E  T  T  V  Y  Q  H  P  Q  L  K  F  V  V  C  P  Q  A  T  H  Y  D  S  L  H  N  L  C  T  I  V  S  M  F  Y  P  L  Q  S  F  G  Y  Q  S  R  L  I  P  S  N  L  C  M  L  S  L  L  G  L  N  F  V  G  S  E  H  D  T  D  S  P  R  T  N  T  Y  P  L  Q  F  L  T  G  V  L  T  I  L  V  L  Q  L  V  S  S  L  *  N  K  I  L  F  F  H  T  M  I  S  V  *  V  *  G  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0045A18.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59878" stop="59582"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FHETTVYQHPQLKFVVCPQATHYDSLHNLCTIVSMFYPLQSFGYQSRLIPSNLCMLSLLGLNFVGSEHDTDSPRTNTYPLQFLTGVLTILVLQLVSSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0045A18.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60259" stop="60020"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AQRSVEGLRSKTLQLLESGYWDHFFELHDELAGRAVIAMTDRHKLRNPTLGQTSPSSFSSCTTLPPTDRHKHDGPSYAP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0045A18.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60378" stop="60148"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRRTVVVTMDRHGLRRPILVQFLLLLSSFLSTAGMTDLHKHNGPSRVFVLKHFNSWNLGTGITSLNFTMNLQDGLS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0045A18.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60141" stop="59935"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTVTSFVIPHLVRLPHLPSAVALRCHLRTVTSTTDRHMLRRWSLLHFFAQNLRIQLLTDFLQNKEKLI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="69487" PGL_stop="68238"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69487" e_stop="69247"/>
            <exon e_start="68467" e_stop="68238"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="0.979"/>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="69487" e_stop="69247" e_length="241"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="69246" i_stop="68468" i_length="779"/>
          </intron>
          <exon e_serial="2" e_score="0.965">
            <gDNA_exon_boundary e_start="68467" e_stop="68238" e_length="230"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69487" stop="69247"/>
              <exon start="68467" stop="68238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E399718" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAAGACAGGATAAAAGGGCCACTTGATTGGGACGTGAGGTTAAAAATTGCTCTTGGTGCTGCAAGGGGACTTGCTTACCTTCATGAAGATTCTAATCCTCGTGTTATTCATCGTGATTTCAAAGCCAGCAATGTTTTGTTAGAAGAGGACTTCACCCCTAAGGTTTCAGATTTTGGGTTAGCAAGGGAAGCAACCGAAGGAAGTGACCACGTATCCACTCGAGTCATGGGAACTTTTGG : GTACGTTGCTCCTGAATATGCAATGACGGGACACCTCCTTGTTAAAAGTGATGTGTATAGTTATGGGGTTGTGTTACTGGAGCTTCTCTCTGGAAGAAAACCTGTGGATATGTCTCAACCTCCTGGACAAGAAAACCTGGTAACTTGGGCACGGCCTCTTCTGACCACTAGAGAAGGTTTGGAGCAACTTGTGGATCCTTCTTTGGCTGGAACCTATGACTTTGATGATA</gDNA_template>
            <first_frame> E  K  T  G  *  K  G  H  L  I  G  T  *  G  *  K  L  L  L  V  L  Q  G  D  L  L  T  F  M  K  I  L  I  L  V  L  F  I  V  I  S  K  P  A  M  F  C  *  K  R  T  S  P  L  R  F  Q  I  L  G  *  Q  G  K  Q  P  K  E  V  T  T  Y  P  L  E  S  W  E  L  L   : G  T  L  L  L  N  M  Q  *  R  D  T  S  L  L  K  V  M  C  I  V  M  G  L  C  Y  W  S  F  S  L  E  E  N  L  W  I  C  L  N  L  L  D  K  K  T  W  *  L  G  H  G  L  F  *  P  L  E  K  V  W  S  N  L  W  I  L  L  W  L  E  P  M  T  L  M  I </first_frame>
            <second_frame>  K  R  Q  D  K  R  A  T  *  L  G  R  E  V  K  N  C  S  W  C  C  K  G  T  C  L  P  S  *  R  F  *  S  S  C  Y  S  S  *  F  Q  S  Q  Q  C  F  V  R  R  G  L  H  P  *  G  F  R  F  W  V  S  K  G  S  N  R  R  K  *  P  R  I  H  S  S  H  G  N  F  W  :  V  R  C  S  *  I  C  N  D  G  T  P  P  C  *  K  *  C  V  *  L  W  G  C  V  T  G  A  S  L  W  K  K  T  C  G  Y  V  S  T  S  W  T  R  K  P  G  N  L  G  T  A  S  S  D  H  *  R  R  F  G  A  T  C  G  S  F  F  G  W  N  L  *  L  *  *   </second_frame>
            <third_frame>   K  D  R  I  K  G  P  L  D  W  D  V  R  L  K  I  A  L  G  A  A  R  G  L  A  Y  L  H  E  D  S  N  P  R  V  I  H  R  D  F  K  A  S  N  V  L  L  E  E  D  F  T  P  K  V  S  D  F  G  L  A  R  E  A  T  E  G  S  D  H  V  S  T  R  V  M  G  T  F  G :   Y  V  A  P  E  Y  A  M  T  G  H  L  L  V  K  S  D  V  Y  S  Y  G  V  V  L  L  E  L  L  S  G  R  K  P  V  D  M  S  Q  P  P  G  Q  E  N  L  V  T  W  A  R  P  L  L  T  T  R  E  G  L  E  Q  L  V  D  P  S  L  A  G  T  Y  D  F  D  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0045A18.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69485" stop="69247"/>
                    <exon start="68467" stop="68239"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDRIKGPLDWDVRLKIALGAARGLAYLHEDSNPRVIHRDFKASNVLLEEDFTPKVSDFGLAREATEGSDHVSTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLSGRKPVDMSQPPGQENLVTWARPLLTTREGLEQLVDPSLAGTYDFDD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="78341" PGL_stop="71255"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78341" e_stop="77984"/>
            <exon e_start="77382" e_stop="77299"/>
            <exon e_start="77156" e_stop="77043"/>
            <exon e_start="76966" e_stop="76865"/>
            <exon e_start="71618" e_stop="71255"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.975" e_score="0.941"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="0.976"/>
          <exon-intron don_prob="0.987" acc_prob="0.703" e_score="0.974"/>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="78341" e_stop="77984" e_length="358"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.975">
            <gDNA_intron_boundary i_start="77983" i_stop="77383" i_length="601"/>
          </intron>
          <exon e_serial="2" e_score="0.976">
            <gDNA_exon_boundary e_start="77382" e_stop="77299" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="77298" i_stop="77157" i_length="142"/>
          </intron>
          <exon e_serial="3" e_score="0.974">
            <gDNA_exon_boundary e_start="77156" e_stop="77043" e_length="114"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.703">
            <gDNA_intron_boundary i_start="77042" i_stop="76967" i_length="76"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="76966" e_stop="76865" e_length="102"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="76864" i_stop="71619" i_length="5246"/>
          </intron>
          <exon e_serial="5" e_score="0.995">
            <gDNA_exon_boundary e_start="71618" e_stop="71255" e_length="364"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78341" stop="77984"/>
              <exon start="77382" stop="77299"/>
              <exon start="77156" stop="77043"/>
              <exon start="76966" stop="76891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78341" stop="77984"/>
              <exon start="77382" stop="77299"/>
              <exon start="77156" stop="77082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78310" stop="77984"/>
              <exon start="77382" stop="77299"/>
              <exon start="77156" stop="77043"/>
              <exon start="76966" stop="76865"/>
              <exon start="71618" stop="71564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76963" stop="76865"/>
              <exon start="71618" stop="71255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365327" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGAATTCGTGGCGGAGATCCATCATTTGTCGTTTGTAAAAAACTTGGTTCTTTGTGCAGCAGTGGTGGTACTTGTTTGAGGCATTGCCGGATTTTATGGATCTGTGAAGTAGGGAATTTGATTGATTGATTGGGGAGCTGCATTTTGTTGTTAGAGATGCAGTATTCGGATGTTAGTGAAGGAAGTTTAGTTGATGGAGGGTTTTTTTGTTTTTAGTTTGAGTAGAACCCTAGAGAAGAATGCTTTGATACTACTGAGGATGGTGTTTGGGAATTGCCCATTTGAGAGAGAAGATGCCAACTTTGATGCTTCTCTTTCTTCTTTCTTTACTCACTCTGCTTACTACTACTACTCTAG : GGATAACATTGCCACACATTTACCTGTCTCCTACTCTACCGCCAAACAAGCCTTACTTTGCAAGCAAACTTTTTTTAGGAGATG : CAAGATTAGTGTCAACTCATGTCTCATTTGCTCCAATATCAGCACCGCATAGACACCATTTTAAACCACATATGATTCCCTCTAGGGCGCCTGCTCCTTCCCCTGCATCTCAAG : GCCTTGCTGCTGCTCCAATTGCCAGTCGAGTGGTTGGACATCACCGTCATCGTCATAATCGGCCGAGAGCCCGTGTTTCCCCATCTCCTGCAGTGGGCTCAG : GTTGTGGCGAGGTCTGTGCAGAGCCATTTGCTTCTGTTCCTTTTGTTACACCTTGCACGTGTGTGTTTCCAATGAAAGTTAGACTTCTCTTAGACAAGTCGCTTTATTCTATATTTCCTGTGGTTAGAGATCTGGGTATTGAGGTTGCAAAAGGAACCTATCTACGTCCAAGTCAAGTTGTTGTAGTTGGAGCTAGTGCTGATAATCAAAATCAAGAAAGAACAATTGTTGATATTAACTTGGTTCCCCTGGAGGATAAGTTTGATAACACCACAGCTATGCTGATCTATGAAAGATTCTGGAAAAAGAAGATGCCTCTCAATAGAACGATGTTTGGGGATTATGATGTGATGCATATTATGTA</gDNA_template>
            <first_frame> L  N  S  W  R  R  S  I  I  C  R  L  *  K  T  W  F  F  V  Q  Q  W  W  Y  L  F  E  A  L  P  D  F  M  D  L  *  S  R  E  F  D  *  L  I  G  E  L  H  F  V  V  R  D  A  V  F  G  C  *  *  R  K  F  S  *  W  R  V  F  L  F  L  V  *  V  E  P  *  R  R  M  L  *  Y  Y  *  G  W  C  L  G  I  A  H  L  R  E  K  M  P  T  L  M  L  L  F  L  L  S  L  L  T  L  L  T  T  T  T  L   : G  I  T  L  P  H  I  Y  L  S  P  T  L  P  P  N  K  P  Y  F  A  S  K  L  F  L  G  D   : A  R  L  V  S  T  H  V  S  F  A  P  I  S  A  P  H  R  H  H  F  K  P  H  M  I  P  S  R  A  P  A  P  S  P  A  S  Q   : G  L  A  A  A  P  I  A  S  R  V  V  G  H  H  R  H  R  H  N  R  P  R  A  R  V  S  P  S  P  A  V  G  S   : G  C  G  E  V  C  A  E  P  F  A  S  V  P  F  V  T  P  C  T  C  V  F  P  M  K  V  R  L  L  L  D  K  S  L  Y  S  I  F  P  V  V  R  D  L  G  I  E  V  A  K  G  T  Y  L  R  P  S  Q  V  V  V  V  G  A  S  A  D  N  Q  N  Q  E  R  T  I  V  D  I  N  L  V  P  L  E  D  K  F  D  N  T  T  A  M  L  I  Y  E  R  F  W  K  K  K  M  P  L  N  R  T  M  F  G  D  Y  D  V  M  H  I  M   </first_frame>
            <second_frame>  *  I  R  G  G  D  P  S  F  V  V  C  K  K  L  G  S  L  C  S  S  G  G  T  C  L  R  H  C  R  I  L  W  I  C  E  V  G  N  L  I  D  *  L  G  S  C  I  L  L  L  E  M  Q  Y  S  D  V  S  E  G  S  L  V  D  G  G  F  F  C  F  *  F  E  *  N  P  R  E  E  C  F  D  T  T  E  D  G  V  W  E  L  P  I  *  E  R  R  C  Q  L  *  C  F  S  F  F  F  L  Y  S  L  C  L  L  L  L  L  *  :  G  *  H  C  H  T  F  T  C  L  L  L  Y  R  Q  T  S  L  T  L  Q  A  N  F  F  *  E  M  :  Q  D  *  C  Q  L  M  S  H  L  L  Q  Y  Q  H  R  I  D  T  I  L  N  H  I  *  F  P  L  G  R  L  L  L  P  L  H  L  K  :  A  L  L  L  L  Q  L  P  V  E  W  L  D  I  T  V  I  V  I  I  G  R  E  P  V  F  P  H  L  L  Q  W  A  Q  :  V  V  A  R  S  V  Q  S  H  L  L  L  F  L  L  L  H  L  A  R  V  C  F  Q  *  K  L  D  F  S  *  T  S  R  F  I  L  Y  F  L  W  L  E  I  W  V  L  R  L  Q  K  E  P  I  Y  V  Q  V  K  L  L  *  L  E  L  V  L  I  I  K  I  K  K  E  Q  L  L  I  L  T  W  F  P  W  R  I  S  L  I  T  P  Q  L  C  *  S  M  K  D  S  G  K  R  R  C  L  S  I  E  R  C  L  G  I  M  M  *  C  I  L  C  </second_frame>
            <third_frame>   E  F  V  A  E  I  H  H  L  S  F  V  K  N  L  V  L  C  A  A  V  V  V  L  V  *  G  I  A  G  F  Y  G  S  V  K  *  G  I  *  L  I  D  W  G  A  A  F  C  C  *  R  C  S  I  R  M  L  V  K  E  V  *  L  M  E  G  F  F  V  F  S  L  S  R  T  L  E  K  N  A  L  I  L  L  R  M  V  F  G  N  C  P  F  E  R  E  D  A  N  F  D  A  S  L  S  S  F  F  T  H  S  A  Y  Y  Y  Y  S  R :   D  N  I  A  T  H  L  P  V  S  Y  S  T  A  K  Q  A  L  L  C  K  Q  T  F  F  R  R  C :   K  I  S  V  N  S  C  L  I  C  S  N  I  S  T  A  *  T  P  F  *  T  T  Y  D  S  L  *  G  A  C  S  F  P  C  I  S  R :   P  C  C  C  S  N  C  Q  S  S  G  W  T  S  P  S  S  S  *  S  A  E  S  P  C  F  P  I  S  C  S  G  L  R :   L  W  R  G  L  C  R  A  I  C  F  C  S  F  C  Y  T  L  H  V  C  V  S  N  E  S  *  T  S  L  R  Q  V  A  L  F  Y  I  S  C  G  *  R  S  G  Y  *  G  C  K  R  N  L  S  T  S  K  S  S  C  C  S  W  S  *  C  *  *  S  K  S  R  K  N  N  C  *  Y  *  L  G  S  P  G  G  *  V  *  *  H  H  S  Y  A  D  L  *  K  I  L  E  K  E  D  A  S  Q  *  N  D  V  W  G  L  *  C  D  A  Y  Y  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0045A18.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78083" stop="77984"/>
                    <exon start="77382" stop="77299"/>
                    <exon start="77156" stop="77043"/>
                    <exon start="76966" stop="76865"/>
                    <exon start="71618" stop="71257"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>762</number_coding_nucleotides>
                  <number_encoded_amino_acids>254</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GWCLGIAHLREKMPTLMLLFLLSLLTLLTTTTLGITLPHIYLSPTLPPNKPYFASKLFLGDARLVSTHVSFAPISAPHRHHFKPHMIPSRAPAPSPASQGLAAAPIASRVVGHHRHRHNRPRARVSPSPAVGSGCGEVCAEPFASVPFVTPCTCVFPMKVRLLLDKSLYSIFPVVRDLGIEVAKGTYLRPSQVVVVGASADNQNQERTIVDINLVPLEDKFDNTTAMLIYERFWKKKMPLNRTMFGDYDVMHIM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="80723" PGL_stop="84443"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80723" e_stop="80758"/>
            <exon e_start="83024" e_stop="83407"/>
            <exon e_start="83519" e_stop="84339"/>
            <exon e_start="84431" e_stop="84443"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="1.000" e_score="0.944"/>
          <exon-intron don_prob="0.988" acc_prob="0.992" e_score="0.984"/>
          <exon-intron don_prob="0.000" acc_prob="0.939" e_score="0.970"/>
          <exon-only e_score="0.538"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="80723" e_stop="80758" e_length="36"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="1.000">
            <gDNA_intron_boundary i_start="80759" i_stop="83023" i_length="2265"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="83024" e_stop="83407" e_length="384"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.992">
            <gDNA_intron_boundary i_start="83408" i_stop="83518" i_length="111"/>
          </intron>
          <exon e_serial="3" e_score="0.970">
            <gDNA_exon_boundary e_start="83519" e_stop="84339" e_length="821"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.939">
            <gDNA_intron_boundary i_start="84340" i_stop="84430" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="0.538">
            <gDNA_exon_boundary e_start="84431" e_stop="84443" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80723" stop="80758"/>
              <exon start="83024" stop="83407"/>
              <exon start="83519" stop="83605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83024" stop="83407"/>
              <exon start="83519" stop="83920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83024" stop="83407"/>
              <exon start="83519" stop="83725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83903" stop="84339"/>
              <exon start="84431" stop="84443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83938" stop="84339"/>
              <exon start="84431" stop="84443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234436" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTGAAAAACTTTCAATCTGACGTTCTTTCTTTGAG : ATTGAAATGGCTAGTTTTCCTGCTGCAACATCCAACACGTCCAGAAAGAGGGCAAGAAAATCAACACCTTCATGTCGAAGGATATGGACTCCAGAAGAGGAACTTACTCTTATAGTTGGATTAAAAGAATTGTGTGTTAATGGTTGGAGAGGAGATAATGGAACCTTTAGACATGGATATTTAATGGAATTGGAACACTACATGAATGCTCGTCATCCTAGTTGTGGATTGAAATTTCTACCACATGTTGATTCTAAAATAAGAGCATGGAAAAAGAGTTATGCAACCATATCGTTGCTAAAGAGTCGAAGTGGTTTAGGATTTCAATATAGTGACGAAAGTATCTTAGTTGATTATCCAAAAGCTTGGGATGACTTGATAAAG : GTTGATCCAAATGCCAAATCAATGAACTTAAAAAAATGGCCATTATTTGCTGACTGGGAAGAGATATTTGGCAAGGATAGAGCTACTGGAGAGTTTGCAGAAGGTCCAGAAGATGCTGTTGAAGAAATAGAAAGAATTGAATCTCAAGAAATTACTAATGGCATGTCTGTGAGATTTCCTATTGATGTTGTCGACAAAGATGATGCTTCAGGCACAAGAGAAAATCAAGCTGCTCAAGAGGAACCTAATGTATCAACTGGAGCAACACAAAGTCCATTTACTGCTCAAGCTGAACCTAATGAATCAACTGGAGCAGCACAAAGTTCATTCACCGCTACAAAAGGTGAAACCCATCAATCTCAGAAAAAGGGCAACTGTTTTAAAGCATCATCTTCTAAAGTCAACGAAAAAGGTAGATGCAAAAAAAGAAAAACAGTTGAAGGTGATAATGAGACTGTTCTTAAAGGTTTGATGGAGGTGATGAAACAATTCACTGAAAGCCATGATAAGAGAATGGCTTTTTTAATTGACAAGCTAGGAGAGCGTGATCTATCTGAAATTCGTGGTAAGATATTTTCTATTATTGGATCCCCTGCATATGAAATATACAACTCAAATGAACGAGTTAAGGCAGCAATGGGAATTACTCAAGATATAAAGAGAATGGAATTCTTCTTAAGCATCAGCGAACTTGAATGTCACAGTATGATATGGATGATTATTAATGATAAGCTTTAATTCACTGAATGGTTTTTGTGTAGCTATTTTGTAAGGTCTAACCATAGTGGGATCTTTTGTTACCTAGTAGAATGTCCACAAAT : CCAACTAAAATGA</gDNA_template>
            <first_frame> I  E  K  L  S  I  *  R  S  F  F  E  :  I  E  M  A  S  F  P  A  A  T  S  N  T  S  R  K  R  A  R  K  S  T  P  S  C  R  R  I  W  T  P  E  E  E  L  T  L  I  V  G  L  K  E  L  C  V  N  G  W  R  G  D  N  G  T  F  R  H  G  Y  L  M  E  L  E  H  Y  M  N  A  R  H  P  S  C  G  L  K  F  L  P  H  V  D  S  K  I  R  A  W  K  K  S  Y  A  T  I  S  L  L  K  S  R  S  G  L  G  F  Q  Y  S  D  E  S  I  L  V  D  Y  P  K  A  W  D  D  L  I  K  :  V  D  P  N  A  K  S  M  N  L  K  K  W  P  L  F  A  D  W  E  E  I  F  G  K  D  R  A  T  G  E  F  A  E  G  P  E  D  A  V  E  E  I  E  R  I  E  S  Q  E  I  T  N  G  M  S  V  R  F  P  I  D  V  V  D  K  D  D  A  S  G  T  R  E  N  Q  A  A  Q  E  E  P  N  V  S  T  G  A  T  Q  S  P  F  T  A  Q  A  E  P  N  E  S  T  G  A  A  Q  S  S  F  T  A  T  K  G  E  T  H  Q  S  Q  K  K  G  N  C  F  K  A  S  S  S  K  V  N  E  K  G  R  C  K  K  R  K  T  V  E  G  D  N  E  T  V  L  K  G  L  M  E  V  M  K  Q  F  T  E  S  H  D  K  R  M  A  F  L  I  D  K  L  G  E  R  D  L  S  E  I  R  G  K  I  F  S  I  I  G  S  P  A  Y  E  I  Y  N  S  N  E  R  V  K  A  A  M  G  I  T  Q  D  I  K  R  M  E  F  F  L  S  I  S  E  L  E  C  H  S  M  I  W  M  I  I  N  D  K  L  *  F  T  E  W  F  L  C  S  Y  F  V  R  S  N  H  S  G  I  F  C  Y  L  V  E  C  P  Q  I :   Q  L  K  * </first_frame>
            <second_frame>  L  K  N  F  Q  S  D  V  L  S  L  R :   L  K  W  L  V  F  L  L  Q  H  P  T  R  P  E  R  G  Q  E  N  Q  H  L  H  V  E  G  Y  G  L  Q  K  R  N  L  L  L  *  L  D  *  K  N  C  V  L  M  V  G  E  E  I  M  E  P  L  D  M  D  I  *  W  N  W  N  T  T  *  M  L  V  I  L  V  V  D  *  N  F  Y  H  M  L  I  L  K  *  E  H  G  K  R  V  M  Q  P  Y  R  C  *  R  V  E  V  V  *  D  F  N  I  V  T  K  V  S  *  L  I  I  Q  K  L  G  M  T  *  *  R :   L  I  Q  M  P  N  Q  *  T  *  K  N  G  H  Y  L  L  T  G  K  R  Y  L  A  R  I  E  L  L  E  S  L  Q  K  V  Q  K  M  L  L  K  K  *  K  E  L  N  L  K  K  L  L  M  A  C  L  *  D  F  L  L  M  L  S  T  K  M  M  L  Q  A  Q  E  K  I  K  L  L  K  R  N  L  M  Y  Q  L  E  Q  H  K  V  H  L  L  L  K  L  N  L  M  N  Q  L  E  Q  H  K  V  H  S  P  L  Q  K  V  K  P  I  N  L  R  K  R  A  T  V  L  K  H  H  L  L  K  S  T  K  K  V  D  A  K  K  E  K  Q  L  K  V  I  M  R  L  F  L  K  V  *  W  R  *  *  N  N  S  L  K  A  M  I  R  E  W  L  F  *  L  T  S  *  E  S  V  I  Y  L  K  F  V  V  R  Y  F  L  L  L  D  P  L  H  M  K  Y  T  T  Q  M  N  E  L  R  Q  Q  W  E  L  L  K  I  *  R  E  W  N  S  S  *  A  S  A  N  L  N  V  T  V  *  Y  G  *  L  L  M  I  S  F  N  S  L  N  G  F  C  V  A  I  L  *  G  L  T  I  V  G  S  F  V  T  *  *  N  V  H  K   : S  N  *  N   </second_frame>
            <third_frame>   *  K  T  F  N  L  T  F  F  L  *   : D  *  N  G  *  F  S  C  C  N  I  Q  H  V  Q  K  E  G  K  K  I  N  T  F  M  S  K  D  M  D  S  R  R  G  T  Y  S  Y  S  W  I  K  R  I  V  C  *  W  L  E  R  R  *  W  N  L  *  T  W  I  F  N  G  I  G  T  L  H  E  C  S  S  S  *  L  W  I  E  I  S  T  T  C  *  F  *  N  K  S  M  E  K  E  L  C  N  H  I  V  A  K  E  S  K  W  F  R  I  S  I  *  *  R  K  Y  L  S  *  L  S  K  S  L  G  *  L  D  K   : G  *  S  K  C  Q  I  N  E  L  K  K  M  A  I  I  C  *  L  G  R  D  I  W  Q  G  *  S  Y  W  R  V  C  R  R  S  R  R  C  C  *  R  N  R  K  N  *  I  S  R  N  Y  *  W  H  V  C  E  I  S  Y  *  C  C  R  Q  R  *  C  F  R  H  K  R  K  S  S  C  S  R  G  T  *  C  I  N  W  S  N  T  K  S  I  Y  C  S  S  *  T  *  *  I  N  W  S  S  T  K  F  I  H  R  Y  K  R  *  N  P  S  I  S  E  K  G  Q  L  F  *  S  I  I  F  *  S  Q  R  K  R  *  M  Q  K  K  K  N  S  *  R  *  *  *  D  C  S  *  R  F  D  G  G  D  E  T  I  H  *  K  P  *  *  E  N  G  F  F  N  *  Q  A  R  R  A  *  S  I  *  N  S  W  *  D  I  F  Y  Y  W  I  P  C  I  *  N  I  Q  L  K  *  T  S  *  G  S  N  G  N  Y  S  R  Y  K  E  N  G  I  L  L  K  H  Q  R  T  *  M  S  Q  Y  D  M  D  D  Y  *  *  *  A  L  I  H  *  M  V  F  V  *  L  F  C  K  V  *  P  *  W  D  L  L  L  P  S  R  M  S  T  N  :  P  T  K  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0045A18.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80744" stop="80758"/>
                    <exon start="83024" stop="83407"/>
                    <exon start="83519" stop="84256"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1134</number_coding_nucleotides>
                  <number_encoded_amino_acids>378</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSFFEIEMASFPAATSNTSRKRARKSTPSCRRIWTPEEELTLIVGLKELCVNGWRGDNGTFRHGYLMELEHYMNARHPSCGLKFLPHVDSKIRAWKKSYATISLLKSRSGLGFQYSDESILVDYPKAWDDLIKVDPNAKSMNLKKWPLFADWEEIFGKDRATGEFAEGPEDAVEEIERIESQEITNGMSVRFPIDVVDKDDASGTRENQAAQEEPNVSTGATQSPFTAQAEPNESTGAAQSSFTATKGETHQSQKKGNCFKASSSKVNEKGRCKKRKTVEGDNETVLKGLMEVMKQFTESHDKRMAFLIDKLGERDLSEIRGKIFSIIGSPAYEIYNSNERVKAAMGITQDIKRMEFFLSISELECHSMIWMIINDKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="93777" PGL_stop="92920"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93777" e_stop="93279"/>
            <exon e_start="93103" e_stop="92920"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.896"/>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.896">
            <gDNA_exon_boundary e_start="93777" e_stop="93279" e_length="499"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="93278" i_stop="93104" i_length="175"/>
          </intron>
          <exon e_serial="2" e_score="0.918">
            <gDNA_exon_boundary e_start="93103" e_stop="92920" e_length="184"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93777" stop="93279"/>
              <exon start="93103" stop="92920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241789" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGTCCGAACTTCAAGACATCAAGACGCGAAGGAAAGAATCCAGTCCGAGCTAGGAACAATAGCTCACCCTGAAATCTGATGTGGTGAAGACTGGCTAGAGTTACGGTTGAGTTGAAGACGATGGTACGTTTGCTGCACTCCACAAATAACAAAGAGAAAACATACAAGTAAGGGTCAGTACAAGCACAAGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAAGCAATATATATCAGATAATAACATAAAATCAACCATAACACTTAACAGGTGACAACAACAAGTACCATAACCATTGGGCACAACCCAAGCACATCTATGAGGACTCAATCCTCCACACCATACTTATTTGTGAAAGGTTCTTTAAGTTTTGAGTATATTAAGATAATTCAAGATTCATTCTCTTTATTCCTCTTGTGTAGGAACGTGACACTCCGATCCCCTAATACTACGTGTCGGTTCGTGACACCCGATCCACTAATACTACGTGTCG : GTTCGTGACACCCGATCCCCTAATACTATGTGTCGGTTCGTGACACCCGATCCACTAATACTATGTGTTGGTTCGTGACACCCGATCCACTAATACTATGTGTCAGTTCGTGACACCCGATCCACTAACCTCATTCTTTTAGTTCATCAAGCCTTCTTTTATACCAAGGCATCATTATTAATAG</gDNA_template>
            <first_frame> M  S  E  L  Q  D  I  K  T  R  R  K  E  S  S  P  S  *  E  Q  *  L  T  L  K  S  D  V  V  K  T  G  *  S  Y  G  *  V  E  D  D  G  T  F  A  A  L  H  K  *  Q  R  E  N  I  Q  V  R  V  S  T  S  T  S  T  E  *  I  S  S  A  N  S  K  *  K  A  I  Y  I  R  *  *  H  K  I  N  H  N  T  *  Q  V  T  T  T  S  T  I  T  I  G  H  N  P  S  T  S  M  R  T  Q  S  S  T  P  Y  L  F  V  K  G  S  L  S  F  E  Y  I  K  I  I  Q  D  S  F  S  L  F  L  L  C  R  N  V  T  L  R  S  P  N  T  T  C  R  F  V  T  P  D  P  L  I  L  R  V   : G  S  *  H  P  I  P  *  Y  Y  V  S  V  R  D  T  R  S  T  N  T  M  C  W  F  V  T  P  D  P  L  I  L  C  V  S  S  *  H  P  I  H  *  P  H  S  F  S  S  S  S  L  L  L  Y  Q  G  I  I  I  N   </first_frame>
            <second_frame>  C  P  N  F  K  T  S  R  R  E  G  K  N  P  V  R  A  R  N  N  S  S  P  *  N  L  M  W  *  R  L  A  R  V  T  V  E  L  K  T  M  V  R  L  L  H  S  T  N  N  K  E  K  T  Y  K  *  G  S  V  Q  A  Q  V  L  S  R  Y  H  R  P  T  Q  N  R  K  Q  Y  I  S  D  N  N  I  K  S  T  I  T  L  N  R  *  Q  Q  Q  V  P  *  P  L  G  T  T  Q  A  H  L  *  G  L  N  P  P  H  H  T  Y  L  *  K  V  L  *  V  L  S  I  L  R  *  F  K  I  H  S  L  Y  S  S  C  V  G  T  *  H  S  D  P  L  I  L  R  V  G  S  *  H  P  I  H  *  Y  Y  V  S  :  V  R  D  T  R  S  P  N  T  M  C  R  F  V  T  P  D  P  L  I  L  C  V  G  S  *  H  P  I  H  *  Y  Y  V  S  V  R  D  T  R  S  T  N  L  I  L  L  V  H  Q  A  F  F  Y  T  K  A  S  L  L  I  </second_frame>
            <third_frame>   V  R  T  S  R  H  Q  D  A  K  E  R  I  Q  S  E  L  G  T  I  A  H  P  E  I  *  C  G  E  D  W  L  E  L  R  L  S  *  R  R  W  Y  V  C  C  T  P  Q  I  T  K  R  K  H  T  S  K  G  Q  Y  K  H  K  Y  *  V  D  I  I  G  Q  L  K  I  E  S  N  I  Y  Q  I  I  T  *  N  Q  P  *  H  L  T  G  D  N  N  K  Y  H  N  H  W  A  Q  P  K  H  I  Y  E  D  S  I  L  H  T  I  L  I  C  E  R  F  F  K  F  *  V  Y  *  D  N  S  R  F  I  L  F  I  P  L  V  *  E  R  D  T  P  I  P  *  Y  Y  V  S  V  R  D  T  R  S  T  N  T  T  C  R :   F  V  T  P  D  P  L  I  L  C  V  G  S  *  H  P  I  H  *  Y  Y  V  L  V  R  D  T  R  S  T  N  T  M  C  Q  F  V  T  P  D  P  L  T  S  F  F  *  F  I  K  P  S  F  I  P  R  H  H  Y  *  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0045A18.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93504" stop="93279"/>
                    <exon start="93103" stop="93096"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QVTTTSTITIGHNPSTSMRTQSSTPYLFVKGSLSFEYIKIIQDSFSLFLLCRNVTLRSPNTTCRFVTPDPLILRVGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="96067" PGL_stop="95737"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96067" e_stop="95737"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="96067" e_stop="95737" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96067" stop="95737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCTGTCTCAGGCTTGGCCAACGTTACAGTTTTAGCATTACAATCGAAGATTGCAAAATTTGGGGAAAGCCAAGTCATACCCAGAATTACATCGAAATCAACCATCTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCATAAAAGTCACAAGACAATTCCTATACACCCTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGATCAAATAATACAGAAGCCACGCAATCACAAACCAA</gDNA_template>
            <first_frame> D  L  S  Q  A  W  P  T  L  Q  F  *  H  Y  N  R  R  L  Q  N  L  G  K  A  K  S  Y  P  E  L  H  R  N  Q  P  S  L  R  *  P  S  L  H  E  Y  C  S  P  *  K  S  Q  D  N  S  Y  T  P  F  Q  L  S  Q  T  H  P  P  E  *  K  H  E  *  A  C  Q  A  I  H  N  V  N  *  D  Q  *  Q  M  R  K  I  H  M  K  M  W  I  Q  D  Q  I  I  Q  K  P  R  N  H  K  P  </first_frame>
            <second_frame>  I  C  L  R  L  G  Q  R  Y  S  F  S  I  T  I  E  D  C  K  I  W  G  K  P  S  H  T  Q  N  Y  I  E  I  N  H  L  *  D  N  Q  V  Y  M  S  I  A  P  H  K  S  H  K  T  I  P  I  H  P  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  V  K  Q  F  T  M  *  I  K  T  S  S  K  *  G  R  Y  I  *  K  C  G  S  R  I  K  *  Y  R  S  H  A  I  T  N  Q </second_frame>
            <third_frame>   S  V  S  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  I  K  V  T  R  Q  F  L  Y  T  L  S  T  I  T  D  S  P  T  G  V  E  T  R  I  G  M  S  S  N  S  Q  C  K  L  R  P  V  A  N  E  E  D  T  Y  E  N  V  D  P  G  S  N  N  T  E  A  T  Q  S  Q  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0045A18.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95936" stop="95739"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLLPIKVTRQFLYTLSTITDSPTGVETRIGMSSNSQCKLRPVANEEDTYENVDPGSNNTEATQSQT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="95767" PGL_stop="96427"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95767" e_stop="96427"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.921"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.921">
            <gDNA_exon_boundary e_start="95767" e_stop="96427" e_length="661"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95767" stop="96427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352117" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGATCCTGGATCCACATTTTCATATGTATCTTCCTCATTTGCTACTGGTCTTAATTTACATTGTGAATTGCTTGACATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAGGGTGTATAGGAATTGTCTTGTGACTTTTATGGGGAGCAATACTCATGTAGACTTGGTTATCTTAGAGATGGTTGATTTCGATGTAATTCTGGGTATGACTTGGCTTTCCCCAAATTTTGCAATCTTCGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGAGACAGATCTGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTCCTTCGTGCTAAGAGAATGGTTAGAAAGGGTTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCGGTTTCAATAGTCCGTGAGTTTCTGGACGTGTTTCCTGTAAACCTTCCTGGTATGCCACCGGATAGGGATATTGATTTCTGTATTGATCTGGAGCCGGGCACTCGCCCCATTTCCATACCCCCTTATAGGTTGGCTCCCGCTGAGTTAAGAGAGTTAAAGGCCCAACTTCAAGAGTTGTTAAACAAGGGCTTTATTAGACCAAGTGCATCCCCTTGGG</gDNA_template>
            <first_frame> F  D  P  G  S  T  F  S  Y  V  S  S  S  F  A  T  G  L  N  L  H  C  E  L  L  D  M  P  I  R  V  S  T  P  V  G  E  S  V  I  V  E  R  V  Y  R  N  C  L  V  T  F  M  G  S  N  T  H  V  D  L  V  I  L  E  M  V  D  F  D  V  I  L  G  M  T  W  L  S  P  N  F  A  I  F  D  C  N  A  K  T  V  T  L  A  K  P  E  T  D  L  L  V  W  E  G  D  Y  T  S  T  P  V  R  I  I  S  F  L  R  A  K  R  M  V  R  K  G  C  L  A  F  L  A  H  L  R  D  D  T  T  Q  V  P  S  I  E  S  V  S  I  V  R  E  F  L  D  V  F  P  V  N  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  L  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  N  K  G  F  I  R  P  S  A  S  P  W  </first_frame>
            <second_frame>  L  I  L  D  P  H  F  H  M  Y  L  P  H  L  L  L  V  L  I  Y  I  V  N  C  L  T  C  L  F  V  F  L  L  R  W  V  S  L  *  *  L  K  G  C  I  G  I  V  L  *  L  L  W  G  A  I  L  M  *  T  W  L  S  *  R  W  L  I  S  M  *  F  W  V  *  L  G  F  P  Q  I  L  Q  S  S  I  V  M  L  K  L  *  R  W  P  S  L  R  Q  I  C  *  C  G  R  V  T  T  L  P  L  Q  F  V  S  S  P  S  F  V  L  R  E  W  L  E  R  V  V  *  L  S  W  H  T  S  G  M  I  L  P  K  Y  L  Q  L  S  R  F  Q  *  S  V  S  F  W  T  C  F  L  *  T  F  L  V  C  H  R  I  G  I  L  I  S  V  L  I  W  S  R  A  L  A  P  F  P  Y  P  L  I  G  W  L  P  L  S  *  E  S  *  R  P  N  F  K  S  C  *  T  R  A  L  L  D  Q  V  H  P  L  G </second_frame>
            <third_frame>   *  S  W  I  H  I  F  I  C  I  F  L  I  C  Y  W  S  *  F  T  L  *  I  A  *  H  A  Y  S  C  F  Y  S  G  G  *  V  C  D  S  *  K  G  V  *  E  L  S  C  D  F  Y  G  E  Q  Y  S  C  R  L  G  Y  L  R  D  G  *  F  R  C  N  S  G  Y  D  L  A  F  P  K  F  C  N  L  R  L  *  C  *  N  C  N  V  G  Q  A  *  D  R  S  V  S  V  G  G  *  L  H  F  H  S  S  S  Y  H  L  L  P  S  C  *  E  N  G  *  K  G  L  F  S  F  L  G  T  P  Q  G  *  Y  Y  P  S  T  F  N  *  V  G  F  N  S  P  *  V  S  G  R  V  S  C  K  P  S  W  Y  A  T  G  *  G  Y  *  F  L  Y  *  S  G  A  G  H  S  P  H  F  H  T  P  L  *  V  G  S  R  *  V  K  R  V  K  G  P  T  S  R  V  V  K  Q  G  L  Y  *  T  K  C  I  P  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0045A18.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95767" stop="96426"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDPGSTFSYVSSSFATGLNLHCELLDMPIRVSTPVGESVIVERVYRNCLVTFMGSNTHVDLVILEMVDFDVILGMTWLSPNFAIFDCNAKTVTLAKPETDLLVWEGDYTSTPVRIISFLRAKRMVRKGCLAFLAHLRDDTTQVPSIESVSIVREFLDVFPVNLPGMPPDRDIDFCIDLEPGTRPISIPPYRLAPAELRELKAQLQELLNKGFIRPSASPW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="98318" PGL_stop="97287"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98318" e_stop="97287"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="98318" e_stop="97287" e_length="1032"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98318" stop="97777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97873" stop="97287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97873" stop="97287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97873" stop="97320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352647" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGGCATGCAATGTTTTCCAAAATTTAGAAGTAAATGGCGCACCTCTATCTGATATAATGGAAAGTGGAACTCCATACAATCGAACAATTTCTGAGATGTAAAGTTTGGCTAACTTCTCTGCATTATAAGTCACTTTGACCGGAATGAAGTGAGCAGACTTAGTTAATCTGTCAACAATTACCCATATGGAGTCATACTTACCCATTGTCTTTGGAAGACCAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGACATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACTTGCTGACAATTCGGGCATTGAGCAACAAAATCAACAATGTCACGCTTCATCCTACTCTACCAAAAATGTTGCTTTAGGTCACGATACATCTTGGTTGCACCAGGATGTATAGAGTACTTTGAACTATGAGCCTTTGTAAGAATAGTGCGAATCAAATCATCGACGCGGGGTACACATACTCTTCCCTTAATTCTCAAAACACCTTCCTCATCGATTTTTGCTTCTTTATCCTCTCCTCGCAATACCTTATCTCGAATCCGAATCAGTTTCTCATTGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATTCTCCCTTCTCATTTACTTCTAGCCTCATAAAGTCATTAGCCAGAGTCTGAACCTCTCTAGACAATGGGCGTCTAGAAACCTGCAAGTGGGCTAGACTTCCCATTCTCCCTGCCTTTCTACTTAAGGCATCTGCCACCACATTAGACTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGTTCCATCTCTCTCCTCAGTCTCAAATTCAAATCTTTTTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACATTTAACCCCATATAGATAATGTCTCCATTGCTTTAATGCAAACACTACCGCAGCCAACTCCAAATCATGGGTCAGATAATTACGTTCATGCACCTTTAATTGC</gDNA_template>
            <first_frame> S  A  C  N  V  F  Q  N  L  E  V  N  G  A  P  L  S  D  I  M  E  S  G  T  P  Y  N  R  T  I  S  E  M  *  S  L  A  N  F  S  A  L  *  V  T  L  T  G  M  K  *  A  D  L  V  N  L  S  T  I  T  H  M  E  S  Y  L  P  I  V  F  G  R  P  T  T  K  S  I  A  I  L  S  H  F  H  S  G  M  D  I  L  *  S  V  P  P  G  L  W  C  S  Y  F  T  C  *  Q  F  G  H  *  A  T  K  S  T  M  S  R  F  I  L  L  Y  Q  K  C  C  F  R  S  R  Y  I  L  V  A  P  G  C  I  E  Y  F  E  L  *  A  F  V  R  I  V  R  I  K  S  S  T  R  G  T  H  T  L  P  L  I  L  K  T  P  S  S  S  I  F  A  S  L  S  S  P  R  N  T  L  S  R  I  R  I  S  F  S  L  V  N  C  F  P  L  I  L  S  R  K  E  D  L  A  S  T  Q  A  K  N  S  P  F  S  F  T  S  S  L  I  K  S  L  A  R  V  *  T  S  L  D  N  G  R  L  E  T  C  K  W  A  R  L  P  I  L  P  A  F  L  L  K  A  S  A  T  T  L  D  F  P  G  *  Y  K  I  V  I  S  *  S  F  S  S  S  I  S  L  L  S  L  K  F  K  S  F  *  V  K  T  Y  C  K  L  R  *  S  I  *  T  S  H  L  T  P  Y  R  *  C  L  H  C  F  N  A  N  T  T  A  A  N  S  K  S  W  V  R  *  L  R  S  C  T  F  N  C </first_frame>
            <second_frame>  R  H  A  M  F  S  K  I  *  K  *  M  A  H  L  Y  L  I  *  W  K  V  E  L  H  T  I  E  Q  F  L  R  C  K  V  W  L  T  S  L  H  Y  K  S  L  *  P  E  *  S  E  Q  T  *  L  I  C  Q  Q  L  P  I  W  S  H  T  Y  P  L  S  L  E  D  Q  P  R  S  P  L  Q  F  S  P  T  S  I  Q  E  W  T  F  S  E  V  S  L  Q  A  S  G  V  H  T  L  L  A  D  N  S  G  I  E  Q  Q  N  Q  Q  C  H  A  S  S  Y  S  T  K  N  V  A  L  G  H  D  T  S  W  L  H  Q  D  V  *  S  T  L  N  Y  E  P  L  *  E  *  C  E  S  N  H  R  R  G  V  H  I  L  F  P  *  F  S  K  H  L  P  H  R  F  L  L  L  Y  P  L  L  A  I  P  Y  L  E  S  E  S  V  S  H  W  *  T  A  F  L  *  S  Y  Q  E  R  K  I  L  P  P  H  R  P  K  I  L  P  S  H  L  L  L  A  S  *  S  H  *  P  E  S  E  P  L  *  T  M  G  V  *  K  P  A  S  G  L  D  F  P  F  S  L  P  F  Y  L  R  H  L  P  P  H  *  T  F  P  D  D  T  R  *  *  Y  H  S  P  S  V  V  P  S  L  S  S  V  S  N  S  N  L  F  E  *  R  H  T  V  N  Y  D  D  P  Y  R  L  H  I  *  P  H  I  D  N  V  S  I  A  L  M  Q  T  L  P  Q  P  T  P  N  H  G  S  D  N  Y  V  H  A  P  L  I   </second_frame>
            <third_frame>   G  M  Q  C  F  P  K  F  R  S  K  W  R  T  S  I  *  Y  N  G  K  W  N  S  I  Q  S  N  N  F  *  D  V  K  F  G  *  L  L  C  I  I  S  H  F  D  R  N  E  V  S  R  L  S  *  S  V  N  N  Y  P  Y  G  V  I  L  T  H  C  L  W  K  T  N  H  E  V  H  C  N  S  L  P  L  P  F  R  N  G  H  S  L  K  C  P  S  R  P  L  V  F  I  L  Y  L  L  T  I  R  A  L  S  N  K  I  N  N  V  T  L  H  P  T  L  P  K  M  L  L  *  V  T  I  H  L  G  C  T  R  M  Y  R  V  L  *  T  M  S  L  C  K  N  S  A  N  Q  I  I  D  A  G  Y  T  Y  S  S  L  N  S  Q  N  T  F  L  I  D  F  C  F  F  I  L  S  S  Q  Y  L  I  S  N  P  N  Q  F  L  I  G  K  L  L  S  F  N  L  I  K  K  G  R  S  C  L  H  T  G  Q  K  F  S  L  L  I  Y  F  *  P  H  K  V  I  S  Q  S  L  N  L  S  R  Q  W  A  S  R  N  L  Q  V  G  *  T  S  H  S  P  C  L  S  T  *  G  I  C  H  H  I  R  L  S  R  M  I  Q  D  S  D  I  I  V  L  Q  *  F  H  L  S  P  Q  S  Q  I  Q  I  F  L  S  K  D  I  L  *  T  T  M  I  H  I  D  F  T  F  N  P  I  *  I  M  S  P  L  L  *  C  K  H  Y  R  S  Q  L  Q  I  M  G  Q  I  I  T  F  M  H  L  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0045A18.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98155" stop="97892"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LICQQLPIWSHTYPLSLEDQPRSPLQFSPTSIQEWTFSEVSLQASGVHTLLADNSGIEQQNQQCHASSYSTKNVALGHDTSWLHQDV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0045A18.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97874" stop="97614"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AFVRIVRIKSSTRGTHTLPLILKTPSSSIFASLSSPRNTLSRIRISFSLVNCFPLILSRKEDLASTQAKNSPFSFTSSLIKSLARV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0045A18.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97881" stop="97642"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMSLCKNSANQIIDAGYTYSSLNSQNTFLIDFCFFILSSQYLISNPNQFLIGKLLSFNLIKKGRSCLHTGQKFSLLIYF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLe0045A18.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98151" stop="97927"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVNNYPYGVILTHCLWKTNHEVHCNSLPLPFRNGHSLKCPSRPLVFILYLLTIRALSNKINNVTLHPTLPKMLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 207 chains have been computed
$ 
$ memory statistics:
$ 67152 bytes spliced alignments in total
$ 24 spliced alignments have been stored
$ 2798 bytes was the average size of a spliced alignment
$ 19104 bytes predicted gene locations in total
$ 12 predicted gene locations have been stored
$ 1592 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 244 backtrace matrices have been allocated
$ 
$ date finished: 2009-02-02 14:56:23
-->
