<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-20 08:30:04"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356285" ref_strand="+" ref_description="SGN-E356285 [cTOS-20-C11]">
      <seq>ttcattgctatgtacatttatgagccaataattcttggtagagaaacaagtattgacatatggattatggagaaaaatggctattggactaaaaatatgagaattggcccttttttaaatatcaaaagatcaattggatatggaaaaaatggggaaatttttcttgaagttgttacatatcaattggacatatttgatccttttttaaagaacaataaggttcttagccaacaaaaaaatggctactctttgcaagcttttgcttacaatgaaagcttaatttcattgaaaaatatttcattcttggaatttagttgggtaatgatataaatgaaaatgatggctataatttaaattctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="-" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="7875" stop="6916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7575" g_stop="7216" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="361" polyA_stop="371"/>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="-" ref_id="SGN-E356285" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7575" e_stop="7216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTGCTATGTACATTTATGAGCCAATAATTCTTGGTAGAGAAACAAGTATTGACATATGGATTATGGAGAAAAATGGCTATTGGACTAAAAATATGAGAATTGGCCCTTTTTTAAATATCAAAAGATCAATTGGATATGGAAAAAATGGGGAAATTTTTCTTGAAGTTGTTACATATCAATTGGACATATTTGATCCTTTTTTAAAGAACAATAAGGTTCTTAGCCAACAAAAAAATGGCTACTCTTTGCAAGCTTTTGCTTACAATGAAAGCTTAGTTTCATTGAAAAATATTTCATTCTTGTAATTTAGTTGGTTAATGATATAAATGAAAATGATGGCTATAATTTAAATTCTA</genome_strand>
        <mrna_strand>TTCATTGCTATGTACATTTATGAGCCAATAATTCTTGGTAGAGAAACAAGTATTGACATATGGATTATGGAGAAAAATGGCTATTGGACTAAAAATATGAGAATTGGCCCTTTTTTAAATATCAAAAGATCAATTGGATATGGAAAAAATGGGGAAATTTTTCTTGAAGTTGTTACATATCAATTGGACATATTTGATCCTTTTTTAAAGAACAATAAGGTTCTTAGCCAACAAAAAAATGGCTACTCTTTGCAAGCTTTTGCTTACAATGAAAGCTTAATTTCATTGAAAAATATTTCATTCTTGGAATTTAGTTGGGTAATGATATAAATGAAAATGATGGCTATAATTTAAATTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354793" ref_strand="+" ref_description="SGN-E354793 [cTOS-19-C10]">
      <seq>ttcattgctatgtacatttatgagccaataattcttggtagagaaacaagtattgacatatggattatggagaaaaatggctattggactaaaaatatgagaattggcccttttttaaatatcaaaagatcaattggatatggaaaaaatggggaaatttttcttgaagttgttacatatcaattggacatatttgatccttttttaaagaacaataaggttcttagccaacaaaaaaatggctactctttgcaagcttttgcttacaatgaaagcttagtttcattgaaaaatatttcattcttgtaatttagttggttaatgatataaatgaaaatgatggctataatttaaattctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="-" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="7875" stop="6916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7575" g_stop="7216" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="361" polyA_stop="371"/>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="-" ref_id="SGN-E354793" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7575" e_stop="7216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTGCTATGTACATTTATGAGCCAATAATTCTTGGTAGAGAAACAAGTATTGACATATGGATTATGGAGAAAAATGGCTATTGGACTAAAAATATGAGAATTGGCCCTTTTTTAAATATCAAAAGATCAATTGGATATGGAAAAAATGGGGAAATTTTTCTTGAAGTTGTTACATATCAATTGGACATATTTGATCCTTTTTTAAAGAACAATAAGGTTCTTAGCCAACAAAAAAATGGCTACTCTTTGCAAGCTTTTGCTTACAATGAAAGCTTAGTTTCATTGAAAAATATTTCATTCTTGTAATTTAGTTGGTTAATGATATAAATGAAAATGATGGCTATAATTTAAATTCTA</genome_strand>
        <mrna_strand>TTCATTGCTATGTACATTTATGAGCCAATAATTCTTGGTAGAGAAACAAGTATTGACATATGGATTATGGAGAAAAATGGCTATTGGACTAAAAATATGAGAATTGGCCCTTTTTTAAATATCAAAAGATCAATTGGATATGGAAAAAATGGGGAAATTTTTCTTGAAGTTGTTACATATCAATTGGACATATTTGATCCTTTTTTAAAGAACAATAAGGTTCTTAGCCAACAAAAAAATGGCTACTCTTTGCAAGCTTTTGCTTACAATGAAAGCTTAGTTTCATTGAAAAATATTTCATTCTTGTAATTTAGTTGGTTAATGATATAAATGAAAATGATGGCTATAATTTAAATTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285244" ref_strand="+" ref_description="SGN-E285244 [cLER-20-J10]">
      <seq>gctagcaaaggcggcggagagaatcggaaattcagtccggcggcaagcaataactattacagacgccgccgctgctcgaattagcaatctccttcagcaacggcagcgtccttttcttaagctcggcgttaaagctcgtggatgcaacggcttatcctacacgctcaattacgccgatgagaagggtaaatttgatgagttgattgaagagaagggagtaaaaatacttattgatcctaaggcattgatgcacgtgattggtaccaagatggattttgtagatgataaattgaggtctgagttcatttttattaatcccaactcgaaagggcaatgcggttgtggtgagtctttcatgacaacagccagtaaaggtgctgaaaagtgagatgattttaatgagacatgatgtttataatgtactcattaggtaggcgaacaatgaaataaagatttattcccagaattaaaatgttatatcttatacatgtctttgtattgtgtttattagatgtaaaaaattgccagtcttggcatttgtataatctactgatactgatattacagaaatggaaagagtaaaattatcttgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="-" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="33907" stop="21799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33607" g_stop="33432" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33431" i_stop="23237" i_length="10195">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23236" g_stop="23119" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="294" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23118" i_stop="22404" i_length="715">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22403" g_stop="22093" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="605" r_length="311" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="-" ref_id="SGN-E285244" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33607" e_stop="33432"/>
          <exon e_start="23236" e_stop="23119"/>
          <exon e_start="22403" e_stop="22093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAGCAAAGGCGGCGGAGAGAATCGGAAATTCAGTCCGGCGGCAAGCAATAACTATTACAGACGCCGCCGCTGCTCGAATTAGCAATCTCCTTCAGCAACGGCAGCGTCCTTTTCTTAAGCTCGGCGTTAAAGCTCGTGGATGCAACGGCTTATCCTACACGCTCAATTACGCCGGTAAATATCATATTCTGTAATACTATTAACTCATTTTTCATATTTGTATAGATTAATTTTCCTATTCAATAGAACTAATCGAATTCGATCAATTCTGTAGTCACAGTTTTTCTTTTATGATATTAGTATGATGGAAATATGTACCTTAGAAAGTTAGGTCAAAGTCCATACAATTTGATTCTTGAGAAGCGAAACACGACAAGTTAACTTCCGTATTGCACTTCTTTTTGGGCCAAAATTTGTTAGATATGTTGGACCTTTGGTGTAGGTTACCCGAGGCGAATTGAGCATTTTTTTTCGTTGATAAGGTAATTTGTATATAAAGTCAGCATCAAATTGATTGCTTGTTATATTTAAAAGTTACAATCCAGCGTAGTTTCTATATCCATCATATACAGCAGCATTGAGCTTAAGAAATCGAGGTGAATCCAGCATTTAGAGTCAATAGGCTTAGAATACATAACTGCTGGCAAATGTATTACCTGGTTTGATTCGGAAGCAGTGGATTAAGCAAATATATGTTCAACTTATGTGGTAGTCTTTTGGAACCAAATTGTCAAATTTGGTTGATGTTGTCCTACTGCTAGGCGGATATACCATCAAAGCGTGTCAAAAGACTAGCAATGCTCCCTCATCCCAATTTAAGTGTCTTACTTTTCTTTTTGGTATGTCTCGAAAAGAGTGCCTTTTTTTCTTCTTCTATATTTAGTAAGTTATTCCAATTTTAGCATTCTACACGGCAAGCTTAAGATCATAAGATTTAAGAAACTACACACTTCTTTAGTTTAAAACCACAAGATTCAAAAGTCTCCCTTTATTTCCTAGACTTCGTGACTAGTCAAACTAAAGACTCTTAAGTTGGGACGGAGGGAGTCATACATTTGGCCCTTTATTAAATAATGTGGTGTTTGGGTACTTGCTACCTCCCACTAACACATGTTAACTTGATCTTGCCTACTTAATTGACTTATAGGCCACACATTTGAATGCTGTAATTTGTTCATTTATTTATAATCAAAAGAAAAATGATGTAATCTCTGCAGTCAAAGGCGAATCCAGTATTTGAAGACGACGGGTACACCACCAAAGACTAATGCACGTTAGTTAAAGTATGTCACCCAATACTGATTAACTTTATTAAACATAAAAAGCTAAGGTACTAATGTATAAATATGAATTAAATGAGTCTTCTACATAAAGTTTGCTTTGGAGAGTAAAGGTTTTGAATAGTAATTTGCGCCATCAAGTTGCAGTTTAAAACTAGTCATCCCCCTTCTTTTATTCAATACTTTTTAACTTCTCAGATAAAAACAAATAAAGAAACAAAATAAACTATAAATGGGATTTGAACCCAGTCCCTCACCTAGGAGAGCCATTTAAACCACTGCACCCAATCAACTTTAGTATTTTAAGATGCCTAATATAATATATTTCATATCTCAAGGTGTGTATATATATATATATAATTTTTCCCAAAGTTCACGGGATGGTGAAGTAACAAAAAGTAGTGTTTAGACTAGACTAAATATGATTAAGGATGTAACTCTGGCAGACAGTTTCACATGACTATATAACACCTTTCAGCTTCAGAAGAAACTTGTGTAACATTGCTCATCAATCTATTGCAACTCCCGCTTCAAAGACGTCACGCATGGCATCAAAAAGCCTTGGCTTAATGCCTTCGTAACGGAATGGGTATCCCTTTGGATGCTCCTGAAAAAAAAATTGGCACATAAAATTGGTGAGTTGAAGTGGACTGAAACACTGAAAAGTCTTTCTATCCTTATTGTTAAACAAGGAAAATTGTTAATAGCAGATGTGAAGTTAGTTTCCCTTGAGTTTTGAAAAAATTGTTTGTGATCAGTAGTTCCTTTACGGTAATTTCTAAGTACGATATATACTCCTTGAGAAGCATTTCATTGTTGATGAATGTTGACGTTGATATGTTTATCTTAGTTAGGTTGATCCTGCCAAGTGCCAACAGTGTACTTGGGTATGCCTTTAGGAGCTAAATCAAAGTCTAAGGAAATCTGAAATAATGTGGTTGAAAAATGTGAGAAGAAGCTGGCAAGGTGGAAAAGACAGTACTTATCACTAGGGGGTACACAATCATTAGTAGGCTAGACAGAATCAGGAAGAAGTTTGTGGCAAGGAGATAAGGATAGGATACGCTACCACTTGGTCACATGAGGATTTTTGATAATTGACAAGAAGTTTGGGGATAAAGAATTTGAATACTCAAAGTGAAGCACTCAGAAGGAAATGGCTATGGAAGTATTCCAATGACAAAGATACACTGTAGGGGAGAGTCATAGAAGCTAAGTATGAGGAGGAAGACAAATGAACGGTGAAGGAAATTTTAATTCCTTATGGAGTATGGAGATCCATCGGAGATCTCTTGAATGAGCTGAAGTGCTTCTTCAAGATCAAGGTGAACCATGGGGCCAAAACTAGGTTCTGGACAGATGAATGGCACGGAGAAGGCAACTTAGAAAGGCTTTTACCAGATATCTACTCATTTGTACTATACCAACAGGCAACAGAGTGCCATAGTGGAATTATGAACAATTGAGGGATGGAAATTCAATTTTAGAAGGCAATTCAATGATTGAGAAATACTAAGAATGTCAGATTTTATCAGTTGAGCCATTCAGTGGATTGGTAGCAGATGAAGATGAACTATGGTGGAAGGGAAATGAGAAAGGCACATACAAAGTGAGCAAAGCGTATAGGAAAATGAACCACAAGCAGCAGCCGAACAGTTGGCCATGGAAGAACATTTGGAAAACCAAAATACCATATAAAGTGAGCATGCTTTGTGTGGCTCTAGCAAAGGAGGCATTGCTTACCCAAGAGAACCCAATGAAAAAAGGGATAATTTTAAGCCCCAGGTGCTTCTTGTGCGGGGAGCAGGCAGAGACTATAAATCATCTATTTCTATATTGTACAATTACAAGACAACTATGGAGAATGTTTTTGAACCTTAGAGGAATAGGCCGAATAGCACGGAGCATGCCTGGGAAAATTACAGAGGCCATAACAAGCTAGGAAAAAGCTGGGTTTTTGGCCAATAATAGAGGCAGGTGGAGGATAGTCCCACCAAGCATTTGGTGGACAATATGGAAGGAGAGGAATTCTAGGTGTTTTGAGAGCATAGAGAACAATATGCAACATATTAAGTTCAATTGCATCTTGCTATTGTGTTTTTGGTGTAATCAGTTGCTTTTAAATGATCACTGTCTATTATTGATGTTGTAGACACATTATAGACATAGGATCATAGATGTAGGTAGTATTTTGTAAATATGGAGTTACTACAACTCTTCTAAGATTCAGATTCTAACATATATAGACAAAGTTACCAGTTTAAAAAAAAAAGAAAAAATAATGAAGCAGAAAGCACACTTACCAAGGAATATGATATCCACACCCCTGGACGGGCATACGTCATTGAGTTAGTCCTTCTATCCCATTGGACTCCTCGTCTGGCCAACAAAGTTGAAAATAACCAGTATTTTCTCATGAAAATTCTTAGTTTTGCCTTCAGATGATCAACTGAAAGGTGTGGATTCATCCCCTGCATCTGGTTAGTTACGATGCTCCAGCTTTCCTCTTGGAATGTACTTCCAAATTCATAATCTTTGCTGATCACCTTGGCCAACAGTTTGAGAAATTCATACTGTTGTTCTTCTGTCATAACTACATGACCGTTTGGGCCTGGTAGGTCCATCTGCAGTAAAGTAAGGGAAAGTGTACTCATTATGTAGCATTTTCACATCATTATAAAAATAATAGATTGAAACTTTTGTGTGCGTCTCTGTCTGGTTATTTGATAATATGGTTAATCTTTCTAAAATAAATGCTAAGAAGCATCTTGATGCTAACAATTCAATTAGAAAATTTTGAGCATCTTGATCTGCTTAACTATTATTGGCAGAGCAGAGTTAGGCTACTAATATGCTCCTTCCTACAGCTTTGTTTTTTTTGAGCTTAAATGCATTTGAATTTCGAGGCATAAGCTTCATTCGGTATACTAGTGTTGGCCTGTTGGGTATCAACTAATGAGCTACATGATGAAGAAACAGAAAAAAGAGAGATGTTTTAGTTTTGAGTATTTCAGTCATAAACATCGCCAAAGAGCTGGCCGTATACAAGGGGTATACCCAAAAATAAAGAATCTACAATACGTGATTCTTTACAAAATTCACCCATTCTTTTATACACCATGGAGCTTTATGGGTTCACCAAAAGAAAATAAGTGAACGGAGGCTACTCCTCAACTCTTAAAACTCTATACTACCTCTTCAAAAGCTCTTTTATTTCTCCCCCTCCAAACAACCCACACAAGAGGAACCATATTCCATGTCCTACAACTTCTCCAACTAAACATCAATTCTTTCATAGTTTTTGGCATTGCCCAAGAAGATTTCAAACCATCGTAATATGTCCCACCATGACCTCATGGTAAAAAAGCACGGTAGGAGAAGATGATCCACTTCTTCAAGCCCTCCTTGTACATGTAATACCGATTGACACACACAACCTTCCGTTTTCTAAGATTTCCCGCTGTCAATATCACCCTCTAGCTGCCAGCAAAGAGAAGAATCACACCTTCCTTGGCACATACGATACCCATATTGCATCACATGGAAACACGTCCTCCATAATCAGATGTTTCTCATAGAAACATTTAAGAGAGAAAACTCCATTATTACCCAAACTCCACCATAGAGCATTCAGGGTTATCCACCGGAGTGACTTGCCTATGTAGAGGGGCCGGAAATCTTGGGAACTAAGTCACCTCTCAATCGTCGAAATTCCTTCCAAATCTTAGATCCCAAAAATTATCTCCACCATAGGCCCACCTAATTTCTTGGACCTTCAATTCTCCTTGACATGACATTCTAAACAAATTCTGAAGATTATCTTTCAGTGAGTTATCTCTACCCAACCTACGTCCCGGGAAATTCTCTCCTTCCATTCCAACCTTGAATGAGATACTTTTGCTAAAATCATCCCATCCCTTCATTATGTTCCTCCACAAACCGCACCCAAAAGGCATAATGACATCTCTAGTTCTCCTAAATCTGCTTCCCACTAGACAAATAGGTCTGTAGTCCTCCATGCACCATGCTCCTCCCTCTTAGGGGTAATGACAACTAATGAAGCATTCAAACTCTTTTCAAATACACCACTTCCCTGGAAGTCAACAACTGTATCTATTAAATCAGATCTAACCATTTTCCTGCAGTGCTCAAAAAAATCCGTAGAGGCATCAGGTGCCAGAGCTTTGTTACTAGCACAACCCTCTACCGCCCTCTTCAACTCTTCCTCCTGAATTTCCCTCTCTAGCCATTCACTCTCCTCCCTGCCAATATGACGAACCCTAAACCCCCCAATTTAGGCCCCCAATCTGCTACCTCTAACAAACGCTTGTAAAAATCTACAATTGCCTTTTCTACTTCCTCCTTTTCCACATGCATCACCCATTTACCTTTTCCGACTATATAAAAGTCCTTCTCCTATTAGCAGTTACTACCCTATGGAAATGTTTTTTGTTGGAGTCCCCCTCTACAACCATTATGACCCTCAAGTTCTGTGTCAAACCAATCTCTTGGGCCAAAGCCAACTCATCTAGCTCCCTTTTCAACCCCTCTAAAATTGTTCTTTCCTCAATTATTACAAGACTAATGACTTAATTCATGTGTAACTTCGTTCAAGGCTTCAAGCTTCAAATTTGCGATGATCATCAAATGGAGAATATTGCCATCTGGTTTTTTGTTTTAGAGGAGGATAAAAAAGTTGGCAAATGGGCTATTCTAGTGGTATGATGTAAGCAACTTTGAAGAACTTGAATGATATTTTATCAGGTAACACCTCTGCCAATTCCTTCTCAACGAAAAAGCACTAAAGCAATTAAAAACAAACGCTGAAGAAATGGAAACAAAAGGAATTTAGAAATGGGAATCTGTGCAACATTTCTAAAGTAAATTTTACTTCATCGTGGAGTACACTGAAACTATTCTTCGAATTTCATAGAAGCGAAACACTTAAACATGGAGGATTTAGAGATGGAAATTTGTCTATTACTATAGCTTAAGATTTACATGGCTTGCGTAGCCCTTTTGTTTGTAAAAGGGTTTGATCTAAAAATTGAAAGGCAAAAATTAGGGTTTTTGGTGTTTTTGCAAACCTGGCTCCTCTTCTCCTCTTCCAATCACGACTCTCTAGCCTTTGAGAGGACGATACCTTCACTGCTACTCAGACCTCTGCATCGCGACTTGGGACTCTCTCAGGTACATTCATCTCTTTTTTTTCCTTCTTCTTCTCTTCTTCTCTGTACTTTTTTTTCAAGCAGTGGCCTTGGGAAATGTTCTTTTTTAATTTATTAGCTATGGCAGGCCCTTGTCGCCTTTCACTGTCCACCCCTCCCTCCAAAAAAAAAGAAAAATAGAAAAAAAAGCAGAGCATGGAGTTAAATTTTAAAAATTATAGGAGGAAAAAATGGAACAACGACATCATAAAAGAAAAGTAAGTGCAAAGAATATGAGTATCACATACAATTTTTTACGAGTTTCACATTGATTAATGGTTGGATAATGTTGAAGCATTTAGTTATTGCTCATTTGAAGAGAGGTTAGAATGCTGCCCTCCTTGGATAACTCTGGCACTTAAGGAAGTAAATTATATTGGATAATGTCGTATCTTAAACAAATTTTATCACAGAAAGCAAATCAAATAACTCGAAGCAAAAGATCCTGCTACGCTGGAATTCATCTTGGTCAACCCGTAAAGGGTTTACACAAAACTGGGGGACATGTAAAAGTATATGCAGCAACAGTAAAGAAACGATTTGCTGGGATTGGATTCCTCCAAATAGAAATAGAAAGACGCTGCAATATTAAAACCCTATGACACACATACTAAATAAGTGTAAGATAGATTGAGCTAGAAATTTAATCAAGATCATGTATTCAGTTTTTAAGGAATAAAGAAGGAGATCATTATTTCTAAAACATGTCGAGATGCACGAGATATCAATCATTAAGAACTAAAGTTACATTTGGAGAAATAAGGTAATAAAGTGAATTACAAAATGGGAGATATCCTATTTCTCGTCTAACAAACATCGTGAAATCATCAAACTGATAATCAGGGGAAACAAATCATCCTTAGCAAAAGTACATCAATATTAATTACATTCTAAAAACCCTAGTTTCATATGGATTGTGATAATGTTGATAAGAGAAAACTCAGATCATGCTCACCTTGTTCAGTCGAGAGGTCCTTTCTAGTTGTTTGATAGATGAACTGGAGTGTAGTTGTAGCTTGAAAACTCATTGGTGCAATGTTTTCATTTGAAGTCACCAACCTCGTTTTTATCACCTCACAACCATTATATTCTGTGAGTTTGGTTACATCTTAAAGTAGCATAATAATAAATGCACAATGAGATGACAAAATCCATGAAAGATTACTCTACGAGTAGAGGTGGATCCAAGATTTAAAGTTTATGGTTCTCATTGATCTTAAATTTTTTAAAAAAACTTTATTTTAAGTGCCTATGGGGAATCGAACCCTCATTGAGGCGGAAAATAAAGATTAAGTTCCATTTTTGCCCCTAGACCATGAGCTTACTTTGTTACTAGAAACAAATAGTTTTTATATATTTAATGGATTTCTCATAATAAAAATAGTGTCTATACAAAAGTTATCGGGTTCGAAAACCGTACCCGATACCCTAGCAAGAACAATAGTGATATAATTGAACAATAAATAATATTACAATTGATACTAATAGTGATATTGATAAGTAAAAGAATGATCAAATAAGGTGCTCTAAGCTCTAACCATGCTCTTCCACAGAAAAAGAGAGAAATCACTGTACTATTTACTTAACCATCTACCCTGATTCTCGACCTTTATATTTTTTTTAATCTAGGGTCATGTCCTCGGTGTGAAGAAAATGTGTTGTGTTATTTCTTATCACTGTCCTAACTGTCGAGGCACTTAGTTTTAGTGACGAGATAACTCTAGAGTCCGTAAATTGAATATAGAGTTGAAAACTTTCAAATTTAGTTCGACTTAAACAAAGTATATAGAGAGCAAGTACAGTGATTAGACATGACACAACACATCTTTATCTCCCCGAGGACATGACCCTAGATAAAAAAAATATAAAGGTTGAGAATCAGGGTAGAGGACTAAGTAATAGTCGAGTGATTTCTCTCTTTTTCTGTGGAAGAGCATGGTTCTAGCTTAGAGCACCTTATTTGATCCTTCTTTTACTTATCAATATCACTATCAGTATCAATTGTAATATTATTTACTGTTCAATTATATCACTATTGTTCTTGATAGGGTATCGGGTACGGGTTCCCGAACCCGGTAACTTTTGTATAGACCCTATATTTATATAGAGAAATCCATTAAATATATAAAAACTATTTGTTTAAGGTAACAAAGTAAGCTCATGGTCTAGAGGCAGAAATGGAACTTACTTAATCTTTATTTCCCGCCTCAGTGAGGGTTCGATTCCCCTTGGGCACTTACAATAATTTTTTTTTTTTTTTTAAATTTAAGAACGATGTGAACCATAAACTTTAAATCTTGCATCCACTTCTACCCGTAGAGTAATCTTTCTTGAATTTTTCATCTCATCGCACATTTATTATTATGCTACTTTAAGATGTAACTGATCTCACTATATATAATGGTTGTGAGATGATAAAACTGAGGTTGGTGACTTTAAATGAACACATTGCACCAAGGAGTTTACGATCGGCAACCGCACTCTTGTAAAGGATGATTTGTTTTCTTTTTTAATCATCATCTTGTTTCCCCCGATTAATGTCCATTTGATGATTTCACAATTTTTGTTAGACGAGAAACATGATATCTCCCATTTTATAATTCACCTTTTACCTTATTTCTTCAAATTTAATTTTAGTTCTTAATGATTGATATGTCGTACATCTCGACATGTTTTAGAAATAAAGATGTGCTTTAACTATTGAATACATGATTAAATTTGTTGCTCAATCTATCTTACACTCATTTGGTATGTGCGCCATTTGGTTTTAATATTCTGCAGTCTTTCTATTTCAATTTGGAGGAATCCAATCCCAGCAAATTGTTTCTCTATGTTTGGTGCATATACTTAAACATGTCCTGCAGTTTTGAGTTTTTCCCCTTTACAAGTTGACCAAGGATAAATTCCGTAGCAAGATCTTTTGCTTCGAGTTATCTGATTTGCTTTTTGTGATATAGTTTGTTTAAGATACCACACTATCCAATGTAATTTAGTTCCTTAAGTGCCAGAGCTATTCAAGAAGGGCAACAATCTAAGCATCTCTTCAAATGAGCAATAGCTAAATGCTATGTTCAATGCAGGTTGGGTGCCCCGGTCATTCAAGTGGTGTTCTGTACAGTCAACAAGGCAGTACTATGTTTGTCTTGTTGCTCATTGACAAATTTAATATGGGTGTCAATTCTTTCAGTTTGTGGTCCTTTCAAGTGGACAAATCTTAAAAAAACAATATAATTGGCAAAGTGACATATTTATTATTATTATTTTTGAATTAGGAATATAGAATTAGAAAATTATAATTTTTTTGTTAAACTTGAATCGGAATCTTAACTGGGTGTTTCACTTAAGAATGGTGTTAACATCCTATGCATTTAGGATTGTCTTTTTGTGTTTACAGTTAACCATTGCATTTATATTTGTCATCTTTTAATCCATTTGCACCACCCTTCACTAACATTCACACTTCAAATATAAAACAAAACACATTCACACTTCAAATATATGCAAAAACAGAACACATTCACACTTAAAATTGCTTATTGCCATGGACAATCTTAGCAGTTTTATACTCTTTTTGCGTTTGACATTGACAATATTATTGCAAATCGTCAGTTACTTAGTTCACTTGTCGCAAGACTCGAACTTCGGACTTTAAGTTGCAAGTTCATCAACTTTTTCCGATTGAACCAAGCCTGAGGGACAATTTTTATTTTTATTTTTGATGAACTTTCTCCTTTGAATCTATTCAATATCATTATGCTCACAAAATAATCCATCAGCAGGACTAATTGTCTATGGCTAATGATGTTATACATCATCAAACTGATTATGCTATGGATTTCTGTTGTGGTTTTATTTCTAATCACAACCCTTTGAACATTGTAGATGAGAAGGGTAAATTTGATGAGTTGATTGAAGAGAAGGGAGTAAAAATACTTATTGATCCTAAGGCATTGATGCACGTGATTGGTACCAAGATGGATTTTGTAGATGATAAATTGAGGTAAGGGATTTACTTGTCCGTTTCTATATTGTTGGTATTAAGCCTTTTAATTTTGTGTACAAGTGGATCATTTTGCTTTTGGATGAAAAGGACTGGAGACACCTAGTTTAAGTAATCTTACATATTTTGAACCCTAATGCCATGTAACATACTCCTTTAGCTGTTCTGATGTCATTGAAAGTCTGATTATTGTTTGTTTATGTGCAAATTATTCTGGGAGTTTTTCCATTATAAGGTTAGTTTTGAGAAATATGAAGTTATCGACTCCAGAAAATCTTAGTATCAAGACTTACTGTTGGATGAGGGAGACAAAAGTCTTGCATCTTCTTGTTTATCTTCTCGTTTATTGGATTGTCAGTTCATGTTAGTTTTTTGGTAAGCATACTATCTATATGTGTTTCTTTGAGCCGAGAGTCTTTCGGAAACAACCTTTCTACCTAACAAAGTAGAAATAAGGTCTGCATACACTCTACCCTCCCCAGACCCCACTTGTGTGACTATACTGGGTATGTTGTTGTTGTTGTTGTACTATCTATCTGTGTTAGTTTCTGCCGATGTCCCTTTCTGGGGGCAGGGGGGTCCAGAAGAGAAACAAAATAATGCTGGGCTCTGAGACAAATTCTTTAAAGATGTTTCGACTTGTCCAAACCTGTCCCTGTTTCATATGGTGTCCTCCGCAAGCAACTCTTGACGCGTTCTTACATTTTATGTGCAGGTCTGAGTTCATTTTTATTAATCCCAACTCGAAAGGGCAATGCGGTTGTGGTGAGTCTTTCATGACAACAGCCAGTAAAGGTGCTGAAAAGTGAGATGATTTTAATGAGACATGATGTTTATAATGTACTCATTAGGTAGGCGAACAATGAAATAAAGATTTATTCCCAGAATTAAAATGTTATATCTTATACATGTCTTTGTATTGTGTTTATTAGATGTAAAAAATTGCCAGTCTTGGCATTTGTATAATCTACTGATACTGATATTACAGAAATGGAAAGAGTAAAATTATCTTGTATCAAAGGTGTC</genome_strand>
        <mrna_strand>GCTAGCAAAGGCGGCGGAGAGAATCGGAAATTCAGTCCGGCGGCAAGCAATAACTATTACAGACGCCGCCGCTGCTCGAATTAGCAATCTCCTTCAGCAACGGCAGCGTCCTTTTCTTAAGCTCGGCGTTAAAGCTCGTGGATGCAACGGCTTATCCTACACGCTCAATTACGCCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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................................................................................................................................................................................................................................................................................................................................................................................................ATGAGAAGGGTAAATTTGATGAGTTGATTGAAGAGAAGGGAGTAAAAATACTTATTGATCCTAAGGCATTGATGCACGTGATTGGTACCAAGATGGATTTTGTAGATGATAAATTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGAGTTCATTTTTATTAATCCCAACTCGAAAGGGCAATGCGGTTGTGGTGAGTCTTTCATGACAACAGCCAGTAAAGGTGCTGAAAAGTGAGATGATTTTAATGAGACATGATGTTTATAATGTACTCATTAGGTAGGCGAACAATGAAATAAAGATTTATTCCCAGAATTAAAATGTTATATCTTATACATGTCTTTGTATTGTGTTTATTAGATGTAAAAAATTGCCAGTCTTGGCATTTGTATAATCTACTGATACTGATATTACAGAAATGGAAAGAGTAAAATTATCTTGTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257190" ref_strand="+" ref_description="SGN-E257190 [cLEG-46-P19]">
      <seq>aaatttcaggtaattatatttacagcccccatctttcaaaagaggaataacaggatccatttgcgttagtgaagaacctccaaaacggatcgatggtgtctccggtgctagcaaaggcggcggagagaatcggaaattcagtccggcggcaagcaataactattacagacgccgccgctgctcgaattagcaatctccttcagcaacggcagcgtccttttcttaagctcggcgttaaagctcgtggatgcaacggcttatcctacacgctcaattacgccgatgagaagggtaaatttgatgagttgattgaagagaagggagtaaaaatacttattgatcctaaggcattgatgcacgtgattggtaccaagatggattttgtagatgataaattgaggtctgagttcatttttattaatcccaactcgaaagggcaatgcggttgtggtgagtctttcatgacaacagccagtaaaggtgctgaaaagtgagatgattttaatgagacatgatgtttataatgtactcattaggtaggcgaacaatgaaataaagatttattcccagaattaaaatgttatatcttatacatgtctttgtattgtgtttattagatgtaaaaaattgccagtcttggcatttgtataatctactgatactgatattacagaaatggaaagagtaaaattatcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="-" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="34013" stop="21806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33713" g_stop="33432" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33431" i_stop="23237" i_length="10195">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23236" g_stop="23119" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="400" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23118" i_stop="22404" i_length="715">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22403" g_stop="22106" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="698" r_length="298" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="-" ref_id="SGN-E257190" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33713" e_stop="33432"/>
          <exon e_start="23236" e_stop="23119"/>
          <exon e_start="22403" e_stop="22106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTCAGGTAATTATATTTACAGCCCCCATCTTTCAAAAGAGGAATAACAGGATCCATTTGCGTTAGTGAAGAACCTCCAAAACGGATCGATGGTGTCTCCGGTGCTAGCAAAGGCGGCGGAGAGAATCGGAAATTCAGTCCGGCGGCAAGCAATAACTATTACAGACGCCGCCGCTGCTCGAATTAGCAATCTCCTTCAGCAACGGCAGCGTCCTTTTCTTAAGCTCGGCGTTAAAGCTCGTGGATGCAACGGCTTATCCTACACGCTCAATTACGCCGGTAAATATCATATTCTGTAATACTATTAACTCATTTTTCATATTTGTATAGATTAATTTTCCTATTCAATAGAACTAATCGAATTCGATCAATTCTGTAGTCACAGTTTTTCTTTTATGATATTAGTATGATGGAAATATGTACCTTAGAAAGTTAGGTCAAAGTCCATACAATTTGATTCTTGAGAAGCGAAACACGACAAGTTAACTTCCGTATTGCACTTCTTTTTGGGCCAAAATTTGTTAGATATGTTGGACCTTTGGTGTAGGTTACCCGAGGCGAATTGAGCATTTTTTTTCGTTGATAAGGTAATTTGTATATAAAGTCAGCATCAAATTGATTGCTTGTTATATTTAAAAGTTACAATCCAGCGTAGTTTCTATATCCATCATATACAGCAGCATTGAGCTTAAGAAATCGAGGTGAATCCAGCATTTAGAGTCAATAGGCTTAGAATACATAACTGCTGGCAAATGTATTACCTGGTTTGATTCGGAAGCAGTGGATTAAGCAAATATATGTTCAACTTATGTGGTAGTCTTTTGGAACCAAATTGTCAAATTTGGTTGATGTTGTCCTACTGCTAGGCGGATATACCATCAAAGCGTGTCAAAAGACTAGCAATGCTCCCTCATCCCAATTTAAGTGTCTTACTTTTCTTTTTGGTATGTCTCGAAAAGAGTGCCTTTTTTTCTTCTTCTATATTTAGTAAGTTATTCCAATTTTAGCATTCTACACGGCAAGCTTAAGATCATAAGATTTAAGAAACTACACACTTCTTTAGTTTAAAACCACAAGATTCAAAAGTCTCCCTTTATTTCCTAGACTTCGTGACTAGTCAAACTAAAGACTCTTAAGTTGGGACGGAGGGAGTCATACATTTGGCCCTTTATTAAATAATGTGGTGTTTGGGTACTTGCTACCTCCCACTAACACATGTTAACTTGATCTTGCCTACTTAATTGACTTATAGGCCACACATTTGAATGCTGTAATTTGTTCATTTATTTATAATCAAAAGAAAAATGATGTAATCTCTGCAGTCAAAGGCGAATCCAGTATTTGAAGACGACGGGTACACCACCAAAGACTAATGCACGTTAGTTAAAGTATGTCACCCAATACTGATTAACTTTATTAAACATAAAAAGCTAAGGTACTAATGTATAAATATGAATTAAATGAGTCTTCTACATAAAGTTTGCTTTGGAGAGTAAAGGTTTTGAATAGTAATTTGCGCCATCAAGTTGCAGTTTAAAACTAGTCATCCCCCTTCTTTTATTCAATACTTTTTAACTTCTCAGATAAAAACAAATAAAGAAACAAAATAAACTATAAATGGGATTTGAACCCAGTCCCTCACCTAGGAGAGCCATTTAAACCACTGCACCCAATCAACTTTAGTATTTTAAGATGCCTAATATAATATATTTCATATCTCAAGGTGTGTATATATATATATATAATTTTTCCCAAAGTTCACGGGATGGTGAAGTAACAAAAAGTAGTGTTTAGACTAGACTAAATATGATTAAGGATGTAACTCTGGCAGACAGTTTCACATGACTATATAACACCTTTCAGCTTCAGAAGAAACTTGTGTAACATTGCTCATCAATCTATTGCAACTCCCGCTTCAAAGACGTCACGCATGGCATCAAAAAGCCTTGGCTTAATGCCTTCGTAACGGAATGGGTATCCCTTTGGATGCTCCTGAAAAAAAAATTGGCACATAAAATTGGTGAGTTGAAGTGGACTGAAACACTGAAAAGTCTTTCTATCCTTATTGTTAAACAAGGAAAATTGTTAATAGCAGATGTGAAGTTAGTTTCCCTTGAGTTTTGAAAAAATTGTTTGTGATCAGTAGTTCCTTTACGGTAATTTCTAAGTACGATATATACTCCTTGAGAAGCATTTCATTGTTGATGAATGTTGACGTTGATATGTTTATCTTAGTTAGGTTGATCCTGCCAAGTGCCAACAGTGTACTTGGGTATGCCTTTAGGAGCTAAATCAAAGTCTAAGGAAATCTGAAATAATGTGGTTGAAAAATGTGAGAAGAAGCTGGCAAGGTGGAAAAGACAGTACTTATCACTAGGGGGTACACAATCATTAGTAGGCTAGACAGAATCAGGAAGAAGTTTGTGGCAAGGAGATAAGGATAGGATACGCTACCACTTGGTCACATGAGGATTTTTGATAATTGACAAGAAGTTTGGGGATAAAGAATTTGAATACTCAAAGTGAAGCACTCAGAAGGAAATGGCTATGGAAGTATTCCAATGACAAAGATACACTGTAGGGGAGAGTCATAGAAGCTAAGTATGAGGAGGAAGACAAATGAACGGTGAAGGAAATTTTAATTCCTTATGGAGTATGGAGATCCATCGGAGATCTCTTGAATGAGCTGAAGTGCTTCTTCAAGATCAAGGTGAACCATGGGGCCAAAACTAGGTTCTGGACAGATGAATGGCACGGAGAAGGCAACTTAGAAAGGCTTTTACCAGATATCTACTCATTTGTACTATACCAACAGGCAACAGAGTGCCATAGTGGAATTATGAACAATTGAGGGATGGAAATTCAATTTTAGAAGGCAATTCAATGATTGAGAAATACTAAGAATGTCAGATTTTATCAGTTGAGCCATTCAGTGGATTGGTAGCAGATGAAGATGAACTATGGTGGAAGGGAAATGAGAAAGGCACATACAAAGTGAGCAAAGCGTATAGGAAAATGAACCACAAGCAGCAGCCGAACAGTTGGCCATGGAAGAACATTTGGAAAACCAAAATACCATATAAAGTGAGCATGCTTTGTGTGGCTCTAGCAAAGGAGGCATTGCTTACCCAAGAGAACCCAATGAAAAAAGGGATAATTTTAAGCCCCAGGTGCTTCTTGTGCGGGGAGCAGGCAGAGACTATAAATCATCTATTTCTATATTGTACAATTACAAGACAACTATGGAGAATGTTTTTGAACCTTAGAGGAATAGGCCGAATAGCACGGAGCATGCCTGGGAAAATTACAGAGGCCATAACAAGCTAGGAAAAAGCTGGGTTTTTGGCCAATAATAGAGGCAGGTGGAGGATAGTCCCACCAAGCATTTGGTGGACAATATGGAAGGAGAGGAATTCTAGGTGTTTTGAGAGCATAGAGAACAATATGCAACATATTAAGTTCAATTGCATCTTGCTATTGTGTTTTTGGTGTAATCAGTTGCTTTTAAATGATCACTGTCTATTATTGATGTTGTAGACACATTATAGACATAGGATCATAGATGTAGGTAGTATTTTGTAAATATGGAGTTACTACAACTCTTCTAAGATTCAGATTCTAACATATATAGACAAAGTTACCAGTTTAAAAAAAAAAGAAAAAATAATGAAGCAGAAAGCACACTTACCAAGGAATATGATATCCACACCCCTGGACGGGCATACGTCATTGAGTTAGTCCTTCTATCCCATTGGACTCCTCGTCTGGCCAACAAAGTTGAAAATAACCAGTATTTTCTCATGAAAATTCTTAGTTTTGCCTTCAGATGATCAACTGAAAGGTGTGGATTCATCCCCTGCATCTGGTTAGTTACGATGCTCCAGCTTTCCTCTTGGAATGTACTTCCAAATTCATAATCTTTGCTGATCACCTTGGCCAACAGTTTGAGAAATTCATACTGTTGTTCTTCTGTCATAACTACATGACCGTTTGGGCCTGGTAGGTCCATCTGCAGTAAAGTAAGGGAAAGTGTACTCATTATGTAGCATTTTCACATCATTATAAAAATAATAGATTGAAACTTTTGTGTGCGTCTCTGTCTGGTTATTTGATAATATGGTTAATCTTTCTAAAATAAATGCTAAGAAGCATCTTGATGCTAACAATTCAATTAGAAAATTTTGAGCATCTTGATCTGCTTAACTATTATTGGCAGAGCAGAGTTAGGCTACTAATATGCTCCTTCCTACAGCTTTGTTTTTTTTGAGCTTAAATGCATTTGAATTTCGAGGCATAAGCTTCATTCGGTATACTAGTGTTGGCCTGTTGGGTATCAACTAATGAGCTACATGATGAAGAAACAGAAAAAAGAGAGATGTTTTAGTTTTGAGTATTTCAGTCATAAACATCGCCAAAGAGCTGGCCGTATACAAGGGGTATACCCAAAAATAAAGAATCTACAATACGTGATTCTTTACAAAATTCACCCATTCTTTTATACACCATGGAGCTTTATGGGTTCACCAAAAGAAAATAAGTGAACGGAGGCTACTCCTCAACTCTTAAAACTCTATACTACCTCTTCAAAAGCTCTTTTATTTCTCCCCCTCCAAACAACCCACACAAGAGGAACCATATTCCATGTCCTACAACTTCTCCAACTAAACATCAATTCTTTCATAGTTTTTGGCATTGCCCAAGAAGATTTCAAACCATCGTAATATGTCCCACCATGACCTCATGGTAAAAAAGCACGGTAGGAGAAGATGATCCACTTCTTCAAGCCCTCCTTGTACATGTAATACCGATTGACACACACAACCTTCCGTTTTCTAAGATTTCCCGCTGTCAATATCACCCTCTAGCTGCCAGCAAAGAGAAGAATCACACCTTCCTTGGCACATACGATACCCATATTGCATCACATGGAAACACGTCCTCCATAATCAGATGTTTCTCATAGAAACATTTAAGAGAGAAAACTCCATTATTACCCAAACTCCACCATAGAGCATTCAGGGTTATCCACCGGAGTGACTTGCCTATGTAGAGGGGCCGGAAATCTTGGGAACTAAGTCACCTCTCAATCGTCGAAATTCCTTCCAAATCTTAGATCCCAAAAATTATCTCCACCATAGGCCCACCTAATTTCTTGGACCTTCAATTCTCCTTGACATGACATTCTAAACAAATTCTGAAGATTATCTTTCAGTGAGTTATCTCTACCCAACCTACGTCCCGGGAAATTCTCTCCTTCCATTCCAACCTTGAATGAGATACTTTTGCTAAAATCATCCCATCCCTTCATTATGTTCCTCCACAAACCGCACCCAAAAGGCATAATGACATCTCTAGTTCTCCTAAATCTGCTTCCCACTAGACAAATAGGTCTGTAGTCCTCCATGCACCATGCTCCTCCCTCTTAGGGGTAATGACAACTAATGAAGCATTCAAACTCTTTTCAAATACACCACTTCCCTGGAAGTCAACAACTGTATCTATTAAATCAGATCTAACCATTTTCCTGCAGTGCTCAAAAAAATCCGTAGAGGCATCAGGTGCCAGAGCTTTGTTACTAGCACAACCCTCTACCGCCCTCTTCAACTCTTCCTCCTGAATTTCCCTCTCTAGCCATTCACTCTCCTCCCTGCCAATATGACGAACCCTAAACCCCCCAATTTAGGCCCCCAATCTGCTACCTCTAACAAACGCTTGTAAAAATCTACAATTGCCTTTTCTACTTCCTCCTTTTCCACATGCATCACCCATTTACCTTTTCCGACTATATAAAAGTCCTTCTCCTATTAGCAGTTACTACCCTATGGAAATGTTTTTTGTTGGAGTCCCCCTCTACAACCATTATGACCCTCAAGTTCTGTGTCAAACCAATCTCTTGGGCCAAAGCCAACTCATCTAGCTCCCTTTTCAACCCCTCTAAAATTGTTCTTTCCTCAATTATTACAAGACTAATGACTTAATTCATGTGTAACTTCGTTCAAGGCTTCAAGCTTCAAATTTGCGATGATCATCAAATGGAGAATATTGCCATCTGGTTTTTTGTTTTAGAGGAGGATAAAAAAGTTGGCAAATGGGCTATTCTAGTGGTATGATGTAAGCAACTTTGAAGAACTTGAATGATATTTTATCAGGTAACACCTCTGCCAATTCCTTCTCAACGAAAAAGCACTAAAGCAATTAAAAACAAACGCTGAAGAAATGGAAACAAAAGGAATTTAGAAATGGGAATCTGTGCAACATTTCTAAAGTAAATTTTACTTCATCGTGGAGTACACTGAAACTATTCTTCGAATTTCATAGAAGCGAAACACTTAAACATGGAGGATTTAGAGATGGAAATTTGTCTATTACTATAGCTTAAGATTTACATGGCTTGCGTAGCCCTTTTGTTTGTAAAAGGGTTTGATCTAAAAATTGAAAGGCAAAAATTAGGGTTTTTGGTGTTTTTGCAAACCTGGCTCCTCTTCTCCTCTTCCAATCACGACTCTCTAGCCTTTGAGAGGACGATACCTTCACTGCTACTCAGACCTCTGCATCGCGACTTGGGACTCTCTCAGGTACATTCATCTCTTTTTTTTCCTTCTTCTTCTCTTCTTCTCTGTACTTTTTTTTCAAGCAGTGGCCTTGGGAAATGTTCTTTTTTAATTTATTAGCTATGGCAGGCCCTTGTCGCCTTTCACTGTCCACCCCTCCCTCCAAAAAAAAAGAAAAATAGAAAAAAAAGCAGAGCATGGAGTTAAATTTTAAAAATTATAGGAGGAAAAAATGGAACAACGACATCATAAAAGAAAAGTAAGTGCAAAGAATATGAGTATCACATACAATTTTTTACGAGTTTCACATTGATTAATGGTTGGATAATGTTGAAGCATTTAGTTATTGCTCATTTGAAGAGAGGTTAGAATGCTGCCCTCCTTGGATAACTCTGGCACTTAAGGAAGTAAATTATATTGGATAATGTCGTATCTTAAACAAATTTTATCACAGAAAGCAAATCAAATAACTCGAAGCAAAAGATCCTGCTACGCTGGAATTCATCTTGGTCAACCCGTAAAGGGTTTACACAAAACTGGGGGACATGTAAAAGTATATGCAGCAACAGTAAAGAAACGATTTGCTGGGATTGGATTCCTCCAAATAGAAATAGAAAGACGCTGCAATATTAAAACCCTATGACACACATACTAAATAAGTGTAAGATAGATTGAGCTAGAAATTTAATCAAGATCATGTATTCAGTTTTTAAGGAATAAAGAAGGAGATCATTATTTCTAAAACATGTCGAGATGCACGAGATATCAATCATTAAGAACTAAAGTTACATTTGGAGAAATAAGGTAATAAAGTGAATTACAAAATGGGAGATATCCTATTTCTCGTCTAACAAACATCGTGAAATCATCAAACTGATAATCAGGGGAAACAAATCATCCTTAGCAAAAGTACATCAATATTAATTACATTCTAAAAACCCTAGTTTCATATGGATTGTGATAATGTTGATAAGAGAAAACTCAGATCATGCTCACCTTGTTCAGTCGAGAGGTCCTTTCTAGTTGTTTGATAGATGAACTGGAGTGTAGTTGTAGCTTGAAAACTCATTGGTGCAATGTTTTCATTTGAAGTCACCAACCTCGTTTTTATCACCTCACAACCATTATATTCTGTGAGTTTGGTTACATCTTAAAGTAGCATAATAATAAATGCACAATGAGATGACAAAATCCATGAAAGATTACTCTACGAGTAGAGGTGGATCCAAGATTTAAAGTTTATGGTTCTCATTGATCTTAAATTTTTTAAAAAAACTTTATTTTAAGTGCCTATGGGGAATCGAACCCTCATTGAGGCGGAAAATAAAGATTAAGTTCCATTTTTGCCCCTAGACCATGAGCTTACTTTGTTACTAGAAACAAATAGTTTTTATATATTTAATGGATTTCTCATAATAAAAATAGTGTCTATACAAAAGTTATCGGGTTCGAAAACCGTACCCGATACCCTAGCAAGAACAATAGTGATATAATTGAACAATAAATAATATTACAATTGATACTAATAGTGATATTGATAAGTAAAAGAATGATCAAATAAGGTGCTCTAAGCTCTAACCATGCTCTTCCACAGAAAAAGAGAGAAATCACTGTACTATTTACTTAACCATCTACCCTGATTCTCGACCTTTATATTTTTTTTAATCTAGGGTCATGTCCTCGGTGTGAAGAAAATGTGTTGTGTTATTTCTTATCACTGTCCTAACTGTCGAGGCACTTAGTTTTAGTGACGAGATAACTCTAGAGTCCGTAAATTGAATATAGAGTTGAAAACTTTCAAATTTAGTTCGACTTAAACAAAGTATATAGAGAGCAAGTACAGTGATTAGACATGACACAACACATCTTTATCTCCCCGAGGACATGACCCTAGATAAAAAAAATATAAAGGTTGAGAATCAGGGTAGAGGACTAAGTAATAGTCGAGTGATTTCTCTCTTTTTCTGTGGAAGAGCATGGTTCTAGCTTAGAGCACCTTATTTGATCCTTCTTTTACTTATCAATATCACTATCAGTATCAATTGTAATATTATTTACTGTTCAATTATATCACTATTGTTCTTGATAGGGTATCGGGTACGGGTTCCCGAACCCGGTAACTTTTGTATAGACCCTATATTTATATAGAGAAATCCATTAAATATATAAAAACTATTTGTTTAAGGTAACAAAGTAAGCTCATGGTCTAGAGGCAGAAATGGAACTTACTTAATCTTTATTTCCCGCCTCAGTGAGGGTTCGATTCCCCTTGGGCACTTACAATAATTTTTTTTTTTTTTTTAAATTTAAGAACGATGTGAACCATAAACTTTAAATCTTGCATCCACTTCTACCCGTAGAGTAATCTTTCTTGAATTTTTCATCTCATCGCACATTTATTATTATGCTACTTTAAGATGTAACTGATCTCACTATATATAATGGTTGTGAGATGATAAAACTGAGGTTGGTGACTTTAAATGAACACATTGCACCAAGGAGTTTACGATCGGCAACCGCACTCTTGTAAAGGATGATTTGTTTTCTTTTTTAATCATCATCTTGTTTCCCCCGATTAATGTCCATTTGATGATTTCACAATTTTTGTTAGACGAGAAACATGATATCTCCCATTTTATAATTCACCTTTTACCTTATTTCTTCAAATTTAATTTTAGTTCTTAATGATTGATATGTCGTACATCTCGACATGTTTTAGAAATAAAGATGTGCTTTAACTATTGAATACATGATTAAATTTGTTGCTCAATCTATCTTACACTCATTTGGTATGTGCGCCATTTGGTTTTAATATTCTGCAGTCTTTCTATTTCAATTTGGAGGAATCCAATCCCAGCAAATTGTTTCTCTATGTTTGGTGCATATACTTAAACATGTCCTGCAGTTTTGAGTTTTTCCCCTTTACAAGTTGACCAAGGATAAATTCCGTAGCAAGATCTTTTGCTTCGAGTTATCTGATTTGCTTTTTGTGATATAGTTTGTTTAAGATACCACACTATCCAATGTAATTTAGTTCCTTAAGTGCCAGAGCTATTCAAGAAGGGCAACAATCTAAGCATCTCTTCAAATGAGCAATAGCTAAATGCTATGTTCAATGCAGGTTGGGTGCCCCGGTCATTCAAGTGGTGTTCTGTACAGTCAACAAGGCAGTACTATGTTTGTCTTGTTGCTCATTGACAAATTTAATATGGGTGTCAATTCTTTCAGTTTGTGGTCCTTTCAAGTGGACAAATCTTAAAAAAACAATATAATTGGCAAAGTGACATATTTATTATTATTATTTTTGAATTAGGAATATAGAATTAGAAAATTATAATTTTTTTGTTAAACTTGAATCGGAATCTTAACTGGGTGTTTCACTTAAGAATGGTGTTAACATCCTATGCATTTAGGATTGTCTTTTTGTGTTTACAGTTAACCATTGCATTTATATTTGTCATCTTTTAATCCATTTGCACCACCCTTCACTAACATTCACACTTCAAATATAAAACAAAACACATTCACACTTCAAATATATGCAAAAACAGAACACATTCACACTTAAAATTGCTTATTGCCATGGACAATCTTAGCAGTTTTATACTCTTTTTGCGTTTGACATTGACAATATTATTGCAAATCGTCAGTTACTTAGTTCACTTGTCGCAAGACTCGAACTTCGGACTTTAAGTTGCAAGTTCATCAACTTTTTCCGATTGAACCAAGCCTGAGGGACAATTTTTATTTTTATTTTTGATGAACTTTCTCCTTTGAATCTATTCAATATCATTATGCTCACAAAATAATCCATCAGCAGGACTAATTGTCTATGGCTAATGATGTTATACATCATCAAACTGATTATGCTATGGATTTCTGTTGTGGTTTTATTTCTAATCACAACCCTTTGAACATTGTAGATGAGAAGGGTAAATTTGATGAGTTGATTGAAGAGAAGGGAGTAAAAATACTTATTGATCCTAAGGCATTGATGCACGTGATTGGTACCAAGATGGATTTTGTAGATGATAAATTGAGGTAAGGGATTTACTTGTCCGTTTCTATATTGTTGGTATTAAGCCTTTTAATTTTGTGTACAAGTGGATCATTTTGCTTTTGGATGAAAAGGACTGGAGACACCTAGTTTAAGTAATCTTACATATTTTGAACCCTAATGCCATGTAACATACTCCTTTAGCTGTTCTGATGTCATTGAAAGTCTGATTATTGTTTGTTTATGTGCAAATTATTCTGGGAGTTTTTCCATTATAAGGTTAGTTTTGAGAAATATGAAGTTATCGACTCCAGAAAATCTTAGTATCAAGACTTACTGTTGGATGAGGGAGACAAAAGTCTTGCATCTTCTTGTTTATCTTCTCGTTTATTGGATTGTCAGTTCATGTTAGTTTTTTGGTAAGCATACTATCTATATGTGTTTCTTTGAGCCGAGAGTCTTTCGGAAACAACCTTTCTACCTAACAAAGTAGAAATAAGGTCTGCATACACTCTACCCTCCCCAGACCCCACTTGTGTGACTATACTGGGTATGTTGTTGTTGTTGTTGTACTATCTATCTGTGTTAGTTTCTGCCGATGTCCCTTTCTGGGGGCAGGGGGGTCCAGAAGAGAAACAAAATAATGCTGGGCTCTGAGACAAATTCTTTAAAGATGTTTCGACTTGTCCAAACCTGTCCCTGTTTCATATGGTGTCCTCCGCAAGCAACTCTTGACGCGTTCTTACATTTTATGTGCAGGTCTGAGTTCATTTTTATTAATCCCAACTCGAAAGGGCAATGCGGTTGTGGTGAGTCTTTCATGACAACAGCCAGTAAAGGTGCTGAAAAGTGAGATGATTTTAATGAGACATGATGTTTATAATGTACTCATTAGGTAGGCGAACAATGAAATAAAGATTTATTCCCAGAATTAAAATGTTATATCTTATACATGTCTTTGTATTGTGTTTATTAGATGTAAAAAATTGCCAGTCTTGGCATTTGTATAATCTACTGATACTGATATTACAGAAATGGAAAGAGTAAAATTATCTTG</genome_strand>
        <mrna_strand>AAATTTCAGGTAATTATATTTACAGCCCCCATCTTTCAAAAGAGGAATAACAGGATCCATTTGCGTTAGTGAAGAACCTCCAAAACGGATCGATGGTGTCTCCGGTGCTAGCAAAGGCGGCGGAGAGAATCGGAAATTCAGTCCGGCGGCAAGCAATAACTATTACAGACGCCGCCGCTGCTCGAATTAGCAATCTCCTTCAGCAACGGCAGCGTCCTTTTCTTAAGCTCGGCGTTAAAGCTCGTGGATGCAACGGCTTATCCTACACGCTCAATTACGCCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGAAGGGTAAATTTGATGAGTTGATTGAAGAGAAGGGAGTAAAAATACTTATTGATCCTAAGGCATTGATGCACGTGATTGGTACCAAGATGGATTTTGTAGATGATAAATTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGAGTTCATTTTTATTAATCCCAACTCGAAAGGGCAATGCGGTTGTGGTGAGTCTTTCATGACAACAGCCAGTAAAGGTGCTGAAAAGTGAGATGATTTTAATGAGACATGATGTTTATAATGTACTCATTAGGTAGGCGAACAATGAAATAAAGATTTATTCCCAGAATTAAAATGTTATATCTTATACATGTCTTTGTATTGTGTTTATTAGATGTAAAAAATTGCCAGTCTTGGCATTTGTATAATCTACTGATACTGATATTACAGAAATGGAAAGAGTAAAATTATCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268561" ref_strand="-" ref_description="SGN-E268561 [cLEI-13-B3]">
      <seq>tgcacgtgattggtaccaagatggattttgtagatgataaattgaggtctgagttcatttttattaatcccaactcgaaagggcaatgcggttgtggtgagtctttcatgacaacagccagtaaaggtgctgaaaagtgagatgattttaatgagacatgatgtttataatgtactcattaggtaggcgaacaatgaaataaagatttattcccagaattaaaatgttatatcttatacatgtctttgaattgtgtttattagatgtaaaaaattgccagtcttggcatttgtataatctactcccgctgatattccagaaatggaaagagtaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="-" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="23464" stop="21813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23164" g_stop="23119" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23118" i_stop="22404" i_length="715">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22403" g_stop="22113" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="337" r_length="291" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="-" ref_id="SGN-E268561" ref_strand="-">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268561" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="23164" e_stop="23119"/>
          <exon e_start="22403" e_stop="22113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCACGTGATTGGTACCAAGATGGATTTTGTAGATGATAAATTGAGGTAAGGGATTTACTTGTCCGTTTCTATATTGTTGGTATTAAGCCTTTTAATTTTGTGTACAAGTGGATCATTTTGCTTTTGGATGAAAAGGACTGGAGACACCTAGTTTAAGTAATCTTACATATTTTGAACCCTAATGCCATGTAACATACTCCTTTAGCTGTTCTGATGTCATTGAAAGTCTGATTATTGTTTGTTTATGTGCAAATTATTCTGGGAGTTTTTCCATTATAAGGTTAGTTTTGAGAAATATGAAGTTATCGACTCCAGAAAATCTTAGTATCAAGACTTACTGTTGGATGAGGGAGACAAAAGTCTTGCATCTTCTTGTTTATCTTCTCGTTTATTGGATTGTCAGTTCATGTTAGTTTTTTGGTAAGCATACTATCTATATGTGTTTCTTTGAGCCGAGAGTCTTTCGGAAACAACCTTTCTACCTAACAAAGTAGAAATAAGGTCTGCATACACTCTACCCTCCCCAGACCCCACTTGTGTGACTATACTGGGTATGTTGTTGTTGTTGTTGTACTATCTATCTGTGTTAGTTTCTGCCGATGTCCCTTTCTGGGGGCAGGGGGGTCCAGAAGAGAAACAAAATAATGCTGGGCTCTGAGACAAATTCTTTAAAGATGTTTCGACTTGTCCAAACCTGTCCCTGTTTCATATGGTGTCCTCCGCAAGCAACTCTTGACGCGTTCTTACATTTTATGTGCAGGTCTGAGTTCATTTTTATTAATCCCAACTCGAAAGGGCAATGCGGTTGTGGTGAGTCTTTCATGACAACAGCCAGTAAAGGTGCTGAAAAGTGAGATGATTTTAATGAGACATGATGTTTATAATGTACTCATTAGGTAGGCGAACAATGAAATAAAGATTTATTCCCAGAATTAAAATGTTATATCTTATACATGTCTTTGTATTGTGTTTATTAGATGTAAAAAATTGCCAGTCTTGGCATTTGTATAATCTACTGATACTGATATTACAGAAATGGAAAGAGTAAAAT</genome_strand>
        <mrna_strand>TGCACGTGATTGGTACCAAGATGGATTTTGTAGATGATAAATTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGAGTTCATTTTTATTAATCCCAACTCGAAAGGGCAATGCGGTTGTGGTGAGTCTTTCATGACAACAGCCAGTAAAGGTGCTGAAAAGTGAGATGATTTTAATGAGACATGATGTTTATAATGTACTCATTAGGTAGGCGAACAATGAAATAAAGATTTATTCCCAGAATTAAAATGTTATATCTTATACATGTCTTTGAATTGTGTTTATTAGATGTAAAAAATTGCCAGTCTTGGCATTTGTATAATCTACTCCCGCTGATATTCCAGAAATGGAAAGAGTAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283057" ref_strand="+" ref_description="SGN-E283057 [cLER-17-B18]">
      <seq>tgctagcaaaggcggcggagagaatcggaaattcagtccggcggccagcaataactattacagacgccgccgctgctcgaattagcaatctccttcagcaacggcagcgtccttttcttaagctcggcgttaaagctcgtggatgcaacggcttatcctacacgctcaattacgccgatgagaagggtaaatttgatgagttgattgaagagaagggagtaaaaatacttattgatcctaaggcattgatgcacgtgattggtaccaagatggattttgtagatgataaattgaggcctgagttcatttttattaatcccaactcgaaagggcaatgcggttgtggtgagtctttcatgacaacagccagtaaaggtgctgaaaagtgagatgattttaatgagacatgatgtttataatgtactcattaggtaggcgaacaatgaaataaagatttattcccagaattaaaatgttatatcttatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="-" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="33908" stop="21911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33608" g_stop="33432" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33431" i_stop="23237" i_length="10195">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23236" g_stop="23119" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="295" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23118" i_stop="22404" i_length="715">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22403" g_stop="22211" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="488" r_length="193" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="-" ref_id="SGN-E283057" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33608" e_stop="33432"/>
          <exon e_start="23236" e_stop="23119"/>
          <exon e_start="22403" e_stop="22211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTAGCAAAGGCGGCGGAGAGAATCGGAAATTCAGTCCGGCGGCAAGCAATAACTATTACAGACGCCGCCGCTGCTCGAATTAGCAATCTCCTTCAGCAACGGCAGCGTCCTTTTCTTAAGCTCGGCGTTAAAGCTCGTGGATGCAACGGCTTATCCTACACGCTCAATTACGCCGGTAAATATCATATTCTGTAATACTATTAACTCATTTTTCATATTTGTATAGATTAATTTTCCTATTCAATAGAACTAATCGAATTCGATCAATTCTGTAGTCACAGTTTTTCTTTTATGATATTAGTATGATGGAAATATGTACCTTAGAAAGTTAGGTCAAAGTCCATACAATTTGATTCTTGAGAAGCGAAACACGACAAGTTAACTTCCGTATTGCACTTCTTTTTGGGCCAAAATTTGTTAGATATGTTGGACCTTTGGTGTAGGTTACCCGAGGCGAATTGAGCATTTTTTTTCGTTGATAAGGTAATTTGTATATAAAGTCAGCATCAAATTGATTGCTTGTTATATTTAAAAGTTACAATCCAGCGTAGTTTCTATATCCATCATATACAGCAGCATTGAGCTTAAGAAATCGAGGTGAATCCAGCATTTAGAGTCAATAGGCTTAGAATACATAACTGCTGGCAAATGTATTACCTGGTTTGATTCGGAAGCAGTGGATTAAGCAAATATATGTTCAACTTATGTGGTAGTCTTTTGGAACCAAATTGTCAAATTTGGTTGATGTTGTCCTACTGCTAGGCGGATATACCATCAAAGCGTGTCAAAAGACTAGCAATGCTCCCTCATCCCAATTTAAGTGTCTTACTTTTCTTTTTGGTATGTCTCGAAAAGAGTGCCTTTTTTTCTTCTTCTATATTTAGTAAGTTATTCCAATTTTAGCATTCTACACGGCAAGCTTAAGATCATAAGATTTAAGAAACTACACACTTCTTTAGTTTAAAACCACAAGATTCAAAAGTCTCCCTTTATTTCCTAGACTTCGTGACTAGTCAAACTAAAGACTCTTAAGTTGGGACGGAGGGAGTCATACATTTGGCCCTTTATTAAATAATGTGGTGTTTGGGTACTTGCTACCTCCCACTAACACATGTTAACTTGATCTTGCCTACTTAATTGACTTATAGGCCACACATTTGAATGCTGTAATTTGTTCATTTATTTATAATCAAAAGAAAAATGATGTAATCTCTGCAGTCAAAGGCGAATCCAGTATTTGAAGACGACGGGTACACCACCAAAGACTAATGCACGTTAGTTAAAGTATGTCACCCAATACTGATTAACTTTATTAAACATAAAAAGCTAAGGTACTAATGTATAAATATGAATTAAATGAGTCTTCTACATAAAGTTTGCTTTGGAGAGTAAAGGTTTTGAATAGTAATTTGCGCCATCAAGTTGCAGTTTAAAACTAGTCATCCCCCTTCTTTTATTCAATACTTTTTAACTTCTCAGATAAAAACAAATAAAGAAACAAAATAAACTATAAATGGGATTTGAACCCAGTCCCTCACCTAGGAGAGCCATTTAAACCACTGCACCCAATCAACTTTAGTATTTTAAGATGCCTAATATAATATATTTCATATCTCAAGGTGTGTATATATATATATATAATTTTTCCCAAAGTTCACGGGATGGTGAAGTAACAAAAAGTAGTGTTTAGACTAGACTAAATATGATTAAGGATGTAACTCTGGCAGACAGTTTCACATGACTATATAACACCTTTCAGCTTCAGAAGAAACTTGTGTAACATTGCTCATCAATCTATTGCAACTCCCGCTTCAAAGACGTCACGCATGGCATCAAAAAGCCTTGGCTTAATGCCTTCGTAACGGAATGGGTATCCCTTTGGATGCTCCTGAAAAAAAAATTGGCACATAAAATTGGTGAGTTGAAGTGGACTGAAACACTGAAAAGTCTTTCTATCCTTATTGTTAAACAAGGAAAATTGTTAATAGCAGATGTGAAGTTAGTTTCCCTTGAGTTTTGAAAAAATTGTTTGTGATCAGTAGTTCCTTTACGGTAATTTCTAAGTACGATATATACTCCTTGAGAAGCATTTCATTGTTGATGAATGTTGACGTTGATATGTTTATCTTAGTTAGGTTGATCCTGCCAAGTGCCAACAGTGTACTTGGGTATGCCTTTAGGAGCTAAATCAAAGTCTAAGGAAATCTGAAATAATGTGGTTGAAAAATGTGAGAAGAAGCTGGCAAGGTGGAAAAGACAGTACTTATCACTAGGGGGTACACAATCATTAGTAGGCTAGACAGAATCAGGAAGAAGTTTGTGGCAAGGAGATAAGGATAGGATACGCTACCACTTGGTCACATGAGGATTTTTGATAATTGACAAGAAGTTTGGGGATAAAGAATTTGAATACTCAAAGTGAAGCACTCAGAAGGAAATGGCTATGGAAGTATTCCAATGACAAAGATACACTGTAGGGGAGAGTCATAGAAGCTAAGTATGAGGAGGAAGACAAATGAACGGTGAAGGAAATTTTAATTCCTTATGGAGTATGGAGATCCATCGGAGATCTCTTGAATGAGCTGAAGTGCTTCTTCAAGATCAAGGTGAACCATGGGGCCAAAACTAGGTTCTGGACAGATGAATGGCACGGAGAAGGCAACTTAGAAAGGCTTTTACCAGATATCTACTCATTTGTACTATACCAACAGGCAACAGAGTGCCATAGTGGAATTATGAACAATTGAGGGATGGAAATTCAATTTTAGAAGGCAATTCAATGATTGAGAAATACTAAGAATGTCAGATTTTATCAGTTGAGCCATTCAGTGGATTGGTAGCAGATGAAGATGAACTATGGTGGAAGGGAAATGAGAAAGGCACATACAAAGTGAGCAAAGCGTATAGGAAAATGAACCACAAGCAGCAGCCGAACAGTTGGCCATGGAAGAACATTTGGAAAACCAAAATACCATATAAAGTGAGCATGCTTTGTGTGGCTCTAGCAAAGGAGGCATTGCTTACCCAAGAGAACCCAATGAAAAAAGGGATAATTTTAAGCCCCAGGTGCTTCTTGTGCGGGGAGCAGGCAGAGACTATAAATCATCTATTTCTATATTGTACAATTACAAGACAACTATGGAGAATGTTTTTGAACCTTAGAGGAATAGGCCGAATAGCACGGAGCATGCCTGGGAAAATTACAGAGGCCATAACAAGCTAGGAAAAAGCTGGGTTTTTGGCCAATAATAGAGGCAGGTGGAGGATAGTCCCACCAAGCATTTGGTGGACAATATGGAAGGAGAGGAATTCTAGGTGTTTTGAGAGCATAGAGAACAATATGCAACATATTAAGTTCAATTGCATCTTGCTATTGTGTTTTTGGTGTAATCAGTTGCTTTTAAATGATCACTGTCTATTATTGATGTTGTAGACACATTATAGACATAGGATCATAGATGTAGGTAGTATTTTGTAAATATGGAGTTACTACAACTCTTCTAAGATTCAGATTCTAACATATATAGACAAAGTTACCAGTTTAAAAAAAAAAGAAAAAATAATGAAGCAGAAAGCACACTTACCAAGGAATATGATATCCACACCCCTGGACGGGCATACGTCATTGAGTTAGTCCTTCTATCCCATTGGACTCCTCGTCTGGCCAACAAAGTTGAAAATAACCAGTATTTTCTCATGAAAATTCTTAGTTTTGCCTTCAGATGATCAACTGAAAGGTGTGGATTCATCCCCTGCATCTGGTTAGTTACGATGCTCCAGCTTTCCTCTTGGAATGTACTTCCAAATTCATAATCTTTGCTGATCACCTTGGCCAACAGTTTGAGAAATTCATACTGTTGTTCTTCTGTCATAACTACATGACCGTTTGGGCCTGGTAGGTCCATCTGCAGTAAAGTAAGGGAAAGTGTACTCATTATGTAGCATTTTCACATCATTATAAAAATAATAGATTGAAACTTTTGTGTGCGTCTCTGTCTGGTTATTTGATAATATGGTTAATCTTTCTAAAATAAATGCTAAGAAGCATCTTGATGCTAACAATTCAATTAGAAAATTTTGAGCATCTTGATCTGCTTAACTATTATTGGCAGAGCAGAGTTAGGCTACTAATATGCTCCTTCCTACAGCTTTGTTTTTTTTGAGCTTAAATGCATTTGAATTTCGAGGCATAAGCTTCATTCGGTATACTAGTGTTGGCCTGTTGGGTATCAACTAATGAGCTACATGATGAAGAAACAGAAAAAAGAGAGATGTTTTAGTTTTGAGTATTTCAGTCATAAACATCGCCAAAGAGCTGGCCGTATACAAGGGGTATACCCAAAAATAAAGAATCTACAATACGTGATTCTTTACAAAATTCACCCATTCTTTTATACACCATGGAGCTTTATGGGTTCACCAAAAGAAAATAAGTGAACGGAGGCTACTCCTCAACTCTTAAAACTCTATACTACCTCTTCAAAAGCTCTTTTATTTCTCCCCCTCCAAACAACCCACACAAGAGGAACCATATTCCATGTCCTACAACTTCTCCAACTAAACATCAATTCTTTCATAGTTTTTGGCATTGCCCAAGAAGATTTCAAACCATCGTAATATGTCCCACCATGACCTCATGGTAAAAAAGCACGGTAGGAGAAGATGATCCACTTCTTCAAGCCCTCCTTGTACATGTAATACCGATTGACACACACAACCTTCCGTTTTCTAAGATTTCCCGCTGTCAATATCACCCTCTAGCTGCCAGCAAAGAGAAGAATCACACCTTCCTTGGCACATACGATACCCATATTGCATCACATGGAAACACGTCCTCCATAATCAGATGTTTCTCATAGAAACATTTAAGAGAGAAAACTCCATTATTACCCAAACTCCACCATAGAGCATTCAGGGTTATCCACCGGAGTGACTTGCCTATGTAGAGGGGCCGGAAATCTTGGGAACTAAGTCACCTCTCAATCGTCGAAATTCCTTCCAAATCTTAGATCCCAAAAATTATCTCCACCATAGGCCCACCTAATTTCTTGGACCTTCAATTCTCCTTGACATGACATTCTAAACAAATTCTGAAGATTATCTTTCAGTGAGTTATCTCTACCCAACCTACGTCCCGGGAAATTCTCTCCTTCCATTCCAACCTTGAATGAGATACTTTTGCTAAAATCATCCCATCCCTTCATTATGTTCCTCCACAAACCGCACCCAAAAGGCATAATGACATCTCTAGTTCTCCTAAATCTGCTTCCCACTAGACAAATAGGTCTGTAGTCCTCCATGCACCATGCTCCTCCCTCTTAGGGGTAATGACAACTAATGAAGCATTCAAACTCTTTTCAAATACACCACTTCCCTGGAAGTCAACAACTGTATCTATTAAATCAGATCTAACCATTTTCCTGCAGTGCTCAAAAAAATCCGTAGAGGCATCAGGTGCCAGAGCTTTGTTACTAGCACAACCCTCTACCGCCCTCTTCAACTCTTCCTCCTGAATTTCCCTCTCTAGCCATTCACTCTCCTCCCTGCCAATATGACGAACCCTAAACCCCCCAATTTAGGCCCCCAATCTGCTACCTCTAACAAACGCTTGTAAAAATCTACAATTGCCTTTTCTACTTCCTCCTTTTCCACATGCATCACCCATTTACCTTTTCCGACTATATAAAAGTCCTTCTCCTATTAGCAGTTACTACCCTATGGAAATGTTTTTTGTTGGAGTCCCCCTCTACAACCATTATGACCCTCAAGTTCTGTGTCAAACCAATCTCTTGGGCCAAAGCCAACTCATCTAGCTCCCTTTTCAACCCCTCTAAAATTGTTCTTTCCTCAATTATTACAAGACTAATGACTTAATTCATGTGTAACTTCGTTCAAGGCTTCAAGCTTCAAATTTGCGATGATCATCAAATGGAGAATATTGCCATCTGGTTTTTTGTTTTAGAGGAGGATAAAAAAGTTGGCAAATGGGCTATTCTAGTGGTATGATGTAAGCAACTTTGAAGAACTTGAATGATATTTTATCAGGTAACACCTCTGCCAATTCCTTCTCAACGAAAAAGCACTAAAGCAATTAAAAACAAACGCTGAAGAAATGGAAACAAAAGGAATTTAGAAATGGGAATCTGTGCAACATTTCTAAAGTAAATTTTACTTCATCGTGGAGTACACTGAAACTATTCTTCGAATTTCATAGAAGCGAAACACTTAAACATGGAGGATTTAGAGATGGAAATTTGTCTATTACTATAGCTTAAGATTTACATGGCTTGCGTAGCCCTTTTGTTTGTAAAAGGGTTTGATCTAAAAATTGAAAGGCAAAAATTAGGGTTTTTGGTGTTTTTGCAAACCTGGCTCCTCTTCTCCTCTTCCAATCACGACTCTCTAGCCTTTGAGAGGACGATACCTTCACTGCTACTCAGACCTCTGCATCGCGACTTGGGACTCTCTCAGGTACATTCATCTCTTTTTTTTCCTTCTTCTTCTCTTCTTCTCTGTACTTTTTTTTCAAGCAGTGGCCTTGGGAAATGTTCTTTTTTAATTTATTAGCTATGGCAGGCCCTTGTCGCCTTTCACTGTCCACCCCTCCCTCCAAAAAAAAAGAAAAATAGAAAAAAAAGCAGAGCATGGAGTTAAATTTTAAAAATTATAGGAGGAAAAAATGGAACAACGACATCATAAAAGAAAAGTAAGTGCAAAGAATATGAGTATCACATACAATTTTTTACGAGTTTCACATTGATTAATGGTTGGATAATGTTGAAGCATTTAGTTATTGCTCATTTGAAGAGAGGTTAGAATGCTGCCCTCCTTGGATAACTCTGGCACTTAAGGAAGTAAATTATATTGGATAATGTCGTATCTTAAACAAATTTTATCACAGAAAGCAAATCAAATAACTCGAAGCAAAAGATCCTGCTACGCTGGAATTCATCTTGGTCAACCCGTAAAGGGTTTACACAAAACTGGGGGACATGTAAAAGTATATGCAGCAACAGTAAAGAAACGATTTGCTGGGATTGGATTCCTCCAAATAGAAATAGAAAGACGCTGCAATATTAAAACCCTATGACACACATACTAAATAAGTGTAAGATAGATTGAGCTAGAAATTTAATCAAGATCATGTATTCAGTTTTTAAGGAATAAAGAAGGAGATCATTATTTCTAAAACATGTCGAGATGCACGAGATATCAATCATTAAGAACTAAAGTTACATTTGGAGAAATAAGGTAATAAAGTGAATTACAAAATGGGAGATATCCTATTTCTCGTCTAACAAACATCGTGAAATCATCAAACTGATAATCAGGGGAAACAAATCATCCTTAGCAAAAGTACATCAATATTAATTACATTCTAAAAACCCTAGTTTCATATGGATTGTGATAATGTTGATAAGAGAAAACTCAGATCATGCTCACCTTGTTCAGTCGAGAGGTCCTTTCTAGTTGTTTGATAGATGAACTGGAGTGTAGTTGTAGCTTGAAAACTCATTGGTGCAATGTTTTCATTTGAAGTCACCAACCTCGTTTTTATCACCTCACAACCATTATATTCTGTGAGTTTGGTTACATCTTAAAGTAGCATAATAATAAATGCACAATGAGATGACAAAATCCATGAAAGATTACTCTACGAGTAGAGGTGGATCCAAGATTTAAAGTTTATGGTTCTCATTGATCTTAAATTTTTTAAAAAAACTTTATTTTAAGTGCCTATGGGGAATCGAACCCTCATTGAGGCGGAAAATAAAGATTAAGTTCCATTTTTGCCCCTAGACCATGAGCTTACTTTGTTACTAGAAACAAATAGTTTTTATATATTTAATGGATTTCTCATAATAAAAATAGTGTCTATACAAAAGTTATCGGGTTCGAAAACCGTACCCGATACCCTAGCAAGAACAATAGTGATATAATTGAACAATAAATAATATTACAATTGATACTAATAGTGATATTGATAAGTAAAAGAATGATCAAATAAGGTGCTCTAAGCTCTAACCATGCTCTTCCACAGAAAAAGAGAGAAATCACTGTACTATTTACTTAACCATCTACCCTGATTCTCGACCTTTATATTTTTTTTAATCTAGGGTCATGTCCTCGGTGTGAAGAAAATGTGTTGTGTTATTTCTTATCACTGTCCTAACTGTCGAGGCACTTAGTTTTAGTGACGAGATAACTCTAGAGTCCGTAAATTGAATATAGAGTTGAAAACTTTCAAATTTAGTTCGACTTAAACAAAGTATATAGAGAGCAAGTACAGTGATTAGACATGACACAACACATCTTTATCTCCCCGAGGACATGACCCTAGATAAAAAAAATATAAAGGTTGAGAATCAGGGTAGAGGACTAAGTAATAGTCGAGTGATTTCTCTCTTTTTCTGTGGAAGAGCATGGTTCTAGCTTAGAGCACCTTATTTGATCCTTCTTTTACTTATCAATATCACTATCAGTATCAATTGTAATATTATTTACTGTTCAATTATATCACTATTGTTCTTGATAGGGTATCGGGTACGGGTTCCCGAACCCGGTAACTTTTGTATAGACCCTATATTTATATAGAGAAATCCATTAAATATATAAAAACTATTTGTTTAAGGTAACAAAGTAAGCTCATGGTCTAGAGGCAGAAATGGAACTTACTTAATCTTTATTTCCCGCCTCAGTGAGGGTTCGATTCCCCTTGGGCACTTACAATAATTTTTTTTTTTTTTTTAAATTTAAGAACGATGTGAACCATAAACTTTAAATCTTGCATCCACTTCTACCCGTAGAGTAATCTTTCTTGAATTTTTCATCTCATCGCACATTTATTATTATGCTACTTTAAGATGTAACTGATCTCACTATATATAATGGTTGTGAGATGATAAAACTGAGGTTGGTGACTTTAAATGAACACATTGCACCAAGGAGTTTACGATCGGCAACCGCACTCTTGTAAAGGATGATTTGTTTTCTTTTTTAATCATCATCTTGTTTCCCCCGATTAATGTCCATTTGATGATTTCACAATTTTTGTTAGACGAGAAACATGATATCTCCCATTTTATAATTCACCTTTTACCTTATTTCTTCAAATTTAATTTTAGTTCTTAATGATTGATATGTCGTACATCTCGACATGTTTTAGAAATAAAGATGTGCTTTAACTATTGAATACATGATTAAATTTGTTGCTCAATCTATCTTACACTCATTTGGTATGTGCGCCATTTGGTTTTAATATTCTGCAGTCTTTCTATTTCAATTTGGAGGAATCCAATCCCAGCAAATTGTTTCTCTATGTTTGGTGCATATACTTAAACATGTCCTGCAGTTTTGAGTTTTTCCCCTTTACAAGTTGACCAAGGATAAATTCCGTAGCAAGATCTTTTGCTTCGAGTTATCTGATTTGCTTTTTGTGATATAGTTTGTTTAAGATACCACACTATCCAATGTAATTTAGTTCCTTAAGTGCCAGAGCTATTCAAGAAGGGCAACAATCTAAGCATCTCTTCAAATGAGCAATAGCTAAATGCTATGTTCAATGCAGGTTGGGTGCCCCGGTCATTCAAGTGGTGTTCTGTACAGTCAACAAGGCAGTACTATGTTTGTCTTGTTGCTCATTGACAAATTTAATATGGGTGTCAATTCTTTCAGTTTGTGGTCCTTTCAAGTGGACAAATCTTAAAAAAACAATATAATTGGCAAAGTGACATATTTATTATTATTATTTTTGAATTAGGAATATAGAATTAGAAAATTATAATTTTTTTGTTAAACTTGAATCGGAATCTTAACTGGGTGTTTCACTTAAGAATGGTGTTAACATCCTATGCATTTAGGATTGTCTTTTTGTGTTTACAGTTAACCATTGCATTTATATTTGTCATCTTTTAATCCATTTGCACCACCCTTCACTAACATTCACACTTCAAATATAAAACAAAACACATTCACACTTCAAATATATGCAAAAACAGAACACATTCACACTTAAAATTGCTTATTGCCATGGACAATCTTAGCAGTTTTATACTCTTTTTGCGTTTGACATTGACAATATTATTGCAAATCGTCAGTTACTTAGTTCACTTGTCGCAAGACTCGAACTTCGGACTTTAAGTTGCAAGTTCATCAACTTTTTCCGATTGAACCAAGCCTGAGGGACAATTTTTATTTTTATTTTTGATGAACTTTCTCCTTTGAATCTATTCAATATCATTATGCTCACAAAATAATCCATCAGCAGGACTAATTGTCTATGGCTAATGATGTTATACATCATCAAACTGATTATGCTATGGATTTCTGTTGTGGTTTTATTTCTAATCACAACCCTTTGAACATTGTAGATGAGAAGGGTAAATTTGATGAGTTGATTGAAGAGAAGGGAGTAAAAATACTTATTGATCCTAAGGCATTGATGCACGTGATTGGTACCAAGATGGATTTTGTAGATGATAAATTGAGGTAAGGGATTTACTTGTCCGTTTCTATATTGTTGGTATTAAGCCTTTTAATTTTGTGTACAAGTGGATCATTTTGCTTTTGGATGAAAAGGACTGGAGACACCTAGTTTAAGTAATCTTACATATTTTGAACCCTAATGCCATGTAACATACTCCTTTAGCTGTTCTGATGTCATTGAAAGTCTGATTATTGTTTGTTTATGTGCAAATTATTCTGGGAGTTTTTCCATTATAAGGTTAGTTTTGAGAAATATGAAGTTATCGACTCCAGAAAATCTTAGTATCAAGACTTACTGTTGGATGAGGGAGACAAAAGTCTTGCATCTTCTTGTTTATCTTCTCGTTTATTGGATTGTCAGTTCATGTTAGTTTTTTGGTAAGCATACTATCTATATGTGTTTCTTTGAGCCGAGAGTCTTTCGGAAACAACCTTTCTACCTAACAAAGTAGAAATAAGGTCTGCATACACTCTACCCTCCCCAGACCCCACTTGTGTGACTATACTGGGTATGTTGTTGTTGTTGTTGTACTATCTATCTGTGTTAGTTTCTGCCGATGTCCCTTTCTGGGGGCAGGGGGGTCCAGAAGAGAAACAAAATAATGCTGGGCTCTGAGACAAATTCTTTAAAGATGTTTCGACTTGTCCAAACCTGTCCCTGTTTCATATGGTGTCCTCCGCAAGCAACTCTTGACGCGTTCTTACATTTTATGTGCAGGTCTGAGTTCATTTTTATTAATCCCAACTCGAAAGGGCAATGCGGTTGTGGTGAGTCTTTCATGACAACAGCCAGTAAAGGTGCTGAAAAGTGAGATGATTTTAATGAGACATGATGTTTATAATGTACTCATTAGGTAGGCGAACAATGAAATAAAGATTTATTCCCAGAATTAAAATGTTATATCTTATAC</genome_strand>
        <mrna_strand>TGCTAGCAAAGGCGGCGGAGAGAATCGGAAATTCAGTCCGGCGGCCAGCAATAACTATTACAGACGCCGCCGCTGCTCGAATTAGCAATCTCCTTCAGCAACGGCAGCGTCCTTTTCTTAAGCTCGGCGTTAAAGCTCGTGGATGCAACGGCTTATCCTACACGCTCAATTACGCCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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.................................................................................................................................................................................................................................................................................................................................................................................................ATGAGAAGGGTAAATTTGATGAGTTGATTGAAGAGAAGGGAGTAAAAATACTTATTGATCCTAAGGCATTGATGCACGTGATTGGTACCAAGATGGATTTTGTAGATGATAAATTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTGAGTTCATTTTTATTAATCCCAACTCGAAAGGGCAATGCGGTTGTGGTGAGTCTTTCATGACAACAGCCAGTAAAGGTGCTGAAAAGTGAGATGATTTTAATGAGACATGATGTTTATAATGTACTCATTAGGTAGGCGAACAATGAAATAAAGATTTATTCCCAGAATTAAAATGTTATATCTTATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E688790" ref_strand="+" ref_description="SGN-E688790 [t3_tus_54_N10]">
      <seq>gaaatttcaggtaattatatttacagcccccatctttcaaaagaggaataacaggatccatttgcgttagtgaagaacctccaaaacggatcgatggtgtctccggtgctagcaaaggcggcggagagaatcggaaattcagtccggcggcaagcaataactattacagacgccgccgctgctcgaattagcaatctccttcagcaacggcagcgtccttttcttaagctcggcgttaaagctcgtggatgcaacggcttatcctacacgctcaattacgccgatgagaagggtaaatttgatgagttgattgaagagaagggagtaaaaatacttattgatcctaaggcattgatgcacgtgattggtaccaagatggattttgtagatgataaattgaggtctgagttcatttttattaatcccaactcgaaagggcaatgcggttgtggtgagtctttcatgacaacagccagtaaaggtgctgaanagtgagatgattttaatgagacatgatgtttataatgtactcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="-" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="34014" stop="21970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33714" g_stop="33432" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33431" i_stop="23237" i_length="10195">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23236" g_stop="23119" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="401" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23118" i_stop="22404" i_length="715">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22403" g_stop="22270" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="535" r_length="134" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="-" ref_id="SGN-E688790" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33714" e_stop="33432"/>
          <exon e_start="23236" e_stop="23119"/>
          <exon e_start="22403" e_stop="22270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTTCAGGTAATTATATTTACAGCCCCCATCTTTCAAAAGAGGAATAACAGGATCCATTTGCGTTAGTGAAGAACCTCCAAAACGGATCGATGGTGTCTCCGGTGCTAGCAAAGGCGGCGGAGAGAATCGGAAATTCAGTCCGGCGGCAAGCAATAACTATTACAGACGCCGCCGCTGCTCGAATTAGCAATCTCCTTCAGCAACGGCAGCGTCCTTTTCTTAAGCTCGGCGTTAAAGCTCGTGGATGCAACGGCTTATCCTACACGCTCAATTACGCCGGTAAATATCATATTCTGTAATACTATTAACTCATTTTTCATATTTGTATAGATTAATTTTCCTATTCAATAGAACTAATCGAATTCGATCAATTCTGTAGTCACAGTTTTTCTTTTATGATATTAGTATGATGGAAATATGTACCTTAGAAAGTTAGGTCAAAGTCCATACAATTTGATTCTTGAGAAGCGAAACACGACAAGTTAACTTCCGTATTGCACTTCTTTTTGGGCCAAAATTTGTTAGATATGTTGGACCTTTGGTGTAGGTTACCCGAGGCGAATTGAGCATTTTTTTTCGTTGATAAGGTAATTTGTATATAAAGTCAGCATCAAATTGATTGCTTGTTATATTTAAAAGTTACAATCCAGCGTAGTTTCTATATCCATCATATACAGCAGCATTGAGCTTAAGAAATCGAGGTGAATCCAGCATTTAGAGTCAATAGGCTTAGAATACATAACTGCTGGCAAATGTATTACCTGGTTTGATTCGGAAGCAGTGGATTAAGCAAATATATGTTCAACTTATGTGGTAGTCTTTTGGAACCAAATTGTCAAATTTGGTTGATGTTGTCCTACTGCTAGGCGGATATACCATCAAAGCGTGTCAAAAGACTAGCAATGCTCCCTCATCCCAATTTAAGTGTCTTACTTTTCTTTTTGGTATGTCTCGAAAAGAGTGCCTTTTTTTCTTCTTCTATATTTAGTAAGTTATTCCAATTTTAGCATTCTACACGGCAAGCTTAAGATCATAAGATTTAAGAAACTACACACTTCTTTAGTTTAAAACCACAAGATTCAAAAGTCTCCCTTTATTTCCTAGACTTCGTGACTAGTCAAACTAAAGACTCTTAAGTTGGGACGGAGGGAGTCATACATTTGGCCCTTTATTAAATAATGTGGTGTTTGGGTACTTGCTACCTCCCACTAACACATGTTAACTTGATCTTGCCTACTTAATTGACTTATAGGCCACACATTTGAATGCTGTAATTTGTTCATTTATTTATAATCAAAAGAAAAATGATGTAATCTCTGCAGTCAAAGGCGAATCCAGTATTTGAAGACGACGGGTACACCACCAAAGACTAATGCACGTTAGTTAAAGTATGTCACCCAATACTGATTAACTTTATTAAACATAAAAAGCTAAGGTACTAATGTATAAATATGAATTAAATGAGTCTTCTACATAAAGTTTGCTTTGGAGAGTAAAGGTTTTGAATAGTAATTTGCGCCATCAAGTTGCAGTTTAAAACTAGTCATCCCCCTTCTTTTATTCAATACTTTTTAACTTCTCAGATAAAAACAAATAAAGAAACAAAATAAACTATAAATGGGATTTGAACCCAGTCCCTCACCTAGGAGAGCCATTTAAACCACTGCACCCAATCAACTTTAGTATTTTAAGATGCCTAATATAATATATTTCATATCTCAAGGTGTGTATATATATATATATAATTTTTCCCAAAGTTCACGGGATGGTGAAGTAACAAAAAGTAGTGTTTAGACTAGACTAAATATGATTAAGGATGTAACTCTGGCAGACAGTTTCACATGACTATATAACACCTTTCAGCTTCAGAAGAAACTTGTGTAACATTGCTCATCAATCTATTGCAACTCCCGCTTCAAAGACGTCACGCATGGCATCAAAAAGCCTTGGCTTAATGCCTTCGTAACGGAATGGGTATCCCTTTGGATGCTCCTGAAAAAAAAATTGGCACATAAAATTGGTGAGTTGAAGTGGACTGAAACACTGAAAAGTCTTTCTATCCTTATTGTTAAACAAGGAAAATTGTTAATAGCAGATGTGAAGTTAGTTTCCCTTGAGTTTTGAAAAAATTGTTTGTGATCAGTAGTTCCTTTACGGTAATTTCTAAGTACGATATATACTCCTTGAGAAGCATTTCATTGTTGATGAATGTTGACGTTGATATGTTTATCTTAGTTAGGTTGATCCTGCCAAGTGCCAACAGTGTACTTGGGTATGCCTTTAGGAGCTAAATCAAAGTCTAAGGAAATCTGAAATAATGTGGTTGAAAAATGTGAGAAGAAGCTGGCAAGGTGGAAAAGACAGTACTTATCACTAGGGGGTACACAATCATTAGTAGGCTAGACAGAATCAGGAAGAAGTTTGTGGCAAGGAGATAAGGATAGGATACGCTACCACTTGGTCACATGAGGATTTTTGATAATTGACAAGAAGTTTGGGGATAAAGAATTTGAATACTCAAAGTGAAGCACTCAGAAGGAAATGGCTATGGAAGTATTCCAATGACAAAGATACACTGTAGGGGAGAGTCATAGAAGCTAAGTATGAGGAGGAAGACAAATGAACGGTGAAGGAAATTTTAATTCCTTATGGAGTATGGAGATCCATCGGAGATCTCTTGAATGAGCTGAAGTGCTTCTTCAAGATCAAGGTGAACCATGGGGCCAAAACTAGGTTCTGGACAGATGAATGGCACGGAGAAGGCAACTTAGAAAGGCTTTTACCAGATATCTACTCATTTGTACTATACCAACAGGCAACAGAGTGCCATAGTGGAATTATGAACAATTGAGGGATGGAAATTCAATTTTAGAAGGCAATTCAATGATTGAGAAATACTAAGAATGTCAGATTTTATCAGTTGAGCCATTCAGTGGATTGGTAGCAGATGAAGATGAACTATGGTGGAAGGGAAATGAGAAAGGCACATACAAAGTGAGCAAAGCGTATAGGAAAATGAACCACAAGCAGCAGCCGAACAGTTGGCCATGGAAGAACATTTGGAAAACCAAAATACCATATAAAGTGAGCATGCTTTGTGTGGCTCTAGCAAAGGAGGCATTGCTTACCCAAGAGAACCCAATGAAAAAAGGGATAATTTTAAGCCCCAGGTGCTTCTTGTGCGGGGAGCAGGCAGAGACTATAAATCATCTATTTCTATATTGTACAATTACAAGACAACTATGGAGAATGTTTTTGAACCTTAGAGGAATAGGCCGAATAGCACGGAGCATGCCTGGGAAAATTACAGAGGCCATAACAAGCTAGGAAAAAGCTGGGTTTTTGGCCAATAATAGAGGCAGGTGGAGGATAGTCCCACCAAGCATTTGGTGGACAATATGGAAGGAGAGGAATTCTAGGTGTTTTGAGAGCATAGAGAACAATATGCAACATATTAAGTTCAATTGCATCTTGCTATTGTGTTTTTGGTGTAATCAGTTGCTTTTAAATGATCACTGTCTATTATTGATGTTGTAGACACATTATAGACATAGGATCATAGATGTAGGTAGTATTTTGTAAATATGGAGTTACTACAACTCTTCTAAGATTCAGATTCTAACATATATAGACAAAGTTACCAGTTTAAAAAAAAAAGAAAAAATAATGAAGCAGAAAGCACACTTACCAAGGAATATGATATCCACACCCCTGGACGGGCATACGTCATTGAGTTAGTCCTTCTATCCCATTGGACTCCTCGTCTGGCCAACAAAGTTGAAAATAACCAGTATTTTCTCATGAAAATTCTTAGTTTTGCCTTCAGATGATCAACTGAAAGGTGTGGATTCATCCCCTGCATCTGGTTAGTTACGATGCTCCAGCTTTCCTCTTGGAATGTACTTCCAAATTCATAATCTTTGCTGATCACCTTGGCCAACAGTTTGAGAAATTCATACTGTTGTTCTTCTGTCATAACTACATGACCGTTTGGGCCTGGTAGGTCCATCTGCAGTAAAGTAAGGGAAAGTGTACTCATTATGTAGCATTTTCACATCATTATAAAAATAATAGATTGAAACTTTTGTGTGCGTCTCTGTCTGGTTATTTGATAATATGGTTAATCTTTCTAAAATAAATGCTAAGAAGCATCTTGATGCTAACAATTCAATTAGAAAATTTTGAGCATCTTGATCTGCTTAACTATTATTGGCAGAGCAGAGTTAGGCTACTAATATGCTCCTTCCTACAGCTTTGTTTTTTTTGAGCTTAAATGCATTTGAATTTCGAGGCATAAGCTTCATTCGGTATACTAGTGTTGGCCTGTTGGGTATCAACTAATGAGCTACATGATGAAGAAACAGAAAAAAGAGAGATGTTTTAGTTTTGAGTATTTCAGTCATAAACATCGCCAAAGAGCTGGCCGTATACAAGGGGTATACCCAAAAATAAAGAATCTACAATACGTGATTCTTTACAAAATTCACCCATTCTTTTATACACCATGGAGCTTTATGGGTTCACCAAAAGAAAATAAGTGAACGGAGGCTACTCCTCAACTCTTAAAACTCTATACTACCTCTTCAAAAGCTCTTTTATTTCTCCCCCTCCAAACAACCCACACAAGAGGAACCATATTCCATGTCCTACAACTTCTCCAACTAAACATCAATTCTTTCATAGTTTTTGGCATTGCCCAAGAAGATTTCAAACCATCGTAATATGTCCCACCATGACCTCATGGTAAAAAAGCACGGTAGGAGAAGATGATCCACTTCTTCAAGCCCTCCTTGTACATGTAATACCGATTGACACACACAACCTTCCGTTTTCTAAGATTTCCCGCTGTCAATATCACCCTCTAGCTGCCAGCAAAGAGAAGAATCACACCTTCCTTGGCACATACGATACCCATATTGCATCACATGGAAACACGTCCTCCATAATCAGATGTTTCTCATAGAAACATTTAAGAGAGAAAACTCCATTATTACCCAAACTCCACCATAGAGCATTCAGGGTTATCCACCGGAGTGACTTGCCTATGTAGAGGGGCCGGAAATCTTGGGAACTAAGTCACCTCTCAATCGTCGAAATTCCTTCCAAATCTTAGATCCCAAAAATTATCTCCACCATAGGCCCACCTAATTTCTTGGACCTTCAATTCTCCTTGACATGACATTCTAAACAAATTCTGAAGATTATCTTTCAGTGAGTTATCTCTACCCAACCTACGTCCCGGGAAATTCTCTCCTTCCATTCCAACCTTGAATGAGATACTTTTGCTAAAATCATCCCATCCCTTCATTATGTTCCTCCACAAACCGCACCCAAAAGGCATAATGACATCTCTAGTTCTCCTAAATCTGCTTCCCACTAGACAAATAGGTCTGTAGTCCTCCATGCACCATGCTCCTCCCTCTTAGGGGTAATGACAACTAATGAAGCATTCAAACTCTTTTCAAATACACCACTTCCCTGGAAGTCAACAACTGTATCTATTAAATCAGATCTAACCATTTTCCTGCAGTGCTCAAAAAAATCCGTAGAGGCATCAGGTGCCAGAGCTTTGTTACTAGCACAACCCTCTACCGCCCTCTTCAACTCTTCCTCCTGAATTTCCCTCTCTAGCCATTCACTCTCCTCCCTGCCAATATGACGAACCCTAAACCCCCCAATTTAGGCCCCCAATCTGCTACCTCTAACAAACGCTTGTAAAAATCTACAATTGCCTTTTCTACTTCCTCCTTTTCCACATGCATCACCCATTTACCTTTTCCGACTATATAAAAGTCCTTCTCCTATTAGCAGTTACTACCCTATGGAAATGTTTTTTGTTGGAGTCCCCCTCTACAACCATTATGACCCTCAAGTTCTGTGTCAAACCAATCTCTTGGGCCAAAGCCAACTCATCTAGCTCCCTTTTCAACCCCTCTAAAATTGTTCTTTCCTCAATTATTACAAGACTAATGACTTAATTCATGTGTAACTTCGTTCAAGGCTTCAAGCTTCAAATTTGCGATGATCATCAAATGGAGAATATTGCCATCTGGTTTTTTGTTTTAGAGGAGGATAAAAAAGTTGGCAAATGGGCTATTCTAGTGGTATGATGTAAGCAACTTTGAAGAACTTGAATGATATTTTATCAGGTAACACCTCTGCCAATTCCTTCTCAACGAAAAAGCACTAAAGCAATTAAAAACAAACGCTGAAGAAATGGAAACAAAAGGAATTTAGAAATGGGAATCTGTGCAACATTTCTAAAGTAAATTTTACTTCATCGTGGAGTACACTGAAACTATTCTTCGAATTTCATAGAAGCGAAACACTTAAACATGGAGGATTTAGAGATGGAAATTTGTCTATTACTATAGCTTAAGATTTACATGGCTTGCGTAGCCCTTTTGTTTGTAAAAGGGTTTGATCTAAAAATTGAAAGGCAAAAATTAGGGTTTTTGGTGTTTTTGCAAACCTGGCTCCTCTTCTCCTCTTCCAATCACGACTCTCTAGCCTTTGAGAGGACGATACCTTCACTGCTACTCAGACCTCTGCATCGCGACTTGGGACTCTCTCAGGTACATTCATCTCTTTTTTTTCCTTCTTCTTCTCTTCTTCTCTGTACTTTTTTTTCAAGCAGTGGCCTTGGGAAATGTTCTTTTTTAATTTATTAGCTATGGCAGGCCCTTGTCGCCTTTCACTGTCCACCCCTCCCTCCAAAAAAAAAGAAAAATAGAAAAAAAAGCAGAGCATGGAGTTAAATTTTAAAAATTATAGGAGGAAAAAATGGAACAACGACATCATAAAAGAAAAGTAAGTGCAAAGAATATGAGTATCACATACAATTTTTTACGAGTTTCACATTGATTAATGGTTGGATAATGTTGAAGCATTTAGTTATTGCTCATTTGAAGAGAGGTTAGAATGCTGCCCTCCTTGGATAACTCTGGCACTTAAGGAAGTAAATTATATTGGATAATGTCGTATCTTAAACAAATTTTATCACAGAAAGCAAATCAAATAACTCGAAGCAAAAGATCCTGCTACGCTGGAATTCATCTTGGTCAACCCGTAAAGGGTTTACACAAAACTGGGGGACATGTAAAAGTATATGCAGCAACAGTAAAGAAACGATTTGCTGGGATTGGATTCCTCCAAATAGAAATAGAAAGACGCTGCAATATTAAAACCCTATGACACACATACTAAATAAGTGTAAGATAGATTGAGCTAGAAATTTAATCAAGATCATGTATTCAGTTTTTAAGGAATAAAGAAGGAGATCATTATTTCTAAAACATGTCGAGATGCACGAGATATCAATCATTAAGAACTAAAGTTACATTTGGAGAAATAAGGTAATAAAGTGAATTACAAAATGGGAGATATCCTATTTCTCGTCTAACAAACATCGTGAAATCATCAAACTGATAATCAGGGGAAACAAATCATCCTTAGCAAAAGTACATCAATATTAATTACATTCTAAAAACCCTAGTTTCATATGGATTGTGATAATGTTGATAAGAGAAAACTCAGATCATGCTCACCTTGTTCAGTCGAGAGGTCCTTTCTAGTTGTTTGATAGATGAACTGGAGTGTAGTTGTAGCTTGAAAACTCATTGGTGCAATGTTTTCATTTGAAGTCACCAACCTCGTTTTTATCACCTCACAACCATTATATTCTGTGAGTTTGGTTACATCTTAAAGTAGCATAATAATAAATGCACAATGAGATGACAAAATCCATGAAAGATTACTCTACGAGTAGAGGTGGATCCAAGATTTAAAGTTTATGGTTCTCATTGATCTTAAATTTTTTAAAAAAACTTTATTTTAAGTGCCTATGGGGAATCGAACCCTCATTGAGGCGGAAAATAAAGATTAAGTTCCATTTTTGCCCCTAGACCATGAGCTTACTTTGTTACTAGAAACAAATAGTTTTTATATATTTAATGGATTTCTCATAATAAAAATAGTGTCTATACAAAAGTTATCGGGTTCGAAAACCGTACCCGATACCCTAGCAAGAACAATAGTGATATAATTGAACAATAAATAATATTACAATTGATACTAATAGTGATATTGATAAGTAAAAGAATGATCAAATAAGGTGCTCTAAGCTCTAACCATGCTCTTCCACAGAAAAAGAGAGAAATCACTGTACTATTTACTTAACCATCTACCCTGATTCTCGACCTTTATATTTTTTTTAATCTAGGGTCATGTCCTCGGTGTGAAGAAAATGTGTTGTGTTATTTCTTATCACTGTCCTAACTGTCGAGGCACTTAGTTTTAGTGACGAGATAACTCTAGAGTCCGTAAATTGAATATAGAGTTGAAAACTTTCAAATTTAGTTCGACTTAAACAAAGTATATAGAGAGCAAGTACAGTGATTAGACATGACACAACACATCTTTATCTCCCCGAGGACATGACCCTAGATAAAAAAAATATAAAGGTTGAGAATCAGGGTAGAGGACTAAGTAATAGTCGAGTGATTTCTCTCTTTTTCTGTGGAAGAGCATGGTTCTAGCTTAGAGCACCTTATTTGATCCTTCTTTTACTTATCAATATCACTATCAGTATCAATTGTAATATTATTTACTGTTCAATTATATCACTATTGTTCTTGATAGGGTATCGGGTACGGGTTCCCGAACCCGGTAACTTTTGTATAGACCCTATATTTATATAGAGAAATCCATTAAATATATAAAAACTATTTGTTTAAGGTAACAAAGTAAGCTCATGGTCTAGAGGCAGAAATGGAACTTACTTAATCTTTATTTCCCGCCTCAGTGAGGGTTCGATTCCCCTTGGGCACTTACAATAATTTTTTTTTTTTTTTTAAATTTAAGAACGATGTGAACCATAAACTTTAAATCTTGCATCCACTTCTACCCGTAGAGTAATCTTTCTTGAATTTTTCATCTCATCGCACATTTATTATTATGCTACTTTAAGATGTAACTGATCTCACTATATATAATGGTTGTGAGATGATAAAACTGAGGTTGGTGACTTTAAATGAACACATTGCACCAAGGAGTTTACGATCGGCAACCGCACTCTTGTAAAGGATGATTTGTTTTCTTTTTTAATCATCATCTTGTTTCCCCCGATTAATGTCCATTTGATGATTTCACAATTTTTGTTAGACGAGAAACATGATATCTCCCATTTTATAATTCACCTTTTACCTTATTTCTTCAAATTTAATTTTAGTTCTTAATGATTGATATGTCGTACATCTCGACATGTTTTAGAAATAAAGATGTGCTTTAACTATTGAATACATGATTAAATTTGTTGCTCAATCTATCTTACACTCATTTGGTATGTGCGCCATTTGGTTTTAATATTCTGCAGTCTTTCTATTTCAATTTGGAGGAATCCAATCCCAGCAAATTGTTTCTCTATGTTTGGTGCATATACTTAAACATGTCCTGCAGTTTTGAGTTTTTCCCCTTTACAAGTTGACCAAGGATAAATTCCGTAGCAAGATCTTTTGCTTCGAGTTATCTGATTTGCTTTTTGTGATATAGTTTGTTTAAGATACCACACTATCCAATGTAATTTAGTTCCTTAAGTGCCAGAGCTATTCAAGAAGGGCAACAATCTAAGCATCTCTTCAAATGAGCAATAGCTAAATGCTATGTTCAATGCAGGTTGGGTGCCCCGGTCATTCAAGTGGTGTTCTGTACAGTCAACAAGGCAGTACTATGTTTGTCTTGTTGCTCATTGACAAATTTAATATGGGTGTCAATTCTTTCAGTTTGTGGTCCTTTCAAGTGGACAAATCTTAAAAAAACAATATAATTGGCAAAGTGACATATTTATTATTATTATTTTTGAATTAGGAATATAGAATTAGAAAATTATAATTTTTTTGTTAAACTTGAATCGGAATCTTAACTGGGTGTTTCACTTAAGAATGGTGTTAACATCCTATGCATTTAGGATTGTCTTTTTGTGTTTACAGTTAACCATTGCATTTATATTTGTCATCTTTTAATCCATTTGCACCACCCTTCACTAACATTCACACTTCAAATATAAAACAAAACACATTCACACTTCAAATATATGCAAAAACAGAACACATTCACACTTAAAATTGCTTATTGCCATGGACAATCTTAGCAGTTTTATACTCTTTTTGCGTTTGACATTGACAATATTATTGCAAATCGTCAGTTACTTAGTTCACTTGTCGCAAGACTCGAACTTCGGACTTTAAGTTGCAAGTTCATCAACTTTTTCCGATTGAACCAAGCCTGAGGGACAATTTTTATTTTTATTTTTGATGAACTTTCTCCTTTGAATCTATTCAATATCATTATGCTCACAAAATAATCCATCAGCAGGACTAATTGTCTATGGCTAATGATGTTATACATCATCAAACTGATTATGCTATGGATTTCTGTTGTGGTTTTATTTCTAATCACAACCCTTTGAACATTGTAGATGAGAAGGGTAAATTTGATGAGTTGATTGAAGAGAAGGGAGTAAAAATACTTATTGATCCTAAGGCATTGATGCACGTGATTGGTACCAAGATGGATTTTGTAGATGATAAATTGAGGTAAGGGATTTACTTGTCCGTTTCTATATTGTTGGTATTAAGCCTTTTAATTTTGTGTACAAGTGGATCATTTTGCTTTTGGATGAAAAGGACTGGAGACACCTAGTTTAAGTAATCTTACATATTTTGAACCCTAATGCCATGTAACATACTCCTTTAGCTGTTCTGATGTCATTGAAAGTCTGATTATTGTTTGTTTATGTGCAAATTATTCTGGGAGTTTTTCCATTATAAGGTTAGTTTTGAGAAATATGAAGTTATCGACTCCAGAAAATCTTAGTATCAAGACTTACTGTTGGATGAGGGAGACAAAAGTCTTGCATCTTCTTGTTTATCTTCTCGTTTATTGGATTGTCAGTTCATGTTAGTTTTTTGGTAAGCATACTATCTATATGTGTTTCTTTGAGCCGAGAGTCTTTCGGAAACAACCTTTCTACCTAACAAAGTAGAAATAAGGTCTGCATACACTCTACCCTCCCCAGACCCCACTTGTGTGACTATACTGGGTATGTTGTTGTTGTTGTTGTACTATCTATCTGTGTTAGTTTCTGCCGATGTCCCTTTCTGGGGGCAGGGGGGTCCAGAAGAGAAACAAAATAATGCTGGGCTCTGAGACAAATTCTTTAAAGATGTTTCGACTTGTCCAAACCTGTCCCTGTTTCATATGGTGTCCTCCGCAAGCAACTCTTGACGCGTTCTTACATTTTATGTGCAGGTCTGAGTTCATTTTTATTAATCCCAACTCGAAAGGGCAATGCGGTTGTGGTGAGTCTTTCATGACAACAGCCAGTAAAGGTGCTGAAAAGTGAGATGATTTTAATGAGACATGATGTTTATAATGTACTCATT</genome_strand>
        <mrna_strand>GAAATTTCAGGTAATTATATTTACAGCCCCCATCTTTCAAAAGAGGAATAACAGGATCCATTTGCGTTAGTGAAGAACCTCCAAAACGGATCGATGGTGTCTCCGGTGCTAGCAAAGGCGGCGGAGAGAATCGGAAATTCAGTCCGGCGGCAAGCAATAACTATTACAGACGCCGCCGCTGCTCGAATTAGCAATCTCCTTCAGCAACGGCAGCGTCCTTTTCTTAAGCTCGGCGTTAAAGCTCGTGGATGCAACGGCTTATCCTACACGCTCAATTACGCCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGAAGGGTAAATTTGATGAGTTGATTGAAGAGAAGGGAGTAAAAATACTTATTGATCCTAAGGCATTGATGCACGTGATTGGTACCAAGATGGATTTTGTAGATGATAAATTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGAGTTCATTTTTATTAATCCCAACTCGAAAGGGCAATGCGGTTGTGGTGAGTCTTTCATGACAACAGCCAGTAAAGGTGCTGAANAGTGAGATGATTTTAATGAGACATGATGTTTATAATGTACTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E551016" ref_strand="+" ref_description="SGN-E551016 [TUS-54-N10]">
      <seq>gaaatttcaggtaattatatttacagcccccatctttcaaaagaggaataacaggatccatttgcgttagtgaagaacctccaaaacggatcgatggtgtctccggtgctagcaaaggcggcggagagaatcggaaattcagtccggcggcaagcaataactattacagacgccgccgctgctcgaattagcaatctccttcagcaacggcagcgtccttttcttaagctcggcgttaaagctcgtggatgcaacggcttatcctacacgctcaattacgccgatgagaagggtaaatttgatgagttgattgaagagaagggagtaaaaatacttattgatcctaaggcattgatgcacgtgattggtaccaagatggattttgtagatgataaattgaggtctgagttcatttttattaatcccaactcgaaagggcaatgcggttgtggtgagtctttcatgacaacagccagtaaaggtgctgaanagtgagatgattttaatgagacatgatgtttataatgtactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="-" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="34014" stop="21972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33714" g_stop="33432" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33431" i_stop="23237" i_length="10195">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23236" g_stop="23119" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="401" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23118" i_stop="22404" i_length="715">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22403" g_stop="22272" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="533" r_length="132" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="-" ref_id="SGN-E551016" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33714" e_stop="33432"/>
          <exon e_start="23236" e_stop="23119"/>
          <exon e_start="22403" e_stop="22272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTTCAGGTAATTATATTTACAGCCCCCATCTTTCAAAAGAGGAATAACAGGATCCATTTGCGTTAGTGAAGAACCTCCAAAACGGATCGATGGTGTCTCCGGTGCTAGCAAAGGCGGCGGAGAGAATCGGAAATTCAGTCCGGCGGCAAGCAATAACTATTACAGACGCCGCCGCTGCTCGAATTAGCAATCTCCTTCAGCAACGGCAGCGTCCTTTTCTTAAGCTCGGCGTTAAAGCTCGTGGATGCAACGGCTTATCCTACACGCTCAATTACGCCGGTAAATATCATATTCTGTAATACTATTAACTCATTTTTCATATTTGTATAGATTAATTTTCCTATTCAATAGAACTAATCGAATTCGATCAATTCTGTAGTCACAGTTTTTCTTTTATGATATTAGTATGATGGAAATATGTACCTTAGAAAGTTAGGTCAAAGTCCATACAATTTGATTCTTGAGAAGCGAAACACGACAAGTTAACTTCCGTATTGCACTTCTTTTTGGGCCAAAATTTGTTAGATATGTTGGACCTTTGGTGTAGGTTACCCGAGGCGAATTGAGCATTTTTTTTCGTTGATAAGGTAATTTGTATATAAAGTCAGCATCAAATTGATTGCTTGTTATATTTAAAAGTTACAATCCAGCGTAGTTTCTATATCCATCATATACAGCAGCATTGAGCTTAAGAAATCGAGGTGAATCCAGCATTTAGAGTCAATAGGCTTAGAATACATAACTGCTGGCAAATGTATTACCTGGTTTGATTCGGAAGCAGTGGATTAAGCAAATATATGTTCAACTTATGTGGTAGTCTTTTGGAACCAAATTGTCAAATTTGGTTGATGTTGTCCTACTGCTAGGCGGATATACCATCAAAGCGTGTCAAAAGACTAGCAATGCTCCCTCATCCCAATTTAAGTGTCTTACTTTTCTTTTTGGTATGTCTCGAAAAGAGTGCCTTTTTTTCTTCTTCTATATTTAGTAAGTTATTCCAATTTTAGCATTCTACACGGCAAGCTTAAGATCATAAGATTTAAGAAACTACACACTTCTTTAGTTTAAAACCACAAGATTCAAAAGTCTCCCTTTATTTCCTAGACTTCGTGACTAGTCAAACTAAAGACTCTTAAGTTGGGACGGAGGGAGTCATACATTTGGCCCTTTATTAAATAATGTGGTGTTTGGGTACTTGCTACCTCCCACTAACACATGTTAACTTGATCTTGCCTACTTAATTGACTTATAGGCCACACATTTGAATGCTGTAATTTGTTCATTTATTTATAATCAAAAGAAAAATGATGTAATCTCTGCAGTCAAAGGCGAATCCAGTATTTGAAGACGACGGGTACACCACCAAAGACTAATGCACGTTAGTTAAAGTATGTCACCCAATACTGATTAACTTTATTAAACATAAAAAGCTAAGGTACTAATGTATAAATATGAATTAAATGAGTCTTCTACATAAAGTTTGCTTTGGAGAGTAAAGGTTTTGAATAGTAATTTGCGCCATCAAGTTGCAGTTTAAAACTAGTCATCCCCCTTCTTTTATTCAATACTTTTTAACTTCTCAGATAAAAACAAATAAAGAAACAAAATAAACTATAAATGGGATTTGAACCCAGTCCCTCACCTAGGAGAGCCATTTAAACCACTGCACCCAATCAACTTTAGTATTTTAAGATGCCTAATATAATATATTTCATATCTCAAGGTGTGTATATATATATATATAATTTTTCCCAAAGTTCACGGGATGGTGAAGTAACAAAAAGTAGTGTTTAGACTAGACTAAATATGATTAAGGATGTAACTCTGGCAGACAGTTTCACATGACTATATAACACCTTTCAGCTTCAGAAGAAACTTGTGTAACATTGCTCATCAATCTATTGCAACTCCCGCTTCAAAGACGTCACGCATGGCATCAAAAAGCCTTGGCTTAATGCCTTCGTAACGGAATGGGTATCCCTTTGGATGCTCCTGAAAAAAAAATTGGCACATAAAATTGGTGAGTTGAAGTGGACTGAAACACTGAAAAGTCTTTCTATCCTTATTGTTAAACAAGGAAAATTGTTAATAGCAGATGTGAAGTTAGTTTCCCTTGAGTTTTGAAAAAATTGTTTGTGATCAGTAGTTCCTTTACGGTAATTTCTAAGTACGATATATACTCCTTGAGAAGCATTTCATTGTTGATGAATGTTGACGTTGATATGTTTATCTTAGTTAGGTTGATCCTGCCAAGTGCCAACAGTGTACTTGGGTATGCCTTTAGGAGCTAAATCAAAGTCTAAGGAAATCTGAAATAATGTGGTTGAAAAATGTGAGAAGAAGCTGGCAAGGTGGAAAAGACAGTACTTATCACTAGGGGGTACACAATCATTAGTAGGCTAGACAGAATCAGGAAGAAGTTTGTGGCAAGGAGATAAGGATAGGATACGCTACCACTTGGTCACATGAGGATTTTTGATAATTGACAAGAAGTTTGGGGATAAAGAATTTGAATACTCAAAGTGAAGCACTCAGAAGGAAATGGCTATGGAAGTATTCCAATGACAAAGATACACTGTAGGGGAGAGTCATAGAAGCTAAGTATGAGGAGGAAGACAAATGAACGGTGAAGGAAATTTTAATTCCTTATGGAGTATGGAGATCCATCGGAGATCTCTTGAATGAGCTGAAGTGCTTCTTCAAGATCAAGGTGAACCATGGGGCCAAAACTAGGTTCTGGACAGATGAATGGCACGGAGAAGGCAACTTAGAAAGGCTTTTACCAGATATCTACTCATTTGTACTATACCAACAGGCAACAGAGTGCCATAGTGGAATTATGAACAATTGAGGGATGGAAATTCAATTTTAGAAGGCAATTCAATGATTGAGAAATACTAAGAATGTCAGATTTTATCAGTTGAGCCATTCAGTGGATTGGTAGCAGATGAAGATGAACTATGGTGGAAGGGAAATGAGAAAGGCACATACAAAGTGAGCAAAGCGTATAGGAAAATGAACCACAAGCAGCAGCCGAACAGTTGGCCATGGAAGAACATTTGGAAAACCAAAATACCATATAAAGTGAGCATGCTTTGTGTGGCTCTAGCAAAGGAGGCATTGCTTACCCAAGAGAACCCAATGAAAAAAGGGATAATTTTAAGCCCCAGGTGCTTCTTGTGCGGGGAGCAGGCAGAGACTATAAATCATCTATTTCTATATTGTACAATTACAAGACAACTATGGAGAATGTTTTTGAACCTTAGAGGAATAGGCCGAATAGCACGGAGCATGCCTGGGAAAATTACAGAGGCCATAACAAGCTAGGAAAAAGCTGGGTTTTTGGCCAATAATAGAGGCAGGTGGAGGATAGTCCCACCAAGCATTTGGTGGACAATATGGAAGGAGAGGAATTCTAGGTGTTTTGAGAGCATAGAGAACAATATGCAACATATTAAGTTCAATTGCATCTTGCTATTGTGTTTTTGGTGTAATCAGTTGCTTTTAAATGATCACTGTCTATTATTGATGTTGTAGACACATTATAGACATAGGATCATAGATGTAGGTAGTATTTTGTAAATATGGAGTTACTACAACTCTTCTAAGATTCAGATTCTAACATATATAGACAAAGTTACCAGTTTAAAAAAAAAAGAAAAAATAATGAAGCAGAAAGCACACTTACCAAGGAATATGATATCCACACCCCTGGACGGGCATACGTCATTGAGTTAGTCCTTCTATCCCATTGGACTCCTCGTCTGGCCAACAAAGTTGAAAATAACCAGTATTTTCTCATGAAAATTCTTAGTTTTGCCTTCAGATGATCAACTGAAAGGTGTGGATTCATCCCCTGCATCTGGTTAGTTACGATGCTCCAGCTTTCCTCTTGGAATGTACTTCCAAATTCATAATCTTTGCTGATCACCTTGGCCAACAGTTTGAGAAATTCATACTGTTGTTCTTCTGTCATAACTACATGACCGTTTGGGCCTGGTAGGTCCATCTGCAGTAAAGTAAGGGAAAGTGTACTCATTATGTAGCATTTTCACATCATTATAAAAATAATAGATTGAAACTTTTGTGTGCGTCTCTGTCTGGTTATTTGATAATATGGTTAATCTTTCTAAAATAAATGCTAAGAAGCATCTTGATGCTAACAATTCAATTAGAAAATTTTGAGCATCTTGATCTGCTTAACTATTATTGGCAGAGCAGAGTTAGGCTACTAATATGCTCCTTCCTACAGCTTTGTTTTTTTTGAGCTTAAATGCATTTGAATTTCGAGGCATAAGCTTCATTCGGTATACTAGTGTTGGCCTGTTGGGTATCAACTAATGAGCTACATGATGAAGAAACAGAAAAAAGAGAGATGTTTTAGTTTTGAGTATTTCAGTCATAAACATCGCCAAAGAGCTGGCCGTATACAAGGGGTATACCCAAAAATAAAGAATCTACAATACGTGATTCTTTACAAAATTCACCCATTCTTTTATACACCATGGAGCTTTATGGGTTCACCAAAAGAAAATAAGTGAACGGAGGCTACTCCTCAACTCTTAAAACTCTATACTACCTCTTCAAAAGCTCTTTTATTTCTCCCCCTCCAAACAACCCACACAAGAGGAACCATATTCCATGTCCTACAACTTCTCCAACTAAACATCAATTCTTTCATAGTTTTTGGCATTGCCCAAGAAGATTTCAAACCATCGTAATATGTCCCACCATGACCTCATGGTAAAAAAGCACGGTAGGAGAAGATGATCCACTTCTTCAAGCCCTCCTTGTACATGTAATACCGATTGACACACACAACCTTCCGTTTTCTAAGATTTCCCGCTGTCAATATCACCCTCTAGCTGCCAGCAAAGAGAAGAATCACACCTTCCTTGGCACATACGATACCCATATTGCATCACATGGAAACACGTCCTCCATAATCAGATGTTTCTCATAGAAACATTTAAGAGAGAAAACTCCATTATTACCCAAACTCCACCATAGAGCATTCAGGGTTATCCACCGGAGTGACTTGCCTATGTAGAGGGGCCGGAAATCTTGGGAACTAAGTCACCTCTCAATCGTCGAAATTCCTTCCAAATCTTAGATCCCAAAAATTATCTCCACCATAGGCCCACCTAATTTCTTGGACCTTCAATTCTCCTTGACATGACATTCTAAACAAATTCTGAAGATTATCTTTCAGTGAGTTATCTCTACCCAACCTACGTCCCGGGAAATTCTCTCCTTCCATTCCAACCTTGAATGAGATACTTTTGCTAAAATCATCCCATCCCTTCATTATGTTCCTCCACAAACCGCACCCAAAAGGCATAATGACATCTCTAGTTCTCCTAAATCTGCTTCCCACTAGACAAATAGGTCTGTAGTCCTCCATGCACCATGCTCCTCCCTCTTAGGGGTAATGACAACTAATGAAGCATTCAAACTCTTTTCAAATACACCACTTCCCTGGAAGTCAACAACTGTATCTATTAAATCAGATCTAACCATTTTCCTGCAGTGCTCAAAAAAATCCGTAGAGGCATCAGGTGCCAGAGCTTTGTTACTAGCACAACCCTCTACCGCCCTCTTCAACTCTTCCTCCTGAATTTCCCTCTCTAGCCATTCACTCTCCTCCCTGCCAATATGACGAACCCTAAACCCCCCAATTTAGGCCCCCAATCTGCTACCTCTAACAAACGCTTGTAAAAATCTACAATTGCCTTTTCTACTTCCTCCTTTTCCACATGCATCACCCATTTACCTTTTCCGACTATATAAAAGTCCTTCTCCTATTAGCAGTTACTACCCTATGGAAATGTTTTTTGTTGGAGTCCCCCTCTACAACCATTATGACCCTCAAGTTCTGTGTCAAACCAATCTCTTGGGCCAAAGCCAACTCATCTAGCTCCCTTTTCAACCCCTCTAAAATTGTTCTTTCCTCAATTATTACAAGACTAATGACTTAATTCATGTGTAACTTCGTTCAAGGCTTCAAGCTTCAAATTTGCGATGATCATCAAATGGAGAATATTGCCATCTGGTTTTTTGTTTTAGAGGAGGATAAAAAAGTTGGCAAATGGGCTATTCTAGTGGTATGATGTAAGCAACTTTGAAGAACTTGAATGATATTTTATCAGGTAACACCTCTGCCAATTCCTTCTCAACGAAAAAGCACTAAAGCAATTAAAAACAAACGCTGAAGAAATGGAAACAAAAGGAATTTAGAAATGGGAATCTGTGCAACATTTCTAAAGTAAATTTTACTTCATCGTGGAGTACACTGAAACTATTCTTCGAATTTCATAGAAGCGAAACACTTAAACATGGAGGATTTAGAGATGGAAATTTGTCTATTACTATAGCTTAAGATTTACATGGCTTGCGTAGCCCTTTTGTTTGTAAAAGGGTTTGATCTAAAAATTGAAAGGCAAAAATTAGGGTTTTTGGTGTTTTTGCAAACCTGGCTCCTCTTCTCCTCTTCCAATCACGACTCTCTAGCCTTTGAGAGGACGATACCTTCACTGCTACTCAGACCTCTGCATCGCGACTTGGGACTCTCTCAGGTACATTCATCTCTTTTTTTTCCTTCTTCTTCTCTTCTTCTCTGTACTTTTTTTTCAAGCAGTGGCCTTGGGAAATGTTCTTTTTTAATTTATTAGCTATGGCAGGCCCTTGTCGCCTTTCACTGTCCACCCCTCCCTCCAAAAAAAAAGAAAAATAGAAAAAAAAGCAGAGCATGGAGTTAAATTTTAAAAATTATAGGAGGAAAAAATGGAACAACGACATCATAAAAGAAAAGTAAGTGCAAAGAATATGAGTATCACATACAATTTTTTACGAGTTTCACATTGATTAATGGTTGGATAATGTTGAAGCATTTAGTTATTGCTCATTTGAAGAGAGGTTAGAATGCTGCCCTCCTTGGATAACTCTGGCACTTAAGGAAGTAAATTATATTGGATAATGTCGTATCTTAAACAAATTTTATCACAGAAAGCAAATCAAATAACTCGAAGCAAAAGATCCTGCTACGCTGGAATTCATCTTGGTCAACCCGTAAAGGGTTTACACAAAACTGGGGGACATGTAAAAGTATATGCAGCAACAGTAAAGAAACGATTTGCTGGGATTGGATTCCTCCAAATAGAAATAGAAAGACGCTGCAATATTAAAACCCTATGACACACATACTAAATAAGTGTAAGATAGATTGAGCTAGAAATTTAATCAAGATCATGTATTCAGTTTTTAAGGAATAAAGAAGGAGATCATTATTTCTAAAACATGTCGAGATGCACGAGATATCAATCATTAAGAACTAAAGTTACATTTGGAGAAATAAGGTAATAAAGTGAATTACAAAATGGGAGATATCCTATTTCTCGTCTAACAAACATCGTGAAATCATCAAACTGATAATCAGGGGAAACAAATCATCCTTAGCAAAAGTACATCAATATTAATTACATTCTAAAAACCCTAGTTTCATATGGATTGTGATAATGTTGATAAGAGAAAACTCAGATCATGCTCACCTTGTTCAGTCGAGAGGTCCTTTCTAGTTGTTTGATAGATGAACTGGAGTGTAGTTGTAGCTTGAAAACTCATTGGTGCAATGTTTTCATTTGAAGTCACCAACCTCGTTTTTATCACCTCACAACCATTATATTCTGTGAGTTTGGTTACATCTTAAAGTAGCATAATAATAAATGCACAATGAGATGACAAAATCCATGAAAGATTACTCTACGAGTAGAGGTGGATCCAAGATTTAAAGTTTATGGTTCTCATTGATCTTAAATTTTTTAAAAAAACTTTATTTTAAGTGCCTATGGGGAATCGAACCCTCATTGAGGCGGAAAATAAAGATTAAGTTCCATTTTTGCCCCTAGACCATGAGCTTACTTTGTTACTAGAAACAAATAGTTTTTATATATTTAATGGATTTCTCATAATAAAAATAGTGTCTATACAAAAGTTATCGGGTTCGAAAACCGTACCCGATACCCTAGCAAGAACAATAGTGATATAATTGAACAATAAATAATATTACAATTGATACTAATAGTGATATTGATAAGTAAAAGAATGATCAAATAAGGTGCTCTAAGCTCTAACCATGCTCTTCCACAGAAAAAGAGAGAAATCACTGTACTATTTACTTAACCATCTACCCTGATTCTCGACCTTTATATTTTTTTTAATCTAGGGTCATGTCCTCGGTGTGAAGAAAATGTGTTGTGTTATTTCTTATCACTGTCCTAACTGTCGAGGCACTTAGTTTTAGTGACGAGATAACTCTAGAGTCCGTAAATTGAATATAGAGTTGAAAACTTTCAAATTTAGTTCGACTTAAACAAAGTATATAGAGAGCAAGTACAGTGATTAGACATGACACAACACATCTTTATCTCCCCGAGGACATGACCCTAGATAAAAAAAATATAAAGGTTGAGAATCAGGGTAGAGGACTAAGTAATAGTCGAGTGATTTCTCTCTTTTTCTGTGGAAGAGCATGGTTCTAGCTTAGAGCACCTTATTTGATCCTTCTTTTACTTATCAATATCACTATCAGTATCAATTGTAATATTATTTACTGTTCAATTATATCACTATTGTTCTTGATAGGGTATCGGGTACGGGTTCCCGAACCCGGTAACTTTTGTATAGACCCTATATTTATATAGAGAAATCCATTAAATATATAAAAACTATTTGTTTAAGGTAACAAAGTAAGCTCATGGTCTAGAGGCAGAAATGGAACTTACTTAATCTTTATTTCCCGCCTCAGTGAGGGTTCGATTCCCCTTGGGCACTTACAATAATTTTTTTTTTTTTTTTAAATTTAAGAACGATGTGAACCATAAACTTTAAATCTTGCATCCACTTCTACCCGTAGAGTAATCTTTCTTGAATTTTTCATCTCATCGCACATTTATTATTATGCTACTTTAAGATGTAACTGATCTCACTATATATAATGGTTGTGAGATGATAAAACTGAGGTTGGTGACTTTAAATGAACACATTGCACCAAGGAGTTTACGATCGGCAACCGCACTCTTGTAAAGGATGATTTGTTTTCTTTTTTAATCATCATCTTGTTTCCCCCGATTAATGTCCATTTGATGATTTCACAATTTTTGTTAGACGAGAAACATGATATCTCCCATTTTATAATTCACCTTTTACCTTATTTCTTCAAATTTAATTTTAGTTCTTAATGATTGATATGTCGTACATCTCGACATGTTTTAGAAATAAAGATGTGCTTTAACTATTGAATACATGATTAAATTTGTTGCTCAATCTATCTTACACTCATTTGGTATGTGCGCCATTTGGTTTTAATATTCTGCAGTCTTTCTATTTCAATTTGGAGGAATCCAATCCCAGCAAATTGTTTCTCTATGTTTGGTGCATATACTTAAACATGTCCTGCAGTTTTGAGTTTTTCCCCTTTACAAGTTGACCAAGGATAAATTCCGTAGCAAGATCTTTTGCTTCGAGTTATCTGATTTGCTTTTTGTGATATAGTTTGTTTAAGATACCACACTATCCAATGTAATTTAGTTCCTTAAGTGCCAGAGCTATTCAAGAAGGGCAACAATCTAAGCATCTCTTCAAATGAGCAATAGCTAAATGCTATGTTCAATGCAGGTTGGGTGCCCCGGTCATTCAAGTGGTGTTCTGTACAGTCAACAAGGCAGTACTATGTTTGTCTTGTTGCTCATTGACAAATTTAATATGGGTGTCAATTCTTTCAGTTTGTGGTCCTTTCAAGTGGACAAATCTTAAAAAAACAATATAATTGGCAAAGTGACATATTTATTATTATTATTTTTGAATTAGGAATATAGAATTAGAAAATTATAATTTTTTTGTTAAACTTGAATCGGAATCTTAACTGGGTGTTTCACTTAAGAATGGTGTTAACATCCTATGCATTTAGGATTGTCTTTTTGTGTTTACAGTTAACCATTGCATTTATATTTGTCATCTTTTAATCCATTTGCACCACCCTTCACTAACATTCACACTTCAAATATAAAACAAAACACATTCACACTTCAAATATATGCAAAAACAGAACACATTCACACTTAAAATTGCTTATTGCCATGGACAATCTTAGCAGTTTTATACTCTTTTTGCGTTTGACATTGACAATATTATTGCAAATCGTCAGTTACTTAGTTCACTTGTCGCAAGACTCGAACTTCGGACTTTAAGTTGCAAGTTCATCAACTTTTTCCGATTGAACCAAGCCTGAGGGACAATTTTTATTTTTATTTTTGATGAACTTTCTCCTTTGAATCTATTCAATATCATTATGCTCACAAAATAATCCATCAGCAGGACTAATTGTCTATGGCTAATGATGTTATACATCATCAAACTGATTATGCTATGGATTTCTGTTGTGGTTTTATTTCTAATCACAACCCTTTGAACATTGTAGATGAGAAGGGTAAATTTGATGAGTTGATTGAAGAGAAGGGAGTAAAAATACTTATTGATCCTAAGGCATTGATGCACGTGATTGGTACCAAGATGGATTTTGTAGATGATAAATTGAGGTAAGGGATTTACTTGTCCGTTTCTATATTGTTGGTATTAAGCCTTTTAATTTTGTGTACAAGTGGATCATTTTGCTTTTGGATGAAAAGGACTGGAGACACCTAGTTTAAGTAATCTTACATATTTTGAACCCTAATGCCATGTAACATACTCCTTTAGCTGTTCTGATGTCATTGAAAGTCTGATTATTGTTTGTTTATGTGCAAATTATTCTGGGAGTTTTTCCATTATAAGGTTAGTTTTGAGAAATATGAAGTTATCGACTCCAGAAAATCTTAGTATCAAGACTTACTGTTGGATGAGGGAGACAAAAGTCTTGCATCTTCTTGTTTATCTTCTCGTTTATTGGATTGTCAGTTCATGTTAGTTTTTTGGTAAGCATACTATCTATATGTGTTTCTTTGAGCCGAGAGTCTTTCGGAAACAACCTTTCTACCTAACAAAGTAGAAATAAGGTCTGCATACACTCTACCCTCCCCAGACCCCACTTGTGTGACTATACTGGGTATGTTGTTGTTGTTGTTGTACTATCTATCTGTGTTAGTTTCTGCCGATGTCCCTTTCTGGGGGCAGGGGGGTCCAGAAGAGAAACAAAATAATGCTGGGCTCTGAGACAAATTCTTTAAAGATGTTTCGACTTGTCCAAACCTGTCCCTGTTTCATATGGTGTCCTCCGCAAGCAACTCTTGACGCGTTCTTACATTTTATGTGCAGGTCTGAGTTCATTTTTATTAATCCCAACTCGAAAGGGCAATGCGGTTGTGGTGAGTCTTTCATGACAACAGCCAGTAAAGGTGCTGAAAAGTGAGATGATTTTAATGAGACATGATGTTTATAATGTACTCA</genome_strand>
        <mrna_strand>GAAATTTCAGGTAATTATATTTACAGCCCCCATCTTTCAAAAGAGGAATAACAGGATCCATTTGCGTTAGTGAAGAACCTCCAAAACGGATCGATGGTGTCTCCGGTGCTAGCAAAGGCGGCGGAGAGAATCGGAAATTCAGTCCGGCGGCAAGCAATAACTATTACAGACGCCGCCGCTGCTCGAATTAGCAATCTCCTTCAGCAACGGCAGCGTCCTTTTCTTAAGCTCGGCGTTAAAGCTCGTGGATGCAACGGCTTATCCTACACGCTCAATTACGCCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGAAGGGTAAATTTGATGAGTTGATTGAAGAGAAGGGAGTAAAAATACTTATTGATCCTAAGGCATTGATGCACGTGATTGGTACCAAGATGGATTTTGTAGATGATAAATTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGAGTTCATTTTTATTAATCCCAACTCGAAAGGGCAATGCGGTTGTGGTGAGTCTTTCATGACAACAGCCAGTAAAGGTGCTGAANAGTGAGATGATTTTAATGAGACATGATGTTTATAATGTACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317297" ref_strand="+" ref_description="SGN-E317297 [cTOA-28-H8]">
      <seq>ctccctccaaaaaaaaagaaaaatagaaaaaaaagcagagcatggagttaaattttaaaaattataggaggaaaaaatggaacaacgacatcataaaagaaaagttgggtgccccggtcattcaagtggtgttctgtacagtcaacaaggcagtactatgtttgtcttgttgctcattgacaaatttaatatgggtgtcaattctttcagtttgtggtcctttcaagtggacaaatcttaaaaaaacaatataattggcaaagtgacatatttattattattatttttgaattaggaatatagaattagaaaattataatttttttgttaaacttgaatcggaatcttaactgggtgtttcacttaagaatggtgttaacatcctatgcatttaggattgtctttttgtgtttacagttaaccattgcatttatatttgtcatcttttaatccatttgcaccacccttcactaacattcacacttcaaatataaaacaaaacacattcacacttcaaatatatgcaaaaacagaacacattcacacttaaaattgcttattgccatggacaatcttagcagttttatactctttttgcgtttgacattgacaatattattgcaaatcgtcagttacttagttcacttgtcgcaagactcgaacttcggactttaagttgcaagttcatcaactttttccgattgaaccaagcctgagggacatttttatttttatttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="-" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="27303" stop="23101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27003" g_stop="26901" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26900" i_stop="24039" i_length="2862">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24038" g_stop="23401" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="740" r_length="637" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="-" ref_id="SGN-E317297" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27003" e_stop="26901"/>
          <exon e_start="24038" e_stop="23401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCTCCAAAAAAAAAGAAAAATAGAAAAAAAAGCAGAGCATGGAGTTAAATTTTAAAAATTATAGGAGGAAAAAATGGAACAACGACATCATAAAAGAAAAGTAAGTGCAAAGAATATGAGTATCACATACAATTTTTTACGAGTTTCACATTGATTAATGGTTGGATAATGTTGAAGCATTTAGTTATTGCTCATTTGAAGAGAGGTTAGAATGCTGCCCTCCTTGGATAACTCTGGCACTTAAGGAAGTAAATTATATTGGATAATGTCGTATCTTAAACAAATTTTATCACAGAAAGCAAATCAAATAACTCGAAGCAAAAGATCCTGCTACGCTGGAATTCATCTTGGTCAACCCGTAAAGGGTTTACACAAAACTGGGGGACATGTAAAAGTATATGCAGCAACAGTAAAGAAACGATTTGCTGGGATTGGATTCCTCCAAATAGAAATAGAAAGACGCTGCAATATTAAAACCCTATGACACACATACTAAATAAGTGTAAGATAGATTGAGCTAGAAATTTAATCAAGATCATGTATTCAGTTTTTAAGGAATAAAGAAGGAGATCATTATTTCTAAAACATGTCGAGATGCACGAGATATCAATCATTAAGAACTAAAGTTACATTTGGAGAAATAAGGTAATAAAGTGAATTACAAAATGGGAGATATCCTATTTCTCGTCTAACAAACATCGTGAAATCATCAAACTGATAATCAGGGGAAACAAATCATCCTTAGCAAAAGTACATCAATATTAATTACATTCTAAAAACCCTAGTTTCATATGGATTGTGATAATGTTGATAAGAGAAAACTCAGATCATGCTCACCTTGTTCAGTCGAGAGGTCCTTTCTAGTTGTTTGATAGATGAACTGGAGTGTAGTTGTAGCTTGAAAACTCATTGGTGCAATGTTTTCATTTGAAGTCACCAACCTCGTTTTTATCACCTCACAACCATTATATTCTGTGAGTTTGGTTACATCTTAAAGTAGCATAATAATAAATGCACAATGAGATGACAAAATCCATGAAAGATTACTCTACGAGTAGAGGTGGATCCAAGATTTAAAGTTTATGGTTCTCATTGATCTTAAATTTTTTAAAAAAACTTTATTTTAAGTGCCTATGGGGAATCGAACCCTCATTGAGGCGGAAAATAAAGATTAAGTTCCATTTTTGCCCCTAGACCATGAGCTTACTTTGTTACTAGAAACAAATAGTTTTTATATATTTAATGGATTTCTCATAATAAAAATAGTGTCTATACAAAAGTTATCGGGTTCGAAAACCGTACCCGATACCCTAGCAAGAACAATAGTGATATAATTGAACAATAAATAATATTACAATTGATACTAATAGTGATATTGATAAGTAAAAGAATGATCAAATAAGGTGCTCTAAGCTCTAACCATGCTCTTCCACAGAAAAAGAGAGAAATCACTGTACTATTTACTTAACCATCTACCCTGATTCTCGACCTTTATATTTTTTTTAATCTAGGGTCATGTCCTCGGTGTGAAGAAAATGTGTTGTGTTATTTCTTATCACTGTCCTAACTGTCGAGGCACTTAGTTTTAGTGACGAGATAACTCTAGAGTCCGTAAATTGAATATAGAGTTGAAAACTTTCAAATTTAGTTCGACTTAAACAAAGTATATAGAGAGCAAGTACAGTGATTAGACATGACACAACACATCTTTATCTCCCCGAGGACATGACCCTAGATAAAAAAAATATAAAGGTTGAGAATCAGGGTAGAGGACTAAGTAATAGTCGAGTGATTTCTCTCTTTTTCTGTGGAAGAGCATGGTTCTAGCTTAGAGCACCTTATTTGATCCTTCTTTTACTTATCAATATCACTATCAGTATCAATTGTAATATTATTTACTGTTCAATTATATCACTATTGTTCTTGATAGGGTATCGGGTACGGGTTCCCGAACCCGGTAACTTTTGTATAGACCCTATATTTATATAGAGAAATCCATTAAATATATAAAAACTATTTGTTTAAGGTAACAAAGTAAGCTCATGGTCTAGAGGCAGAAATGGAACTTACTTAATCTTTATTTCCCGCCTCAGTGAGGGTTCGATTCCCCTTGGGCACTTACAATAATTTTTTTTTTTTTTTTAAATTTAAGAACGATGTGAACCATAAACTTTAAATCTTGCATCCACTTCTACCCGTAGAGTAATCTTTCTTGAATTTTTCATCTCATCGCACATTTATTATTATGCTACTTTAAGATGTAACTGATCTCACTATATATAATGGTTGTGAGATGATAAAACTGAGGTTGGTGACTTTAAATGAACACATTGCACCAAGGAGTTTACGATCGGCAACCGCACTCTTGTAAAGGATGATTTGTTTTCTTTTTTAATCATCATCTTGTTTCCCCCGATTAATGTCCATTTGATGATTTCACAATTTTTGTTAGACGAGAAACATGATATCTCCCATTTTATAATTCACCTTTTACCTTATTTCTTCAAATTTAATTTTAGTTCTTAATGATTGATATGTCGTACATCTCGACATGTTTTAGAAATAAAGATGTGCTTTAACTATTGAATACATGATTAAATTTGTTGCTCAATCTATCTTACACTCATTTGGTATGTGCGCCATTTGGTTTTAATATTCTGCAGTCTTTCTATTTCAATTTGGAGGAATCCAATCCCAGCAAATTGTTTCTCTATGTTTGGTGCATATACTTAAACATGTCCTGCAGTTTTGAGTTTTTCCCCTTTACAAGTTGACCAAGGATAAATTCCGTAGCAAGATCTTTTGCTTCGAGTTATCTGATTTGCTTTTTGTGATATAGTTTGTTTAAGATACCACACTATCCAATGTAATTTAGTTCCTTAAGTGCCAGAGCTATTCAAGAAGGGCAACAATCTAAGCATCTCTTCAAATGAGCAATAGCTAAATGCTATGTTCAATGCAGGTTGGGTGCCCCGGTCATTCAAGTGGTGTTCTGTACAGTCAACAAGGCAGTACTATGTTTGTCTTGTTGCTCATTGACAAATTTAATATGGGTGTCAATTCTTTCAGTTTGTGGTCCTTTCAAGTGGACAAATCTTAAAAAAACAATATAATTGGCAAAGTGACATATTTATTATTATTATTTTTGAATTAGGAATATAGAATTAGAAAATTATAATTTTTTTGTTAAACTTGAATCGGAATCTTAACTGGGTGTTTCACTTAAGAATGGTGTTAACATCCTATGCATTTAGGATTGTCTTTTTGTGTTTACAGTTAACCATTGCATTTATATTTGTCATCTTTTAATCCATTTGCACCACCCTTCACTAACATTCACACTTCAAATATAAAACAAAACACATTCACACTTCAAATATATGCAAAAACAGAACACATTCACACTTAAAATTGCTTATTGCCATGGACAATCTTAGCAGTTTTATACTCTTTTTGCGTTTGACATTGACAATATTATTGCAAATCGTCAGTTACTTAGTTCACTTGTCGCAAGACTCGAACTTCGGACTTTAAGTTGCAAGTTCATCAACTTTTTCCGATTGAACCAAGCCTGAGGGACAATTTTTATTTTTATTTTTG</genome_strand>
        <mrna_strand>CTCCCTCCAAAAAAAAAGAAAAATAGAAAAAAAAGCAGAGCATGGAGTTAAATTTTAAAAATTATAGGAGGAAAAAATGGAACAACGACATCATAAAAGAAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGGTGCCCCGGTCATTCAAGTGGTGTTCTGTACAGTCAACAAGGCAGTACTATGTTTGTCTTGTTGCTCATTGACAAATTTAATATGGGTGTCAATTCTTTCAGTTTGTGGTCCTTTCAAGTGGACAAATCTTAAAAAAACAATATAATTGGCAAAGTGACATATTTATTATTATTATTTTTGAATTAGGAATATAGAATTAGAAAATTATAATTTTTTTGTTAAACTTGAATCGGAATCTTAACTGGGTGTTTCACTTAAGAATGGTGTTAACATCCTATGCATTTAGGATTGTCTTTTTGTGTTTACAGTTAACCATTGCATTTATATTTGTCATCTTTTAATCCATTTGCACCACCCTTCACTAACATTCACACTTCAAATATAAAACAAAACACATTCACACTTCAAATATATGCAAAAACAGAACACATTCACACTTAAAATTGCTTATTGCCATGGACAATCTTAGCAGTTTTATACTCTTTTTGCGTTTGACATTGACAATATTATTGCAAATCGTCAGTTACTTAGTTCACTTGTCGCAAGACTCGAACTTCGGACTTTAAGTTGCAAGTTCATCAACTTTTTCCGATTGAACCAAGCCTGAGGGAC-ATTTTTATTTTTATTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305692" ref_strand="+" ref_description="SGN-E305692 [cLEX-14-P4]">
      <seq>tcataaaagaaaagttgggtgccccggtcattcaagtggtgttctgtacagtcaacaaggcagtactatgtttgtcttgttgctcattgacaaatttaatatgggtgtcaattctttcagtttgtggtcctttcaagtggacaaatcttaaaaaaacaatataattggcaaagtgacatatttattattattatttttgaattaggaatatagaattagaaaattataatttttttgttaaacttgaatcggaatcttaactgggtgtttcacttaagaatggtgttaacatcctatgcatttaggattgtctttttgtgtttacagttaaccattgcatttatatttgtcatcttttaatccatttgcaccacccttcactaacattcacacttcaaatataaaacaaaacacattcacacttcaaatatatgcaaaaacagaacacattcacacttaaaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="-" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="24340" stop="23286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24038" g_stop="23586" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="466" r_length="453" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="-" ref_id="SGN-E305692" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24038" e_stop="23586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGGTGCCCCGGTCATTCAAGTGGTGTTCTGTACAGTCAACAAGGCAGTACTATGTTTGTCTTGTTGCTCATTGACAAATTTAATATGGGTGTCAATTCTTTCAGTTTGTGGTCCTTTCAAGTGGACAAATCTTAAAAAAACAATATAATTGGCAAAGTGACATATTTATTATTATTATTTTTGAATTAGGAATATAGAATTAGAAAATTATAATTTTTTTGTTAAACTTGAATCGGAATCTTAACTGGGTGTTTCACTTAAGAATGGTGTTAACATCCTATGCATTTAGGATTGTCTTTTTGTGTTTACAGTTAACCATTGCATTTATATTTGTCATCTTTTAATCCATTTGCACCACCCTTCACTAACATTCACACTTCAAATATAAAACAAAACACATTCACACTTCAAATATATGCAAAAACAGAACACATTCACACTTAAAATTGC</genome_strand>
        <mrna_strand>GTTGGGTGCCCCGGTCATTCAAGTGGTGTTCTGTACAGTCAACAAGGCAGTACTATGTTTGTCTTGTTGCTCATTGACAAATTTAATATGGGTGTCAATTCTTTCAGTTTGTGGTCCTTTCAAGTGGACAAATCTTAAAAAAACAATATAATTGGCAAAGTGACATATTTATTATTATTATTTTTGAATTAGGAATATAGAATTAGAAAATTATAATTTTTTTGTTAAACTTGAATCGGAATCTTAACTGGGTGTTTCACTTAAGAATGGTGTTAACATCCTATGCATTTAGGATTGTCTTTTTGTGTTTACAGTTAACCATTGCATTTATATTTGTCATCTTTTAATCCATTTGCACCACCCTTCACTAACATTCACACTTCAAATATAAAACAAAACACATTCACACTTCAAATATATGCAAAAACAGAACACATTCACACTTAAAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250699" ref_strand="+" ref_description="SGN-E250699 [cLEG-7-K7]">
      <seq>ttatctgattttcttgttgtgatatagttagtataagatacgagcactagggaatgtaatttagttccttaagtgccaaagctattcaagaagggcaacaatctaagcatctcttcaaatgagcaatatctaaatgctatgttcaatgcaggttgggtgccccggtcattcaagtggtgttctgtacagtcaacaaggcagtactatgtttgtcttgttgctcattgacaaatttaatatgggtgtcaattctttcattttgtggtcctttcaagtggacaaatcttaaaaaaacaatataattggcaaagtgacatatttattattattatttttgaattaggaatatagaattagaaaattataatttttttgttaaacttgaatcggaatcttaactgggtgtttcacttaagaatggtgttaacatcctatgcatttaggattgtctttttgtgtttacagttaaccattgcatttatatttgtcatctcttaatccatttgcaccacccttcactaacattcacactttaaatataaaacaaaacacattcccacttcaaatatatgcaaaaacagaacacattcacactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="-" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="24437" stop="23294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24188" g_stop="23594" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="-" ref_id="SGN-E250699" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24188" e_stop="23594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCTGATTTGCTTTTTGTGATATAGTTTGTTTAAGATACCA-CACTATCCAATGTAATTTAGTTCCTTAAGTGCCAGAGCTATTCAAGAAGGGCAACAATCTAAGCATCTCTTCAAATGAGCAATAGCTAAATGCTATGTTCAATGCAGGTTGGGTGCCCCGGTCATTCAAGTGGTGTTCTGTACAGTCAACAAGGCAGTACTATGTTTGTCTTGTTGCTCATTGACAAATTTAATATGGGTGTCAATTCTTTCAGTTTGTGGTCCTTTCAAGTGGACAAATCTTAAAAAAACAATATAATTGGCAAAGTGACATATTTATTATTATTATTTTTGAATTAGGAATATAGAATTAGAAAATTATAATTTTTTTGTTAAACTTGAATCGGAATCTTAACTGGGTGTTTCACTTAAGAATGGTGTTAACATCCTATGCATTTAGGATTGTCTTTTTGTGTTTACAGTTAACCATTGCATTTATATTTGTCATCTTTTAATCCATTTGCACCACCCTTCACTAACATTCACACTTCAAATATAAAACAAAACACATTCACACTTCAAATATATGCAAAAACAGAACACATTCACACTT</genome_strand>
        <mrna_strand>TTATCTGATTTTCTTGTTGTGATATAGTTAGTATAAGATACGAGCACTAGGGAATGTAATTTAGTTCCTTAAGTGCCAAAGCTATTCAAGAAGGGCAACAATCTAAGCATCTCTTCAAATGAGCAATATCTAAATGCTATGTTCAATGCAGGTTGGGTGCCCCGGTCATTCAAGTGGTGTTCTGTACAGTCAACAAGGCAGTACTATGTTTGTCTTGTTGCTCATTGACAAATTTAATATGGGTGTCAATTCTTTCATTTTGTGGTCCTTTCAAGTGGACAAATCTTAAAAAAACAATATAATTGGCAAAGTGACATATTTATTATTATTATTTTTGAATTAGGAATATAGAATTAGAAAATTATAATTTTTTTGTTAAACTTGAATCGGAATCTTAACTGGGTGTTTCACTTAAGAATGGTGTTAACATCCTATGCATTTAGGATTGTCTTTTTGTGTTTACAGTTAACCATTGCATTTATATTTGTCATCTCTTAATCCATTTGCACCACCCTTCACTAACATTCACACTTTAAATATAAAACAAAACACATTCCCACTTCAAATATATGCAAAAACAGAACACATTCACACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213960" ref_strand="+" ref_description="SGN-E213960 [cLEC-80-C18]">
      <seq>aatacaccacttccctggaagtcaacaactgtatctattaaatcagatctaaccattttcctgcagtgctcaaaaaaatccgtagaggcatcaggtgccagagctttgttactagcacaaccctctaccgccctcttcaactcttcctcctgaatttccctctctagccattcactctcctccctgccaatatgacgaaccctaaaccccccaatttaggcccccaatctgctacctctaacaaacgcttgtaaaaatctacaattgccttttctacttcctccttttccacatgcatcacccatttaccttttccgactatataaaagtccttctcctattagcagttactaccctatggaaatgttttttgttggagtccccctctacaaccattatgaccctcaagttctgtgtcaaaccaatctcttgggccaaagccaactcatctagctcccttttcaacccctctaaaattgttctttcctcaattattacaagactaatgacttaattcatgtgtaacttcgttcaaggcttcaagcttcaaatttgcgatgatcatcaaatggagaatattgccatctggttttttgttttagaggaggataaaaaagttggcaaatgggctattctagtggtatgacgtaagcaactttgaagaacttgaatgatattttatcaggtaacacctctgcccattcctttctcacgaaaagcactaaagcaattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="-" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="28546" stop="27212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28246" g_stop="27512" g_length="735"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="734" r_length="734" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="-" ref_id="SGN-E213960" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28246" e_stop="27512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACACCACTTCCCTGGAAGTCAACAACTGTATCTATTAAATCAGATCTAACCATTTTCCTGCAGTGCTCAAAAAAATCCGTAGAGGCATCAGGTGCCAGAGCTTTGTTACTAGCACAACCCTCTACCGCCCTCTTCAACTCTTCCTCCTGAATTTCCCTCTCTAGCCATTCACTCTCCTCCCTGCCAATATGACGAACCCTAAACCCCCCAATTTAGGCCCCCAATCTGCTACCTCTAACAAACGCTTGTAAAAATCTACAATTGCCTTTTCTACTTCCTCCTTTTCCACATGCATCACCCATTTACCTTTTCCGACTATATAAAAGTCCTTCTCCTATTAGCAGTTACTACCCTATGGAAATGTTTTTTGTTGGAGTCCCCCTCTACAACCATTATGACCCTCAAGTTCTGTGTCAAACCAATCTCTTGGGCCAAAGCCAACTCATCTAGCTCCCTTTTCAACCCCTCTAAAATTGTTCTTTCCTCAATTATTACAAGACTAATGACTTAATTCATGTGTAACTTCGTTCAAGGCTTCAAGCTTCAAATTTGCGATGATCATCAAATGGAGAATATTGCCATCTGGTTTTTTGTTTTAGAGGAGGATAAAAAAGTTGGCAAATGGGCTATTCTAGTGGTATGATGTAAGCAACTTTGAAGAACTTGAATGATATTTTATCAGGTAACACCTCTGCCAATTCCTTCTCAACGAAAAAGCACTAAAGCAATTAA</genome_strand>
        <mrna_strand>AATACACCACTTCCCTGGAAGTCAACAACTGTATCTATTAAATCAGATCTAACCATTTTCCTGCAGTGCTCAAAAAAATCCGTAGAGGCATCAGGTGCCAGAGCTTTGTTACTAGCACAACCCTCTACCGCCCTCTTCAACTCTTCCTCCTGAATTTCCCTCTCTAGCCATTCACTCTCCTCCCTGCCAATATGACGAACCCTAAACCCCCCAATTTAGGCCCCCAATCTGCTACCTCTAACAAACGCTTGTAAAAATCTACAATTGCCTTTTCTACTTCCTCCTTTTCCACATGCATCACCCATTTACCTTTTCCGACTATATAAAAGTCCTTCTCCTATTAGCAGTTACTACCCTATGGAAATGTTTTTTGTTGGAGTCCCCCTCTACAACCATTATGACCCTCAAGTTCTGTGTCAAACCAATCTCTTGGGCCAAAGCCAACTCATCTAGCTCCCTTTTCAACCCCTCTAAAATTGTTCTTTCCTCAATTATTACAAGACTAATGACTTAATTCATGTGTAACTTCGTTCAAGGCTTCAAGCTTCAAATTTGCGATGATCATCAAATGGAGAATATTGCCATCTGGTTTTTTGTTTTAGAGGAGGATAAAAAAGTTGGCAAATGGGCTATTCTAGTGGTATGACGTAAGCAACTTTGAAGAACTTGAATGATATTTTATCAGGTAACACCTCTGCCCATTCCTTTCTCACG-AAAAGCACTAAAGCAATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315914" ref_strand="+" ref_description="SGN-E315914 [cTOA-26-D7]">
      <seq>ggttatccaccggagtgacttgcctatgtagaggggccggaaatcttgggaactaagtcacctctcaatcgtcgaaattccttccaaatcttagatcccaaaaattatctccaccataggcccacctaatttcttggaccttcaattctccttgacatgacattctaaacaaattctgaagattatctttcagtgagttatctctacccaacctacgtcccgggaaattctctccttccattccaaccttgaatgagatacttttgctaaaatcatcccatcccttcattatgttcctccacaaaccgcacccaaaaggcataatgacatctctagttctcctaaatctgcttcccactagacaaataggtctgtagtcctccatgcaccatgctcctccctcttaggggtaatgacaactaatgaagcattcaaactcttttcaaatacaccacttccctggaagtcaacaactgtatctattaaatcagatctaaccattttcctgcagtgctcaaaaaaatccgtagaggcatcaggtgccagagctttgttactagcacaaccctctaccgccctcttcaactcttcctcctgaatttccctctctagccattcactctcctccctgccaatatgacgaaccctaaaccccccaatttaggcccccaatctgctacctctaacaaacgcttgtaaaaatctacaattgccttttctacttcctcccttttcacatgcatcacccatttaccttttccgactatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="-" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="28991" stop="27623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28691" g_stop="27923" g_length="769"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="769" r_length="769" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="-" ref_id="SGN-E315914" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28691" e_stop="27923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTATCCACCGGAGTGACTTGCCTATGTAGAGGGGCCGGAAATCTTGGGAACTAAGTCACCTCTCAATCGTCGAAATTCCTTCCAAATCTTAGATCCCAAAAATTATCTCCACCATAGGCCCACCTAATTTCTTGGACCTTCAATTCTCCTTGACATGACATTCTAAACAAATTCTGAAGATTATCTTTCAGTGAGTTATCTCTACCCAACCTACGTCCCGGGAAATTCTCTCCTTCCATTCCAACCTTGAATGAGATACTTTTGCTAAAATCATCCCATCCCTTCATTATGTTCCTCCACAAACCGCACCCAAAAGGCATAATGACATCTCTAGTTCTCCTAAATCTGCTTCCCACTAGACAAATAGGTCTGTAGTCCTCCATGCACCATGCTCCTCCCTCTTAGGGGTAATGACAACTAATGAAGCATTCAAACTCTTTTCAAATACACCACTTCCCTGGAAGTCAACAACTGTATCTATTAAATCAGATCTAACCATTTTCCTGCAGTGCTCAAAAAAATCCGTAGAGGCATCAGGTGCCAGAGCTTTGTTACTAGCACAACCCTCTACCGCCCTCTTCAACTCTTCCTCCTGAATTTCCCTCTCTAGCCATTCACTCTCCTCCCTGCCAATATGACGAACCCTAAACCCCCCAATTTAGGCCCCCAATCTGCTACCTCTAACAAACGCTTGTAAAAATCTACAATTGCCTTTTCTACTTCCTCCTTTTCCACATGCATCACCCATTTACCTTTTCCGACTATAT</genome_strand>
        <mrna_strand>GGTTATCCACCGGAGTGACTTGCCTATGTAGAGGGGCCGGAAATCTTGGGAACTAAGTCACCTCTCAATCGTCGAAATTCCTTCCAAATCTTAGATCCCAAAAATTATCTCCACCATAGGCCCACCTAATTTCTTGGACCTTCAATTCTCCTTGACATGACATTCTAAACAAATTCTGAAGATTATCTTTCAGTGAGTTATCTCTACCCAACCTACGTCCCGGGAAATTCTCTCCTTCCATTCCAACCTTGAATGAGATACTTTTGCTAAAATCATCCCATCCCTTCATTATGTTCCTCCACAAACCGCACCCAAAAGGCATAATGACATCTCTAGTTCTCCTAAATCTGCTTCCCACTAGACAAATAGGTCTGTAGTCCTCCATGCACCATGCTCCTCCCTCTTAGGGGTAATGACAACTAATGAAGCATTCAAACTCTTTTCAAATACACCACTTCCCTGGAAGTCAACAACTGTATCTATTAAATCAGATCTAACCATTTTCCTGCAGTGCTCAAAAAAATCCGTAGAGGCATCAGGTGCCAGAGCTTTGTTACTAGCACAACCCTCTACCGCCCTCTTCAACTCTTCCTCCTGAATTTCCCTCTCTAGCCATTCACTCTCCTCCCTGCCAATATGACGAACCCTAAACCCCCCAATTTAGGCCCCCAATCTGCTACCTCTAACAAACGCTTGTAAAAATCTACAATTGCCTTTTCTACTTCCTCCCTTTTCACATGCATCACCCATTTACCTTTTCCGACTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366158" ref_strand="+" ref_description="SGN-E366158 [cLPT-1-A15]">
      <seq>ctttgttagctgaatacaacaccaccaatagtgctgaaagaaaaaactggactggaacttcagatattatctaggaggtcgattatattttttctggattaatcagaatagtttgagcttgagtttgggaaaattctgttatggctacttgtacgtcagctgtatttatgcctcctgatacgcggcggtcacgaggggtcttgactgttcttggtggtagagtttgccccttgaaaattcaagatgagaagattggatacttgggcgttaaccaaaaggatacctcaagtttgcctcaattcaaatgttcagccaattcccagagtgtcaatcagtatcaaaacaaagacccctttctaaatttacatcccgaaatttctatgctcagaggcgaaggtaacaatacaatgactacctctagacaagaaagctctagtggaaatgtcagtgagagtttgatggattcatcaagctcgaacaattttaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="+" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="36479" stop="39286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36779" g_stop="36808" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36809" i_stop="38526" i_length="1718">
            <donor d_prob="0.467" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38527" g_stop="38986" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="490" r_length="460" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="+" ref_id="SGN-E366158" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36779" e_stop="36808"/>
          <exon e_start="38527" e_stop="38986"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGTGAGCTGAATACAACACCACCAATAGTAGCCAAAACTCTGTCTTTCTCTATATTTCTTCAAAATTTCAAAGGATTTGTGCAATTCTCTTTTTGGGTTTTTGTCTCTTCAATTTCAGGTGCCATTTTTGAAATGATAGGTTTGCCTTTGTTTTGAGAATCTTGATACAATCTATACAATTGTGAGGTGATTTATTCTTATGGGGTTTTTTGTGTAATGCTACTTAATAAAGACTGTAACTTTTTGTGTTCTATTGCATTTTCTCAATTTTTACAATTGTGAGGTTCTTTGTTCTTATGGGGTTGTTTTGTTTTTGGGTTTGTGTAATGCTATTTGATAAAGATTGCATTTTTTTACCTTCATGCTATTGAATTTTCTCAATCTATATGATTATGAGGTTCTTTATTCTTAAGGGTTGTTTTCTTTTTGGGTTTGTGTAATGGTATTTGATAAAGATTGTTTTTTTTTCTTCCTGCTATTGAATTTTCTCAATCTATACAGTTTGTGAGGTTTTTTGTGCTTATGGAGTTGTTTCTTTGTGGGTTTGTGTAATGTTATTTAATAAAGATTGTTTTCTTCTTCTTCATGCTATTGAATTTTCTCAATCTATACAGTTTGTGAGGTTTTTTGTGCTTATGGAGTTGTTTCTTTGTGGGTTTGTGTAATGTTAGTTAATAAAGATTGTTTTTTTCTTCTTCCTGCTATTGAATTTTTTCAATCTATACAATTGTGAGGTTCTTTATTCTTGTGTTTTTTTCTTTCTTGAGTTTGTGTAATGCTACTTGATAAAGATTGCATTTATTTTTCCTGTAATTGATGTTTCTCAATCTATATATTTGTGAGGTTCTTTATTCTTATGGGGTTGTTTTCTTTGTGGGTTTGTAAATGTTAATAAGCATTGTATTTTTTCTTCTTCCTGCTAATTGAATTTTCACAATTTTATACATTTGCGAGGTTCTTTATTCTTATGAGGTTGTTTCCTTTGTGGGTTTGTGTAATGCTCTACTTGATAAATATTGCCTTTTTCTTCCTGCTACTGTTTTTTTCAATCTATACACTTGTGAGGTTCTTTATTCTTATGCTGTTGTTTTCTTTTGGGGTTGTGTAATGCTACTTGATAAAGATGGTCTTTCTTTTTATGACAACGGAACCCACAACTGCTAAACTCAGTTCATGTGCAATAGCTCGCAAACCACACAAAAGATTTAAACTGCACTAGGCAACCTTGTGCGGTGAGCTTGACCTAGAAAGCAAGGGGTTTTGAACTTGAGACCTCCATTATGGGAATCCCAAGCCAAACCATCTAAGTTTTCTTCCAGCTATTGCATTTTCTCAAGCTATACAATTTTGAGGATCTTTATTCTTATGGGTTGTTTTCTTTTTGGGTTTGTGTAATGCTACTTGATAAGTATTGCCTTTTTCTTCCTGCTATTGCATTTTCTCAACCTATACAATTATAAGGTTCTTTATTCTTATGGAGTTAATTTCTTTTTGGGTTGGTGTAATGCTACTCAATAAAGATTGTCTTTTTTCTTCTAATTTCTGCTCTGCTGCTATTAGAGCTGTGTTAAACTTTGTGCTGTATTATACTCTCTAAATCTGAAAGTGTGGCACAGTTTTGGAGTTTGGTAACTCATACGTGTTAGTAAATTTAGATTTGCGGACTAGAACCCCCTTTATAGCTACCACTTACAAGCTTCTTTTAAACAATGTGCGCTGCTTTTTCCTGTTTTATTGATTGGCAGGTGCTGAAAGAAAAAACTGGACTGGAACTTCAGATATTATCTAGGAGGTCGATTATATTTTTTCTGGATTAATCAGAATAGTTTGAGCTTGAGTTTGGGAATATTCTGTTATGGCTACTTGTACGTCAGCTGTATTTATGCCTCCTGATACGCGGCGGTCACGAGGGGTCTTGACTGTTCTTGGTGGTAGAGTTTGCCCCTTGAAAATTCAAGATGAGAAGATTGGATACTTGGGCGTTAACCAAAAGGGTACCTCAAGTTTGCCTCAATTCAAATGTTCAGCCAATTCCCAGAGTGTCAATCAGTATCAAAACAAAGACCCCTTTCTAAATTTACATCCCGAAATTTCTATGCTCAGAGGCGAAGGTAACAATACAATGACTACCTCTAGACAAGAAAGCTCTAGTGGAAATGTCAGTGAGAGTTTGATGGATTCATCAAGCTCGAACAATTTTAATGA</genome_strand>
        <mrna_strand>CTTTGTTAGCTGAATACAACACCACCAATA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAAAGAAAAAACTGGACTGGAACTTCAGATATTATCTAGGAGGTCGATTATATTTTTTCTGGATTAATCAGAATAGTTTGAGCTTGAGTTTGGGAAAATTCTGTTATGGCTACTTGTACGTCAGCTGTATTTATGCCTCCTGATACGCGGCGGTCACGAGGGGTCTTGACTGTTCTTGGTGGTAGAGTTTGCCCCTTGAAAATTCAAGATGAGAAGATTGGATACTTGGGCGTTAACCAAAAGGATACCTCAAGTTTGCCTCAATTCAAATGTTCAGCCAATTCCCAGAGTGTCAATCAGTATCAAAACAAAGACCCCTTTCTAAATTTACATCCCGAAATTTCTATGCTCAGAGGCGAAGGTAACAATACAATGACTACCTCTAGACAAGAAAGCTCTAGTGGAAATGTCAGTGAGAGTTTGATGGATTCATCAAGCTCGAACAATTTTAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345772" ref_strand="+" ref_description="SGN-E345772 [cTOF-18-M21]">
      <seq>tagtagccaaaactctgtctttctctatatttcttcaaaatttcaaaggatttgtgcaattctctttttgggtttttgtctcttcaatttcaggtgctgaaagaaaaaactggactggaacttcagatattatctaggaggtcgattatattttttctggattaatcagaatagtttgagcttgagtttgggaatattctgttatggctacttgtacgtcagctgtatttatgcctcctgatacgcggcggtcacgaggggtcttgactgttcttggtggtagagtttgccccttgaaaattcaagatgagaagattggatacttgggcgttaaccaaaagggtacctcaagtttgcctcaattcaaatgttcagccagattcccagagtgtcaatcagtatcaaaacaaagacccctttctaaatttacatcccgaaatttctatgctcagaggcgaaggtaacaatacaatgactacctctagacaagaaagctctagtggaaatgtcagtgagagtttgatggattcatcaagctcgaacaattttaatgaggccaaaatcaaggtggttggtgtaggaggtgggtggatcaaatgcagttaatcgcatgattgagagctctatgaaaggtgtagagttttggattgtgaacacggatatccaagcaatgaggatgtcacctgtaaatcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="+" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="36507" stop="39426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36807" g_stop="36899" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36900" i_stop="38526" i_length="1627">
            <donor d_prob="0.094" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38527" g_stop="39126" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="695" r_length="602" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="+" ref_id="SGN-E345772" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36807" e_stop="36899"/>
          <exon e_start="38527" e_stop="39126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTAGCCAAAACTCTGTCTTTCTCTATATTTCTTCAAAATTTCAAAGGATTTGTGCAATTCTCTTTTTGGGTTTTTGTCTCTTCAATTTCAGGTGCCATTTTTGAAATGATAGGTTTGCCTTTGTTTTGAGAATCTTGATACAATCTATACAATTGTGAGGTGATTTATTCTTATGGGGTTTTTTGTGTAATGCTACTTAATAAAGACTGTAACTTTTTGTGTTCTATTGCATTTTCTCAATTTTTACAATTGTGAGGTTCTTTGTTCTTATGGGGTTGTTTTGTTTTTGGGTTTGTGTAATGCTATTTGATAAAGATTGCATTTTTTTACCTTCATGCTATTGAATTTTCTCAATCTATATGATTATGAGGTTCTTTATTCTTAAGGGTTGTTTTCTTTTTGGGTTTGTGTAATGGTATTTGATAAAGATTGTTTTTTTTTCTTCCTGCTATTGAATTTTCTCAATCTATACAGTTTGTGAGGTTTTTTGTGCTTATGGAGTTGTTTCTTTGTGGGTTTGTGTAATGTTATTTAATAAAGATTGTTTTCTTCTTCTTCATGCTATTGAATTTTCTCAATCTATACAGTTTGTGAGGTTTTTTGTGCTTATGGAGTTGTTTCTTTGTGGGTTTGTGTAATGTTAGTTAATAAAGATTGTTTTTTTCTTCTTCCTGCTATTGAATTTTTTCAATCTATACAATTGTGAGGTTCTTTATTCTTGTGTTTTTTTCTTTCTTGAGTTTGTGTAATGCTACTTGATAAAGATTGCATTTATTTTTCCTGTAATTGATGTTTCTCAATCTATATATTTGTGAGGTTCTTTATTCTTATGGGGTTGTTTTCTTTGTGGGTTTGTAAATGTTAATAAGCATTGTATTTTTTCTTCTTCCTGCTAATTGAATTTTCACAATTTTATACATTTGCGAGGTTCTTTATTCTTATGAGGTTGTTTCCTTTGTGGGTTTGTGTAATGCTCTACTTGATAAATATTGCCTTTTTCTTCCTGCTACTGTTTTTTTCAATCTATACACTTGTGAGGTTCTTTATTCTTATGCTGTTGTTTTCTTTTGGGGTTGTGTAATGCTACTTGATAAAGATGGTCTTTCTTTTTATGACAACGGAACCCACAACTGCTAAACTCAGTTCATGTGCAATAGCTCGCAAACCACACAAAAGATTTAAACTGCACTAGGCAACCTTGTGCGGTGAGCTTGACCTAGAAAGCAAGGGGTTTTGAACTTGAGACCTCCATTATGGGAATCCCAAGCCAAACCATCTAAGTTTTCTTCCAGCTATTGCATTTTCTCAAGCTATACAATTTTGAGGATCTTTATTCTTATGGGTTGTTTTCTTTTTGGGTTTGTGTAATGCTACTTGATAAGTATTGCCTTTTTCTTCCTGCTATTGCATTTTCTCAACCTATACAATTATAAGGTTCTTTATTCTTATGGAGTTAATTTCTTTTTGGGTTGGTGTAATGCTACTCAATAAAGATTGTCTTTTTTCTTCTAATTTCTGCTCTGCTGCTATTAGAGCTGTGTTAAACTTTGTGCTGTATTATACTCTCTAAATCTGAAAGTGTGGCACAGTTTTGGAGTTTGGTAACTCATACGTGTTAGTAAATTTAGATTTGCGGACTAGAACCCCCTTTATAGCTACCACTTACAAGCTTCTTTTAAACAATGTGCGCTGCTTTTTCCTGTTTTATTGATTGGCAGGTGCTGAAAGAAAAAACTGGACTGGAACTTCAGATATTATCTAGGAGGTCGATTATATTTTTTCTGGATTAATCAGAATAGTTTGAGCTTGAGTTTGGGAATATTCTGTTATGGCTACTTGTACGTCAGCTGTATTTATGCCTCCTGATACGCGGCGGTCACGAGGGGTCTTGACTGTTCTTGGTGGTAGAGTTTGCCCCTTGAAAATTCAAGATGAGAAGATTGGATACTTGGGCGTTAACCAAAAGGGTACCTCAAGTTTGCCTCAATTCAAATGTTCAGCCA-ATTCCCAGAGTGTCAATCAGTATCAAAACAAAGACCCCTTTCTAAATTTACATCCCGAAATTTCTATGCTCAGAGGCGAAGGTAACAATACAATGACTACCTCTAGACAAGAAAGCTCTAGTGGAAATGTCAGTGAGAGTTTGATGGATTCATCAAGCTCGAACAATTTTAATGAGGCCAAAATCAAGGTGGTTGGTGTAGGAGGT-GGTGGATCAAATGCAGTTAATCGCATGATTGAGAGCTCTATGAAGGGTGTAGAGTTTTGGATTGTGAACACGGATATCCAAGCAATGAGGATGTCACCTGTAAATCCTG</genome_strand>
        <mrna_strand>TAGTAGCCAAAACTCTGTCTTTCTCTATATTTCTTCAAAATTTCAAAGGATTTGTGCAATTCTCTTTTTGGGTTTTTGTCTCTTCAATTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAAAGAAAAAACTGGACTGGAACTTCAGATATTATCTAGGAGGTCGATTATATTTTTTCTGGATTAATCAGAATAGTTTGAGCTTGAGTTTGGGAATATTCTGTTATGGCTACTTGTACGTCAGCTGTATTTATGCCTCCTGATACGCGGCGGTCACGAGGGGTCTTGACTGTTCTTGGTGGTAGAGTTTGCCCCTTGAAAATTCAAGATGAGAAGATTGGATACTTGGGCGTTAACCAAAAGGGTACCTCAAGTTTGCCTCAATTCAAATGTTCAGCCAGATTCCCAGAGTGTCAATCAGTATCAAAACAAAGACCCCTTTCTAAATTTACATCCCGAAATTTCTATGCTCAGAGGCGAAGGTAACAATACAATGACTACCTCTAGACAAGAAAGCTCTAGTGGAAATGTCAGTGAGAGTTTGATGGATTCATCAAGCTCGAACAATTTTAATGAGGCCAAAATCAAGGTGGTTGGTGTAGGAGGTGGGTGGATCAAATGCAGTTAATCGCATGATTGAGAGCTCTATGAAAGGTGTAGAGTTTTGGATTGTGAACACGGATATCCAAGCAATGAGGATGTCACCTGTAAATCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329084" ref_strand="+" ref_description="SGN-E329084 [cTOC-24-L7]">
      <seq>tttttgtctcttcaatttcaggtgctgaaagaaaaaactggactggaacttcagatattatctaggaggtcgattatattttttctggattaatcagaatagtttgagcttgagtttgggaatattctgttatggctacttgtacgtcagctgtatttatgcctcctgatacgcggcggtcacgaggggtcttgactgttcttggtggtagagtttgccccttgaaaattcaagatgagaagattggatacttgggcgttaaccaaaagggtacctcaagtttgcctcaattcaaatgttcagccaattcccagagtgtcaatcagtatcaaaacaaagacccctttctaaatttacatcccgaaatttctatgctcagaggcgaaggtaacaatacaatgactacctctagacaagaaagctctagtggaaatgtcaatgaaagtttgatggattcatcagagctcgaacaattttaatgaggccaacatcaaggttggttggtgtaagaagcggtggatcaaatgcagtttatcgcatgattgaaagctctatgaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="+" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="36579" stop="39363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36879" g_stop="36899" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36900" i_stop="38526" i_length="1627">
            <donor d_prob="0.094" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38527" g_stop="39063" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="560" r_length="539" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="+" ref_id="SGN-E329084" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36879" e_stop="36899"/>
          <exon e_start="38527" e_stop="39063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGTCTCTTCAATTTCAGGTGCCATTTTTGAAATGATAGGTTTGCCTTTGTTTTGAGAATCTTGATACAATCTATACAATTGTGAGGTGATTTATTCTTATGGGGTTTTTTGTGTAATGCTACTTAATAAAGACTGTAACTTTTTGTGTTCTATTGCATTTTCTCAATTTTTACAATTGTGAGGTTCTTTGTTCTTATGGGGTTGTTTTGTTTTTGGGTTTGTGTAATGCTATTTGATAAAGATTGCATTTTTTTACCTTCATGCTATTGAATTTTCTCAATCTATATGATTATGAGGTTCTTTATTCTTAAGGGTTGTTTTCTTTTTGGGTTTGTGTAATGGTATTTGATAAAGATTGTTTTTTTTTCTTCCTGCTATTGAATTTTCTCAATCTATACAGTTTGTGAGGTTTTTTGTGCTTATGGAGTTGTTTCTTTGTGGGTTTGTGTAATGTTATTTAATAAAGATTGTTTTCTTCTTCTTCATGCTATTGAATTTTCTCAATCTATACAGTTTGTGAGGTTTTTTGTGCTTATGGAGTTGTTTCTTTGTGGGTTTGTGTAATGTTAGTTAATAAAGATTGTTTTTTTCTTCTTCCTGCTATTGAATTTTTTCAATCTATACAATTGTGAGGTTCTTTATTCTTGTGTTTTTTTCTTTCTTGAGTTTGTGTAATGCTACTTGATAAAGATTGCATTTATTTTTCCTGTAATTGATGTTTCTCAATCTATATATTTGTGAGGTTCTTTATTCTTATGGGGTTGTTTTCTTTGTGGGTTTGTAAATGTTAATAAGCATTGTATTTTTTCTTCTTCCTGCTAATTGAATTTTCACAATTTTATACATTTGCGAGGTTCTTTATTCTTATGAGGTTGTTTCCTTTGTGGGTTTGTGTAATGCTCTACTTGATAAATATTGCCTTTTTCTTCCTGCTACTGTTTTTTTCAATCTATACACTTGTGAGGTTCTTTATTCTTATGCTGTTGTTTTCTTTTGGGGTTGTGTAATGCTACTTGATAAAGATGGTCTTTCTTTTTATGACAACGGAACCCACAACTGCTAAACTCAGTTCATGTGCAATAGCTCGCAAACCACACAAAAGATTTAAACTGCACTAGGCAACCTTGTGCGGTGAGCTTGACCTAGAAAGCAAGGGGTTTTGAACTTGAGACCTCCATTATGGGAATCCCAAGCCAAACCATCTAAGTTTTCTTCCAGCTATTGCATTTTCTCAAGCTATACAATTTTGAGGATCTTTATTCTTATGGGTTGTTTTCTTTTTGGGTTTGTGTAATGCTACTTGATAAGTATTGCCTTTTTCTTCCTGCTATTGCATTTTCTCAACCTATACAATTATAAGGTTCTTTATTCTTATGGAGTTAATTTCTTTTTGGGTTGGTGTAATGCTACTCAATAAAGATTGTCTTTTTTCTTCTAATTTCTGCTCTGCTGCTATTAGAGCTGTGTTAAACTTTGTGCTGTATTATACTCTCTAAATCTGAAAGTGTGGCACAGTTTTGGAGTTTGGTAACTCATACGTGTTAGTAAATTTAGATTTGCGGACTAGAACCCCCTTTATAGCTACCACTTACAAGCTTCTTTTAAACAATGTGCGCTGCTTTTTCCTGTTTTATTGATTGGCAGGTGCTGAAAGAAAAAACTGGACTGGAACTTCAGATATTATCTAGGAGGTCGATTATATTTTTTCTGGATTAATCAGAATAGTTTGAGCTTGAGTTTGGGAATATTCTGTTATGGCTACTTGTACGTCAGCTGTATTTATGCCTCCTGATACGCGGCGGTCACGAGGGGTCTTGACTGTTCTTGGTGGTAGAGTTTGCCCCTTGAAAATTCAAGATGAGAAGATTGGATACTTGGGCGTTAACCAAAAGGGTACCTCAAGTTTGCCTCAATTCAAATGTTCAGCCAATTCCCAGAGTGTCAATCAGTATCAAAACAAAGACCCCTTTCTAAATTTACATCCCGAAATTTCTATGCTCAGAGGCGAAGGTAACAATACAATGACTACCTCTAGACAAGAAAGCTCTAGTGGAAATGTCAGTGAGAGTTTGATGGATTCATCA-AGCTCGAACAATTTTAATGAGGCCAAAATCAAGG-TGGTTGGTGTAGGAGGTGGTGGATCAAATGCAGTTAATCGCATGATTGAGAGCTCTATGAAGG</genome_strand>
        <mrna_strand>TTTTTGTCTCTTCAATTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAAAGAAAAAACTGGACTGGAACTTCAGATATTATCTAGGAGGTCGATTATATTTTTTCTGGATTAATCAGAATAGTTTGAGCTTGAGTTTGGGAATATTCTGTTATGGCTACTTGTACGTCAGCTGTATTTATGCCTCCTGATACGCGGCGGTCACGAGGGGTCTTGACTGTTCTTGGTGGTAGAGTTTGCCCCTTGAAAATTCAAGATGAGAAGATTGGATACTTGGGCGTTAACCAAAAGGGTACCTCAAGTTTGCCTCAATTCAAATGTTCAGCCAATTCCCAGAGTGTCAATCAGTATCAAAACAAAGACCCCTTTCTAAATTTACATCCCGAAATTTCTATGCTCAGAGGCGAAGGTAACAATACAATGACTACCTCTAGACAAGAAAGCTCTAGTGGAAATGTCAATGAAAGTTTGATGGATTCATCAGAGCTCGAACAATTTTAATGAGGCCAACATCAAGGTTGGTTGGTGTAAGAAGCGGTGGATCAAATGCAGTTTATCGCATGATTGAAAGCTCTATGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297149" ref_strand="+" ref_description="SGN-E297149 [cLET-29-K5]">
      <seq>gagaatcgattgccaataggccaatagctcacgagaggactaggtgcaggtggtaatccagatatagggatgaatgctgccaaagaaagcaaggaggctatcgaagaagcagttcgcggtgcagatatggtttttgtgactgctggaatgggcggaggaacagggactggtggggctcctataattgcaggaattgccaaatcaatgggtatcttaactgttggtattgtcacaacccccttttcttttgagggacgaagaagagcagttcaagcccaagaaggaattgcagctttgagagaaaatgttgatacactaattgtcattcctaatgacaagttactgactgctgtttccttatcaaccccagtaactgaagcttttaacctggctgatgatattcttcggcaaggggttcgtggtatttctgatataattacgattcctggactggtaaatgttgattttgctgatgtgcgtgctattatggcaaatgctggttcttcgttgatgggaataggaactgctacagggaagaccagagccagagatgctgcattgaatgctgttcaatctcctttgctggacattggcatagagagagctacaggaattgtgtggaatataaccggtggtaacgatttaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="+" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="38826" stop="53376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39126" g_stop="39266" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.851"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39267" i_stop="41750" i_length="2484">
            <donor d_prob="0.994" d_score="0.82"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41751" g_stop="42050" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="441" r_length="300" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42051" i_stop="46868" i_length="4818">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46869" g_stop="46959" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="532" r_length="91" r_score="0.934"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46960" i_stop="52960" i_length="6001">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.959" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52961" g_stop="53076" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="648" r_length="116" r_score="0.862"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="+" ref_id="SGN-E297149" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39126" e_stop="39266"/>
          <exon e_start="41751" e_stop="42050"/>
          <exon e_start="46869" e_stop="46959"/>
          <exon e_start="52961" e_stop="53076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTATAGACTGCCAATAGGTCAAGAACTCACAAGGGGACTTGGTGCAGGCGGTAATCCAGATATAGGGATGAATGCTGCCAATGAGAGCAAGCAGGCCATTGAGGAAGCAGTTTACGGCTCAGACATGGTTTTTGTGACTGTAAGTTCAACCTATGTAATAACTTTAATTGGAAAAAGAAGTTTTGGGTTATTGAAATACACTTTATTCTTTCCTTTGTTTTGTTTCCCCTCTCATTTGTCAGAAACTTAGATTTCATATACTATTGTATAGAAACTTCTAATTCTTTCTTTTATAGTAAAACTAAGTATCTTCTTTTCGTGAGATACTACTTTTCTTAGTTGCTCGGACCCTTCTGTTTCGGTTCCGCACCCGTGTTGACACGACGTGGGTGTGGGATCTGTAGCGGATATGGTCAATTGATTTTGGGTACTTTGACCAAAATCGGAGAAATTTGGGACAGATGCAATGATTTCTATAATCAAACCAAAAGCTAAGGTGAAATGAAGAAAATGAAATACCTTGTATATCAAAATTTCTATGTCAATCTTTTTCGTTATTTCTCCTTTTGGGATTCTCCTCATGATCAATATTTCTCATCTGAAGACTTTGTATATTGACCACATAATATCTCATAATTTAGACTTATTACCCTATTGGACACCCACACTCGAATTTGAACAACTTAGCTTCTTTCTGTCCAATGTGCAGAGCAGCTGAAAGGTTTTTTCTAGTTATAGTACCAGATTGAATTGGTTAAATAAAATGCAGAATTCCTATGTTACATGTAACTTTAGGTAATGAAGTGCAGTTAAAGTATACTCACTTAAACCTGGCAACACTCTTCCTCCCACCCCGTCAAAATTTCTGAGCTCTTTCCCTGGCCCATAAAGATACTTGATACAGTAAAGGATGACTGTTGGAGGAAAGTACACTTAAATATGCTTTTTATAAACAAAGTTCAGTGTCTTTGGTGCTCATTAGAAAGATAGGTGTCACATTAGTCTGCTCCATCCCTTACAGCTTCTCTGATCTACCAACTTGAAATTGCTAATGTGCAACCTGAAGTGTGTCTGACTGCCTATTGCCTTCGTACTGCATAAGCTAAAGAGTTGAGGAGAATTAGTAGAGGAAGGAATCATTTAGTTTTTGATATAATATACGAGTATCTTAATAGCCATTAACGCTACCAAATAAATTTGAAGTATATATTAATGGCTATTAATTGGCATTTTATATGTTTCTATGATTATGATTCTTTCAATAGTTTTCTGAATATTTCTAACTTGTGACTTACATACTTTTTTTTTTAAGTTTCTAAAGATCTAATCATTCACAATTTTTTTTTTGGTAATAATCAATATTTAAATTAACACCGAAAATTATATGTTTTGCCTTTCGTACTTCAAACCGTACCTTCATTTCGGAAAGGAGGGTGAATTTTATATATAGTATTATTTTGTGAGGCAATGAGAAGATATTTCTAGTAACACAAGTTCCCAAATACGTGTGTACTTAGTATTCTCAGTTTAAAAGGGAAGGGTTGATAACAAGCAAAAAGGGGTCATTAGGCGAATCGGGAGCTGGAGAGAATAAATTTTGTTATTCTTAGCTTTTGAAATTGCAATCTGAAAATTGTTTCTGATTTATCTGATAGGACAAAAATAAACGATATTTCACAAGGATCTGGCGTATTGTATCATCCTTGCAAAGAGTTGATAAACTTTCAAAACAAAACATGCTTAATTGAATGAGAGGCTATGTTGGTACAAGCCTACAAGCGTAAACAGATGATAACTAAAATGGTGCTTGTAGCATGGCTATATCTTTGTATCAATCCAATACCAAGATATTTTAAACTTCAAATTATATCCGGAAGTCACAATTAAGTTTCTCTTAATGTGAAGAGACATTTTTTAGCATAATCATAAAAAAAGGATGTACCCAAGAATGTAATTTAAATTTATTCCTTGGCCTTTTGGTTCCAAGACTTTGTCAGATTGCATTAGCCTTATTAATCATCAACATGGTGCTATAAGCATCCAAGAAGGGCATCATATAGTACGCCATAAAAAAGTAAAACGTGTATACCTACCCTTCATCCGAGATGGTATCAGGCCGTTTCTTGGTGTAAGAGAGGAATCTGATCTCCCGTTCTTTTGATTTTCGTGCCATGCTTATCATTCAATCAGTTTTGTAAAAGGCGTGCTTGTTCAAAAACTGAAGCGAGACTCAAAATGTGTTGAGCGCTTTACCTCGTGTAATTTGCCCTTCAGTGTTGTCATCAAGGTTCCAAGGCATACTTTTTCTTGCCAGTGAGCCTCTTCTGAAGAGGCGACGTATGTTTCTCCCTTTGCGCCTTTTATCATTGAAGCCCAAACCTTATTTGTGCTTAAAGCTCCAATGGACCTTAGATCTTTTTTGTGCTTTTTGCTTTTGATATCAATCACTGCATTGAATACTAAGTATATATTTGCTTGAAAGTGCTGTAAAGCTAAATGTGGGATGATTACGTGTTATTATATGTAAATTAAAATTCCTCACATATCTTTAGAGTTTCCGGAGGCTATATTCTCTCACTTTTTGTTTCTTCCTCATATGTGGGCTCCAACATGTTATGTACAGGCTGGAATGGGTGGAGGAACAGGGACTGGTGCGGCTCCTATAATTGCAGGAACTGCCAAATCAATGGGTATCTTAACTGTTGGTATCGTTACAACCCCCTTTTCTTTTGAGGGACGAAGAAGAGCAGTTCAAGCCCAAGAAGGAATTGCAGCTTTGAGAGAAAATGTTGATACTCTGATTGTCATTCCAAATGACAAATTATTGACAGCTGTTTCTCCATCAACCCCAGTAACTGAAGCTTTTAACCTGGCTGATGATATTCTTCGGCAAGGAGTTCGTGGTATTTCTGATATAATTACGGTAAGTTTGTTAGTCACAGTCTTTTCTTTCATTTTCTGTTTTCTGCTTGCATAGTGCCTATGATCCTAAATAAGCATTTGCCTGATAATGCTTTAGGTCTAGGATCTTACTTTTATATGCATCACCAGGATGTGTTTTGTTTGTTCTATGCTTTGAAGGGAAATCTTAAACTATACACAGGTGAAGTATAAATCTCTAGATTTCCTCGCGCCTTAGTGTAAAACAAAGATGTATAACAACAAAAATAGCAACATACCCAGCGTAATACTACAAGTGGGATCTGGGGAGGGTGGTGTGTCCGCAACCTTACCCCTTACCTTGTGAAGATAGAGAGGGTGTTTCCGATAGACCCTCGGCTCATGATAAGGTAAAAATCGTCGTAGTAAATATAATCAATGCAATTGAAAGTTAGAGCTGATCTTACATGTGTTTAAGCAAGATAGGAGAAATAAAAACTAAGAATTGGTTATGCCACAACAAATTGCCAATCTAAGGATTTGTATCGAAATAGATTAGGTGTTAAATGATACCTTATGTATTTCGGATGGAATATATAAAAAAGCATATGCATTTTCTATGGAATAATTTAGTCATAGGTCTAAAGTGTATTAGGGAGCACAATATTAAGTTGTAATGTATGCACTATGTGAATTTAGTGTTATTGGGCATAAAATTGTGATATTGCTTAAAAGGAATCTTGAAAATAACACTGGAAGTGATGAACATGATGTCTAAAAAGGGAAGTAATTAGTTTAACAACTTTAATCAAGCTAATCAAGGTTAAAAAGTAACAATAATGTAACTAATTATAGGTGTAAAATCTTCTTATAAGGTTCTATTGCGCTTGAGTTGTCGAGATTTTTTTCTTGAATCACATTAGGAGAAAATGATGTGAATACAACTTTAAGGAGGTGTCATTCAATGAAGCCTGGCTCACAAATGATGGTTGCCCTCGTCTCTTTTTAGTGTTTTGACATTGATATTAGTAAGTGGAAAGGGCAATTCCTGCATACGACCCACCCATTTGTTAACACTCATTTGGTACGTTATCAATAATGTAAAATGATGGTACATTTTGTGAGAAACAAAAATTTGAGATGGAACCAAATTGATTATTCTGACAAGTTATTGAGGCTTAAATAGCTAAGTTTATATGACCTGTAAAGGAAAGGAAATCAAAACAAATAAATACCTAATTAAAATAGGAGTAAATCAAGCTACCTACTATATTTGCCCATATGCTATAAAATAGTTCTAGGACTCTTAACACCCCTTCAAGCTGATGCATACAAAATTACAAATTAGATGTACCAAGCTTGTTTCATATATAACTCATTTGGGACCGGCTAAGGACTTGGTGAATGTGCCTGCAAGCTGATGATCAGTAGGCCTACAATTTGTCATCCATGTCTCTTCAAGAATATCAAGTGCATATTTCCTATGTGAGATGACAATTCTTGATTTGGATTGAGCAACCTCAATGCCCACGAAGTACCTCAATCGACCAAGATCCTTAGTCTGAAAGTGCTGGAAAAAGTGATGTCTGAATTTGGTAATTCCCTCATCATCATTACCTGTGATAAATGTGCCATAAATGTACACTTTCAAAAACATGCACAAACCTGGAGCAAAGTGACAATAGAACACAAAATGATCAGCTTCACTTCGTACCATGCCAAACTCCTGAATAGCCATGCTAAACTTTTCAAACCATGCCCGAGGAGACTGTTTGAAGCCACAAAGTGCTCGTTGTAGTCTCCATACCATGTTACTAACCTCCCTCAGAGCAACAAAACCAGATGGTTGTTTTATATATACCTCATCTTCGAGATCTCCATGAAAAAAGACATTTTTGATATACAACTGGTAGAGAGGCCAATGACGAACATTAACCATGGATAAAAAGATATGGACTGAAGTAATCTTGGCCACATGAGGGAAGATATCATCATTGTCAAGACCAAAAGTCTGTGTATAAACCTTGACCATTAGTTGAGTTGTCTGTCCATTGGGGCCTACCTTCATTGTATATACCCAACAACAACCAATTGTGGATTTATCTAGAGGTAGAGGAATAAGCTCCCAAGTACCACTAGATTGTAAGGCAGGCATCTCCTCAATCATAGCTTCTTGTTGGTCTGGATGAGAAAGAGCTTCACGTGTAGTCTTAGGAATAGACACAAAGGATGGTGATGATACAAAGGCAATATGGGTTGTTGGCAAACAATGATAGCTCAAACAAGTATAAATAGGATTAGGGTTACGAGTAGAGCAATTACCTTTTCGAGTGTCAGCGGAAGAACTCAGTGTAGACAAGTCCTCAGTAGGCAAGGATTTTGATGAAGGGTTTGAATCATTTGGGCGCGGACGACGATGATAGGTCAATAGTGGTGGAGGTGTAGAGGAGGAAGATGGAGTTATAGAAGATGAGGCGGAAGGGGAGACTATGGTGGGATCTCCAAAAGATGGAATTGGTAGAACCTCATTAATGCCTAATTTTTCAACAGAGGATGTAAAGTAGGGCTTACCTTCAAAAAAAGTAACATCAACGGACATAAGGTATCGCTGGAGGTGAGGTGAGAAACATCGGTATCCCTTCTCTACTTCTGAAAAACCAAGAAAGACACATTTAAGAGCACAAGGAGCTAATTTTTCTTTTTCTGGAGTGAGTGTATGGACAAAGCATGTGCTCCCAAAGACACGTGGTGGAAGAGAAAATAAGGTTGACTGGGGAAATAAAATAGAGTGTGGAACCTGATTTTGAATAGCAAAGGAAGGCATACGGTTAATCAGATAACAAGAGGTGAGCACTACATCCCCCCAAGATCCAATGGAACACTTGCTTGTATGAGAAGAGTGCGTGCAGTCTTAACAATATGACTATTTTTTCTCTTTGCAACCCTATTTTGTTGTGTAGTATAAGGACAAAATGTTTGATGAAGTATTCCACTGGACGACAGAAATTGTTTAAATTGAGATGATAAATATTCACGCGCATTATCACTACGAAAAGTGCGAATAGAAACACCAAATTGAGTTCTTACTTCAGCACAAAAAGTTTGAAATATGAAAGCTAATTCAGAAAGATCTTTCATTAAGAACACCCAAGTGTACCTTGAGTAATCATCAACGAAATGCTTAAAATTCAATGTAGAACTAATTCTACTAGGACCCCAAATATCATAATGAACTAAATGAAAAGGAGACTCCGCATAATTATTAGGACTACGTGAAAAAAAAAATTGGGTGTGCTTCCCTAGTTGACAGGACTCACAATCTAACTTAGACAATTTAGACAAGTTAGGTATCATCTTTTGAAGTTTGGATAAACTAGGGTGTCCCAATCGTCTGTGGATTAAATCTGGAGAGTCAGATATTGAACAAACTGTAGTGGATTCATGAGGATTAAGATAATAAAGTCCATTTGACTCATGCCCTTCTCCAATTATCCTTCCTGTACAGAGGTCTTGTATAACAAAGAAGTCACTAAAGAATGAGACGAAACAATTTAAAGTCTGAGCCAAACGACTTATTGACATGAGGCTAAAGAGACAACCAGGGACAAGAAGAACATTATTCAGAGTCAAGGAAGGTAAGGGATTGGCTTGACCGATTCCGGTTGCCTTGGTTTGAGAACCATTAGCTATCCTAATTGTGGGAAGGGACTGAGAGTAAATAATATCAGACAATACAAATTTGTCACCAGTAACGTGGGTAGCAGCGCCTGAGTCCATGACCCAACAACCATGTGTGGTGGATTGTGAGATACTAGTGGCAGGATTAACAGGATTACCATTTTTGGCAGCTATTGATGAAGATGTCTGCTTACTCGCCTGGTACTGAAGAAAGTCATTGTATTCTATCTCAGACAAAGAGACCAGTCGATTGGTTGGATTACCAGTGGATTCAGTTTGAGGGTTGCTGGAGCCCATTAATTTAGTGCCAAACATGTTGAATCCAAGAGAAATGAAAACAGATCTATCAGTGTCCAAAAAAAAACGTGAATTTCGGAAAAGCACCTGAAATATAGATTGGAAAAACTGCTTGTTGTCTCGCTGGAAAATTAGATCTGACCGCTGGAAAGTGATTGAAATTAGTAAAGAAATTAAATGGGTAGGGTCGGAATGTTGCAACGAATCTACTGAAAAAGGAATCTGCTGGAGAAGTGGTCGGAAAACATCAAGCGAGGATTCTGATTGTAACGGTGGTACTGATATATGCAAAGTACCCCTGGAGAATGTCGAAATTGTGGACTATGGAGGTTTTGCTGGAAAAACGCTCAACAATTTTGTTCCCTTACTTTATTCATGTTTTCTCACTAAAGAAAACTTTAATAAAGAATAAGAGTTTGAGAGAGAATTCACCTTGATTATTCCCACTAGCTATTGGGAATCAAGCTACCTACTATATACACACACACACACACACACACACACACACACTATAGAATATTCCATGATTTTAACACACTTTATCAAAAAATAAAAGAAGTAAAATGATGGCTCATTTATCACCACAAGCTTTTGATACTTACCATAGGATCCTCTTACTACTTCCAAGGCAAATGAGGCTCATTAAGTACTCATATCACTCCCCTTAGTAGGATAACTCCATGTACTCTTCATGCGTTCATCTTTACTTAAATGCATCTGAACTTATGGACCTAAATGTAGCAAATACATGTCAATTTTCTATATTTGGCATATTCTTTCCTTCTACATAAAATGGATTTTCTTTCCAAAGTGCATTCTTCTGCTAATTTGGTGAATATCAAGGCTTGTATTTATTTATCCATGATATATCTGGCATGATTTACAGATTCCTGGGCTAGTAAATGTGGATTTTGCTGATGTGCGTGCTATTATGGCAAATGCTGGGTCTTCTTTAATGGGAATAGGAACTGCTACAGGTAAGCTCAAAAAGCCATTTGATAGTTGTTGGCACTAAGCCATTTCTCTTTGTTGGTTGCCTTTTAACTCATAATGTCATGTGATTTTAAAGTCTATGTGATGTGATGATGTGGCTTAATGAGACACACATACAGCCAACATGGCTAAATCATTATTTATGTGAACTTCACAATACATTGAATCAAAAAAATCTATGTATTGTTATTACTGATATAAAGGGCGTATGCAGCCTCACCCAAGGGTGTGCCCTAGAGGTCTCAGGTTCAATTCTCAGTGGAGCCAAATACATTAGGTTATATCTTTCCATCTGGACAAGCCGTGGTGGGAGTTCCCCTTTATATGTTCTGGTGGGAATTAGTAGGTACCCCGTGAAATTAGTTGAGATGTGCGCAACCTGGTGTGGACACTATGGTTATCACAAAAAATGAACATATGCAGCTGTCAGAATTTATCCATGGTGTCCAAATTTATGTGCTACTTATAAAAGTTATCCACTAAACTTAAATATTGTATTCTGTTGAAGTCTTGTGTAAAATATTAGTCACGCCTGTGCCTATCAGTACGTATTTTGCACCAGTTCCATTTTTCTTGTGCAAACGTCAAGTCCTTGACATATTTTAAGGTTTATAAGAACTGTAACAATCTAAACTGAAATAACAAATAAGCTCAAGGCTAATTTCCTGAGAAGTATTTGAGGTCGCGTATGCAGCCTTACCCAAGGGTGTGGCCTAGAGGTCTCAGGTTCAATTCTCAGTGGAGCCAAAAACATTAGGTTATTTCTTCCCATCTGTACAAGCTTGGTGGATAGAGTTCCCCAGTACTTGTGCTGGTGGGAATTAGTAGGTACCCTGTGGAATTAGTTGAGATGCGCGCAAACTGGTGGGGACACTCGGAGTTCTTTTTTCGTCTGTATAGAGCTTAGTGAAATGTGTAAGTTGAGGTGCAATGAAGGTCATGTTCAGTAGACAAAATGTTTTGCATTTCAACGAATTTCATTTATTAACGAAGAGAACTGGCTGCTGCAGATAACCGGAACAATTTTGTGTGATATTTCAGAATTTTCATGTAAGAAACGAAATATGTATCTGTTTCAATCAGTCGTGAGTGCACACAGAGAACATAAGAGAGCAAAGGAGGGGGTAGGATTCTTAAAGTCTCAATTAGTTTCTCGTATCAGTCCCTATAAATAAATGTGAGATTACCATAGGCCATAGGGATAGAGCAAATTATTTTTTCTGATGCTGCAGCAGATGGCGGAGCAGCCATCTGAAGATGGTTCCGGCAGCCGATGCGCCGTTTGCACCGCCACTCGCCCTTTCATCCTCCACTTTCTCCCCTTCAGAGGTCGCAACCGCCATCTTTGCACCGCCTGCATACTGGACTCCTACCCTGTCGGCTGTTCCTTCTGTCCCATCTGCTTTGATGTCTTCCTCCACAGCCCTCCTCCCCCTCACCTCCATCTCCGATGCTCAAAATGCATCTCTATCTCACACCTCTCTTGTATCTCTGATGCTGCTTCCTTCTCCCCTAGTTACTTGTGCCCTCCTTTTTCTAACCCTAATTTTCTTTCTTCCATATCACTCCGGATCCTGCTAATAATGCCATAGAATCAATCTCCATTTGGCTAACAGATTGTTGCCGCTGCTACCATTGCTTCTGAGTCTATCCACAATGTTGCTGATATGGCCTGGATTAACGCCGACATTAGGGTCCAAGAAGCTCTGTCAGCTAAGGCCGAAGCTGCCCAAGTTTTGGTTAAGCTAAAGAATTTGTTGGGCAACCAAGATCATTAGTTCGGTTCCAATTTCTCGTCCACACTTGTTTCTAATACTCCAGGTAACGACACAGGGGGGAAAAGATAAATTGAAGCAAAAGGATGATCCTCTCAATAGATGCAAATGATTGTGATACCCTTGATGATTAGATTAAGTAGTTTCAATTCTAAAACAATGCTTTATAAGATTTTTCTTTTTTTGTTGTGTGGCTACTGGCATCTAGCAACTTCTCTCTATTTTTGAATGCTCGGCTATTTCAGGGGATGCTTTTTGGCGAACAAAGGAATTGGAATTATTCATTCAACTATATCTCGCTTACTGTTAATGCCTCTCTTTCAATATCGAGTTTTATATAATCTTTGATTTTAATATGGTATGCTCAATTATATCTTTTTTGTTGTTGGAGTTCTCTTTGACACATCTTGGGCTTACTATCCAAGGTAGTGGAGAGTCTGACGATGATGTCACACATCATATTCGTGTTGGGTGGATGAAATGGGGGCTCACATTTGTAGTCTTGTGTTATAAGAAGGTGTCACCAAAACATAAATGCAAGTTCTATAGAGTGGTGTTAGACCAACTATGTTGTATGGAGCGGAGTATTGGTCAGTCAAGAACCCTCACGTCTAGAAGATGAAAGTTGCGAAAATGAGGATACTGAGATGGATGTGTGGGCTTACTAGGAGAGATATGAATAGAAATGGAGATATCTGGGTCAAGGTGGGAGTGGGCTCGATGGAGGACAAACTGCGGAAATAGAGACTGAGATGGTTTAGGATGTAAAGAGGAAATGTTGGATTCCCCAATACAGAGGTGTGAGAGGTTTGCTATGGATGGTTTCAAGAGAGGTAGAGGTAGGCTGAAGAAGAAGTACTCGTGAGAAGTGACGTGACGTGTCTCAGCGTTAAATTACCGAGGACATGACTTTAGATAAGACTTGGGAGACTATGAAGTACATATACCCTTCCAGACTAGTAGTTGTAGCATTCCTCTTGCAGTTTCTTGTTCTTCATTTTCTATTACTATCGGTTATTTCTTGTTCAATTATAGTATTATTTTGTCATGATACTGCTCCGTTTTTTTTTTGAGAACACTTGTCATACTATCTTTAGTATTTTGTCGTGGTTTCTTCACTTCTAGTACTTCTTTTACCAGACTACTTTGTTTCTTGAGCCGACGGTCTATTGAAAACAACCTCTCTACCTCCCAAGGTAGGGGTAAGGTTTGCGTACACATTATCCTCCCCAGACCTCACTGGTTGGATTACAGTGGCTATGCTATTGTCTTTTAGTAATGAAGAACTCTTCTATTTTAGTTTCTAACTTGGTGGGTAATGGACCCACTCATTTATAGTTCGTTTCTACTTTTTTTTTGTAGAAATTGGATTTATTGTTGATAAATGTTGTGCAAACTATACTCTCAAAGAAAAAGAAATGAAATTGTATTGTGATATTTAACTTCTGAATCATGCATGCTAATTTTTTATTACCGTGATGTCCTGGTCAACTTGCGTGCACCTCGATTATTTCCACAGGTACCTACTATGTCCCACCAACATAGGTACTGCTAAAAGAGGTAATATAGAGTACATTAGGGAGTTCACGTAGGTTTTATAGAACCAATACAAACTTATGCATGGTAGATCTACTATAGATGCGATATGTTATTTTTATTAAGAAGATTAATGGATTTTTTTTGGGGAGGATGAATGATCTCCACATTGCTTGACCTAGAAAAACCTTTTGTTGGAGAATTTGGGAAGGTAGGTCTTATATCAAATAAAATAAATAAATGCCACAAGTGTCACTTTAGAAAAAGTTATCAAAAGTGTGAAAATAGTGAACGAGGTGCAAAGTATTTTTGCCAAAACTAAAGGTTTATACTAGTGCTGGCAGAATTTACCCACTTTTTGATAACCCTCCCATATTTAAGCGGATTTGGGTGAGTGATGAACCCATTTTCAAACTGTAAAAAAGTTGGTCGGTCATGGGTCAAGTATGGGTTGCCTTCAATCAGCTATCGTGCATCACTCACAATTTCTTCAAATTGTTTTTGCTTCAGCAACAACTTTCTAGCATCTACTATTCAAATACTTTTTGCTTTTTAGACTTACAGTAAAGACTTCAGTAGATATGATTTCCTTGCCACTGTTAACAATATATGCTCTTATTTTTATATATAAAAATTATCCCAAACTAGCTATGTGTTGTTGTATAATTAAATGAATACAATAGTTAACTAGATATGTAAGAACAACAAATAAATACACATCCACTAACTTACGCTAACACACACACACACACAAAATTACCAGAATCATCAAGTTACGGTATTACTAGATTTTAAAAGAAACACAAAGTCAGTTATATAAGATGGGTACTTATTTTATCAACAAGACGAACAATTTACTCAAAAACTATTTTTATTTATTTTAAATGTCTACGATGAAAACACATTTTATACGAGCTCTTTTATATGGAAAATATGGTTATGTGACTGATCATATTGTCTTGAGTTCTTGAATTATTCCCAAGTAGATTAAAAAATATAATATTGTGATATAACAAAAGTGAATATCTAGTTTCACCGATACACTGTTACAAATTATTAAACATAACTGAAGATATTATTTGTTCCAAAACCACATACTATGTAATGTGGGTAAACCCATTTTCAACCCGCCCATTAATGACCCAATCCATTTTTTACCCGCATGATTGGGTATTGACCCATGTTTGCTCAACCCGTTTCCAACCCGCCCATTTGCCACCAACAGTTTATACCAAGAATCTTCCTTGAGTTCACTTTTATCCTTATGGTTGAGCTAACCAAATGAAGGGAGAGTGAAATCAACGAGGATCGTGGTGCCCACGTGCAGACAATTCAGATCTTTTGGTTCAGCGTGCTTCTGCTAAAAGAAACATTTTCCAACTGAAACACCACCATAAAGGTAGAGAAGCATGGGGTGGGGGGAGACTTTGGGCCTTCATGGAGGGAGAAAAGGGTTCCATATTCGTGGCTCGAGGTTGTGAGGGAGTTATAGCCTTTGATTCCAATATGCTATGAAGAGAAATCTAAAGAAAAATGGCAGCCCAGTGCACTAAGCTCCCGCCATGCACAAATCCGATGAAGGGCCGGACTACTAGGTGGGTTTATTATATGCAACCTTACATTGCATTTCTGAAAGAGGCAGTTTCCGCAGATCGTACCCGTGACATGATCCCCTTTAACCTAAGCAGACATCTGCATTGACATAAATAGCTGCTTGTAGAAATTTCGAATAGTGACCTAAAAAATTGAATGTAATCTAAAAAGTAACATCTTTATCTGCTGATGTTCCCGTTAGGGAAATTGGAAAATAAACTCTTTGGACTGGACACATCTGACATGTTTCTGTGAGTTTCCTCCTATTATTGGATGCTATTTGGCTGCAGATTTAAGATTTCTTTCAATTCAGTCACTTGCTGACAATAGTGATTGATGGTCCATTTCCTGCTGGACCCCTTCTTACTTCTGGCTTTATTCTTGCGAAAGGTAGAAACTGTGTGCATTTTTCTACGTTGTTTTGGCTATTTGATAATATTTCATGTCCAATGTACAACAACAACAACATCATATCCAGTGTAGTCCCACAAAGTGAGGTCTGAGGGAGGGTAGAGTGTATGCAGACCTTACCCCTACCTTCAGAGGTAGAGAGGTTGTCTTCAATTGACCCTTAGCTCAAGGAAAACAGTCCCCAAAAAAAGAAGTAATAGAAGTACAGAAAAGAACAAATAATAACAAAACTGCAACAAAACCATACGATAGTCGAGGTATTAAGGAATCAGCAGCTATTAACATCAATCAATGGACAAGAAACTATAGGAGAAAAACTACGACTACTAATATGAACGGATAGCAAGACAATGCACTACTACCTACTATCCTAATTCATGACCTCCACTCCCTCCCATCTAAGGTCATGCCCTCGGTAAGCTGAAACTGTGTTATGTCATGTCCAATGTAAAACACCTAAATCTCATCTGTAATATAGCAGGTTCGCATGCAAAATATGCATATCAAGATTTCAGATATGTATATCGTCCATGTATGGTTTTGTGCATCTCTCTAATAGTCGGATTTAGCATTGCTAACAAGTTTTTTTTTTTTGCAAGAATGGAGTGATATGTTGATGCTTCTACTAACTAGTCAAGAGGAAAATTGATATTATTCGTTGATATTACAGGAAAGACCAGAGCGAGAGATGCAGCATTGAACGCCATTCAATCTCCTCTGCTGGATATCGGTATAGAGAGGGCTACTGGAATTGTGTGGAATATAACTGGTGGTAGTGATCTAACA</genome_strand>
        <mrna_strand>GAGAATCGATTGCCAATAGGCCAATAGCTCACGAGAGGACTAGGTGCAGGTGGTAATCCAGATATAGGGATGAATGCTGCCAAAGAAAGCAAGGAGGCTATCGAAGAAGCAGTTCGCGGTGCAGATATGGTTTTTGTGACT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGAATGGGCGGAGGAACAGGGACTGGTGGGGCTCCTATAATTGCAGGAATTGCCAAATCAATGGGTATCTTAACTGTTGGTATTGTCACAACCCCCTTTTCTTTTGAGGGACGAAGAAGAGCAGTTCAAGCCCAAGAAGGAATTGCAGCTTTGAGAGAAAATGTTGATACACTAATTGTCATTCCTAATGACAAGTTACTGACTGCTGTTTCCTTATCAACCCCAGTAACTGAAGCTTTTAACCTGGCTGATGATATTCTTCGGCAAGGGGTTCGTGGTATTTCTGATATAATTACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707690" ref_strand="+" ref_description="SGN-E707690 [FA33CH03]">
      <seq>cgtttacggctcagacatggtttttgtgactgctggaatgggtggaggaacagggactggtgcggctcctataattgcaggaactgccaaatcaatgggtatcttaactgttggtatcgttacaacccccttttcttttgagggacgaagaagagcagttcaagcccaagaaggaattgcagctttgagagaaaatgttgatactctgattgtcattccaaatgacaaattattgacagctgtttctccatcaaccccagtaactgaagcttttaacctggctgatgatattcttcggcaaggagttcgtggtatttctgatataattacgattcctgggctagtaaatgtggattttgctgatgtgcgtgctattatggcaaatgctgggtcttctttaatgggaataggaactgctacaggaaagaccagagcgagagatgcagcattgaacgccattcaatctcctctgctggatatcggtatagagagggctactggaattgtgtggaatataactggtggtagtgatctaacattatttgaggtaaatgctgcagcagaggttatatatgaccttgtggatccaagtgctaacctcatttttggggcggtgatagacccatcaataagtggacaggtcagcataacgctgattgccactggtttcaagcgccaagaagaaagtgatatgaggcccctccagggaaaccaactagcacagggagatgcttcacttggaactaacagacgacctgcgtcctttctggaaggtggttcagtggaaattcctgagttcctcangaaaaaagggcgattgcgctatccaagagcttaagatcttggttatgcatcgactatcaagtttatctcatggaaaaaccattgtcatctcgtttttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="+" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="38937" stop="56243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39236" g_stop="39266" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39267" i_stop="41750" i_length="2484">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41751" g_stop="42050" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="331" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42051" i_stop="46868" i_length="4818">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46869" g_stop="46959" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="422" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46960" i_stop="52960" i_length="6001">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52961" g_stop="53085" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="547" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53086" i_stop="54808" i_length="1723">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54809" g_stop="54901" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="640" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="54902" i_stop="55474" i_length="573">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="55475" g_stop="55540" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="706" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="55541" i_stop="55644" i_length="104">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="55645" g_stop="55776" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="707" r_stop="838" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="55777" i_stop="55876" i_length="100">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="55877" g_stop="55943" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="839" r_stop="904" r_length="66" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="+" ref_id="SGN-E707690" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>905</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39236" e_stop="39266"/>
          <exon e_start="41751" e_stop="42050"/>
          <exon e_start="46869" e_stop="46959"/>
          <exon e_start="52961" e_stop="53085"/>
          <exon e_start="54809" e_stop="54901"/>
          <exon e_start="55475" e_stop="55540"/>
          <exon e_start="55645" e_stop="55776"/>
          <exon e_start="55877" e_stop="55943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTACGGCTCAGACATGGTTTTTGTGACTGTAAGTTCAACCTATGTAATAACTTTAATTGGAAAAAGAAGTTTTGGGTTATTGAAATACACTTTATTCTTTCCTTTGTTTTGTTTCCCCTCTCATTTGTCAGAAACTTAGATTTCATATACTATTGTATAGAAACTTCTAATTCTTTCTTTTATAGTAAAACTAAGTATCTTCTTTTCGTGAGATACTACTTTTCTTAGTTGCTCGGACCCTTCTGTTTCGGTTCCGCACCCGTGTTGACACGACGTGGGTGTGGGATCTGTAGCGGATATGGTCAATTGATTTTGGGTACTTTGACCAAAATCGGAGAAATTTGGGACAGATGCAATGATTTCTATAATCAAACCAAAAGCTAAGGTGAAATGAAGAAAATGAAATACCTTGTATATCAAAATTTCTATGTCAATCTTTTTCGTTATTTCTCCTTTTGGGATTCTCCTCATGATCAATATTTCTCATCTGAAGACTTTGTATATTGACCACATAATATCTCATAATTTAGACTTATTACCCTATTGGACACCCACACTCGAATTTGAACAACTTAGCTTCTTTCTGTCCAATGTGCAGAGCAGCTGAAAGGTTTTTTCTAGTTATAGTACCAGATTGAATTGGTTAAATAAAATGCAGAATTCCTATGTTACATGTAACTTTAGGTAATGAAGTGCAGTTAAAGTATACTCACTTAAACCTGGCAACACTCTTCCTCCCACCCCGTCAAAATTTCTGAGCTCTTTCCCTGGCCCATAAAGATACTTGATACAGTAAAGGATGACTGTTGGAGGAAAGTACACTTAAATATGCTTTTTATAAACAAAGTTCAGTGTCTTTGGTGCTCATTAGAAAGATAGGTGTCACATTAGTCTGCTCCATCCCTTACAGCTTCTCTGATCTACCAACTTGAAATTGCTAATGTGCAACCTGAAGTGTGTCTGACTGCCTATTGCCTTCGTACTGCATAAGCTAAAGAGTTGAGGAGAATTAGTAGAGGAAGGAATCATTTAGTTTTTGATATAATATACGAGTATCTTAATAGCCATTAACGCTACCAAATAAATTTGAAGTATATATTAATGGCTATTAATTGGCATTTTATATGTTTCTATGATTATGATTCTTTCAATAGTTTTCTGAATATTTCTAACTTGTGACTTACATACTTTTTTTTTTAAGTTTCTAAAGATCTAATCATTCACAATTTTTTTTTTGGTAATAATCAATATTTAAATTAACACCGAAAATTATATGTTTTGCCTTTCGTACTTCAAACCGTACCTTCATTTCGGAAAGGAGGGTGAATTTTATATATAGTATTATTTTGTGAGGCAATGAGAAGATATTTCTAGTAACACAAGTTCCCAAATACGTGTGTACTTAGTATTCTCAGTTTAAAAGGGAAGGGTTGATAACAAGCAAAAAGGGGTCATTAGGCGAATCGGGAGCTGGAGAGAATAAATTTTGTTATTCTTAGCTTTTGAAATTGCAATCTGAAAATTGTTTCTGATTTATCTGATAGGACAAAAATAAACGATATTTCACAAGGATCTGGCGTATTGTATCATCCTTGCAAAGAGTTGATAAACTTTCAAAACAAAACATGCTTAATTGAATGAGAGGCTATGTTGGTACAAGCCTACAAGCGTAAACAGATGATAACTAAAATGGTGCTTGTAGCATGGCTATATCTTTGTATCAATCCAATACCAAGATATTTTAAACTTCAAATTATATCCGGAAGTCACAATTAAGTTTCTCTTAATGTGAAGAGACATTTTTTAGCATAATCATAAAAAAAGGATGTACCCAAGAATGTAATTTAAATTTATTCCTTGGCCTTTTGGTTCCAAGACTTTGTCAGATTGCATTAGCCTTATTAATCATCAACATGGTGCTATAAGCATCCAAGAAGGGCATCATATAGTACGCCATAAAAAAGTAAAACGTGTATACCTACCCTTCATCCGAGATGGTATCAGGCCGTTTCTTGGTGTAAGAGAGGAATCTGATCTCCCGTTCTTTTGATTTTCGTGCCATGCTTATCATTCAATCAGTTTTGTAAAAGGCGTGCTTGTTCAAAAACTGAAGCGAGACTCAAAATGTGTTGAGCGCTTTACCTCGTGTAATTTGCCCTTCAGTGTTGTCATCAAGGTTCCAAGGCATACTTTTTCTTGCCAGTGAGCCTCTTCTGAAGAGGCGACGTATGTTTCTCCCTTTGCGCCTTTTATCATTGAAGCCCAAACCTTATTTGTGCTTAAAGCTCCAATGGACCTTAGATCTTTTTTGTGCTTTTTGCTTTTGATATCAATCACTGCATTGAATACTAAGTATATATTTGCTTGAAAGTGCTGTAAAGCTAAATGTGGGATGATTACGTGTTATTATATGTAAATTAAAATTCCTCACATATCTTTAGAGTTTCCGGAGGCTATATTCTCTCACTTTTTGTTTCTTCCTCATATGTGGGCTCCAACATGTTATGTACAGGCTGGAATGGGTGGAGGAACAGGGACTGGTGCGGCTCCTATAATTGCAGGAACTGCCAAATCAATGGGTATCTTAACTGTTGGTATCGTTACAACCCCCTTTTCTTTTGAGGGACGAAGAAGAGCAGTTCAAGCCCAAGAAGGAATTGCAGCTTTGAGAGAAAATGTTGATACTCTGATTGTCATTCCAAATGACAAATTATTGACAGCTGTTTCTCCATCAACCCCAGTAACTGAAGCTTTTAACCTGGCTGATGATATTCTTCGGCAAGGAGTTCGTGGTATTTCTGATATAATTACGGTAAGTTTGTTAGTCACAGTCTTTTCTTTCATTTTCTGTTTTCTGCTTGCATAGTGCCTATGATCCTAAATAAGCATTTGCCTGATAATGCTTTAGGTCTAGGATCTTACTTTTATATGCATCACCAGGATGTGTTTTGTTTGTTCTATGCTTTGAAGGGAAATCTTAAACTATACACAGGTGAAGTATAAATCTCTAGATTTCCTCGCGCCTTAGTGTAAAACAAAGATGTATAACAACAAAAATAGCAACATACCCAGCGTAATACTACAAGTGGGATCTGGGGAGGGTGGTGTGTCCGCAACCTTACCCCTTACCTTGTGAAGATAGAGAGGGTGTTTCCGATAGACCCTCGGCTCATGATAAGGTAAAAATCGTCGTAGTAAATATAATCAATGCAATTGAAAGTTAGAGCTGATCTTACATGTGTTTAAGCAAGATAGGAGAAATAAAAACTAAGAATTGGTTATGCCACAACAAATTGCCAATCTAAGGATTTGTATCGAAATAGATTAGGTGTTAAATGATACCTTATGTATTTCGGATGGAATATATAAAAAAGCATATGCATTTTCTATGGAATAATTTAGTCATAGGTCTAAAGTGTATTAGGGAGCACAATATTAAGTTGTAATGTATGCACTATGTGAATTTAGTGTTATTGGGCATAAAATTGTGATATTGCTTAAAAGGAATCTTGAAAATAACACTGGAAGTGATGAACATGATGTCTAAAAAGGGAAGTAATTAGTTTAACAACTTTAATCAAGCTAATCAAGGTTAAAAAGTAACAATAATGTAACTAATTATAGGTGTAAAATCTTCTTATAAGGTTCTATTGCGCTTGAGTTGTCGAGATTTTTTTCTTGAATCACATTAGGAGAAAATGATGTGAATACAACTTTAAGGAGGTGTCATTCAATGAAGCCTGGCTCACAAATGATGGTTGCCCTCGTCTCTTTTTAGTGTTTTGACATTGATATTAGTAAGTGGAAAGGGCAATTCCTGCATACGACCCACCCATTTGTTAACACTCATTTGGTACGTTATCAATAATGTAAAATGATGGTACATTTTGTGAGAAACAAAAATTTGAGATGGAACCAAATTGATTATTCTGACAAGTTATTGAGGCTTAAATAGCTAAGTTTATATGACCTGTAAAGGAAAGGAAATCAAAACAAATAAATACCTAATTAAAATAGGAGTAAATCAAGCTACCTACTATATTTGCCCATATGCTATAAAATAGTTCTAGGACTCTTAACACCCCTTCAAGCTGATGCATACAAAATTACAAATTAGATGTACCAAGCTTGTTTCATATATAACTCATTTGGGACCGGCTAAGGACTTGGTGAATGTGCCTGCAAGCTGATGATCAGTAGGCCTACAATTTGTCATCCATGTCTCTTCAAGAATATCAAGTGCATATTTCCTATGTGAGATGACAATTCTTGATTTGGATTGAGCAACCTCAATGCCCACGAAGTACCTCAATCGACCAAGATCCTTAGTCTGAAAGTGCTGGAAAAAGTGATGTCTGAATTTGGTAATTCCCTCATCATCATTACCTGTGATAAATGTGCCATAAATGTACACTTTCAAAAACATGCACAAACCTGGAGCAAAGTGACAATAGAACACAAAATGATCAGCTTCACTTCGTACCATGCCAAACTCCTGAATAGCCATGCTAAACTTTTCAAACCATGCCCGAGGAGACTGTTTGAAGCCACAAAGTGCTCGTTGTAGTCTCCATACCATGTTACTAACCTCCCTCAGAGCAACAAAACCAGATGGTTGTTTTATATATACCTCATCTTCGAGATCTCCATGAAAAAAGACATTTTTGATATACAACTGGTAGAGAGGCCAATGACGAACATTAACCATGGATAAAAAGATATGGACTGAAGTAATCTTGGCCACATGAGGGAAGATATCATCATTGTCAAGACCAAAAGTCTGTGTATAAACCTTGACCATTAGTTGAGTTGTCTGTCCATTGGGGCCTACCTTCATTGTATATACCCAACAACAACCAATTGTGGATTTATCTAGAGGTAGAGGAATAAGCTCCCAAGTACCACTAGATTGTAAGGCAGGCATCTCCTCAATCATAGCTTCTTGTTGGTCTGGATGAGAAAGAGCTTCACGTGTAGTCTTAGGAATAGACACAAAGGATGGTGATGATACAAAGGCAATATGGGTTGTTGGCAAACAATGATAGCTCAAACAAGTATAAATAGGATTAGGGTTACGAGTAGAGCAATTACCTTTTCGAGTGTCAGCGGAAGAACTCAGTGTAGACAAGTCCTCAGTAGGCAAGGATTTTGATGAAGGGTTTGAATCATTTGGGCGCGGACGACGATGATAGGTCAATAGTGGTGGAGGTGTAGAGGAGGAAGATGGAGTTATAGAAGATGAGGCGGAAGGGGAGACTATGGTGGGATCTCCAAAAGATGGAATTGGTAGAACCTCATTAATGCCTAATTTTTCAACAGAGGATGTAAAGTAGGGCTTACCTTCAAAAAAAGTAACATCAACGGACATAAGGTATCGCTGGAGGTGAGGTGAGAAACATCGGTATCCCTTCTCTACTTCTGAAAAACCAAGAAAGACACATTTAAGAGCACAAGGAGCTAATTTTTCTTTTTCTGGAGTGAGTGTATGGACAAAGCATGTGCTCCCAAAGACACGTGGTGGAAGAGAAAATAAGGTTGACTGGGGAAATAAAATAGAGTGTGGAACCTGATTTTGAATAGCAAAGGAAGGCATACGGTTAATCAGATAACAAGAGGTGAGCACTACATCCCCCCAAGATCCAATGGAACACTTGCTTGTATGAGAAGAGTGCGTGCAGTCTTAACAATATGACTATTTTTTCTCTTTGCAACCCTATTTTGTTGTGTAGTATAAGGACAAAATGTTTGATGAAGTATTCCACTGGACGACAGAAATTGTTTAAATTGAGATGATAAATATTCACGCGCATTATCACTACGAAAAGTGCGAATAGAAACACCAAATTGAGTTCTTACTTCAGCACAAAAAGTTTGAAATATGAAAGCTAATTCAGAAAGATCTTTCATTAAGAACACCCAAGTGTACCTTGAGTAATCATCAACGAAATGCTTAAAATTCAATGTAGAACTAATTCTACTAGGACCCCAAATATCATAATGAACTAAATGAAAAGGAGACTCCGCATAATTATTAGGACTACGTGAAAAAAAAAATTGGGTGTGCTTCCCTAGTTGACAGGACTCACAATCTAACTTAGACAATTTAGACAAGTTAGGTATCATCTTTTGAAGTTTGGATAAACTAGGGTGTCCCAATCGTCTGTGGATTAAATCTGGAGAGTCAGATATTGAACAAACTGTAGTGGATTCATGAGGATTAAGATAATAAAGTCCATTTGACTCATGCCCTTCTCCAATTATCCTTCCTGTACAGAGGTCTTGTATAACAAAGAAGTCACTAAAGAATGAGACGAAACAATTTAAAGTCTGAGCCAAACGACTTATTGACATGAGGCTAAAGAGACAACCAGGGACAAGAAGAACATTATTCAGAGTCAAGGAAGGTAAGGGATTGGCTTGACCGATTCCGGTTGCCTTGGTTTGAGAACCATTAGCTATCCTAATTGTGGGAAGGGACTGAGAGTAAATAATATCAGACAATACAAATTTGTCACCAGTAACGTGGGTAGCAGCGCCTGAGTCCATGACCCAACAACCATGTGTGGTGGATTGTGAGATACTAGTGGCAGGATTAACAGGATTACCATTTTTGGCAGCTATTGATGAAGATGTCTGCTTACTCGCCTGGTACTGAAGAAAGTCATTGTATTCTATCTCAGACAAAGAGACCAGTCGATTGGTTGGATTACCAGTGGATTCAGTTTGAGGGTTGCTGGAGCCCATTAATTTAGTGCCAAACATGTTGAATCCAAGAGAAATGAAAACAGATCTATCAGTGTCCAAAAAAAAACGTGAATTTCGGAAAAGCACCTGAAATATAGATTGGAAAAACTGCTTGTTGTCTCGCTGGAAAATTAGATCTGACCGCTGGAAAGTGATTGAAATTAGTAAAGAAATTAAATGGGTAGGGTCGGAATGTTGCAACGAATCTACTGAAAAAGGAATCTGCTGGAGAAGTGGTCGGAAAACATCAAGCGAGGATTCTGATTGTAACGGTGGTACTGATATATGCAAAGTACCCCTGGAGAATGTCGAAATTGTGGACTATGGAGGTTTTGCTGGAAAAACGCTCAACAATTTTGTTCCCTTACTTTATTCATGTTTTCTCACTAAAGAAAACTTTAATAAAGAATAAGAGTTTGAGAGAGAATTCACCTTGATTATTCCCACTAGCTATTGGGAATCAAGCTACCTACTATATACACACACACACACACACACACACACACACACTATAGAATATTCCATGATTTTAACACACTTTATCAAAAAATAAAAGAAGTAAAATGATGGCTCATTTATCACCACAAGCTTTTGATACTTACCATAGGATCCTCTTACTACTTCCAAGGCAAATGAGGCTCATTAAGTACTCATATCACTCCCCTTAGTAGGATAACTCCATGTACTCTTCATGCGTTCATCTTTACTTAAATGCATCTGAACTTATGGACCTAAATGTAGCAAATACATGTCAATTTTCTATATTTGGCATATTCTTTCCTTCTACATAAAATGGATTTTCTTTCCAAAGTGCATTCTTCTGCTAATTTGGTGAATATCAAGGCTTGTATTTATTTATCCATGATATATCTGGCATGATTTACAGATTCCTGGGCTAGTAAATGTGGATTTTGCTGATGTGCGTGCTATTATGGCAAATGCTGGGTCTTCTTTAATGGGAATAGGAACTGCTACAGGTAAGCTCAAAAAGCCATTTGATAGTTGTTGGCACTAAGCCATTTCTCTTTGTTGGTTGCCTTTTAACTCATAATGTCATGTGATTTTAAAGTCTATGTGATGTGATGATGTGGCTTAATGAGACACACATACAGCCAACATGGCTAAATCATTATTTATGTGAACTTCACAATACATTGAATCAAAAAAATCTATGTATTGTTATTACTGATATAAAGGGCGTATGCAGCCTCACCCAAGGGTGTGCCCTAGAGGTCTCAGGTTCAATTCTCAGTGGAGCCAAATACATTAGGTTATATCTTTCCATCTGGACAAGCCGTGGTGGGAGTTCCCCTTTATATGTTCTGGTGGGAATTAGTAGGTACCCCGTGAAATTAGTTGAGATGTGCGCAACCTGGTGTGGACACTATGGTTATCACAAAAAATGAACATATGCAGCTGTCAGAATTTATCCATGGTGTCCAAATTTATGTGCTACTTATAAAAGTTATCCACTAAACTTAAATATTGTATTCTGTTGAAGTCTTGTGTAAAATATTAGTCACGCCTGTGCCTATCAGTACGTATTTTGCACCAGTTCCATTTTTCTTGTGCAAACGTCAAGTCCTTGACATATTTTAAGGTTTATAAGAACTGTAACAATCTAAACTGAAATAACAAATAAGCTCAAGGCTAATTTCCTGAGAAGTATTTGAGGTCGCGTATGCAGCCTTACCCAAGGGTGTGGCCTAGAGGTCTCAGGTTCAATTCTCAGTGGAGCCAAAAACATTAGGTTATTTCTTCCCATCTGTACAAGCTTGGTGGATAGAGTTCCCCAGTACTTGTGCTGGTGGGAATTAGTAGGTACCCTGTGGAATTAGTTGAGATGCGCGCAAACTGGTGGGGACACTCGGAGTTCTTTTTTCGTCTGTATAGAGCTTAGTGAAATGTGTAAGTTGAGGTGCAATGAAGGTCATGTTCAGTAGACAAAATGTTTTGCATTTCAACGAATTTCATTTATTAACGAAGAGAACTGGCTGCTGCAGATAACCGGAACAATTTTGTGTGATATTTCAGAATTTTCATGTAAGAAACGAAATATGTATCTGTTTCAATCAGTCGTGAGTGCACACAGAGAACATAAGAGAGCAAAGGAGGGGGTAGGATTCTTAAAGTCTCAATTAGTTTCTCGTATCAGTCCCTATAAATAAATGTGAGATTACCATAGGCCATAGGGATAGAGCAAATTATTTTTTCTGATGCTGCAGCAGATGGCGGAGCAGCCATCTGAAGATGGTTCCGGCAGCCGATGCGCCGTTTGCACCGCCACTCGCCCTTTCATCCTCCACTTTCTCCCCTTCAGAGGTCGCAACCGCCATCTTTGCACCGCCTGCATACTGGACTCCTACCCTGTCGGCTGTTCCTTCTGTCCCATCTGCTTTGATGTCTTCCTCCACAGCCCTCCTCCCCCTCACCTCCATCTCCGATGCTCAAAATGCATCTCTATCTCACACCTCTCTTGTATCTCTGATGCTGCTTCCTTCTCCCCTAGTTACTTGTGCCCTCCTTTTTCTAACCCTAATTTTCTTTCTTCCATATCACTCCGGATCCTGCTAATAATGCCATAGAATCAATCTCCATTTGGCTAACAGATTGTTGCCGCTGCTACCATTGCTTCTGAGTCTATCCACAATGTTGCTGATATGGCCTGGATTAACGCCGACATTAGGGTCCAAGAAGCTCTGTCAGCTAAGGCCGAAGCTGCCCAAGTTTTGGTTAAGCTAAAGAATTTGTTGGGCAACCAAGATCATTAGTTCGGTTCCAATTTCTCGTCCACACTTGTTTCTAATACTCCAGGTAACGACACAGGGGGGAAAAGATAAATTGAAGCAAAAGGATGATCCTCTCAATAGATGCAAATGATTGTGATACCCTTGATGATTAGATTAAGTAGTTTCAATTCTAAAACAATGCTTTATAAGATTTTTCTTTTTTTGTTGTGTGGCTACTGGCATCTAGCAACTTCTCTCTATTTTTGAATGCTCGGCTATTTCAGGGGATGCTTTTTGGCGAACAAAGGAATTGGAATTATTCATTCAACTATATCTCGCTTACTGTTAATGCCTCTCTTTCAATATCGAGTTTTATATAATCTTTGATTTTAATATGGTATGCTCAATTATATCTTTTTTGTTGTTGGAGTTCTCTTTGACACATCTTGGGCTTACTATCCAAGGTAGTGGAGAGTCTGACGATGATGTCACACATCATATTCGTGTTGGGTGGATGAAATGGGGGCTCACATTTGTAGTCTTGTGTTATAAGAAGGTGTCACCAAAACATAAATGCAAGTTCTATAGAGTGGTGTTAGACCAACTATGTTGTATGGAGCGGAGTATTGGTCAGTCAAGAACCCTCACGTCTAGAAGATGAAAGTTGCGAAAATGAGGATACTGAGATGGATGTGTGGGCTTACTAGGAGAGATATGAATAGAAATGGAGATATCTGGGTCAAGGTGGGAGTGGGCTCGATGGAGGACAAACTGCGGAAATAGAGACTGAGATGGTTTAGGATGTAAAGAGGAAATGTTGGATTCCCCAATACAGAGGTGTGAGAGGTTTGCTATGGATGGTTTCAAGAGAGGTAGAGGTAGGCTGAAGAAGAAGTACTCGTGAGAAGTGACGTGACGTGTCTCAGCGTTAAATTACCGAGGACATGACTTTAGATAAGACTTGGGAGACTATGAAGTACATATACCCTTCCAGACTAGTAGTTGTAGCATTCCTCTTGCAGTTTCTTGTTCTTCATTTTCTATTACTATCGGTTATTTCTTGTTCAATTATAGTATTATTTTGTCATGATACTGCTCCGTTTTTTTTTTGAGAACACTTGTCATACTATCTTTAGTATTTTGTCGTGGTTTCTTCACTTCTAGTACTTCTTTTACCAGACTACTTTGTTTCTTGAGCCGACGGTCTATTGAAAACAACCTCTCTACCTCCCAAGGTAGGGGTAAGGTTTGCGTACACATTATCCTCCCCAGACCTCACTGGTTGGATTACAGTGGCTATGCTATTGTCTTTTAGTAATGAAGAACTCTTCTATTTTAGTTTCTAACTTGGTGGGTAATGGACCCACTCATTTATAGTTCGTTTCTACTTTTTTTTTGTAGAAATTGGATTTATTGTTGATAAATGTTGTGCAAACTATACTCTCAAAGAAAAAGAAATGAAATTGTATTGTGATATTTAACTTCTGAATCATGCATGCTAATTTTTTATTACCGTGATGTCCTGGTCAACTTGCGTGCACCTCGATTATTTCCACAGGTACCTACTATGTCCCACCAACATAGGTACTGCTAAAAGAGGTAATATAGAGTACATTAGGGAGTTCACGTAGGTTTTATAGAACCAATACAAACTTATGCATGGTAGATCTACTATAGATGCGATATGTTATTTTTATTAAGAAGATTAATGGATTTTTTTTGGGGAGGATGAATGATCTCCACATTGCTTGACCTAGAAAAACCTTTTGTTGGAGAATTTGGGAAGGTAGGTCTTATATCAAATAAAATAAATAAATGCCACAAGTGTCACTTTAGAAAAAGTTATCAAAAGTGTGAAAATAGTGAACGAGGTGCAAAGTATTTTTGCCAAAACTAAAGGTTTATACTAGTGCTGGCAGAATTTACCCACTTTTTGATAACCCTCCCATATTTAAGCGGATTTGGGTGAGTGATGAACCCATTTTCAAACTGTAAAAAAGTTGGTCGGTCATGGGTCAAGTATGGGTTGCCTTCAATCAGCTATCGTGCATCACTCACAATTTCTTCAAATTGTTTTTGCTTCAGCAACAACTTTCTAGCATCTACTATTCAAATACTTTTTGCTTTTTAGACTTACAGTAAAGACTTCAGTAGATATGATTTCCTTGCCACTGTTAACAATATATGCTCTTATTTTTATATATAAAAATTATCCCAAACTAGCTATGTGTTGTTGTATAATTAAATGAATACAATAGTTAACTAGATATGTAAGAACAACAAATAAATACACATCCACTAACTTACGCTAACACACACACACACACAAAATTACCAGAATCATCAAGTTACGGTATTACTAGATTTTAAAAGAAACACAAAGTCAGTTATATAAGATGGGTACTTATTTTATCAACAAGACGAACAATTTACTCAAAAACTATTTTTATTTATTTTAAATGTCTACGATGAAAACACATTTTATACGAGCTCTTTTATATGGAAAATATGGTTATGTGACTGATCATATTGTCTTGAGTTCTTGAATTATTCCCAAGTAGATTAAAAAATATAATATTGTGATATAACAAAAGTGAATATCTAGTTTCACCGATACACTGTTACAAATTATTAAACATAACTGAAGATATTATTTGTTCCAAAACCACATACTATGTAATGTGGGTAAACCCATTTTCAACCCGCCCATTAATGACCCAATCCATTTTTTACCCGCATGATTGGGTATTGACCCATGTTTGCTCAACCCGTTTCCAACCCGCCCATTTGCCACCAACAGTTTATACCAAGAATCTTCCTTGAGTTCACTTTTATCCTTATGGTTGAGCTAACCAAATGAAGGGAGAGTGAAATCAACGAGGATCGTGGTGCCCACGTGCAGACAATTCAGATCTTTTGGTTCAGCGTGCTTCTGCTAAAAGAAACATTTTCCAACTGAAACACCACCATAAAGGTAGAGAAGCATGGGGTGGGGGGAGACTTTGGGCCTTCATGGAGGGAGAAAAGGGTTCCATATTCGTGGCTCGAGGTTGTGAGGGAGTTATAGCCTTTGATTCCAATATGCTATGAAGAGAAATCTAAAGAAAAATGGCAGCCCAGTGCACTAAGCTCCCGCCATGCACAAATCCGATGAAGGGCCGGACTACTAGGTGGGTTTATTATATGCAACCTTACATTGCATTTCTGAAAGAGGCAGTTTCCGCAGATCGTACCCGTGACATGATCCCCTTTAACCTAAGCAGACATCTGCATTGACATAAATAGCTGCTTGTAGAAATTTCGAATAGTGACCTAAAAAATTGAATGTAATCTAAAAAGTAACATCTTTATCTGCTGATGTTCCCGTTAGGGAAATTGGAAAATAAACTCTTTGGACTGGACACATCTGACATGTTTCTGTGAGTTTCCTCCTATTATTGGATGCTATTTGGCTGCAGATTTAAGATTTCTTTCAATTCAGTCACTTGCTGACAATAGTGATTGATGGTCCATTTCCTGCTGGACCCCTTCTTACTTCTGGCTTTATTCTTGCGAAAGGTAGAAACTGTGTGCATTTTTCTACGTTGTTTTGGCTATTTGATAATATTTCATGTCCAATGTACAACAACAACAACATCATATCCAGTGTAGTCCCACAAAGTGAGGTCTGAGGGAGGGTAGAGTGTATGCAGACCTTACCCCTACCTTCAGAGGTAGAGAGGTTGTCTTCAATTGACCCTTAGCTCAAGGAAAACAGTCCCCAAAAAAAGAAGTAATAGAAGTACAGAAAAGAACAAATAATAACAAAACTGCAACAAAACCATACGATAGTCGAGGTATTAAGGAATCAGCAGCTATTAACATCAATCAATGGACAAGAAACTATAGGAGAAAAACTACGACTACTAATATGAACGGATAGCAAGACAATGCACTACTACCTACTATCCTAATTCATGACCTCCACTCCCTCCCATCTAAGGTCATGCCCTCGGTAAGCTGAAACTGTGTTATGTCATGTCCAATGTAAAACACCTAAATCTCATCTGTAATATAGCAGGTTCGCATGCAAAATATGCATATCAAGATTTCAGATATGTATATCGTCCATGTATGGTTTTGTGCATCTCTCTAATAGTCGGATTTAGCATTGCTAACAAGTTTTTTTTTTTTGCAAGAATGGAGTGATATGTTGATGCTTCTACTAACTAGTCAAGAGGAAAATTGATATTATTCGTTGATATTACAGGAAAGACCAGAGCGAGAGATGCAGCATTGAACGCCATTCAATCTCCTCTGCTGGATATCGGTATAGAGAGGGCTACTGGAATTGTGTGGAATATAACTGGTGGTAGTGATCTAACATTATTTGAGGTACCCGACTATTTTTTCTCTTGCTCTCTCTCTCTCTTCCGATACACTTACTAATCATCCTTAGTATGCACCTTTTGTTGACTGAAAAAGGCAGAAATGTATTCCATAACGTAGAAAAGATTTTGGCAGTAGAAGCCTTTTACTTTTTTCAATGTAGAGATTTTTCTTATTGAAGATGGCATATATGAATGTGTGAATTTCCTTGTATGATCGTCTCTTACAAAGAAAAATAAGAGAGAAACTTTATCTAATGGTGCATGAGGGTTGTGAAAAGCTATGTTGCTTAGACTCTTCAAAAATGTCGACGGGTGCGTGTCAGATCCTCCAAAAATAGTGTATTTTTGAAGGATCTGACACGGGTGCGGCAACATTTTTGGAGAGTCCAAGCAACTTAGGTGAAAAGATCAAACAACCTATGCTTCTGGTTCATCCTGTTTCCTTATCTGCTGTTTCTCAGCATTTATGTATGCCAATGTTGTCATTTTTAAAGTGCGCTTAAGCCTTGAAGCGTGGTACAAAACATGTTGAGCACTTTGCCTCGCTTTATGCACGCTTCAGTGTCGTCATCAAGGCATGCTTTTCCTTGCCAGTGAGAGTGAGTTTAGTCCTGAAGATGCGACACAATAAACAATTGATATTTCACGTTAGTTCTTGTCAATTTCTTTGTCCATATATTTATTATTCATGCTTGTGATTATTAATCTTGGACTACACATACATGTTTATATTTTTCTCCATAGCTCCATTTTTCAATAAATTCCACATTTGTGCTTAAAGCCTTAAAGGATCTTAGAGTTTTTTTACACTTTTCACTTATGATAAAACTGATGCACGCACACCAATTGTATGCTTGTTTTAGGCATCAAAATCATGTCAGACACAAATTCACTCATTAAAGCTATTGAACATGACCACACCTGCCAAGTTGGAGTTTCAAATTTCTCTAGATAATTTTTGGACCATTCGGCCCTTAAATTAGACTCTGAAAGGGATGCGAAGATTATAAGTTGTTATCCAATTTAATGAAGCTTTAAAACCAAAATATAATTTCAAGAAGTTAAAAATCTCATGCTGTATGCTATAAAAACAAGTTATAATGTTAAATTTGTAGACTTTTTGTGATTTTCACACCATTTGAACAAAACTTCAAAATGTAAGGAAGAAAATTGTTTTCATGCCTTCTTGGTAAAAATGTATATTGAAACTCTTTATCTTATGTTGGATAGAGACAATTGTATGCAAAGCAGTCTTTGTACCTTGAGTTGAAAATATGTTGTTAATAGTTAATGATTTTGGGGTCATATTTAAGCCTTGACCAGAATTATGTACAAATTTAAAATATCTATACTAGTTAATTGATGCTCTGATTTTTAAAGTTATGTCCAATCCTCTCGTGTACCCAACGTAGGTGTCCTTGGCCATGTTGCTTTTCTCCGCAATGACGATAACTGTTTTCTTAAATTTGGACCAGATATCAATTTATCATCATAACATCATTGTAGTGGTGATTTTGCCATATTCTCTCTATTATCAGTTTCAAAGCCTTCCTGACCTCCAAGTTTGCAGAAAGTTTATTGCTTTTTCTTAGTATAATAAAAAGCTTTCATCGTATGCATTTGTTATTTTATGTTTGTGAGCATCCCCGGATGATGCTAATTTCTGACTTATCTGATTAGCGAATTCAGCTTTCGTATCCTTGCATGTCCTCTTTGCACCTTTTTAGGTAAATGCTGCAGCAGAGGTTATATATGACCTTGTGGATCCAAGTGCTAACCTCATTTTTGGGGCGGTGATAGACCCATCAATAAGTGGACAGGTATGTTCGTATATCTCAATAGGTTATTCCTTCGTTGACTTGATTCTTTGCAGATCTTGACATGTACCGAAGCGAAAAATTATTGACTCCAAGGCTTCTTATTAGATAGTTGAAAGATTGAACAGTTATGTCATAAATTGGGAAACTGATCTTTAATTTAATCAGAGATGAGAAAGAATAAATAGTTGACTAATGGTAAAAAATATACCGTAAGTATCACCTTTTTTGCGAGTTTTATATCTGAACTATCACCAGCTATTTATAAAAACACAAGGTAGGGTAAGGTTGTGTATGCCAATCCTCCCCAGACCCCACTTGTGAGATTGCACCGTGTGTGTTGTCTTTGTATCTAGTTAGGATTAAGGCCCCCCCCACAAACACACACAGAAAAAAAAAAAAAAGAAAAAAAAAGTTTGAGGCTTGTATGTTAGTGTAGGGATAAAATGAGACTTGGAAAACTTGTTTACATCTCTGATTTGTCTCAATGGTGTTGAGGCGTAGAAGATCGATTGAACTCCTGTCGAATTTACGTTTTGCTGCATGGTCAATCTCATCATTATCCATGTGATGCAGGTCAGCATAACGCTGATTGCCACTGGTTTCAAGCGCCAAGAAGAAAGTGATATGAGGCCCCTCCAGGTATTCCTCTCTTCCATCCTATCCCTTCACATCTACATTACATGTGAAAATCTTTGGTTTTGCCGATCATTTGTGATACACATTCCACGGTGTTCAACTAACAGGGAAACCAACTAGCACAGGGAGATGCTTCACTTGGAACTAACAGACGACCTGCGTCCTTTCTGGAAGGTGGTTCAGTGGAAATTCCTGAGTTCCTCAGGAAAAAAGGGCGATTGCGCTATCCAAGAGCTTAAGTTAGTCCTTCATTTTCCTGCATGTATAGTACTTCCCTTTTTCTTCTTGTTCTCCAACATCTCTATCTTTCAAAGTGATACATATGCGTTATACATACAGGATCTTGGTTATGCATCGACTATCAAGTTTATCTCATGGAAAAACCATTGTCCATCTCGTTTTTCTT</genome_strand>
        <mrna_strand>CGTTTACGGCTCAGACATGGTTTTTGTGACT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGAATGGGTGGAGGAACAGGGACTGGTGCGGCTCCTATAATTGCAGGAACTGCCAAATCAATGGGTATCTTAACTGTTGGTATCGTTACAACCCCCTTTTCTTTTGAGGGACGAAGAAGAGCAGTTCAAGCCCAAGAAGGAATTGCAGCTTTGAGAGAAAATGTTGATACTCTGATTGTCATTCCAAATGACAAATTATTGACAGCTGTTTCTCCATCAACCCCAGTAACTGAAGCTTTTAACCTGGCTGATGATATTCTTCGGCAAGGAGTTCGTGGTATTTCTGATATAATTACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAATGCTGCAGCAGAGGTTATATATGACCTTGTGGATCCAAGTGCTAACCTCATTTTTGGGGCGGTGATAGACCCATCAATAAGTGGACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGCATAACGCTGATTGCCACTGGTTTCAAGCGCCAAGAAGAAAGTGATATGAGGCCCCTCCAG........................................................................................................GGAAACCAACTAGCACAGGGAGATGCTTCACTTGGAACTAACAGACGACCTGCGTCCTTTCTGGAAGGTGGTTCAGTGGAAATTCCTGAGTTCCTCANGAAAAAAGGGCGATTGCGCTATCCAAGAGCTTAA....................................................................................................GATCTTGGTTATGCATCGACTATCAAGTTTATCTCATGGAAAAACCATTGT-CATCTCGTTTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325732" ref_strand="+" ref_description="SGN-E325732 [cTOC-15-N5]">
      <seq>agacatggtttttgtgactgctggaatgggtggaggaacagggactggtgcggctcctataattgcaggaactgccaaatcaatgggtatcttaactgttggtatcgttacaacccccttttcttttgagggacgaagaagagcagttcaagcccaagaaggaattgcagctttgagagaaaatgttgatactctgattgtcattccaaatgacaaattattgacagctgtttctccatcaaccccagtaactgaagcttttaacctggctgatgatattcttcggcaaggagttcgtggtatttctgatataattacgattcctgggctagtaaatgtggattttgctgatgtgcgtgctattatggcaaatgctgggtcttctttaatgggaataggaactgctacaggaaagaccagagcgagagatgcagcattgaacgccattcaatctcctctgctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="+" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="38948" stop="53314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39248" g_stop="39266" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39267" i_stop="41750" i_length="2484">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41751" g_stop="42050" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="319" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42051" i_stop="46868" i_length="4818">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46869" g_stop="46959" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="410" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46960" i_stop="52960" i_length="6001">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52961" g_stop="53014" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="464" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="+" ref_id="SGN-E325732" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39248" e_stop="39266"/>
          <exon e_start="41751" e_stop="42050"/>
          <exon e_start="46869" e_stop="46959"/>
          <exon e_start="52961" e_stop="53014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATGGTTTTTGTGACTGTAAGTTCAACCTATGTAATAACTTTAATTGGAAAAAGAAGTTTTGGGTTATTGAAATACACTTTATTCTTTCCTTTGTTTTGTTTCCCCTCTCATTTGTCAGAAACTTAGATTTCATATACTATTGTATAGAAACTTCTAATTCTTTCTTTTATAGTAAAACTAAGTATCTTCTTTTCGTGAGATACTACTTTTCTTAGTTGCTCGGACCCTTCTGTTTCGGTTCCGCACCCGTGTTGACACGACGTGGGTGTGGGATCTGTAGCGGATATGGTCAATTGATTTTGGGTACTTTGACCAAAATCGGAGAAATTTGGGACAGATGCAATGATTTCTATAATCAAACCAAAAGCTAAGGTGAAATGAAGAAAATGAAATACCTTGTATATCAAAATTTCTATGTCAATCTTTTTCGTTATTTCTCCTTTTGGGATTCTCCTCATGATCAATATTTCTCATCTGAAGACTTTGTATATTGACCACATAATATCTCATAATTTAGACTTATTACCCTATTGGACACCCACACTCGAATTTGAACAACTTAGCTTCTTTCTGTCCAATGTGCAGAGCAGCTGAAAGGTTTTTTCTAGTTATAGTACCAGATTGAATTGGTTAAATAAAATGCAGAATTCCTATGTTACATGTAACTTTAGGTAATGAAGTGCAGTTAAAGTATACTCACTTAAACCTGGCAACACTCTTCCTCCCACCCCGTCAAAATTTCTGAGCTCTTTCCCTGGCCCATAAAGATACTTGATACAGTAAAGGATGACTGTTGGAGGAAAGTACACTTAAATATGCTTTTTATAAACAAAGTTCAGTGTCTTTGGTGCTCATTAGAAAGATAGGTGTCACATTAGTCTGCTCCATCCCTTACAGCTTCTCTGATCTACCAACTTGAAATTGCTAATGTGCAACCTGAAGTGTGTCTGACTGCCTATTGCCTTCGTACTGCATAAGCTAAAGAGTTGAGGAGAATTAGTAGAGGAAGGAATCATTTAGTTTTTGATATAATATACGAGTATCTTAATAGCCATTAACGCTACCAAATAAATTTGAAGTATATATTAATGGCTATTAATTGGCATTTTATATGTTTCTATGATTATGATTCTTTCAATAGTTTTCTGAATATTTCTAACTTGTGACTTACATACTTTTTTTTTTAAGTTTCTAAAGATCTAATCATTCACAATTTTTTTTTTGGTAATAATCAATATTTAAATTAACACCGAAAATTATATGTTTTGCCTTTCGTACTTCAAACCGTACCTTCATTTCGGAAAGGAGGGTGAATTTTATATATAGTATTATTTTGTGAGGCAATGAGAAGATATTTCTAGTAACACAAGTTCCCAAATACGTGTGTACTTAGTATTCTCAGTTTAAAAGGGAAGGGTTGATAACAAGCAAAAAGGGGTCATTAGGCGAATCGGGAGCTGGAGAGAATAAATTTTGTTATTCTTAGCTTTTGAAATTGCAATCTGAAAATTGTTTCTGATTTATCTGATAGGACAAAAATAAACGATATTTCACAAGGATCTGGCGTATTGTATCATCCTTGCAAAGAGTTGATAAACTTTCAAAACAAAACATGCTTAATTGAATGAGAGGCTATGTTGGTACAAGCCTACAAGCGTAAACAGATGATAACTAAAATGGTGCTTGTAGCATGGCTATATCTTTGTATCAATCCAATACCAAGATATTTTAAACTTCAAATTATATCCGGAAGTCACAATTAAGTTTCTCTTAATGTGAAGAGACATTTTTTAGCATAATCATAAAAAAAGGATGTACCCAAGAATGTAATTTAAATTTATTCCTTGGCCTTTTGGTTCCAAGACTTTGTCAGATTGCATTAGCCTTATTAATCATCAACATGGTGCTATAAGCATCCAAGAAGGGCATCATATAGTACGCCATAAAAAAGTAAAACGTGTATACCTACCCTTCATCCGAGATGGTATCAGGCCGTTTCTTGGTGTAAGAGAGGAATCTGATCTCCCGTTCTTTTGATTTTCGTGCCATGCTTATCATTCAATCAGTTTTGTAAAAGGCGTGCTTGTTCAAAAACTGAAGCGAGACTCAAAATGTGTTGAGCGCTTTACCTCGTGTAATTTGCCCTTCAGTGTTGTCATCAAGGTTCCAAGGCATACTTTTTCTTGCCAGTGAGCCTCTTCTGAAGAGGCGACGTATGTTTCTCCCTTTGCGCCTTTTATCATTGAAGCCCAAACCTTATTTGTGCTTAAAGCTCCAATGGACCTTAGATCTTTTTTGTGCTTTTTGCTTTTGATATCAATCACTGCATTGAATACTAAGTATATATTTGCTTGAAAGTGCTGTAAAGCTAAATGTGGGATGATTACGTGTTATTATATGTAAATTAAAATTCCTCACATATCTTTAGAGTTTCCGGAGGCTATATTCTCTCACTTTTTGTTTCTTCCTCATATGTGGGCTCCAACATGTTATGTACAGGCTGGAATGGGTGGAGGAACAGGGACTGGTGCGGCTCCTATAATTGCAGGAACTGCCAAATCAATGGGTATCTTAACTGTTGGTATCGTTACAACCCCCTTTTCTTTTGAGGGACGAAGAAGAGCAGTTCAAGCCCAAGAAGGAATTGCAGCTTTGAGAGAAAATGTTGATACTCTGATTGTCATTCCAAATGACAAATTATTGACAGCTGTTTCTCCATCAACCCCAGTAACTGAAGCTTTTAACCTGGCTGATGATATTCTTCGGCAAGGAGTTCGTGGTATTTCTGATATAATTACGGTAAGTTTGTTAGTCACAGTCTTTTCTTTCATTTTCTGTTTTCTGCTTGCATAGTGCCTATGATCCTAAATAAGCATTTGCCTGATAATGCTTTAGGTCTAGGATCTTACTTTTATATGCATCACCAGGATGTGTTTTGTTTGTTCTATGCTTTGAAGGGAAATCTTAAACTATACACAGGTGAAGTATAAATCTCTAGATTTCCTCGCGCCTTAGTGTAAAACAAAGATGTATAACAACAAAAATAGCAACATACCCAGCGTAATACTACAAGTGGGATCTGGGGAGGGTGGTGTGTCCGCAACCTTACCCCTTACCTTGTGAAGATAGAGAGGGTGTTTCCGATAGACCCTCGGCTCATGATAAGGTAAAAATCGTCGTAGTAAATATAATCAATGCAATTGAAAGTTAGAGCTGATCTTACATGTGTTTAAGCAAGATAGGAGAAATAAAAACTAAGAATTGGTTATGCCACAACAAATTGCCAATCTAAGGATTTGTATCGAAATAGATTAGGTGTTAAATGATACCTTATGTATTTCGGATGGAATATATAAAAAAGCATATGCATTTTCTATGGAATAATTTAGTCATAGGTCTAAAGTGTATTAGGGAGCACAATATTAAGTTGTAATGTATGCACTATGTGAATTTAGTGTTATTGGGCATAAAATTGTGATATTGCTTAAAAGGAATCTTGAAAATAACACTGGAAGTGATGAACATGATGTCTAAAAAGGGAAGTAATTAGTTTAACAACTTTAATCAAGCTAATCAAGGTTAAAAAGTAACAATAATGTAACTAATTATAGGTGTAAAATCTTCTTATAAGGTTCTATTGCGCTTGAGTTGTCGAGATTTTTTTCTTGAATCACATTAGGAGAAAATGATGTGAATACAACTTTAAGGAGGTGTCATTCAATGAAGCCTGGCTCACAAATGATGGTTGCCCTCGTCTCTTTTTAGTGTTTTGACATTGATATTAGTAAGTGGAAAGGGCAATTCCTGCATACGACCCACCCATTTGTTAACACTCATTTGGTACGTTATCAATAATGTAAAATGATGGTACATTTTGTGAGAAACAAAAATTTGAGATGGAACCAAATTGATTATTCTGACAAGTTATTGAGGCTTAAATAGCTAAGTTTATATGACCTGTAAAGGAAAGGAAATCAAAACAAATAAATACCTAATTAAAATAGGAGTAAATCAAGCTACCTACTATATTTGCCCATATGCTATAAAATAGTTCTAGGACTCTTAACACCCCTTCAAGCTGATGCATACAAAATTACAAATTAGATGTACCAAGCTTGTTTCATATATAACTCATTTGGGACCGGCTAAGGACTTGGTGAATGTGCCTGCAAGCTGATGATCAGTAGGCCTACAATTTGTCATCCATGTCTCTTCAAGAATATCAAGTGCATATTTCCTATGTGAGATGACAATTCTTGATTTGGATTGAGCAACCTCAATGCCCACGAAGTACCTCAATCGACCAAGATCCTTAGTCTGAAAGTGCTGGAAAAAGTGATGTCTGAATTTGGTAATTCCCTCATCATCATTACCTGTGATAAATGTGCCATAAATGTACACTTTCAAAAACATGCACAAACCTGGAGCAAAGTGACAATAGAACACAAAATGATCAGCTTCACTTCGTACCATGCCAAACTCCTGAATAGCCATGCTAAACTTTTCAAACCATGCCCGAGGAGACTGTTTGAAGCCACAAAGTGCTCGTTGTAGTCTCCATACCATGTTACTAACCTCCCTCAGAGCAACAAAACCAGATGGTTGTTTTATATATACCTCATCTTCGAGATCTCCATGAAAAAAGACATTTTTGATATACAACTGGTAGAGAGGCCAATGACGAACATTAACCATGGATAAAAAGATATGGACTGAAGTAATCTTGGCCACATGAGGGAAGATATCATCATTGTCAAGACCAAAAGTCTGTGTATAAACCTTGACCATTAGTTGAGTTGTCTGTCCATTGGGGCCTACCTTCATTGTATATACCCAACAACAACCAATTGTGGATTTATCTAGAGGTAGAGGAATAAGCTCCCAAGTACCACTAGATTGTAAGGCAGGCATCTCCTCAATCATAGCTTCTTGTTGGTCTGGATGAGAAAGAGCTTCACGTGTAGTCTTAGGAATAGACACAAAGGATGGTGATGATACAAAGGCAATATGGGTTGTTGGCAAACAATGATAGCTCAAACAAGTATAAATAGGATTAGGGTTACGAGTAGAGCAATTACCTTTTCGAGTGTCAGCGGAAGAACTCAGTGTAGACAAGTCCTCAGTAGGCAAGGATTTTGATGAAGGGTTTGAATCATTTGGGCGCGGACGACGATGATAGGTCAATAGTGGTGGAGGTGTAGAGGAGGAAGATGGAGTTATAGAAGATGAGGCGGAAGGGGAGACTATGGTGGGATCTCCAAAAGATGGAATTGGTAGAACCTCATTAATGCCTAATTTTTCAACAGAGGATGTAAAGTAGGGCTTACCTTCAAAAAAAGTAACATCAACGGACATAAGGTATCGCTGGAGGTGAGGTGAGAAACATCGGTATCCCTTCTCTACTTCTGAAAAACCAAGAAAGACACATTTAAGAGCACAAGGAGCTAATTTTTCTTTTTCTGGAGTGAGTGTATGGACAAAGCATGTGCTCCCAAAGACACGTGGTGGAAGAGAAAATAAGGTTGACTGGGGAAATAAAATAGAGTGTGGAACCTGATTTTGAATAGCAAAGGAAGGCATACGGTTAATCAGATAACAAGAGGTGAGCACTACATCCCCCCAAGATCCAATGGAACACTTGCTTGTATGAGAAGAGTGCGTGCAGTCTTAACAATATGACTATTTTTTCTCTTTGCAACCCTATTTTGTTGTGTAGTATAAGGACAAAATGTTTGATGAAGTATTCCACTGGACGACAGAAATTGTTTAAATTGAGATGATAAATATTCACGCGCATTATCACTACGAAAAGTGCGAATAGAAACACCAAATTGAGTTCTTACTTCAGCACAAAAAGTTTGAAATATGAAAGCTAATTCAGAAAGATCTTTCATTAAGAACACCCAAGTGTACCTTGAGTAATCATCAACGAAATGCTTAAAATTCAATGTAGAACTAATTCTACTAGGACCCCAAATATCATAATGAACTAAATGAAAAGGAGACTCCGCATAATTATTAGGACTACGTGAAAAAAAAAATTGGGTGTGCTTCCCTAGTTGACAGGACTCACAATCTAACTTAGACAATTTAGACAAGTTAGGTATCATCTTTTGAAGTTTGGATAAACTAGGGTGTCCCAATCGTCTGTGGATTAAATCTGGAGAGTCAGATATTGAACAAACTGTAGTGGATTCATGAGGATTAAGATAATAAAGTCCATTTGACTCATGCCCTTCTCCAATTATCCTTCCTGTACAGAGGTCTTGTATAACAAAGAAGTCACTAAAGAATGAGACGAAACAATTTAAAGTCTGAGCCAAACGACTTATTGACATGAGGCTAAAGAGACAACCAGGGACAAGAAGAACATTATTCAGAGTCAAGGAAGGTAAGGGATTGGCTTGACCGATTCCGGTTGCCTTGGTTTGAGAACCATTAGCTATCCTAATTGTGGGAAGGGACTGAGAGTAAATAATATCAGACAATACAAATTTGTCACCAGTAACGTGGGTAGCAGCGCCTGAGTCCATGACCCAACAACCATGTGTGGTGGATTGTGAGATACTAGTGGCAGGATTAACAGGATTACCATTTTTGGCAGCTATTGATGAAGATGTCTGCTTACTCGCCTGGTACTGAAGAAAGTCATTGTATTCTATCTCAGACAAAGAGACCAGTCGATTGGTTGGATTACCAGTGGATTCAGTTTGAGGGTTGCTGGAGCCCATTAATTTAGTGCCAAACATGTTGAATCCAAGAGAAATGAAAACAGATCTATCAGTGTCCAAAAAAAAACGTGAATTTCGGAAAAGCACCTGAAATATAGATTGGAAAAACTGCTTGTTGTCTCGCTGGAAAATTAGATCTGACCGCTGGAAAGTGATTGAAATTAGTAAAGAAATTAAATGGGTAGGGTCGGAATGTTGCAACGAATCTACTGAAAAAGGAATCTGCTGGAGAAGTGGTCGGAAAACATCAAGCGAGGATTCTGATTGTAACGGTGGTACTGATATATGCAAAGTACCCCTGGAGAATGTCGAAATTGTGGACTATGGAGGTTTTGCTGGAAAAACGCTCAACAATTTTGTTCCCTTACTTTATTCATGTTTTCTCACTAAAGAAAACTTTAATAAAGAATAAGAGTTTGAGAGAGAATTCACCTTGATTATTCCCACTAGCTATTGGGAATCAAGCTACCTACTATATACACACACACACACACACACACACACACACACTATAGAATATTCCATGATTTTAACACACTTTATCAAAAAATAAAAGAAGTAAAATGATGGCTCATTTATCACCACAAGCTTTTGATACTTACCATAGGATCCTCTTACTACTTCCAAGGCAAATGAGGCTCATTAAGTACTCATATCACTCCCCTTAGTAGGATAACTCCATGTACTCTTCATGCGTTCATCTTTACTTAAATGCATCTGAACTTATGGACCTAAATGTAGCAAATACATGTCAATTTTCTATATTTGGCATATTCTTTCCTTCTACATAAAATGGATTTTCTTTCCAAAGTGCATTCTTCTGCTAATTTGGTGAATATCAAGGCTTGTATTTATTTATCCATGATATATCTGGCATGATTTACAGATTCCTGGGCTAGTAAATGTGGATTTTGCTGATGTGCGTGCTATTATGGCAAATGCTGGGTCTTCTTTAATGGGAATAGGAACTGCTACAGGTAAGCTCAAAAAGCCATTTGATAGTTGTTGGCACTAAGCCATTTCTCTTTGTTGGTTGCCTTTTAACTCATAATGTCATGTGATTTTAAAGTCTATGTGATGTGATGATGTGGCTTAATGAGACACACATACAGCCAACATGGCTAAATCATTATTTATGTGAACTTCACAATACATTGAATCAAAAAAATCTATGTATTGTTATTACTGATATAAAGGGCGTATGCAGCCTCACCCAAGGGTGTGCCCTAGAGGTCTCAGGTTCAATTCTCAGTGGAGCCAAATACATTAGGTTATATCTTTCCATCTGGACAAGCCGTGGTGGGAGTTCCCCTTTATATGTTCTGGTGGGAATTAGTAGGTACCCCGTGAAATTAGTTGAGATGTGCGCAACCTGGTGTGGACACTATGGTTATCACAAAAAATGAACATATGCAGCTGTCAGAATTTATCCATGGTGTCCAAATTTATGTGCTACTTATAAAAGTTATCCACTAAACTTAAATATTGTATTCTGTTGAAGTCTTGTGTAAAATATTAGTCACGCCTGTGCCTATCAGTACGTATTTTGCACCAGTTCCATTTTTCTTGTGCAAACGTCAAGTCCTTGACATATTTTAAGGTTTATAAGAACTGTAACAATCTAAACTGAAATAACAAATAAGCTCAAGGCTAATTTCCTGAGAAGTATTTGAGGTCGCGTATGCAGCCTTACCCAAGGGTGTGGCCTAGAGGTCTCAGGTTCAATTCTCAGTGGAGCCAAAAACATTAGGTTATTTCTTCCCATCTGTACAAGCTTGGTGGATAGAGTTCCCCAGTACTTGTGCTGGTGGGAATTAGTAGGTACCCTGTGGAATTAGTTGAGATGCGCGCAAACTGGTGGGGACACTCGGAGTTCTTTTTTCGTCTGTATAGAGCTTAGTGAAATGTGTAAGTTGAGGTGCAATGAAGGTCATGTTCAGTAGACAAAATGTTTTGCATTTCAACGAATTTCATTTATTAACGAAGAGAACTGGCTGCTGCAGATAACCGGAACAATTTTGTGTGATATTTCAGAATTTTCATGTAAGAAACGAAATATGTATCTGTTTCAATCAGTCGTGAGTGCACACAGAGAACATAAGAGAGCAAAGGAGGGGGTAGGATTCTTAAAGTCTCAATTAGTTTCTCGTATCAGTCCCTATAAATAAATGTGAGATTACCATAGGCCATAGGGATAGAGCAAATTATTTTTTCTGATGCTGCAGCAGATGGCGGAGCAGCCATCTGAAGATGGTTCCGGCAGCCGATGCGCCGTTTGCACCGCCACTCGCCCTTTCATCCTCCACTTTCTCCCCTTCAGAGGTCGCAACCGCCATCTTTGCACCGCCTGCATACTGGACTCCTACCCTGTCGGCTGTTCCTTCTGTCCCATCTGCTTTGATGTCTTCCTCCACAGCCCTCCTCCCCCTCACCTCCATCTCCGATGCTCAAAATGCATCTCTATCTCACACCTCTCTTGTATCTCTGATGCTGCTTCCTTCTCCCCTAGTTACTTGTGCCCTCCTTTTTCTAACCCTAATTTTCTTTCTTCCATATCACTCCGGATCCTGCTAATAATGCCATAGAATCAATCTCCATTTGGCTAACAGATTGTTGCCGCTGCTACCATTGCTTCTGAGTCTATCCACAATGTTGCTGATATGGCCTGGATTAACGCCGACATTAGGGTCCAAGAAGCTCTGTCAGCTAAGGCCGAAGCTGCCCAAGTTTTGGTTAAGCTAAAGAATTTGTTGGGCAACCAAGATCATTAGTTCGGTTCCAATTTCTCGTCCACACTTGTTTCTAATACTCCAGGTAACGACACAGGGGGGAAAAGATAAATTGAAGCAAAAGGATGATCCTCTCAATAGATGCAAATGATTGTGATACCCTTGATGATTAGATTAAGTAGTTTCAATTCTAAAACAATGCTTTATAAGATTTTTCTTTTTTTGTTGTGTGGCTACTGGCATCTAGCAACTTCTCTCTATTTTTGAATGCTCGGCTATTTCAGGGGATGCTTTTTGGCGAACAAAGGAATTGGAATTATTCATTCAACTATATCTCGCTTACTGTTAATGCCTCTCTTTCAATATCGAGTTTTATATAATCTTTGATTTTAATATGGTATGCTCAATTATATCTTTTTTGTTGTTGGAGTTCTCTTTGACACATCTTGGGCTTACTATCCAAGGTAGTGGAGAGTCTGACGATGATGTCACACATCATATTCGTGTTGGGTGGATGAAATGGGGGCTCACATTTGTAGTCTTGTGTTATAAGAAGGTGTCACCAAAACATAAATGCAAGTTCTATAGAGTGGTGTTAGACCAACTATGTTGTATGGAGCGGAGTATTGGTCAGTCAAGAACCCTCACGTCTAGAAGATGAAAGTTGCGAAAATGAGGATACTGAGATGGATGTGTGGGCTTACTAGGAGAGATATGAATAGAAATGGAGATATCTGGGTCAAGGTGGGAGTGGGCTCGATGGAGGACAAACTGCGGAAATAGAGACTGAGATGGTTTAGGATGTAAAGAGGAAATGTTGGATTCCCCAATACAGAGGTGTGAGAGGTTTGCTATGGATGGTTTCAAGAGAGGTAGAGGTAGGCTGAAGAAGAAGTACTCGTGAGAAGTGACGTGACGTGTCTCAGCGTTAAATTACCGAGGACATGACTTTAGATAAGACTTGGGAGACTATGAAGTACATATACCCTTCCAGACTAGTAGTTGTAGCATTCCTCTTGCAGTTTCTTGTTCTTCATTTTCTATTACTATCGGTTATTTCTTGTTCAATTATAGTATTATTTTGTCATGATACTGCTCCGTTTTTTTTTTGAGAACACTTGTCATACTATCTTTAGTATTTTGTCGTGGTTTCTTCACTTCTAGTACTTCTTTTACCAGACTACTTTGTTTCTTGAGCCGACGGTCTATTGAAAACAACCTCTCTACCTCCCAAGGTAGGGGTAAGGTTTGCGTACACATTATCCTCCCCAGACCTCACTGGTTGGATTACAGTGGCTATGCTATTGTCTTTTAGTAATGAAGAACTCTTCTATTTTAGTTTCTAACTTGGTGGGTAATGGACCCACTCATTTATAGTTCGTTTCTACTTTTTTTTTGTAGAAATTGGATTTATTGTTGATAAATGTTGTGCAAACTATACTCTCAAAGAAAAAGAAATGAAATTGTATTGTGATATTTAACTTCTGAATCATGCATGCTAATTTTTTATTACCGTGATGTCCTGGTCAACTTGCGTGCACCTCGATTATTTCCACAGGTACCTACTATGTCCCACCAACATAGGTACTGCTAAAAGAGGTAATATAGAGTACATTAGGGAGTTCACGTAGGTTTTATAGAACCAATACAAACTTATGCATGGTAGATCTACTATAGATGCGATATGTTATTTTTATTAAGAAGATTAATGGATTTTTTTTGGGGAGGATGAATGATCTCCACATTGCTTGACCTAGAAAAACCTTTTGTTGGAGAATTTGGGAAGGTAGGTCTTATATCAAATAAAATAAATAAATGCCACAAGTGTCACTTTAGAAAAAGTTATCAAAAGTGTGAAAATAGTGAACGAGGTGCAAAGTATTTTTGCCAAAACTAAAGGTTTATACTAGTGCTGGCAGAATTTACCCACTTTTTGATAACCCTCCCATATTTAAGCGGATTTGGGTGAGTGATGAACCCATTTTCAAACTGTAAAAAAGTTGGTCGGTCATGGGTCAAGTATGGGTTGCCTTCAATCAGCTATCGTGCATCACTCACAATTTCTTCAAATTGTTTTTGCTTCAGCAACAACTTTCTAGCATCTACTATTCAAATACTTTTTGCTTTTTAGACTTACAGTAAAGACTTCAGTAGATATGATTTCCTTGCCACTGTTAACAATATATGCTCTTATTTTTATATATAAAAATTATCCCAAACTAGCTATGTGTTGTTGTATAATTAAATGAATACAATAGTTAACTAGATATGTAAGAACAACAAATAAATACACATCCACTAACTTACGCTAACACACACACACACACAAAATTACCAGAATCATCAAGTTACGGTATTACTAGATTTTAAAAGAAACACAAAGTCAGTTATATAAGATGGGTACTTATTTTATCAACAAGACGAACAATTTACTCAAAAACTATTTTTATTTATTTTAAATGTCTACGATGAAAACACATTTTATACGAGCTCTTTTATATGGAAAATATGGTTATGTGACTGATCATATTGTCTTGAGTTCTTGAATTATTCCCAAGTAGATTAAAAAATATAATATTGTGATATAACAAAAGTGAATATCTAGTTTCACCGATACACTGTTACAAATTATTAAACATAACTGAAGATATTATTTGTTCCAAAACCACATACTATGTAATGTGGGTAAACCCATTTTCAACCCGCCCATTAATGACCCAATCCATTTTTTACCCGCATGATTGGGTATTGACCCATGTTTGCTCAACCCGTTTCCAACCCGCCCATTTGCCACCAACAGTTTATACCAAGAATCTTCCTTGAGTTCACTTTTATCCTTATGGTTGAGCTAACCAAATGAAGGGAGAGTGAAATCAACGAGGATCGTGGTGCCCACGTGCAGACAATTCAGATCTTTTGGTTCAGCGTGCTTCTGCTAAAAGAAACATTTTCCAACTGAAACACCACCATAAAGGTAGAGAAGCATGGGGTGGGGGGAGACTTTGGGCCTTCATGGAGGGAGAAAAGGGTTCCATATTCGTGGCTCGAGGTTGTGAGGGAGTTATAGCCTTTGATTCCAATATGCTATGAAGAGAAATCTAAAGAAAAATGGCAGCCCAGTGCACTAAGCTCCCGCCATGCACAAATCCGATGAAGGGCCGGACTACTAGGTGGGTTTATTATATGCAACCTTACATTGCATTTCTGAAAGAGGCAGTTTCCGCAGATCGTACCCGTGACATGATCCCCTTTAACCTAAGCAGACATCTGCATTGACATAAATAGCTGCTTGTAGAAATTTCGAATAGTGACCTAAAAAATTGAATGTAATCTAAAAAGTAACATCTTTATCTGCTGATGTTCCCGTTAGGGAAATTGGAAAATAAACTCTTTGGACTGGACACATCTGACATGTTTCTGTGAGTTTCCTCCTATTATTGGATGCTATTTGGCTGCAGATTTAAGATTTCTTTCAATTCAGTCACTTGCTGACAATAGTGATTGATGGTCCATTTCCTGCTGGACCCCTTCTTACTTCTGGCTTTATTCTTGCGAAAGGTAGAAACTGTGTGCATTTTTCTACGTTGTTTTGGCTATTTGATAATATTTCATGTCCAATGTACAACAACAACAACATCATATCCAGTGTAGTCCCACAAAGTGAGGTCTGAGGGAGGGTAGAGTGTATGCAGACCTTACCCCTACCTTCAGAGGTAGAGAGGTTGTCTTCAATTGACCCTTAGCTCAAGGAAAACAGTCCCCAAAAAAAGAAGTAATAGAAGTACAGAAAAGAACAAATAATAACAAAACTGCAACAAAACCATACGATAGTCGAGGTATTAAGGAATCAGCAGCTATTAACATCAATCAATGGACAAGAAACTATAGGAGAAAAACTACGACTACTAATATGAACGGATAGCAAGACAATGCACTACTACCTACTATCCTAATTCATGACCTCCACTCCCTCCCATCTAAGGTCATGCCCTCGGTAAGCTGAAACTGTGTTATGTCATGTCCAATGTAAAACACCTAAATCTCATCTGTAATATAGCAGGTTCGCATGCAAAATATGCATATCAAGATTTCAGATATGTATATCGTCCATGTATGGTTTTGTGCATCTCTCTAATAGTCGGATTTAGCATTGCTAACAAGTTTTTTTTTTTTGCAAGAATGGAGTGATATGTTGATGCTTCTACTAACTAGTCAAGAGGAAAATTGATATTATTCGTTGATATTACAGGAAAGACCAGAGCGAGAGATGCAGCATTGAACGCCATTCAATCTCCTCTGCTGG</genome_strand>
        <mrna_strand>AGACATGGTTTTTGTGACT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGAATGGGTGGAGGAACAGGGACTGGTGCGGCTCCTATAATTGCAGGAACTGCCAAATCAATGGGTATCTTAACTGTTGGTATCGTTACAACCCCCTTTTCTTTTGAGGGACGAAGAAGAGCAGTTCAAGCCCAAGAAGGAATTGCAGCTTTGAGAGAAAATGTTGATACTCTGATTGTCATTCCAAATGACAAATTATTGACAGCTGTTTCTCCATCAACCCCAGTAACTGAAGCTTTTAACCTGGCTGATGATATTCTTCGGCAAGGAGTTCGTGGTATTTCTGATATAATTACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGACCAGAGCGAGAGATGCAGCATTGAACGCCATTCAATCTCCTCTGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732350" ref_strand="+" ref_description="SGN-E732350 [LB01DG04]">
      <seq>ctctgctggatatcggtatagagagggctactggaattgtgtggaatataactggtggtagtgatctaacattatttgaggtaaatgctgcagcagaggttatatatgaccttgtggatccaagtgctaacctcatttttggggcggtgatagacccatcaataagtggacaggtcagcataacgctgattgccactggtttcaagcgccaagaagaaagtgatatgaggcccctccagggaaaccaactagcacagggagatgcttcacttggaactaacagacgacctgcgtcctttctggaaggtggttcagtggaaattcctgagttcctcaggaaaaaagggcgattgcgctatccaagagcttaagacaggatcttggttatgcatcgactatcaagtttatctcatggaaaaaccattgtccatctcgtttttctttataataatgtagaattgcctatacatgttagtttgttagtgagtgtaataaagctggagatactatcaaaggtagacaattaggatcacaatcagtctggtttcacctatgatctgtaaagtgttgctgtaaagttgatatccattgacgaacttgtgcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="+" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="52706" stop="56410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53006" g_stop="53085" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53086" i_stop="54808" i_length="1723">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54809" g_stop="54901" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="173" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54902" i_stop="55474" i_length="573">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55475" g_stop="55540" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="239" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55541" i_stop="55644" i_length="104">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55645" g_stop="55776" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="371" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55777" i_stop="55871" i_length="95">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55872" g_stop="56115" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="615" r_length="244" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="+" ref_id="SGN-E732350" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53006" e_stop="53085"/>
          <exon e_start="54809" e_stop="54901"/>
          <exon e_start="55475" e_stop="55540"/>
          <exon e_start="55645" e_stop="55776"/>
          <exon e_start="55872" e_stop="56115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGCTGGATATCGGTATAGAGAGGGCTACTGGAATTGTGTGGAATATAACTGGTGGTAGTGATCTAACATTATTTGAGGTACCCGACTATTTTTTCTCTTGCTCTCTCTCTCTCTTCCGATACACTTACTAATCATCCTTAGTATGCACCTTTTGTTGACTGAAAAAGGCAGAAATGTATTCCATAACGTAGAAAAGATTTTGGCAGTAGAAGCCTTTTACTTTTTTCAATGTAGAGATTTTTCTTATTGAAGATGGCATATATGAATGTGTGAATTTCCTTGTATGATCGTCTCTTACAAAGAAAAATAAGAGAGAAACTTTATCTAATGGTGCATGAGGGTTGTGAAAAGCTATGTTGCTTAGACTCTTCAAAAATGTCGACGGGTGCGTGTCAGATCCTCCAAAAATAGTGTATTTTTGAAGGATCTGACACGGGTGCGGCAACATTTTTGGAGAGTCCAAGCAACTTAGGTGAAAAGATCAAACAACCTATGCTTCTGGTTCATCCTGTTTCCTTATCTGCTGTTTCTCAGCATTTATGTATGCCAATGTTGTCATTTTTAAAGTGCGCTTAAGCCTTGAAGCGTGGTACAAAACATGTTGAGCACTTTGCCTCGCTTTATGCACGCTTCAGTGTCGTCATCAAGGCATGCTTTTCCTTGCCAGTGAGAGTGAGTTTAGTCCTGAAGATGCGACACAATAAACAATTGATATTTCACGTTAGTTCTTGTCAATTTCTTTGTCCATATATTTATTATTCATGCTTGTGATTATTAATCTTGGACTACACATACATGTTTATATTTTTCTCCATAGCTCCATTTTTCAATAAATTCCACATTTGTGCTTAAAGCCTTAAAGGATCTTAGAGTTTTTTTACACTTTTCACTTATGATAAAACTGATGCACGCACACCAATTGTATGCTTGTTTTAGGCATCAAAATCATGTCAGACACAAATTCACTCATTAAAGCTATTGAACATGACCACACCTGCCAAGTTGGAGTTTCAAATTTCTCTAGATAATTTTTGGACCATTCGGCCCTTAAATTAGACTCTGAAAGGGATGCGAAGATTATAAGTTGTTATCCAATTTAATGAAGCTTTAAAACCAAAATATAATTTCAAGAAGTTAAAAATCTCATGCTGTATGCTATAAAAACAAGTTATAATGTTAAATTTGTAGACTTTTTGTGATTTTCACACCATTTGAACAAAACTTCAAAATGTAAGGAAGAAAATTGTTTTCATGCCTTCTTGGTAAAAATGTATATTGAAACTCTTTATCTTATGTTGGATAGAGACAATTGTATGCAAAGCAGTCTTTGTACCTTGAGTTGAAAATATGTTGTTAATAGTTAATGATTTTGGGGTCATATTTAAGCCTTGACCAGAATTATGTACAAATTTAAAATATCTATACTAGTTAATTGATGCTCTGATTTTTAAAGTTATGTCCAATCCTCTCGTGTACCCAACGTAGGTGTCCTTGGCCATGTTGCTTTTCTCCGCAATGACGATAACTGTTTTCTTAAATTTGGACCAGATATCAATTTATCATCATAACATCATTGTAGTGGTGATTTTGCCATATTCTCTCTATTATCAGTTTCAAAGCCTTCCTGACCTCCAAGTTTGCAGAAAGTTTATTGCTTTTTCTTAGTATAATAAAAAGCTTTCATCGTATGCATTTGTTATTTTATGTTTGTGAGCATCCCCGGATGATGCTAATTTCTGACTTATCTGATTAGCGAATTCAGCTTTCGTATCCTTGCATGTCCTCTTTGCACCTTTTTAGGTAAATGCTGCAGCAGAGGTTATATATGACCTTGTGGATCCAAGTGCTAACCTCATTTTTGGGGCGGTGATAGACCCATCAATAAGTGGACAGGTATGTTCGTATATCTCAATAGGTTATTCCTTCGTTGACTTGATTCTTTGCAGATCTTGACATGTACCGAAGCGAAAAATTATTGACTCCAAGGCTTCTTATTAGATAGTTGAAAGATTGAACAGTTATGTCATAAATTGGGAAACTGATCTTTAATTTAATCAGAGATGAGAAAGAATAAATAGTTGACTAATGGTAAAAAATATACCGTAAGTATCACCTTTTTTGCGAGTTTTATATCTGAACTATCACCAGCTATTTATAAAAACACAAGGTAGGGTAAGGTTGTGTATGCCAATCCTCCCCAGACCCCACTTGTGAGATTGCACCGTGTGTGTTGTCTTTGTATCTAGTTAGGATTAAGGCCCCCCCCACAAACACACACAGAAAAAAAAAAAAAAGAAAAAAAAAGTTTGAGGCTTGTATGTTAGTGTAGGGATAAAATGAGACTTGGAAAACTTGTTTACATCTCTGATTTGTCTCAATGGTGTTGAGGCGTAGAAGATCGATTGAACTCCTGTCGAATTTACGTTTTGCTGCATGGTCAATCTCATCATTATCCATGTGATGCAGGTCAGCATAACGCTGATTGCCACTGGTTTCAAGCGCCAAGAAGAAAGTGATATGAGGCCCCTCCAGGTATTCCTCTCTTCCATCCTATCCCTTCACATCTACATTACATGTGAAAATCTTTGGTTTTGCCGATCATTTGTGATACACATTCCACGGTGTTCAACTAACAGGGAAACCAACTAGCACAGGGAGATGCTTCACTTGGAACTAACAGACGACCTGCGTCCTTTCTGGAAGGTGGTTCAGTGGAAATTCCTGAGTTCCTCAGGAAAAAAGGGCGATTGCGCTATCCAAGAGCTTAAGTTAGTCCTTCATTTTCCTGCATGTATAGTACTTCCCTTTTTCTTCTTGTTCTCCAACATCTCTATCTTTCAAAGTGATACATATGCGTTATACATACAGGATCTTGGTTATGCATCGACTATCAAGTTTATCTCATGGAAAAACCATTGTCCATCTCGTTTTTCTTTATAATAATGTAGAATTGCCTATACATGTTAGTTTGCTAGTGAGTGTAATAAAGCTGGAGATACTATCAAAGGTAGACAATTAGGATCACAATCAGTCTGGTTTCACCTATGATCTGTAAAGTGTTGCTGTAAAGTTGATATCCATTGACGAACTTGTGCACATATATGTGA</genome_strand>
        <mrna_strand>CTCTGCTGGATATCGGTATAGAGAGGGCTACTGGAATTGTGTGGAATATAACTGGTGGTAGTGATCTAACATTATTTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAATGCTGCAGCAGAGGTTATATATGACCTTGTGGATCCAAGTGCTAACCTCATTTTTGGGGCGGTGATAGACCCATCAATAAGTGGACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGCATAACGCTGATTGCCACTGGTTTCAAGCGCCAAGAAGAAAGTGATATGAGGCCCCTCCAG........................................................................................................GGAAACCAACTAGCACAGGGAGATGCTTCACTTGGAACTAACAGACGACCTGCGTCCTTTCTGGAAGGTGGTTCAGTGGAAATTCCTGAGTTCCTCAGGAAAAAAGGGCGATTGCGCTATCCAAGAGCTTAA...............................................................................................GACAGGATCTTGGTTATGCATCGACTATCAAGTTTATCTCATGGAAAAACCATTGTCCATCTCGTTTTTCTTTATAATAATGTAGAATTGCCTATACATGTTAGTTTGTTAGTGAGTGTAATAAAGCTGGAGATACTATCAAAGGTAGACAATTAGGATCACAATCAGTCTGGTTTCACCTATGATCTGTAAAGTGTTGCTGTAAAGTTGATATCCATTGACGAACTTGTGCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E255922" ref_strand="+" ref_description="SGN-E255922 [cLEG-35-N24]">
      <seq>gatcccccgggctgcagggtggaatataactggtggtagtgatctaacattatttgaggtacccgactattttttctcttgctctctctctctcttccgatacacttactaatcatccttagtatgcaccttttgttgactgaaaaaggcagaaatgtattccataacgtagaaaagattttggcagtagaagccttttacttttttcaatgtagagatttttcttattgaagatggcatatatgaatgtgtgaatttccttgtatgatcgtctcttacaaagaaaaataagagagaaactttatctaatggtgcatgagggttgtgaaaagctatgttgcttagactcttcaaaaatgtcgacgggtgcgtgtcagatcctccaaaaatagtgtatttttgaaggatctgacacgggtgcggcaacatttttggagagtccaagcaacttaggtgaaaagatcaaacaacctatgcttctggttcatcctgtttccttatctgctgtttctcagcatttatgtatgccaatgttgtcatttttaaagtgcgcttaagccttgaagcgtggtacaaaacatgttgagcactttgcctcgctttatgcacgcttcagtgtcgtcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="+" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="52744" stop="53952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53028" g_stop="53652" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="625" r_length="625" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="+" ref_id="SGN-E255922" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53028" e_stop="53652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGCTACTGGAATTGTGTGGAATATAACTGGTGGTAGTGATCTAACATTATTTGAGGTACCCGACTATTTTTTCTCTTGCTCTCTCTCTCTCTTCCGATACACTTACTAATCATCCTTAGTATGCACCTTTTGTTGACTGAAAAAGGCAGAAATGTATTCCATAACGTAGAAAAGATTTTGGCAGTAGAAGCCTTTTACTTTTTTCAATGTAGAGATTTTTCTTATTGAAGATGGCATATATGAATGTGTGAATTTCCTTGTATGATCGTCTCTTACAAAGAAAAATAAGAGAGAAACTTTATCTAATGGTGCATGAGGGTTGTGAAAAGCTATGTTGCTTAGACTCTTCAAAAATGTCGACGGGTGCGTGTCAGATCCTCCAAAAATAGTGTATTTTTGAAGGATCTGACACGGGTGCGGCAACATTTTTGGAGAGTCCAAGCAACTTAGGTGAAAAGATCAAACAACCTATGCTTCTGGTTCATCCTGTTTCCTTATCTGCTGTTTCTCAGCATTTATGTATGCCAATGTTGTCATTTTTAAAGTGCGCTTAAGCCTTGAAGCGTGGTACAAAACATGTTGAGCACTTTGCCTCGCTTTATGCACGCTTCAGTGTCGTCAT</genome_strand>
        <mrna_strand>GATCCCCCGGGCTGCAGGGTGGAATATAACTGGTGGTAGTGATCTAACATTATTTGAGGTACCCGACTATTTTTTCTCTTGCTCTCTCTCTCTCTTCCGATACACTTACTAATCATCCTTAGTATGCACCTTTTGTTGACTGAAAAAGGCAGAAATGTATTCCATAACGTAGAAAAGATTTTGGCAGTAGAAGCCTTTTACTTTTTTCAATGTAGAGATTTTTCTTATTGAAGATGGCATATATGAATGTGTGAATTTCCTTGTATGATCGTCTCTTACAAAGAAAAATAAGAGAGAAACTTTATCTAATGGTGCATGAGGGTTGTGAAAAGCTATGTTGCTTAGACTCTTCAAAAATGTCGACGGGTGCGTGTCAGATCCTCCAAAAATAGTGTATTTTTGAAGGATCTGACACGGGTGCGGCAACATTTTTGGAGAGTCCAAGCAACTTAGGTGAAAAGATCAAACAACCTATGCTTCTGGTTCATCCTGTTTCCTTATCTGCTGTTTCTCAGCATTTATGTATGCCAATGTTGTCATTTTTAAAGTGCGCTTAAGCCTTGAAGCGTGGTACAAAACATGTTGAGCACTTTGCCTCGCTTTATGCACGCTTCAGTGTCGTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E264051" ref_strand="+" ref_description="SGN-E264051 [cLEG-64-A13]">
      <seq>tggaatataactggtggtagtgatctaacattatttgaggtacccgactattttttctcttgctctctctctctcttccgatacacttactaatcatccttagtatgcaccttttgttgactgaaaaaggcagaaatgtattccataacgtagaaaagattttggcagtagaagccttttacttttttcaatgtagagatttttcttattgaagatggcatatatgaatgtgtgaatttccttgtatgatcgtctcttacaaagaaaaataagagagaaactttatctaatggtgcatgagggttgtgaaaagctatgttgcttagactcttcaaaaatgtcaccgggtgcgtgtcagatcctccaaaaatagtgtatttttgaaggatctgacacgggtgcggcaacatttttggagagtccaagcaacttaggtgaaaagatcaaacaacctatgcttctggttcatcctgtttccttatctgctgtttctcagcatttatgtatgccaatgttgtcatttttaaagtgcgcttaagccttgaagcgtggtacaaaacatgttgagcactttgcctcgctttatgcacgcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="+" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="52747" stop="53941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53047" g_stop="53641" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="595" r_length="595" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="+" ref_id="SGN-E264051" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53047" e_stop="53641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAATATAACTGGTGGTAGTGATCTAACATTATTTGAGGTACCCGACTATTTTTTCTCTTGCTCTCTCTCTCTCTTCCGATACACTTACTAATCATCCTTAGTATGCACCTTTTGTTGACTGAAAAAGGCAGAAATGTATTCCATAACGTAGAAAAGATTTTGGCAGTAGAAGCCTTTTACTTTTTTCAATGTAGAGATTTTTCTTATTGAAGATGGCATATATGAATGTGTGAATTTCCTTGTATGATCGTCTCTTACAAAGAAAAATAAGAGAGAAACTTTATCTAATGGTGCATGAGGGTTGTGAAAAGCTATGTTGCTTAGACTCTTCAAAAATGTCGACGGGTGCGTGTCAGATCCTCCAAAAATAGTGTATTTTTGAAGGATCTGACACGGGTGCGGCAACATTTTTGGAGAGTCCAAGCAACTTAGGTGAAAAGATCAAACAACCTATGCTTCTGGTTCATCCTGTTTCCTTATCTGCTGTTTCTCAGCATTTATGTATGCCAATGTTGTCATTTTTAAAGTGCGCTTAAGCCTTGAAGCGTGGTACAAAACATGTTGAGCACTTTGCCTCGCTTTATGCACGCTTC</genome_strand>
        <mrna_strand>TGGAATATAACTGGTGGTAGTGATCTAACATTATTTGAGGTACCCGACTATTTTTTCTCTTGCTCTCTCTCTCTCTTCCGATACACTTACTAATCATCCTTAGTATGCACCTTTTGTTGACTGAAAAAGGCAGAAATGTATTCCATAACGTAGAAAAGATTTTGGCAGTAGAAGCCTTTTACTTTTTTCAATGTAGAGATTTTTCTTATTGAAGATGGCATATATGAATGTGTGAATTTCCTTGTATGATCGTCTCTTACAAAGAAAAATAAGAGAGAAACTTTATCTAATGGTGCATGAGGGTTGTGAAAAGCTATGTTGCTTAGACTCTTCAAAAATGTCACCGGGTGCGTGTCAGATCCTCCAAAAATAGTGTATTTTTGAAGGATCTGACACGGGTGCGGCAACATTTTTGGAGAGTCCAAGCAACTTAGGTGAAAAGATCAAACAACCTATGCTTCTGGTTCATCCTGTTTCCTTATCTGCTGTTTCTCAGCATTTATGTATGCCAATGTTGTCATTTTTAAAGTGCGCTTAAGCCTTGAAGCGTGGTACAAAACATGTTGAGCACTTTGCCTCGCTTTATGCACGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366159" ref_strand="+" ref_description="SGN-E366159 [cLPT-1-A15](-)">
      <seq>atttttggggcggtgatagacccatcgataagtggacaggtcagcataacgctgattgccactggtttcaagcgccaagaagaaagtgatatgaggcccctccagggaaaccaactagcacagggagatgcttcacttggaactaacagacgacctgcgtcctttgtggaaggtggttcagtggaaattcctgagttcctcaggaaaaaagggcgattgcgctatccaagagcttaagttagtccttcattttcctgcatgtatagtacttccctttttcttcttgttctccaacatctctatctttcaaagtgatacatatgcgttatacatacaggatcttggttatgcatcgagtccatttcgtttttctttataataatgtagaattgcctatacatgttagtttgctagtgagtgtaataagctggagatactatcaaaggtagacaattaggagcacaatcagtctggtttcacctatgatctgtaaagtgttgctgtaaagttgatatccgttgacgaacttgtgcacatatatgtgatttaggttcagttttgaacttgttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="+" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="54563" stop="56441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54863" g_stop="54901" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54902" i_stop="55474" i_length="573">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55475" g_stop="55540" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="105" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55541" i_stop="55644" i_length="104">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55645" g_stop="56148" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="578" r_length="473" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="+" ref_id="SGN-E366159" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.054" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54863" e_stop="54901"/>
          <exon e_start="55475" e_stop="55540"/>
          <exon e_start="55645" e_stop="56148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTGGGGCGGTGATAGACCCATCAATAAGTGGACAGGTATGTTCGTATATCTCAATAGGTTATTCCTTCGTTGACTTGATTCTTTGCAGATCTTGACATGTACCGAAGCGAAAAATTATTGACTCCAAGGCTTCTTATTAGATAGTTGAAAGATTGAACAGTTATGTCATAAATTGGGAAACTGATCTTTAATTTAATCAGAGATGAGAAAGAATAAATAGTTGACTAATGGTAAAAAATATACCGTAAGTATCACCTTTTTTGCGAGTTTTATATCTGAACTATCACCAGCTATTTATAAAAACACAAGGTAGGGTAAGGTTGTGTATGCCAATCCTCCCCAGACCCCACTTGTGAGATTGCACCGTGTGTGTTGTCTTTGTATCTAGTTAGGATTAAGGCCCCCCCCACAAACACACACAGAAAAAAAAAAAAAAGAAAAAAAAAGTTTGAGGCTTGTATGTTAGTGTAGGGATAAAATGAGACTTGGAAAACTTGTTTACATCTCTGATTTGTCTCAATGGTGTTGAGGCGTAGAAGATCGATTGAACTCCTGTCGAATTTACGTTTTGCTGCATGGTCAATCTCATCATTATCCATGTGATGCAGGTCAGCATAACGCTGATTGCCACTGGTTTCAAGCGCCAAGAAGAAAGTGATATGAGGCCCCTCCAGGTATTCCTCTCTTCCATCCTATCCCTTCACATCTACATTACATGTGAAAATCTTTGGTTTTGCCGATCATTTGTGATACACATTCCACGGTGTTCAACTAACAGGGAAACCAACTAGCACAGGGAGATGCTTCACTTGGAACTAACAGACGACCTGCGTCCTTTCTGGAAGGTGGTTCAGTGGAAATTCCTGAGTTCCTCAGGAAAAAAGGGCGATTGCGCTATCCAAGAGCTTAAGTTAGTCCTTCATTTTCCTGCATGTATAGTACTTCCCTTTTTCTTCTTGTTCTCCAACATCTCTATCTTTCAAAGTGATACATATGCGTTATACATACAGGATCTTGGTTATGCATCGACTATCAAGTTTATCTCATGGAAAAACCATTGTCCATCTCGTTTTTCTTTATAATAATGTAGAATTGCCTATACATGTTAGTTTGCTAGTGAGTGTAATAAAGCTGGAGATACTATCAAAGGTAGACAATTAGGATCACAATCAGTCTGGTTTCACCTATGATCTGTAAAGTGTTGCTGTAAAGTTGATATCCATTGACGAACTTGTGCACATATATGTGATTTAGGTTCAGTTTTGAACTTGTTCATCAGCTT</genome_strand>
        <mrna_strand>ATTTTTGGGGCGGTGATAGACCCATCGATAAGTGGACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGCATAACGCTGATTGCCACTGGTTTCAAGCGCCAAGAAGAAAGTGATATGAGGCCCCTCCAG........................................................................................................GGAAACCAACTAGCACAGGGAGATGCTTCACTTGGAACTAACAGACGACCTGCGTCCTTTGTGGAAGGTGGTTCAGTGGAAATTCCTGAGTTCCTCAGGAAAAAAGGGCGATTGCGCTATCCAAGAGCTTAAGTTAGTCCTTCATTTTCCTGCATGTATAGTACTTCCCTTTTTCTTCTTGTTCTCCAACATCTCTATCTTTCAAAGTGATACATATGCGTTATACATACAGGATCTTGGTTATGCATCG-------AG---------T-------CCA---T---T-TCGTTTTTCTTTATAATAATGTAGAATTGCCTATACATGTTAGTTTGCTAGTGAGTGTAAT-AAGCTGGAGATACTATCAAAGGTAGACAATTAGGAGCACAATCAGTCTGGTTTCACCTATGATCTGTAAAGTGTTGCTGTAAAGTTGATATCCGTTGACGAACTTGTGCACATATATGTGATTTAGGTTCAGTTTTGAACTTGTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281962" ref_strand="+" ref_description="SGN-E281962 [cLES-2-A6]">
      <seq>tcttacactatagttttagagacaccaaaataaaaccatcatttctcccttcaacaacactccctcttggctagctccaatactatagtttgtggagactagccaaaccacacacacaaaaaaatcttccttctacaatttgcttcaaattcattcaatatcaacaataacaaattcaacgacacgttcattatgacgaacgaacgtgaaaatccatcatttttttctatacatccctcaagacgccccgaccctaacaatgacaaggccgaatcaacaaggcctaataatttactagtcaagaaaaataacgtcacgattaaacgtgatcaagaaaaattcaacaatacagaaattacgtcagacatgatcaacgtgcacgtgggacatgttggcgcgcataacgagggcggaccgatgaggacagatgatagtggacgtgaaagattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="+" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="60595" stop="61645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60895" g_stop="61345" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="+" ref_id="SGN-E281962" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60895" e_stop="61345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTACACTATAGTTTTAGAGACACCAAAATAAAACCATCATTTCTCCCTTCAACAACACTCCCTCTTGGCTAGCTCCAATACTATAGTTTGTGGAGACTAGCCAAACCACACACACAAAAAAATCTTCCTTCTACAATTTGCTTCAAATTCATTCAATATCAACAATAACAAATTCAACGACACGTTCATTATGACGAACGAACGTGAAAATCCATCATTTTTTTCTATACATCCCTCAAGACGCCCCGACCCTAACAATGACAAGGCCGAATCAACAAGGCCTAATAATTTACTAGTCAAGAAAAATAACGTCACGATTAAACGTGATCAAGAAAAATTCAACAATACAGAAATTACGTCAGACATGATCAACGTGCACGTGGGACATGTTGGCGCGCATAACGAGGGCGGACCGATGAGGACAGATGATAGTGGACGTGAAAGATTGA</genome_strand>
        <mrna_strand>TCTTACACTATAGTTTTAGAGACACCAAAATAAAACCATCATTTCTCCCTTCAACAACACTCCCTCTTGGCTAGCTCCAATACTATAGTTTGTGGAGACTAGCCAAACCACACACACAAAAAAATCTTCCTTCTACAATTTGCTTCAAATTCATTCAATATCAACAATAACAAATTCAACGACACGTTCATTATGACGAACGAACGTGAAAATCCATCATTTTTTTCTATACATCCCTCAAGACGCCCCGACCCTAACAATGACAAGGCCGAATCAACAAGGCCTAATAATTTACTAGTCAAGAAAAATAACGTCACGATTAAACGTGATCAAGAAAAATTCAACAATACAGAAATTACGTCAGACATGATCAACGTGCACGTGGGACATGTTGGCGCGCATAACGAGGGCGGACCGATGAGGACAGATGATAGTGGACGTGAAAGATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732176" ref_strand="+" ref_description="SGN-E732176 [LB01BH09]">
      <seq>ttctcccttcaacaacactccctcttggctagctccaatactatagtttgtggagactagccaaaccacacacacaaaaaaatcttccttctacaatttgcttcaaattcattcaatatcaacaataacaaattcaacgacacgttcattatgacgaacgaacgtgaaaatccatcatttttttctatacatccctcaagacgccccgaccctaacaatgacaaggccgaatcaacaaggcctaataatttactagtcaagaaaaataacgtcacgattaaacgtgatcaagaaaaattcaacaatacagaaattacgtcagacatgatcaacgtgcacgtgggacatgttggcgcgcataacgagggcggaccgatgaggacagatgatagtggacgtgaaagattgaagagacatagaattgaagtggcaggacatgtatggataccagaaatttggggacaagaagaattactcaaagattggattgattgtagtgcatttgattcaaaattgaataataataataatataatgtcagctagggctgctttggttgaagaaagaagaagaaataattcatcttgcagattgagaattgaaaatagctattgaaattatgcaccaaaaaaaaaaaaaaaaaggagtttaaattttaatttaattttttgggtttttttcctcctccccttaaatggaacggttttataattttaatcaaaaaaatggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="+" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="60637" stop="61967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60937" g_stop="61668" g_length="732"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="732" r_length="732" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="+" ref_id="SGN-E732176" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60937" e_stop="61668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCCTTCAACAACACTCCCTCTTGGCTAGCTCCAATACTATAGTTTGTGGAGACTAGCCAAACCACACACACAAAAAAATCTTCCTTCTACAATTTGCTTCAAATTCATTCAATATCAACAATAACAAATTCAACGACACGTTCATTATGACGAACGAACGTGAAAATCCATCATTTTTTTCTATACATCCCTCAAGACGCCCCGACCCTAACAATGACAAGGCCGAATCAACAAGGCCTAATAATTTACTAGTCAAGAAAAATAACGTCACGATTAAACGTGATCAAGAAAAATTCAACAATACAGAAATTACGTCAGACATGATCAACGTGCACGTGGGACATGTTGGCGCGCATAACGAGGGCGGACCGATGAGGACAGATGATAGTGGACGTGAAAGATTGAAGAGACATAGAATTGAAGTGGCAGGACATGTATGGATACCAGAAATTTGGGGACAAGAAGAATTACTCAAAGATTGGATTGATTGTAGTGCATTTGATTCAAAATTGAATAATAATAATAATATAATGTCAGCTAGGGCTGCTTTGGTTGAAGAAAGAAGAAGAAATAATTCATCTTGCAGATTGAGAATTGAAAATAGCTATTGAAATTATGCACCAAAAAAAAAAAAAAAGATGAGTTTTAATTTTTATTTTATTTTTTTGGTTTTTTTTCTTCTTCTCTTTAATTGAACTGTTTTATTATTTTTATCATAATAATTGTGT</genome_strand>
        <mrna_strand>TTCTCCCTTCAACAACACTCCCTCTTGGCTAGCTCCAATACTATAGTTTGTGGAGACTAGCCAAACCACACACACAAAAAAATCTTCCTTCTACAATTTGCTTCAAATTCATTCAATATCAACAATAACAAATTCAACGACACGTTCATTATGACGAACGAACGTGAAAATCCATCATTTTTTTCTATACATCCCTCAAGACGCCCCGACCCTAACAATGACAAGGCCGAATCAACAAGGCCTAATAATTTACTAGTCAAGAAAAATAACGTCACGATTAAACGTGATCAAGAAAAATTCAACAATACAGAAATTACGTCAGACATGATCAACGTGCACGTGGGACATGTTGGCGCGCATAACGAGGGCGGACCGATGAGGACAGATGATAGTGGACGTGAAAGATTGAAGAGACATAGAATTGAAGTGGCAGGACATGTATGGATACCAGAAATTTGGGGACAAGAAGAATTACTCAAAGATTGGATTGATTGTAGTGCATTTGATTCAAAATTGAATAATAATAATAATATAATGTCAGCTAGGGCTGCTTTGGTTGAAGAAAGAAGAAGAAATAATTCATCTTGCAGATTGAGAATTGAAAATAGCTATTGAAATTATGCACCAAAAAAAAAAAAAAAAAGGAGTTTAAATTTTAATTTAATTTTTTGGGTTTTTTTCCTCCTCCCCTTAAATGGAACGGTTTTATAATTTTAATCAAAAAAATGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326369" ref_strand="+" ref_description="SGN-E326369 [cTOC-14-C3]">
      <seq>ttctcccttcaacaacactccctcttggctagctccaatactataggttgtggagactagccaaaccacacacacaaaaaaatcttccttctacaatttgcttcaaattcattcaatatcaacaataacaaattcaacgacacgttcattatgacgaacgaacgtgaaaatccatcatttttttctatacatccctcaagacgccccgaccctaacaatgacaaggccgaatcaacaaggcctaataatttactagtcaagaaaaataacgtcacgattaaacgtgatcaagaaaaattcaacaatacagaaattacgtcagacatgatcaacgtgcacgtgggacatgttggcgcgcataacgagggcggaccgatgaggacagatgatagtggacgtgaaagattgaagagacatagaattgaagtggcaggacatgtatggataccagaaatttggggacaagaagaattactcaaagattggattgattgtagtgcatttgattcaaaattgaataataataataatataatgtcagctanggctgcttttgttgaagaaagaagaagaaatnattcatcttgcagattgagaattgaaaatagctattgaaattatgcacccaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="+" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="60637" stop="61875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60937" g_stop="61575" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="+" ref_id="SGN-E326369" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60937" e_stop="61575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCCTTCAACAACACTCCCTCTTGGCTAGCTCCAATACTATAGTTTGTGGAGACTAGCCAAACCACACACACAAAAAAATCTTCCTTCTACAATTTGCTTCAAATTCATTCAATATCAACAATAACAAATTCAACGACACGTTCATTATGACGAACGAACGTGAAAATCCATCATTTTTTTCTATACATCCCTCAAGACGCCCCGACCCTAACAATGACAAGGCCGAATCAACAAGGCCTAATAATTTACTAGTCAAGAAAAATAACGTCACGATTAAACGTGATCAAGAAAAATTCAACAATACAGAAATTACGTCAGACATGATCAACGTGCACGTGGGACATGTTGGCGCGCATAACGAGGGCGGACCGATGAGGACAGATGATAGTGGACGTGAAAGATTGAAGAGACATAGAATTGAAGTGGCAGGACATGTATGGATACCAGAAATTTGGGGACAAGAAGAATTACTCAAAGATTGGATTGATTGTAGTGCATTTGATTCAAAATTGAATAATAATAATAATATAATGTCAGCTAGGGCTGCTTTGGTTGAAGAAAGAAGAAGAAATAATTCATCTTGCAGATTGAGAATTGAAAATAGCTATTGAAATTATGCACCAAAAAAAAAAAAA</genome_strand>
        <mrna_strand>TTCTCCCTTCAACAACACTCCCTCTTGGCTAGCTCCAATACTATAGGTTGTGGAGACTAGCCAAACCACACACACAAAAAAATCTTCCTTCTACAATTTGCTTCAAATTCATTCAATATCAACAATAACAAATTCAACGACACGTTCATTATGACGAACGAACGTGAAAATCCATCATTTTTTTCTATACATCCCTCAAGACGCCCCGACCCTAACAATGACAAGGCCGAATCAACAAGGCCTAATAATTTACTAGTCAAGAAAAATAACGTCACGATTAAACGTGATCAAGAAAAATTCAACAATACAGAAATTACGTCAGACATGATCAACGTGCACGTGGGACATGTTGGCGCGCATAACGAGGGCGGACCGATGAGGACAGATGATAGTGGACGTGAAAGATTGAAGAGACATAGAATTGAAGTGGCAGGACATGTATGGATACCAGAAATTTGGGGACAAGAAGAATTACTCAAAGATTGGATTGATTGTAGTGCATTTGATTCAAAATTGAATAATAATAATAATATAATGTCAGCTANGGCTGCTTTTGTTGAAGAAAGAAGAAGAAATNATTCATCTTGCAGATTGAGAATTGAAAATAGCTATTGAAATTATGCACCCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E719084" ref_strand="+" ref_description="SGN-E719084 [FC06CG11]">
      <seq>aatcggccgaattgccctcttggctagctccaatactatagtttgtggagactagccaaaccacacacacaaaaaaatcttccttctacaatttgcttcaaattcattcaatatcaacaataacaaattcaacgacacgttcattatgacgaacgaacgtgaaaatccatcatttttttctatacatccctcaagacgccccgaccctaacaatgacaaggccgaatcaacaaggcctaataatttactagtcaagaaaaataacgtcacgattaaacgtgatcaagaaaaattcaacaatacagaaattacgtcagacatgatcaacgtgcacgtgggacatgttggcgcgcataacgagggcggaccgatgaggacagatgatagtggacgtgaaagattgaagagacatagaattgaagtggcaggacatgtatggataccagaaatttggggacaagaagaattactcaaagattggattgattgtagtgcatttgattcaaaattgaataataataataatataatgtcagctagggctgctttggttgaagaaagaagaagaaataattcatcttgcagattgagaattgaaaatagctattgaaattatgcaccaaaaaaaaaaaaaaaaagaagtttaaattttaatttaattttttgggtttttttcctcctccccttaaatggaacggtttaataatttttaccaaaaaaatggggggttcccgggttnnnaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="+" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="60649" stop="89395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60955" g_stop="61694" g_length="740"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="753" r_length="740" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61695" i_stop="63436" i_length="1742">
            <donor d_prob="0.000" d_score="0.64"/>
            <acceptor a_prob="0.154" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63437" g_stop="63451" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="754" r_stop="768" r_length="15" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="+" ref_id="SGN-E719084" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60955" e_stop="61694"/>
          <exon e_start="63437" e_stop="63451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTCTTGGCTAGCTCCAATACTATAGTTTGTGGAGACTAGCCAAACCACACACACAAAAAAATCTTCCTTCTACAATTTGCTTCAAATTCATTCAATATCAACAATAACAAATTCAACGACACGTTCATTATGACGAACGAACGTGAAAATCCATCATTTTTTTCTATACATCCCTCAAGACGCCCCGACCCTAACAATGACAAGGCCGAATCAACAAGGCCTAATAATTTACTAGTCAAGAAAAATAACGTCACGATTAAACGTGATCAAGAAAAATTCAACAATACAGAAATTACGTCAGACATGATCAACGTGCACGTGGGACATGTTGGCGCGCATAACGAGGGCGGACCGATGAGGACAGATGATAGTGGACGTGAAAGATTGAAGAGACATAGAATTGAAGTGGCAGGACATGTATGGATACCAGAAATTTGGGGACAAGAAGAATTACTCAAAGATTGGATTGATTGTAGTGCATTTGATTCAAAATTGAATAATAATAATAATATAATGTCAGCTAGGGCTGCTTTGGTTGAAGAAAGAAGAAGAAATAATTCATCTTGCAGATTGAGAATTGAAAATAGCTATTGAAATTATGCACCAAAAAAAAAAAAAAAGATGAGTTTTAATTTTTATTTTATTTTTTTGGTTTTTTTTCTTCTTCTCTTTAATTGAACTGTTTTATTATTTTTATCATAATAATTGTGTGTTTCCATGTTAATACATTGAAGAAATACATATGTTTATGGTTGGGATGATAGCACTTATGGTCCCTCGATTATACGTAAATTCTTATTTCGATTTAGGTAGAAATATGTTGTTTTTTGAATTGTTACTTTTGGAATTTTATTACCGTCGAATATGAAATAATAGTATAAAATTAACAATGTTAAAATTAGTAATTATGGTTAATTTGTGGATATCTATGAGGAAATGATAAAAGTATGTAATTTTTATTAATTGAAAGTTTAATATACTTAATTGGGTATTAGCACGACTAAAATTAAAACTTATCGATAGTATTAGTATATATACATATATATTCCTTTTTTCTAAAAAAAATAAAAATTGGGGATTGGGGGTTCCGCGATAATGATAAATTTACGATTAGCCACTTTCCGCTCATGTAATTAAAATATAATTTTTATTTGTTACATTTGAAATTTTATAACTATGATTATTTTTCAAAAATAATGTCGAAAAATGATGAGAAAACTCTATTCTTACTCAATATAAGGATCTATTTTATTGTATGTAAAAATTCATATGAAATCGCCTTTTCAATTCCTATAATTGAAAAATAGTTACTATCATGAAAATAATTCCTTGATATTGCTATTGAATTGGACTTATAAAATGTGAAATAAAATAATAACCATTTTTCCTATTATAAAGTTGAAAAGTGACTAGTCCACACTATTGCAACCTTATATATTTATAACTTAATTGAAAGATTATAACTTATTCAATTTTTGATTAAAAATCACATCGATATATTAATAAACGTCTTCTTTTTTTTTTCACATGTACCCTAATTTTTCCAAAGGAAGGAAAATGATTTTTTTTTTCTTTTTCAAAGTCAAAACAAGGAAAAAAAAATAGGGATTGGAGTTAACCTTTGGAAAATTATATATTACGTAGATATGTCAAATCTTTTTCTATACATATACTATATGTTGAATTTCTTGAATTTGTCGCAAATTCAAAGTATTTTATTTTCAAAAATAAAACTTTTCGATATGAATTTGAAATCGGCTCAAAACTAGGTGCAAACGCCCATGGAAAGCCAAAATAAGAAGGTAAGAAAAAGCCATAACAGATTTTCAACATGTAACATAGATCACATAATGTGGGGTGGGATGGGGGTGGGGGTGGGGGTGGGGGTGGGGCGGTTGAGAGATGCATCCATCAATGCTTAAGTCCAACTTGTTATACAACATGCATGCATAAGAATATATCATACAGTAATAATGAACCCACCAAAAAAAAGATGGTCCCAGCTTTAATAAGTTCTTTACAAATTTGCAATTTATTCTTTTTAGTTTAATGGTAAAAACCACATTGAACTATCTGATTTTTTGCGAGTTTCACACTTTAATTATTGGTCGTTTTCTAGTGAATTATCACCATATTTTGTATTAAAACACATTTAATTATCAGTTATCAGCTGACAGCTATGATTCAACTTTGAGTGTACATAAGTAGACATTTAAATTTATATAAAATTGAACAAAAAACACATTCGTCCTACATGACACCCTACATGGCAATTTTGTATTTTACGTGGCGTCTTACATGTATTATGTCATGTAGGACACGTGTGTCTACGTACTTGTTCAATTATATACAAGTTTAATGTCTACTTGTGCACACTCAAAGTTGGAAGACATAGTTAACAGTTGAAGCCAAGTTAAGAGTCATGTTTATGTATTATGCATTCATTTTTTTACATGAACTATCACCATCATTTTAGTAGAAAAAGAAACAACAA</genome_strand>
        <mrna_strand>GCCCTCTTGGCTAGCTCCAATACTATAGTTTGTGGAGACTAGCCAAACCACACACACAAAAAAATCTTCCTTCTACAATTTGCTTCAAATTCATTCAATATCAACAATAACAAATTCAACGACACGTTCATTATGACGAACGAACGTGAAAATCCATCATTTTTTTCTATACATCCCTCAAGACGCCCCGACCCTAACAATGACAAGGCCGAATCAACAAGGCCTAATAATTTACTAGTCAAGAAAAATAACGTCACGATTAAACGTGATCAAGAAAAATTCAACAATACAGAAATTACGTCAGACATGATCAACGTGCACGTGGGACATGTTGGCGCGCATAACGAGGGCGGACCGATGAGGACAGATGATAGTGGACGTGAAAGATTGAAGAGACATAGAATTGAAGTGGCAGGACATGTATGGATACCAGAAATTTGGGGACAAGAAGAATTACTCAAAGATTGGATTGATTGTAGTGCATTTGATTCAAAATTGAATAATAATAATAATATAATGTCAGCTAGGGCTGCTTTGGTTGAAGAAAGAAGAAGAAATAATTCATCTTGCAGATTGAGAATTGAAAATAGCTATTGAAATTATGCACCAAAAAAAAAAAAAAAAAGAAGTTTAAATTTTAATTTAATTTTTTGGGTTTTTTTCCTCCTCCCCTTAAATGGAACGGTTTAATAATTTTTACCAAAAAAATGGGGGGTTCCCGGGTTNNNAAAAAAAAAAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E286320" ref_strand="+" ref_description="SGN-E286320 [cLES-11-I11]">
      <seq>aaatcttccttctacaatttgcttcaaattcattcaatatcaacaataacaaattcaacgacacgttcattatgacgaacgaacgtgaaaatccatcatttttttctatacatccctcaagacgccccgaccctaacaatgacaaggccgaatcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="+" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="60716" stop="61472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61016" g_stop="61172" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="+" ref_id="SGN-E286320" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>157</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61016" e_stop="61172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTTCCTTCTACAATTTGCTTCAAATTCATTCAATATCAACAATAACAAATTCAACGACACGTTCATTATGACGAACGAACGTGAAAATCCATCATTTTTTTCTATACATCCCTCAAGACGCCCCGACCCTAACAATGACAAGGCCGAATCAAC</genome_strand>
        <mrna_strand>AAATCTTCCTTCTACAATTTGCTTCAAATTCATTCAATATCAACAATAACAAATTCAACGACACGTTCATTATGACGAACGAACGTGAAAATCCATCATTTTTTTCTATACATCCCTCAAGACGCCCCGACCCTAACAATGACAAGGCCGAATCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E703480" ref_strand="+" ref_description="SGN-E703480 [FA21CE05]">
      <seq>gctgtttcacataacgagcgacttgaagttgatcgcatcccagcccttgtagaattgtgcattcaggctggtgtggacttacctgagtacccaacccgaagaaggaagttccccatttaccgggttgctggaaaactcatagattttgagaagaggtttcccaaggatgatttgttcgggaaggacgtagaaacttttaggtctagggaaactattaagaagcacatcggagatggaaattatttgaatttaccctacgatgacataaaaggattcgctatgcgaggaatggaagcttgggagactatgcgtactggagccatacagctcatgaaaacttatggcgttcaaacatgtggatattgtcctgagttgcaagtcgggccaaaggggcatagggttaggcaatgtcaagccttcaagcaccagatgagggatggacaacatgcttggcaagaggcaacaatagatgatcttctctccactgtatatgtttggcatgtccaaaacccgcatgctggtgacgttttggttgattctatgaaaaggtattacggaaagttacctgcagtcgttgaactgtttagtcaagttggagcacaggtcggagatgattactatcacatgatgagagatgatgttgtagttcctggacgagatgaagaaaagttagttgtataaagctctgaaatgctgccaacatattggcagagtagaatcaacattagaccgaagacattgtttgcttggtttgatttctgctagtgaggataaacccaagactgtatcgttgccagagctcgtttgttgttagggtaaatctatgcagtttctggcaattgaaacttcaacttcatgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="+" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="76286" stop="78052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76586" g_stop="76856" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76857" i_stop="77162" i_length="306">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77163" g_stop="77752" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="861" r_length="590" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="+" ref_id="SGN-E703480" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>861</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76586" e_stop="76856"/>
          <exon e_start="77163" e_stop="77752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTTTCACATAACGAGCGACTTGAAGTTGATCGCATCCCAGCCCTTGTAGAATTGTGCATTCAGGCTGGTGTGGACTTACCTGAGTACCCAACCCGAAGAAGGAAGTTCCCCATTTACCGGGTTGCTGGAAAACTCATAGATTTTGAGAAGAGGTTTCCCAAGGATGATTTGTTCGGGAAGGACGTAGAAACTTTTAGGTCTAGGGAAACTATTAAGAAGCACATCGGAGATGGAAATTATTTGAATTTACCCTACGATGACATAAAAGGTTTGTCTTTATGTTACTACAATGTTTTCACTTATAATTATTAGTCATTTTTCAATGTGCATTTTCCTATTAAAATACATCAATTTCCTCTCTAGAGCTTCAAGCTATGTTGCTCAGAGTTTCCAAAATTGTTGCCGCACCTGTGTCGACCTCTCCAAAATGCACTACTTTTACAGTATCCGACACGGACCCGTCGACATTTTTGAAGAGTCTAAGCATCATAGACTTAAAAGTATGTTAAAGAATTATTACTTATGGTATGACGAAATTTCTAGTTTGATTTTCTACTACTTATCACTTCTCCAGGATTCGCTATGCGAGGAATGGAAGCTTGGGAGACTATGCGTACTGGAGCCATACAGCTCATGAAAACTTATGGCGTTCAAACATGTGGATATTGTCCTGAGTTGCAAGTCGGGCCAAAGGGGCATAGGGTTAGGCAATGTCAAGCCTTCAAGCACCAGATGAGGGATGGACAACATGCTTGGCAAGAGGCAACAATAGATGATCTTCTCTCCACTGTATATGTTTGGCATGTCCAAAACCCGCATGCTGGTGACGTTTTGGTTGATTCTATGAAAAGGTATTATGGAAAGTTACCTGCAGTCGTTGAACTGTTTAGTCAAGTTGGAGCACAGGTCGGAGATGATTACTATCACATGATGAGAGATGATGTTGTAGTTCCTGGACGAGATGAAGAAAAGTTAGTTGTATAAAGCTCTGAAATGCTGCCAACATATTGGCAGAGTAGAATCAACATTAGACCGAAGACATTGTTTGCTTGGTTTGATTTCTGCTAGTGAGGATAAACCCAAGACTGTATCGTTGCCAGAGCTCGTTTGTTGTTAGGGTAAATCTATGCAGTTTCTGGCAATTGAAACTTCAACTTCATGTTG</genome_strand>
        <mrna_strand>GCTGTTTCACATAACGAGCGACTTGAAGTTGATCGCATCCCAGCCCTTGTAGAATTGTGCATTCAGGCTGGTGTGGACTTACCTGAGTACCCAACCCGAAGAAGGAAGTTCCCCATTTACCGGGTTGCTGGAAAACTCATAGATTTTGAGAAGAGGTTTCCCAAGGATGATTTGTTCGGGAAGGACGTAGAAACTTTTAGGTCTAGGGAAACTATTAAGAAGCACATCGGAGATGGAAATTATTTGAATTTACCCTACGATGACATAAAAG..................................................................................................................................................................................................................................................................................................................GATTCGCTATGCGAGGAATGGAAGCTTGGGAGACTATGCGTACTGGAGCCATACAGCTCATGAAAACTTATGGCGTTCAAACATGTGGATATTGTCCTGAGTTGCAAGTCGGGCCAAAGGGGCATAGGGTTAGGCAATGTCAAGCCTTCAAGCACCAGATGAGGGATGGACAACATGCTTGGCAAGAGGCAACAATAGATGATCTTCTCTCCACTGTATATGTTTGGCATGTCCAAAACCCGCATGCTGGTGACGTTTTGGTTGATTCTATGAAAAGGTATTACGGAAAGTTACCTGCAGTCGTTGAACTGTTTAGTCAAGTTGGAGCACAGGTCGGAGATGATTACTATCACATGATGAGAGATGATGTTGTAGTTCCTGGACGAGATGAAGAAAAGTTAGTTGTATAAAGCTCTGAAATGCTGCCAACATATTGGCAGAGTAGAATCAACATTAGACCGAAGACATTGTTTGCTTGGTTTGATTTCTGCTAGTGAGGATAAACCCAAGACTGTATCGTTGCCAGAGCTCGTTTGTTGTTAGGGTAAATCTATGCAGTTTCTGGCAATTGAAACTTCAACTTCATGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E358850" ref_strand="+" ref_description="SGN-E358850 [cLHT-24-L20]">
      <seq>agactagtctcgagtttttttttttttttggttttttttttaaatgctcatattttcacaaatcatttcttctaacattcattatttacagagatgtcacactttaagggatgaatatatatcccttacagggggatcttctgcaactaaactcagatgaagaaacatcatatttaaaccaatcaaacagccatgaaaaatgtcaaacaattacaacattgtaaataaggcagaaacttcaaagagctgttttaaaatctaaaataggtataaaattagatctttgaggcaaaactgatgccctcctgtgccaattgatccaaggtagcagggggttgaacctttgcaaccttagcaattgccttattctcttcaggtgacccactctcgaggaatgcaccaacgatctttccatctttgatccagtattgtccaaacttgtgagttgcagagttgggatcagcgtccccaaagagcactgtttcacccacattatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="+" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="61277" stop="78700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77613" g_stop="77651" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.590"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77652" i_stop="77934" i_length="283">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77935" g_stop="78400" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="499" r_length="463" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="+" ref_id="SGN-E358850" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77613" e_stop="77651"/>
          <exon e_start="77935" e_stop="78400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTAGACCGAAGACATTGTTTGCTTGGTTTGATTTCTGCTAGTGAGGATAAACCCAAGACTGTATCGTTGCCAGAGCTCGTTTGTTGTTAGGGTAAATCTATGCAGTTTCTGGCAATTGAAACTTCAACTTCATGTTGAGATACAACCAACTTTTCTTGCCTTTAAAATTAGGACAATGTATAGAAGGTACTATTATTAGGAAAAGTAACAATAGTTTCATATCGACCTTTAAGATGTTTTAAATGCATGTCATTGTGCATCTATAAAAGCATGTCATTAAGGATAAAATGTGCATAACCAAAGTGTGCGCTAATCCAAGTAAATAGATGCTCATATTTTCACAAACCACATTGCTTCTAACATTCATTATTTACAGAGATGTCACACTTTAAGGTATGAATATATATGCCTTACAGGGTGATCTTCTGCAACTAAACTCAGATGAAGAAACATCATATTTAAACCAATCAAACAGCCATGAAAAATGTCAAACAATTACAACATTGTAAATAAGGCAGAAACTTCAAAGAGCTGTTTTAAAATCCAAAGTAGGTATAAAAATTAGATCTTTGAGGCAAAACTGATGCCCTCCTGTGCCAATTGATCCAAGGTAGCAGGGGGTTGAACCTTTGCAACCTTAGCAATTGCCTTGTTCTCTTCAGGTGACCCACTCTCGAGGAATGCACCAACGATCTTTCCATCTTTGATCCAGTATTGTCCAAACTTGTGAGTTGCAGAGTTGGGATCAGCGTCCCCAAAGAGCACTGTTTCACCCACATTATCAC</genome_strand>
        <mrna_strand>AGACTAG-TC-TCGAGTTTTTTT-TTTTTTTTGGTTTTT...........................................................................................................................................................................................................................................................................................TTTTTAAATGCTCATATTTTCACAAA--TCATTTCTTCTAACATTCATTATTTACAGAGATGTCACACTTTAAGGGATGAATATATATCCCTTACAGGGGGATCTTCTGCAACTAAACTCAGATGAAGAAACATCATATTTAAACCAATCAAACAGCCATGAAAAATGTCAAACAATTACAACATTGTAAATAAGGCAGAAACTTCAAAGAGCTGTTTTAAAATCTAAAATAGGTAT-AAAATTAGATCTTTGAGGCAAAACTGATGCCCTCCTGTGCCAATTGATCCAAGGTAGCAGGGGGTTGAACCTTTGCAACCTTAGCAATTGCCTTATTCTCTTCAGGTGACCCACTCTCGAGGAATGCACCAACGATCTTTCCATCTTTGATCCAGTATTGTCCAAACTTGTGAGTTGCAGAGTTGGGATCAGCGTCCCCAAAGAGCACTGTTTCACCCACATTATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E223284" ref_strand="+" ref_description="SGN-E223284 [cLEL-14-M20](-)">
      <seq>ggcacgaggctctttgaagtttctgccttatttacaatgttgtaattgtttgacatttttcatggctgtttgattggtttaaatatgatgtttcttcatctgagtttagttgcagaagatcaccctgtaaggcatatatattcataccttaaagtgtgacatctctgtaaataatgaatgttagaagcaatgtggtttgtgaaaatatgagcatctatttacttggattagcgcacactttggttaaaaaaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="-" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="78450" stop="77610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78146" g_stop="77901" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="255" r_length="246" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="-" ref_id="SGN-E223284" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>246</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78146" e_stop="77901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTGAAGTTTCTGCCTTATTTACAATGTTGTAATTGTTTGACATTTTTCATGGCTGTTTGATTGGTTTAAATATGATGTTTCTTCATCTGAGTTTAGTTGCAGAAGATCACCCTGTAAGGCATATATATTCATACCTTAAAGTGTGACATCTCTGTAAATAATGAATGTTAGAAGCAATGTGGTTTGTGAAAATATGAGCATCTATTTACTTGGATTAGCGCACACTTTGGTTATGCACATTT</genome_strand>
        <mrna_strand>CTCTTTGAAGTTTCTGCCTTATTTACAATGTTGTAATTGTTTGACATTTTTCATGGCTGTTTGATTGGTTTAAATATGATGTTTCTTCATCTGAGTTTAGTTGCAGAAGATCACCCTGTAAGGCATATATATTCATACCTTAAAGTGTGACATCTCTGTAAATAATGAATGTTAGAAGCAATGTGGTTTGTGAAAATATGAGCATCTATTTACTTGGATTAGCGCACACTTTGGTTAAAAAAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E223629" ref_strand="+" ref_description="SGN-E223629 [cLEL-14-M20](-)">
      <seq>ggcacgaggctctttgaagtttctgccttatttacaatgttgtaattgtttgacatttttcatggctgtttgattggtttaaatatgatgtttcttcatctgagtttagttgcagaagatcaccctgtaaggcatatatattcataccttaaagtgtgacatctctgtaaataatgaatgttagaagcaatgtggtttgtgaaaatatgagcatctatttacttggattagcgaacactttggttaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="-" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="78450" stop="77610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78146" g_stop="77905" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="251" r_length="242" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="-" ref_id="SGN-E223629" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>242</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78146" e_stop="77905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTGAAGTTTCTGCCTTATTTACAATGTTGTAATTGTTTGACATTTTTCATGGCTGTTTGATTGGTTTAAATATGATGTTTCTTCATCTGAGTTTAGTTGCAGAAGATCACCCTGTAAGGCATATATATTCATACCTTAAAGTGTGACATCTCTGTAAATAATGAATGTTAGAAGCAATGTGGTTTGTGAAAATATGAGCATCTATTTACTTGGATTAGCGCACACTTTGGTTATGCAC</genome_strand>
        <mrna_strand>CTCTTTGAAGTTTCTGCCTTATTTACAATGTTGTAATTGTTTGACATTTTTCATGGCTGTTTGATTGGTTTAAATATGATGTTTCTTCATCTGAGTTTAGTTGCAGAAGATCACCCTGTAAGGCATATATATTCATACCTTAAAGTGTGACATCTCTGTAAATAATGAATGTTAGAAGCAATGTGGTTTGTGAAAATATGAGCATCTATTTACTTGGATTAGCGAACACTTTGGTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349065" ref_strand="+" ref_description="SGN-E349065 [cTOS-2-E14]">
      <seq>tgagattagaagagttgaacatgttgatcattctcgcaaatctgctgagcaggctgtcaaggcaatatttgccagtgagcaagggaagtctgtcgatgaatatgactaccttccatacttctattcccgcgccttcgatttgtcttggcaattctacggtgataatgtgggtgaaacagtgctctttggggacgctgatcccaactctgcaactcacaagtttggacaatactggatcaaagatggaaagatcgttggtgcattcctcgagagtgggtcacctgaagagaacaaggcaattgctaaggttgcaaaggttcaaccccctgctaccttggatcaattggcacaggagggcatcagttttgcctcaaagatctaatttttatacctactttggattttaaaacagctctttgaagtttctgccttatttacaatgttgtaattgtttgacatttttcatggctgtttgattggtttaaatatgatgtttcttcatctgagtttagttgcagaagatcaccctgtaaggcatatatattcataccttaaagtgtgacatctctgtaaataatgaatgttagaagcaatgtggtttgtgaaaatatgagcatctatttacttggattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="-" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="79308" stop="77626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79008" g_stop="78948" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78947" i_stop="78498" i_length="450">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78497" g_stop="77917" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="642" r_length="581" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="-" ref_id="SGN-E349065" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79008" e_stop="78948"/>
          <exon e_start="78497" e_stop="77917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGATTAGAAGAGTTGAACATGTTGATCATTCTCGCAAATCTGCTGAGCAGGCTGTCAAGGTATGTGACAGCTCCCTGACGCTATCCAGAGTTGATATGGAAGTTTTATATGAAAGTTTTATATCGTCATCCTGCTTATAATATGTTGATTCTTTACTTGGTCAACCGTGATTGCTCTCATGAGTCATGATATAAACTGGATATTTGAACCACACTACACATGCAGATTAGGGTGTTCAAATACTGAAAACTATCTCCATTCTACATGCCTACTGATTGTTTATTGTCCTGGCATGAGTACAAATTTGTAACAATGCAACGTTAAATTACACTCACACAGCACACAGGTTATCTTTTGCTTCCACTGTGTGACTTATTAGAATAGCTTTCTGCAGTTTGCTAGTGTCTTTCTACTCTGTCAATCAACTCGGTCAAATGTAGTTACAAATTCTCATACTCCACATCTTCTTATGAAGTAAAAATGTTAATGTTACATTGTTGCTGGTGCAGGCAATATTTGCCAGTGAGCAAGGGAAGTCTGTCGATGAATATGACTACCTTCCATACTTCTATTCCCGCGCCTTCGATTTGTCTTGGCAATTCTACGGTGATAATGTGGGTGAAACAGTGCTCTTTGGGGACGCTGATCCCAACTCTGCAACTCACAAGTTTGGACAATACTGGATCAAAGATGGAAAGATCGTTGGTGCATTCCTCGAGAGTGGGTCACCTGAAGAGAACAAGGCAATTGCTAAGGTTGCAAAGGTTCAACCCCCTGCTACCTTGGATCAATTGGCACAGGAGGGCATCAGTTTTGCCTCAAAGATCTAATTTTTATACCTACTTTGGATTTTAAAACAGCTCTTTGAAGTTTCTGCCTTATTTACAATGTTGTAATTGTTTGACATTTTTCATGGCTGTTTGATTGGTTTAAATATGATGTTTCTTCATCTGAGTTTAGTTGCAGAAGATCACCCTGTAAGGCATATATATTCATACCTTAAAGTGTGACATCTCTGTAAATAATGAATGTTAGAAGCAATGTGGTTTGTGAAAATATGAGCATCTATTTACTTGGATTAGCGCACACT</genome_strand>
        <mrna_strand>TGAGATTAGAAGAGTTGAACATGTTGATCATTCTCGCAAATCTGCTGAGCAGGCTGTCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATATTTGCCAGTGAGCAAGGGAAGTCTGTCGATGAATATGACTACCTTCCATACTTCTATTCCCGCGCCTTCGATTTGTCTTGGCAATTCTACGGTGATAATGTGGGTGAAACAGTGCTCTTTGGGGACGCTGATCCCAACTCTGCAACTCACAAGTTTGGACAATACTGGATCAAAGATGGAAAGATCGTTGGTGCATTCCTCGAGAGTGGGTCACCTGAAGAGAACAAGGCAATTGCTAAGGTTGCAAAGGTTCAACCCCCTGCTACCTTGGATCAATTGGCACAGGAGGGCATCAGTTTTGCCTCAAAGATCTAATTTTTATACCTACTTTGGATTTTAAAACAGCTCTTTGAAGTTTCTGCCTTATTTACAATGTTGTAATTGTTTGACATTTTTCATGGCTGTTTGATTGGTTTAAATATGATGTTTCTTCATCTGAGTTTAGTTGCAGAAGATCACCCTGTAAGGCATATATATTCATACCTTAAAGTGTGACATCTCTGTAAATAATGAATGTTAGAAGCAATGTGGTTTGTGAAAATATGAGCATCTATTTACTTGGATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351689" ref_strand="+" ref_description="SGN-E351689 [cTOS-8-E14]">
      <seq>tgagattagaagagttgaacatgttgatcattctcgcaaatctgctgagcaggctgtcaaggcaatatttgccagtgagcaagggaagtctgtcgatgaatatgactaccttccatacttctattcccgcgccttcgatttgtcttggcaattctacggtgataatgtgggtgaaacagtgctctttggggacgctgatcccaactctgcaactcacaagtttggacaatactggatcaaagatggaaagatcgttggtgcattcctcgagagtgggtcacctgaagagaacaaggcaattgctaaggttgcaaaggttcaaccccctgctaccttggatcaattggcacaggagggcatcagttttgcctcaaagatctaatttttatacctactttggattttaaaacagctctttgaagtttctgccttatttacaatgttgtaattgtttgacatttttcatggctgtttgattggtttaaatatgatgtttcttcatctgagtttagttgcagaagatcaccctgtaaggcatatatattcataccttaaagtgtgacatctctgtaaataatgaatgttagaagcaatgtggtttgtgaaaatatgagcatctatttacttggattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="-" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="79308" stop="77626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79008" g_stop="78948" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78947" i_stop="78498" i_length="450">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78497" g_stop="77917" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="642" r_length="581" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="-" ref_id="SGN-E351689" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79008" e_stop="78948"/>
          <exon e_start="78497" e_stop="77917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGATTAGAAGAGTTGAACATGTTGATCATTCTCGCAAATCTGCTGAGCAGGCTGTCAAGGTATGTGACAGCTCCCTGACGCTATCCAGAGTTGATATGGAAGTTTTATATGAAAGTTTTATATCGTCATCCTGCTTATAATATGTTGATTCTTTACTTGGTCAACCGTGATTGCTCTCATGAGTCATGATATAAACTGGATATTTGAACCACACTACACATGCAGATTAGGGTGTTCAAATACTGAAAACTATCTCCATTCTACATGCCTACTGATTGTTTATTGTCCTGGCATGAGTACAAATTTGTAACAATGCAACGTTAAATTACACTCACACAGCACACAGGTTATCTTTTGCTTCCACTGTGTGACTTATTAGAATAGCTTTCTGCAGTTTGCTAGTGTCTTTCTACTCTGTCAATCAACTCGGTCAAATGTAGTTACAAATTCTCATACTCCACATCTTCTTATGAAGTAAAAATGTTAATGTTACATTGTTGCTGGTGCAGGCAATATTTGCCAGTGAGCAAGGGAAGTCTGTCGATGAATATGACTACCTTCCATACTTCTATTCCCGCGCCTTCGATTTGTCTTGGCAATTCTACGGTGATAATGTGGGTGAAACAGTGCTCTTTGGGGACGCTGATCCCAACTCTGCAACTCACAAGTTTGGACAATACTGGATCAAAGATGGAAAGATCGTTGGTGCATTCCTCGAGAGTGGGTCACCTGAAGAGAACAAGGCAATTGCTAAGGTTGCAAAGGTTCAACCCCCTGCTACCTTGGATCAATTGGCACAGGAGGGCATCAGTTTTGCCTCAAAGATCTAATTTTTATACCTACTTTGGATTTTAAAACAGCTCTTTGAAGTTTCTGCCTTATTTACAATGTTGTAATTGTTTGACATTTTTCATGGCTGTTTGATTGGTTTAAATATGATGTTTCTTCATCTGAGTTTAGTTGCAGAAGATCACCCTGTAAGGCATATATATTCATACCTTAAAGTGTGACATCTCTGTAAATAATGAATGTTAGAAGCAATGTGGTTTGTGAAAATATGAGCATCTATTTACTTGGATTAGCGCACACT</genome_strand>
        <mrna_strand>TGAGATTAGAAGAGTTGAACATGTTGATCATTCTCGCAAATCTGCTGAGCAGGCTGTCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATATTTGCCAGTGAGCAAGGGAAGTCTGTCGATGAATATGACTACCTTCCATACTTCTATTCCCGCGCCTTCGATTTGTCTTGGCAATTCTACGGTGATAATGTGGGTGAAACAGTGCTCTTTGGGGACGCTGATCCCAACTCTGCAACTCACAAGTTTGGACAATACTGGATCAAAGATGGAAAGATCGTTGGTGCATTCCTCGAGAGTGGGTCACCTGAAGAGAACAAGGCAATTGCTAAGGTTGCAAAGGTTCAACCCCCTGCTACCTTGGATCAATTGGCACAGGAGGGCATCAGTTTTGCCTCAAAGATCTAATTTTTATACCTACTTTGGATTTTAAAACAGCTCTTTGAAGTTTCTGCCTTATTTACAATGTTGTAATTGTTTGACATTTTTCATGGCTGTTTGATTGGTTTAAATATGATGTTTCTTCATCTGAGTTTAGTTGCAGAAGATCACCCTGTAAGGCATATATATTCATACCTTAAAGTGTGACATCTCTGTAAATAATGAATGTTAGAAGCAATGTGGTTTGTGAAAATATGAGCATCTATTTACTTGGATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342952" ref_strand="+" ref_description="SGN-E342952 [cTOF-11-O2]">
      <seq>gcaagttgaagaggagaagggtggaattaagacagatgcgttcttcaaaacaagtgtacctgatgtatatgctgtgggtgatgttgccacttttcctttgaaaatgtacaatgagattagaagagttgaacatgttgatcattctcgcaaatctgctgagcaggctgtcaaggcaatatttgccagtgagcaagggaagtctgtcgatgaatatgactaccttccatacttctattcccgcgccttcgatttgtcttggcaattctacggtgataatgtgggtgaaacagtgctctttggggacgctgatcccaactctgcaactcacaagtttggacaatactggatcaaagatggaaagatcgttggtgcattcctcgagagtgggtcacctgaagagaacaaggcaattgctaaggttgcaaaggttcaaccccctgctaccttggatcaattggcacaggagggcatcagttttgcctcaaagatctaatttttatacctactttggattttaaaacagctctttgaagtttctgccttatttacaatgttgtaattgtttgacatttttcatggctgtttgattggttaaatatgatgtttcttcatctgagtttagttgcagaagatcaccctgttaggcatatatattcataccttaaagtgtgacatctctgtaataatgaatgttagagcaatgtggtttgtgaaatatgagcatctatttacttggattagcccaaatttttggttatgcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="-" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="79853" stop="77604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79553" g_stop="79523" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79522" i_stop="79089" i_length="434">
            <donor d_prob="0.974" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79088" g_stop="78948" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="172" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78947" i_stop="78498" i_length="450">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78497" g_stop="77924" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="742" r_length="570" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="761" polyA_stop="775"/>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="-" ref_id="SGN-E342952" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79553" e_stop="79523"/>
          <exon e_start="79088" e_stop="78948"/>
          <exon e_start="78497" e_stop="77924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGTTGAAGAGGAGAAGGGTGGAATTAAGGTGTGCACTCACTGTTCAGTACTCATCCTTTTAATAAGTTCTGGCTTGCGTGCTTTTTGATAATTTTGTCATTTTCATGGTTAAACCTTTGAATTTGCAGTATAATGTACCAAAACAAATTAAATAGTTCAGTATAAGCTTCGAAAATAGAGGAGAGCAACTGGGATGATTTGTTGAAGGAACAGATCAATGTATTCCGGAAATTGTGGTGCTACTTTAGTCAATACAAAGAAATGAGCTAATTTTGCACATAAGAAATTGCATCAAATAGTGGAAATCAATGAACTTGTTTTATAGTTTCCATGTTGAACTAAAACTGTGTTCCTGTCAAGCTATAAGCTGTTTCTCCTATGTATCAGAATTACAATGGATTATGTCATGTTCCATTCAAAATGACACTATTCCTGTACTTACACCAAGGCTTTTTTTTGCAGACAGATGCGTTCTTCAAAACAAGTGTACCTGATGTATATGCTGTGGGTGATGTTGCCACTTTTCCTTTGAAAATGTACAATGAGATTAGAAGAGTTGAACATGTTGATCATTCTCGCAAATCTGCTGAGCAGGCTGTCAAGGTATGTGACAGCTCCCTGACGCTATCCAGAGTTGATATGGAAGTTTTATATGAAAGTTTTATATCGTCATCCTGCTTATAATATGTTGATTCTTTACTTGGTCAACCGTGATTGCTCTCATGAGTCATGATATAAACTGGATATTTGAACCACACTACACATGCAGATTAGGGTGTTCAAATACTGAAAACTATCTCCATTCTACATGCCTACTGATTGTTTATTGTCCTGGCATGAGTACAAATTTGTAACAATGCAACGTTAAATTACACTCACACAGCACACAGGTTATCTTTTGCTTCCACTGTGTGACTTATTAGAATAGCTTTCTGCAGTTTGCTAGTGTCTTTCTACTCTGTCAATCAACTCGGTCAAATGTAGTTACAAATTCTCATACTCCACATCTTCTTATGAAGTAAAAATGTTAATGTTACATTGTTGCTGGTGCAGGCAATATTTGCCAGTGAGCAAGGGAAGTCTGTCGATGAATATGACTACCTTCCATACTTCTATTCCCGCGCCTTCGATTTGTCTTGGCAATTCTACGGTGATAATGTGGGTGAAACAGTGCTCTTTGGGGACGCTGATCCCAACTCTGCAACTCACAAGTTTGGACAATACTGGATCAAAGATGGAAAGATCGTTGGTGCATTCCTCGAGAGTGGGTCACCTGAAGAGAACAAGGCAATTGCTAAGGTTGCAAAGGTTCAACCCCCTGCTACCTTGGATCAATTGGCACAGGAGGGCATCAGTTTTGCCTCAAAGATCTAATTTTTATACCTACTTTGGATTTTAAAACAGCTCTTTGAAGTTTCTGCCTTATTTACAATGTTGTAATTGTTTGACATTTTTCATGGCTGTTTGATTGGTTTAAATATGATGTTTCTTCATCTGAGTTTAGTTGCAGAAGATCACCCTGTAAGGCATATATATTCATACCTTAAAGTGTGACATCTCTGTAAATAATGAATGTTAGAAGCAATGTGGTTTGTGAAAATATGAGCATCTATTTACTTGGATTAGC</genome_strand>
        <mrna_strand>GCAAGTTGAAGAGGAGAAGGGTGGAATTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGATGCGTTCTTCAAAACAAGTGTACCTGATGTATATGCTGTGGGTGATGTTGCCACTTTTCCTTTGAAAATGTACAATGAGATTAGAAGAGTTGAACATGTTGATCATTCTCGCAAATCTGCTGAGCAGGCTGTCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATATTTGCCAGTGAGCAAGGGAAGTCTGTCGATGAATATGACTACCTTCCATACTTCTATTCCCGCGCCTTCGATTTGTCTTGGCAATTCTACGGTGATAATGTGGGTGAAACAGTGCTCTTTGGGGACGCTGATCCCAACTCTGCAACTCACAAGTTTGGACAATACTGGATCAAAGATGGAAAGATCGTTGGTGCATTCCTCGAGAGTGGGTCACCTGAAGAGAACAAGGCAATTGCTAAGGTTGCAAAGGTTCAACCCCCTGCTACCTTGGATCAATTGGCACAGGAGGGCATCAGTTTTGCCTCAAAGATCTAATTTTTATACCTACTTTGGATTTTAAAACAGCTCTTTGAAGTTTCTGCCTTATTTACAATGTTGTAATTGTTTGACATTTTTCATGGCTGTTTGATTGG-TTAAATATGATGTTTCTTCATCTGAGTTTAGTTGCAGAAGATCACCCTGTTAGGCATATATATTCATACCTTAAAGTGTGACATCTCTGT-AATAATGAATGTTAG-AGCAATGTGGTTTGTG-AAATATGAGCATCTATTTACTTGGATTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203775" ref_strand="-" ref_description="SGN-E203775 [cLEC-17-F13]">
      <seq>gaagagttgaacatgttgatcattctcgcaaatctgctgagcaggctgtcaaggcaatatttgccagtgagcaagggaagtctgtcgatgaatatgactactttccatacttctattcccgcgccttcgatttgtcttggcaattctacggtgataatgtgggtgaaacagtgctctttggggacgctgatcccaactctgcaactcacaagtttggacaatactggatcaaagatggaaagatcgttggtgcattcctcgagagtgggtcacctgaagagaacaaggcaattgctaaggttgcaaaggttcaaccccctgctaccttggatcaattggcacaggagggcatcagttttgcctcaaagatctaatttttatacctactttggattttaaaacagctctttgaagtttctgccttatttacaatgttgtaattgtttgacatttttcatggctgtttgattggtttaaatatgatgtttcttcatctgagtttagttgcagaagatcaccctgtaaggcatatatattcataccttaaagtgtgacatctctgtaaataatgaatgttagaagcaatgtggtttgtgaaaatatgagcatctatttacttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="-" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="79300" stop="77629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79000" g_stop="78948" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78947" i_stop="78498" i_length="450">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78497" g_stop="77929" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="622" r_length="569" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="-" ref_id="SGN-E203775" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203775" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="79000" e_stop="78948"/>
          <exon e_start="78497" e_stop="77929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGTTGAACATGTTGATCATTCTCGCAAATCTGCTGAGCAGGCTGTCAAGGTATGTGACAGCTCCCTGACGCTATCCAGAGTTGATATGGAAGTTTTATATGAAAGTTTTATATCGTCATCCTGCTTATAATATGTTGATTCTTTACTTGGTCAACCGTGATTGCTCTCATGAGTCATGATATAAACTGGATATTTGAACCACACTACACATGCAGATTAGGGTGTTCAAATACTGAAAACTATCTCCATTCTACATGCCTACTGATTGTTTATTGTCCTGGCATGAGTACAAATTTGTAACAATGCAACGTTAAATTACACTCACACAGCACACAGGTTATCTTTTGCTTCCACTGTGTGACTTATTAGAATAGCTTTCTGCAGTTTGCTAGTGTCTTTCTACTCTGTCAATCAACTCGGTCAAATGTAGTTACAAATTCTCATACTCCACATCTTCTTATGAAGTAAAAATGTTAATGTTACATTGTTGCTGGTGCAGGCAATATTTGCCAGTGAGCAAGGGAAGTCTGTCGATGAATATGACTACCTTCCATACTTCTATTCCCGCGCCTTCGATTTGTCTTGGCAATTCTACGGTGATAATGTGGGTGAAACAGTGCTCTTTGGGGACGCTGATCCCAACTCTGCAACTCACAAGTTTGGACAATACTGGATCAAAGATGGAAAGATCGTTGGTGCATTCCTCGAGAGTGGGTCACCTGAAGAGAACAAGGCAATTGCTAAGGTTGCAAAGGTTCAACCCCCTGCTACCTTGGATCAATTGGCACAGGAGGGCATCAGTTTTGCCTCAAAGATCTAATTTTTATACCTACTTTGGATTTTAAAACAGCTCTTTGAAGTTTCTGCCTTATTTACAATGTTGTAATTGTTTGACATTTTTCATGGCTGTTTGATTGGTTTAAATATGATGTTTCTTCATCTGAGTTTAGTTGCAGAAGATCACCCTGTAAGGCATATATATTCATACCTTAAAGTGTGACATCTCTGTAAATAATGAATGTTAGAAGCAATGTGGTTTGTGAAAATATGAGCATCTATTTACTTGGA</genome_strand>
        <mrna_strand>GAAGAGTTGAACATGTTGATCATTCTCGCAAATCTGCTGAGCAGGCTGTCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATATTTGCCAGTGAGCAAGGGAAGTCTGTCGATGAATATGACTACTTTCCATACTTCTATTCCCGCGCCTTCGATTTGTCTTGGCAATTCTACGGTGATAATGTGGGTGAAACAGTGCTCTTTGGGGACGCTGATCCCAACTCTGCAACTCACAAGTTTGGACAATACTGGATCAAAGATGGAAAGATCGTTGGTGCATTCCTCGAGAGTGGGTCACCTGAAGAGAACAAGGCAATTGCTAAGGTTGCAAAGGTTCAACCCCCTGCTACCTTGGATCAATTGGCACAGGAGGGCATCAGTTTTGCCTCAAAGATCTAATTTTTATACCTACTTTGGATTTTAAAACAGCTCTTTGAAGTTTCTGCCTTATTTACAATGTTGTAATTGTTTGACATTTTTCATGGCTGTTTGATTGGTTTAAATATGATGTTTCTTCATCTGAGTTTAGTTGCAGAAGATCACCCTGTAAGGCATATATATTCATACCTTAAAGTGTGACATCTCTGTAAATAATGAATGTTAGAAGCAATGTGGTTTGTGAAAATATGAGCATCTATTTACTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708987" ref_strand="+" ref_description="SGN-E708987 [FA42BD07]">
      <seq>ccatagttttggaagctgacatagtagtcgtaggagtcggagcaagaccactcacaactctattcaaagggcaagttgaagaggagaagggtggaattaagacagatgcgttcttcaaaacaagtgtacctgatgtatatgctgtgggtgatgttgccacttttcctttgaaaatgtacaatgagattagaagagttgaacatgttgatcattctcgcaaatctgctgagcaggctgtcaaggcaatatttgccagtgagcaagggaagtctgtcgatgaatatgactaccttccatacttctattcccgcgccttcgatttgtcttggcaattctacggtgataatgtgggtgaaacagtgctctttggggacgctgatcccaactctgcaactcacaagtttggacaatactggatcaaagatggaaagatcgttggtgcattcctcgagagtgggtcacctgaagagaacaaggcaattgctaaggttgcaaaggttcaaccccctgctaccttggatcaattggcacaggagggcatcagttttgcctcaaagatctaatttttatacctactttggattttaaaacagctctttgaagtttctgccttatttacaatgttgtaattgtttgacatttttcatggctgtttgattggtttaaatatgatgtttcttcatctgagtttagttgcagaagatcaccctgtaaggcatatatattcataccttaaagtgtgacatctctgtaaataatgaatgttagaagcaatgtggtttgtgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="-" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="79922" stop="77649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79623" g_stop="79523" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79522" i_stop="79089" i_length="434">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79088" g_stop="78948" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="242" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78947" i_stop="78498" i_length="450">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78497" g_stop="77942" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="798" r_length="556" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="-" ref_id="SGN-E708987" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79623" e_stop="79523"/>
          <exon e_start="79088" e_stop="78948"/>
          <exon e_start="78497" e_stop="77942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAGTTTTGGAAGCTGACATAGTAGTCGTAGGAGTCGGAGCAAGACCACTCACAACTCTATTCAAAGGGCAAGTTGAAGAGGAGAAGGGTGGAATTAAGGTGTGCACTCACTGTTCAGTACTCATCCTTTTAATAAGTTCTGGCTTGCGTGCTTTTTGATAATTTTGTCATTTTCATGGTTAAACCTTTGAATTTGCAGTATAATGTACCAAAACAAATTAAATAGTTCAGTATAAGCTTCGAAAATAGAGGAGAGCAACTGGGATGATTTGTTGAAGGAACAGATCAATGTATTCCGGAAATTGTGGTGCTACTTTAGTCAATACAAAGAAATGAGCTAATTTTGCACATAAGAAATTGCATCAAATAGTGGAAATCAATGAACTTGTTTTATAGTTTCCATGTTGAACTAAAACTGTGTTCCTGTCAAGCTATAAGCTGTTTCTCCTATGTATCAGAATTACAATGGATTATGTCATGTTCCATTCAAAATGACACTATTCCTGTACTTACACCAAGGCTTTTTTTTGCAGACAGATGCGTTCTTCAAAACAAGTGTACCTGATGTATATGCTGTGGGTGATGTTGCCACTTTTCCTTTGAAAATGTACAATGAGATTAGAAGAGTTGAACATGTTGATCATTCTCGCAAATCTGCTGAGCAGGCTGTCAAGGTATGTGACAGCTCCCTGACGCTATCCAGAGTTGATATGGAAGTTTTATATGAAAGTTTTATATCGTCATCCTGCTTATAATATGTTGATTCTTTACTTGGTCAACCGTGATTGCTCTCATGAGTCATGATATAAACTGGATATTTGAACCACACTACACATGCAGATTAGGGTGTTCAAATACTGAAAACTATCTCCATTCTACATGCCTACTGATTGTTTATTGTCCTGGCATGAGTACAAATTTGTAACAATGCAACGTTAAATTACACTCACACAGCACACAGGTTATCTTTTGCTTCCACTGTGTGACTTATTAGAATAGCTTTCTGCAGTTTGCTAGTGTCTTTCTACTCTGTCAATCAACTCGGTCAAATGTAGTTACAAATTCTCATACTCCACATCTTCTTATGAAGTAAAAATGTTAATGTTACATTGTTGCTGGTGCAGGCAATATTTGCCAGTGAGCAAGGGAAGTCTGTCGATGAATATGACTACCTTCCATACTTCTATTCCCGCGCCTTCGATTTGTCTTGGCAATTCTACGGTGATAATGTGGGTGAAACAGTGCTCTTTGGGGACGCTGATCCCAACTCTGCAACTCACAAGTTTGGACAATACTGGATCAAAGATGGAAAGATCGTTGGTGCATTCCTCGAGAGTGGGTCACCTGAAGAGAACAAGGCAATTGCTAAGGTTGCAAAGGTTCAACCCCCTGCTACCTTGGATCAATTGGCACAGGAGGGCATCAGTTTTGCCTCAAAGATCTAATTTTTATACCTACTTTGGATTTTAAAACAGCTCTTTGAAGTTTCTGCCTTATTTACAATGTTGTAATTGTTTGACATTTTTCATGGCTGTTTGATTGGTTTAAATATGATGTTTCTTCATCTGAGTTTAGTTGCAGAAGATCACCCTGTAAGGCATATATATTCATACCTTAAAGTGTGACATCTCTGTAAATAATGAATGTTAGAAGCAATGTGGTTTGTGAAAATATGAGCAT</genome_strand>
        <mrna_strand>CCATAGTTTTGGAAGCTGACATAGTAGTCGTAGGAGTCGGAGCAAGACCACTCACAACTCTATTCAAAGGGCAAGTTGAAGAGGAGAAGGGTGGAATTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGATGCGTTCTTCAAAACAAGTGTACCTGATGTATATGCTGTGGGTGATGTTGCCACTTTTCCTTTGAAAATGTACAATGAGATTAGAAGAGTTGAACATGTTGATCATTCTCGCAAATCTGCTGAGCAGGCTGTCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATATTTGCCAGTGAGCAAGGGAAGTCTGTCGATGAATATGACTACCTTCCATACTTCTATTCCCGCGCCTTCGATTTGTCTTGGCAATTCTACGGTGATAATGTGGGTGAAACAGTGCTCTTTGGGGACGCTGATCCCAACTCTGCAACTCACAAGTTTGGACAATACTGGATCAAAGATGGAAAGATCGTTGGTGCATTCCTCGAGAGTGGGTCACCTGAAGAGAACAAGGCAATTGCTAAGGTTGCAAAGGTTCAACCCCCTGCTACCTTGGATCAATTGGCACAGGAGGGCATCAGTTTTGCCTCAAAGATCTAATTTTTATACCTACTTTGGATTTTAAAACAGCTCTTTGAAGTTTCTGCCTTATTTACAATGTTGTAATTGTTTGACATTTTTCATGGCTGTTTGATTGGTTTAAATATGATGTTTCTTCATCTGAGTTTAGTTGCAGAAGATCACCCTGTAAGGCATATATATTCATACCTTAAAGTGTGACATCTCTGTAAATAATGAATGTTAGAAGCAATGTGGTTTGTGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282461" ref_strand="+" ref_description="SGN-E282461 [cLER-18-K11]">
      <seq>ttttttttttcacaaaccacattgcttctaacattcattatttacagagatgtcacactttaaggtatgaatatatatgccttacagggtgatcttctgcaactaaactcagatgaagaaacatcatatttaaaccaatcaaacagccatgaaaaatgtcaaacaattacaacattgtaaataaggcagaaacttcaaagagctgttttaaaatccaaagtaggtataaaaattagatctttgaggcaaaactgatgccctcctgtgccaattgatccaaggtagcagggggttgaacctttgcaaccttagcaattgccttgttctcttcaggtgacccactctcgaggaatgcaccaacgatctttccatctttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="+" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="77649" stop="78623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77945" g_stop="78323" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="+" ref_id="SGN-E282461" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77945" e_stop="78323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATATTTTCACAAACCACATTGCTTCTAACATTCATTATTTACAGAGATGTCACACTTTAAGGTATGAATATATATGCCTTACAGGGTGATCTTCTGCAACTAAACTCAGATGAAGAAACATCATATTTAAACCAATCAAACAGCCATGAAAAATGTCAAACAATTACAACATTGTAAATAAGGCAGAAACTTCAAAGAGCTGTTTTAAAATCCAAAGTAGGTATAAAAATTAGATCTTTGAGGCAAAACTGATGCCCTCCTGTGCCAATTGATCCAAGGTAGCAGGGGGTTGAACCTTTGCAACCTTAGCAATTGCCTTGTTCTCTTCAGGTGACCCACTCTCGAGGAATGCACCAACGATCTTTCCATCTTTGAT</genome_strand>
        <mrna_strand>TTTTTTTTTTCACAAACCACATTGCTTCTAACATTCATTATTTACAGAGATGTCACACTTTAAGGTATGAATATATATGCCTTACAGGGTGATCTTCTGCAACTAAACTCAGATGAAGAAACATCATATTTAAACCAATCAAACAGCCATGAAAAATGTCAAACAATTACAACATTGTAAATAAGGCAGAAACTTCAAAGAGCTGTTTTAAAATCCAAAGTAGGTATAAAAATTAGATCTTTGAGGCAAAACTGATGCCCTCCTGTGCCAATTGATCCAAGGTAGCAGGGGGTTGAACCTTTGCAACCTTAGCAATTGCCTTGTTCTCTTCAGGTGACCCACTCTCGAGGAATGCACCAACGATCTTTCCATCTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E714287" ref_strand="+" ref_description="SGN-E714287 [FB11AB03]">
      <seq>attctcgcaaatctgctgagcaggctgtcaaggcaatatttgccagtgagcaagggaagtctgtcgatgaatatgactaccttccatacttctattcccgcgccttcgatttgtcttggcaattctacggtgataatgtgggtgaaacagtgctctttggggacgctgatcccaactctgcaactcacaagtttggacaatactggatcaaagatggaaagatcgttggtgcattcctcgagagtgggtcacctgaagagaacaaggcaattgctaaggttgcaaaggttcaaccccctgctaccttggatcaattggcacaggagggcatcagttttgcctcaaagatctaatttttatacctactttggattttaaaacagctctttgaagtttctgccttatttacaatgttgtaattgtttgacatttttcatggctgtttgattggtttaaatatgatgtttcttcatctgagtttagttgcagaagatcaccctgtaaggcatatatattcataccttaaagtgtgacatctctgtaaataatgaatgttagaagcaatgtggtttgtganaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="-" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="79279" stop="77649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78979" g_stop="78948" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78947" i_stop="78498" i_length="450">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78497" g_stop="77952" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="578" r_length="546" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="579" polyA_stop="598"/>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="-" ref_id="SGN-E714287" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78979" e_stop="78948"/>
          <exon e_start="78497" e_stop="77952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTCGCAAATCTGCTGAGCAGGCTGTCAAGGTATGTGACAGCTCCCTGACGCTATCCAGAGTTGATATGGAAGTTTTATATGAAAGTTTTATATCGTCATCCTGCTTATAATATGTTGATTCTTTACTTGGTCAACCGTGATTGCTCTCATGAGTCATGATATAAACTGGATATTTGAACCACACTACACATGCAGATTAGGGTGTTCAAATACTGAAAACTATCTCCATTCTACATGCCTACTGATTGTTTATTGTCCTGGCATGAGTACAAATTTGTAACAATGCAACGTTAAATTACACTCACACAGCACACAGGTTATCTTTTGCTTCCACTGTGTGACTTATTAGAATAGCTTTCTGCAGTTTGCTAGTGTCTTTCTACTCTGTCAATCAACTCGGTCAAATGTAGTTACAAATTCTCATACTCCACATCTTCTTATGAAGTAAAAATGTTAATGTTACATTGTTGCTGGTGCAGGCAATATTTGCCAGTGAGCAAGGGAAGTCTGTCGATGAATATGACTACCTTCCATACTTCTATTCCCGCGCCTTCGATTTGTCTTGGCAATTCTACGGTGATAATGTGGGTGAAACAGTGCTCTTTGGGGACGCTGATCCCAACTCTGCAACTCACAAGTTTGGACAATACTGGATCAAAGATGGAAAGATCGTTGGTGCATTCCTCGAGAGTGGGTCACCTGAAGAGAACAAGGCAATTGCTAAGGTTGCAAAGGTTCAACCCCCTGCTACCTTGGATCAATTGGCACAGGAGGGCATCAGTTTTGCCTCAAAGATCTAATTTTTATACCTACTTTGGATTTTAAAACAGCTCTTTGAAGTTTCTGCCTTATTTACAATGTTGTAATTGTTTGACATTTTTCATGGCTGTTTGATTGGTTTAAATATGATGTTTCTTCATCTGAGTTTAGTTGCAGAAGATCACCCTGTAAGGCATATATATTCATACCTTAAAGTGTGACATCTCTGTAAATAATGAATGTTAGAAGCAATGTGGTTTGTGAAA</genome_strand>
        <mrna_strand>ATTCTCGCAAATCTGCTGAGCAGGCTGTCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATATTTGCCAGTGAGCAAGGGAAGTCTGTCGATGAATATGACTACCTTCCATACTTCTATTCCCGCGCCTTCGATTTGTCTTGGCAATTCTACGGTGATAATGTGGGTGAAACAGTGCTCTTTGGGGACGCTGATCCCAACTCTGCAACTCACAAGTTTGGACAATACTGGATCAAAGATGGAAAGATCGTTGGTGCATTCCTCGAGAGTGGGTCACCTGAAGAGAACAAGGCAATTGCTAAGGTTGCAAAGGTTCAACCCCCTGCTACCTTGGATCAATTGGCACAGGAGGGCATCAGTTTTGCCTCAAAGATCTAATTTTTATACCTACTTTGGATTTTAAAACAGCTCTTTGAAGTTTCTGCCTTATTTACAATGTTGTAATTGTTTGACATTTTTCATGGCTGTTTGATTGGTTTAAATATGATGTTTCTTCATCTGAGTTTAGTTGCAGAAGATCACCCTGTAAGGCATATATATTCATACCTTAAAGTGTGACATCTCTGTAAATAATGAATGTTAGAAGCAATGTGGTTTGTGANA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E715030" ref_strand="+" ref_description="SGN-E715030 [FB13AE07]">
      <seq>attctcgcaaatctgctgagcaggctgtcaaggcaatatttgccagtgagcaagggaagtctgtcgatgaatatgactaccttccatacttctattcccgcgccttcgatttgtcttggcaattctacggtgataatgtgggtgaaacagtgctctttggggacgctgatcccaactctgcaactcacaagtttggacaatactggatcaaagatggaaagatcgttggtgcattcctcgagagtgggtcacctgaagagaacaaggcaattgctaaggttgcaaaggttcaaccccctgctaccttggatcaattggcacaggagggcatcagttttgcctcaaagatctaatttttatacctactttggattttaaaacagctctttgaagtttctgccttatttacaatgttgtaattgtttgacatttttcatggctgtttgattggtttaaatatgatgtttcttcatctgagtttagttgcagaagatcaccctgtaaggcatatatattcataccttaaagtgtgacatctctgtaaataatgaatgttagaagcaatgtggtttgtgaaannaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="-" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="79279" stop="77652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78979" g_stop="78948" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78947" i_stop="78498" i_length="450">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78497" g_stop="77952" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="578" r_length="546" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="581" polyA_stop="597"/>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="-" ref_id="SGN-E715030" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78979" e_stop="78948"/>
          <exon e_start="78497" e_stop="77952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTCGCAAATCTGCTGAGCAGGCTGTCAAGGTATGTGACAGCTCCCTGACGCTATCCAGAGTTGATATGGAAGTTTTATATGAAAGTTTTATATCGTCATCCTGCTTATAATATGTTGATTCTTTACTTGGTCAACCGTGATTGCTCTCATGAGTCATGATATAAACTGGATATTTGAACCACACTACACATGCAGATTAGGGTGTTCAAATACTGAAAACTATCTCCATTCTACATGCCTACTGATTGTTTATTGTCCTGGCATGAGTACAAATTTGTAACAATGCAACGTTAAATTACACTCACACAGCACACAGGTTATCTTTTGCTTCCACTGTGTGACTTATTAGAATAGCTTTCTGCAGTTTGCTAGTGTCTTTCTACTCTGTCAATCAACTCGGTCAAATGTAGTTACAAATTCTCATACTCCACATCTTCTTATGAAGTAAAAATGTTAATGTTACATTGTTGCTGGTGCAGGCAATATTTGCCAGTGAGCAAGGGAAGTCTGTCGATGAATATGACTACCTTCCATACTTCTATTCCCGCGCCTTCGATTTGTCTTGGCAATTCTACGGTGATAATGTGGGTGAAACAGTGCTCTTTGGGGACGCTGATCCCAACTCTGCAACTCACAAGTTTGGACAATACTGGATCAAAGATGGAAAGATCGTTGGTGCATTCCTCGAGAGTGGGTCACCTGAAGAGAACAAGGCAATTGCTAAGGTTGCAAAGGTTCAACCCCCTGCTACCTTGGATCAATTGGCACAGGAGGGCATCAGTTTTGCCTCAAAGATCTAATTTTTATACCTACTTTGGATTTTAAAACAGCTCTTTGAAGTTTCTGCCTTATTTACAATGTTGTAATTGTTTGACATTTTTCATGGCTGTTTGATTGGTTTAAATATGATGTTTCTTCATCTGAGTTTAGTTGCAGAAGATCACCCTGTAAGGCATATATATTCATACCTTAAAGTGTGACATCTCTGTAAATAATGAATGTTAGAAGCAATGTGGTTTGTGAAA</genome_strand>
        <mrna_strand>ATTCTCGCAAATCTGCTGAGCAGGCTGTCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATATTTGCCAGTGAGCAAGGGAAGTCTGTCGATGAATATGACTACCTTCCATACTTCTATTCCCGCGCCTTCGATTTGTCTTGGCAATTCTACGGTGATAATGTGGGTGAAACAGTGCTCTTTGGGGACGCTGATCCCAACTCTGCAACTCACAAGTTTGGACAATACTGGATCAAAGATGGAAAGATCGTTGGTGCATTCCTCGAGAGTGGGTCACCTGAAGAGAACAAGGCAATTGCTAAGGTTGCAAAGGTTCAACCCCCTGCTACCTTGGATCAATTGGCACAGGAGGGCATCAGTTTTGCCTCAAAGATCTAATTTTTATACCTACTTTGGATTTTAAAACAGCTCTTTGAAGTTTCTGCCTTATTTACAATGTTGTAATTGTTTGACATTTTTCATGGCTGTTTGATTGGTTTAAATATGATGTTTCTTCATCTGAGTTTAGTTGCAGAAGATCACCCTGTAAGGCATATATATTCATACCTTAAAGTGTGACATCTCTGTAAATAATGAATGTTAGAAGCAATGTGGTTTGTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282347" ref_strand="+" ref_description="SGN-E282347 [cLER-18-O9]">
      <seq>caaaccacattgcttctaacattcattatttacagagatgtcacactttaaggtatgaatatatatgccttacagggtgatcttctgcaactaaactcagatgaagaaacatcatatttaaaccaatcaaacagccatgaaaaatgtcaaacaattacaacattgtaaataaggcagaaacttcaaagagctgttttaaaatccaaagtaggtataaaaattagatctttgaggcaaaactgatgccctcctgtgccaattgatccaaggtagcagggggttgaacctttgcaaccttagcaattgccttgttctcttcaggtgacccactctcgaggaatgcaccaacgatctttccatctttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="+" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="77657" stop="78623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77957" g_stop="78323" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="+" ref_id="SGN-E282347" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77957" e_stop="78323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACCACATTGCTTCTAACATTCATTATTTACAGAGATGTCACACTTTAAGGTATGAATATATATGCCTTACAGGGTGATCTTCTGCAACTAAACTCAGATGAAGAAACATCATATTTAAACCAATCAAACAGCCATGAAAAATGTCAAACAATTACAACATTGTAAATAAGGCAGAAACTTCAAAGAGCTGTTTTAAAATCCAAAGTAGGTATAAAAATTAGATCTTTGAGGCAAAACTGATGCCCTCCTGTGCCAATTGATCCAAGGTAGCAGGGGGTTGAACCTTTGCAACCTTAGCAATTGCCTTGTTCTCTTCAGGTGACCCACTCTCGAGGAATGCACCAACGATCTTTCCATCTTTGAT</genome_strand>
        <mrna_strand>CAAACCACATTGCTTCTAACATTCATTATTTACAGAGATGTCACACTTTAAGGTATGAATATATATGCCTTACAGGGTGATCTTCTGCAACTAAACTCAGATGAAGAAACATCATATTTAAACCAATCAAACAGCCATGAAAAATGTCAAACAATTACAACATTGTAAATAAGGCAGAAACTTCAAAGAGCTGTTTTAAAATCCAAAGTAGGTATAAAAATTAGATCTTTGAGGCAAAACTGATGCCCTCCTGTGCCAATTGATCCAAGGTAGCAGGGGGTTGAACCTTTGCAACCTTAGCAATTGCCTTGTTCTCTTCAGGTGACCCACTCTCGAGGAATGCACCAACGATCTTTCCATCTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353551" ref_strand="+" ref_description="SGN-E353551 [cTOS-15-F9]">
      <seq>aagagttgaacatgttgatcattctcgcaaatctgctgagcaggctgtcaaggcaatatttgccagtgagcaagggaagtctgtcgatgaatatgactaccttccatacttctattcccgcgccttcgatttgtcttggcaattctacggtgataatgtgggtgaaacagtgctctttggggacgctgatcccaactctgcaactcacaagtttggacaatactggatcaaagatggaaagatcgttggtgcattcctcgagagtgggtcacctgaagagaacaaggcaattgctaaggttgcaaaggttcaaccccctgctaccttggatcaattggcacaggagggcatcagttttgcctcaaagatctaatttttatacctactttggattttaaaacagctctttgaagtttctgccttatttacaatgttgtaattgtttgacatttttcatggctgtttgattggntttaatatgatgtttcttcatctgagtttagttgcagaagatcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="-" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="79299" stop="77732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78999" g_stop="78948" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78947" i_stop="78498" i_length="450">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78497" g_stop="78032" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="518" r_length="466" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="-" ref_id="SGN-E353551" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78999" e_stop="78948"/>
          <exon e_start="78497" e_stop="78032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTTGAACATGTTGATCATTCTCGCAAATCTGCTGAGCAGGCTGTCAAGGTATGTGACAGCTCCCTGACGCTATCCAGAGTTGATATGGAAGTTTTATATGAAAGTTTTATATCGTCATCCTGCTTATAATATGTTGATTCTTTACTTGGTCAACCGTGATTGCTCTCATGAGTCATGATATAAACTGGATATTTGAACCACACTACACATGCAGATTAGGGTGTTCAAATACTGAAAACTATCTCCATTCTACATGCCTACTGATTGTTTATTGTCCTGGCATGAGTACAAATTTGTAACAATGCAACGTTAAATTACACTCACACAGCACACAGGTTATCTTTTGCTTCCACTGTGTGACTTATTAGAATAGCTTTCTGCAGTTTGCTAGTGTCTTTCTACTCTGTCAATCAACTCGGTCAAATGTAGTTACAAATTCTCATACTCCACATCTTCTTATGAAGTAAAAATGTTAATGTTACATTGTTGCTGGTGCAGGCAATATTTGCCAGTGAGCAAGGGAAGTCTGTCGATGAATATGACTACCTTCCATACTTCTATTCCCGCGCCTTCGATTTGTCTTGGCAATTCTACGGTGATAATGTGGGTGAAACAGTGCTCTTTGGGGACGCTGATCCCAACTCTGCAACTCACAAGTTTGGACAATACTGGATCAAAGATGGAAAGATCGTTGGTGCATTCCTCGAGAGTGGGTCACCTGAAGAGAACAAGGCAATTGCTAAGGTTGCAAAGGTTCAACCCCCTGCTACCTTGGATCAATTGGCACAGGAGGGCATCAGTTTTGCCTCAAAGATCTAATTTTTATACCTACTTTGGATTTTAAAACAGCTCTTTGAAGTTTCTGCCTTATTTACAATGTTGTAATTGTTTGACATTTTTCATGGCTGTTTGATTGGTTTAAATATGATGTTTCTTCATCTGAGTTTAGTTGCAGAAGATCACC</genome_strand>
        <mrna_strand>AAGAGTTGAACATGTTGATCATTCTCGCAAATCTGCTGAGCAGGCTGTCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATATTTGCCAGTGAGCAAGGGAAGTCTGTCGATGAATATGACTACCTTCCATACTTCTATTCCCGCGCCTTCGATTTGTCTTGGCAATTCTACGGTGATAATGTGGGTGAAACAGTGCTCTTTGGGGACGCTGATCCCAACTCTGCAACTCACAAGTTTGGACAATACTGGATCAAAGATGGAAAGATCGTTGGTGCATTCCTCGAGAGTGGGTCACCTGAAGAGAACAAGGCAATTGCTAAGGTTGCAAAGGTTCAACCCCCTGCTACCTTGGATCAATTGGCACAGGAGGGCATCAGTTTTGCCTCAAAGATCTAATTTTTATACCTACTTTGGATTTTAAAACAGCTCTTTGAAGTTTCTGCCTTATTTACAATGTTGTAATTGTTTGACATTTTTCATGGCTGTTTGATTGGNTTTAATATGATGTTTCTTCATCTGAGTTTAGTTGCAGAAGATCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345591" ref_strand="+" ref_description="SGN-E345591 [cTOF-18-G11]">
      <seq>ccatccaaatggagaggtgaaggaagtcaaactcaaagatggcagagttttggaagctgacatagtagtcgtaggagtcggagcaagaccactcacaactctattcaaagggcaagttgaagaggagaagggtggaattaagacagatgcgttcttcaaaacaagtgtacctgatgtatatgctgtgggtgatgttgccacttttcctttgaaaatgtacaatgagattagaagagttgaacatgttgatcattctcgcaaatctgctgagcaggctgtcaaggcaatatttgccagtgagcaagggaagtctgtcgatgaatatgactaccttccatacttctattcccgcgccttcgatttgtcttggcaattctacggtgataatgtgggtgaaacagtgctctttggggacgctgatcccaactctgcaactcacaagtttggacaatactggatcaaagatggaaagatcgttggtgcattcctcgagagtgggtcacctgaagagacaaggcaattgctaaggttgcaaaggttcaaccccctgctaccttggatcaattggcacaggagggcatcagttntgcctcaaagatctaatttttatacctactttggattttaaaacagctctttgaagtttctgccttattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="-" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="79950" stop="77822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79748" g_stop="79733" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79732" i_stop="79649" i_length="84">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79648" g_stop="79523" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="142" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79522" i_stop="79089" i_length="434">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79088" g_stop="78948" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="283" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78947" i_stop="78498" i_length="450">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78497" g_stop="78122" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="658" r_length="375" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="-" ref_id="SGN-E345591" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79748" e_stop="79733"/>
          <exon e_start="79648" e_stop="79523"/>
          <exon e_start="79088" e_stop="78948"/>
          <exon e_start="78497" e_stop="78122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATCCAAATGGAGAGGTTTTTCTCTAGACTCTACCATTTTGAGAAATCTGGTTGAGCTTTAGAGCATTACCTCACAGCATTCTTGTTTTGAATTTGCAGGTGAAGGAAGTCAAACTCAAAGATGGCAGAGTTTTGGAAGCTGACATAGTAGTCGTAGGAGTCGGAGCAAGACCACTCACAACTCTATTCAAAGGGCAAGTTGAAGAGGAGAAGGGTGGAATTAAGGTGTGCACTCACTGTTCAGTACTCATCCTTTTAATAAGTTCTGGCTTGCGTGCTTTTTGATAATTTTGTCATTTTCATGGTTAAACCTTTGAATTTGCAGTATAATGTACCAAAACAAATTAAATAGTTCAGTATAAGCTTCGAAAATAGAGGAGAGCAACTGGGATGATTTGTTGAAGGAACAGATCAATGTATTCCGGAAATTGTGGTGCTACTTTAGTCAATACAAAGAAATGAGCTAATTTTGCACATAAGAAATTGCATCAAATAGTGGAAATCAATGAACTTGTTTTATAGTTTCCATGTTGAACTAAAACTGTGTTCCTGTCAAGCTATAAGCTGTTTCTCCTATGTATCAGAATTACAATGGATTATGTCATGTTCCATTCAAAATGACACTATTCCTGTACTTACACCAAGGCTTTTTTTTGCAGACAGATGCGTTCTTCAAAACAAGTGTACCTGATGTATATGCTGTGGGTGATGTTGCCACTTTTCCTTTGAAAATGTACAATGAGATTAGAAGAGTTGAACATGTTGATCATTCTCGCAAATCTGCTGAGCAGGCTGTCAAGGTATGTGACAGCTCCCTGACGCTATCCAGAGTTGATATGGAAGTTTTATATGAAAGTTTTATATCGTCATCCTGCTTATAATATGTTGATTCTTTACTTGGTCAACCGTGATTGCTCTCATGAGTCATGATATAAACTGGATATTTGAACCACACTACACATGCAGATTAGGGTGTTCAAATACTGAAAACTATCTCCATTCTACATGCCTACTGATTGTTTATTGTCCTGGCATGAGTACAAATTTGTAACAATGCAACGTTAAATTACACTCACACAGCACACAGGTTATCTTTTGCTTCCACTGTGTGACTTATTAGAATAGCTTTCTGCAGTTTGCTAGTGTCTTTCTACTCTGTCAATCAACTCGGTCAAATGTAGTTACAAATTCTCATACTCCACATCTTCTTATGAAGTAAAAATGTTAATGTTACATTGTTGCTGGTGCAGGCAATATTTGCCAGTGAGCAAGGGAAGTCTGTCGATGAATATGACTACCTTCCATACTTCTATTCCCGCGCCTTCGATTTGTCTTGGCAATTCTACGGTGATAATGTGGGTGAAACAGTGCTCTTTGGGGACGCTGATCCCAACTCTGCAACTCACAAGTTTGGACAATACTGGATCAAAGATGGAAAGATCGTTGGTGCATTCCTCGAGAGTGGGTCACCTGAAGAGAACAAGGCAATTGCTAAGGTTGCAAAGGTTCAACCCCCTGCTACCTTGGATCAATTGGCACAGGAGGGCATCAGTTTTGCCTCAAAGATCTAATTTTTATACCTACTTTGGATTTTAAAACAGCTCTTTGAAGTTTCTGCCTTATTTA</genome_strand>
        <mrna_strand>CCATCCAAATGGAGAG....................................................................................GTGAAGGAAGTCAAACTCAAAGATGGCAGAGTTTTGGAAGCTGACATAGTAGTCGTAGGAGTCGGAGCAAGACCACTCACAACTCTATTCAAAGGGCAAGTTGAAGAGGAGAAGGGTGGAATTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGATGCGTTCTTCAAAACAAGTGTACCTGATGTATATGCTGTGGGTGATGTTGCCACTTTTCCTTTGAAAATGTACAATGAGATTAGAAGAGTTGAACATGTTGATCATTCTCGCAAATCTGCTGAGCAGGCTGTCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATATTTGCCAGTGAGCAAGGGAAGTCTGTCGATGAATATGACTACCTTCCATACTTCTATTCCCGCGCCTTCGATTTGTCTTGGCAATTCTACGGTGATAATGTGGGTGAAACAGTGCTCTTTGGGGACGCTGATCCCAACTCTGCAACTCACAAGTTTGGACAATACTGGATCAAAGATGGAAAGATCGTTGGTGCATTCCTCGAGAGTGGGTCACCTGAAGAG-ACAAGGCAATTGCTAAGGTTGCAAAGGTTCAACCCCCTGCTACCTTGGATCAATTGGCACAGGAGGGCATCAGTTNTGCCTCAAAGATCTAATTTTTATACCTACTTTGGATTTTAAAACAGCTCTTTGAAGTTTCTGCCTTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697671" ref_strand="+" ref_description="SGN-E697671 [FA03DA12]">
      <seq>ggctgcaggaattcggcacgagggctgttgttgttgggggagggtacatcggtctcgagcttagtgctgtactgagactgaacaacattgaagtcaatatggtttacccagaaccatggtgcatgcctcggcttttcacagagggcatagctgcgttctatgaaggttattataaaaacaagggagtcaatattatcaagggtacagtggctgttgggtttgatacccatccaaatggagaggtgaaggaagtcaaactcaaagatggcagagttttggaagctgacatagtagtcgtaggagtcggagcaagaccactcacaactctattcaaagggcaagttgaagaggagaagggtggaattaagacagatgcgttcttcaaaacaagtgtacctgatgtatatgctgtgggtgatgttgccacttttcctttgaaaatgtacaatgagattagaagagttgaacatgttgatcattctcgcaaatctgctgagcaggctgtcaaggcaatatttgccagtgagcaagggaagtctgtcgatgaatatgactaccttccatacttctattcccgcgccttcgatttgtcttggcaattctacggtgataatgtgggtgaaacagtgctctttggggacgctgatcccaactctgcaactcacaagtttggacaatactggatcaaagatggaaagatcgttggtgcattcctcgagagtgggtcacctgaagagaacaaggcaattgctaaggttgcaaaggttcaaccccctgctaccttggatcaattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="-" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="80388" stop="77912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80087" g_stop="79989" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="123" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79988" i_stop="79852" i_length="137">
            <donor d_prob="0.689" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79851" g_stop="79733" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="242" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79732" i_stop="79649" i_length="84">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79648" g_stop="79523" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="368" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79522" i_stop="79089" i_length="434">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79088" g_stop="78948" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="509" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78947" i_stop="78498" i_length="450">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78497" g_stop="78212" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="795" r_length="286" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="-" ref_id="SGN-E697671" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80087" e_stop="79989"/>
          <exon e_start="79851" e_stop="79733"/>
          <exon e_start="79648" e_stop="79523"/>
          <exon e_start="79088" e_stop="78948"/>
          <exon e_start="78497" e_stop="78212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTGTTGTTGGGGGAGGGTACATCGGTCTCGAGCTTAGTGCTGTACTGAGACTGAACAACATTGAAGTCAATATGGTTTACCCAGAACCATGGTGCAGTAAGTAAATTGCGTTTAGTTTGCACACTGCATGCATAACATGAAATGTTACACTGTTTCATGGTAGTCTGTTATGGAGAATATATTGTCCTGCTTAATTGTATTGTTATCTTACTGTAATCCTTATGATTTTCCAGTGCCTCGGCTTTTCACAGAGGGCATAGCTGCGTTCTATGAAGGTTATTATAAAAACAAGGGAGTCAATATTATCAAGGGTACAGTGGCTGTTGGGTTTGATACCCATCCAAATGGAGAGGTTTTTCTCTAGACTCTACCATTTTGAGAAATCTGGTTGAGCTTTAGAGCATTACCTCACAGCATTCTTGTTTTGAATTTGCAGGTGAAGGAAGTCAAACTCAAAGATGGCAGAGTTTTGGAAGCTGACATAGTAGTCGTAGGAGTCGGAGCAAGACCACTCACAACTCTATTCAAAGGGCAAGTTGAAGAGGAGAAGGGTGGAATTAAGGTGTGCACTCACTGTTCAGTACTCATCCTTTTAATAAGTTCTGGCTTGCGTGCTTTTTGATAATTTTGTCATTTTCATGGTTAAACCTTTGAATTTGCAGTATAATGTACCAAAACAAATTAAATAGTTCAGTATAAGCTTCGAAAATAGAGGAGAGCAACTGGGATGATTTGTTGAAGGAACAGATCAATGTATTCCGGAAATTGTGGTGCTACTTTAGTCAATACAAAGAAATGAGCTAATTTTGCACATAAGAAATTGCATCAAATAGTGGAAATCAATGAACTTGTTTTATAGTTTCCATGTTGAACTAAAACTGTGTTCCTGTCAAGCTATAAGCTGTTTCTCCTATGTATCAGAATTACAATGGATTATGTCATGTTCCATTCAAAATGACACTATTCCTGTACTTACACCAAGGCTTTTTTTTGCAGACAGATGCGTTCTTCAAAACAAGTGTACCTGATGTATATGCTGTGGGTGATGTTGCCACTTTTCCTTTGAAAATGTACAATGAGATTAGAAGAGTTGAACATGTTGATCATTCTCGCAAATCTGCTGAGCAGGCTGTCAAGGTATGTGACAGCTCCCTGACGCTATCCAGAGTTGATATGGAAGTTTTATATGAAAGTTTTATATCGTCATCCTGCTTATAATATGTTGATTCTTTACTTGGTCAACCGTGATTGCTCTCATGAGTCATGATATAAACTGGATATTTGAACCACACTACACATGCAGATTAGGGTGTTCAAATACTGAAAACTATCTCCATTCTACATGCCTACTGATTGTTTATTGTCCTGGCATGAGTACAAATTTGTAACAATGCAACGTTAAATTACACTCACACAGCACACAGGTTATCTTTTGCTTCCACTGTGTGACTTATTAGAATAGCTTTCTGCAGTTTGCTAGTGTCTTTCTACTCTGTCAATCAACTCGGTCAAATGTAGTTACAAATTCTCATACTCCACATCTTCTTATGAAGTAAAAATGTTAATGTTACATTGTTGCTGGTGCAGGCAATATTTGCCAGTGAGCAAGGGAAGTCTGTCGATGAATATGACTACCTTCCATACTTCTATTCCCGCGCCTTCGATTTGTCTTGGCAATTCTACGGTGATAATGTGGGTGAAACAGTGCTCTTTGGGGACGCTGATCCCAACTCTGCAACTCACAAGTTTGGACAATACTGGATCAAAGATGGAAAGATCGTTGGTGCATTCCTCGAGAGTGGGTCACCTGAAGAGAACAAGGCAATTGCTAAGGTTGCAAAGGTTCAACCCCCTGCTACCTTGGATCAATTGG</genome_strand>
        <mrna_strand>CTGTTGTTGTTGGGGGAGGGTACATCGGTCTCGAGCTTAGTGCTGTACTGAGACTGAACAACATTGAAGTCAATATGGTTTACCCAGAACCATGGTGCA.........................................................................................................................................TGCCTCGGCTTTTCACAGAGGGCATAGCTGCGTTCTATGAAGGTTATTATAAAAACAAGGGAGTCAATATTATCAAGGGTACAGTGGCTGTTGGGTTTGATACCCATCCAAATGGAGAG....................................................................................GTGAAGGAAGTCAAACTCAAAGATGGCAGAGTTTTGGAAGCTGACATAGTAGTCGTAGGAGTCGGAGCAAGACCACTCACAACTCTATTCAAAGGGCAAGTTGAAGAGGAGAAGGGTGGAATTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGATGCGTTCTTCAAAACAAGTGTACCTGATGTATATGCTGTGGGTGATGTTGCCACTTTTCCTTTGAAAATGTACAATGAGATTAGAAGAGTTGAACATGTTGATCATTCTCGCAAATCTGCTGAGCAGGCTGTCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATATTTGCCAGTGAGCAAGGGAAGTCTGTCGATGAATATGACTACCTTCCATACTTCTATTCCCGCGCCTTCGATTTGTCTTGGCAATTCTACGGTGATAATGTGGGTGAAACAGTGCTCTTTGGGGACGCTGATCCCAACTCTGCAACTCACAAGTTTGGACAATACTGGATCAAAGATGGAAAGATCGTTGGTGCATTCCTCGAGAGTGGGTCACCTGAAGAGAACAAGGCAATTGCTAAGGTTGCAAAGGTTCAACCCCCTGCTACCTTGGATCAATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297953" ref_strand="+" ref_description="SGN-E297953 [cLET-38-J9]">
      <seq>agagggcatagctgcgttctatgaaggttattataaaaacaagggagtcaatattatcaagggtacagtggctgttgggtttgatacccatccaaatggagaggtgaaggaagtcaaactcaaagatggcagagttttggaagctgacatagtagtcgtaggagtcggagcaagaccactcacaactctattcaaagggcaagttgaagaggagaagggtggaattaagacagatgcgttcttcaaaacaagtgtacctgatgtatatgctgtgggtgatgttgccacttttcctttgaaaatgtacaatgagattagaagagttgaacatgttgatcattctcgcaaatctgctgagcaggctgtcaaggcaatatttgccagtgagcaagggaagtctgtcgatgaatatgactaccttccatacttctattcccgcgccttcgatttgtcttggcaattctacggtgataatgtgggtgaaacagtgctctttggggacgctgatcccaactctgcaactcacaagtttggacaatactggatcaaagatggaaagatcgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="-" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="80135" stop="78003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79835" g_stop="79733" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79732" i_stop="79649" i_length="84">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79648" g_stop="79523" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="229" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79522" i_stop="79089" i_length="434">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79088" g_stop="78948" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="370" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78947" i_stop="78498" i_length="450">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78497" g_stop="78303" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="565" r_length="195" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="-" ref_id="SGN-E297953" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79835" e_stop="79733"/>
          <exon e_start="79648" e_stop="79523"/>
          <exon e_start="79088" e_stop="78948"/>
          <exon e_start="78497" e_stop="78303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGGCATAGCTGCGTTCTATGAAGGTTATTATAAAAACAAGGGAGTCAATATTATCAAGGGTACAGTGGCTGTTGGGTTTGATACCCATCCAAATGGAGAGGTTTTTCTCTAGACTCTACCATTTTGAGAAATCTGGTTGAGCTTTAGAGCATTACCTCACAGCATTCTTGTTTTGAATTTGCAGGTGAAGGAAGTCAAACTCAAAGATGGCAGAGTTTTGGAAGCTGACATAGTAGTCGTAGGAGTCGGAGCAAGACCACTCACAACTCTATTCAAAGGGCAAGTTGAAGAGGAGAAGGGTGGAATTAAGGTGTGCACTCACTGTTCAGTACTCATCCTTTTAATAAGTTCTGGCTTGCGTGCTTTTTGATAATTTTGTCATTTTCATGGTTAAACCTTTGAATTTGCAGTATAATGTACCAAAACAAATTAAATAGTTCAGTATAAGCTTCGAAAATAGAGGAGAGCAACTGGGATGATTTGTTGAAGGAACAGATCAATGTATTCCGGAAATTGTGGTGCTACTTTAGTCAATACAAAGAAATGAGCTAATTTTGCACATAAGAAATTGCATCAAATAGTGGAAATCAATGAACTTGTTTTATAGTTTCCATGTTGAACTAAAACTGTGTTCCTGTCAAGCTATAAGCTGTTTCTCCTATGTATCAGAATTACAATGGATTATGTCATGTTCCATTCAAAATGACACTATTCCTGTACTTACACCAAGGCTTTTTTTTGCAGACAGATGCGTTCTTCAAAACAAGTGTACCTGATGTATATGCTGTGGGTGATGTTGCCACTTTTCCTTTGAAAATGTACAATGAGATTAGAAGAGTTGAACATGTTGATCATTCTCGCAAATCTGCTGAGCAGGCTGTCAAGGTATGTGACAGCTCCCTGACGCTATCCAGAGTTGATATGGAAGTTTTATATGAAAGTTTTATATCGTCATCCTGCTTATAATATGTTGATTCTTTACTTGGTCAACCGTGATTGCTCTCATGAGTCATGATATAAACTGGATATTTGAACCACACTACACATGCAGATTAGGGTGTTCAAATACTGAAAACTATCTCCATTCTACATGCCTACTGATTGTTTATTGTCCTGGCATGAGTACAAATTTGTAACAATGCAACGTTAAATTACACTCACACAGCACACAGGTTATCTTTTGCTTCCACTGTGTGACTTATTAGAATAGCTTTCTGCAGTTTGCTAGTGTCTTTCTACTCTGTCAATCAACTCGGTCAAATGTAGTTACAAATTCTCATACTCCACATCTTCTTATGAAGTAAAAATGTTAATGTTACATTGTTGCTGGTGCAGGCAATATTTGCCAGTGAGCAAGGGAAGTCTGTCGATGAATATGACTACCTTCCATACTTCTATTCCCGCGCCTTCGATTTGTCTTGGCAATTCTACGGTGATAATGTGGGTGAAACAGTGCTCTTTGGGGACGCTGATCCCAACTCTGCAACTCACAAGTTTGGACAATACTGGATCAAAGATGGAAAGATCGTT</genome_strand>
        <mrna_strand>AGAGGGCATAGCTGCGTTCTATGAAGGTTATTATAAAAACAAGGGAGTCAATATTATCAAGGGTACAGTGGCTGTTGGGTTTGATACCCATCCAAATGGAGAG....................................................................................GTGAAGGAAGTCAAACTCAAAGATGGCAGAGTTTTGGAAGCTGACATAGTAGTCGTAGGAGTCGGAGCAAGACCACTCACAACTCTATTCAAAGGGCAAGTTGAAGAGGAGAAGGGTGGAATTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGATGCGTTCTTCAAAACAAGTGTACCTGATGTATATGCTGTGGGTGATGTTGCCACTTTTCCTTTGAAAATGTACAATGAGATTAGAAGAGTTGAACATGTTGATCATTCTCGCAAATCTGCTGAGCAGGCTGTCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATATTTGCCAGTGAGCAAGGGAAGTCTGTCGATGAATATGACTACCTTCCATACTTCTATTCCCGCGCCTTCGATTTGTCTTGGCAATTCTACGGTGATAATGTGGGTGAAACAGTGCTCTTTGGGGACGCTGATCCCAACTCTGCAACTCACAAGTTTGGACAATACTGGATCAAAGATGGAAAGATCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289490" ref_strand="+" ref_description="SGN-E289490 [cLET-3-C15]">
      <seq>ggcatagctgcgttctatgaaggttattataaaaacaagggagtcaatattatcaagggtacagtggctgttgggtttgatacccatccaaatggagaggtgaaggaagtcaaactcaaagatggcagagttttggaagctgacatagtagtcgtaggagtcggagcaagaccactcacaactctattcaaagggcaagttgaagaggagaagggtggaattaagacagatgcgttcttcaaaacaagtgtacctgatgtatatgctgtgggtgatgttgccacttttcctttgaaaatgtacaatgagattagaagagttgaacatgttgatcattctcgcaaatctgctgagcaggctgtcaaggcaatatttgccagtgagcaagggaagtctgtcgatgaatatgactaccttccatacttctattcccgcgccttcgatttgtcttggcaattctacggtgataatgtgggtgaaacagtgctctttggggacgctgatcccaactctgcaactcacaagtttggacaatactggatcaaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="-" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="80131" stop="78015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79831" g_stop="79733" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79732" i_stop="79649" i_length="84">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79648" g_stop="79523" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="225" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79522" i_stop="79089" i_length="434">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79088" g_stop="78948" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="366" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78947" i_stop="78498" i_length="450">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78497" g_stop="78315" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="549" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="-" ref_id="SGN-E289490" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79831" e_stop="79733"/>
          <exon e_start="79648" e_stop="79523"/>
          <exon e_start="79088" e_stop="78948"/>
          <exon e_start="78497" e_stop="78315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATAGCTGCGTTCTATGAAGGTTATTATAAAAACAAGGGAGTCAATATTATCAAGGGTACAGTGGCTGTTGGGTTTGATACCCATCCAAATGGAGAGGTTTTTCTCTAGACTCTACCATTTTGAGAAATCTGGTTGAGCTTTAGAGCATTACCTCACAGCATTCTTGTTTTGAATTTGCAGGTGAAGGAAGTCAAACTCAAAGATGGCAGAGTTTTGGAAGCTGACATAGTAGTCGTAGGAGTCGGAGCAAGACCACTCACAACTCTATTCAAAGGGCAAGTTGAAGAGGAGAAGGGTGGAATTAAGGTGTGCACTCACTGTTCAGTACTCATCCTTTTAATAAGTTCTGGCTTGCGTGCTTTTTGATAATTTTGTCATTTTCATGGTTAAACCTTTGAATTTGCAGTATAATGTACCAAAACAAATTAAATAGTTCAGTATAAGCTTCGAAAATAGAGGAGAGCAACTGGGATGATTTGTTGAAGGAACAGATCAATGTATTCCGGAAATTGTGGTGCTACTTTAGTCAATACAAAGAAATGAGCTAATTTTGCACATAAGAAATTGCATCAAATAGTGGAAATCAATGAACTTGTTTTATAGTTTCCATGTTGAACTAAAACTGTGTTCCTGTCAAGCTATAAGCTGTTTCTCCTATGTATCAGAATTACAATGGATTATGTCATGTTCCATTCAAAATGACACTATTCCTGTACTTACACCAAGGCTTTTTTTTGCAGACAGATGCGTTCTTCAAAACAAGTGTACCTGATGTATATGCTGTGGGTGATGTTGCCACTTTTCCTTTGAAAATGTACAATGAGATTAGAAGAGTTGAACATGTTGATCATTCTCGCAAATCTGCTGAGCAGGCTGTCAAGGTATGTGACAGCTCCCTGACGCTATCCAGAGTTGATATGGAAGTTTTATATGAAAGTTTTATATCGTCATCCTGCTTATAATATGTTGATTCTTTACTTGGTCAACCGTGATTGCTCTCATGAGTCATGATATAAACTGGATATTTGAACCACACTACACATGCAGATTAGGGTGTTCAAATACTGAAAACTATCTCCATTCTACATGCCTACTGATTGTTTATTGTCCTGGCATGAGTACAAATTTGTAACAATGCAACGTTAAATTACACTCACACAGCACACAGGTTATCTTTTGCTTCCACTGTGTGACTTATTAGAATAGCTTTCTGCAGTTTGCTAGTGTCTTTCTACTCTGTCAATCAACTCGGTCAAATGTAGTTACAAATTCTCATACTCCACATCTTCTTATGAAGTAAAAATGTTAATGTTACATTGTTGCTGGTGCAGGCAATATTTGCCAGTGAGCAAGGGAAGTCTGTCGATGAATATGACTACCTTCCATACTTCTATTCCCGCGCCTTCGATTTGTCTTGGCAATTCTACGGTGATAATGTGGGTGAAACAGTGCTCTTTGGGGACGCTGATCCCAACTCTGCAACTCACAAGTTTGGACAATACTGGATCAAAGAT</genome_strand>
        <mrna_strand>GGCATAGCTGCGTTCTATGAAGGTTATTATAAAAACAAGGGAGTCAATATTATCAAGGGTACAGTGGCTGTTGGGTTTGATACCCATCCAAATGGAGAG....................................................................................GTGAAGGAAGTCAAACTCAAAGATGGCAGAGTTTTGGAAGCTGACATAGTAGTCGTAGGAGTCGGAGCAAGACCACTCACAACTCTATTCAAAGGGCAAGTTGAAGAGGAGAAGGGTGGAATTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGATGCGTTCTTCAAAACAAGTGTACCTGATGTATATGCTGTGGGTGATGTTGCCACTTTTCCTTTGAAAATGTACAATGAGATTAGAAGAGTTGAACATGTTGATCATTCTCGCAAATCTGCTGAGCAGGCTGTCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATATTTGCCAGTGAGCAAGGGAAGTCTGTCGATGAATATGACTACCTTCCATACTTCTATTCCCGCGCCTTCGATTTGTCTTGGCAATTCTACGGTGATAATGTGGGTGAAACAGTGCTCTTTGGGGACGCTGATCCCAACTCTGCAACTCACAAGTTTGGACAATACTGGATCAAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314570" ref_strand="+" ref_description="SGN-E314570 [cTOA-20-A14]">
      <seq>ctgattccaagaatatcttttacttgagagaaatcgatgatgctgatcaacttgtggaagcattaaaagctaagaaaaatggtaaagctgttgttgttgggggagggtacatcggtctcgagcttagtgctgtactgagactgaacaacattgaagtcaatatggtttacccagaaccatggtgcatgcctcggcttttcacagagggcatagctgcgttctatgaaggttattataaaaacaagggagtcaatattatcaagggtacagtggctgttgggtttgatacccatccaaatggagaggtgaaggaagtcaaactcaaagatggcagagttttggaagctgacatagtagtcgtaggagtcggagcaagaccactcacaactctattcaaagggcaagttgaagaggagaagggtggaattaagacagatgcgttcttcaaaacaagtgtacctgatgtatatgctgtgggtgatgttgccacttttcctttgaaaatgtacaatgagattagaagagttgaacatgttgatcattctcgcaaatctgctgagcaggctgtcaaggcaatatttgccagtgagcaagggaagtctgtcgatgaatatgactacctttcatacttctattcccgcgccttcgatttgtcttggcaattcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="-" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="80474" stop="78103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80174" g_stop="79989" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79988" i_stop="79852" i_length="137">
            <donor d_prob="0.689" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79851" g_stop="79733" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="305" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79732" i_stop="79649" i_length="84">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79648" g_stop="79523" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="431" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79522" i_stop="79089" i_length="434">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79088" g_stop="78948" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="572" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78947" i_stop="78498" i_length="450">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78497" g_stop="78403" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="667" r_length="95" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="-" ref_id="SGN-E314570" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80174" e_stop="79989"/>
          <exon e_start="79851" e_stop="79733"/>
          <exon e_start="79648" e_stop="79523"/>
          <exon e_start="79088" e_stop="78948"/>
          <exon e_start="78497" e_stop="78403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATTCCAAGAATATCTTTTACTTGAGAGAAATCGATGATGCTGATCAACTTGTGGAAGCATTAAAAGCTAAGAAAAATGGTAAAGCTGTTGTTGTTGGGGGAGGGTACATCGGTCTCGAGCTTAGTGCTGTACTGAGACTGAACAACATTGAAGTCAATATGGTTTACCCAGAACCATGGTGCAGTAAGTAAATTGCGTTTAGTTTGCACACTGCATGCATAACATGAAATGTTACACTGTTTCATGGTAGTCTGTTATGGAGAATATATTGTCCTGCTTAATTGTATTGTTATCTTACTGTAATCCTTATGATTTTCCAGTGCCTCGGCTTTTCACAGAGGGCATAGCTGCGTTCTATGAAGGTTATTATAAAAACAAGGGAGTCAATATTATCAAGGGTACAGTGGCTGTTGGGTTTGATACCCATCCAAATGGAGAGGTTTTTCTCTAGACTCTACCATTTTGAGAAATCTGGTTGAGCTTTAGAGCATTACCTCACAGCATTCTTGTTTTGAATTTGCAGGTGAAGGAAGTCAAACTCAAAGATGGCAGAGTTTTGGAAGCTGACATAGTAGTCGTAGGAGTCGGAGCAAGACCACTCACAACTCTATTCAAAGGGCAAGTTGAAGAGGAGAAGGGTGGAATTAAGGTGTGCACTCACTGTTCAGTACTCATCCTTTTAATAAGTTCTGGCTTGCGTGCTTTTTGATAATTTTGTCATTTTCATGGTTAAACCTTTGAATTTGCAGTATAATGTACCAAAACAAATTAAATAGTTCAGTATAAGCTTCGAAAATAGAGGAGAGCAACTGGGATGATTTGTTGAAGGAACAGATCAATGTATTCCGGAAATTGTGGTGCTACTTTAGTCAATACAAAGAAATGAGCTAATTTTGCACATAAGAAATTGCATCAAATAGTGGAAATCAATGAACTTGTTTTATAGTTTCCATGTTGAACTAAAACTGTGTTCCTGTCAAGCTATAAGCTGTTTCTCCTATGTATCAGAATTACAATGGATTATGTCATGTTCCATTCAAAATGACACTATTCCTGTACTTACACCAAGGCTTTTTTTTGCAGACAGATGCGTTCTTCAAAACAAGTGTACCTGATGTATATGCTGTGGGTGATGTTGCCACTTTTCCTTTGAAAATGTACAATGAGATTAGAAGAGTTGAACATGTTGATCATTCTCGCAAATCTGCTGAGCAGGCTGTCAAGGTATGTGACAGCTCCCTGACGCTATCCAGAGTTGATATGGAAGTTTTATATGAAAGTTTTATATCGTCATCCTGCTTATAATATGTTGATTCTTTACTTGGTCAACCGTGATTGCTCTCATGAGTCATGATATAAACTGGATATTTGAACCACACTACACATGCAGATTAGGGTGTTCAAATACTGAAAACTATCTCCATTCTACATGCCTACTGATTGTTTATTGTCCTGGCATGAGTACAAATTTGTAACAATGCAACGTTAAATTACACTCACACAGCACACAGGTTATCTTTTGCTTCCACTGTGTGACTTATTAGAATAGCTTTCTGCAGTTTGCTAGTGTCTTTCTACTCTGTCAATCAACTCGGTCAAATGTAGTTACAAATTCTCATACTCCACATCTTCTTATGAAGTAAAAATGTTAATGTTACATTGTTGCTGGTGCAGGCAATATTTGCCAGTGAGCAAGGGAAGTCTGTCGATGAATATGACTACCTTCCATACTTCTATTCCCGCGCCTTCGATTTGTCTTGGCAATTCTA</genome_strand>
        <mrna_strand>CTGATTCCAAGAATATCTTTTACTTGAGAGAAATCGATGATGCTGATCAACTTGTGGAAGCATTAAAAGCTAAGAAAAATGGTAAAGCTGTTGTTGTTGGGGGAGGGTACATCGGTCTCGAGCTTAGTGCTGTACTGAGACTGAACAACATTGAAGTCAATATGGTTTACCCAGAACCATGGTGCA.........................................................................................................................................TGCCTCGGCTTTTCACAGAGGGCATAGCTGCGTTCTATGAAGGTTATTATAAAAACAAGGGAGTCAATATTATCAAGGGTACAGTGGCTGTTGGGTTTGATACCCATCCAAATGGAGAG....................................................................................GTGAAGGAAGTCAAACTCAAAGATGGCAGAGTTTTGGAAGCTGACATAGTAGTCGTAGGAGTCGGAGCAAGACCACTCACAACTCTATTCAAAGGGCAAGTTGAAGAGGAGAAGGGTGGAATTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGATGCGTTCTTCAAAACAAGTGTACCTGATGTATATGCTGTGGGTGATGTTGCCACTTTTCCTTTGAAAATGTACAATGAGATTAGAAGAGTTGAACATGTTGATCATTCTCGCAAATCTGCTGAGCAGGCTGTCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATATTTGCCAGTGAGCAAGGGAAGTCTGTCGATGAATATGACTACCTTTCATACTTCTATTCCCGCGCCTTCGATTTGTCTTGGCAATTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705641" ref_strand="+" ref_description="SGN-E705641 [FA27CH10]">
      <seq>ggagagagacagcttcctgagtggtatgcagagaaaggcatttcgttgatcctgagtactgaaatagtgaaagcagatcttgcttcaaagactcttgttagtgcagctggggaatcttttaaatatcaaacacttgttattgcaacaggatccaccgttttgaagttgtcagattttggtgtacaaggtgctgattccaagaatatcttttacttgagagaaatcgatgatgctgatcaacttgtggaagcattaaaagctaagaaaaatggtaaagctgttgttgttgggggagggtacatcggtctcgagcttagtgctgtactgagactgaacaacattgaagtcaatatggtttacccagaaccatggtgcatgcctcggcttttcacagagggcatagctgcgttctatgaaggttattataaaaacaagggagtcaatattatcaagggtacagtggctgttgggtttgatacccatccaaatggagaggtgaaggaagtcaaactcaaagatggcagagttttggaagctgacatagtagccgtaggagtcggagcaagaccactcacaactctattcaaagggcaagttgaagaggagaagggtggaattaagacagatgcgttcttcaaaacaagtgtacctgatgtatatgctgtgggtgatgttgccacttttcctttgaaaatgtacaatgagattagaagagttgaacatgttgatcattctcgcaaatctgctgagcaggctgtcaaggcaatatttgccagtgagcaagggaagtctgtcgatgaatatgactaccttccatacttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="-" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="80880" stop="78137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80580" g_stop="80544" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80543" i_stop="80414" i_length="130">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80413" g_stop="80295" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="156" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80294" i_stop="80209" i_length="86">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80208" g_stop="79989" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="376" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79988" i_stop="79852" i_length="137">
            <donor d_prob="0.689" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79851" g_stop="79733" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="495" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79732" i_stop="79649" i_length="84">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79648" g_stop="79523" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="621" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79522" i_stop="79089" i_length="434">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79088" g_stop="78948" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="762" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="78947" i_stop="78498" i_length="450">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="78497" g_stop="78437" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="763" r_stop="823" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="-" ref_id="SGN-E705641" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80580" e_stop="80544"/>
          <exon e_start="80413" e_stop="80295"/>
          <exon e_start="80208" e_stop="79989"/>
          <exon e_start="79851" e_stop="79733"/>
          <exon e_start="79648" e_stop="79523"/>
          <exon e_start="79088" e_stop="78948"/>
          <exon e_start="78497" e_stop="78437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAGAGACAGCTTCCTGAGTGGTATGCAGAGAAAGGTAAATAGTCTCTGTGTTTAAGCAATTATTTGCAGACATATGGCCATGCATGACTTCTGTTAACTTTACATATGGTGGTATATCTGGTTGAAGACACATCTCTTATGAATCATCTGGTCTCATCTTGTAGGCATTTCGTTGATCCTGAGTACTGAAATAGTGAAAGCAGATCTTGCTTCAAAGACTCTTGTTAGTGCAGCTGGGGAATCTTTTAAATATCAAACACTTGTTATTGCAACAGGATCCACCGTGAGTCTCTTGGAAACGTGGTTGTGTTGTTTAATTTAAAAATTTTCTTTGGTCATTAGATTAATTTATTGTTTGTGTCTATTCAGGTTTTGAAGTTGTCAGATTTTGGTGTACAAGGTGCTGATTCCAAGAATATCTTTTACTTGAGAGAAATCGATGATGCTGATCAACTTGTGGAAGCATTAAAAGCTAAGAAAAATGGTAAAGCTGTTGTTGTTGGGGGAGGGTACATCGGTCTCGAGCTTAGTGCTGTACTGAGACTGAACAACATTGAAGTCAATATGGTTTACCCAGAACCATGGTGCAGTAAGTAAATTGCGTTTAGTTTGCACACTGCATGCATAACATGAAATGTTACACTGTTTCATGGTAGTCTGTTATGGAGAATATATTGTCCTGCTTAATTGTATTGTTATCTTACTGTAATCCTTATGATTTTCCAGTGCCTCGGCTTTTCACAGAGGGCATAGCTGCGTTCTATGAAGGTTATTATAAAAACAAGGGAGTCAATATTATCAAGGGTACAGTGGCTGTTGGGTTTGATACCCATCCAAATGGAGAGGTTTTTCTCTAGACTCTACCATTTTGAGAAATCTGGTTGAGCTTTAGAGCATTACCTCACAGCATTCTTGTTTTGAATTTGCAGGTGAAGGAAGTCAAACTCAAAGATGGCAGAGTTTTGGAAGCTGACATAGTAGTCGTAGGAGTCGGAGCAAGACCACTCACAACTCTATTCAAAGGGCAAGTTGAAGAGGAGAAGGGTGGAATTAAGGTGTGCACTCACTGTTCAGTACTCATCCTTTTAATAAGTTCTGGCTTGCGTGCTTTTTGATAATTTTGTCATTTTCATGGTTAAACCTTTGAATTTGCAGTATAATGTACCAAAACAAATTAAATAGTTCAGTATAAGCTTCGAAAATAGAGGAGAGCAACTGGGATGATTTGTTGAAGGAACAGATCAATGTATTCCGGAAATTGTGGTGCTACTTTAGTCAATACAAAGAAATGAGCTAATTTTGCACATAAGAAATTGCATCAAATAGTGGAAATCAATGAACTTGTTTTATAGTTTCCATGTTGAACTAAAACTGTGTTCCTGTCAAGCTATAAGCTGTTTCTCCTATGTATCAGAATTACAATGGATTATGTCATGTTCCATTCAAAATGACACTATTCCTGTACTTACACCAAGGCTTTTTTTTGCAGACAGATGCGTTCTTCAAAACAAGTGTACCTGATGTATATGCTGTGGGTGATGTTGCCACTTTTCCTTTGAAAATGTACAATGAGATTAGAAGAGTTGAACATGTTGATCATTCTCGCAAATCTGCTGAGCAGGCTGTCAAGGTATGTGACAGCTCCCTGACGCTATCCAGAGTTGATATGGAAGTTTTATATGAAAGTTTTATATCGTCATCCTGCTTATAATATGTTGATTCTTTACTTGGTCAACCGTGATTGCTCTCATGAGTCATGATATAAACTGGATATTTGAACCACACTACACATGCAGATTAGGGTGTTCAAATACTGAAAACTATCTCCATTCTACATGCCTACTGATTGTTTATTGTCCTGGCATGAGTACAAATTTGTAACAATGCAACGTTAAATTACACTCACACAGCACACAGGTTATCTTTTGCTTCCACTGTGTGACTTATTAGAATAGCTTTCTGCAGTTTGCTAGTGTCTTTCTACTCTGTCAATCAACTCGGTCAAATGTAGTTACAAATTCTCATACTCCACATCTTCTTATGAAGTAAAAATGTTAATGTTACATTGTTGCTGGTGCAGGCAATATTTGCCAGTGAGCAAGGGAAGTCTGTCGATGAATATGACTACCTTCCATACTTCT</genome_strand>
        <mrna_strand>GGAGAGAGACAGCTTCCTGAGTGGTATGCAGAGAAAG..................................................................................................................................GCATTTCGTTGATCCTGAGTACTGAAATAGTGAAAGCAGATCTTGCTTCAAAGACTCTTGTTAGTGCAGCTGGGGAATCTTTTAAATATCAAACACTTGTTATTGCAACAGGATCCACC......................................................................................GTTTTGAAGTTGTCAGATTTTGGTGTACAAGGTGCTGATTCCAAGAATATCTTTTACTTGAGAGAAATCGATGATGCTGATCAACTTGTGGAAGCATTAAAAGCTAAGAAAAATGGTAAAGCTGTTGTTGTTGGGGGAGGGTACATCGGTCTCGAGCTTAGTGCTGTACTGAGACTGAACAACATTGAAGTCAATATGGTTTACCCAGAACCATGGTGCA.........................................................................................................................................TGCCTCGGCTTTTCACAGAGGGCATAGCTGCGTTCTATGAAGGTTATTATAAAAACAAGGGAGTCAATATTATCAAGGGTACAGTGGCTGTTGGGTTTGATACCCATCCAAATGGAGAG....................................................................................GTGAAGGAAGTCAAACTCAAAGATGGCAGAGTTTTGGAAGCTGACATAGTAGCCGTAGGAGTCGGAGCAAGACCACTCACAACTCTATTCAAAGGGCAAGTTGAAGAGGAGAAGGGTGGAATTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGATGCGTTCTTCAAAACAAGTGTACCTGATGTATATGCTGTGGGTGATGTTGCCACTTTTCCTTTGAAAATGTACAATGAGATTAGAAGAGTTGAACATGTTGATCATTCTCGCAAATCTGCTGAGCAGGCTGTCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATATTTGCCAGTGAGCAAGGGAAGTCTGTCGATGAATATGACTACCTTCCATACTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E267330" ref_strand="+" ref_description="SGN-E267330 [cLEI-17-O1]">
      <seq>aaaagctaagaaaaatggtaaagctgttgttgttgggggagggtacatcggtctcgagcttagtgctgtactgagactgaacaacattgaagtcaatatggtttacccagaaccatggtgcatgcctcggcttttcacagagggcatagctgcgttctatgaaggttattataaaaacaagggagtcaatattatcaagggtacagtggctgttgggtttgatacccatccaaatggagaggtgaaggaagtcaaactcaaagatggcagagttttggaagctgacatagtagtcgtaggagtcggagcaagaccactcacaactctattcaaagggcaagttgaagaggagaagggtggaattaagacagatgcgttcttcaaaacaagtgtacctgatgtatatgctgtgggtgatgttgccacttttcctttgaaaatgtacaatgagattagaagagttgaacatgttgatcattctcgcaaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="-" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="80410" stop="78666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80110" g_stop="79989" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79988" i_stop="79852" i_length="137">
            <donor d_prob="0.689" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79851" g_stop="79733" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="241" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79732" i_stop="79649" i_length="84">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79648" g_stop="79523" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="367" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79522" i_stop="79089" i_length="434">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79088" g_stop="78966" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="490" r_length="123" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="-" ref_id="SGN-E267330" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80110" e_stop="79989"/>
          <exon e_start="79851" e_stop="79733"/>
          <exon e_start="79648" e_stop="79523"/>
          <exon e_start="79088" e_stop="78966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCTAAGAAAAATGGTAAAGCTGTTGTTGTTGGGGGAGGGTACATCGGTCTCGAGCTTAGTGCTGTACTGAGACTGAACAACATTGAAGTCAATATGGTTTACCCAGAACCATGGTGCAGTAAGTAAATTGCGTTTAGTTTGCACACTGCATGCATAACATGAAATGTTACACTGTTTCATGGTAGTCTGTTATGGAGAATATATTGTCCTGCTTAATTGTATTGTTATCTTACTGTAATCCTTATGATTTTCCAGTGCCTCGGCTTTTCACAGAGGGCATAGCTGCGTTCTATGAAGGTTATTATAAAAACAAGGGAGTCAATATTATCAAGGGTACAGTGGCTGTTGGGTTTGATACCCATCCAAATGGAGAGGTTTTTCTCTAGACTCTACCATTTTGAGAAATCTGGTTGAGCTTTAGAGCATTACCTCACAGCATTCTTGTTTTGAATTTGCAGGTGAAGGAAGTCAAACTCAAAGATGGCAGAGTTTTGGAAGCTGACATAGTAGTCGTAGGAGTCGGAGCAAGACCACTCACAACTCTATTCAAAGGGCAAGTTGAAGAGGAGAAGGGTGGAATTAAGGTGTGCACTCACTGTTCAGTACTCATCCTTTTAATAAGTTCTGGCTTGCGTGCTTTTTGATAATTTTGTCATTTTCATGGTTAAACCTTTGAATTTGCAGTATAATGTACCAAAACAAATTAAATAGTTCAGTATAAGCTTCGAAAATAGAGGAGAGCAACTGGGATGATTTGTTGAAGGAACAGATCAATGTATTCCGGAAATTGTGGTGCTACTTTAGTCAATACAAAGAAATGAGCTAATTTTGCACATAAGAAATTGCATCAAATAGTGGAAATCAATGAACTTGTTTTATAGTTTCCATGTTGAACTAAAACTGTGTTCCTGTCAAGCTATAAGCTGTTTCTCCTATGTATCAGAATTACAATGGATTATGTCATGTTCCATTCAAAATGACACTATTCCTGTACTTACACCAAGGCTTTTTTTTGCAGACAGATGCGTTCTTCAAAACAAGTGTACCTGATGTATATGCTGTGGGTGATGTTGCCACTTTTCCTTTGAAAATGTACAATGAGATTAGAAGAGTTGAACATGTTGATCATTCTCGCAAATCT</genome_strand>
        <mrna_strand>AAAAGCTAAGAAAAATGGTAAAGCTGTTGTTGTTGGGGGAGGGTACATCGGTCTCGAGCTTAGTGCTGTACTGAGACTGAACAACATTGAAGTCAATATGGTTTACCCAGAACCATGGTGCA.........................................................................................................................................TGCCTCGGCTTTTCACAGAGGGCATAGCTGCGTTCTATGAAGGTTATTATAAAAACAAGGGAGTCAATATTATCAAGGGTACAGTGGCTGTTGGGTTTGATACCCATCCAAATGGAGAG....................................................................................GTGAAGGAAGTCAAACTCAAAGATGGCAGAGTTTTGGAAGCTGACATAGTAGTCGTAGGAGTCGGAGCAAGACCACTCACAACTCTATTCAAAGGGCAAGTTGAAGAGGAGAAGGGTGGAATTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGATGCGTTCTTCAAAACAAGTGTACCTGATGTATATGCTGTGGGTGATGTTGCCACTTTTCCTTTGAAAATGTACAATGAGATTAGAAGAGTTGAACATGTTGATCATTCTCGCAAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700800" ref_strand="+" ref_description="SGN-E700800 [FA14AG11]">
      <seq>ctctatctattttcactgtgaaagttcatcaatggcggagaaatcattcaagtatgtgatcgtcggtggcggtgtttctgctgggtatgctgctagagaatttgccaaacagggagttaagcctggggaactggctattatttccaaagaggcagtggctccttatgaacgtcctgcacttagcaaggcatacctttttcctgaaggagctgctagactcccaggatttcatgtgtgtgttggaagtggaggagagagacagcttcctgagtggtatgcagagaaaggcatttcgttgatcctgagtactgaaatagtgaaagcagatcttgcttcaaagactcttgttagtgcagctggggaatcttttaaatatcaaacacttgttattgcaacaggatccaccgttttgaagttgtcagattttggtgtacaaggtgctgattccaagaatatcttttacttgagagaaatcgatgatgctgatcaacttgtggaagcattaaaagctaagaaaaatggtaaagctgttgttgttgggggagggtacatcggtctcgagcttagtgctgtactgagactgaacaacattgaagtcaatatggtttacccagaaccatggtgcatgcctcggcttttcacagagggcatagctgcgttctatgaaggttattataaaaacaagggagtcaatattatcaagggtacagtggctgttgggtttgatacccatccaaatggagaggtgaaggaagtcaaactcaaagatggcagagttttggaagctgacatagtagtcgtaggagtcggagcaagaccactcacaactctattcaaagggcaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="-" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="83304" stop="79248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83004" g_stop="82923" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82922" i_stop="81651" i_length="1272">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81650" g_stop="81579" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="154" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81578" i_stop="81041" i_length="538">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81040" g_stop="80989" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="206" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80988" i_stop="80625" i_length="364">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.698" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80624" g_stop="80544" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="287" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80543" i_stop="80414" i_length="130">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80413" g_stop="80295" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="406" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80294" i_stop="80209" i_length="86">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80208" g_stop="79989" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="626" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="79988" i_stop="79852" i_length="137">
            <donor d_prob="0.689" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="79851" g_stop="79733" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="745" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="79732" i_stop="79649" i_length="84">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="79648" g_stop="79548" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="746" r_stop="846" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="-" ref_id="SGN-E700800" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>846</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83004" e_stop="82923"/>
          <exon e_start="81650" e_stop="81579"/>
          <exon e_start="81040" e_stop="80989"/>
          <exon e_start="80624" e_stop="80544"/>
          <exon e_start="80413" e_stop="80295"/>
          <exon e_start="80208" e_stop="79989"/>
          <exon e_start="79851" e_stop="79733"/>
          <exon e_start="79648" e_stop="79548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTAACTATTTTCACTGTGAAAGTTCATCAATGGCGGAGAAATCATTCAAGTATGTGATCGTCGGTGGCGGTGTTTCTGCTGTGAGTATTTACCGATCGTCAAATTTAGCTTTATTTATGATTTTTTTGTTCAATAGACTTTAGTTTCTTAGCTTACATGTTTGATTTGAGTTCGGAATTGCGGAATTCGTGTTCTAGTTTTTTTTTTTTTTTGATGATTTTCCGGTGAGAATTATTCGATGTGATGTATAGTTTACAATAGATCTGAAAGTTAGCATAGTGAAATGGCGTTTCGGTTCCTGCATCTGTACATATACACACTGATAAATATTAAGATATAGAAGTTATTTTTTTAAGGATAACTGAGAGAGACAGTGTGGTGCACGGTTCTGTACAAACGTAAATTCATGTATTTTTAGTTTTACTTAATATTTTGATAGTCAACTGTTAGATTATGGAGTTTGAAAGCGAGAATTATTTCCATTTAGTGTTTCAATCTGCTGTGGAATGGTTGATTTGCTTAGGAATGGAGTTAGATCAGAGATGCTTTCAATACGAAGTGATATATTGAGACGGATACACGTGCTCGTATACATCCTTGTGTGTGTGTGTGTTTGTGTTACTTTATTCTTCATTTCAGTTGTTAGATTTTGGAGAGTGATAGCTAGAGTATTGTTGTAGGTAAGCTTATATCCCTTCATTGTTTTGGCTTAATTGTTGAAATGAGTCATTTAGAAATGGAGTTTGGAGGGTTTGAGTACGAAGTGATTTGAAAATGTAGAACCTACTAGTTGTCTAGTTGAGATATTGGGAGGAAGAGATCATGGCATACTTATTGCTATTTACTTTGGATGGTTATAACCAGTTGACACAAAATTTAATGTGATTTGATGAGTTAAAGTATCCCAGTCTCCTCTATTTTGTCCTTTGGCTTAGAAATTGTAGATATCTTCGAATGGTTGGGTAATGAACTCTAAATCTTTCATTAGAATATTGTAACTGGCATATAAGTTCCCTAATTTGTCATTCCTCTTATTTGGGATAACTAATGATTAGGATTCTAGTAGAGATATGTATTGCTACTTCTGCCCACGAATTATTTCTTTGTTTGTATAGAAGATTCCTTTTTGTATTTACTGTAACTGTACGTTTCGTTTTTCCGTGGTATTGACAAAGAGGCTACGTTTACCTCTTTCCCTAGGATGTGGAAAAAGATTTATTAGGAACTAGCTGAAATAAAGGATTATAGTTTTGTTTCTGAAATCTTGTAGGAACAAATCTTCTTGTTTATGCATTCAACTTTTTTGAATTCGTGTTCGTAAATGAATTTAACAAGTTTGGTTGCATTTGCAGGGGTATGCTGCTAGAGAATTTGCCAAACAGGGAGTTAAGCCTGGGGAACTGGCTATTATTTCCAAAGAGGCAGTAAGTATTTTGTACTGCTTTCTTGCCTTCACTAATTTAATATTAGATACTAGTTGCATTTCTGCTTGTGTGGACTTCATTTTGGAAAAGGGATCATTTGTTTTGTTTTCTGTAAATATTGTATCATTGGTCTCTAGAGTTATATAAGAATCTCTAAGTTCTGTGGTTGATGTTATAAGCTAATTTTTCATCAGCTAATACTTGTAAATTTCCTGAAAGTACATTCATGATTCCTTAGCTAATATTGTTAAATTCCCTTTGATATATTCTTGTCTATTTGGATAGGAAAAGTGTCTTGGTACTCTACGATTTGCTTGTAAATTTGTACTAATCTTCCCAAAACGAGTTCTGATCACACCTCTGTTGTCCCTAGTGTGTTAGGCTATGCCTATCTTTCTCTCTCTTTGGTTGATTTTTTTTTGCAACTTATCTACTCTTATGTCCATTCTTTCCTGTTTTACATCTAACAATCTTTCCTTCTTTCAGGAAAATAATGTTAGATTTGATCTGATTGCTAAAAAGTTTTTTTCTACCTCAGGTGGCTCCTTATGAACGTCCTGCACTTAGCAAGGCATACCTTTTTCCTGAAGGCAAGTCTTCTTTTTTCCTTGGATAGTTAATTTTGACTTCCGTAAGTGGTAATGTGGATGTGGACTTGAATAAAAGTCTTATTATGGAAAATGCATATCATCTTTATTTGTAGTTAAAGTCCTTGCAGACACATTTGAAAATATATCTCAACTTTTCTTGTAGAAAGATCATTGCTTGTCCTACTAGCAAAGAAAAAAAATGAAAAAAGAAAAACAATTTGAGCATGATTTATTTTACAGAATGTCATCTCATGTAGTTTTGTCACAAATTGCCAAGTCAAAAAGCTGCTGTACTTTTTAAACATTTGAAATTGACCTGGTATCATAAAATCTTTTCCCTAACACATATCCGTTGATCTACCAGGAGCTGCTAGACTCCCAGGATTTCATGTGTGTGTTGGAAGTGGAGGAGAGAGACAGCTTCCTGAGTGGTATGCAGAGAAAGGTAAATAGTCTCTGTGTTTAAGCAATTATTTGCAGACATATGGCCATGCATGACTTCTGTTAACTTTACATATGGTGGTATATCTGGTTGAAGACACATCTCTTATGAATCATCTGGTCTCATCTTGTAGGCATTTCGTTGATCCTGAGTACTGAAATAGTGAAAGCAGATCTTGCTTCAAAGACTCTTGTTAGTGCAGCTGGGGAATCTTTTAAATATCAAACACTTGTTATTGCAACAGGATCCACCGTGAGTCTCTTGGAAACGTGGTTGTGTTGTTTAATTTAAAAATTTTCTTTGGTCATTAGATTAATTTATTGTTTGTGTCTATTCAGGTTTTGAAGTTGTCAGATTTTGGTGTACAAGGTGCTGATTCCAAGAATATCTTTTACTTGAGAGAAATCGATGATGCTGATCAACTTGTGGAAGCATTAAAAGCTAAGAAAAATGGTAAAGCTGTTGTTGTTGGGGGAGGGTACATCGGTCTCGAGCTTAGTGCTGTACTGAGACTGAACAACATTGAAGTCAATATGGTTTACCCAGAACCATGGTGCAGTAAGTAAATTGCGTTTAGTTTGCACACTGCATGCATAACATGAAATGTTACACTGTTTCATGGTAGTCTGTTATGGAGAATATATTGTCCTGCTTAATTGTATTGTTATCTTACTGTAATCCTTATGATTTTCCAGTGCCTCGGCTTTTCACAGAGGGCATAGCTGCGTTCTATGAAGGTTATTATAAAAACAAGGGAGTCAATATTATCAAGGGTACAGTGGCTGTTGGGTTTGATACCCATCCAAATGGAGAGGTTTTTCTCTAGACTCTACCATTTTGAGAAATCTGGTTGAGCTTTAGAGCATTACCTCACAGCATTCTTGTTTTGAATTTGCAGGTGAAGGAAGTCAAACTCAAAGATGGCAGAGTTTTGGAAGCTGACATAGTAGTCGTAGGAGTCGGAGCAAGACCACTCACAACTCTATTCAAAGGGCAAGT</genome_strand>
        <mrna_strand>CTCTATCTATTTTCACTGTGAAAGTTCATCAATGGCGGAGAAATCATTCAAGTATGTGATCGTCGGTGGCGGTGTTTCTGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTATGCTGCTAGAGAATTTGCCAAACAGGGAGTTAAGCCTGGGGAACTGGCTATTATTTCCAAAGAGGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTCCTTATGAACGTCCTGCACTTAGCAAGGCATACCTTTTTCCTGAAG............................................................................................................................................................................................................................................................................................................................................................................GAGCTGCTAGACTCCCAGGATTTCATGTGTGTGTTGGAAGTGGAGGAGAGAGACAGCTTCCTGAGTGGTATGCAGAGAAAG..................................................................................................................................GCATTTCGTTGATCCTGAGTACTGAAATAGTGAAAGCAGATCTTGCTTCAAAGACTCTTGTTAGTGCAGCTGGGGAATCTTTTAAATATCAAACACTTGTTATTGCAACAGGATCCACC......................................................................................GTTTTGAAGTTGTCAGATTTTGGTGTACAAGGTGCTGATTCCAAGAATATCTTTTACTTGAGAGAAATCGATGATGCTGATCAACTTGTGGAAGCATTAAAAGCTAAGAAAAATGGTAAAGCTGTTGTTGTTGGGGGAGGGTACATCGGTCTCGAGCTTAGTGCTGTACTGAGACTGAACAACATTGAAGTCAATATGGTTTACCCAGAACCATGGTGCA.........................................................................................................................................TGCCTCGGCTTTTCACAGAGGGCATAGCTGCGTTCTATGAAGGTTATTATAAAAACAAGGGAGTCAATATTATCAAGGGTACAGTGGCTGTTGGGTTTGATACCCATCCAAATGGAGAG....................................................................................GTGAAGGAAGTCAAACTCAAAGATGGCAGAGTTTTGGAAGCTGACATAGTAGTCGTAGGAGTCGGAGCAAGACCACTCACAACTCTATTCAAAGGGCAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E709085" ref_strand="+" ref_description="SGN-E709085 [FA42CF05]">
      <seq>ccggtagttaagcctggggaactggctattatttccaaagaggcagtggctccttatgaacgtcctgcacttagcaaggcatacctttttcctgaaggagctgctagactcccaggatttcatgtgtgtgttggaagtggaggagagagacagcttcctgagtggtatgcagagaaaggcatttcgttgatcctgagtactgaaatagtgaaagcagatcttgcttcaaagactcttgttagtgcagctggggaatcttttaaatatcaaacacttgttattgcaacaggatccaccgttttgaagttgtcagattttggtgtacaaggtgctgattccaagaatatcttttacttgagagaaatcgatgatgctgatcaacttgtggaagcattaaaagctaagaaaaatggtaaagctgttgttgttgggggagggtacatcggtctcgagcttagtgctgtactgagactgaacaacattgaagtcaatatggtttacccagaaccatggtgcatgcctcggcttttcacagagggcatagctgcgttctatgaaggttattataaaaacaagggagtcaatattatcaagggtacagtggctgttgggtttgatacccatccaaatggagaggtgaaggaagtcaaactcaaagatggcagagttttggaagctgacatagtagtcgtaagagtcggagcaagaccactcacaactctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="-" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="81923" stop="79261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81623" g_stop="81579" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81578" i_stop="81041" i_length="538">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81040" g_stop="80989" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="97" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80988" i_stop="80625" i_length="364">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.698" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80624" g_stop="80544" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="178" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80543" i_stop="80414" i_length="130">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80413" g_stop="80295" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="297" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80294" i_stop="80209" i_length="86">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80208" g_stop="79989" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="517" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79988" i_stop="79852" i_length="137">
            <donor d_prob="0.689" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79851" g_stop="79733" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="636" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="79732" i_stop="79649" i_length="84">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="79648" g_stop="79561" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="724" r_length="88" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="-" ref_id="SGN-E709085" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81623" e_stop="81579"/>
          <exon e_start="81040" e_stop="80989"/>
          <exon e_start="80624" e_stop="80544"/>
          <exon e_start="80413" e_stop="80295"/>
          <exon e_start="80208" e_stop="79989"/>
          <exon e_start="79851" e_stop="79733"/>
          <exon e_start="79648" e_stop="79561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGAGTTAAGCCTGGGGAACTGGCTATTATTTCCAAAGAGGCAGTAAGTATTTTGTACTGCTTTCTTGCCTTCACTAATTTAATATTAGATACTAGTTGCATTTCTGCTTGTGTGGACTTCATTTTGGAAAAGGGATCATTTGTTTTGTTTTCTGTAAATATTGTATCATTGGTCTCTAGAGTTATATAAGAATCTCTAAGTTCTGTGGTTGATGTTATAAGCTAATTTTTCATCAGCTAATACTTGTAAATTTCCTGAAAGTACATTCATGATTCCTTAGCTAATATTGTTAAATTCCCTTTGATATATTCTTGTCTATTTGGATAGGAAAAGTGTCTTGGTACTCTACGATTTGCTTGTAAATTTGTACTAATCTTCCCAAAACGAGTTCTGATCACACCTCTGTTGTCCCTAGTGTGTTAGGCTATGCCTATCTTTCTCTCTCTTTGGTTGATTTTTTTTTGCAACTTATCTACTCTTATGTCCATTCTTTCCTGTTTTACATCTAACAATCTTTCCTTCTTTCAGGAAAATAATGTTAGATTTGATCTGATTGCTAAAAAGTTTTTTTCTACCTCAGGTGGCTCCTTATGAACGTCCTGCACTTAGCAAGGCATACCTTTTTCCTGAAGGCAAGTCTTCTTTTTTCCTTGGATAGTTAATTTTGACTTCCGTAAGTGGTAATGTGGATGTGGACTTGAATAAAAGTCTTATTATGGAAAATGCATATCATCTTTATTTGTAGTTAAAGTCCTTGCAGACACATTTGAAAATATATCTCAACTTTTCTTGTAGAAAGATCATTGCTTGTCCTACTAGCAAAGAAAAAAAATGAAAAAAGAAAAACAATTTGAGCATGATTTATTTTACAGAATGTCATCTCATGTAGTTTTGTCACAAATTGCCAAGTCAAAAAGCTGCTGTACTTTTTAAACATTTGAAATTGACCTGGTATCATAAAATCTTTTCCCTAACACATATCCGTTGATCTACCAGGAGCTGCTAGACTCCCAGGATTTCATGTGTGTGTTGGAAGTGGAGGAGAGAGACAGCTTCCTGAGTGGTATGCAGAGAAAGGTAAATAGTCTCTGTGTTTAAGCAATTATTTGCAGACATATGGCCATGCATGACTTCTGTTAACTTTACATATGGTGGTATATCTGGTTGAAGACACATCTCTTATGAATCATCTGGTCTCATCTTGTAGGCATTTCGTTGATCCTGAGTACTGAAATAGTGAAAGCAGATCTTGCTTCAAAGACTCTTGTTAGTGCAGCTGGGGAATCTTTTAAATATCAAACACTTGTTATTGCAACAGGATCCACCGTGAGTCTCTTGGAAACGTGGTTGTGTTGTTTAATTTAAAAATTTTCTTTGGTCATTAGATTAATTTATTGTTTGTGTCTATTCAGGTTTTGAAGTTGTCAGATTTTGGTGTACAAGGTGCTGATTCCAAGAATATCTTTTACTTGAGAGAAATCGATGATGCTGATCAACTTGTGGAAGCATTAAAAGCTAAGAAAAATGGTAAAGCTGTTGTTGTTGGGGGAGGGTACATCGGTCTCGAGCTTAGTGCTGTACTGAGACTGAACAACATTGAAGTCAATATGGTTTACCCAGAACCATGGTGCAGTAAGTAAATTGCGTTTAGTTTGCACACTGCATGCATAACATGAAATGTTACACTGTTTCATGGTAGTCTGTTATGGAGAATATATTGTCCTGCTTAATTGTATTGTTATCTTACTGTAATCCTTATGATTTTCCAGTGCCTCGGCTTTTCACAGAGGGCATAGCTGCGTTCTATGAAGGTTATTATAAAAACAAGGGAGTCAATATTATCAAGGGTACAGTGGCTGTTGGGTTTGATACCCATCCAAATGGAGAGGTTTTTCTCTAGACTCTACCATTTTGAGAAATCTGGTTGAGCTTTAGAGCATTACCTCACAGCATTCTTGTTTTGAATTTGCAGGTGAAGGAAGTCAAACTCAAAGATGGCAGAGTTTTGGAAGCTGACATAGTAGTCGTAGGAGTCGGAGCAAGACCACTCACAACTCTAT</genome_strand>
        <mrna_strand>CCGGTAGTTAAGCCTGGGGAACTGGCTATTATTTCCAAAGAGGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTCCTTATGAACGTCCTGCACTTAGCAAGGCATACCTTTTTCCTGAAG............................................................................................................................................................................................................................................................................................................................................................................GAGCTGCTAGACTCCCAGGATTTCATGTGTGTGTTGGAAGTGGAGGAGAGAGACAGCTTCCTGAGTGGTATGCAGAGAAAG..................................................................................................................................GCATTTCGTTGATCCTGAGTACTGAAATAGTGAAAGCAGATCTTGCTTCAAAGACTCTTGTTAGTGCAGCTGGGGAATCTTTTAAATATCAAACACTTGTTATTGCAACAGGATCCACC......................................................................................GTTTTGAAGTTGTCAGATTTTGGTGTACAAGGTGCTGATTCCAAGAATATCTTTTACTTGAGAGAAATCGATGATGCTGATCAACTTGTGGAAGCATTAAAAGCTAAGAAAAATGGTAAAGCTGTTGTTGTTGGGGGAGGGTACATCGGTCTCGAGCTTAGTGCTGTACTGAGACTGAACAACATTGAAGTCAATATGGTTTACCCAGAACCATGGTGCA.........................................................................................................................................TGCCTCGGCTTTTCACAGAGGGCATAGCTGCGTTCTATGAAGGTTATTATAAAAACAAGGGAGTCAATATTATCAAGGGTACAGTGGCTGTTGGGTTTGATACCCATCCAAATGGAGAG....................................................................................GTGAAGGAAGTCAAACTCAAAGATGGCAGAGTTTTGGAAGCTGACATAGTAGTCGTAAGAGTCGGAGCAAGACCACTCACAACTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301613" ref_strand="+" ref_description="SGN-E301613 [cLEW-23-C7]">
      <seq>acagcttcctgagtggtatgcagagaaaggcatttcgttgatcctgagtactgaaatagtgaaagcagatcttgcttcaaagactcttgttagtgcagctggggaatcttttaaatatcaaacacttgttattgcaacaggatccaccgttttgaagttgtcagattttggtgtacaaggtgctgattccaagaatatcttttacttgagagaaatcgatgatgctgatcaacttgtggaagcattaaaagctaagaaaaatggtaaagctgttgttgttgggggagggtacatcggtctcgagcttagtgctgtactgagactgaacaacattgaagtcaatatggtttacccagaaccatggtgcatgcctcggcttttcacagaaggcatagctgcgttctatgaaagttattataaaaacaagggagtcaatattatcaaaggtacagtggctgttgggtttgatacccatccaaatggagaggtgaaggaagtcaaactcaaagatggcaaagttttggaagctgacatagtagtcgtaggagtcggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="-" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="80872" stop="79282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80572" g_stop="80544" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80543" i_stop="80414" i_length="130">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80413" g_stop="80295" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="148" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80294" i_stop="80209" i_length="86">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80208" g_stop="79989" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="368" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79988" i_stop="79852" i_length="137">
            <donor d_prob="0.689" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79851" g_stop="79733" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="487" r_length="119" r_score="0.975"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79732" i_stop="79649" i_length="84">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79648" g_stop="79582" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="554" r_length="67" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="-" ref_id="SGN-E301613" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80572" e_stop="80544"/>
          <exon e_start="80413" e_stop="80295"/>
          <exon e_start="80208" e_stop="79989"/>
          <exon e_start="79851" e_stop="79733"/>
          <exon e_start="79648" e_stop="79582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGCTTCCTGAGTGGTATGCAGAGAAAGGTAAATAGTCTCTGTGTTTAAGCAATTATTTGCAGACATATGGCCATGCATGACTTCTGTTAACTTTACATATGGTGGTATATCTGGTTGAAGACACATCTCTTATGAATCATCTGGTCTCATCTTGTAGGCATTTCGTTGATCCTGAGTACTGAAATAGTGAAAGCAGATCTTGCTTCAAAGACTCTTGTTAGTGCAGCTGGGGAATCTTTTAAATATCAAACACTTGTTATTGCAACAGGATCCACCGTGAGTCTCTTGGAAACGTGGTTGTGTTGTTTAATTTAAAAATTTTCTTTGGTCATTAGATTAATTTATTGTTTGTGTCTATTCAGGTTTTGAAGTTGTCAGATTTTGGTGTACAAGGTGCTGATTCCAAGAATATCTTTTACTTGAGAGAAATCGATGATGCTGATCAACTTGTGGAAGCATTAAAAGCTAAGAAAAATGGTAAAGCTGTTGTTGTTGGGGGAGGGTACATCGGTCTCGAGCTTAGTGCTGTACTGAGACTGAACAACATTGAAGTCAATATGGTTTACCCAGAACCATGGTGCAGTAAGTAAATTGCGTTTAGTTTGCACACTGCATGCATAACATGAAATGTTACACTGTTTCATGGTAGTCTGTTATGGAGAATATATTGTCCTGCTTAATTGTATTGTTATCTTACTGTAATCCTTATGATTTTCCAGTGCCTCGGCTTTTCACAGAGGGCATAGCTGCGTTCTATGAAGGTTATTATAAAAACAAGGGAGTCAATATTATCAAGGGTACAGTGGCTGTTGGGTTTGATACCCATCCAAATGGAGAGGTTTTTCTCTAGACTCTACCATTTTGAGAAATCTGGTTGAGCTTTAGAGCATTACCTCACAGCATTCTTGTTTTGAATTTGCAGGTGAAGGAAGTCAAACTCAAAGATGGCAGAGTTTTGGAAGCTGACATAGTAGTCGTAGGAGTCGGAG</genome_strand>
        <mrna_strand>ACAGCTTCCTGAGTGGTATGCAGAGAAAG..................................................................................................................................GCATTTCGTTGATCCTGAGTACTGAAATAGTGAAAGCAGATCTTGCTTCAAAGACTCTTGTTAGTGCAGCTGGGGAATCTTTTAAATATCAAACACTTGTTATTGCAACAGGATCCACC......................................................................................GTTTTGAAGTTGTCAGATTTTGGTGTACAAGGTGCTGATTCCAAGAATATCTTTTACTTGAGAGAAATCGATGATGCTGATCAACTTGTGGAAGCATTAAAAGCTAAGAAAAATGGTAAAGCTGTTGTTGTTGGGGGAGGGTACATCGGTCTCGAGCTTAGTGCTGTACTGAGACTGAACAACATTGAAGTCAATATGGTTTACCCAGAACCATGGTGCA.........................................................................................................................................TGCCTCGGCTTTTCACAGAAGGCATAGCTGCGTTCTATGAAAGTTATTATAAAAACAAGGGAGTCAATATTATCAAAGGTACAGTGGCTGTTGGGTTTGATACCCATCCAAATGGAGAG....................................................................................GTGAAGGAAGTCAAACTCAAAGATGGCAAAGTTTTGGAAGCTGACATAGTAGTCGTAGGAGTCGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697250" ref_strand="+" ref_description="SGN-E697250 [FA02AA06]">
      <seq>cgctaaaagctctaactattttcactgtgaaagttcatcaatggcggagaaatcattcaagtatgtgatcggtggcggtgtttctgctgggtatgctgctagagaatttgccaaacagggagttaagcctggggaactggctattatttccaaagaggcagtggctccttatgaacgtcctgcacttagcaaggcatacctttttcctgaaggagctgctagactcccaggatttcatgtgtgtgttggaagtggaggagagagacagcttcctgagtggtatgcagagaaaggcatttcgttgatcctgagtactgaaatagtgaaagcagatcttgcttcaaagactcttgttagtgcagctggggaatcttttaaatatcaaacacttgttattgcaacaggatccaccgttttgaagttgtcagattttggtgtacaaggtgctgattccaagaatatcttttacttgagagaaatcgatgatgctgatcaacttgtggaagcattaaaagctaagaaaaatggtaaagctgttgttgttgggggagggtacatcggtctcgagcttagtgctgtactgagactgaacaacattgaagtcaatatggtttacccagaaccatggtgcatgcctcggcttttcacagagggcatagctgcgttctatgaaggttattataaaaacaagggagtcaatattatcaagggtacagtggctgttgggtttgatacccatccaaatggagaggtgaaggaagtcaaactcaaagatggcagagttttggaagctgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="-" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="83309" stop="79302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83013" g_stop="82923" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82922" i_stop="81651" i_length="1272">
            <donor d_prob="0.978" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81650" g_stop="81579" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="160" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81578" i_stop="81041" i_length="538">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81040" g_stop="80989" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="212" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80988" i_stop="80625" i_length="364">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.698" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80624" g_stop="80544" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="293" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80543" i_stop="80414" i_length="130">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80413" g_stop="80295" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="412" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80294" i_stop="80209" i_length="86">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80208" g_stop="79989" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="632" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="79988" i_stop="79852" i_length="137">
            <donor d_prob="0.689" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="79851" g_stop="79733" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="751" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="79732" i_stop="79649" i_length="84">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="79648" g_stop="79602" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="752" r_stop="798" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="-" ref_id="SGN-E697250" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83013" e_stop="82923"/>
          <exon e_start="81650" e_stop="81579"/>
          <exon e_start="81040" e_stop="80989"/>
          <exon e_start="80624" e_stop="80544"/>
          <exon e_start="80413" e_stop="80295"/>
          <exon e_start="80208" e_stop="79989"/>
          <exon e_start="79851" e_stop="79733"/>
          <exon e_start="79648" e_stop="79602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAAAAGCTCTAACTATTTTCACTGTGAAAGTTCATCAATGGCGGAGAAATCATTCAAGTATGTGATCGTCGGTGGCGGTGTTTCTGCTGTGAGTATTTACCGATCGTCAAATTTAGCTTTATTTATGATTTTTTTGTTCAATAGACTTTAGTTTCTTAGCTTACATGTTTGATTTGAGTTCGGAATTGCGGAATTCGTGTTCTAGTTTTTTTTTTTTTTTGATGATTTTCCGGTGAGAATTATTCGATGTGATGTATAGTTTACAATAGATCTGAAAGTTAGCATAGTGAAATGGCGTTTCGGTTCCTGCATCTGTACATATACACACTGATAAATATTAAGATATAGAAGTTATTTTTTTAAGGATAACTGAGAGAGACAGTGTGGTGCACGGTTCTGTACAAACGTAAATTCATGTATTTTTAGTTTTACTTAATATTTTGATAGTCAACTGTTAGATTATGGAGTTTGAAAGCGAGAATTATTTCCATTTAGTGTTTCAATCTGCTGTGGAATGGTTGATTTGCTTAGGAATGGAGTTAGATCAGAGATGCTTTCAATACGAAGTGATATATTGAGACGGATACACGTGCTCGTATACATCCTTGTGTGTGTGTGTGTTTGTGTTACTTTATTCTTCATTTCAGTTGTTAGATTTTGGAGAGTGATAGCTAGAGTATTGTTGTAGGTAAGCTTATATCCCTTCATTGTTTTGGCTTAATTGTTGAAATGAGTCATTTAGAAATGGAGTTTGGAGGGTTTGAGTACGAAGTGATTTGAAAATGTAGAACCTACTAGTTGTCTAGTTGAGATATTGGGAGGAAGAGATCATGGCATACTTATTGCTATTTACTTTGGATGGTTATAACCAGTTGACACAAAATTTAATGTGATTTGATGAGTTAAAGTATCCCAGTCTCCTCTATTTTGTCCTTTGGCTTAGAAATTGTAGATATCTTCGAATGGTTGGGTAATGAACTCTAAATCTTTCATTAGAATATTGTAACTGGCATATAAGTTCCCTAATTTGTCATTCCTCTTATTTGGGATAACTAATGATTAGGATTCTAGTAGAGATATGTATTGCTACTTCTGCCCACGAATTATTTCTTTGTTTGTATAGAAGATTCCTTTTTGTATTTACTGTAACTGTACGTTTCGTTTTTCCGTGGTATTGACAAAGAGGCTACGTTTACCTCTTTCCCTAGGATGTGGAAAAAGATTTATTAGGAACTAGCTGAAATAAAGGATTATAGTTTTGTTTCTGAAATCTTGTAGGAACAAATCTTCTTGTTTATGCATTCAACTTTTTTGAATTCGTGTTCGTAAATGAATTTAACAAGTTTGGTTGCATTTGCAGGGGTATGCTGCTAGAGAATTTGCCAAACAGGGAGTTAAGCCTGGGGAACTGGCTATTATTTCCAAAGAGGCAGTAAGTATTTTGTACTGCTTTCTTGCCTTCACTAATTTAATATTAGATACTAGTTGCATTTCTGCTTGTGTGGACTTCATTTTGGAAAAGGGATCATTTGTTTTGTTTTCTGTAAATATTGTATCATTGGTCTCTAGAGTTATATAAGAATCTCTAAGTTCTGTGGTTGATGTTATAAGCTAATTTTTCATCAGCTAATACTTGTAAATTTCCTGAAAGTACATTCATGATTCCTTAGCTAATATTGTTAAATTCCCTTTGATATATTCTTGTCTATTTGGATAGGAAAAGTGTCTTGGTACTCTACGATTTGCTTGTAAATTTGTACTAATCTTCCCAAAACGAGTTCTGATCACACCTCTGTTGTCCCTAGTGTGTTAGGCTATGCCTATCTTTCTCTCTCTTTGGTTGATTTTTTTTTGCAACTTATCTACTCTTATGTCCATTCTTTCCTGTTTTACATCTAACAATCTTTCCTTCTTTCAGGAAAATAATGTTAGATTTGATCTGATTGCTAAAAAGTTTTTTTCTACCTCAGGTGGCTCCTTATGAACGTCCTGCACTTAGCAAGGCATACCTTTTTCCTGAAGGCAAGTCTTCTTTTTTCCTTGGATAGTTAATTTTGACTTCCGTAAGTGGTAATGTGGATGTGGACTTGAATAAAAGTCTTATTATGGAAAATGCATATCATCTTTATTTGTAGTTAAAGTCCTTGCAGACACATTTGAAAATATATCTCAACTTTTCTTGTAGAAAGATCATTGCTTGTCCTACTAGCAAAGAAAAAAAATGAAAAAAGAAAAACAATTTGAGCATGATTTATTTTACAGAATGTCATCTCATGTAGTTTTGTCACAAATTGCCAAGTCAAAAAGCTGCTGTACTTTTTAAACATTTGAAATTGACCTGGTATCATAAAATCTTTTCCCTAACACATATCCGTTGATCTACCAGGAGCTGCTAGACTCCCAGGATTTCATGTGTGTGTTGGAAGTGGAGGAGAGAGACAGCTTCCTGAGTGGTATGCAGAGAAAGGTAAATAGTCTCTGTGTTTAAGCAATTATTTGCAGACATATGGCCATGCATGACTTCTGTTAACTTTACATATGGTGGTATATCTGGTTGAAGACACATCTCTTATGAATCATCTGGTCTCATCTTGTAGGCATTTCGTTGATCCTGAGTACTGAAATAGTGAAAGCAGATCTTGCTTCAAAGACTCTTGTTAGTGCAGCTGGGGAATCTTTTAAATATCAAACACTTGTTATTGCAACAGGATCCACCGTGAGTCTCTTGGAAACGTGGTTGTGTTGTTTAATTTAAAAATTTTCTTTGGTCATTAGATTAATTTATTGTTTGTGTCTATTCAGGTTTTGAAGTTGTCAGATTTTGGTGTACAAGGTGCTGATTCCAAGAATATCTTTTACTTGAGAGAAATCGATGATGCTGATCAACTTGTGGAAGCATTAAAAGCTAAGAAAAATGGTAAAGCTGTTGTTGTTGGGGGAGGGTACATCGGTCTCGAGCTTAGTGCTGTACTGAGACTGAACAACATTGAAGTCAATATGGTTTACCCAGAACCATGGTGCAGTAAGTAAATTGCGTTTAGTTTGCACACTGCATGCATAACATGAAATGTTACACTGTTTCATGGTAGTCTGTTATGGAGAATATATTGTCCTGCTTAATTGTATTGTTATCTTACTGTAATCCTTATGATTTTCCAGTGCCTCGGCTTTTCACAGAGGGCATAGCTGCGTTCTATGAAGGTTATTATAAAAACAAGGGAGTCAATATTATCAAGGGTACAGTGGCTGTTGGGTTTGATACCCATCCAAATGGAGAGGTTTTTCTCTAGACTCTACCATTTTGAGAAATCTGGTTGAGCTTTAGAGCATTACCTCACAGCATTCTTGTTTTGAATTTGCAGGTGAAGGAAGTCAAACTCAAAGATGGCAGAGTTTTGGAAGCTGACAT</genome_strand>
        <mrna_strand>CGCTAAAAGCTCTAACTATTTTCACTGTGAAAGTTCATCAATGGCGGAGAAATCATTCAAGTATGTGA---TCGGTGGCGGTGTTTCTGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTATGCTGCTAGAGAATTTGCCAAACAGGGAGTTAAGCCTGGGGAACTGGCTATTATTTCCAAAGAGGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTCCTTATGAACGTCCTGCACTTAGCAAGGCATACCTTTTTCCTGAAG............................................................................................................................................................................................................................................................................................................................................................................GAGCTGCTAGACTCCCAGGATTTCATGTGTGTGTTGGAAGTGGAGGAGAGAGACAGCTTCCTGAGTGGTATGCAGAGAAAG..................................................................................................................................GCATTTCGTTGATCCTGAGTACTGAAATAGTGAAAGCAGATCTTGCTTCAAAGACTCTTGTTAGTGCAGCTGGGGAATCTTTTAAATATCAAACACTTGTTATTGCAACAGGATCCACC......................................................................................GTTTTGAAGTTGTCAGATTTTGGTGTACAAGGTGCTGATTCCAAGAATATCTTTTACTTGAGAGAAATCGATGATGCTGATCAACTTGTGGAAGCATTAAAAGCTAAGAAAAATGGTAAAGCTGTTGTTGTTGGGGGAGGGTACATCGGTCTCGAGCTTAGTGCTGTACTGAGACTGAACAACATTGAAGTCAATATGGTTTACCCAGAACCATGGTGCA.........................................................................................................................................TGCCTCGGCTTTTCACAGAGGGCATAGCTGCGTTCTATGAAGGTTATTATAAAAACAAGGGAGTCAATATTATCAAGGGTACAGTGGCTGTTGGGTTTGATACCCATCCAAATGGAGAG....................................................................................GTGAAGGAAGTCAAACTCAAAGATGGCAGAGTTTTGGAAGCTGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205914" ref_strand="+" ref_description="SGN-E205914 [cLEC-20-L24]">
      <seq>cgttttgaagttgtcagattttggtgtacaaggtgctgaggccaagaatatcttttacttgagagaaatcgatgatgctgatcaacttgtggaagcattaaaagctaagaaaaatggtaaagctgttgatgttgggggagggtacatcatgtctcgagcttagtgctgtactgagactgtacaacattgaagtcaatatggattacccagaaccatggtgcatgcctcggcttttcacagagggcttaactgtgttctatgaaggttattatcaaaacaatggagtcaatattatcaagggtacagtggctgttgggtttgatacccatccaaatggagaggtgaatgaagtcaaactcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="-" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="80508" stop="79431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80295" g_stop="80295" g_length="1"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1" r_length="1" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80294" i_stop="80209" i_length="86">
            <donor d_prob="0.864" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80208" g_stop="79989" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="222" r_length="221" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79988" i_stop="79852" i_length="137">
            <donor d_prob="0.689" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79851" g_stop="79733" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="341" r_length="119" r_score="0.958"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79732" i_stop="79649" i_length="84">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79648" g_stop="79629" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="361" r_length="20" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="-" ref_id="SGN-E205914" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80295" e_stop="80295"/>
          <exon e_start="80208" e_stop="79989"/>
          <exon e_start="79851" e_stop="79733"/>
          <exon e_start="79648" e_stop="79629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGAGTCTCTTGGAAACGTGGTTGTGTTGTTTAATTTAAAAATTTTCTTTGGTCATTAGATTAATTTATTGTTTGTGTCTATTCAGGTTTTGAAGTTGTCAGATTTTGGTGTACAAGGTGCTGATTCCAAGAATATCTTTTACTTGAGAGAAATCGATGATGCTGATCAACTTGTGGAAGCATTAAAAGCTAAGAAAAATGGTAAAGCTGTTGTTGTTGGGGGAGGGTACATC-GGTCTCGAGCTTAGTGCTGTACTGAGACTGAACAACATTGAAGTCAATATGGTTTACCCAGAACCATGGTGCAGTAAGTAAATTGCGTTTAGTTTGCACACTGCATGCATAACATGAAATGTTACACTGTTTCATGGTAGTCTGTTATGGAGAATATATTGTCCTGCTTAATTGTATTGTTATCTTACTGTAATCCTTATGATTTTCCAGTGCCTCGGCTTTTCACAGAGGGCATAGCTGCGTTCTATGAAGGTTATTATAAAAACAAGGGAGTCAATATTATCAAGGGTACAGTGGCTGTTGGGTTTGATACCCATCCAAATGGAGAGGTTTTTCTCTAGACTCTACCATTTTGAGAAATCTGGTTGAGCTTTAGAGCATTACCTCACAGCATTCTTGTTTTGAATTTGCAGGTGAAGGAAGTCAAACTCAA</genome_strand>
        <mrna_strand>C......................................................................................GTTTTGAAGTTGTCAGATTTTGGTGTACAAGGTGCTGAGGCCAAGAATATCTTTTACTTGAGAGAAATCGATGATGCTGATCAACTTGTGGAAGCATTAAAAGCTAAGAAAAATGGTAAAGCTGTTGATGTTGGGGGAGGGTACATCATGTCTCGAGCTTAGTGCTGTACTGAGACTGTACAACATTGAAGTCAATATGGATTACCCAGAACCATGGTGCA.........................................................................................................................................TGCCTCGGCTTTTCACAGAGGGCTTAACTGTGTTCTATGAAGGTTATTATCAAAACAATGGAGTCAATATTATCAAGGGTACAGTGGCTGTTGGGTTTGATACCCATCCAAATGGAGAG....................................................................................GTGAATGAAGTCAAACTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334239" ref_strand="+" ref_description="SGN-E334239 [cTOD-21-L24]">
      <seq>caccaaaaaagctctaactattttcactgtgaaagttcatcaatggcggagaaatcattcaagtatgtgatcgtcggtggcggtgtttctgctgggtatgctgctagagaatttgccaaacagggagttaagcctggggaactggctattatttccaaagaggcagtggctccttatgaacgtcctgcacttagcaaggcatacctttttcctgaaggagctgctagactcccaggatttcatgtgtgtgttggaagtggaggagagagacagcttcctgagtggtatgcagagaaaggcatttcgttgatcctgagtactgaaatagtgaaagcagatcttgcttcaaagactcttgttagtgcagctggggaatcttttaaatatcaaacacttgttattgcaacaggatccaccgttttgaagttgtcagattttggtgtacaaggtgctgattccaagaatatcttttacttgagagaaatcgatgatgctgatcaacttgtggaagcattaaaagctaagaaaaatggtaaagctgttgttgttgggggagggtacatcggtctcgagcttagtgctgtactgagactgaacaacattgaagtcaatatggtttacccagaaccatggtgcatgcctcggcttttcacagagggcatagctgcgttctatgaaggttattataaaaacaagggagtcatattatcaagggtacagtggctgntgggtttgatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="-" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="83315" stop="79448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83015" g_stop="82923" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82922" i_stop="81651" i_length="1272">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81650" g_stop="81579" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="165" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81578" i_stop="81041" i_length="538">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81040" g_stop="80989" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="217" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80988" i_stop="80625" i_length="364">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.698" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80624" g_stop="80544" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="298" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80543" i_stop="80414" i_length="130">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80413" g_stop="80295" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="417" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80294" i_stop="80209" i_length="86">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80208" g_stop="79989" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="637" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="79988" i_stop="79852" i_length="137">
            <donor d_prob="0.689" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="79851" g_stop="79748" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="740" r_length="103" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="-" ref_id="SGN-E334239" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83015" e_stop="82923"/>
          <exon e_start="81650" e_stop="81579"/>
          <exon e_start="81040" e_stop="80989"/>
          <exon e_start="80624" e_stop="80544"/>
          <exon e_start="80413" e_stop="80295"/>
          <exon e_start="80208" e_stop="79989"/>
          <exon e_start="79851" e_stop="79748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAAAAAAGCTCTAACTATTTTCACTGTGAAAGTTCATCAATGGCGGAGAAATCATTCAAGTATGTGATCGTCGGTGGCGGTGTTTCTGCTGTGAGTATTTACCGATCGTCAAATTTAGCTTTATTTATGATTTTTTTGTTCAATAGACTTTAGTTTCTTAGCTTACATGTTTGATTTGAGTTCGGAATTGCGGAATTCGTGTTCTAGTTTTTTTTTTTTTTTGATGATTTTCCGGTGAGAATTATTCGATGTGATGTATAGTTTACAATAGATCTGAAAGTTAGCATAGTGAAATGGCGTTTCGGTTCCTGCATCTGTACATATACACACTGATAAATATTAAGATATAGAAGTTATTTTTTTAAGGATAACTGAGAGAGACAGTGTGGTGCACGGTTCTGTACAAACGTAAATTCATGTATTTTTAGTTTTACTTAATATTTTGATAGTCAACTGTTAGATTATGGAGTTTGAAAGCGAGAATTATTTCCATTTAGTGTTTCAATCTGCTGTGGAATGGTTGATTTGCTTAGGAATGGAGTTAGATCAGAGATGCTTTCAATACGAAGTGATATATTGAGACGGATACACGTGCTCGTATACATCCTTGTGTGTGTGTGTGTTTGTGTTACTTTATTCTTCATTTCAGTTGTTAGATTTTGGAGAGTGATAGCTAGAGTATTGTTGTAGGTAAGCTTATATCCCTTCATTGTTTTGGCTTAATTGTTGAAATGAGTCATTTAGAAATGGAGTTTGGAGGGTTTGAGTACGAAGTGATTTGAAAATGTAGAACCTACTAGTTGTCTAGTTGAGATATTGGGAGGAAGAGATCATGGCATACTTATTGCTATTTACTTTGGATGGTTATAACCAGTTGACACAAAATTTAATGTGATTTGATGAGTTAAAGTATCCCAGTCTCCTCTATTTTGTCCTTTGGCTTAGAAATTGTAGATATCTTCGAATGGTTGGGTAATGAACTCTAAATCTTTCATTAGAATATTGTAACTGGCATATAAGTTCCCTAATTTGTCATTCCTCTTATTTGGGATAACTAATGATTAGGATTCTAGTAGAGATATGTATTGCTACTTCTGCCCACGAATTATTTCTTTGTTTGTATAGAAGATTCCTTTTTGTATTTACTGTAACTGTACGTTTCGTTTTTCCGTGGTATTGACAAAGAGGCTACGTTTACCTCTTTCCCTAGGATGTGGAAAAAGATTTATTAGGAACTAGCTGAAATAAAGGATTATAGTTTTGTTTCTGAAATCTTGTAGGAACAAATCTTCTTGTTTATGCATTCAACTTTTTTGAATTCGTGTTCGTAAATGAATTTAACAAGTTTGGTTGCATTTGCAGGGGTATGCTGCTAGAGAATTTGCCAAACAGGGAGTTAAGCCTGGGGAACTGGCTATTATTTCCAAAGAGGCAGTAAGTATTTTGTACTGCTTTCTTGCCTTCACTAATTTAATATTAGATACTAGTTGCATTTCTGCTTGTGTGGACTTCATTTTGGAAAAGGGATCATTTGTTTTGTTTTCTGTAAATATTGTATCATTGGTCTCTAGAGTTATATAAGAATCTCTAAGTTCTGTGGTTGATGTTATAAGCTAATTTTTCATCAGCTAATACTTGTAAATTTCCTGAAAGTACATTCATGATTCCTTAGCTAATATTGTTAAATTCCCTTTGATATATTCTTGTCTATTTGGATAGGAAAAGTGTCTTGGTACTCTACGATTTGCTTGTAAATTTGTACTAATCTTCCCAAAACGAGTTCTGATCACACCTCTGTTGTCCCTAGTGTGTTAGGCTATGCCTATCTTTCTCTCTCTTTGGTTGATTTTTTTTTGCAACTTATCTACTCTTATGTCCATTCTTTCCTGTTTTACATCTAACAATCTTTCCTTCTTTCAGGAAAATAATGTTAGATTTGATCTGATTGCTAAAAAGTTTTTTTCTACCTCAGGTGGCTCCTTATGAACGTCCTGCACTTAGCAAGGCATACCTTTTTCCTGAAGGCAAGTCTTCTTTTTTCCTTGGATAGTTAATTTTGACTTCCGTAAGTGGTAATGTGGATGTGGACTTGAATAAAAGTCTTATTATGGAAAATGCATATCATCTTTATTTGTAGTTAAAGTCCTTGCAGACACATTTGAAAATATATCTCAACTTTTCTTGTAGAAAGATCATTGCTTGTCCTACTAGCAAAGAAAAAAAATGAAAAAAGAAAAACAATTTGAGCATGATTTATTTTACAGAATGTCATCTCATGTAGTTTTGTCACAAATTGCCAAGTCAAAAAGCTGCTGTACTTTTTAAACATTTGAAATTGACCTGGTATCATAAAATCTTTTCCCTAACACATATCCGTTGATCTACCAGGAGCTGCTAGACTCCCAGGATTTCATGTGTGTGTTGGAAGTGGAGGAGAGAGACAGCTTCCTGAGTGGTATGCAGAGAAAGGTAAATAGTCTCTGTGTTTAAGCAATTATTTGCAGACATATGGCCATGCATGACTTCTGTTAACTTTACATATGGTGGTATATCTGGTTGAAGACACATCTCTTATGAATCATCTGGTCTCATCTTGTAGGCATTTCGTTGATCCTGAGTACTGAAATAGTGAAAGCAGATCTTGCTTCAAAGACTCTTGTTAGTGCAGCTGGGGAATCTTTTAAATATCAAACACTTGTTATTGCAACAGGATCCACCGTGAGTCTCTTGGAAACGTGGTTGTGTTGTTTAATTTAAAAATTTTCTTTGGTCATTAGATTAATTTATTGTTTGTGTCTATTCAGGTTTTGAAGTTGTCAGATTTTGGTGTACAAGGTGCTGATTCCAAGAATATCTTTTACTTGAGAGAAATCGATGATGCTGATCAACTTGTGGAAGCATTAAAAGCTAAGAAAAATGGTAAAGCTGTTGTTGTTGGGGGAGGGTACATCGGTCTCGAGCTTAGTGCTGTACTGAGACTGAACAACATTGAAGTCAATATGGTTTACCCAGAACCATGGTGCAGTAAGTAAATTGCGTTTAGTTTGCACACTGCATGCATAACATGAAATGTTACACTGTTTCATGGTAGTCTGTTATGGAGAATATATTGTCCTGCTTAATTGTATTGTTATCTTACTGTAATCCTTATGATTTTCCAGTGCCTCGGCTTTTCACAGAGGGCATAGCTGCGTTCTATGAAGGTTATTATAAAAACAAGGGAGTCAATATTATCAAGGGTACAGTGGCTGTTGGGTTTGATACC</genome_strand>
        <mrna_strand>CACCAAAAAAGCTCTAACTATTTTCACTGTGAAAGTTCATCAATGGCGGAGAAATCATTCAAGTATGTGATCGTCGGTGGCGGTGTTTCTGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTATGCTGCTAGAGAATTTGCCAAACAGGGAGTTAAGCCTGGGGAACTGGCTATTATTTCCAAAGAGGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTCCTTATGAACGTCCTGCACTTAGCAAGGCATACCTTTTTCCTGAAG............................................................................................................................................................................................................................................................................................................................................................................GAGCTGCTAGACTCCCAGGATTTCATGTGTGTGTTGGAAGTGGAGGAGAGAGACAGCTTCCTGAGTGGTATGCAGAGAAAG..................................................................................................................................GCATTTCGTTGATCCTGAGTACTGAAATAGTGAAAGCAGATCTTGCTTCAAAGACTCTTGTTAGTGCAGCTGGGGAATCTTTTAAATATCAAACACTTGTTATTGCAACAGGATCCACC......................................................................................GTTTTGAAGTTGTCAGATTTTGGTGTACAAGGTGCTGATTCCAAGAATATCTTTTACTTGAGAGAAATCGATGATGCTGATCAACTTGTGGAAGCATTAAAAGCTAAGAAAAATGGTAAAGCTGTTGTTGTTGGGGGAGGGTACATCGGTCTCGAGCTTAGTGCTGTACTGAGACTGAACAACATTGAAGTCAATATGGTTTACCCAGAACCATGGTGCA.........................................................................................................................................TGCCTCGGCTTTTCACAGAGGGCATAGCTGCGTTCTATGAAGGTTATTATAAAAACAAGGGAGTC-ATATTATCAAGGGTACAGTGGCTGNTGGGTTTGATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E333468" ref_strand="+" ref_description="SGN-E333468 [cTOD-20-E18]">
      <seq>caccaaaaaagctctaactattttcactgtgaaagttcatcaatggcggagaaatcattcaagtatgtgatcgtcggtggcggtgtttctgctgggtatgctgctagagaatttgccaaacagggagttaagcctggggaactggctattatttccaaagaggcagtggctccttatgaacgtcctgcacttagcaaggcatacctttttcctgaaggagctgctagactcccaggatttcatgtgtgtgttggaagtggaggagagagacagcttcctgagtggtatgcagagaaaggcatttcgttgatcctgagtactgaaatagtgaaagcagatcttgcttcaaagactcttgttagtgcagctggggaatcttttaaatatcaaacacttgttattgcaacaggatccaccgttttgaagttgtcagattttggtgtacaaggtgctgattccaagaatatcttttacttgagagaaatcgatgatgctgatcaacttgtggaagcattaaaagctaagaaaaatggtaaagctgttgttgntgggggagggtacatcggtctcgagcttagtgctgtactgagactgaacacatttgagtcaatatggtttacccagaaccatggtgcatgcctcggcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="-" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="83315" stop="79689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83015" g_stop="82923" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82922" i_stop="81651" i_length="1272">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81650" g_stop="81579" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="165" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81578" i_stop="81041" i_length="538">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81040" g_stop="80989" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="217" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80988" i_stop="80625" i_length="364">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.698" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80624" g_stop="80544" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="298" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80543" i_stop="80414" i_length="130">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80413" g_stop="80295" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="417" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80294" i_stop="80209" i_length="86">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80208" g_stop="79989" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="636" r_length="219" r_score="0.982"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="79988" i_stop="79852" i_length="137">
            <donor d_prob="0.689" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="79851" g_stop="79840" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="648" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="-" ref_id="SGN-E333468" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83015" e_stop="82923"/>
          <exon e_start="81650" e_stop="81579"/>
          <exon e_start="81040" e_stop="80989"/>
          <exon e_start="80624" e_stop="80544"/>
          <exon e_start="80413" e_stop="80295"/>
          <exon e_start="80208" e_stop="79989"/>
          <exon e_start="79851" e_stop="79840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAAAAAAGCTCTAACTATTTTCACTGTGAAAGTTCATCAATGGCGGAGAAATCATTCAAGTATGTGATCGTCGGTGGCGGTGTTTCTGCTGTGAGTATTTACCGATCGTCAAATTTAGCTTTATTTATGATTTTTTTGTTCAATAGACTTTAGTTTCTTAGCTTACATGTTTGATTTGAGTTCGGAATTGCGGAATTCGTGTTCTAGTTTTTTTTTTTTTTTGATGATTTTCCGGTGAGAATTATTCGATGTGATGTATAGTTTACAATAGATCTGAAAGTTAGCATAGTGAAATGGCGTTTCGGTTCCTGCATCTGTACATATACACACTGATAAATATTAAGATATAGAAGTTATTTTTTTAAGGATAACTGAGAGAGACAGTGTGGTGCACGGTTCTGTACAAACGTAAATTCATGTATTTTTAGTTTTACTTAATATTTTGATAGTCAACTGTTAGATTATGGAGTTTGAAAGCGAGAATTATTTCCATTTAGTGTTTCAATCTGCTGTGGAATGGTTGATTTGCTTAGGAATGGAGTTAGATCAGAGATGCTTTCAATACGAAGTGATATATTGAGACGGATACACGTGCTCGTATACATCCTTGTGTGTGTGTGTGTTTGTGTTACTTTATTCTTCATTTCAGTTGTTAGATTTTGGAGAGTGATAGCTAGAGTATTGTTGTAGGTAAGCTTATATCCCTTCATTGTTTTGGCTTAATTGTTGAAATGAGTCATTTAGAAATGGAGTTTGGAGGGTTTGAGTACGAAGTGATTTGAAAATGTAGAACCTACTAGTTGTCTAGTTGAGATATTGGGAGGAAGAGATCATGGCATACTTATTGCTATTTACTTTGGATGGTTATAACCAGTTGACACAAAATTTAATGTGATTTGATGAGTTAAAGTATCCCAGTCTCCTCTATTTTGTCCTTTGGCTTAGAAATTGTAGATATCTTCGAATGGTTGGGTAATGAACTCTAAATCTTTCATTAGAATATTGTAACTGGCATATAAGTTCCCTAATTTGTCATTCCTCTTATTTGGGATAACTAATGATTAGGATTCTAGTAGAGATATGTATTGCTACTTCTGCCCACGAATTATTTCTTTGTTTGTATAGAAGATTCCTTTTTGTATTTACTGTAACTGTACGTTTCGTTTTTCCGTGGTATTGACAAAGAGGCTACGTTTACCTCTTTCCCTAGGATGTGGAAAAAGATTTATTAGGAACTAGCTGAAATAAAGGATTATAGTTTTGTTTCTGAAATCTTGTAGGAACAAATCTTCTTGTTTATGCATTCAACTTTTTTGAATTCGTGTTCGTAAATGAATTTAACAAGTTTGGTTGCATTTGCAGGGGTATGCTGCTAGAGAATTTGCCAAACAGGGAGTTAAGCCTGGGGAACTGGCTATTATTTCCAAAGAGGCAGTAAGTATTTTGTACTGCTTTCTTGCCTTCACTAATTTAATATTAGATACTAGTTGCATTTCTGCTTGTGTGGACTTCATTTTGGAAAAGGGATCATTTGTTTTGTTTTCTGTAAATATTGTATCATTGGTCTCTAGAGTTATATAAGAATCTCTAAGTTCTGTGGTTGATGTTATAAGCTAATTTTTCATCAGCTAATACTTGTAAATTTCCTGAAAGTACATTCATGATTCCTTAGCTAATATTGTTAAATTCCCTTTGATATATTCTTGTCTATTTGGATAGGAAAAGTGTCTTGGTACTCTACGATTTGCTTGTAAATTTGTACTAATCTTCCCAAAACGAGTTCTGATCACACCTCTGTTGTCCCTAGTGTGTTAGGCTATGCCTATCTTTCTCTCTCTTTGGTTGATTTTTTTTTGCAACTTATCTACTCTTATGTCCATTCTTTCCTGTTTTACATCTAACAATCTTTCCTTCTTTCAGGAAAATAATGTTAGATTTGATCTGATTGCTAAAAAGTTTTTTTCTACCTCAGGTGGCTCCTTATGAACGTCCTGCACTTAGCAAGGCATACCTTTTTCCTGAAGGCAAGTCTTCTTTTTTCCTTGGATAGTTAATTTTGACTTCCGTAAGTGGTAATGTGGATGTGGACTTGAATAAAAGTCTTATTATGGAAAATGCATATCATCTTTATTTGTAGTTAAAGTCCTTGCAGACACATTTGAAAATATATCTCAACTTTTCTTGTAGAAAGATCATTGCTTGTCCTACTAGCAAAGAAAAAAAATGAAAAAAGAAAAACAATTTGAGCATGATTTATTTTACAGAATGTCATCTCATGTAGTTTTGTCACAAATTGCCAAGTCAAAAAGCTGCTGTACTTTTTAAACATTTGAAATTGACCTGGTATCATAAAATCTTTTCCCTAACACATATCCGTTGATCTACCAGGAGCTGCTAGACTCCCAGGATTTCATGTGTGTGTTGGAAGTGGAGGAGAGAGACAGCTTCCTGAGTGGTATGCAGAGAAAGGTAAATAGTCTCTGTGTTTAAGCAATTATTTGCAGACATATGGCCATGCATGACTTCTGTTAACTTTACATATGGTGGTATATCTGGTTGAAGACACATCTCTTATGAATCATCTGGTCTCATCTTGTAGGCATTTCGTTGATCCTGAGTACTGAAATAGTGAAAGCAGATCTTGCTTCAAAGACTCTTGTTAGTGCAGCTGGGGAATCTTTTAAATATCAAACACTTGTTATTGCAACAGGATCCACCGTGAGTCTCTTGGAAACGTGGTTGTGTTGTTTAATTTAAAAATTTTCTTTGGTCATTAGATTAATTTATTGTTTGTGTCTATTCAGGTTTTGAAGTTGTCAGATTTTGGTGTACAAGGTGCTGATTCCAAGAATATCTTTTACTTGAGAGAAATCGATGATGCTGATCAACTTGTGGAAGCATTAAAAGCTAAGAAAAATGGTAAAGCTGTTGTTGTTGGGGGAGGGTACATCGGTCTCGAGCTTAGTGCTGTACTGAGACTGAACAACATTGAAGTCAATATGGTTTACCCAGAACCATGGTGCAGTAAGTAAATTGCGTTTAGTTTGCACACTGCATGCATAACATGAAATGTTACACTGTTTCATGGTAGTCTGTTATGGAGAATATATTGTCCTGCTTAATTGTATTGTTATCTTACTGTAATCCTTATGATTTTCCAGTGCCTCGGCTTT</genome_strand>
        <mrna_strand>CACCAAAAAAGCTCTAACTATTTTCACTGTGAAAGTTCATCAATGGCGGAGAAATCATTCAAGTATGTGATCGTCGGTGGCGGTGTTTCTGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTATGCTGCTAGAGAATTTGCCAAACAGGGAGTTAAGCCTGGGGAACTGGCTATTATTTCCAAAGAGGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTCCTTATGAACGTCCTGCACTTAGCAAGGCATACCTTTTTCCTGAAG............................................................................................................................................................................................................................................................................................................................................................................GAGCTGCTAGACTCCCAGGATTTCATGTGTGTGTTGGAAGTGGAGGAGAGAGACAGCTTCCTGAGTGGTATGCAGAGAAAG..................................................................................................................................GCATTTCGTTGATCCTGAGTACTGAAATAGTGAAAGCAGATCTTGCTTCAAAGACTCTTGTTAGTGCAGCTGGGGAATCTTTTAAATATCAAACACTTGTTATTGCAACAGGATCCACC......................................................................................GTTTTGAAGTTGTCAGATTTTGGTGTACAAGGTGCTGATTCCAAGAATATCTTTTACTTGAGAGAAATCGATGATGCTGATCAACTTGTGGAAGCATTAAAAGCTAAGAAAAATGGTAAAGCTGTTGTTGNTGGGGGAGGGTACATCGGTCTCGAGCTTAGTGCTGTACTGAGACTGAAC-ACATTTGAGTCAATATGGTTTACCCAGAACCATGGTGCA.........................................................................................................................................TGCCTCGGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707038" ref_strand="+" ref_description="SGN-E707038 [FA31DE10]">
      <seq>aaaaaagctctaactatttacactgagaaagttcatccattggcggagaaatcattctagtatgtgatcgtcggtggcggagtttctgctgggcatgctgctagagaatttgccaaacagggagttaagcctggggaactggctattatttccacagaggcagtggctccttatgaacgtcctgcacttagcaaggtatacctttttcctgaaggagctgctagactcccaggatttcatgtgtgtgttggaagtggaggagagagatagcttcctgagtggtatgcagagaaaggcatttcgttgatcctgagtactgaaatagtgaaagcagatcttgcttcaaagactcttgttagtgcagctggggaatcttttacatatcaacacacttgttattgcaacaggatccaccgttttgaagtcgtcacattttggtgcacaaagtgctgattccaacaatatcttttacttgaacaaaaatcgatgatgctgatccacttgtggaacaattaaaagctcagaaaaatggtacagctgctgttgttggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="-" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="83311" stop="79772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83011" g_stop="82923" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82922" i_stop="81651" i_length="1272">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81650" g_stop="81579" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="162" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81578" i_stop="81041" i_length="538">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81040" g_stop="80989" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="214" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80988" i_stop="80625" i_length="364">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.698" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80624" g_stop="80544" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="295" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80543" i_stop="80414" i_length="130">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80413" g_stop="80295" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="415" r_length="120" r_score="0.975"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80294" i_stop="80209" i_length="86">
            <donor d_prob="0.864" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80208" g_stop="80072" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="553" r_length="138" r_score="0.891"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="-" ref_id="SGN-E707038" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83011" e_stop="82923"/>
          <exon e_start="81650" e_stop="81579"/>
          <exon e_start="81040" e_stop="80989"/>
          <exon e_start="80624" e_stop="80544"/>
          <exon e_start="80413" e_stop="80295"/>
          <exon e_start="80208" e_stop="80072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGCTCTAACTATTTTCACTGTGAAAGTTCAT-CAATGGCGGAGAAATCATTCAAGTATGTGATCGTCGGTGGCGGTGTTTCTGCTGTGAGTATTTACCGATCGTCAAATTTAGCTTTATTTATGATTTTTTTGTTCAATAGACTTTAGTTTCTTAGCTTACATGTTTGATTTGAGTTCGGAATTGCGGAATTCGTGTTCTAGTTTTTTTTTTTTTTTGATGATTTTCCGGTGAGAATTATTCGATGTGATGTATAGTTTACAATAGATCTGAAAGTTAGCATAGTGAAATGGCGTTTCGGTTCCTGCATCTGTACATATACACACTGATAAATATTAAGATATAGAAGTTATTTTTTTAAGGATAACTGAGAGAGACAGTGTGGTGCACGGTTCTGTACAAACGTAAATTCATGTATTTTTAGTTTTACTTAATATTTTGATAGTCAACTGTTAGATTATGGAGTTTGAAAGCGAGAATTATTTCCATTTAGTGTTTCAATCTGCTGTGGAATGGTTGATTTGCTTAGGAATGGAGTTAGATCAGAGATGCTTTCAATACGAAGTGATATATTGAGACGGATACACGTGCTCGTATACATCCTTGTGTGTGTGTGTGTTTGTGTTACTTTATTCTTCATTTCAGTTGTTAGATTTTGGAGAGTGATAGCTAGAGTATTGTTGTAGGTAAGCTTATATCCCTTCATTGTTTTGGCTTAATTGTTGAAATGAGTCATTTAGAAATGGAGTTTGGAGGGTTTGAGTACGAAGTGATTTGAAAATGTAGAACCTACTAGTTGTCTAGTTGAGATATTGGGAGGAAGAGATCATGGCATACTTATTGCTATTTACTTTGGATGGTTATAACCAGTTGACACAAAATTTAATGTGATTTGATGAGTTAAAGTATCCCAGTCTCCTCTATTTTGTCCTTTGGCTTAGAAATTGTAGATATCTTCGAATGGTTGGGTAATGAACTCTAAATCTTTCATTAGAATATTGTAACTGGCATATAAGTTCCCTAATTTGTCATTCCTCTTATTTGGGATAACTAATGATTAGGATTCTAGTAGAGATATGTATTGCTACTTCTGCCCACGAATTATTTCTTTGTTTGTATAGAAGATTCCTTTTTGTATTTACTGTAACTGTACGTTTCGTTTTTCCGTGGTATTGACAAAGAGGCTACGTTTACCTCTTTCCCTAGGATGTGGAAAAAGATTTATTAGGAACTAGCTGAAATAAAGGATTATAGTTTTGTTTCTGAAATCTTGTAGGAACAAATCTTCTTGTTTATGCATTCAACTTTTTTGAATTCGTGTTCGTAAATGAATTTAACAAGTTTGGTTGCATTTGCAGGGGTATGCTGCTAGAGAATTTGCCAAACAGGGAGTTAAGCCTGGGGAACTGGCTATTATTTCCAAAGAGGCAGTAAGTATTTTGTACTGCTTTCTTGCCTTCACTAATTTAATATTAGATACTAGTTGCATTTCTGCTTGTGTGGACTTCATTTTGGAAAAGGGATCATTTGTTTTGTTTTCTGTAAATATTGTATCATTGGTCTCTAGAGTTATATAAGAATCTCTAAGTTCTGTGGTTGATGTTATAAGCTAATTTTTCATCAGCTAATACTTGTAAATTTCCTGAAAGTACATTCATGATTCCTTAGCTAATATTGTTAAATTCCCTTTGATATATTCTTGTCTATTTGGATAGGAAAAGTGTCTTGGTACTCTACGATTTGCTTGTAAATTTGTACTAATCTTCCCAAAACGAGTTCTGATCACACCTCTGTTGTCCCTAGTGTGTTAGGCTATGCCTATCTTTCTCTCTCTTTGGTTGATTTTTTTTTGCAACTTATCTACTCTTATGTCCATTCTTTCCTGTTTTACATCTAACAATCTTTCCTTCTTTCAGGAAAATAATGTTAGATTTGATCTGATTGCTAAAAAGTTTTTTTCTACCTCAGGTGGCTCCTTATGAACGTCCTGCACTTAGCAAGGCATACCTTTTTCCTGAAGGCAAGTCTTCTTTTTTCCTTGGATAGTTAATTTTGACTTCCGTAAGTGGTAATGTGGATGTGGACTTGAATAAAAGTCTTATTATGGAAAATGCATATCATCTTTATTTGTAGTTAAAGTCCTTGCAGACACATTTGAAAATATATCTCAACTTTTCTTGTAGAAAGATCATTGCTTGTCCTACTAGCAAAGAAAAAAAATGAAAAAAGAAAAACAATTTGAGCATGATTTATTTTACAGAATGTCATCTCATGTAGTTTTGTCACAAATTGCCAAGTCAAAAAGCTGCTGTACTTTTTAAACATTTGAAATTGACCTGGTATCATAAAATCTTTTCCCTAACACATATCCGTTGATCTACCAGGAGCTGCTAGACTCCCAGGATTTCATGTGTGTGTTGGAAGTGGAGGAGAGAGACAGCTTCCTGAGTGGTATGCAGAGAAAGGTAAATAGTCTCTGTGTTTAAGCAATTATTTGCAGACATATGGCCATGCATGACTTCTGTTAACTTTACATATGGTGGTATATCTGGTTGAAGACACATCTCTTATGAATCATCTGGTCTCATCTTGTAGGCATTTCGTTGATCCTGAGTACTGAAATAGTGAAAGCAGATCTTGCTTCAAAGACTCTTGTTAGTGCAGCTGGGGAATCTTTTAAATATCAA-ACACTTGTTATTGCAACAGGATCCACCGTGAGTCTCTTGGAAACGTGGTTGTGTTGTTTAATTTAAAAATTTTCTTTGGTCATTAGATTAATTTATTGTTTGTGTCTATTCAGGTTTTGAAGTTGTCAGATTTTGGTGTACAAGGTGCTGATTCCAAGAATATCTTTTACTTG-AGAGAAATCGATGATGCTGATCAACTTGTGGAAGCATTAAAAGCTAAGAAAAATGGTAAAGCTGTTGTTGTTGGGGG</genome_strand>
        <mrna_strand>AAAAAAGCTCTAACTATTTACACTGAGAAAGTTCATCCATTGGCGGAGAAATCATTCTAGTATGTGATCGTCGGTGGCGGAGTTTCTGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCATGCTGCTAGAGAATTTGCCAAACAGGGAGTTAAGCCTGGGGAACTGGCTATTATTTCCACAGAGGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTCCTTATGAACGTCCTGCACTTAGCAAGGTATACCTTTTTCCTGAAG............................................................................................................................................................................................................................................................................................................................................................................GAGCTGCTAGACTCCCAGGATTTCATGTGTGTGTTGGAAGTGGAGGAGAGAGATAGCTTCCTGAGTGGTATGCAGAGAAAG..................................................................................................................................GCATTTCGTTGATCCTGAGTACTGAAATAGTGAAAGCAGATCTTGCTTCAAAGACTCTTGTTAGTGCAGCTGGGGAATCTTTTACATATCAACACACTTGTTATTGCAACAGGATCCACC......................................................................................GTTTTGAAGTCGTCACATTTTGGTGCACAAAGTGCTGATTCCAACAATATCTTTTACTTGAACAAAAATCGATGATGCTGATCCACTTGTGGAACAATTAAAAGCTCAGAAAAATGGTACAGCTGCTGTTGTTGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E293723" ref_strand="+" ref_description="SGN-E293723 [cLET-21-L22]">
      <seq>aaaaaagctctaactattttcactgtgaaagttcatcaatggcggagaaatcattcaagtatgtgatcgtcggtggcggtgtttctgctgggtatgctgctagagaatttgccaaacagggagttaagcctggggaactggctattatttccaaagaggcagtggctccttatgaacgtcctgcacttagcaaggcatacctttttcctgaaggagctgctagactcccaggatttcatgtgtgtgttggaagtggaggagagagacagcttcctgagtggtatgcagagaaaggcatttcgttgatcctgagtactgaaatagtgaaagcagatcttgcttcaaagactcttgttagtgcagctggggaatcttttaaatatcaaacacttgttattgcaacaggatccaccgttttgaagttgtcagattttggtgtacaaggtgctgattccaagaatatcttttacttgagagaaatcgatgatgctgatcaacttgtggaagcattaaaagctaagaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="-" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="83311" stop="79795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83011" g_stop="82923" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82922" i_stop="81651" i_length="1272">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81650" g_stop="81579" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="161" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81578" i_stop="81041" i_length="538">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81040" g_stop="80989" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="213" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80988" i_stop="80625" i_length="364">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.698" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80624" g_stop="80544" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="294" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80543" i_stop="80414" i_length="130">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80413" g_stop="80295" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="413" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80294" i_stop="80209" i_length="86">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80208" g_stop="80095" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="527" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="-" ref_id="SGN-E293723" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83011" e_stop="82923"/>
          <exon e_start="81650" e_stop="81579"/>
          <exon e_start="81040" e_stop="80989"/>
          <exon e_start="80624" e_stop="80544"/>
          <exon e_start="80413" e_stop="80295"/>
          <exon e_start="80208" e_stop="80095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGCTCTAACTATTTTCACTGTGAAAGTTCATCAATGGCGGAGAAATCATTCAAGTATGTGATCGTCGGTGGCGGTGTTTCTGCTGTGAGTATTTACCGATCGTCAAATTTAGCTTTATTTATGATTTTTTTGTTCAATAGACTTTAGTTTCTTAGCTTACATGTTTGATTTGAGTTCGGAATTGCGGAATTCGTGTTCTAGTTTTTTTTTTTTTTTGATGATTTTCCGGTGAGAATTATTCGATGTGATGTATAGTTTACAATAGATCTGAAAGTTAGCATAGTGAAATGGCGTTTCGGTTCCTGCATCTGTACATATACACACTGATAAATATTAAGATATAGAAGTTATTTTTTTAAGGATAACTGAGAGAGACAGTGTGGTGCACGGTTCTGTACAAACGTAAATTCATGTATTTTTAGTTTTACTTAATATTTTGATAGTCAACTGTTAGATTATGGAGTTTGAAAGCGAGAATTATTTCCATTTAGTGTTTCAATCTGCTGTGGAATGGTTGATTTGCTTAGGAATGGAGTTAGATCAGAGATGCTTTCAATACGAAGTGATATATTGAGACGGATACACGTGCTCGTATACATCCTTGTGTGTGTGTGTGTTTGTGTTACTTTATTCTTCATTTCAGTTGTTAGATTTTGGAGAGTGATAGCTAGAGTATTGTTGTAGGTAAGCTTATATCCCTTCATTGTTTTGGCTTAATTGTTGAAATGAGTCATTTAGAAATGGAGTTTGGAGGGTTTGAGTACGAAGTGATTTGAAAATGTAGAACCTACTAGTTGTCTAGTTGAGATATTGGGAGGAAGAGATCATGGCATACTTATTGCTATTTACTTTGGATGGTTATAACCAGTTGACACAAAATTTAATGTGATTTGATGAGTTAAAGTATCCCAGTCTCCTCTATTTTGTCCTTTGGCTTAGAAATTGTAGATATCTTCGAATGGTTGGGTAATGAACTCTAAATCTTTCATTAGAATATTGTAACTGGCATATAAGTTCCCTAATTTGTCATTCCTCTTATTTGGGATAACTAATGATTAGGATTCTAGTAGAGATATGTATTGCTACTTCTGCCCACGAATTATTTCTTTGTTTGTATAGAAGATTCCTTTTTGTATTTACTGTAACTGTACGTTTCGTTTTTCCGTGGTATTGACAAAGAGGCTACGTTTACCTCTTTCCCTAGGATGTGGAAAAAGATTTATTAGGAACTAGCTGAAATAAAGGATTATAGTTTTGTTTCTGAAATCTTGTAGGAACAAATCTTCTTGTTTATGCATTCAACTTTTTTGAATTCGTGTTCGTAAATGAATTTAACAAGTTTGGTTGCATTTGCAGGGGTATGCTGCTAGAGAATTTGCCAAACAGGGAGTTAAGCCTGGGGAACTGGCTATTATTTCCAAAGAGGCAGTAAGTATTTTGTACTGCTTTCTTGCCTTCACTAATTTAATATTAGATACTAGTTGCATTTCTGCTTGTGTGGACTTCATTTTGGAAAAGGGATCATTTGTTTTGTTTTCTGTAAATATTGTATCATTGGTCTCTAGAGTTATATAAGAATCTCTAAGTTCTGTGGTTGATGTTATAAGCTAATTTTTCATCAGCTAATACTTGTAAATTTCCTGAAAGTACATTCATGATTCCTTAGCTAATATTGTTAAATTCCCTTTGATATATTCTTGTCTATTTGGATAGGAAAAGTGTCTTGGTACTCTACGATTTGCTTGTAAATTTGTACTAATCTTCCCAAAACGAGTTCTGATCACACCTCTGTTGTCCCTAGTGTGTTAGGCTATGCCTATCTTTCTCTCTCTTTGGTTGATTTTTTTTTGCAACTTATCTACTCTTATGTCCATTCTTTCCTGTTTTACATCTAACAATCTTTCCTTCTTTCAGGAAAATAATGTTAGATTTGATCTGATTGCTAAAAAGTTTTTTTCTACCTCAGGTGGCTCCTTATGAACGTCCTGCACTTAGCAAGGCATACCTTTTTCCTGAAGGCAAGTCTTCTTTTTTCCTTGGATAGTTAATTTTGACTTCCGTAAGTGGTAATGTGGATGTGGACTTGAATAAAAGTCTTATTATGGAAAATGCATATCATCTTTATTTGTAGTTAAAGTCCTTGCAGACACATTTGAAAATATATCTCAACTTTTCTTGTAGAAAGATCATTGCTTGTCCTACTAGCAAAGAAAAAAAATGAAAAAAGAAAAACAATTTGAGCATGATTTATTTTACAGAATGTCATCTCATGTAGTTTTGTCACAAATTGCCAAGTCAAAAAGCTGCTGTACTTTTTAAACATTTGAAATTGACCTGGTATCATAAAATCTTTTCCCTAACACATATCCGTTGATCTACCAGGAGCTGCTAGACTCCCAGGATTTCATGTGTGTGTTGGAAGTGGAGGAGAGAGACAGCTTCCTGAGTGGTATGCAGAGAAAGGTAAATAGTCTCTGTGTTTAAGCAATTATTTGCAGACATATGGCCATGCATGACTTCTGTTAACTTTACATATGGTGGTATATCTGGTTGAAGACACATCTCTTATGAATCATCTGGTCTCATCTTGTAGGCATTTCGTTGATCCTGAGTACTGAAATAGTGAAAGCAGATCTTGCTTCAAAGACTCTTGTTAGTGCAGCTGGGGAATCTTTTAAATATCAAACACTTGTTATTGCAACAGGATCCACCGTGAGTCTCTTGGAAACGTGGTTGTGTTGTTTAATTTAAAAATTTTCTTTGGTCATTAGATTAATTTATTGTTTGTGTCTATTCAGGTTTTGAAGTTGTCAGATTTTGGTGTACAAGGTGCTGATTCCAAGAATATCTTTTACTTGAGAGAAATCGATGATGCTGATCAACTTGTGGAAGCATTAAAAGCTAAGAAAAAT</genome_strand>
        <mrna_strand>AAAAAAGCTCTAACTATTTTCACTGTGAAAGTTCATCAATGGCGGAGAAATCATTCAAGTATGTGATCGTCGGTGGCGGTGTTTCTGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTATGCTGCTAGAGAATTTGCCAAACAGGGAGTTAAGCCTGGGGAACTGGCTATTATTTCCAAAGAGGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTCCTTATGAACGTCCTGCACTTAGCAAGGCATACCTTTTTCCTGAAG............................................................................................................................................................................................................................................................................................................................................................................GAGCTGCTAGACTCCCAGGATTTCATGTGTGTGTTGGAAGTGGAGGAGAGAGACAGCTTCCTGAGTGGTATGCAGAGAAAG..................................................................................................................................GCATTTCGTTGATCCTGAGTACTGAAATAGTGAAAGCAGATCTTGCTTCAAAGACTCTTGTTAGTGCAGCTGGGGAATCTTTTAAATATCAAACACTTGTTATTGCAACAGGATCCACC......................................................................................GTTTTGAAGTTGTCAGATTTTGGTGTACAAGGTGCTGATTCCAAGAATATCTTTTACTTGAGAGAAATCGATGATGCTGATCAACTTGTGGAAGCATTAAAAGCTAAGAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287848" ref_strand="+" ref_description="SGN-E287848 [cLES-19-E15]">
      <seq>ttcaccaaaaaagctctaactattttcactgtgaaagttcatcaatggcggagaaatcattcaagtatgtgatcgtcggtggcggtgtttctgctgggtatgctgctagagaatttgccaaacagggagttaagcctggggaactggctattatttccaaagaggcagtggctccttatgaacgtcctgcacttagcaaggcatacctttttcctgaaggagctgctagactcccaggatttcatgtgtgtgttggaagtggaggagagagacagcttcctgagtggtatgcagagaaaggcatttcgttgatcctgagtactgaaatagtgaaagcagatcttgcttcaaagactcttgttagtgcagctggggaatcttttaaatatcaaacacttgttattgcaacaggatccaccgttttgaagttgtcagattttggtgtacaaggtgctgattccaagaatatcttttacttgagagaaatcgatgatgctgatcaacttgtggaagcattaaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="-" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="83317" stop="79805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83017" g_stop="82923" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82922" i_stop="81651" i_length="1272">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81650" g_stop="81579" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="167" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81578" i_stop="81041" i_length="538">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81040" g_stop="80989" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="219" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80988" i_stop="80625" i_length="364">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.698" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80624" g_stop="80544" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="300" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80543" i_stop="80414" i_length="130">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80413" g_stop="80295" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="419" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80294" i_stop="80209" i_length="86">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80208" g_stop="80105" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="523" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="-" ref_id="SGN-E287848" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83017" e_stop="82923"/>
          <exon e_start="81650" e_stop="81579"/>
          <exon e_start="81040" e_stop="80989"/>
          <exon e_start="80624" e_stop="80544"/>
          <exon e_start="80413" e_stop="80295"/>
          <exon e_start="80208" e_stop="80105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACCAAAAAAGCTCTAACTATTTTCACTGTGAAAGTTCATCAATGGCGGAGAAATCATTCAAGTATGTGATCGTCGGTGGCGGTGTTTCTGCTGTGAGTATTTACCGATCGTCAAATTTAGCTTTATTTATGATTTTTTTGTTCAATAGACTTTAGTTTCTTAGCTTACATGTTTGATTTGAGTTCGGAATTGCGGAATTCGTGTTCTAGTTTTTTTTTTTTTTTGATGATTTTCCGGTGAGAATTATTCGATGTGATGTATAGTTTACAATAGATCTGAAAGTTAGCATAGTGAAATGGCGTTTCGGTTCCTGCATCTGTACATATACACACTGATAAATATTAAGATATAGAAGTTATTTTTTTAAGGATAACTGAGAGAGACAGTGTGGTGCACGGTTCTGTACAAACGTAAATTCATGTATTTTTAGTTTTACTTAATATTTTGATAGTCAACTGTTAGATTATGGAGTTTGAAAGCGAGAATTATTTCCATTTAGTGTTTCAATCTGCTGTGGAATGGTTGATTTGCTTAGGAATGGAGTTAGATCAGAGATGCTTTCAATACGAAGTGATATATTGAGACGGATACACGTGCTCGTATACATCCTTGTGTGTGTGTGTGTTTGTGTTACTTTATTCTTCATTTCAGTTGTTAGATTTTGGAGAGTGATAGCTAGAGTATTGTTGTAGGTAAGCTTATATCCCTTCATTGTTTTGGCTTAATTGTTGAAATGAGTCATTTAGAAATGGAGTTTGGAGGGTTTGAGTACGAAGTGATTTGAAAATGTAGAACCTACTAGTTGTCTAGTTGAGATATTGGGAGGAAGAGATCATGGCATACTTATTGCTATTTACTTTGGATGGTTATAACCAGTTGACACAAAATTTAATGTGATTTGATGAGTTAAAGTATCCCAGTCTCCTCTATTTTGTCCTTTGGCTTAGAAATTGTAGATATCTTCGAATGGTTGGGTAATGAACTCTAAATCTTTCATTAGAATATTGTAACTGGCATATAAGTTCCCTAATTTGTCATTCCTCTTATTTGGGATAACTAATGATTAGGATTCTAGTAGAGATATGTATTGCTACTTCTGCCCACGAATTATTTCTTTGTTTGTATAGAAGATTCCTTTTTGTATTTACTGTAACTGTACGTTTCGTTTTTCCGTGGTATTGACAAAGAGGCTACGTTTACCTCTTTCCCTAGGATGTGGAAAAAGATTTATTAGGAACTAGCTGAAATAAAGGATTATAGTTTTGTTTCTGAAATCTTGTAGGAACAAATCTTCTTGTTTATGCATTCAACTTTTTTGAATTCGTGTTCGTAAATGAATTTAACAAGTTTGGTTGCATTTGCAGGGGTATGCTGCTAGAGAATTTGCCAAACAGGGAGTTAAGCCTGGGGAACTGGCTATTATTTCCAAAGAGGCAGTAAGTATTTTGTACTGCTTTCTTGCCTTCACTAATTTAATATTAGATACTAGTTGCATTTCTGCTTGTGTGGACTTCATTTTGGAAAAGGGATCATTTGTTTTGTTTTCTGTAAATATTGTATCATTGGTCTCTAGAGTTATATAAGAATCTCTAAGTTCTGTGGTTGATGTTATAAGCTAATTTTTCATCAGCTAATACTTGTAAATTTCCTGAAAGTACATTCATGATTCCTTAGCTAATATTGTTAAATTCCCTTTGATATATTCTTGTCTATTTGGATAGGAAAAGTGTCTTGGTACTCTACGATTTGCTTGTAAATTTGTACTAATCTTCCCAAAACGAGTTCTGATCACACCTCTGTTGTCCCTAGTGTGTTAGGCTATGCCTATCTTTCTCTCTCTTTGGTTGATTTTTTTTTGCAACTTATCTACTCTTATGTCCATTCTTTCCTGTTTTACATCTAACAATCTTTCCTTCTTTCAGGAAAATAATGTTAGATTTGATCTGATTGCTAAAAAGTTTTTTTCTACCTCAGGTGGCTCCTTATGAACGTCCTGCACTTAGCAAGGCATACCTTTTTCCTGAAGGCAAGTCTTCTTTTTTCCTTGGATAGTTAATTTTGACTTCCGTAAGTGGTAATGTGGATGTGGACTTGAATAAAAGTCTTATTATGGAAAATGCATATCATCTTTATTTGTAGTTAAAGTCCTTGCAGACACATTTGAAAATATATCTCAACTTTTCTTGTAGAAAGATCATTGCTTGTCCTACTAGCAAAGAAAAAAAATGAAAAAAGAAAAACAATTTGAGCATGATTTATTTTACAGAATGTCATCTCATGTAGTTTTGTCACAAATTGCCAAGTCAAAAAGCTGCTGTACTTTTTAAACATTTGAAATTGACCTGGTATCATAAAATCTTTTCCCTAACACATATCCGTTGATCTACCAGGAGCTGCTAGACTCCCAGGATTTCATGTGTGTGTTGGAAGTGGAGGAGAGAGACAGCTTCCTGAGTGGTATGCAGAGAAAGGTAAATAGTCTCTGTGTTTAAGCAATTATTTGCAGACATATGGCCATGCATGACTTCTGTTAACTTTACATATGGTGGTATATCTGGTTGAAGACACATCTCTTATGAATCATCTGGTCTCATCTTGTAGGCATTTCGTTGATCCTGAGTACTGAAATAGTGAAAGCAGATCTTGCTTCAAAGACTCTTGTTAGTGCAGCTGGGGAATCTTTTAAATATCAAACACTTGTTATTGCAACAGGATCCACCGTGAGTCTCTTGGAAACGTGGTTGTGTTGTTTAATTTAAAAATTTTCTTTGGTCATTAGATTAATTTATTGTTTGTGTCTATTCAGGTTTTGAAGTTGTCAGATTTTGGTGTACAAGGTGCTGATTCCAAGAATATCTTTTACTTGAGAGAAATCGATGATGCTGATCAACTTGTGGAAGCATTAAAAGC</genome_strand>
        <mrna_strand>TTCACCAAAAAAGCTCTAACTATTTTCACTGTGAAAGTTCATCAATGGCGGAGAAATCATTCAAGTATGTGATCGTCGGTGGCGGTGTTTCTGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTATGCTGCTAGAGAATTTGCCAAACAGGGAGTTAAGCCTGGGGAACTGGCTATTATTTCCAAAGAGGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTCCTTATGAACGTCCTGCACTTAGCAAGGCATACCTTTTTCCTGAAG............................................................................................................................................................................................................................................................................................................................................................................GAGCTGCTAGACTCCCAGGATTTCATGTGTGTGTTGGAAGTGGAGGAGAGAGACAGCTTCCTGAGTGGTATGCAGAGAAAG..................................................................................................................................GCATTTCGTTGATCCTGAGTACTGAAATAGTGAAAGCAGATCTTGCTTCAAAGACTCTTGTTAGTGCAGCTGGGGAATCTTTTAAATATCAAACACTTGTTATTGCAACAGGATCCACC......................................................................................GTTTTGAAGTTGTCAGATTTTGGTGTACAAGGTGCTGATTCCAAGAATATCTTTTACTTGAGAGAAATCGATGATGCTGATCAACTTGTGGAAGCATTAAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303289" ref_strand="+" ref_description="SGN-E303289 [cLEX-5-N16]">
      <seq>accaaaaaagctctaactattttcactgtgaaagttcatcaatggcggagaaatcattcaagtatgtgatcgtcggtggcggtgtttctgctgggtatgctgctagagaatttgccaaacagggagttaagcctggggaactggctattatttccaaagaggcagtggctccttatgaacgtcctgcacttagcaaggcatacctttttcctgaaggagctgctagactcccaggatttcatgtgtgtgttggaagtggaggagagagacagcttcctgagtggtatgcagagaaaggcatttcgttgatcctgagtactgaaatagtgaaagcagatcttgcttcaaagactcttgttagtgcagctggggaatcttttaaatatcaaacacttgttattgcaacaggatccaccgttttgaagttgtcagattttggtgtacaaggtgctgattccaagaatatcttttacttgagagaaatcgatgatgctgatcaacttgtggaagcattaaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="-" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="83314" stop="79805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83014" g_stop="82923" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82922" i_stop="81651" i_length="1272">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81650" g_stop="81579" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="164" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81578" i_stop="81041" i_length="538">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81040" g_stop="80989" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="216" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80988" i_stop="80625" i_length="364">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.698" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80624" g_stop="80544" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="297" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80543" i_stop="80414" i_length="130">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80413" g_stop="80295" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="416" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80294" i_stop="80209" i_length="86">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80208" g_stop="80105" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="520" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="-" ref_id="SGN-E303289" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83014" e_stop="82923"/>
          <exon e_start="81650" e_stop="81579"/>
          <exon e_start="81040" e_stop="80989"/>
          <exon e_start="80624" e_stop="80544"/>
          <exon e_start="80413" e_stop="80295"/>
          <exon e_start="80208" e_stop="80105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAAAAAGCTCTAACTATTTTCACTGTGAAAGTTCATCAATGGCGGAGAAATCATTCAAGTATGTGATCGTCGGTGGCGGTGTTTCTGCTGTGAGTATTTACCGATCGTCAAATTTAGCTTTATTTATGATTTTTTTGTTCAATAGACTTTAGTTTCTTAGCTTACATGTTTGATTTGAGTTCGGAATTGCGGAATTCGTGTTCTAGTTTTTTTTTTTTTTTGATGATTTTCCGGTGAGAATTATTCGATGTGATGTATAGTTTACAATAGATCTGAAAGTTAGCATAGTGAAATGGCGTTTCGGTTCCTGCATCTGTACATATACACACTGATAAATATTAAGATATAGAAGTTATTTTTTTAAGGATAACTGAGAGAGACAGTGTGGTGCACGGTTCTGTACAAACGTAAATTCATGTATTTTTAGTTTTACTTAATATTTTGATAGTCAACTGTTAGATTATGGAGTTTGAAAGCGAGAATTATTTCCATTTAGTGTTTCAATCTGCTGTGGAATGGTTGATTTGCTTAGGAATGGAGTTAGATCAGAGATGCTTTCAATACGAAGTGATATATTGAGACGGATACACGTGCTCGTATACATCCTTGTGTGTGTGTGTGTTTGTGTTACTTTATTCTTCATTTCAGTTGTTAGATTTTGGAGAGTGATAGCTAGAGTATTGTTGTAGGTAAGCTTATATCCCTTCATTGTTTTGGCTTAATTGTTGAAATGAGTCATTTAGAAATGGAGTTTGGAGGGTTTGAGTACGAAGTGATTTGAAAATGTAGAACCTACTAGTTGTCTAGTTGAGATATTGGGAGGAAGAGATCATGGCATACTTATTGCTATTTACTTTGGATGGTTATAACCAGTTGACACAAAATTTAATGTGATTTGATGAGTTAAAGTATCCCAGTCTCCTCTATTTTGTCCTTTGGCTTAGAAATTGTAGATATCTTCGAATGGTTGGGTAATGAACTCTAAATCTTTCATTAGAATATTGTAACTGGCATATAAGTTCCCTAATTTGTCATTCCTCTTATTTGGGATAACTAATGATTAGGATTCTAGTAGAGATATGTATTGCTACTTCTGCCCACGAATTATTTCTTTGTTTGTATAGAAGATTCCTTTTTGTATTTACTGTAACTGTACGTTTCGTTTTTCCGTGGTATTGACAAAGAGGCTACGTTTACCTCTTTCCCTAGGATGTGGAAAAAGATTTATTAGGAACTAGCTGAAATAAAGGATTATAGTTTTGTTTCTGAAATCTTGTAGGAACAAATCTTCTTGTTTATGCATTCAACTTTTTTGAATTCGTGTTCGTAAATGAATTTAACAAGTTTGGTTGCATTTGCAGGGGTATGCTGCTAGAGAATTTGCCAAACAGGGAGTTAAGCCTGGGGAACTGGCTATTATTTCCAAAGAGGCAGTAAGTATTTTGTACTGCTTTCTTGCCTTCACTAATTTAATATTAGATACTAGTTGCATTTCTGCTTGTGTGGACTTCATTTTGGAAAAGGGATCATTTGTTTTGTTTTCTGTAAATATTGTATCATTGGTCTCTAGAGTTATATAAGAATCTCTAAGTTCTGTGGTTGATGTTATAAGCTAATTTTTCATCAGCTAATACTTGTAAATTTCCTGAAAGTACATTCATGATTCCTTAGCTAATATTGTTAAATTCCCTTTGATATATTCTTGTCTATTTGGATAGGAAAAGTGTCTTGGTACTCTACGATTTGCTTGTAAATTTGTACTAATCTTCCCAAAACGAGTTCTGATCACACCTCTGTTGTCCCTAGTGTGTTAGGCTATGCCTATCTTTCTCTCTCTTTGGTTGATTTTTTTTTGCAACTTATCTACTCTTATGTCCATTCTTTCCTGTTTTACATCTAACAATCTTTCCTTCTTTCAGGAAAATAATGTTAGATTTGATCTGATTGCTAAAAAGTTTTTTTCTACCTCAGGTGGCTCCTTATGAACGTCCTGCACTTAGCAAGGCATACCTTTTTCCTGAAGGCAAGTCTTCTTTTTTCCTTGGATAGTTAATTTTGACTTCCGTAAGTGGTAATGTGGATGTGGACTTGAATAAAAGTCTTATTATGGAAAATGCATATCATCTTTATTTGTAGTTAAAGTCCTTGCAGACACATTTGAAAATATATCTCAACTTTTCTTGTAGAAAGATCATTGCTTGTCCTACTAGCAAAGAAAAAAAATGAAAAAAGAAAAACAATTTGAGCATGATTTATTTTACAGAATGTCATCTCATGTAGTTTTGTCACAAATTGCCAAGTCAAAAAGCTGCTGTACTTTTTAAACATTTGAAATTGACCTGGTATCATAAAATCTTTTCCCTAACACATATCCGTTGATCTACCAGGAGCTGCTAGACTCCCAGGATTTCATGTGTGTGTTGGAAGTGGAGGAGAGAGACAGCTTCCTGAGTGGTATGCAGAGAAAGGTAAATAGTCTCTGTGTTTAAGCAATTATTTGCAGACATATGGCCATGCATGACTTCTGTTAACTTTACATATGGTGGTATATCTGGTTGAAGACACATCTCTTATGAATCATCTGGTCTCATCTTGTAGGCATTTCGTTGATCCTGAGTACTGAAATAGTGAAAGCAGATCTTGCTTCAAAGACTCTTGTTAGTGCAGCTGGGGAATCTTTTAAATATCAAACACTTGTTATTGCAACAGGATCCACCGTGAGTCTCTTGGAAACGTGGTTGTGTTGTTTAATTTAAAAATTTTCTTTGGTCATTAGATTAATTTATTGTTTGTGTCTATTCAGGTTTTGAAGTTGTCAGATTTTGGTGTACAAGGTGCTGATTCCAAGAATATCTTTTACTTGAGAGAAATCGATGATGCTGATCAACTTGTGGAAGCATTAAAAGC</genome_strand>
        <mrna_strand>ACCAAAAAAGCTCTAACTATTTTCACTGTGAAAGTTCATCAATGGCGGAGAAATCATTCAAGTATGTGATCGTCGGTGGCGGTGTTTCTGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTATGCTGCTAGAGAATTTGCCAAACAGGGAGTTAAGCCTGGGGAACTGGCTATTATTTCCAAAGAGGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTCCTTATGAACGTCCTGCACTTAGCAAGGCATACCTTTTTCCTGAAG............................................................................................................................................................................................................................................................................................................................................................................GAGCTGCTAGACTCCCAGGATTTCATGTGTGTGTTGGAAGTGGAGGAGAGAGACAGCTTCCTGAGTGGTATGCAGAGAAAG..................................................................................................................................GCATTTCGTTGATCCTGAGTACTGAAATAGTGAAAGCAGATCTTGCTTCAAAGACTCTTGTTAGTGCAGCTGGGGAATCTTTTAAATATCAAACACTTGTTATTGCAACAGGATCCACC......................................................................................GTTTTGAAGTTGTCAGATTTTGGTGTACAAGGTGCTGATTCCAAGAATATCTTTTACTTGAGAGAAATCGATGATGCTGATCAACTTGTGGAAGCATTAAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291640" ref_strand="+" ref_description="SGN-E291640 [cLET-6-P14]">
      <seq>aaaaaagctctaactattttcactgtgaaagttcatcaatggcggagaaatcattcaagtatgtgatcgtcggtggcggtgtttctgctgggtatgctgctagagaatttgccaaacagggagttaagcctggggaactggctattatttccaaagaggcagtggctccttatgaacgtcctgcacttagcaaggcatacctttttcctgaaggagctgctagactcccaggatttcatgtgtgtgttggaagtggaggagagagacagcttcctgagtggtatgcagagaaaggcatttcgttgatcctgagtactgaaatagtgaaagcagatcttgcttcaaagactcttgttagtgcagctggggaatcttttaaatatcaaacacttgttattgcaacaggatccaccgttttgaagttgtcagattttggtgtacaaggtgctgattccaagaatatcttttacttgagagaaatcgatgatgctgatcaacttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="-" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="83311" stop="79819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83011" g_stop="82923" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82922" i_stop="81651" i_length="1272">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81650" g_stop="81579" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="161" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81578" i_stop="81041" i_length="538">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81040" g_stop="80989" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="213" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80988" i_stop="80625" i_length="364">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.698" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80624" g_stop="80544" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="294" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80543" i_stop="80414" i_length="130">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80413" g_stop="80295" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="413" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80294" i_stop="80209" i_length="86">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80208" g_stop="80119" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="503" r_length="90" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="-" ref_id="SGN-E291640" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83011" e_stop="82923"/>
          <exon e_start="81650" e_stop="81579"/>
          <exon e_start="81040" e_stop="80989"/>
          <exon e_start="80624" e_stop="80544"/>
          <exon e_start="80413" e_stop="80295"/>
          <exon e_start="80208" e_stop="80119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGCTCTAACTATTTTCACTGTGAAAGTTCATCAATGGCGGAGAAATCATTCAAGTATGTGATCGTCGGTGGCGGTGTTTCTGCTGTGAGTATTTACCGATCGTCAAATTTAGCTTTATTTATGATTTTTTTGTTCAATAGACTTTAGTTTCTTAGCTTACATGTTTGATTTGAGTTCGGAATTGCGGAATTCGTGTTCTAGTTTTTTTTTTTTTTTGATGATTTTCCGGTGAGAATTATTCGATGTGATGTATAGTTTACAATAGATCTGAAAGTTAGCATAGTGAAATGGCGTTTCGGTTCCTGCATCTGTACATATACACACTGATAAATATTAAGATATAGAAGTTATTTTTTTAAGGATAACTGAGAGAGACAGTGTGGTGCACGGTTCTGTACAAACGTAAATTCATGTATTTTTAGTTTTACTTAATATTTTGATAGTCAACTGTTAGATTATGGAGTTTGAAAGCGAGAATTATTTCCATTTAGTGTTTCAATCTGCTGTGGAATGGTTGATTTGCTTAGGAATGGAGTTAGATCAGAGATGCTTTCAATACGAAGTGATATATTGAGACGGATACACGTGCTCGTATACATCCTTGTGTGTGTGTGTGTTTGTGTTACTTTATTCTTCATTTCAGTTGTTAGATTTTGGAGAGTGATAGCTAGAGTATTGTTGTAGGTAAGCTTATATCCCTTCATTGTTTTGGCTTAATTGTTGAAATGAGTCATTTAGAAATGGAGTTTGGAGGGTTTGAGTACGAAGTGATTTGAAAATGTAGAACCTACTAGTTGTCTAGTTGAGATATTGGGAGGAAGAGATCATGGCATACTTATTGCTATTTACTTTGGATGGTTATAACCAGTTGACACAAAATTTAATGTGATTTGATGAGTTAAAGTATCCCAGTCTCCTCTATTTTGTCCTTTGGCTTAGAAATTGTAGATATCTTCGAATGGTTGGGTAATGAACTCTAAATCTTTCATTAGAATATTGTAACTGGCATATAAGTTCCCTAATTTGTCATTCCTCTTATTTGGGATAACTAATGATTAGGATTCTAGTAGAGATATGTATTGCTACTTCTGCCCACGAATTATTTCTTTGTTTGTATAGAAGATTCCTTTTTGTATTTACTGTAACTGTACGTTTCGTTTTTCCGTGGTATTGACAAAGAGGCTACGTTTACCTCTTTCCCTAGGATGTGGAAAAAGATTTATTAGGAACTAGCTGAAATAAAGGATTATAGTTTTGTTTCTGAAATCTTGTAGGAACAAATCTTCTTGTTTATGCATTCAACTTTTTTGAATTCGTGTTCGTAAATGAATTTAACAAGTTTGGTTGCATTTGCAGGGGTATGCTGCTAGAGAATTTGCCAAACAGGGAGTTAAGCCTGGGGAACTGGCTATTATTTCCAAAGAGGCAGTAAGTATTTTGTACTGCTTTCTTGCCTTCACTAATTTAATATTAGATACTAGTTGCATTTCTGCTTGTGTGGACTTCATTTTGGAAAAGGGATCATTTGTTTTGTTTTCTGTAAATATTGTATCATTGGTCTCTAGAGTTATATAAGAATCTCTAAGTTCTGTGGTTGATGTTATAAGCTAATTTTTCATCAGCTAATACTTGTAAATTTCCTGAAAGTACATTCATGATTCCTTAGCTAATATTGTTAAATTCCCTTTGATATATTCTTGTCTATTTGGATAGGAAAAGTGTCTTGGTACTCTACGATTTGCTTGTAAATTTGTACTAATCTTCCCAAAACGAGTTCTGATCACACCTCTGTTGTCCCTAGTGTGTTAGGCTATGCCTATCTTTCTCTCTCTTTGGTTGATTTTTTTTTGCAACTTATCTACTCTTATGTCCATTCTTTCCTGTTTTACATCTAACAATCTTTCCTTCTTTCAGGAAAATAATGTTAGATTTGATCTGATTGCTAAAAAGTTTTTTTCTACCTCAGGTGGCTCCTTATGAACGTCCTGCACTTAGCAAGGCATACCTTTTTCCTGAAGGCAAGTCTTCTTTTTTCCTTGGATAGTTAATTTTGACTTCCGTAAGTGGTAATGTGGATGTGGACTTGAATAAAAGTCTTATTATGGAAAATGCATATCATCTTTATTTGTAGTTAAAGTCCTTGCAGACACATTTGAAAATATATCTCAACTTTTCTTGTAGAAAGATCATTGCTTGTCCTACTAGCAAAGAAAAAAAATGAAAAAAGAAAAACAATTTGAGCATGATTTATTTTACAGAATGTCATCTCATGTAGTTTTGTCACAAATTGCCAAGTCAAAAAGCTGCTGTACTTTTTAAACATTTGAAATTGACCTGGTATCATAAAATCTTTTCCCTAACACATATCCGTTGATCTACCAGGAGCTGCTAGACTCCCAGGATTTCATGTGTGTGTTGGAAGTGGAGGAGAGAGACAGCTTCCTGAGTGGTATGCAGAGAAAGGTAAATAGTCTCTGTGTTTAAGCAATTATTTGCAGACATATGGCCATGCATGACTTCTGTTAACTTTACATATGGTGGTATATCTGGTTGAAGACACATCTCTTATGAATCATCTGGTCTCATCTTGTAGGCATTTCGTTGATCCTGAGTACTGAAATAGTGAAAGCAGATCTTGCTTCAAAGACTCTTGTTAGTGCAGCTGGGGAATCTTTTAAATATCAAACACTTGTTATTGCAACAGGATCCACCGTGAGTCTCTTGGAAACGTGGTTGTGTTGTTTAATTTAAAAATTTTCTTTGGTCATTAGATTAATTTATTGTTTGTGTCTATTCAGGTTTTGAAGTTGTCAGATTTTGGTGTACAAGGTGCTGATTCCAAGAATATCTTTTACTTGAGAGAAATCGATGATGCTGATCAACTTGTG</genome_strand>
        <mrna_strand>AAAAAAGCTCTAACTATTTTCACTGTGAAAGTTCATCAATGGCGGAGAAATCATTCAAGTATGTGATCGTCGGTGGCGGTGTTTCTGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTATGCTGCTAGAGAATTTGCCAAACAGGGAGTTAAGCCTGGGGAACTGGCTATTATTTCCAAAGAGGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTCCTTATGAACGTCCTGCACTTAGCAAGGCATACCTTTTTCCTGAAG............................................................................................................................................................................................................................................................................................................................................................................GAGCTGCTAGACTCCCAGGATTTCATGTGTGTGTTGGAAGTGGAGGAGAGAGACAGCTTCCTGAGTGGTATGCAGAGAAAG..................................................................................................................................GCATTTCGTTGATCCTGAGTACTGAAATAGTGAAAGCAGATCTTGCTTCAAAGACTCTTGTTAGTGCAGCTGGGGAATCTTTTAAATATCAAACACTTGTTATTGCAACAGGATCCACC......................................................................................GTTTTGAAGTTGTCAGATTTTGGTGTACAAGGTGCTGATTCCAAGAATATCTTTTACTTGAGAGAAATCGATGATGCTGATCAACTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289012" ref_strand="+" ref_description="SGN-E289012 [cLES-17-B16]">
      <seq>aagctctaactattttcactgtgaaagttcatcaatggcggagaaatcattcaagtatgtgatcgtcggtggcggtgtttctgctgggtatgctgctagagaatttgccaaacagggagttaagcctggggaactggctattatttccaaagaggcagtggctccttatgaacgtcctgcacttagcaaggcatacctttttcctgaaggagctgctagactcccaggatttcatgtgtgtgttggaagtggaggagagagacagcttcctgagtggtatgcagagaaaggcatttcgttgatcctgagtactgaaatagtgaaagcagatcttgcttcaaagactcttgttagtgcagctggggaatcttttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="-" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="83307" stop="80029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83007" g_stop="82923" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82922" i_stop="81651" i_length="1272">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81650" g_stop="81579" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="157" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81578" i_stop="81041" i_length="538">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81040" g_stop="80989" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="209" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80988" i_stop="80625" i_length="364">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.698" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80624" g_stop="80544" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="290" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80543" i_stop="80414" i_length="130">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80413" g_stop="80329" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="375" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="-" ref_id="SGN-E289012" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83007" e_stop="82923"/>
          <exon e_start="81650" e_stop="81579"/>
          <exon e_start="81040" e_stop="80989"/>
          <exon e_start="80624" e_stop="80544"/>
          <exon e_start="80413" e_stop="80329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTCTAACTATTTTCACTGTGAAAGTTCATCAATGGCGGAGAAATCATTCAAGTATGTGATCGTCGGTGGCGGTGTTTCTGCTGTGAGTATTTACCGATCGTCAAATTTAGCTTTATTTATGATTTTTTTGTTCAATAGACTTTAGTTTCTTAGCTTACATGTTTGATTTGAGTTCGGAATTGCGGAATTCGTGTTCTAGTTTTTTTTTTTTTTTGATGATTTTCCGGTGAGAATTATTCGATGTGATGTATAGTTTACAATAGATCTGAAAGTTAGCATAGTGAAATGGCGTTTCGGTTCCTGCATCTGTACATATACACACTGATAAATATTAAGATATAGAAGTTATTTTTTTAAGGATAACTGAGAGAGACAGTGTGGTGCACGGTTCTGTACAAACGTAAATTCATGTATTTTTAGTTTTACTTAATATTTTGATAGTCAACTGTTAGATTATGGAGTTTGAAAGCGAGAATTATTTCCATTTAGTGTTTCAATCTGCTGTGGAATGGTTGATTTGCTTAGGAATGGAGTTAGATCAGAGATGCTTTCAATACGAAGTGATATATTGAGACGGATACACGTGCTCGTATACATCCTTGTGTGTGTGTGTGTTTGTGTTACTTTATTCTTCATTTCAGTTGTTAGATTTTGGAGAGTGATAGCTAGAGTATTGTTGTAGGTAAGCTTATATCCCTTCATTGTTTTGGCTTAATTGTTGAAATGAGTCATTTAGAAATGGAGTTTGGAGGGTTTGAGTACGAAGTGATTTGAAAATGTAGAACCTACTAGTTGTCTAGTTGAGATATTGGGAGGAAGAGATCATGGCATACTTATTGCTATTTACTTTGGATGGTTATAACCAGTTGACACAAAATTTAATGTGATTTGATGAGTTAAAGTATCCCAGTCTCCTCTATTTTGTCCTTTGGCTTAGAAATTGTAGATATCTTCGAATGGTTGGGTAATGAACTCTAAATCTTTCATTAGAATATTGTAACTGGCATATAAGTTCCCTAATTTGTCATTCCTCTTATTTGGGATAACTAATGATTAGGATTCTAGTAGAGATATGTATTGCTACTTCTGCCCACGAATTATTTCTTTGTTTGTATAGAAGATTCCTTTTTGTATTTACTGTAACTGTACGTTTCGTTTTTCCGTGGTATTGACAAAGAGGCTACGTTTACCTCTTTCCCTAGGATGTGGAAAAAGATTTATTAGGAACTAGCTGAAATAAAGGATTATAGTTTTGTTTCTGAAATCTTGTAGGAACAAATCTTCTTGTTTATGCATTCAACTTTTTTGAATTCGTGTTCGTAAATGAATTTAACAAGTTTGGTTGCATTTGCAGGGGTATGCTGCTAGAGAATTTGCCAAACAGGGAGTTAAGCCTGGGGAACTGGCTATTATTTCCAAAGAGGCAGTAAGTATTTTGTACTGCTTTCTTGCCTTCACTAATTTAATATTAGATACTAGTTGCATTTCTGCTTGTGTGGACTTCATTTTGGAAAAGGGATCATTTGTTTTGTTTTCTGTAAATATTGTATCATTGGTCTCTAGAGTTATATAAGAATCTCTAAGTTCTGTGGTTGATGTTATAAGCTAATTTTTCATCAGCTAATACTTGTAAATTTCCTGAAAGTACATTCATGATTCCTTAGCTAATATTGTTAAATTCCCTTTGATATATTCTTGTCTATTTGGATAGGAAAAGTGTCTTGGTACTCTACGATTTGCTTGTAAATTTGTACTAATCTTCCCAAAACGAGTTCTGATCACACCTCTGTTGTCCCTAGTGTGTTAGGCTATGCCTATCTTTCTCTCTCTTTGGTTGATTTTTTTTTGCAACTTATCTACTCTTATGTCCATTCTTTCCTGTTTTACATCTAACAATCTTTCCTTCTTTCAGGAAAATAATGTTAGATTTGATCTGATTGCTAAAAAGTTTTTTTCTACCTCAGGTGGCTCCTTATGAACGTCCTGCACTTAGCAAGGCATACCTTTTTCCTGAAGGCAAGTCTTCTTTTTTCCTTGGATAGTTAATTTTGACTTCCGTAAGTGGTAATGTGGATGTGGACTTGAATAAAAGTCTTATTATGGAAAATGCATATCATCTTTATTTGTAGTTAAAGTCCTTGCAGACACATTTGAAAATATATCTCAACTTTTCTTGTAGAAAGATCATTGCTTGTCCTACTAGCAAAGAAAAAAAATGAAAAAAGAAAAACAATTTGAGCATGATTTATTTTACAGAATGTCATCTCATGTAGTTTTGTCACAAATTGCCAAGTCAAAAAGCTGCTGTACTTTTTAAACATTTGAAATTGACCTGGTATCATAAAATCTTTTCCCTAACACATATCCGTTGATCTACCAGGAGCTGCTAGACTCCCAGGATTTCATGTGTGTGTTGGAAGTGGAGGAGAGAGACAGCTTCCTGAGTGGTATGCAGAGAAAGGTAAATAGTCTCTGTGTTTAAGCAATTATTTGCAGACATATGGCCATGCATGACTTCTGTTAACTTTACATATGGTGGTATATCTGGTTGAAGACACATCTCTTATGAATCATCTGGTCTCATCTTGTAGGCATTTCGTTGATCCTGAGTACTGAAATAGTGAAAGCAGATCTTGCTTCAAAGACTCTTGTTAGTGCAGCTGGGGAATCTTTTAA</genome_strand>
        <mrna_strand>AAGCTCTAACTATTTTCACTGTGAAAGTTCATCAATGGCGGAGAAATCATTCAAGTATGTGATCGTCGGTGGCGGTGTTTCTGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTATGCTGCTAGAGAATTTGCCAAACAGGGAGTTAAGCCTGGGGAACTGGCTATTATTTCCAAAGAGGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTCCTTATGAACGTCCTGCACTTAGCAAGGCATACCTTTTTCCTGAAG............................................................................................................................................................................................................................................................................................................................................................................GAGCTGCTAGACTCCCAGGATTTCATGTGTGTGTTGGAAGTGGAGGAGAGAGACAGCTTCCTGAGTGGTATGCAGAGAAAG..................................................................................................................................GCATTTCGTTGATCCTGAGTACTGAAATAGTGAAAGCAGATCTTGCTTCAAAGACTCTTGTTAGTGCAGCTGGGGAATCTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327454" ref_strand="+" ref_description="SGN-E327454 [cTOC-19-J3]">
      <seq>aattattgaggcaaaagatgagctcgtgatgttccaacgttctgaaaggtcaggacaagtacgagaatcaggcagaaaacagaagcctccgttggttagaaaaggacctaataaattcttagaaaatgatattaatcatctttttgcatccatcgatctaagatcatcaaaaagtctggatttgtcagatcatgtgaaaagagatgcctcaaaaaggccgatgaggggtggtggatctcattctccaggaattgggttttcagagccggtctctcttaagcaggccttacggggtttatgcatttcacaggcggcagaaatggcggcaatgaagcggttatccaagcaaccgggttctccaagcattacagaagctggaaggattacaagctcttacaggtttgcagatccaagcgaatccggtttcattcacacagaaagagtagtacaagatgaaagcacttcaggaacactcgacaaagtgccccattaccgccaagaactgtatgttaaatcagcaaaccatagtccccattcttctccacgacttgtcattaagccatccatctcaatgcgccaaaataacagaatagtcccggcagaaagcacgtctaactcttctcaaggccgcctcagtacattggagatccnaagctacagtcaccaggtcaaagtaccctttgttctcctaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="+" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="94922" stop="96216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95222" g_stop="95916" g_length="695"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="694" r_length="694" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="+" ref_id="SGN-E327454" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95222" e_stop="95916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATTGAGGCAAAAGATGAGCTCGTGATGTTCCAACGTTCTGAAAGGTCAGGACAAGTACGAGAATCAGGCAGAAAACAGAAGCCTCCGTTGGTTAGAAAAGGACCTAATAAATTCTTAGAAAATGATATTAATCATCTTTTTGCATCCATCGATCTAAGATCATCAAAAAGTCTGGATTTGTCAGATCATGTGAAAAGAGATGCCTCAAAAAGGCCGATGAGGGGTGGTGGATCTCATTCTCCAGGAATTGGGTTTTCAGAGCCGGTCTCTCTTAAGCAGGCCTTACGGGGTTTATGCATTTCACAGGCGGCAGAAATGGCGGCAATGAAGCGGTTATCCAAGCAACCGGGTTCTCCAAGCATTACAGAAGCTGGAAGGATTACAAGCTCTTACAGGTTTGCAGATCCAAGCGAATCCGGTTTCATTCACACAGAAAGAGTAGTACAAGATGAAAGCACTTCAGGAACACTCGACAAAGTGCCCCATTACCGCCAAGAACTGTATGTTAAATCAGCAAACCATAGTCCCCATTCTTCTCCACGACTTGTCATTAAGCCATCCATCTCAATGCGCCAAAATAACAGAATAGTCCCGGCAGAAAGCACGTCTAACTCTTCTCAAAGGCCGCCTCAGTACATTGGAGATCCAAAGCTACAGTCACCAGGTCAAAGTACCCTTTGTTCTCCTAAAT</genome_strand>
        <mrna_strand>AATTATTGAGGCAAAAGATGAGCTCGTGATGTTCCAACGTTCTGAAAGGTCAGGACAAGTACGAGAATCAGGCAGAAAACAGAAGCCTCCGTTGGTTAGAAAAGGACCTAATAAATTCTTAGAAAATGATATTAATCATCTTTTTGCATCCATCGATCTAAGATCATCAAAAAGTCTGGATTTGTCAGATCATGTGAAAAGAGATGCCTCAAAAAGGCCGATGAGGGGTGGTGGATCTCATTCTCCAGGAATTGGGTTTTCAGAGCCGGTCTCTCTTAAGCAGGCCTTACGGGGTTTATGCATTTCACAGGCGGCAGAAATGGCGGCAATGAAGCGGTTATCCAAGCAACCGGGTTCTCCAAGCATTACAGAAGCTGGAAGGATTACAAGCTCTTACAGGTTTGCAGATCCAAGCGAATCCGGTTTCATTCACACAGAAAGAGTAGTACAAGATGAAAGCACTTCAGGAACACTCGACAAAGTGCCCCATTACCGCCAAGAACTGTATGTTAAATCAGCAAACCATAGTCCCCATTCTTCTCCACGACTTGTCATTAAGCCATCCATCTCAATGCGCCAAAATAACAGAATAGTCCCGGCAGAAAGCACGTCTAACTCTTCTC-AAGGCCGCCTCAGTACATTGGAGATCCNAAGCTACAGTCACCAGGTCAAAGTACCCTTTGTTCTCCTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345938" ref_strand="+" ref_description="SGN-E345938 [cTOF-24-B14]">
      <seq>ccttttctacctacgctctatgcacagtttacatcgcacaacttatcatgcttagttatggagttttgtccaggtggtgatttgcatgtcctcaggcagaagcagccttgcagaaactttcctgaaccagcagcacggttttatgtggctgaagtcctccttgctctggagtatctgcatatgcttggagttgtatatcgggatctgaaacccgagaacatactggtccgggaagatggtcacatcatgcttacagattttgacctctcactcagatgttcagttaatcccactcttttaaaatcatcttcactgggggttgaagctccaaggatttctggtccatgcgcgggctctaattgtattgatccattttgttctggtccgtcatgtcaagtttcttgctttagccccagaattttacctgccacagcacgagcaagaaagctgaaagcagaagctgcagcctttcacagatcattgcctcagcttgtggtagagccaacagaagcgcgatccaactcatttgttggtacacatgaatatttggctcccgagatcattaaaggtgagggtantgggagtgctgttgattggtggattttangtgtttttctttacgagcttctattgggaagacaccatttaaaggcgctggaaatgaagaaactttggccaatgtggtcatgcagaacctcagatttcccgatagcccccttgttagtcttcaggcaagggatctaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="+" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="96978" stop="99707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97278" g_stop="97414" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97415" i_stop="98797" i_length="1383">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98798" g_stop="99407" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="746" r_length="609" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="+" ref_id="SGN-E345938" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97278" e_stop="97414"/>
          <exon e_start="98798" e_stop="99407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTTCTACCTACGCTCTATGCACAGTTTACATCGCACAACTTATCATGCTTAGTTATGGAGTTTTGTCCAGGTGGTGATTTGCATGTCCTCAGGCAGAAGCAGCCTTGCAGAAACTTTCCTGAACCAGCAGCACGGTATGATATGCTCCAATTTTATAAATTATACTCAAAACTACAACAATGAAGCTTTGGTTGGTAAATTTGCGTTTCAGCATAAACATAATGCATCTCTGTTCTCTTTTGATTTGTGCTCGGGGGTGGTAGAATGTATAAATTAGTCTGAAATTGCTACTGGAATAAATGGATTTTGACTTTGCATTGGTGTTTTTTTCTAATTTTATTTACAAAGAACTAATCTATTCAACACCACTTGATTGAGGTAATGTTTAAACCCATTAAATTTTAGCAACCCATCCCCCCACCCACCCCAAAAAAAGGAATGAAGAAGAGAAGAATGCCACCTTTGTCGTGGCTGACGCAGACTTGTCAATAAGTTGGTTAATTTAAGACATTAAATCTAGTATATCCATCACCATAAGCTTAAGTGGTCTAGTATGCGCCGCCTATTATATGTTGGTAAGTAGCTTGATATGGTGGGAGGTTTTGAATTGCTTTAGAATATAGTGGGTCATACTGATTGCTGAGTACAACAGAGGTACTGAATAACTGAGCTTCAGAAGAAAGAAGATCCAGGGCATGGGATGTACCCCCACTAGCTTTCATTTAAGTATTATTACGGAGGGTTCGGAATAGAGAGCTTTTGAGAGGTTTCTACATTTGAGGAGTAGCCTCATGTCTCAGCTTCTTGGTTGCACAGATGTATGGATGACATTTTGTCGATAATCATCTTTTGGTCTAGGTTTCTCTACTTTTCGGTATACTAATTCTATATGGGGATTTCTCCAACAGGAATATAATTATTTACCTTAAATAAGAAAACTTTATTGGTTAAAGCCTTGTAATGTCTTGAGACTTATTGACAAGGCAAATTCTTTAATTTGCTGGTTCATTTCTTTGGTTATATATGTCTTCCTCTGTTCCTCCTAACTCAACTCAACCCACCTGACCACCCCATACCAAAAAGGGGGAAAGGGACAAGGTAGAAATTGAAGTCTGCATTTCCTCCAAAACAAGAAAAAAGATCAAAAATGTCAAAACTGAAGATTGAGAGTTCAATTGATCGGAAAATTGTCTTAGATGTGGATAATTAGTTTATCTGTTTTGGAAACATAGTTAATTGATTAATCTAGTGTTGCTGTGCCAAAATATAAAATCTGAATTTTGCATAAAATAATTTTGTGGTGAGGCTATATTAATTTGACATGGGCCCAGTAGTCAATGCCGTGGGTTGAGAATCACGAGGTCTCTGGTGGTAGGTGGTAGGCATCCATGGGATTAGTCGAGGGGCATGAAAGCTGGCCCTGAAACCACAGTTATAAAAAATAAAAGAAAAAGAGAACTTTGGACTATTGTTGTAAAAGTTGTCTTCGTCATGATGCTAACTCACGGTAATTGCAGGTTTTATGTGGCTGAAGTCCTCCTTGCTCTGGAGTATCTGCATATGCTTGGAGTTGTATATCGGGATCTGAAACCCGAGAACATACTGGTCCGGGAAGATGGTCACATCATGCTTACAGATTTTGACCTCTCACTCAGATGTTCAGTTAATCCCACTCTTTTAAAATCATCTTCACTGGGGGTTGAAGCTCCAAGGATTTCTGGTCCATGCGCGGGCTCTAATTGTATTGATCCATTTTGTTCTGGTCCGTCATGTCAAGTTTCTTGCTTTAGCCCCAGAATTTTACCTGCCACAGCACGAGCAAGAAAGCTGAAAGCAGAAGCTGCAGCCTTTCACAGATCATTGCCTCAGCTTGTGGTAGAGCCAACAGAAGCGCGATCCAACTCATTTGTTGGTACACATGAATATTTGGCTCCCGAGATCATTAAAGGTGAGGGTCATGGGAGTGCTGTTGATTGGTGGACTTTAGGTGTTTTTCTTTACGAGCTTCTATATGGGAAGACACCATTTAAAGGCGCTGGAAATGAAGAAACTTTGGCCAATGTGGTCATGCAGAACCTCAGATTTCCCGATAGCCCCCTTGTTAGTCTTCAGGCAAGGGATCTAATC</genome_strand>
        <mrna_strand>CCTTTTCTACCTACGCTCTATGCACAGTTTACATCGCACAACTTATCATGCTTAGTTATGGAGTTTTGTCCAGGTGGTGATTTGCATGTCCTCAGGCAGAAGCAGCCTTGCAGAAACTTTCCTGAACCAGCAGCACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTATGTGGCTGAAGTCCTCCTTGCTCTGGAGTATCTGCATATGCTTGGAGTTGTATATCGGGATCTGAAACCCGAGAACATACTGGTCCGGGAAGATGGTCACATCATGCTTACAGATTTTGACCTCTCACTCAGATGTTCAGTTAATCCCACTCTTTTAAAATCATCTTCACTGGGGGTTGAAGCTCCAAGGATTTCTGGTCCATGCGCGGGCTCTAATTGTATTGATCCATTTTGTTCTGGTCCGTCATGTCAAGTTTCTTGCTTTAGCCCCAGAATTTTACCTGCCACAGCACGAGCAAGAAAGCTGAAAGCAGAAGCTGCAGCCTTTCACAGATCATTGCCTCAGCTTGTGGTAGAGCCAACAGAAGCGCGATCCAACTCATTTGTTGGTACACATGAATATTTGGCTCCCGAGATCATTAAAGGTGAGGGTANTGGGAGTGCTGTTGATTGGTGGATTTTANGTGTTTTTCTTTACGAGCTTCTAT-TGGGAAGACACCATTTAAAGGCGCTGGAAATGAAGAAACTTTGGCCAATGTGGTCATGCAGAACCTCAGATTTCCCGATAGCCCCCTTGTTAGTCTTCAGGCAAGGGATCTAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366069" ref_strand="+" ref_description="SGN-E366069 [cLPT-15-H19]">
      <seq>aaagctgaaagcagaagctgcagcctttaacagatcattgcctcagcttgtggtagagccaacagaagcgcgatccaactcatttgttggtacacatgaatatttggctcccgagatcattaaaggtgagggtcacgggagtgctgttgattggtggactttaggtgtttttctttacgagcttctatatgggaagacaccatttaaaggtgctggaaatgaagaaactttggccaatgtagtcatgcagaacctcagatttcccgatagcccccttgttagtcttcaggcaagggatctaatcagaggacttctcgtgaaggagcctgagaatcgattaggaacagaaacaggagctgctgagattaaacgacaccccttcttcgatggtatgaactgggcactgatcaggtgtgccattccaccagaaatacctgatctttgtgacattggatttacaaaactagcttatcaggagaagaacaaaatgtttttagagtatagttccaaagagaatttagaatttgaattggtctagtaaatctctataccactctggttatgatgtatcctctacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="+" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="98804" stop="99982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99104" g_stop="99682" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="579" r_length="579" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="+" ref_id="SGN-E366069" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99104" e_stop="99682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTGAAAGCAGAAGCTGCAGCCTTTCACAGATCATTGCCTCAGCTTGTGGTAGAGCCAACAGAAGCGCGATCCAACTCATTTGTTGGTACACATGAATATTTGGCTCCCGAGATCATTAAAGGTGAGGGTCATGGGAGTGCTGTTGATTGGTGGACTTTAGGTGTTTTTCTTTACGAGCTTCTATATGGGAAGACACCATTTAAAGGCGCTGGAAATGAAGAAACTTTGGCCAATGTGGTCATGCAGAACCTCAGATTTCCCGATAGCCCCCTTGTTAGTCTTCAGGCAAGGGATCTAATCAGAGGACTTCTCGTGAAGGAGCCTGAGAATCGATTAGGAACAGAAACAGGAGCTGCTGAGATTAAACGACACCCCTTCTTCGATGGTATGAACTGGGCACTGATAAGGTGTGCCATTCCACCAGAAATACCTGATCTCTGTGACATTGGATTTACAAAACTAGCTTATCAGGAGAAGAACAAAATGTTTTTAGAGTATAGTTCCAAAGAGAATTTAGAATTTGAATTGTTCTAGTAAATCTCTATACCACTCTGGTTATGATGTATCCTCTACAT</genome_strand>
        <mrna_strand>AAAGCTGAAAGCAGAAGCTGCAGCCTTTAACAGATCATTGCCTCAGCTTGTGGTAGAGCCAACAGAAGCGCGATCCAACTCATTTGTTGGTACACATGAATATTTGGCTCCCGAGATCATTAAAGGTGAGGGTCACGGGAGTGCTGTTGATTGGTGGACTTTAGGTGTTTTTCTTTACGAGCTTCTATATGGGAAGACACCATTTAAAGGTGCTGGAAATGAAGAAACTTTGGCCAATGTAGTCATGCAGAACCTCAGATTTCCCGATAGCCCCCTTGTTAGTCTTCAGGCAAGGGATCTAATCAGAGGACTTCTCGTGAAGGAGCCTGAGAATCGATTAGGAACAGAAACAGGAGCTGCTGAGATTAAACGACACCCCTTCTTCGATGGTATGAACTGGGCACTGATCAGGTGTGCCATTCCACCAGAAATACCTGATCTTTGTGACATTGGATTTACAAAACTAGCTTATCAGGAGAAGAACAAAATGTTTTTAGAGTATAGTTCCAAAGAGAATTTAGAATTTGAATTGGTCTAGTAAATCTCTATACCACTCTGGTTATGATGTATCCTCTACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E695218" ref_strand="+" ref_description="SGN-E695218 [LH_Ea05P08](-)">
      <seq>tataatgtatctgcaaagtcgaactattgaggcaaaggaccaagttcgtgtcataaagtgtcatcgtgattcgaatcaagcgtttgaagtttattcttctatcgagcaagcacggagtgtttatggtccaagtcagtcaaaggcattggttaaatcaaaagtgagtagcccatattctccttttgccgatgtggtcagcagtgaaggaatttgctcctggtctcctcagcagatgcgtattttgacttttggaagcagtgagcagtgaaggtctaaacaatgatggaagcaaaatgaaggatgttatgtcccactaatatcattccaataaagctatcgctttccattgataaaatggcagaaccctcacaaggtacaagtggcaagaatcaggactagtcacttttggtcttcaaaatatagaaacgcatgtatatatgatatatctgtgtgtcagcctatcagtaggtgtgctagaaatattaggaccatataataccccggaaacttgtacagctcttctcgtcccttttaaacctatacctatactataagtagatggtggcctgaaatcccataattttggggaaacccctgtaaaaataaggttcaccatgctccattgcttagaatgtgtatagcttttgatttaacttgtatgcctccattaatttgaatatttccttagatatatatacgtagtggaaactgaaattctcaaaaaggggaagtttttgtagcaattcccttgacgttgttgattaatttctcagcagttgtaagtgaaaaccgtttcaagtggatcgtttttgttgtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="-" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="106589" stop="104970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106289" g_stop="106148" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106147" i_stop="105967" i_length="181">
            <donor d_prob="0.600" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105966" g_stop="105274" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="815" r_length="673" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="817" polyA_stop="832"/>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="-" ref_id="SGN-E695218" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>835</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E695218" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106289" e_stop="106148"/>
          <exon e_start="105966" e_stop="105274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAATGTATCTGCAAAGTCGAACTATTGAGGCAAAGGACCAAGTTCGTGTCATAAAGTGTCATCGTGATTCGAATCAAGCGTTTGAAGTTTATTCTTCTATCGAGCAAGCACGGAGTGTTTATGGACCAAGTCAGTCAAAGGTATATGCTTATGATTTGTGTAAGAAAGTATGAGCACTTTGTGATCGAGGACTAAGGTAACTCCAGAGTAGCAAAAGCTACTGAATACATGGAAGATGCACAACAATTATGTGATTATTGCTGCTACTATTTGTCTATTCATGTATATATGTTTGTGTAATTGTTTTCCCCTGATGTTCAGGCATTGGTTAAAACAAAAGTGACTAGACCATATTCTCCTTTTGCCGATGTGGTCAGCAGTGAAGGAATTTGCTCCTGGTCTCCTCAGCAGATGCCTACTTCGACTTTTGGAAGCAGTGAGCAGTGAAGAACTAAACAATGATGGAAGCAAAATGAAGGATGTTATGACCAACTAATATCATTCCAATAAAGCTATCGCTTTCCATTGCTAAAATGGCAGAACCCTCACAAGGTACAAGTGGCAAGAATCAGGACTAGTCACTTTTCGTCTTCAAAATATAGAAATGCATGTATATATGATATATCTGTGTCTCAGCCTATCAGTAGGTGTGCTAGAAATATTAGGACCATATAATACCCCGGAAACTTGTACAGCTCTTCTCGTCCCTTTTAAACCTATACCTATACTATAAGTAGATGGTGGCCTGATATCCCATAATTCTGGGGAAAACCCTGT-AAACTAAGCTTCACCATGCTCCATTGCTTAGAATGTGTATAGCTTTTGATTTAACTTGGATGCCTCCATTAATCTGAATATTTCCTTAGATATATATATATATATACGTAGTCTATGTACCAAGTCGAAACTGAAATTCTCAAAAAAGGGAAGTTTTTGTAGCAATTCCCTTGATGTTGTTGACTAATTTCTCAGCAGTTGTAAGTGAATTCCATTTCAAGTGGATCGTTTTTGTTT</genome_strand>
        <mrna_strand>TATAATGTATCTGCAAAGTCGAACTATTGAGGCAAAGGACCAAGTTCGTGTCATAAAGTGTCATCGTGATTCGAATCAAGCGTTTGAAGTTTATTCTTCTATCGAGCAAGCACGGAGTGTTTATGGTCCAAGTCAGTCAAAG.....................................................................................................................................................................................GCATTGGTTAAATCAAAAGTGAGTAGCCCATATTCTCCTTTTGCCGATGTGGTCAGCAGTGAAGGAATTTGCTCCTGGTCTCCTCAGCAGATGCGTATTTTGACTTTTGGAAGCAGTGAGCAGTGAAGGTCTAAACAATGATGGAAGCAAAATGAAGGATGTTATGTCCCACTAATATCATTCCAATAAAGCTATCGCTTTCCATTGATAAAATGGCAGAACCCTCACAAGGTACAAGTGGCAAGAATCAGGACTAGTCACTTTTGGTCTTCAAAATATAGAAACGCATGTATATATGATATATCTGTGTGTCAGCCTATCAGTAGGTGTGCTAGAAATATTAGGACCATATAATACCCCGGAAACTTGTACAGCTCTTCTCGTCCCTTTTAAACCTATACCTATACTATAAGTAGATGGTGGCCTGAAATCCCATAATTTTGGGGAAACCCCTGTAAAAATAAGGTTCACCATGCTCCATTGCTTAGAATGTGTATAGCTTTTGATTTAACTTGTATGCCTCCATTAATTTGAATATTTCCTTAG--------ATATATATAC---G--TA-GT-----G--GAAACTGAAATTCTCAAAAAGGGGAAGTTTTTGTAGCAATTCCCTTGACGTTGTTGATTAATTTCTCAGCAGTTGTAAGTGAAAACCGTTTCAAGTGGATCGTTTTTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E691378" ref_strand="+" ref_description="SGN-E691378 [LH_Ea05P08]">
      <seq>tcggcttataatgtatctgcaaagtcgaactattgaggcaaaggaccaagttcgtgtcataaagtgtcatcgtgattcgaatcaagcgtttgaagtttattcttctatcgagcaagcacggagtgtttatggaccaagtcagtcaaaggcattggttaaaacaaaagtgactagaccatattctccttttgccgatgtggtcagcagtgaaggaatttgctcctggtctcctcagcagatgcctacttcgacttttggaagcagtgagcagtgaaggactaaacaatgatggaagcaaaatgaaggatgttatgaccaactaatatcattccaataaagctatcgctttccattgctaaaatggcagaaccctcacaaggtacaagtggcaagaatcaggactaatcacttttcctcttccaaatataaaaatggctggataaatgaaaataccggggggccaccctatcagaaggggggctaaaaatattaggaccatatatataccccggaaacttgtacagctcttctcgtcccttttaaacctatacctatactataagtagatggtggcctgaaatcccataattctggggaaaaccctgtaaaactaagcttcaccatgctccattgcttagaatgtgtatagcttttgatttaacttgtatgcctccattaatctgaatatttccttagatatatatacgtagtcgaaactgaaattctcaaaaagggggaggtttttgtagcaaattcccttgatgttgttgactaatttctcagcaagttgtaagtgaattccatttcaagtgaatcgttttttgttgttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="-" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="106594" stop="104970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106295" g_stop="106148" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106147" i_stop="105967" i_length="181">
            <donor d_prob="0.600" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105966" g_stop="105278" g_length="689"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="822" r_length="674" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="830" polyA_stop="847"/>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="-" ref_id="SGN-E691378" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>837</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106295" e_stop="106148"/>
          <exon e_start="105966" e_stop="105278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGCTTATAATGTATCTGCAAAGTCGAACTATTGAGGCAAAGGACCAAGTTCGTGTCATAAAGTGTCATCGTGATTCGAATCAAGCGTTTGAAGTTTATTCTTCTATCGAGCAAGCACGGAGTGTTTATGGACCAAGTCAGTCAAAGGTATATGCTTATGATTTGTGTAAGAAAGTATGAGCACTTTGTGATCGAGGACTAAGGTAACTCCAGAGTAGCAAAAGCTACTGAATACATGGAAGATGCACAACAATTATGTGATTATTGCTGCTACTATTTGTCTATTCATGTATATATGTTTGTGTAATTGTTTTCCCCTGATGTTCAGGCATTGGTTAAAACAAAAGTGACTAGACCATATTCTCCTTTTGCCGATGTGGTCAGCAGTGAAGGAATTTGCTCCTGGTCTCCTCAGCAGATGCCTACTTCGACTTTTGGAAGCAGTGAGCAGTGAAGAACTAAACAATGATGGAAGCAAAATGAAGGATGTTATGACCAACTAATATCATTCCAATAAAGCTATCGCTTTCCATTGCTAAAATGGCAGAACCCTCACAAGGTACAAGTGGCAAGAATCAGGACTAGTCACTTTTCGTCTTCAAAATATAGAAATGCATGTATATATG-ATATATCTGTGTCTCAGCCTATCAGTAGGTGTGCTAGAAATATTAGGACCATATA-ATACCCCGGAAACTTGTACAGCTCTTCTCGTCCCTTTTAAACCTATACCTATACTATAAGTAGATGGTGGCCTGATATCCCATAATTCTGGGGAAAACCCTGT-AAACTAAGCTTCACCATGCTCCATTGCTTAGAATGTGTATAGCTTTTGATTTAACTTGGATGCCTCCATTAATCTGAATATTTCCTTAGATATATATATATATATACGTAGTCTATGTACCAAGTCGAAACTGAAATTCTCAAAAA-AGGGAAGTTTTTGTAGC-AATTCCCTTGATGTTGTTGACTAATTTCTCAGC-AGTTGTAAGTGAATTCCATTTCAAGTGGATCGTTTTT</genome_strand>
        <mrna_strand>TCGGCTTATAATGTATCTGCAAAGTCGAACTATTGAGGCAAAGGACCAAGTTCGTGTCATAAAGTGTCATCGTGATTCGAATCAAGCGTTTGAAGTTTATTCTTCTATCGAGCAAGCACGGAGTGTTTATGGACCAAGTCAGTCAAAG.....................................................................................................................................................................................GCATTGGTTAAAACAAAAGTGACTAGACCATATTCTCCTTTTGCCGATGTGGTCAGCAGTGAAGGAATTTGCTCCTGGTCTCCTCAGCAGATGCCTACTTCGACTTTTGGAAGCAGTGAGCAGTGAAGGACTAAACAATGATGGAAGCAAAATGAAGGATGTTATGACCAACTAATATCATTCCAATAAAGCTATCGCTTTCCATTGCTAAAATGGCAGAACCCTCACAAGGTACAAGTGGCAAGAATCAGGACTAATCACTTTTCCTCTTCCAAATATAAAAATGGCTGGATAAATGAAAATACCGGGGGGCCACCCTATCAGAAGGGGGGCTAAAAATATTAGGACCATATATATACCCCGGAAACTTGTACAGCTCTTCTCGTCCCTTTTAAACCTATACCTATACTATAAGTAGATGGTGGCCTGAAATCCCATAATTCTGGGGAAAACCCTGTAAAACTAAGCTTCACCATGCTCCATTGCTTAGAATGTGTATAGCTTTTGATTTAACTTGTATGCCTCCATTAATCTGAATATTTCCTTAG----------ATATATA--TA--C---GT----AGTCGAAACTGAAATTCTCAAAAAGGGGGAGGTTTTTGTAGCAAATTCCCTTGATGTTGTTGACTAATTTCTCAGCAAGTTGTAAGTGAATTCCATTTCAAGTGAATCGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E377909" ref_strand="+" ref_description="SGN-E377909 [TUS-20-H24]">
      <seq>cagcagtgaaggaatttgctcctggtctcctcagcagatgcctacttcgacttttggaagcagtgagcagtgaagaactaaacaatgatggaagcaaaatgaaggatgttatgaccaactaatatcattccaataaagctatcgctttccattgctaaaatggcagaaccctcacaaggtacaagtggcaagaatcaggactagtcacttttcgtcttcaaaatatagaaatgcatgtatatatgatatatctgtgtctcagcctatcagtaggtgtgctagaaatattaggaccatataataccccggaaacttgtacagctcttctcgtcccttttaaacctatacctatactataagtagatggtggcctgatatcccataattctggggaaaaccctgtaaactaagcttcaccatgctccattgcttagaatgtgtatagcttttgatttaacttggatgcctccattaatctgaatatttccttagatatatatatatatatacgtagtctatgtaccaagtcgaaactgaaattctcaaaaaagggaagtttttgtagcnnanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="-" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="106213" stop="105048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105913" g_stop="105347" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="567" r_length="567" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="569" polyA_stop="605"/>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="-" ref_id="SGN-E377909" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105913" e_stop="105347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAGTGAAGGAATTTGCTCCTGGTCTCCTCAGCAGATGCCTACTTCGACTTTTGGAAGCAGTGAGCAGTGAAGAACTAAACAATGATGGAAGCAAAATGAAGGATGTTATGACCAACTAATATCATTCCAATAAAGCTATCGCTTTCCATTGCTAAAATGGCAGAACCCTCACAAGGTACAAGTGGCAAGAATCAGGACTAGTCACTTTTCGTCTTCAAAATATAGAAATGCATGTATATATGATATATCTGTGTCTCAGCCTATCAGTAGGTGTGCTAGAAATATTAGGACCATATAATACCCCGGAAACTTGTACAGCTCTTCTCGTCCCTTTTAAACCTATACCTATACTATAAGTAGATGGTGGCCTGATATCCCATAATTCTGGGGAAAACCCTGTAAACTAAGCTTCACCATGCTCCATTGCTTAGAATGTGTATAGCTTTTGATTTAACTTGGATGCCTCCATTAATCTGAATATTTCCTTAGATATATATATATATATACGTAGTCTATGTACCAAGTCGAAACTGAAATTCTCAAAAAAGGGAAGTTTTTGTAGCA</genome_strand>
        <mrna_strand>CAGCAGTGAAGGAATTTGCTCCTGGTCTCCTCAGCAGATGCCTACTTCGACTTTTGGAAGCAGTGAGCAGTGAAGAACTAAACAATGATGGAAGCAAAATGAAGGATGTTATGACCAACTAATATCATTCCAATAAAGCTATCGCTTTCCATTGCTAAAATGGCAGAACCCTCACAAGGTACAAGTGGCAAGAATCAGGACTAGTCACTTTTCGTCTTCAAAATATAGAAATGCATGTATATATGATATATCTGTGTCTCAGCCTATCAGTAGGTGTGCTAGAAATATTAGGACCATATAATACCCCGGAAACTTGTACAGCTCTTCTCGTCCCTTTTAAACCTATACCTATACTATAAGTAGATGGTGGCCTGATATCCCATAATTCTGGGGAAAACCCTGTAAACTAAGCTTCACCATGCTCCATTGCTTAGAATGTGTATAGCTTTTGATTTAACTTGGATGCCTCCATTAATCTGAATATTTCCTTAGATATATATATATATATACGTAGTCTATGTACCAAGTCGAAACTGAAATTCTCAAAAAAGGGAAGTTTTTGTAGCN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E377908" ref_strand="+" ref_description="SGN-E377908 [TUS-20-H24](-)">
      <seq>tcagcagtgaaggaatttgctcctggtttcctcagcagatgcctacttcgacttttggaagcagtgagcagtgaagaactaaacaatgatggaagcaaaatgaaggatgttatgaccaactaatatcattccaataaagctatcgctttccattgctaaaatggcagaaccctcccaaggtacaagtggcaagaatcaggactagtcactttttgttttcaaaatatagaaatgcatgtatatatgatatatttgtgtttcagcctatcagtaggtgtgctaaaaatattaggaccatataataccccggaaacttgtacagctcttttcgtcccttttaaacctatacctatactataagtaaatggtggcctgatatcccataattttggggaaaaccctgtaaaataagcttccccatgctccattgcttaaaatgtgtatagcttttgatttaacttggatgcctccattaatttgaatatttccttagatatatatatatatatacgtagtttatgtaccaagtcgaaactgaaattttcaaaaaagggaagtttttgtagcccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="-" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="106214" stop="105048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105914" g_stop="105350" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="565" r_length="565" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="570" polyA_stop="605"/>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="-" ref_id="SGN-E377908" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105914" e_stop="105350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCAGTGAAGGAATTTGCTCCTGGTCTCCTCAGCAGATGCCTACTTCGACTTTTGGAAGCAGTGAGCAGTGAAGAACTAAACAATGATGGAAGCAAAATGAAGGATGTTATGACCAACTAATATCATTCCAATAAAGCTATCGCTTTCCATTGCTAAAATGGCAGAACCCTCACAAGGTACAAGTGGCAAGAATCAGGACTAGTCACTTTTCGTCTTCAAAATATAGAAATGCATGTATATATGATATATCTGTGTCTCAGCCTATCAGTAGGTGTGCTAGAAATATTAGGACCATATAATACCCCGGAAACTTGTACAGCTCTTCTCGTCCCTTTTAAACCTATACCTATACTATAAGTAGATGGTGGCCTGATATCCCATAATTCTGGGGAAAACCCTGTAAACTAAGCTTCACCATGCTCCATTGCTTAGAATGTGTATAGCTTTTGATTTAACTTGGATGCCTCCATTAATCTGAATATTTCCTTAGATATATATATATATATACGTAGTCTATGTACCAAGTCGAAACTGAAATTCTCAAAAAAGGGAAGTTTTTGTA</genome_strand>
        <mrna_strand>TCAGCAGTGAAGGAATTTGCTCCTGGTTTCCTCAGCAGATGCCTACTTCGACTTTTGGAAGCAGTGAGCAGTGAAGAACTAAACAATGATGGAAGCAAAATGAAGGATGTTATGACCAACTAATATCATTCCAATAAAGCTATCGCTTTCCATTGCTAAAATGGCAGAACCCTCCCAAGGTACAAGTGGCAAGAATCAGGACTAGTCACTTTTTGTTTTCAAAATATAGAAATGCATGTATATATGATATATTTGTGTTTCAGCCTATCAGTAGGTGTGCTAAAAATATTAGGACCATATAATACCCCGGAAACTTGTACAGCTCTTTTCGTCCCTTTTAAACCTATACCTATACTATAAGTAAATGGTGGCCTGATATCCCATAATTTTGGGGAAAACCCTGTAAAATAAGCTTCCCCATGCTCCATTGCTTAAAATGTGTATAGCTTTTGATTTAACTTGGATGCCTCCATTAATTTGAATATTTCCTTAGATATATATATATATATACGTAGTTTATGTACCAAGTCGAAACTGAAATTTTCAAAAAAGGGAAGTTTTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E233211" ref_strand="+" ref_description="SGN-E233211 [cLED-6-N14]">
      <seq>cagcagtgaaggaatttgctcctggtctcctcagcagatgcctacttcgacttttggaagcagtgagcagtgaagaactaaacaatgatggaagcaaaatgaaggatgttatgaccaactaatatcattccaataaagctatcgctttccattgctaaaatggcagaaccctcacaaggtacaagtggcaagaatcaggactagtcacttttcgtcttcaaaatatagaaatgcatgtatatatgatatatctgtgtctcagcctatcagtaggtgtgctagaaatattaggaccatataataccccggaaacttgtacagctcttctcgtcccttttaaacctatacctatactataagtagatggtggcctgatatcccataattctggggaaaaccctgtaaactaagcttcaccatgctccattgcttagaatgtgtatagcttttgatttaacttggatgcctccattaatctgaatatttccttagatatatatatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="-" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="106213" stop="105109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105913" g_stop="105409" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="-" ref_id="SGN-E233211" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105913" e_stop="105409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAGTGAAGGAATTTGCTCCTGGTCTCCTCAGCAGATGCCTACTTCGACTTTTGGAAGCAGTGAGCAGTGAAGAACTAAACAATGATGGAAGCAAAATGAAGGATGTTATGACCAACTAATATCATTCCAATAAAGCTATCGCTTTCCATTGCTAAAATGGCAGAACCCTCACAAGGTACAAGTGGCAAGAATCAGGACTAGTCACTTTTCGTCTTCAAAATATAGAAATGCATGTATATATGATATATCTGTGTCTCAGCCTATCAGTAGGTGTGCTAGAAATATTAGGACCATATAATACCCCGGAAACTTGTACAGCTCTTCTCGTCCCTTTTAAACCTATACCTATACTATAAGTAGATGGTGGCCTGATATCCCATAATTCTGGGGAAAACCCTGTAAACTAAGCTTCACCATGCTCCATTGCTTAGAATGTGTATAGCTTTTGATTTAACTTGGATGCCTCCATTAATCTGAATATTTCCTTAGATATATATATATA</genome_strand>
        <mrna_strand>CAGCAGTGAAGGAATTTGCTCCTGGTCTCCTCAGCAGATGCCTACTTCGACTTTTGGAAGCAGTGAGCAGTGAAGAACTAAACAATGATGGAAGCAAAATGAAGGATGTTATGACCAACTAATATCATTCCAATAAAGCTATCGCTTTCCATTGCTAAAATGGCAGAACCCTCACAAGGTACAAGTGGCAAGAATCAGGACTAGTCACTTTTCGTCTTCAAAATATAGAAATGCATGTATATATGATATATCTGTGTCTCAGCCTATCAGTAGGTGTGCTAGAAATATTAGGACCATATAATACCCCGGAAACTTGTACAGCTCTTCTCGTCCCTTTTAAACCTATACCTATACTATAAGTAGATGGTGGCCTGATATCCCATAATTCTGGGGAAAACCCTGTAAACTAAGCTTCACCATGCTCCATTGCTTAGAATGTGTATAGCTTTTGATTTAACTTGGATGCCTCCATTAATCTGAATATTTCCTTAGATATATATATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246582" ref_strand="+" ref_description="SGN-E246582 [cLEF-45-N15]">
      <seq>aagacctggtgacaatggaattgactcatggaaagaaagatcttccaaatggtcccccttcacggcttataatgtatctgcaaagtcgaactattgaggcaaaggaccaagttcgtgtcataaagtgtcatcgtgattcgaatcaagcgtttgaagtttattcttctatcgagcaagcacggagtgtttatggaccaagtcagtcaaaggcattggttaaaacaaaagtgactagaccatattctccttttgccgatgtggtcagcagtgaaggaatttgctcctggtctcctcagcagatgcctacttcgacttttggaagcagtgagcagtgaagaactaaacaatgatggaagcaaaatgaaggatgttatgaccaactaatatcattccaataaagctatcgctttccattgctaaaatggcagaaccctcacaaggtacaagtggcaagaatcaggactagtcacttttcgtcttcaaaatatagaaatgcatgtatatatgatatatctgtgtctcagcctatcagtaggtgtgctagaaatattaggaccatataataccccggaaacttgtacagctcttctcgtcccttttaaacctatacctatactataagtagatgggtggcctgatatcccataattctggggaaaaccctgtaaactaagcttcaccatgctccattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="-" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="106656" stop="105184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106356" g_stop="106148" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106147" i_stop="105967" i_length="181">
            <donor d_prob="0.600" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105966" g_stop="105484" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="693" r_length="484" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="-" ref_id="SGN-E246582" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106356" e_stop="106148"/>
          <exon e_start="105966" e_stop="105484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACCTGGTGACAATGGAATTGACTCATGGAAAGAAAGATCTTCCAAATGGTCCCCCTTCACGGCTTATAATGTATCTGCAAAGTCGAACTATTGAGGCAAAGGACCAAGTTCGTGTCATAAAGTGTCATCGTGATTCGAATCAAGCGTTTGAAGTTTATTCTTCTATCGAGCAAGCACGGAGTGTTTATGGACCAAGTCAGTCAAAGGTATATGCTTATGATTTGTGTAAGAAAGTATGAGCACTTTGTGATCGAGGACTAAGGTAACTCCAGAGTAGCAAAAGCTACTGAATACATGGAAGATGCACAACAATTATGTGATTATTGCTGCTACTATTTGTCTATTCATGTATATATGTTTGTGTAATTGTTTTCCCCTGATGTTCAGGCATTGGTTAAAACAAAAGTGACTAGACCATATTCTCCTTTTGCCGATGTGGTCAGCAGTGAAGGAATTTGCTCCTGGTCTCCTCAGCAGATGCCTACTTCGACTTTTGGAAGCAGTGAGCAGTGAAGAACTAAACAATGATGGAAGCAAAATGAAGGATGTTATGACCAACTAATATCATTCCAATAAAGCTATCGCTTTCCATTGCTAAAATGGCAGAACCCTCACAAGGTACAAGTGGCAAGAATCAGGACTAGTCACTTTTCGTCTTCAAAATATAGAAATGCATGTATATATGATATATCTGTGTCTCAGCCTATCAGTAGGTGTGCTAGAAATATTAGGACCATATAATACCCCGGAAACTTGTACAGCTCTTCTCGTCCCTTTTAAACCTATACCTATACTATAAGTAGAT-GGTGGCCTGATATCCCATAATTCTGGGGAAAACCCTGTAAACTAAGCTTCACCATGCTCCATTGC</genome_strand>
        <mrna_strand>AAGACCTGGTGACAATGGAATTGACTCATGGAAAGAAAGATCTTCCAAATGGTCCCCCTTCACGGCTTATAATGTATCTGCAAAGTCGAACTATTGAGGCAAAGGACCAAGTTCGTGTCATAAAGTGTCATCGTGATTCGAATCAAGCGTTTGAAGTTTATTCTTCTATCGAGCAAGCACGGAGTGTTTATGGACCAAGTCAGTCAAAG.....................................................................................................................................................................................GCATTGGTTAAAACAAAAGTGACTAGACCATATTCTCCTTTTGCCGATGTGGTCAGCAGTGAAGGAATTTGCTCCTGGTCTCCTCAGCAGATGCCTACTTCGACTTTTGGAAGCAGTGAGCAGTGAAGAACTAAACAATGATGGAAGCAAAATGAAGGATGTTATGACCAACTAATATCATTCCAATAAAGCTATCGCTTTCCATTGCTAAAATGGCAGAACCCTCACAAGGTACAAGTGGCAAGAATCAGGACTAGTCACTTTTCGTCTTCAAAATATAGAAATGCATGTATATATGATATATCTGTGTCTCAGCCTATCAGTAGGTGTGCTAGAAATATTAGGACCATATAATACCCCGGAAACTTGTACAGCTCTTCTCGTCCCTTTTAAACCTATACCTATACTATAAGTAGATGGGTGGCCTGATATCCCATAATTCTGGGGAAAACCCTGTAAACTAAGCTTCACCATGCTCCATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266121" ref_strand="+" ref_description="SGN-E266121 [cLEI-6-L1]">
      <seq>gaaaatcacttcttgctgcctaaaggaagaataattcttgttactcaccggagggtcattctgttgcaacaaccttccaatcttattgcacaaaagaagttcaatccggctagagatccatgtgcagttttatgggatgtcctcttggaagacctggtgacaatggaattgactcatggaaagaaagatcttccaaatggtcccccttcacggcttataatgtatctgcaaagtcgaactattgaggcaaaggaccaagttcgtgtcataaagtgtcatcgtgattcgaatcaagcgtttgaagtttattcttctatcgagcaagcacggagtgtttatggaccaagtcagtcaaaggcattggttaaaacaaaagtgactagaccatattctccttttgccgatgtggtcagcagtgaaggaatttgctcctggtctcctcagcagatgcctacttcgacttttggaagcagtgagcagtgaagaactaaacaatgatggaagcaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0018D02-1gE4x/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0018D02.2" temp_strand="-" temp_description="C09SLm0018D02.2  AC233063.2 htgs_phase:2 submitted_to_sgn_as:gb|AC233063| upload_account_name:spain (1 - 128047)">
        <position start="106930" stop="105513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106630" g_stop="106562" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106561" i_stop="106436" i_length="126">
            <donor d_prob="0.606" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106435" g_stop="106148" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="357" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106147" i_stop="105967" i_length="181">
            <donor d_prob="0.600" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105966" g_stop="105813" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="511" r_length="154" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0018D02.2" gen_strand="-" ref_id="SGN-E266121" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0018D02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106630" e_stop="106562"/>
          <exon e_start="106435" e_stop="106148"/>
          <exon e_start="105966" e_stop="105813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATCACTTCTTGCTGCCTAAAGGAAGAATAATTCTTGTTACTCACCGGAGGGTCATTCTGTTGCAAGTAAGTGAATAGACAGGTCACTTGAATAATTGAAAAAGGGGATTAGAACTCTTTTGCCATCCCAGTTCTGCACTATTTCGTGCACTTGTCCCCTCACTGAAAATATTTTCTACTATTTGTTGCCAGCAACCTTCCAATCTTATTGCACAAAAGAAGTTCAATCCGGCTAGAGATCCATGTGCAGTTTTATGGGATGTCCTCTTGGAAGACCTGGTGACAATGGAATTGACTCATGGAAAGAAAGATCTTCCAAATGGTCCCCCTTCACGGCTTATAATGTATCTGCAAAGTCGAACTATTGAGGCAAAGGACCAAGTTCGTGTCATAAAGTGTCATCGTGATTCGAATCAAGCGTTTGAAGTTTATTCTTCTATCGAGCAAGCACGGAGTGTTTATGGACCAAGTCAGTCAAAGGTATATGCTTATGATTTGTGTAAGAAAGTATGAGCACTTTGTGATCGAGGACTAAGGTAACTCCAGAGTAGCAAAAGCTACTGAATACATGGAAGATGCACAACAATTATGTGATTATTGCTGCTACTATTTGTCTATTCATGTATATATGTTTGTGTAATTGTTTTCCCCTGATGTTCAGGCATTGGTTAAAACAAAAGTGACTAGACCATATTCTCCTTTTGCCGATGTGGTCAGCAGTGAAGGAATTTGCTCCTGGTCTCCTCAGCAGATGCCTACTTCGACTTTTGGAAGCAGTGAGCAGTGAAGAACTAAACAATGATGGAAGCAAAATG</genome_strand>
        <mrna_strand>GAAAATCACTTCTTGCTGCCTAAAGGAAGAATAATTCTTGTTACTCACCGGAGGGTCATTCTGTTGCAA..............................................................................................................................CAACCTTCCAATCTTATTGCACAAAAGAAGTTCAATCCGGCTAGAGATCCATGTGCAGTTTTATGGGATGTCCTCTTGGAAGACCTGGTGACAATGGAATTGACTCATGGAAAGAAAGATCTTCCAAATGGTCCCCCTTCACGGCTTATAATGTATCTGCAAAGTCGAACTATTGAGGCAAAGGACCAAGTTCGTGTCATAAAGTGTCATCGTGATTCGAATCAAGCGTTTGAAGTTTATTCTTCTATCGAGCAAGCACGGAGTGTTTATGGACCAAGTCAGTCAAAG.....................................................................................................................................................................................GCATTGGTTAAAACAAAAGTGACTAGACCATATTCTCCTTTTGCCGATGTGGTCAGCAGTGAAGGAATTTGCTCCTGGTCTCCTCAGCAGATGCCTACTTCGACTTTTGGAAGCAGTGAGCAGTGAAGAACTAAACAATGATGGAAGCAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>72</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="7575" PGL_stop="7216"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7575" e_stop="7216"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="7575" e_stop="7216" e_length="360"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7575" stop="7216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7575" stop="7216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354793" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCATTGCTATGTACATTTATGAGCCAATAATTCTTGGTAGAGAAACAAGTATTGACATATGGATTATGGAGAAAAATGGCTATTGGACTAAAAATATGAGAATTGGCCCTTTTTTAAATATCAAAAGATCAATTGGATATGGAAAAAATGGGGAAATTTTTCTTGAAGTTGTTACATATCAATTGGACATATTTGATCCTTTTTTAAAGAACAATAAGGTTCTTAGCCAACAAAAAAATGGCTACTCTTTGCAAGCTTTTGCTTACAATGAAAGCTTAGTTTCATTGAAAAATATTTCATTCTTGTAATTTAGTTGGTTAATGATATAAATGAAAATGATGGCTATAATTTAAATTCTA</gDNA_template>
            <first_frame> F  I  A  M  Y  I  Y  E  P  I  I  L  G  R  E  T  S  I  D  I  W  I  M  E  K  N  G  Y  W  T  K  N  M  R  I  G  P  F  L  N  I  K  R  S  I  G  Y  G  K  N  G  E  I  F  L  E  V  V  T  Y  Q  L  D  I  F  D  P  F  L  K  N  N  K  V  L  S  Q  Q  K  N  G  Y  S  L  Q  A  F  A  Y  N  E  S  L  V  S  L  K  N  I  S  F  L  *  F  S  W  L  M  I  *  M  K  M  M  A  I  I  *  I  L </first_frame>
            <second_frame>  S  L  L  C  T  F  M  S  Q  *  F  L  V  E  K  Q  V  L  T  Y  G  L  W  R  K  M  A  I  G  L  K  I  *  E  L  A  L  F  *  I  S  K  D  Q  L  D  M  E  K  M  G  K  F  F  L  K  L  L  H  I  N  W  T  Y  L  I  L  F  *  R  T  I  R  F  L  A  N  K  K  M  A  T  L  C  K  L  L  L  T  M  K  A  *  F  H  *  K  I  F  H  S  C  N  L  V  G  *  *  Y  K  *  K  *  W  L  *  F  K  F   </second_frame>
            <third_frame>   H  C  Y  V  H  L  *  A  N  N  S  W  *  R  N  K  Y  *  H  M  D  Y  G  E  K  W  L  L  D  *  K  Y  E  N  W  P  F  F  K  Y  Q  K  I  N  W  I  W  K  K  W  G  N  F  S  *  S  C  Y  I  S  I  G  H  I  *  S  F  F  K  E  Q  *  G  S  *  P  T  K  K  W  L  L  F  A  S  F  C  L  Q  *  K  L  S  F  I  E  K  Y  F  I  L  V  I  *  L  V  N  D  I  N  E  N  D  G  Y  N  L  N  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0018D02.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7575" stop="7267"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FIAMYIYEPIILGRETSIDIWIMEKNGYWTKNMRIGPFLNIKRSIGYGKNGEIFLEVVTYQLDIFDPFLKNNKVLSQQKNGYSLQAFAYNESLVSLKNISFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="33714" PGL_stop="22093"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33714" e_stop="33432"/>
            <exon e_start="23236" e_stop="23119"/>
            <exon e_start="22403" e_stop="22093"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.960" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="33714" e_stop="33432" e_length="283"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="33431" i_stop="23237" i_length="10195"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="23236" e_stop="23119" e_length="118"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.960">
            <gDNA_intron_boundary i_start="23118" i_stop="22404" i_length="715"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22403" e_stop="22093" e_length="311"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33714" stop="33432"/>
              <exon start="23236" stop="23119"/>
              <exon start="22403" stop="22270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33714" stop="33432"/>
              <exon start="23236" stop="23119"/>
              <exon start="22403" stop="22272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33713" stop="33432"/>
              <exon start="23236" stop="23119"/>
              <exon start="22403" stop="22106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33608" stop="33432"/>
              <exon start="23236" stop="23119"/>
              <exon start="22403" stop="22211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33607" stop="33432"/>
              <exon start="23236" stop="23119"/>
              <exon start="22403" stop="22093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23164" stop="23119"/>
              <exon start="22403" stop="22113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268561" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAATTTCAGGTAATTATATTTACAGCCCCCATCTTTCAAAAGAGGAATAACAGGATCCATTTGCGTTAGTGAAGAACCTCCAAAACGGATCGATGGTGTCTCCGGTGCTAGCAAAGGCGGCGGAGAGAATCGGAAATTCAGTCCGGCGGCAAGCAATAACTATTACAGACGCCGCCGCTGCTCGAATTAGCAATCTCCTTCAGCAACGGCAGCGTCCTTTTCTTAAGCTCGGCGTTAAAGCTCGTGGATGCAACGGCTTATCCTACACGCTCAATTACGCCG : ATGAGAAGGGTAAATTTGATGAGTTGATTGAAGAGAAGGGAGTAAAAATACTTATTGATCCTAAGGCATTGATGCACGTGATTGGTACCAAGATGGATTTTGTAGATGATAAATTGAG : GTCTGAGTTCATTTTTATTAATCCCAACTCGAAAGGGCAATGCGGTTGTGGTGAGTCTTTCATGACAACAGCCAGTAAAGGTGCTGAAAAGTGAGATGATTTTAATGAGACATGATGTTTATAATGTACTCATTAGGTAGGCGAACAATGAAATAAAGATTTATTCCCAGAATTAAAATGTTATATCTTATACATGTCTTTGTATTGTGTTTATTAGATGTAAAAAATTGCCAGTCTTGGCATTTGTATAATCTACTGATACTGATATTACAGAAATGGAAAGAGTAAAATTATCTTGTATCAAAGGTGTC</gDNA_template>
            <first_frame> E  I  S  G  N  Y  I  Y  S  P  H  L  S  K  E  E  *  Q  D  P  F  A  L  V  K  N  L  Q  N  G  S  M  V  S  P  V  L  A  K  A  A  E  R  I  G  N  S  V  R  R  Q  A  I  T  I  T  D  A  A  A  A  R  I  S  N  L  L  Q  Q  R  Q  R  P  F  L  K  L  G  V  K  A  R  G  C  N  G  L  S  Y  T  L  N  Y  A   : D  E  K  G  K  F  D  E  L  I  E  E  K  G  V  K  I  L  I  D  P  K  A  L  M  H  V  I  G  T  K  M  D  F  V  D  D  K  L  R :   S  E  F  I  F  I  N  P  N  S  K  G  Q  C  G  C  G  E  S  F  M  T  T  A  S  K  G  A  E  K  *  D  D  F  N  E  T  *  C  L  *  C  T  H  *  V  G  E  Q  *  N  K  D  L  F  P  E  L  K  C  Y  I  L  Y  M  S  L  Y  C  V  Y  *  M  *  K  I  A  S  L  G  I  C  I  I  Y  *  Y  *  Y  Y  R  N  G  K  S  K  I  I  L  Y  Q  R  C  </first_frame>
            <second_frame>  K  F  Q  V  I  I  F  T  A  P  I  F  Q  K  R  N  N  R  I  H  L  R  *  *  R  T  S  K  T  D  R  W  C  L  R  C  *  Q  R  R  R  R  E  S  E  I  Q  S  G  G  K  Q  *  L  L  Q  T  P  P  L  L  E  L  A  I  S  F  S  N  G  S  V  L  F  L  S  S  A  L  K  L  V  D  A  T  A  Y  P  T  R  S  I  T  P  :  M  R  R  V  N  L  M  S  *  L  K  R  R  E  *  K  Y  L  L  I  L  R  H  *  C  T  *  L  V  P  R  W  I  L  *  M  I  N  *   : G  L  S  S  F  L  L  I  P  T  R  K  G  N  A  V  V  V  S  L  S  *  Q  Q  P  V  K  V  L  K  S  E  M  I  L  M  R  H  D  V  Y  N  V  L  I  R  *  A  N  N  E  I  K  I  Y  S  Q  N  *  N  V  I  S  Y  T  C  L  C  I  V  F  I  R  C  K  K  L  P  V  L  A  F  V  *  S  T  D  T  D  I  T  E  M  E  R  V  K  L  S  C  I  K  G  V </second_frame>
            <third_frame>   N  F  R  *  L  Y  L  Q  P  P  S  F  K  R  G  I  T  G  S  I  C  V  S  E  E  P  P  K  R  I  D  G  V  S  G  A  S  K  G  G  G  E  N  R  K  F  S  P  A  A  S  N  N  Y  Y  R  R  R  R  C  S  N  *  Q  S  P  S  A  T  A  A  S  F  S  *  A  R  R  *  S  S  W  M  Q  R  L  I  L  H  A  Q  L  R  R :   *  E  G  *  I  *  *  V  D  *  R  E  G  S  K  N  T  Y  *  S  *  G  I  D  A  R  D  W  Y  Q  D  G  F  C  R  *  *  I  E  :  V  *  V  H  F  Y  *  S  Q  L  E  R  A  M  R  L  W  *  V  F  H  D  N  S  Q  *  R  C  *  K  V  R  *  F  *  *  D  M  M  F  I  M  Y  S  L  G  R  R  T  M  K  *  R  F  I  P  R  I  K  M  L  Y  L  I  H  V  F  V  L  C  L  L  D  V  K  N  C  Q  S  W  H  L  Y  N  L  L  I  L  I  L  Q  K  W  K  E  *  N  Y  L  V  S  K  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0018D02.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33663" stop="33432"/>
                    <exon start="23236" stop="23119"/>
                    <exon start="22403" stop="22310"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>441</number_coding_nucleotides>
                  <number_encoded_amino_acids>147</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QDPFALVKNLQNGSMVSPVLAKAAERIGNSVRRQAITITDAAAARISNLLQQRQRPFLKLGVKARGCNGLSYTLNYADEKGKFDELIEEKGVKILIDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCGESFMTTASKGAEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="24188" e_stop="23586"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="24188" e_stop="23586" e_length="603"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24188" stop="23594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24038" stop="23586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305692" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATCTGATTTGCTTTTTGTGATATAGTTTGTTTAAGATACCACACTATCCAATGTAATTTAGTTCCTTAAGTGCCAGAGCTATTCAAGAAGGGCAACAATCTAAGCATCTCTTCAAATGAGCAATAGCTAAATGCTATGTTCAATGCAGGTTGGGTGCCCCGGTCATTCAAGTGGTGTTCTGTACAGTCAACAAGGCAGTACTATGTTTGTCTTGTTGCTCATTGACAAATTTAATATGGGTGTCAATTCTTTCAGTTTGTGGTCCTTTCAAGTGGACAAATCTTAAAAAAACAATATAATTGGCAAAGTGACATATTTATTATTATTATTTTTGAATTAGGAATATAGAATTAGAAAATTATAATTTTTTTGTTAAACTTGAATCGGAATCTTAACTGGGTGTTTCACTTAAGAATGGTGTTAACATCCTATGCATTTAGGATTGTCTTTTTGTGTTTACAGTTAACCATTGCATTTATATTTGTCATCTTTTAATCCATTTGCACCACCCTTCACTAACATTCACACTTCAAATATAAAACAAAACACATTCACACTTCAAATATATGCAAAAACAGAACACATTCACACTTAAAATTGC</gDNA_template>
            <first_frame> L  S  D  L  L  F  V  I  *  F  V  *  D  T  T  L  S  N  V  I  *  F  L  K  C  Q  S  Y  S  R  R  A  T  I  *  A  S  L  Q  M  S  N  S  *  M  L  C  S  M  Q  V  G  C  P  G  H  S  S  G  V  L  Y  S  Q  Q  G  S  T  M  F  V  L  L  L  I  D  K  F  N  M  G  V  N  S  F  S  L  W  S  F  Q  V  D  K  S  *  K  N  N  I  I  G  K  V  T  Y  L  L  L  L  F  L  N  *  E  Y  R  I  R  K  L  *  F  F  C  *  T  *  I  G  I  L  T  G  C  F  T  *  E  W  C  *  H  P  M  H  L  G  L  S  F  C  V  Y  S  *  P  L  H  L  Y  L  S  S  F  N  P  F  A  P  P  F  T  N  I  H  T  S  N  I  K  Q  N  T  F  T  L  Q  I  Y  A  K  T  E  H  I  H  T  *  N  C </first_frame>
            <second_frame>  Y  L  I  C  F  L  *  Y  S  L  F  K  I  P  H  Y  P  M  *  F  S  S  L  S  A  R  A  I  Q  E  G  Q  Q  S  K  H  L  F  K  *  A  I  A  K  C  Y  V  Q  C  R  L  G  A  P  V  I  Q  V  V  F  C  T  V  N  K  A  V  L  C  L  S  C  C  S  L  T  N  L  I  W  V  S  I  L  S  V  C  G  P  F  K  W  T  N  L  K  K  T  I  *  L  A  K  *  H  I  Y  Y  Y  Y  F  *  I  R  N  I  E  L  E  N  Y  N  F  F  V  K  L  E  S  E  S  *  L  G  V  S  L  K  N  G  V  N  I  L  C  I  *  D  C  L  F  V  F  T  V  N  H  C  I  Y  I  C  H  L  L  I  H  L  H  H  P  S  L  T  F  T  L  Q  I  *  N  K  T  H  S  H  F  K  Y  M  Q  K  Q  N  T  F  T  L  K  I   </second_frame>
            <third_frame>   I  *  F  A  F  C  D  I  V  C  L  R  Y  H  T  I  Q  C  N  L  V  P  *  V  P  E  L  F  K  K  G  N  N  L  S  I  S  S  N  E  Q  *  L  N  A  M  F  N  A  G  W  V  P  R  S  F  K  W  C  S  V  Q  S  T  R  Q  Y  Y  V  C  L  V  A  H  *  Q  I  *  Y  G  C  Q  F  F  Q  F  V  V  L  S  S  G  Q  I  L  K  K  Q  Y  N  W  Q  S  D  I  F  I  I  I  I  F  E  L  G  I  *  N  *  K  I  I  I  F  L  L  N  L  N  R  N  L  N  W  V  F  H  L  R  M  V  L  T  S  Y  A  F  R  I  V  F  L  C  L  Q  L  T  I  A  F  I  F  V  I  F  *  S  I  C  T  T  L  H  *  H  S  H  F  K  Y  K  T  K  H  I  H  T  S  N  I  C  K  N  R  T  H  S  H  L  K  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLm0018D02.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="27003" e_stop="26901"/>
            <exon e_start="24038" e_stop="23401"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.946" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27003" e_stop="26901" e_length="103"/>
          </exon>
          <intron i_serial="1" don_prob="0.946" acc_prob="0.993">
            <gDNA_intron_boundary i_start="26900" i_stop="24039" i_length="2862"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="24038" e_stop="23401" e_length="638"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27003" stop="26901"/>
              <exon start="24038" stop="23401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24038" stop="23586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305692" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCCCTCCAAAAAAAAAGAAAAATAGAAAAAAAAGCAGAGCATGGAGTTAAATTTTAAAAATTATAGGAGGAAAAAATGGAACAACGACATCATAAAAGAAAA : GTTGGGTGCCCCGGTCATTCAAGTGGTGTTCTGTACAGTCAACAAGGCAGTACTATGTTTGTCTTGTTGCTCATTGACAAATTTAATATGGGTGTCAATTCTTTCAGTTTGTGGTCCTTTCAAGTGGACAAATCTTAAAAAAACAATATAATTGGCAAAGTGACATATTTATTATTATTATTTTTGAATTAGGAATATAGAATTAGAAAATTATAATTTTTTTGTTAAACTTGAATCGGAATCTTAACTGGGTGTTTCACTTAAGAATGGTGTTAACATCCTATGCATTTAGGATTGTCTTTTTGTGTTTACAGTTAACCATTGCATTTATATTTGTCATCTTTTAATCCATTTGCACCACCCTTCACTAACATTCACACTTCAAATATAAAACAAAACACATTCACACTTCAAATATATGCAAAAACAGAACACATTCACACTTAAAATTGCTTATTGCCATGGACAATCTTAGCAGTTTTATACTCTTTTTGCGTTTGACATTGACAATATTATTGCAAATCGTCAGTTACTTAGTTCACTTGTCGCAAGACTCGAACTTCGGACTTTAAGTTGCAAGTTCATCAACTTTTTCCGATTGAACCAAGCCTGAGGGACAATTTTTATTTTTATTTTTG</gDNA_template>
            <first_frame> L  P  P  K  K  K  K  N  R  K  K  S  R  A  W  S  *  I  L  K  I  I  G  G  K  N  G  T  T  T  S  *  K  K   : S  W  V  P  R  S  F  K  W  C  S  V  Q  S  T  R  Q  Y  Y  V  C  L  V  A  H  *  Q  I  *  Y  G  C  Q  F  F  Q  F  V  V  L  S  S  G  Q  I  L  K  K  Q  Y  N  W  Q  S  D  I  F  I  I  I  I  F  E  L  G  I  *  N  *  K  I  I  I  F  L  L  N  L  N  R  N  L  N  W  V  F  H  L  R  M  V  L  T  S  Y  A  F  R  I  V  F  L  C  L  Q  L  T  I  A  F  I  F  V  I  F  *  S  I  C  T  T  L  H  *  H  S  H  F  K  Y  K  T  K  H  I  H  T  S  N  I  C  K  N  R  T  H  S  H  L  K  L  L  I  A  M  D  N  L  S  S  F  I  L  F  L  R  L  T  L  T  I  L  L  Q  I  V  S  Y  L  V  H  L  S  Q  D  S  N  F  G  L  *  V  A  S  S  S  T  F  S  D  *  T  K  P  E  G  Q  F  L  F  L  F  L </first_frame>
            <second_frame>  S  L  Q  K  K  R  K  I  E  K  K  A  E  H  G  V  K  F  *  K  L  *  E  E  K  M  E  Q  R  H  H  K  R  K  :  V  G  C  P  G  H  S  S  G  V  L  Y  S  Q  Q  G  S  T  M  F  V  L  L  L  I  D  K  F  N  M  G  V  N  S  F  S  L  W  S  F  Q  V  D  K  S  *  K  N  N  I  I  G  K  V  T  Y  L  L  L  L  F  L  N  *  E  Y  R  I  R  K  L  *  F  F  C  *  T  *  I  G  I  L  T  G  C  F  T  *  E  W  C  *  H  P  M  H  L  G  L  S  F  C  V  Y  S  *  P  L  H  L  Y  L  S  S  F  N  P  F  A  P  P  F  T  N  I  H  T  S  N  I  K  Q  N  T  F  T  L  Q  I  Y  A  K  T  E  H  I  H  T  *  N  C  L  L  P  W  T  I  L  A  V  L  Y  S  F  C  V  *  H  *  Q  Y  Y  C  K  S  S  V  T  *  F  T  C  R  K  T  R  T  S  D  F  K  L  Q  V  H  Q  L  F  P  I  E  P  S  L  R  D  N  F  Y  F  Y  F   </second_frame>
            <third_frame>   P  S  K  K  K  E  K  *  K  K  K  Q  S  M  E  L  N  F  K  N  Y  R  R  K  K  W  N  N  D  I  I  K  E  K :   L  G  A  P  V  I  Q  V  V  F  C  T  V  N  K  A  V  L  C  L  S  C  C  S  L  T  N  L  I  W  V  S  I  L  S  V  C  G  P  F  K  W  T  N  L  K  K  T  I  *  L  A  K  *  H  I  Y  Y  Y  Y  F  *  I  R  N  I  E  L  E  N  Y  N  F  F  V  K  L  E  S  E  S  *  L  G  V  S  L  K  N  G  V  N  I  L  C  I  *  D  C  L  F  V  F  T  V  N  H  C  I  Y  I  C  H  L  L  I  H  L  H  H  P  S  L  T  F  T  L  Q  I  *  N  K  T  H  S  H  F  K  Y  M  Q  K  Q  N  T  F  T  L  K  I  A  Y  C  H  G  Q  S  *  Q  F  Y  T  L  F  A  F  D  I  D  N  I  I  A  N  R  Q  L  L  S  S  L  V  A  R  L  E  L  R  T  L  S  C  K  F  I  N  F  F  R  L  N  Q  A  *  G  T  I  F  I  F  I  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0018D02.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26977" stop="26901"/>
                    <exon start="24038" stop="23888"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKKQSMELNFKNYRRKKWNNDIIKEKLGAPVIQVVFCTVNKAVLCLSCCSLTNLIWVSILSVCGPFKWTNLKKTI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0018D02.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23667" stop="23467"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HSHFKYKTKHIHTSNICKNRTHSHLKLLIAMDNLSSFILFLRLTLTILLQIVSYLVHLSQDSNFGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="28691" e_stop="27512"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="28691" e_stop="27512" e_length="1180"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28691" stop="27923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28246" stop="27512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213960" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTTATCCACCGGAGTGACTTGCCTATGTAGAGGGGCCGGAAATCTTGGGAACTAAGTCACCTCTCAATCGTCGAAATTCCTTCCAAATCTTAGATCCCAAAAATTATCTCCACCATAGGCCCACCTAATTTCTTGGACCTTCAATTCTCCTTGACATGACATTCTAAACAAATTCTGAAGATTATCTTTCAGTGAGTTATCTCTACCCAACCTACGTCCCGGGAAATTCTCTCCTTCCATTCCAACCTTGAATGAGATACTTTTGCTAAAATCATCCCATCCCTTCATTATGTTCCTCCACAAACCGCACCCAAAAGGCATAATGACATCTCTAGTTCTCCTAAATCTGCTTCCCACTAGACAAATAGGTCTGTAGTCCTCCATGCACCATGCTCCTCCCTCTTAGGGGTAATGACAACTAATGAAGCATTCAAACTCTTTTCAAATACACCACTTCCCTGGAAGTCAACAACTGTATCTATTAAATCAGATCTAACCATTTTCCTGCAGTGCTCAAAAAAATCCGTAGAGGCATCAGGTGCCAGAGCTTTGTTACTAGCACAACCCTCTACCGCCCTCTTCAACTCTTCCTCCTGAATTTCCCTCTCTAGCCATTCACTCTCCTCCCTGCCAATATGACGAACCCTAAACCCCCCAATTTAGGCCCCCAATCTGCTACCTCTAACAAACGCTTGTAAAAATCTACAATTGCCTTTTCTACTTCCTCCTTTTCCACATGCATCACCCATTTACCTTTTCCGACTATATAAAAGTCCTTCTCCTATTAGCAGTTACTACCCTATGGAAATGTTTTTTGTTGGAGTCCCCCTCTACAACCATTATGACCCTCAAGTTCTGTGTCAAACCAATCTCTTGGGCCAAAGCCAACTCATCTAGCTCCCTTTTCAACCCCTCTAAAATTGTTCTTTCCTCAATTATTACAAGACTAATGACTTAATTCATGTGTAACTTCGTTCAAGGCTTCAAGCTTCAAATTTGCGATGATCATCAAATGGAGAATATTGCCATCTGGTTTTTTGTTTTAGAGGAGGATAAAAAAGTTGGCAAATGGGCTATTCTAGTGGTATGATGTAAGCAACTTTGAAGAACTTGAATGATATTTTATCAGGTAACACCTCTGCCAATTCCTTCTCAACGAAAAAGCACTAAAGCAATTAA</gDNA_template>
            <first_frame> G  Y  P  P  E  *  L  A  Y  V  E  G  P  E  I  L  G  T  K  S  P  L  N  R  R  N  S  F  Q  I  L  D  P  K  N  Y  L  H  H  R  P  T  *  F  L  G  P  S  I  L  L  D  M  T  F  *  T  N  S  E  D  Y  L  S  V  S  Y  L  Y  P  T  Y  V  P  G  N  S  L  L  P  F  Q  P  *  M  R  Y  F  C  *  N  H  P  I  P  S  L  C  S  S  T  N  R  T  Q  K  A  *  *  H  L  *  F  S  *  I  C  F  P  L  D  K  *  V  C  S  P  P  C  T  M  L  L  P  L  R  G  N  D  N  *  *  S  I  Q  T  L  F  K  Y  T  T  S  L  E  V  N  N  C  I  Y  *  I  R  S  N  H  F  P  A  V  L  K  K  I  R  R  G  I  R  C  Q  S  F  V  T  S  T  T  L  Y  R  P  L  Q  L  F  L  L  N  F  P  L  *  P  F  T  L  L  P  A  N  M  T  N  P  K  P  P  N  L  G  P  Q  S  A  T  S  N  K  R  L  *  K  S  T  I  A  F  S  T  S  S  F  S  T  C  I  T  H  L  P  F  P  T  I  *  K  S  F  S  Y  *  Q  L  L  P  Y  G  N  V  F  C  W  S  P  P  L  Q  P  L  *  P  S  S  S  V  S  N  Q  S  L  G  P  K  P  T  H  L  A  P  F  S  T  P  L  K  L  F  F  P  Q  L  L  Q  D  *  *  L  N  S  C  V  T  S  F  K  A  S  S  F  K  F  A  M  I  I  K  W  R  I  L  P  S  G  F  L  F  *  R  R  I  K  K  L  A  N  G  L  F  *  W  Y  D  V  S  N  F  E  E  L  E  *  Y  F  I  R  *  H  L  C  Q  F  L  L  N  E  K  A  L  K  Q  L  </first_frame>
            <second_frame>  V  I  H  R  S  D  L  P  M  *  R  G  R  K  S  W  E  L  S  H  L  S  I  V  E  I  P  S  K  S  *  I  P  K  I  I  S  T  I  G  P  P  N  F  L  D  L  Q  F  S  L  T  *  H  S  K  Q  I  L  K  I  I  F  Q  *  V  I  S  T  Q  P  T  S  R  E  I  L  S  F  H  S  N  L  E  *  D  T  F  A  K  I  I  P  S  L  H  Y  V  P  P  Q  T  A  P  K  R  H  N  D  I  S  S  S  P  K  S  A  S  H  *  T  N  R  S  V  V  L  H  A  P  C  S  S  L  L  G  V  M  T  T  N  E  A  F  K  L  F  S  N  T  P  L  P  W  K  S  T  T  V  S  I  K  S  D  L  T  I  F  L  Q  C  S  K  K  S  V  E  A  S  G  A  R  A  L  L  L  A  Q  P  S  T  A  L  F  N  S  S  S  *  I  S  L  S  S  H  S  L  S  S  L  P  I  *  R  T  L  N  P  P  I  *  A  P  N  L  L  P  L  T  N  A  C  K  N  L  Q  L  P  F  L  L  P  P  F  P  H  A  S  P  I  Y  L  F  R  L  Y  K  S  P  S  P  I  S  S  Y  Y  P  M  E  M  F  F  V  G  V  P  L  Y  N  H  Y  D  P  Q  V  L  C  Q  T  N  L  L  G  Q  S  Q  L  I  *  L  P  F  Q  P  L  *  N  C  S  F  L  N  Y  Y  K  T  N  D  L  I  H  V  *  L  R  S  R  L  Q  A  S  N  L  R  *  S  S  N  G  E  Y  C  H  L  V  F  C  F  R  G  G  *  K  S  W  Q  M  G  Y  S  S  G  M  M  *  A  T  L  K  N  L  N  D  I  L  S  G  N  T  S  A  N  S  F  S  T  K  K  H  *  S  N  * </second_frame>
            <third_frame>   L  S  T  G  V  T  C  L  C  R  G  A  G  N  L  G  N  *  V  T  S  Q  S  S  K  F  L  P  N  L  R  S  Q  K  L  S  P  P  *  A  H  L  I  S  W  T  F  N  S  P  *  H  D  I  L  N  K  F  *  R  L  S  F  S  E  L  S  L  P  N  L  R  P  G  K  F  S  P  S  I  P  T  L  N  E  I  L  L  L  K  S  S  H  P  F  I  M  F  L  H  K  P  H  P  K  G  I  M  T  S  L  V  L  L  N  L  L  P  T  R  Q  I  G  L  *  S  S  M  H  H  A  P  P  S  *  G  *  *  Q  L  M  K  H  S  N  S  F  Q  I  H  H  F  P  G  S  Q  Q  L  Y  L  L  N  Q  I  *  P  F  S  C  S  A  Q  K  N  P  *  R  H  Q  V  P  E  L  C  Y  *  H  N  P  L  P  P  S  S  T  L  P  P  E  F  P  S  L  A  I  H  S  P  P  C  Q  Y  D  E  P  *  T  P  Q  F  R  P  P  I  C  Y  L  *  Q  T  L  V  K  I  Y  N  C  L  F  Y  F  L  L  F  H  M  H  H  P  F  T  F  S  D  Y  I  K  V  L  L  L  L  A  V  T  T  L  W  K  C  F  L  L  E  S  P  S  T  T  I  M  T  L  K  F  C  V  K  P  I  S  W  A  K  A  N  S  S  S  S  L  F  N  P  S  K  I  V  L  S  S  I  I  T  R  L  M  T  *  F  M  C  N  F  V  Q  G  F  K  L  Q  I  C  D  D  H  Q  M  E  N  I  A  I  W  F  F  V  L  E  E  D  K  K  V  G  K  W  A  I  L  V  V  *  C  K  Q  L  *  R  T  *  M  I  F  Y  Q  V  T  P  L  P  I  P  S  Q  R  K  S  T  K  A  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0018D02.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28005" stop="27733"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTLVKIYNCLFYFLLFHMHHPFTFSDYIKVLLLLAVTTLWKCFLLESPSTTIMTLKFCVKPISWAKANSSSSLFNPSKIVLSSIITRLMT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0018D02.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28330" stop="28094"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TNRSVVLHAPCSSLLGVMTTNEAFKLFSNTPLPWKSTTVSIKSDLTIFLQCSKKSVEASGARALLLAQPSTALFNSSS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0018D02.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="4" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28027" stop="27794"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>APNLLPLTNACKNLQLPFLLPPFPHASPIYLFRLYKSPSPISSYYPMEMFFVGVPLYNHYDPQVLCQTNLLGQSQLI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0018D02.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="4" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28512" stop="28315"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLSFSELSLPNLRPGKFSPSIPTLNEILLLKSSHPFIMFLHKPHPKGIMTSLVLLNLLPTRQIGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="36779" PGL_stop="56148"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36807" e_stop="36899"/>
            <exon e_start="38527" e_stop="39266"/>
            <exon e_start="41751" e_stop="42050"/>
            <exon e_start="46869" e_stop="46959"/>
            <exon e_start="52961" e_stop="53652"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.094" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="0.992"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.959" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36807" e_stop="36899" e_length="93"/>
          </exon>
          <intron i_serial="1" don_prob="0.094" acc_prob="0.998">
            <gDNA_intron_boundary i_start="36900" i_stop="38526" i_length="1627"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="38527" e_stop="39266" e_length="740"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="39267" i_stop="41750" i_length="2484"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41751" e_stop="42050" e_length="300"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="42051" i_stop="46868" i_length="4818"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="46869" e_stop="46959" e_length="91"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.959">
            <gDNA_intron_boundary i_start="46960" i_stop="52960" i_length="6001"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="52961" e_stop="53652" e_length="692"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36807" stop="36899"/>
              <exon start="38527" stop="39126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36879" stop="36899"/>
              <exon start="38527" stop="39063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39126" stop="39266"/>
              <exon start="41751" stop="42050"/>
              <exon start="46869" stop="46959"/>
              <exon start="52961" stop="53076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39248" stop="39266"/>
              <exon start="41751" stop="42050"/>
              <exon start="46869" stop="46959"/>
              <exon start="52961" stop="53014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53028" stop="53652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53047" stop="53641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264051" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGTAGCCAAAACTCTGTCTTTCTCTATATTTCTTCAAAATTTCAAAGGATTTGTGCAATTCTCTTTTTGGGTTTTTGTCTCTTCAATTTCAG : GTGCTGAAAGAAAAAACTGGACTGGAACTTCAGATATTATCTAGGAGGTCGATTATATTTTTTCTGGATTAATCAGAATAGTTTGAGCTTGAGTTTGGGAATATTCTGTTATGGCTACTTGTACGTCAGCTGTATTTATGCCTCCTGATACGCGGCGGTCACGAGGGGTCTTGACTGTTCTTGGTGGTAGAGTTTGCCCCTTGAAAATTCAAGATGAGAAGATTGGATACTTGGGCGTTAACCAAAAGGGTACCTCAAGTTTGCCTCAATTCAAATGTTCAGCCAATTCCCAGAGTGTCAATCAGTATCAAAACAAAGACCCCTTTCTAAATTTACATCCCGAAATTTCTATGCTCAGAGGCGAAGGTAACAATACAATGACTACCTCTAGACAAGAAAGCTCTAGTGGAAATGTCAGTGAGAGTTTGATGGATTCATCAAGCTCGAACAATTTTAATGAGGCCAAAATCAAGGTGGTTGGTGTAGGAGGTGGTGGATCAAATGCAGTTAATCGCATGATTGAGAGCTCTATGAAGGGTGTAGAGTTTTGGATTGTGAACACGGATATCCAAGCAATGAGGATGTCACCTGTAAATCCTGAGTATAGACTGCCAATAGGTCAAGAACTCACAAGGGGACTTGGTGCAGGCGGTAATCCAGATATAGGGATGAATGCTGCCAATGAGAGCAAGCAGGCCATTGAGGAAGCAGTTTACGGCTCAGACATGGTTTTTGTGACT : GCTGGAATGGGTGGAGGAACAGGGACTGGTGCGGCTCCTATAATTGCAGGAACTGCCAAATCAATGGGTATCTTAACTGTTGGTATCGTTACAACCCCCTTTTCTTTTGAGGGACGAAGAAGAGCAGTTCAAGCCCAAGAAGGAATTGCAGCTTTGAGAGAAAATGTTGATACTCTGATTGTCATTCCAAATGACAAATTATTGACAGCTGTTTCTCCATCAACCCCAGTAACTGAAGCTTTTAACCTGGCTGATGATATTCTTCGGCAAGGAGTTCGTGGTATTTCTGATATAATTACG : ATTCCTGGGCTAGTAAATGTGGATTTTGCTGATGTGCGTGCTATTATGGCAAATGCTGGGTCTTCTTTAATGGGAATAGGAACTGCTACAG : GAAAGACCAGAGCGAGAGATGCAGCATTGAACGCCATTCAATCTCCTCTGCTGGATATCGGTATAGAGAGGGCTACTGGAATTGTGTGGAATATAACTGGTGGTAGTGATCTAACATTATTTGAGGTACCCGACTATTTTTTCTCTTGCTCTCTCTCTCTCTTCCGATACACTTACTAATCATCCTTAGTATGCACCTTTTGTTGACTGAAAAAGGCAGAAATGTATTCCATAACGTAGAAAAGATTTTGGCAGTAGAAGCCTTTTACTTTTTTCAATGTAGAGATTTTTCTTATTGAAGATGGCATATATGAATGTGTGAATTTCCTTGTATGATCGTCTCTTACAAAGAAAAATAAGAGAGAAACTTTATCTAATGGTGCATGAGGGTTGTGAAAAGCTATGTTGCTTAGACTCTTCAAAAATGTCGACGGGTGCGTGTCAGATCCTCCAAAAATAGTGTATTTTTGAAGGATCTGACACGGGTGCGGCAACATTTTTGGAGAGTCCAAGCAACTTAGGTGAAAAGATCAAACAACCTATGCTTCTGGTTCATCCTGTTTCCTTATCTGCTGTTTCTCAGCATTTATGTATGCCAATGTTGTCATTTTTAAAGTGCGCTTAAGCCTTGAAGCGTGGTACAAAACATGTTGAGCACTTTGCCTCGCTTTATGCACGCTTCAGTGTCGTCAT</gDNA_template>
            <first_frame> *  *  P  K  L  C  L  S  L  Y  F  F  K  I  S  K  D  L  C  N  S  L  F  G  F  L  S  L  Q  F  Q  :  V  L  K  E  K  T  G  L  E  L  Q  I  L  S  R  R  S  I  I  F  F  L  D  *  S  E  *  F  E  L  E  F  G  N  I  L  L  W  L  L  V  R  Q  L  Y  L  C  L  L  I  R  G  G  H  E  G  S  *  L  F  L  V  V  E  F  A  P  *  K  F  K  M  R  R  L  D  T  W  A  L  T  K  R  V  P  Q  V  C  L  N  S  N  V  Q  P  I  P  R  V  S  I  S  I  K  T  K  T  P  F  *  I  Y  I  P  K  F  L  C  S  E  A  K  V  T  I  Q  *  L  P  L  D  K  K  A  L  V  E  M  S  V  R  V  *  W  I  H  Q  A  R  T  I  L  M  R  P  K  S  R  W  L  V  *  E  V  V  D  Q  M  Q  L  I  A  *  L  R  A  L  *  R  V  *  S  F  G  L  *  T  R  I  S  K  Q  *  G  C  H  L  *  I  L  S  I  D  C  Q  *  V  K  N  S  Q  G  D  L  V  Q  A  V  I  Q  I  *  G  *  M  L  P  M  R  A  S  R  P  L  R  K  Q  F  T  A  Q  T  W  F  L  *  L :   L  E  W  V  E  E  Q  G  L  V  R  L  L  *  L  Q  E  L  P  N  Q  W  V  S  *  L  L  V  S  L  Q  P  P  F  L  L  R  D  E  E  E  Q  F  K  P  K  K  E  L  Q  L  *  E  K  M  L  I  L  *  L  S  F  Q  M  T  N  Y  *  Q  L  F  L  H  Q  P  Q  *  L  K  L  L  T  W  L  M  I  F  F  G  K  E  F  V  V  F  L  I  *  L  R :   F  L  G  *  *  M  W  I  L  L  M  C  V  L  L  W  Q  M  L  G  L  L  *  W  E  *  E  L  L  Q  :  E  R  P  E  R  E  M  Q  H  *  T  P  F  N  L  L  C  W  I  S  V  *  R  G  L  L  E  L  C  G  I  *  L  V  V  V  I  *  H  Y  L  R  Y  P  T  I  F  S  L  A  L  S  L  S  S  D  T  L  T  N  H  P  *  Y  A  P  F  V  D  *  K  R  Q  K  C  I  P  *  R  R  K  D  F  G  S  R  S  L  L  L  F  S  M  *  R  F  F  L  L  K  M  A  Y  M  N  V  *  I  S  L  Y  D  R  L  L  Q  R  K  I  R  E  K  L  Y  L  M  V  H  E  G  C  E  K  L  C  C  L  D  S  S  K  M  S  T  G  A  C  Q  I  L  Q  K  *  C  I  F  E  G  S  D  T  G  A  A  T  F  L  E  S  P  S  N  L  G  E  K  I  K  Q  P  M  L  L  V  H  P  V  S  L  S  A  V  S  Q  H  L  C  M  P  M  L  S  F  L  K  C  A  *  A  L  K  R  G  T  K  H  V  E  H  F  A  S  L  Y  A  R  F  S  V  V   </first_frame>
            <second_frame>  S  S  Q  N  S  V  F  L  Y  I  S  S  K  F  Q  R  I  C  A  I  L  F  L  G  F  C  L  F  N  F  R :   C  *  K  K  K  L  D  W  N  F  R  Y  Y  L  G  G  R  L  Y  F  F  W  I  N  Q  N  S  L  S  L  S  L  G  I  F  C  Y  G  Y  L  Y  V  S  C  I  Y  A  S  *  Y  A  A  V  T  R  G  L  D  C  S  W  W  *  S  L  P  L  E  N  S  R  *  E  D  W  I  L  G  R  *  P  K  G  Y  L  K  F  A  S  I  Q  M  F  S  Q  F  P  E  C  Q  S  V  S  K  Q  R  P  L  S  K  F  T  S  R  N  F  Y  A  Q  R  R  R  *  Q  Y  N  D  Y  L  *  T  R  K  L  *  W  K  C  Q  *  E  F  D  G  F  I  K  L  E  Q  F  *  *  G  Q  N  Q  G  G  W  C  R  R  W  W  I  K  C  S  *  S  H  D  *  E  L  Y  E  G  C  R  V  L  D  C  E  H  G  Y  P  S  N  E  D  V  T  C  K  S  *  V  *  T  A  N  R  S  R  T  H  K  G  T  W  C  R  R  *  S  R  Y  R  D  E  C  C  Q  *  E  Q  A  G  H  *  G  S  S  L  R  L  R  H  G  F  C  D   : C  W  N  G  W  R  N  R  D  W  C  G  S  Y  N  C  R  N  C  Q  I  N  G  Y  L  N  C  W  Y  R  Y  N  P  L  F  F  *  G  T  K  K  S  S  S  S  P  R  R  N  C  S  F  E  R  K  C  *  Y  S  D  C  H  S  K  *  Q  I  I  D  S  C  F  S  I  N  P  S  N  *  S  F  *  P  G  *  *  Y  S  S  A  R  S  S  W  Y  F  *  Y  N  Y   : D  S  W  A  S  K  C  G  F  C  *  C  A  C  Y  Y  G  K  C  W  V  F  F  N  G  N  R  N  C  Y  R :   K  D  Q  S  E  R  C  S  I  E  R  H  S  I  S  S  A  G  Y  R  Y  R  E  G  Y  W  N  C  V  E  Y  N  W  W  *  *  S  N  I  I  *  G  T  R  L  F  F  L  L  L  S  L  S  L  P  I  H  L  L  I  I  L  S  M  H  L  L  L  T  E  K  G  R  N  V  F  H  N  V  E  K  I  L  A  V  E  A  F  Y  F  F  Q  C  R  D  F  S  Y  *  R  W  H  I  *  M  C  E  F  P  C  M  I  V  S  Y  K  E  K  *  E  R  N  F  I  *  W  C  M  R  V  V  K  S  Y  V  A  *  T  L  Q  K  C  R  R  V  R  V  R  S  S  K  N  S  V  F  L  K  D  L  T  R  V  R  Q  H  F  W  R  V  Q  A  T  *  V  K  R  S  N  N  L  C  F  W  F  I  L  F  P  Y  L  L  F  L  S  I  Y  V  C  Q  C  C  H  F  *  S  A  L  K  P  *  S  V  V  Q  N  M  L  S  T  L  P  R  F  M  H  A  S  V  S  S  </second_frame>
            <third_frame>   V  A  K  T  L  S  F  S  I  F  L  Q  N  F  K  G  F  V  Q  F  S  F  W  V  F  V  S  S  I  S   : G  A  E  R  K  N  W  T  G  T  S  D  I  I  *  E  V  D  Y  I  F  S  G  L  I  R  I  V  *  A  *  V  W  E  Y  S  V  M  A  T  C  T  S  A  V  F  M  P  P  D  T  R  R  S  R  G  V  L  T  V  L  G  G  R  V  C  P  L  K  I  Q  D  E  K  I  G  Y  L  G  V  N  Q  K  G  T  S  S  L  P  Q  F  K  C  S  A  N  S  Q  S  V  N  Q  Y  Q  N  K  D  P  F  L  N  L  H  P  E  I  S  M  L  R  G  E  G  N  N  T  M  T  T  S  R  Q  E  S  S  S  G  N  V  S  E  S  L  M  D  S  S  S  S  N  N  F  N  E  A  K  I  K  V  V  G  V  G  G  G  G  S  N  A  V  N  R  M  I  E  S  S  M  K  G  V  E  F  W  I  V  N  T  D  I  Q  A  M  R  M  S  P  V  N  P  E  Y  R  L  P  I  G  Q  E  L  T  R  G  L  G  A  G  G  N  P  D  I  G  M  N  A  A  N  E  S  K  Q  A  I  E  E  A  V  Y  G  S  D  M  V  F  V  T  :  A  G  M  G  G  G  T  G  T  G  A  A  P  I  I  A  G  T  A  K  S  M  G  I  L  T  V  G  I  V  T  T  P  F  S  F  E  G  R  R  R  A  V  Q  A  Q  E  G  I  A  A  L  R  E  N  V  D  T  L  I  V  I  P  N  D  K  L  L  T  A  V  S  P  S  T  P  V  T  E  A  F  N  L  A  D  D  I  L  R  Q  G  V  R  G  I  S  D  I  I  T  :  I  P  G  L  V  N  V  D  F  A  D  V  R  A  I  M  A  N  A  G  S  S  L  M  G  I  G  T  A  T   : G  K  T  R  A  R  D  A  A  L  N  A  I  Q  S  P  L  L  D  I  G  I  E  R  A  T  G  I  V  W  N  I  T  G  G  S  D  L  T  L  F  E  V  P  D  Y  F  F  S  C  S  L  S  L  F  R  Y  T  Y  *  S  S  L  V  C  T  F  C  *  L  K  K  A  E  M  Y  S  I  T  *  K  R  F  W  Q  *  K  P  F  T  F  F  N  V  E  I  F  L  I  E  D  G  I  Y  E  C  V  N  F  L  V  *  S  S  L  T  K  K  N  K  R  E  T  L  S  N  G  A  *  G  L  *  K  A  M  L  L  R  L  F  K  N  V  D  G  C  V  S  D  P  P  K  I  V  Y  F  *  R  I  *  H  G  C  G  N  I  F  G  E  S  K  Q  L  R  *  K  D  Q  T  T  Y  A  S  G  S  S  C  F  L  I  C  C  F  S  A  F  M  Y  A  N  V  V  I  F  K  V  R  L  S  L  E  A  W  Y  K  T  C  *  A  L  C  L  A  L  C  T  L  Q  C  R  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0018D02.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38619" stop="39266"/>
                    <exon start="41751" stop="42050"/>
                    <exon start="46869" stop="46959"/>
                    <exon start="52961" stop="53139"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1215</number_coding_nucleotides>
                  <number_encoded_amino_acids>405</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VWEYSVMATCTSAVFMPPDTRRSRGVLTVLGGRVCPLKIQDEKIGYLGVNQKGTSSLPQFKCSANSQSVNQYQNKDPFLNLHPEISMLRGEGNNTMTTSRQESSSGNVSESLMDSSSSNNFNEAKIKVVGVGGGGSNAVNRMIESSMKGVEFWIVNTDIQAMRMSPVNPEYRLPIGQELTRGLGAGGNPDIGMNAANESKQAIEEAVYGSDMVFVTAGMGGGTGTGAAPIIAGTAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIAALRENVDTLIVIPNDKLLTAVSPSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSSLMGIGTATGKTRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFEVPDYFFSCSLSLFRYTY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="36807" e_stop="36899"/>
            <exon e_start="38527" e_stop="39266"/>
            <exon e_start="41751" e_stop="42050"/>
            <exon e_start="46869" e_stop="46959"/>
            <exon e_start="52961" e_stop="53085"/>
            <exon e_start="54809" e_stop="54901"/>
            <exon e_start="55475" e_stop="55540"/>
            <exon e_start="55645" e_stop="55776"/>
            <exon e_start="55872" e_stop="56115"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.094" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="0.992"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.995" e_score="0.862"/>
          <exon-intron don_prob="0.999" acc_prob="0.929" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36807" e_stop="36899" e_length="93"/>
          </exon>
          <intron i_serial="1" don_prob="0.094" acc_prob="0.998">
            <gDNA_intron_boundary i_start="36900" i_stop="38526" i_length="1627"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="38527" e_stop="39266" e_length="740"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="39267" i_stop="41750" i_length="2484"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41751" e_stop="42050" e_length="300"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="42051" i_stop="46868" i_length="4818"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="46869" e_stop="46959" e_length="91"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.959">
            <gDNA_intron_boundary i_start="46960" i_stop="52960" i_length="6001"/>
          </intron>
          <exon e_serial="5" e_score="0.862">
            <gDNA_exon_boundary e_start="52961" e_stop="53085" e_length="125"/>
          </exon>
          <intron i_serial="5" don_prob="0.978" acc_prob="0.995">
            <gDNA_intron_boundary i_start="53086" i_stop="54808" i_length="1723"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="54809" e_stop="54901" e_length="93"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.929">
            <gDNA_intron_boundary i_start="54902" i_stop="55474" i_length="573"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="55475" e_stop="55540" e_length="66"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="55541" i_stop="55644" i_length="104"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="55645" e_stop="55776" e_length="132"/>
          </exon>
          <intron i_serial="8" don_prob="0.962" acc_prob="0.000">
            <gDNA_intron_boundary i_start="55777" i_stop="55871" i_length="95"/>
          </intron>
          <exon e_serial="9" e_score="0.963">
            <gDNA_exon_boundary e_start="55872" e_stop="56115" e_length="244"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36807" stop="36899"/>
              <exon start="38527" stop="39126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36879" stop="36899"/>
              <exon start="38527" stop="39063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39126" stop="39266"/>
              <exon start="41751" stop="42050"/>
              <exon start="46869" stop="46959"/>
              <exon start="52961" stop="53076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39248" stop="39266"/>
              <exon start="41751" stop="42050"/>
              <exon start="46869" stop="46959"/>
              <exon start="52961" stop="53014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53006" stop="53085"/>
              <exon start="54809" stop="54901"/>
              <exon start="55475" stop="55540"/>
              <exon start="55645" stop="55776"/>
              <exon start="55872" stop="56115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732350" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGTAGCCAAAACTCTGTCTTTCTCTATATTTCTTCAAAATTTCAAAGGATTTGTGCAATTCTCTTTTTGGGTTTTTGTCTCTTCAATTTCAG : GTGCTGAAAGAAAAAACTGGACTGGAACTTCAGATATTATCTAGGAGGTCGATTATATTTTTTCTGGATTAATCAGAATAGTTTGAGCTTGAGTTTGGGAATATTCTGTTATGGCTACTTGTACGTCAGCTGTATTTATGCCTCCTGATACGCGGCGGTCACGAGGGGTCTTGACTGTTCTTGGTGGTAGAGTTTGCCCCTTGAAAATTCAAGATGAGAAGATTGGATACTTGGGCGTTAACCAAAAGGGTACCTCAAGTTTGCCTCAATTCAAATGTTCAGCCAATTCCCAGAGTGTCAATCAGTATCAAAACAAAGACCCCTTTCTAAATTTACATCCCGAAATTTCTATGCTCAGAGGCGAAGGTAACAATACAATGACTACCTCTAGACAAGAAAGCTCTAGTGGAAATGTCAGTGAGAGTTTGATGGATTCATCAAGCTCGAACAATTTTAATGAGGCCAAAATCAAGGTGGTTGGTGTAGGAGGTGGTGGATCAAATGCAGTTAATCGCATGATTGAGAGCTCTATGAAGGGTGTAGAGTTTTGGATTGTGAACACGGATATCCAAGCAATGAGGATGTCACCTGTAAATCCTGAGTATAGACTGCCAATAGGTCAAGAACTCACAAGGGGACTTGGTGCAGGCGGTAATCCAGATATAGGGATGAATGCTGCCAATGAGAGCAAGCAGGCCATTGAGGAAGCAGTTTACGGCTCAGACATGGTTTTTGTGACT : GCTGGAATGGGTGGAGGAACAGGGACTGGTGCGGCTCCTATAATTGCAGGAACTGCCAAATCAATGGGTATCTTAACTGTTGGTATCGTTACAACCCCCTTTTCTTTTGAGGGACGAAGAAGAGCAGTTCAAGCCCAAGAAGGAATTGCAGCTTTGAGAGAAAATGTTGATACTCTGATTGTCATTCCAAATGACAAATTATTGACAGCTGTTTCTCCATCAACCCCAGTAACTGAAGCTTTTAACCTGGCTGATGATATTCTTCGGCAAGGAGTTCGTGGTATTTCTGATATAATTACG : ATTCCTGGGCTAGTAAATGTGGATTTTGCTGATGTGCGTGCTATTATGGCAAATGCTGGGTCTTCTTTAATGGGAATAGGAACTGCTACAG : GAAAGACCAGAGCGAGAGATGCAGCATTGAACGCCATTCAATCTCCTCTGCTGGATATCGGTATAGAGAGGGCTACTGGAATTGTGTGGAATATAACTGGTGGTAGTGATCTAACATTATTTGAG : GTAAATGCTGCAGCAGAGGTTATATATGACCTTGTGGATCCAAGTGCTAACCTCATTTTTGGGGCGGTGATAGACCCATCAATAAGTGGACAG : GTCAGCATAACGCTGATTGCCACTGGTTTCAAGCGCCAAGAAGAAAGTGATATGAGGCCCCTCCAG : GGAAACCAACTAGCACAGGGAGATGCTTCACTTGGAACTAACAGACGACCTGCGTCCTTTCTGGAAGGTGGTTCAGTGGAAATTCCTGAGTTCCTCAGGAAAAAAGGGCGATTGCGCTATCCAAGAGCTTAA : TACAGGATCTTGGTTATGCATCGACTATCAAGTTTATCTCATGGAAAAACCATTGTCCATCTCGTTTTTCTTTATAATAATGTAGAATTGCCTATACATGTTAGTTTGCTAGTGAGTGTAATAAAGCTGGAGATACTATCAAAGGTAGACAATTAGGATCACAATCAGTCTGGTTTCACCTATGATCTGTAAAGTGTTGCTGTAAAGTTGATATCCATTGACGAACTTGTGCACATATATGTGA</gDNA_template>
            <first_frame> *  *  P  K  L  C  L  S  L  Y  F  F  K  I  S  K  D  L  C  N  S  L  F  G  F  L  S  L  Q  F  Q  :  V  L  K  E  K  T  G  L  E  L  Q  I  L  S  R  R  S  I  I  F  F  L  D  *  S  E  *  F  E  L  E  F  G  N  I  L  L  W  L  L  V  R  Q  L  Y  L  C  L  L  I  R  G  G  H  E  G  S  *  L  F  L  V  V  E  F  A  P  *  K  F  K  M  R  R  L  D  T  W  A  L  T  K  R  V  P  Q  V  C  L  N  S  N  V  Q  P  I  P  R  V  S  I  S  I  K  T  K  T  P  F  *  I  Y  I  P  K  F  L  C  S  E  A  K  V  T  I  Q  *  L  P  L  D  K  K  A  L  V  E  M  S  V  R  V  *  W  I  H  Q  A  R  T  I  L  M  R  P  K  S  R  W  L  V  *  E  V  V  D  Q  M  Q  L  I  A  *  L  R  A  L  *  R  V  *  S  F  G  L  *  T  R  I  S  K  Q  *  G  C  H  L  *  I  L  S  I  D  C  Q  *  V  K  N  S  Q  G  D  L  V  Q  A  V  I  Q  I  *  G  *  M  L  P  M  R  A  S  R  P  L  R  K  Q  F  T  A  Q  T  W  F  L  *  L :   L  E  W  V  E  E  Q  G  L  V  R  L  L  *  L  Q  E  L  P  N  Q  W  V  S  *  L  L  V  S  L  Q  P  P  F  L  L  R  D  E  E  E  Q  F  K  P  K  K  E  L  Q  L  *  E  K  M  L  I  L  *  L  S  F  Q  M  T  N  Y  *  Q  L  F  L  H  Q  P  Q  *  L  K  L  L  T  W  L  M  I  F  F  G  K  E  F  V  V  F  L  I  *  L  R :   F  L  G  *  *  M  W  I  L  L  M  C  V  L  L  W  Q  M  L  G  L  L  *  W  E  *  E  L  L  Q  :  E  R  P  E  R  E  M  Q  H  *  T  P  F  N  L  L  C  W  I  S  V  *  R  G  L  L  E  L  C  G  I  *  L  V  V  V  I  *  H  Y  L  R :   *  M  L  Q  Q  R  L  Y  M  T  L  W  I  Q  V  L  T  S  F  L  G  R  *  *  T  H  Q  *  V  D  R :   S  A  *  R  *  L  P  L  V  S  S  A  K  K  K  V  I  *  G  P  S  R :   E  T  N  *  H  R  E  M  L  H  L  E  L  T  D  D  L  R  P  F  W  K  V  V  Q  W  K  F  L  S  S  S  G  K  K  G  D  C  A  I  Q  E  L  N :   T  G  S  W  L  C  I  D  Y  Q  V  Y  L  M  E  K  P  L  S  I  S  F  F  F  I  I  M  *  N  C  L  Y  M  L  V  C  *  *  V  *  *  S  W  R  Y  Y  Q  R  *  T  I  R  I  T  I  S  L  V  S  P  M  I  C  K  V  L  L  *  S  *  Y  P  L  T  N  L  C  T  Y  M  * </first_frame>
            <second_frame>  S  S  Q  N  S  V  F  L  Y  I  S  S  K  F  Q  R  I  C  A  I  L  F  L  G  F  C  L  F  N  F  R :   C  *  K  K  K  L  D  W  N  F  R  Y  Y  L  G  G  R  L  Y  F  F  W  I  N  Q  N  S  L  S  L  S  L  G  I  F  C  Y  G  Y  L  Y  V  S  C  I  Y  A  S  *  Y  A  A  V  T  R  G  L  D  C  S  W  W  *  S  L  P  L  E  N  S  R  *  E  D  W  I  L  G  R  *  P  K  G  Y  L  K  F  A  S  I  Q  M  F  S  Q  F  P  E  C  Q  S  V  S  K  Q  R  P  L  S  K  F  T  S  R  N  F  Y  A  Q  R  R  R  *  Q  Y  N  D  Y  L  *  T  R  K  L  *  W  K  C  Q  *  E  F  D  G  F  I  K  L  E  Q  F  *  *  G  Q  N  Q  G  G  W  C  R  R  W  W  I  K  C  S  *  S  H  D  *  E  L  Y  E  G  C  R  V  L  D  C  E  H  G  Y  P  S  N  E  D  V  T  C  K  S  *  V  *  T  A  N  R  S  R  T  H  K  G  T  W  C  R  R  *  S  R  Y  R  D  E  C  C  Q  *  E  Q  A  G  H  *  G  S  S  L  R  L  R  H  G  F  C  D   : C  W  N  G  W  R  N  R  D  W  C  G  S  Y  N  C  R  N  C  Q  I  N  G  Y  L  N  C  W  Y  R  Y  N  P  L  F  F  *  G  T  K  K  S  S  S  S  P  R  R  N  C  S  F  E  R  K  C  *  Y  S  D  C  H  S  K  *  Q  I  I  D  S  C  F  S  I  N  P  S  N  *  S  F  *  P  G  *  *  Y  S  S  A  R  S  S  W  Y  F  *  Y  N  Y   : D  S  W  A  S  K  C  G  F  C  *  C  A  C  Y  Y  G  K  C  W  V  F  F  N  G  N  R  N  C  Y  R :   K  D  Q  S  E  R  C  S  I  E  R  H  S  I  S  S  A  G  Y  R  Y  R  E  G  Y  W  N  C  V  E  Y  N  W  W  *  *  S  N  I  I  *   : G  K  C  C  S  R  G  Y  I  *  P  C  G  S  K  C  *  P  H  F  W  G  G  D  R  P  I  N  K  W  T   : G  Q  H  N  A  D  C  H  W  F  Q  A  P  R  R  K  *  Y  E  A  P  P   : G  K  P  T  S  T  G  R  C  F  T  W  N  *  Q  T  T  C  V  L  S  G  R  W  F  S  G  N  S  *  V  P  Q  E  K  R  A  I  A  L  S  K  S  L   : I  Q  D  L  G  Y  A  S  T  I  K  F  I  S  W  K  N  H  C  P  S  R  F  S  L  *  *  C  R  I  A  Y  T  C  *  F  A  S  E  C  N  K  A  G  D  T  I  K  G  R  Q  L  G  S  Q  S  V  W  F  H  L  *  S  V  K  C  C  C  K  V  D  I  H  *  R  T  C  A  H  I  C   </second_frame>
            <third_frame>   V  A  K  T  L  S  F  S  I  F  L  Q  N  F  K  G  F  V  Q  F  S  F  W  V  F  V  S  S  I  S   : G  A  E  R  K  N  W  T  G  T  S  D  I  I  *  E  V  D  Y  I  F  S  G  L  I  R  I  V  *  A  *  V  W  E  Y  S  V  M  A  T  C  T  S  A  V  F  M  P  P  D  T  R  R  S  R  G  V  L  T  V  L  G  G  R  V  C  P  L  K  I  Q  D  E  K  I  G  Y  L  G  V  N  Q  K  G  T  S  S  L  P  Q  F  K  C  S  A  N  S  Q  S  V  N  Q  Y  Q  N  K  D  P  F  L  N  L  H  P  E  I  S  M  L  R  G  E  G  N  N  T  M  T  T  S  R  Q  E  S  S  S  G  N  V  S  E  S  L  M  D  S  S  S  S  N  N  F  N  E  A  K  I  K  V  V  G  V  G  G  G  G  S  N  A  V  N  R  M  I  E  S  S  M  K  G  V  E  F  W  I  V  N  T  D  I  Q  A  M  R  M  S  P  V  N  P  E  Y  R  L  P  I  G  Q  E  L  T  R  G  L  G  A  G  G  N  P  D  I  G  M  N  A  A  N  E  S  K  Q  A  I  E  E  A  V  Y  G  S  D  M  V  F  V  T  :  A  G  M  G  G  G  T  G  T  G  A  A  P  I  I  A  G  T  A  K  S  M  G  I  L  T  V  G  I  V  T  T  P  F  S  F  E  G  R  R  R  A  V  Q  A  Q  E  G  I  A  A  L  R  E  N  V  D  T  L  I  V  I  P  N  D  K  L  L  T  A  V  S  P  S  T  P  V  T  E  A  F  N  L  A  D  D  I  L  R  Q  G  V  R  G  I  S  D  I  I  T  :  I  P  G  L  V  N  V  D  F  A  D  V  R  A  I  M  A  N  A  G  S  S  L  M  G  I  G  T  A  T   : G  K  T  R  A  R  D  A  A  L  N  A  I  Q  S  P  L  L  D  I  G  I  E  R  A  T  G  I  V  W  N  I  T  G  G  S  D  L  T  L  F  E  :  V  N  A  A  A  E  V  I  Y  D  L  V  D  P  S  A  N  L  I  F  G  A  V  I  D  P  S  I  S  G  Q  :  V  S  I  T  L  I  A  T  G  F  K  R  Q  E  E  S  D  M  R  P  L  Q  :  G  N  Q  L  A  Q  G  D  A  S  L  G  T  N  R  R  P  A  S  F  L  E  G  G  S  V  E  I  P  E  F  L  R  K  K  G  R  L  R  Y  P  R  A  *  :  Y  R  I  L  V  M  H  R  L  S  S  L  S  H  G  K  T  I  V  H  L  V  F  L  Y  N  N  V  E  L  P  I  H  V  S  L  L  V  S  V  I  K  L  E  I  L  S  K  V  D  N  *  D  H  N  Q  S  G  F  T  Y  D  L  *  S  V  A  V  K  L  I  S  I  D  E  L  V  H  I  Y  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0018D02.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38619" stop="39266"/>
                    <exon start="41751" stop="42050"/>
                    <exon start="46869" stop="46959"/>
                    <exon start="52961" stop="53085"/>
                    <exon start="54809" stop="54901"/>
                    <exon start="55475" stop="55540"/>
                    <exon start="55645" stop="55776"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1452</number_coding_nucleotides>
                  <number_encoded_amino_acids>484</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VWEYSVMATCTSAVFMPPDTRRSRGVLTVLGGRVCPLKIQDEKIGYLGVNQKGTSSLPQFKCSANSQSVNQYQNKDPFLNLHPEISMLRGEGNNTMTTSRQESSSGNVSESLMDSSSSNNFNEAKIKVVGVGGGGSNAVNRMIESSMKGVEFWIVNTDIQAMRMSPVNPEYRLPIGQELTRGLGAGGNPDIGMNAANESKQAIEEAVYGSDMVFVTAGMGGGTGTGAAPIIAGTAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIAALRENVDTLIVIPNDKLLTAVSPSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSSLMGIGTATGKTRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFEVNAAAEVIYDLVDPSANLIFGAVIDPSISGQVSITLIATGFKRQEESDMRPLQGNQLAQGDASLGTNRRPASFLEGGSVEIPEFLRKKGRLRYPRA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="36807" e_stop="36899"/>
            <exon e_start="38527" e_stop="39266"/>
            <exon e_start="41751" e_stop="42050"/>
            <exon e_start="46869" e_stop="46959"/>
            <exon e_start="52961" e_stop="53085"/>
            <exon e_start="54809" e_stop="54901"/>
            <exon e_start="55475" e_stop="55540"/>
            <exon e_start="55645" e_stop="55776"/>
            <exon e_start="55877" e_stop="55943"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.094" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="0.992"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.929" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.848" e_score="0.992"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36807" e_stop="36899" e_length="93"/>
          </exon>
          <intron i_serial="1" don_prob="0.094" acc_prob="0.998">
            <gDNA_intron_boundary i_start="36900" i_stop="38526" i_length="1627"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="38527" e_stop="39266" e_length="740"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="39267" i_stop="41750" i_length="2484"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41751" e_stop="42050" e_length="300"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="42051" i_stop="46868" i_length="4818"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="46869" e_stop="46959" e_length="91"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.959">
            <gDNA_intron_boundary i_start="46960" i_stop="52960" i_length="6001"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="52961" e_stop="53085" e_length="125"/>
          </exon>
          <intron i_serial="5" don_prob="0.978" acc_prob="0.995">
            <gDNA_intron_boundary i_start="53086" i_stop="54808" i_length="1723"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="54809" e_stop="54901" e_length="93"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.929">
            <gDNA_intron_boundary i_start="54902" i_stop="55474" i_length="573"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="55475" e_stop="55540" e_length="66"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="55541" i_stop="55644" i_length="104"/>
          </intron>
          <exon e_serial="8" e_score="0.992">
            <gDNA_exon_boundary e_start="55645" e_stop="55776" e_length="132"/>
          </exon>
          <intron i_serial="8" don_prob="0.962" acc_prob="0.848">
            <gDNA_intron_boundary i_start="55777" i_stop="55876" i_length="100"/>
          </intron>
          <exon e_serial="9" e_score="0.985">
            <gDNA_exon_boundary e_start="55877" e_stop="55943" e_length="67"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36807" stop="36899"/>
              <exon start="38527" stop="39126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36879" stop="36899"/>
              <exon start="38527" stop="39063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39126" stop="39266"/>
              <exon start="41751" stop="42050"/>
              <exon start="46869" stop="46959"/>
              <exon start="52961" stop="53076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39236" stop="39266"/>
              <exon start="41751" stop="42050"/>
              <exon start="46869" stop="46959"/>
              <exon start="52961" stop="53085"/>
              <exon start="54809" stop="54901"/>
              <exon start="55475" stop="55540"/>
              <exon start="55645" stop="55776"/>
              <exon start="55877" stop="55943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39248" stop="39266"/>
              <exon start="41751" stop="42050"/>
              <exon start="46869" stop="46959"/>
              <exon start="52961" stop="53014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325732" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGTAGCCAAAACTCTGTCTTTCTCTATATTTCTTCAAAATTTCAAAGGATTTGTGCAATTCTCTTTTTGGGTTTTTGTCTCTTCAATTTCAG : GTGCTGAAAGAAAAAACTGGACTGGAACTTCAGATATTATCTAGGAGGTCGATTATATTTTTTCTGGATTAATCAGAATAGTTTGAGCTTGAGTTTGGGAATATTCTGTTATGGCTACTTGTACGTCAGCTGTATTTATGCCTCCTGATACGCGGCGGTCACGAGGGGTCTTGACTGTTCTTGGTGGTAGAGTTTGCCCCTTGAAAATTCAAGATGAGAAGATTGGATACTTGGGCGTTAACCAAAAGGGTACCTCAAGTTTGCCTCAATTCAAATGTTCAGCCAATTCCCAGAGTGTCAATCAGTATCAAAACAAAGACCCCTTTCTAAATTTACATCCCGAAATTTCTATGCTCAGAGGCGAAGGTAACAATACAATGACTACCTCTAGACAAGAAAGCTCTAGTGGAAATGTCAGTGAGAGTTTGATGGATTCATCAAGCTCGAACAATTTTAATGAGGCCAAAATCAAGGTGGTTGGTGTAGGAGGTGGTGGATCAAATGCAGTTAATCGCATGATTGAGAGCTCTATGAAGGGTGTAGAGTTTTGGATTGTGAACACGGATATCCAAGCAATGAGGATGTCACCTGTAAATCCTGAGTATAGACTGCCAATAGGTCAAGAACTCACAAGGGGACTTGGTGCAGGCGGTAATCCAGATATAGGGATGAATGCTGCCAATGAGAGCAAGCAGGCCATTGAGGAAGCAGTTTACGGCTCAGACATGGTTTTTGTGACT : GCTGGAATGGGTGGAGGAACAGGGACTGGTGCGGCTCCTATAATTGCAGGAACTGCCAAATCAATGGGTATCTTAACTGTTGGTATCGTTACAACCCCCTTTTCTTTTGAGGGACGAAGAAGAGCAGTTCAAGCCCAAGAAGGAATTGCAGCTTTGAGAGAAAATGTTGATACTCTGATTGTCATTCCAAATGACAAATTATTGACAGCTGTTTCTCCATCAACCCCAGTAACTGAAGCTTTTAACCTGGCTGATGATATTCTTCGGCAAGGAGTTCGTGGTATTTCTGATATAATTACG : ATTCCTGGGCTAGTAAATGTGGATTTTGCTGATGTGCGTGCTATTATGGCAAATGCTGGGTCTTCTTTAATGGGAATAGGAACTGCTACAG : GAAAGACCAGAGCGAGAGATGCAGCATTGAACGCCATTCAATCTCCTCTGCTGGATATCGGTATAGAGAGGGCTACTGGAATTGTGTGGAATATAACTGGTGGTAGTGATCTAACATTATTTGAG : GTAAATGCTGCAGCAGAGGTTATATATGACCTTGTGGATCCAAGTGCTAACCTCATTTTTGGGGCGGTGATAGACCCATCAATAAGTGGACAG : GTCAGCATAACGCTGATTGCCACTGGTTTCAAGCGCCAAGAAGAAAGTGATATGAGGCCCCTCCAG : GGAAACCAACTAGCACAGGGAGATGCTTCACTTGGAACTAACAGACGACCTGCGTCCTTTCTGGAAGGTGGTTCAGTGGAAATTCCTGAGTTCCTCAGGAAAAAAGGGCGATTGCGCTATCCAAGAGCTTAA : GATCTTGGTTATGCATCGACTATCAAGTTTATCTCATGGAAAAACCATTGTCCATCTCGTTTTTCTT</gDNA_template>
            <first_frame> *  *  P  K  L  C  L  S  L  Y  F  F  K  I  S  K  D  L  C  N  S  L  F  G  F  L  S  L  Q  F  Q  :  V  L  K  E  K  T  G  L  E  L  Q  I  L  S  R  R  S  I  I  F  F  L  D  *  S  E  *  F  E  L  E  F  G  N  I  L  L  W  L  L  V  R  Q  L  Y  L  C  L  L  I  R  G  G  H  E  G  S  *  L  F  L  V  V  E  F  A  P  *  K  F  K  M  R  R  L  D  T  W  A  L  T  K  R  V  P  Q  V  C  L  N  S  N  V  Q  P  I  P  R  V  S  I  S  I  K  T  K  T  P  F  *  I  Y  I  P  K  F  L  C  S  E  A  K  V  T  I  Q  *  L  P  L  D  K  K  A  L  V  E  M  S  V  R  V  *  W  I  H  Q  A  R  T  I  L  M  R  P  K  S  R  W  L  V  *  E  V  V  D  Q  M  Q  L  I  A  *  L  R  A  L  *  R  V  *  S  F  G  L  *  T  R  I  S  K  Q  *  G  C  H  L  *  I  L  S  I  D  C  Q  *  V  K  N  S  Q  G  D  L  V  Q  A  V  I  Q  I  *  G  *  M  L  P  M  R  A  S  R  P  L  R  K  Q  F  T  A  Q  T  W  F  L  *  L :   L  E  W  V  E  E  Q  G  L  V  R  L  L  *  L  Q  E  L  P  N  Q  W  V  S  *  L  L  V  S  L  Q  P  P  F  L  L  R  D  E  E  E  Q  F  K  P  K  K  E  L  Q  L  *  E  K  M  L  I  L  *  L  S  F  Q  M  T  N  Y  *  Q  L  F  L  H  Q  P  Q  *  L  K  L  L  T  W  L  M  I  F  F  G  K  E  F  V  V  F  L  I  *  L  R :   F  L  G  *  *  M  W  I  L  L  M  C  V  L  L  W  Q  M  L  G  L  L  *  W  E  *  E  L  L  Q  :  E  R  P  E  R  E  M  Q  H  *  T  P  F  N  L  L  C  W  I  S  V  *  R  G  L  L  E  L  C  G  I  *  L  V  V  V  I  *  H  Y  L  R :   *  M  L  Q  Q  R  L  Y  M  T  L  W  I  Q  V  L  T  S  F  L  G  R  *  *  T  H  Q  *  V  D  R :   S  A  *  R  *  L  P  L  V  S  S  A  K  K  K  V  I  *  G  P  S  R :   E  T  N  *  H  R  E  M  L  H  L  E  L  T  D  D  L  R  P  F  W  K  V  V  Q  W  K  F  L  S  S  S  G  K  K  G  D  C  A  I  Q  E  L  K :   I  L  V  M  H  R  L  S  S  L  S  H  G  K  T  I  V  H  L  V  F  L </first_frame>
            <second_frame>  S  S  Q  N  S  V  F  L  Y  I  S  S  K  F  Q  R  I  C  A  I  L  F  L  G  F  C  L  F  N  F  R :   C  *  K  K  K  L  D  W  N  F  R  Y  Y  L  G  G  R  L  Y  F  F  W  I  N  Q  N  S  L  S  L  S  L  G  I  F  C  Y  G  Y  L  Y  V  S  C  I  Y  A  S  *  Y  A  A  V  T  R  G  L  D  C  S  W  W  *  S  L  P  L  E  N  S  R  *  E  D  W  I  L  G  R  *  P  K  G  Y  L  K  F  A  S  I  Q  M  F  S  Q  F  P  E  C  Q  S  V  S  K  Q  R  P  L  S  K  F  T  S  R  N  F  Y  A  Q  R  R  R  *  Q  Y  N  D  Y  L  *  T  R  K  L  *  W  K  C  Q  *  E  F  D  G  F  I  K  L  E  Q  F  *  *  G  Q  N  Q  G  G  W  C  R  R  W  W  I  K  C  S  *  S  H  D  *  E  L  Y  E  G  C  R  V  L  D  C  E  H  G  Y  P  S  N  E  D  V  T  C  K  S  *  V  *  T  A  N  R  S  R  T  H  K  G  T  W  C  R  R  *  S  R  Y  R  D  E  C  C  Q  *  E  Q  A  G  H  *  G  S  S  L  R  L  R  H  G  F  C  D   : C  W  N  G  W  R  N  R  D  W  C  G  S  Y  N  C  R  N  C  Q  I  N  G  Y  L  N  C  W  Y  R  Y  N  P  L  F  F  *  G  T  K  K  S  S  S  S  P  R  R  N  C  S  F  E  R  K  C  *  Y  S  D  C  H  S  K  *  Q  I  I  D  S  C  F  S  I  N  P  S  N  *  S  F  *  P  G  *  *  Y  S  S  A  R  S  S  W  Y  F  *  Y  N  Y   : D  S  W  A  S  K  C  G  F  C  *  C  A  C  Y  Y  G  K  C  W  V  F  F  N  G  N  R  N  C  Y  R :   K  D  Q  S  E  R  C  S  I  E  R  H  S  I  S  S  A  G  Y  R  Y  R  E  G  Y  W  N  C  V  E  Y  N  W  W  *  *  S  N  I  I  *   : G  K  C  C  S  R  G  Y  I  *  P  C  G  S  K  C  *  P  H  F  W  G  G  D  R  P  I  N  K  W  T   : G  Q  H  N  A  D  C  H  W  F  Q  A  P  R  R  K  *  Y  E  A  P  P   : G  K  P  T  S  T  G  R  C  F  T  W  N  *  Q  T  T  C  V  L  S  G  R  W  F  S  G  N  S  *  V  P  Q  E  K  R  A  I  A  L  S  K  S  L   : R  S  W  L  C  I  D  Y  Q  V  Y  L  M  E  K  P  L  S  I  S  F  F   </second_frame>
            <third_frame>   V  A  K  T  L  S  F  S  I  F  L  Q  N  F  K  G  F  V  Q  F  S  F  W  V  F  V  S  S  I  S   : G  A  E  R  K  N  W  T  G  T  S  D  I  I  *  E  V  D  Y  I  F  S  G  L  I  R  I  V  *  A  *  V  W  E  Y  S  V  M  A  T  C  T  S  A  V  F  M  P  P  D  T  R  R  S  R  G  V  L  T  V  L  G  G  R  V  C  P  L  K  I  Q  D  E  K  I  G  Y  L  G  V  N  Q  K  G  T  S  S  L  P  Q  F  K  C  S  A  N  S  Q  S  V  N  Q  Y  Q  N  K  D  P  F  L  N  L  H  P  E  I  S  M  L  R  G  E  G  N  N  T  M  T  T  S  R  Q  E  S  S  S  G  N  V  S  E  S  L  M  D  S  S  S  S  N  N  F  N  E  A  K  I  K  V  V  G  V  G  G  G  G  S  N  A  V  N  R  M  I  E  S  S  M  K  G  V  E  F  W  I  V  N  T  D  I  Q  A  M  R  M  S  P  V  N  P  E  Y  R  L  P  I  G  Q  E  L  T  R  G  L  G  A  G  G  N  P  D  I  G  M  N  A  A  N  E  S  K  Q  A  I  E  E  A  V  Y  G  S  D  M  V  F  V  T  :  A  G  M  G  G  G  T  G  T  G  A  A  P  I  I  A  G  T  A  K  S  M  G  I  L  T  V  G  I  V  T  T  P  F  S  F  E  G  R  R  R  A  V  Q  A  Q  E  G  I  A  A  L  R  E  N  V  D  T  L  I  V  I  P  N  D  K  L  L  T  A  V  S  P  S  T  P  V  T  E  A  F  N  L  A  D  D  I  L  R  Q  G  V  R  G  I  S  D  I  I  T  :  I  P  G  L  V  N  V  D  F  A  D  V  R  A  I  M  A  N  A  G  S  S  L  M  G  I  G  T  A  T   : G  K  T  R  A  R  D  A  A  L  N  A  I  Q  S  P  L  L  D  I  G  I  E  R  A  T  G  I  V  W  N  I  T  G  G  S  D  L  T  L  F  E  :  V  N  A  A  A  E  V  I  Y  D  L  V  D  P  S  A  N  L  I  F  G  A  V  I  D  P  S  I  S  G  Q  :  V  S  I  T  L  I  A  T  G  F  K  R  Q  E  E  S  D  M  R  P  L  Q  :  G  N  Q  L  A  Q  G  D  A  S  L  G  T  N  R  R  P  A  S  F  L  E  G  G  S  V  E  I  P  E  F  L  R  K  K  G  R  L  R  Y  P  R  A  *  :  D  L  G  Y  A  S  T  I  K  F  I  S  W  K  N  H  C  P  S  R  F  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0018D02.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38619" stop="39266"/>
                    <exon start="41751" stop="42050"/>
                    <exon start="46869" stop="46959"/>
                    <exon start="52961" stop="53085"/>
                    <exon start="54809" stop="54901"/>
                    <exon start="55475" stop="55540"/>
                    <exon start="55645" stop="55776"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1452</number_coding_nucleotides>
                  <number_encoded_amino_acids>484</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VWEYSVMATCTSAVFMPPDTRRSRGVLTVLGGRVCPLKIQDEKIGYLGVNQKGTSSLPQFKCSANSQSVNQYQNKDPFLNLHPEISMLRGEGNNTMTTSRQESSSGNVSESLMDSSSSNNFNEAKIKVVGVGGGGSNAVNRMIESSMKGVEFWIVNTDIQAMRMSPVNPEYRLPIGQELTRGLGAGGNPDIGMNAANESKQAIEEAVYGSDMVFVTAGMGGGTGTGAAPIIAGTAKSMGILTVGIVTTPFSFEGRRRAVQAQEGIAALRENVDTLIVIPNDKLLTAVSPSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMANAGSSLMGIGTATGKTRARDAALNAIQSPLLDIGIERATGIVWNITGGSDLTLFEVNAAAEVIYDLVDPSANLIFGAVIDPSISGQVSITLIATGFKRQEESDMRPLQGNQLAQGDASLGTNRRPASFLEGGSVEIPEFLRKKGRLRYPRA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="54863" e_stop="54901"/>
            <exon e_start="55475" e_stop="55540"/>
            <exon e_start="55645" e_stop="56148"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.929" e_score="0.974"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="54863" e_stop="54901" e_length="39"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.929">
            <gDNA_intron_boundary i_start="54902" i_stop="55474" i_length="573"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55475" e_stop="55540" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="55541" i_stop="55644" i_length="104"/>
          </intron>
          <exon e_serial="3" e_score="0.919">
            <gDNA_exon_boundary e_start="55645" e_stop="56148" e_length="504"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54863" stop="54901"/>
              <exon start="55475" stop="55540"/>
              <exon start="55645" stop="56148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366159" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTTTGGGGCGGTGATAGACCCATCAATAAGTGGACAG : GTCAGCATAACGCTGATTGCCACTGGTTTCAAGCGCCAAGAAGAAAGTGATATGAGGCCCCTCCAG : GGAAACCAACTAGCACAGGGAGATGCTTCACTTGGAACTAACAGACGACCTGCGTCCTTTCTGGAAGGTGGTTCAGTGGAAATTCCTGAGTTCCTCAGGAAAAAAGGGCGATTGCGCTATCCAAGAGCTTAAGTTAGTCCTTCATTTTCCTGCATGTATAGTACTTCCCTTTTTCTTCTTGTTCTCCAACATCTCTATCTTTCAAAGTGATACATATGCGTTATACATACAGGATCTTGGTTATGCATCGACTATCAAGTTTATCTCATGGAAAAACCATTGTCCATCTCGTTTTTCTTTATAATAATGTAGAATTGCCTATACATGTTAGTTTGCTAGTGAGTGTAATAAAGCTGGAGATACTATCAAAGGTAGACAATTAGGATCACAATCAGTCTGGTTTCACCTATGATCTGTAAAGTGTTGCTGTAAAGTTGATATCCATTGACGAACTTGTGCACATATATGTGATTTAGGTTCAGTTTTGAACTTGTTCATCAGCTT</gDNA_template>
            <first_frame> I  F  G  A  V  I  D  P  S  I  S  G  Q  :  V  S  I  T  L  I  A  T  G  F  K  R  Q  E  E  S  D  M  R  P  L  Q  :  G  N  Q  L  A  Q  G  D  A  S  L  G  T  N  R  R  P  A  S  F  L  E  G  G  S  V  E  I  P  E  F  L  R  K  K  G  R  L  R  Y  P  R  A  *  V  S  P  S  F  S  C  M  Y  S  T  S  L  F  L  L  V  L  Q  H  L  Y  L  S  K  *  Y  I  C  V  I  H  T  G  S  W  L  C  I  D  Y  Q  V  Y  L  M  E  K  P  L  S  I  S  F  F  F  I  I  M  *  N  C  L  Y  M  L  V  C  *  *  V  *  *  S  W  R  Y  Y  Q  R  *  T  I  R  I  T  I  S  L  V  S  P  M  I  C  K  V  L  L  *  S  *  Y  P  L  T  N  L  C  T  Y  M  *  F  R  F  S  F  E  L  V  H  Q  L </first_frame>
            <second_frame>  F  L  G  R  *  *  T  H  Q  *  V  D  R :   S  A  *  R  *  L  P  L  V  S  S  A  K  K  K  V  I  *  G  P  S  R :   E  T  N  *  H  R  E  M  L  H  L  E  L  T  D  D  L  R  P  F  W  K  V  V  Q  W  K  F  L  S  S  S  G  K  K  G  D  C  A  I  Q  E  L  K  L  V  L  H  F  P  A  C  I  V  L  P  F  F  F  L  F  S  N  I  S  I  F  Q  S  D  T  Y  A  L  Y  I  Q  D  L  G  Y  A  S  T  I  K  F  I  S  W  K  N  H  C  P  S  R  F  S  L  *  *  C  R  I  A  Y  T  C  *  F  A  S  E  C  N  K  A  G  D  T  I  K  G  R  Q  L  G  S  Q  S  V  W  F  H  L  *  S  V  K  C  C  C  K  V  D  I  H  *  R  T  C  A  H  I  C  D  L  G  S  V  L  N  L  F  I  S   </second_frame>
            <third_frame>   F  W  G  G  D  R  P  I  N  K  W  T   : G  Q  H  N  A  D  C  H  W  F  Q  A  P  R  R  K  *  Y  E  A  P  P   : G  K  P  T  S  T  G  R  C  F  T  W  N  *  Q  T  T  C  V  L  S  G  R  W  F  S  G  N  S  *  V  P  Q  E  K  R  A  I  A  L  S  K  S  L  S  *  S  F  I  F  L  H  V  *  Y  F  P  F  S  S  C  S  P  T  S  L  S  F  K  V  I  H  M  R  Y  T  Y  R  I  L  V  M  H  R  L  S  S  L  S  H  G  K  T  I  V  H  L  V  F  L  Y  N  N  V  E  L  P  I  H  V  S  L  L  V  S  V  I  K  L  E  I  L  S  K  V  D  N  *  D  H  N  Q  S  G  F  T  Y  D  L  *  S  V  A  V  K  L  I  S  I  D  E  L  V  H  I  Y  V  I  *  V  Q  F  *  T  C  S  S  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0018D02.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55658" stop="55948"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HREMLHLELTDDLRPFWKVVQWKFLSSSGKKGDCAIQELKLVLHFPACIVLPFFFLFSNISIFQSDTYALYIQDLGYASTIKFISWKNHCPSRFSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0018D02.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54863" stop="54901"/>
                    <exon start="55475" stop="55540"/>
                    <exon start="55645" stop="55776"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFGAVIDPSISGQVSITLIATGFKRQEESDMRPLQGNQLAQGDASLGTNRRPASFLEGGSVEIPEFLRKKGRLRYPRA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0018D02.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="4" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55806" stop="56027"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YFPFSSCSPTSLSFKVIHMRYTYRILVMHRLSSLSHGKTIVHLVFLYNNVELPIHVSLLVSVIKLEILSKVDN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="36779" e_stop="36808"/>
            <exon e_start="38527" e_stop="38986"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.467" acc_prob="0.998" e_score="0.967"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="36779" e_stop="36808" e_length="30"/>
          </exon>
          <intron i_serial="1" don_prob="0.467" acc_prob="0.998">
            <gDNA_intron_boundary i_start="36809" i_stop="38526" i_length="1718"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="38527" e_stop="38986" e_length="460"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36779" stop="36808"/>
              <exon start="38527" stop="38986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366158" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTGTGAGCTGAATACAACACCACCAATA : GTGCTGAAAGAAAAAACTGGACTGGAACTTCAGATATTATCTAGGAGGTCGATTATATTTTTTCTGGATTAATCAGAATAGTTTGAGCTTGAGTTTGGGAATATTCTGTTATGGCTACTTGTACGTCAGCTGTATTTATGCCTCCTGATACGCGGCGGTCACGAGGGGTCTTGACTGTTCTTGGTGGTAGAGTTTGCCCCTTGAAAATTCAAGATGAGAAGATTGGATACTTGGGCGTTAACCAAAAGGGTACCTCAAGTTTGCCTCAATTCAAATGTTCAGCCAATTCCCAGAGTGTCAATCAGTATCAAAACAAAGACCCCTTTCTAAATTTACATCCCGAAATTTCTATGCTCAGAGGCGAAGGTAACAATACAATGACTACCTCTAGACAAGAAAGCTCTAGTGGAAATGTCAGTGAGAGTTTGATGGATTCATCAAGCTCGAACAATTTTAATGA</gDNA_template>
            <first_frame> L  C  E  L  N  T  T  P  P  I  :  V  L  K  E  K  T  G  L  E  L  Q  I  L  S  R  R  S  I  I  F  F  L  D  *  S  E  *  F  E  L  E  F  G  N  I  L  L  W  L  L  V  R  Q  L  Y  L  C  L  L  I  R  G  G  H  E  G  S  *  L  F  L  V  V  E  F  A  P  *  K  F  K  M  R  R  L  D  T  W  A  L  T  K  R  V  P  Q  V  C  L  N  S  N  V  Q  P  I  P  R  V  S  I  S  I  K  T  K  T  P  F  *  I  Y  I  P  K  F  L  C  S  E  A  K  V  T  I  Q  *  L  P  L  D  K  K  A  L  V  E  M  S  V  R  V  *  W  I  H  Q  A  R  T  I  L  M  </first_frame>
            <second_frame>  F  V  S  *  I  Q  H  H  Q  * :   C  *  K  K  K  L  D  W  N  F  R  Y  Y  L  G  G  R  L  Y  F  F  W  I  N  Q  N  S  L  S  L  S  L  G  I  F  C  Y  G  Y  L  Y  V  S  C  I  Y  A  S  *  Y  A  A  V  T  R  G  L  D  C  S  W  W  *  S  L  P  L  E  N  S  R  *  E  D  W  I  L  G  R  *  P  K  G  Y  L  K  F  A  S  I  Q  M  F  S  Q  F  P  E  C  Q  S  V  S  K  Q  R  P  L  S  K  F  T  S  R  N  F  Y  A  Q  R  R  R  *  Q  Y  N  D  Y  L  *  T  R  K  L  *  W  K  C  Q  *  E  F  D  G  F  I  K  L  E  Q  F  *  * </second_frame>
            <third_frame>   L  *  A  E  Y  N  T  T  N   : S  A  E  R  K  N  W  T  G  T  S  D  I  I  *  E  V  D  Y  I  F  S  G  L  I  R  I  V  *  A  *  V  W  E  Y  S  V  M  A  T  C  T  S  A  V  F  M  P  P  D  T  R  R  S  R  G  V  L  T  V  L  G  G  R  V  C  P  L  K  I  Q  D  E  K  I  G  Y  L  G  V  N  Q  K  G  T  S  S  L  P  Q  F  K  C  S  A  N  S  Q  S  V  N  Q  Y  Q  N  K  D  P  F  L  N  L  H  P  E  I  S  M  L  R  G  E  G  N  N  T  M  T  T  S  R  Q  E  S  S  S  G  N  V  S  E  S  L  M  D  S  S  S  S  N  N  F  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0018D02.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38619" stop="38984"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VWEYSVMATCTSAVFMPPDTRRSRGVLTVLGGRVCPLKIQDEKIGYLGVNQKGTSSLPQFKCSANSQSVNQYQNKDPFLNLHPEISMLRGEGNNTMTTSRQESSSGNVSESLMDSSSSNNFN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="60895" PGL_stop="63451"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60895" e_stop="61694"/>
            <exon e_start="63437" e_stop="63451"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.154" e_score="0.973"/>
          <exon-only e_score="0.800"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="60895" e_stop="61694" e_length="800"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.154">
            <gDNA_intron_boundary i_start="61695" i_stop="63436" i_length="1742"/>
          </intron>
          <exon e_serial="2" e_score="0.800">
            <gDNA_exon_boundary e_start="63437" e_stop="63451" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60895" stop="61345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60937" stop="61668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60937" stop="61575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60955" stop="61694"/>
              <exon start="63437" stop="63451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61016" stop="61172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286320" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTACACTATAGTTTTAGAGACACCAAAATAAAACCATCATTTCTCCCTTCAACAACACTCCCTCTTGGCTAGCTCCAATACTATAGTTTGTGGAGACTAGCCAAACCACACACACAAAAAAATCTTCCTTCTACAATTTGCTTCAAATTCATTCAATATCAACAATAACAAATTCAACGACACGTTCATTATGACGAACGAACGTGAAAATCCATCATTTTTTTCTATACATCCCTCAAGACGCCCCGACCCTAACAATGACAAGGCCGAATCAACAAGGCCTAATAATTTACTAGTCAAGAAAAATAACGTCACGATTAAACGTGATCAAGAAAAATTCAACAATACAGAAATTACGTCAGACATGATCAACGTGCACGTGGGACATGTTGGCGCGCATAACGAGGGCGGACCGATGAGGACAGATGATAGTGGACGTGAAAGATTGAAGAGACATAGAATTGAAGTGGCAGGACATGTATGGATACCAGAAATTTGGGGACAAGAAGAATTACTCAAAGATTGGATTGATTGTAGTGCATTTGATTCAAAATTGAATAATAATAATAATATAATGTCAGCTAGGGCTGCTTTGGTTGAAGAAAGAAGAAGAAATAATTCATCTTGCAGATTGAGAATTGAAAATAGCTATTGAAATTATGCACCAAAAAAAAAAAAAAAGATGAGTTTTAATTTTTATTTTATTTTTTTGGTTTTTTTTCTTCTTCTCTTTAATTGAACTGTTTTATTATTTTTATCATAATAATTGTGTGTTTCCATGTTAATACATTGAAGAAA : AAAAAGAAACAACAA</gDNA_template>
            <first_frame> S  Y  T  I  V  L  E  T  P  K  *  N  H  H  F  S  L  Q  Q  H  S  L  L  A  S  S  N  T  I  V  C  G  D  *  P  N  H  T  H  K  K  I  F  L  L  Q  F  A  S  N  S  F  N  I  N  N  N  K  F  N  D  T  F  I  M  T  N  E  R  E  N  P  S  F  F  S  I  H  P  S  R  R  P  D  P  N  N  D  K  A  E  S  T  R  P  N  N  L  L  V  K  K  N  N  V  T  I  K  R  D  Q  E  K  F  N  N  T  E  I  T  S  D  M  I  N  V  H  V  G  H  V  G  A  H  N  E  G  G  P  M  R  T  D  D  S  G  R  E  R  L  K  R  H  R  I  E  V  A  G  H  V  W  I  P  E  I  W  G  Q  E  E  L  L  K  D  W  I  D  C  S  A  F  D  S  K  L  N  N  N  N  N  I  M  S  A  R  A  A  L  V  E  E  R  R  R  N  N  S  S  C  R  L  R  I  E  N  S  Y  *  N  Y  A  P  K  K  K  K  K  M  S  F  N  F  Y  F  I  F  L  V  F  F  L  L  L  F  N  *  T  V  L  L  F  L  S  *  *  L  C  V  S  M  L  I  H  *  R  K :   K  R  N  N   </first_frame>
            <second_frame>  L  T  L  *  F  *  R  H  Q  N  K  T  I  I  S  P  F  N  N  T  P  S  W  L  A  P  I  L  *  F  V  E  T  S  Q  T  T  H  T  K  K  S  S  F  Y  N  L  L  Q  I  H  S  I  S  T  I  T  N  S  T  T  R  S  L  *  R  T  N  V  K  I  H  H  F  F  L  Y  I  P  Q  D  A  P  T  L  T  M  T  R  P  N  Q  Q  G  L  I  I  Y  *  S  R  K  I  T  S  R  L  N  V  I  K  K  N  S  T  I  Q  K  L  R  Q  T  *  S  T  C  T  W  D  M  L  A  R  I  T  R  A  D  R  *  G  Q  M  I  V  D  V  K  D  *  R  D  I  E  L  K  W  Q  D  M  Y  G  Y  Q  K  F  G  D  K  K  N  Y  S  K  I  G  L  I  V  V  H  L  I  Q  N  *  I  I  I  I  I  *  C  Q  L  G  L  L  W  L  K  K  E  E  E  I  I  H  L  A  D  *  E  L  K  I  A  I  E  I  M  H  Q  K  K  K  K  R  *  V  L  I  F  I  L  F  F  W  F  F  F  F  F  S  L  I  E  L  F  Y  Y  F  Y  H  N  N  C  V  F  P  C  *  Y  I  E  E   : K  K  E  T  T  </second_frame>
            <third_frame>   L  H  Y  S  F  R  D  T  K  I  K  P  S  F  L  P  S  T  T  L  P  L  G  *  L  Q  Y  Y  S  L  W  R  L  A  K  P  H  T  Q  K  N  L  P  S  T  I  C  F  K  F  I  Q  Y  Q  Q  *  Q  I  Q  R  H  V  H  Y  D  E  R  T  *  K  S  I  I  F  F  Y  T  S  L  K  T  P  R  P  *  Q  *  Q  G  R  I  N  K  A  *  *  F  T  S  Q  E  K  *  R  H  D  *  T  *  S  R  K  I  Q  Q  Y  R  N  Y  V  R  H  D  Q  R  A  R  G  T  C  W  R  A  *  R  G  R  T  D  E  D  R  *  *  W  T  *  K  I  E  E  T  *  N  *  S  G  R  T  C  M  D  T  R  N  L  G  T  R  R  I  T  Q  R  L  D  *  L  *  C  I  *  F  K  I  E  *  *  *  *  Y  N  V  S  *  G  C  F  G  *  R  K  K  K  K  *  F  I  L  Q  I  E  N  *  K  *  L  L  K  L  C  T  K  K  K  K  K  D  E  F  *  F  L  F  Y  F  F  G  F  F  S  S  S  L  *  L  N  C  F  I  I  F  I  I  I  I  V  C  F  H  V  N  T  L  K  K  :  K  K  K  Q  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0018D02.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60997" stop="61551"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PNHTHKKIFLLQFASNSFNINNNKFNDTFIMTNERENPSFFSIHPSRRPDPNNDKAESTRPNNLLVKKNNVTIKRDQEKFNNTEITSDMINVHVGHVGAHNEGGPMRTDDSGRERLKRHRIEVAGHVWIPEIWGQEELLKDWIDCSAFDSKLNNNNNIMSARAALVEERRRNNSSCRLRIENSY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="76586" PGL_stop="78400"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77613" e_stop="77651"/>
            <exon e_start="77935" e_stop="78400"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.590"/>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.590">
            <gDNA_exon_boundary e_start="77613" e_stop="77651" e_length="39"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="77652" i_stop="77934" i_length="283"/>
          </intron>
          <exon e_serial="2" e_score="0.968">
            <gDNA_exon_boundary e_start="77935" e_stop="78400" e_length="466"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77613" stop="77651"/>
              <exon start="77935" stop="78400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77945" stop="78323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77957" stop="78323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282347" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACATTAGACCGAAGACATTGTTTGCTTGGTTTGATTTCT : TAAATAGATGCTCATATTTTCACAAACCACATTGCTTCTAACATTCATTATTTACAGAGATGTCACACTTTAAGGTATGAATATATATGCCTTACAGGGTGATCTTCTGCAACTAAACTCAGATGAAGAAACATCATATTTAAACCAATCAAACAGCCATGAAAAATGTCAAACAATTACAACATTGTAAATAAGGCAGAAACTTCAAAGAGCTGTTTTAAAATCCAAAGTAGGTATAAAAATTAGATCTTTGAGGCAAAACTGATGCCCTCCTGTGCCAATTGATCCAAGGTAGCAGGGGGTTGAACCTTTGCAACCTTAGCAATTGCCTTGTTCTCTTCAGGTGACCCACTCTCGAGGAATGCACCAACGATCTTTCCATCTTTGATCCAGTATTGTCCAAACTTGTGAGTTGCAGAGTTGGGATCAGCGTCCCCAAAGAGCACTGTTTCACCCACATTATCAC</gDNA_template>
            <first_frame> T  L  D  R  R  H  C  L  L  G  L  I  S  :  *  I  D  A  H  I  F  T  N  H  I  A  S  N  I  H  Y  L  Q  R  C  H  T  L  R  Y  E  Y  I  C  L  T  G  *  S  S  A  T  K  L  R  *  R  N  I  I  F  K  P  I  K  Q  P  *  K  M  S  N  N  Y  N  I  V  N  K  A  E  T  S  K  S  C  F  K  I  Q  S  R  Y  K  N  *  I  F  E  A  K  L  M  P  S  C  A  N  *  S  K  V  A  G  G  *  T  F  A  T  L  A  I  A  L  F  S  S  G  D  P  L  S  R  N  A  P  T  I  F  P  S  L  I  Q  Y  C  P  N  L  *  V  A  E  L  G  S  A  S  P  K  S  T  V  S  P  T  L  S  </first_frame>
            <second_frame>  H  *  T  E  D  I  V  C  L  V  *  F  L :   K  *  M  L  I  F  S  Q  T  T  L  L  L  T  F  I  I  Y  R  D  V  T  L  *  G  M  N  I  Y  A  L  Q  G  D  L  L  Q  L  N  S  D  E  E  T  S  Y  L  N  Q  S  N  S  H  E  K  C  Q  T  I  T  T  L  *  I  R  Q  K  L  Q  R  A  V  L  K  S  K  V  G  I  K  I  R  S  L  R  Q  N  *  C  P  P  V  P  I  D  P  R  *  Q  G  V  E  P  L  Q  P  *  Q  L  P  C  S  L  Q  V  T  H  S  R  G  M  H  Q  R  S  F  H  L  *  S  S  I  V  Q  T  C  E  L  Q  S  W  D  Q  R  P  Q  R  A  L  F  H  P  H  Y  H </second_frame>
            <third_frame>   I  R  P  K  T  L  F  A  W  F  D  F   : L  N  R  C  S  Y  F  H  K  P  H  C  F  *  H  S  L  F  T  E  M  S  H  F  K  V  *  I  Y  M  P  Y  R  V  I  F  C  N  *  T  Q  M  K  K  H  H  I  *  T  N  Q  T  A  M  K  N  V  K  Q  L  Q  H  C  K  *  G  R  N  F  K  E  L  F  *  N  P  K  *  V  *  K  L  D  L  *  G  K  T  D  A  L  L  C  Q  L  I  Q  G  S  R  G  L  N  L  C  N  L  S  N  C  L  V  L  F  R  *  P  T  L  E  E  C  T  N  D  L  S  I  F  D  P  V  L  S  K  L  V  S  C  R  V  G  I  S  V  P  K  E  H  C  F  T  H  I  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLm0018D02.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="76586" e_stop="76856"/>
            <exon e_start="77163" e_stop="77752"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76586" e_stop="76856" e_length="271"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.987">
            <gDNA_intron_boundary i_start="76857" i_stop="77162" i_length="306"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="77163" e_stop="77752" e_length="590"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76586" stop="76856"/>
              <exon start="77163" stop="77752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703480" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTGTTTCACATAACGAGCGACTTGAAGTTGATCGCATCCCAGCCCTTGTAGAATTGTGCATTCAGGCTGGTGTGGACTTACCTGAGTACCCAACCCGAAGAAGGAAGTTCCCCATTTACCGGGTTGCTGGAAAACTCATAGATTTTGAGAAGAGGTTTCCCAAGGATGATTTGTTCGGGAAGGACGTAGAAACTTTTAGGTCTAGGGAAACTATTAAGAAGCACATCGGAGATGGAAATTATTTGAATTTACCCTACGATGACATAAAAG : GATTCGCTATGCGAGGAATGGAAGCTTGGGAGACTATGCGTACTGGAGCCATACAGCTCATGAAAACTTATGGCGTTCAAACATGTGGATATTGTCCTGAGTTGCAAGTCGGGCCAAAGGGGCATAGGGTTAGGCAATGTCAAGCCTTCAAGCACCAGATGAGGGATGGACAACATGCTTGGCAAGAGGCAACAATAGATGATCTTCTCTCCACTGTATATGTTTGGCATGTCCAAAACCCGCATGCTGGTGACGTTTTGGTTGATTCTATGAAAAGGTATTATGGAAAGTTACCTGCAGTCGTTGAACTGTTTAGTCAAGTTGGAGCACAGGTCGGAGATGATTACTATCACATGATGAGAGATGATGTTGTAGTTCCTGGACGAGATGAAGAAAAGTTAGTTGTATAAAGCTCTGAAATGCTGCCAACATATTGGCAGAGTAGAATCAACATTAGACCGAAGACATTGTTTGCTTGGTTTGATTTCTGCTAGTGAGGATAAACCCAAGACTGTATCGTTGCCAGAGCTCGTTTGTTGTTAGGGTAAATCTATGCAGTTTCTGGCAATTGAAACTTCAACTTCATGTTG</gDNA_template>
            <first_frame> A  V  S  H  N  E  R  L  E  V  D  R  I  P  A  L  V  E  L  C  I  Q  A  G  V  D  L  P  E  Y  P  T  R  R  R  K  F  P  I  Y  R  V  A  G  K  L  I  D  F  E  K  R  F  P  K  D  D  L  F  G  K  D  V  E  T  F  R  S  R  E  T  I  K  K  H  I  G  D  G  N  Y  L  N  L  P  Y  D  D  I  K   : G  F  A  M  R  G  M  E  A  W  E  T  M  R  T  G  A  I  Q  L  M  K  T  Y  G  V  Q  T  C  G  Y  C  P  E  L  Q  V  G  P  K  G  H  R  V  R  Q  C  Q  A  F  K  H  Q  M  R  D  G  Q  H  A  W  Q  E  A  T  I  D  D  L  L  S  T  V  Y  V  W  H  V  Q  N  P  H  A  G  D  V  L  V  D  S  M  K  R  Y  Y  G  K  L  P  A  V  V  E  L  F  S  Q  V  G  A  Q  V  G  D  D  Y  Y  H  M  M  R  D  D  V  V  V  P  G  R  D  E  E  K  L  V  V  *  S  S  E  M  L  P  T  Y  W  Q  S  R  I  N  I  R  P  K  T  L  F  A  W  F  D  F  C  *  *  G  *  T  Q  D  C  I  V  A  R  A  R  L  L  L  G  *  I  Y  A  V  S  G  N  *  N  F  N  F  M  L </first_frame>
            <second_frame>  L  F  H  I  T  S  D  L  K  L  I  A  S  Q  P  L  *  N  C  A  F  R  L  V  W  T  Y  L  S  T  Q  P  E  E  G  S  S  P  F  T  G  L  L  E  N  S  *  I  L  R  R  G  F  P  R  M  I  C  S  G  R  T  *  K  L  L  G  L  G  K  L  L  R  S  T  S  E  M  E  I  I  *  I  Y  P  T  M  T  *  K  :  D  S  L  C  E  E  W  K  L  G  R  L  C  V  L  E  P  Y  S  S  *  K  L  M  A  F  K  H  V  D  I  V  L  S  C  K  S  G  Q  R  G  I  G  L  G  N  V  K  P  S  S  T  R  *  G  M  D  N  M  L  G  K  R  Q  Q  *  M  I  F  S  P  L  Y  M  F  G  M  S  K  T  R  M  L  V  T  F  W  L  I  L  *  K  G  I  M  E  S  Y  L  Q  S  L  N  C  L  V  K  L  E  H  R  S  E  M  I  T  I  T  *  *  E  M  M  L  *  F  L  D  E  M  K  K  S  *  L  Y  K  A  L  K  C  C  Q  H  I  G  R  V  E  S  T  L  D  R  R  H  C  L  L  G  L  I  S  A  S  E  D  K  P  K  T  V  S  L  P  E  L  V  C  C  *  G  K  S  M  Q  F  L  A  I  E  T  S  T  S  C   </second_frame>
            <third_frame>   C  F  T  *  R  A  T  *  S  *  S  H  P  S  P  C  R  I  V  H  S  G  W  C  G  L  T  *  V  P  N  P  K  K  E  V  P  H  L  P  G  C  W  K  T  H  R  F  *  E  E  V  S  Q  G  *  F  V  R  E  G  R  R  N  F  *  V  *  G  N  Y  *  E  A  H  R  R  W  K  L  F  E  F  T  L  R  *  H  K  R :   I  R  Y  A  R  N  G  S  L  G  D  Y  A  Y  W  S  H  T  A  H  E  N  L  W  R  S  N  M  W  I  L  S  *  V  A  S  R  A  K  G  A  *  G  *  A  M  S  S  L  Q  A  P  D  E  G  W  T  T  C  L  A  R  G  N  N  R  *  S  S  L  H  C  I  C  L  A  C  P  K  P  A  C  W  *  R  F  G  *  F  Y  E  K  V  L  W  K  V  T  C  S  R  *  T  V  *  S  S  W  S  T  G  R  R  *  L  L  S  H  D  E  R  *  C  C  S  S  W  T  R  *  R  K  V  S  C  I  K  L  *  N  A  A  N  I  L  A  E  *  N  Q  H  *  T  E  D  I  V  C  L  V  *  F  L  L  V  R  I  N  P  R  L  Y  R  C  Q  S  S  F  V  V  R  V  N  L  C  S  F  W  Q  L  K  L  Q  L  H  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0018D02.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76586" stop="76856"/>
                    <exon start="77163" stop="77572"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>678</number_coding_nucleotides>
                  <number_encoded_amino_acids>226</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AVSHNERLEVDRIPALVELCIQAGVDLPEYPTRRRKFPIYRVAGKLIDFEKRFPKDDLFGKDVETFRSRETIKKHIGDGNYLNLPYDDIKGFAMRGMEAWETMRTGAIQLMKTYGVQTCGYCPELQVGPKGHRVRQCQAFKHQMRDGQHAWQEATIDDLLSTVYVWHVQNPHAGDVLVDSMKRYYGKLPAVVELFSQVGAQVGDDYYHMMRDDVVVPGRDEEKLVV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="83017" PGL_stop="77901"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83017" e_stop="82923"/>
            <exon e_start="81650" e_stop="81579"/>
            <exon e_start="81040" e_stop="80989"/>
            <exon e_start="80624" e_stop="80544"/>
            <exon e_start="80413" e_stop="80295"/>
            <exon e_start="80208" e_stop="79989"/>
            <exon e_start="79851" e_stop="79733"/>
            <exon e_start="79648" e_stop="79523"/>
            <exon e_start="79088" e_stop="78948"/>
            <exon e_start="78497" e_stop="77901"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.698" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.864" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.689" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="83017" e_stop="82923" e_length="95"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="1.000">
            <gDNA_intron_boundary i_start="82922" i_stop="81651" i_length="1272"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81650" e_stop="81579" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="81578" i_stop="81041" i_length="538"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="81040" e_stop="80989" e_length="52"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.698">
            <gDNA_intron_boundary i_start="80988" i_stop="80625" i_length="364"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="80624" e_stop="80544" e_length="81"/>
          </exon>
          <intron i_serial="4" don_prob="0.978" acc_prob="0.992">
            <gDNA_intron_boundary i_start="80543" i_stop="80414" i_length="130"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="80413" e_stop="80295" e_length="119"/>
          </exon>
          <intron i_serial="5" don_prob="0.864" acc_prob="0.999">
            <gDNA_intron_boundary i_start="80294" i_stop="80209" i_length="86"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="80208" e_stop="79989" e_length="220"/>
          </exon>
          <intron i_serial="6" don_prob="0.689" acc_prob="0.998">
            <gDNA_intron_boundary i_start="79988" i_stop="79852" i_length="137"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="79851" e_stop="79733" e_length="119"/>
          </exon>
          <intron i_serial="7" don_prob="0.976" acc_prob="0.997">
            <gDNA_intron_boundary i_start="79732" i_stop="79649" i_length="84"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="79648" e_stop="79523" e_length="126"/>
          </exon>
          <intron i_serial="8" don_prob="0.974" acc_prob="0.993">
            <gDNA_intron_boundary i_start="79522" i_stop="79089" i_length="434"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="79088" e_stop="78948" e_length="141"/>
          </exon>
          <intron i_serial="9" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="78947" i_stop="78498" i_length="450"/>
          </intron>
          <exon e_serial="10" e_score="0.998">
            <gDNA_exon_boundary e_start="78497" e_stop="77901" e_length="597"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83017" stop="82923"/>
              <exon start="81650" stop="81579"/>
              <exon start="81040" stop="80989"/>
              <exon start="80624" stop="80544"/>
              <exon start="80413" stop="80295"/>
              <exon start="80208" stop="80105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83015" stop="82923"/>
              <exon start="81650" stop="81579"/>
              <exon start="81040" stop="80989"/>
              <exon start="80624" stop="80544"/>
              <exon start="80413" stop="80295"/>
              <exon start="80208" stop="79989"/>
              <exon start="79851" stop="79748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83015" stop="82923"/>
              <exon start="81650" stop="81579"/>
              <exon start="81040" stop="80989"/>
              <exon start="80624" stop="80544"/>
              <exon start="80413" stop="80295"/>
              <exon start="80208" stop="79989"/>
              <exon start="79851" stop="79840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83014" stop="82923"/>
              <exon start="81650" stop="81579"/>
              <exon start="81040" stop="80989"/>
              <exon start="80624" stop="80544"/>
              <exon start="80413" stop="80295"/>
              <exon start="80208" stop="80105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83013" stop="82923"/>
              <exon start="81650" stop="81579"/>
              <exon start="81040" stop="80989"/>
              <exon start="80624" stop="80544"/>
              <exon start="80413" stop="80295"/>
              <exon start="80208" stop="79989"/>
              <exon start="79851" stop="79733"/>
              <exon start="79648" stop="79602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83011" stop="82923"/>
              <exon start="81650" stop="81579"/>
              <exon start="81040" stop="80989"/>
              <exon start="80624" stop="80544"/>
              <exon start="80413" stop="80295"/>
              <exon start="80208" stop="80072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83011" stop="82923"/>
              <exon start="81650" stop="81579"/>
              <exon start="81040" stop="80989"/>
              <exon start="80624" stop="80544"/>
              <exon start="80413" stop="80295"/>
              <exon start="80208" stop="80095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83011" stop="82923"/>
              <exon start="81650" stop="81579"/>
              <exon start="81040" stop="80989"/>
              <exon start="80624" stop="80544"/>
              <exon start="80413" stop="80295"/>
              <exon start="80208" stop="80119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83007" stop="82923"/>
              <exon start="81650" stop="81579"/>
              <exon start="81040" stop="80989"/>
              <exon start="80624" stop="80544"/>
              <exon start="80413" stop="80329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83004" stop="82923"/>
              <exon start="81650" stop="81579"/>
              <exon start="81040" stop="80989"/>
              <exon start="80624" stop="80544"/>
              <exon start="80413" stop="80295"/>
              <exon start="80208" stop="79989"/>
              <exon start="79851" stop="79733"/>
              <exon start="79648" stop="79548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81623" stop="81579"/>
              <exon start="81040" stop="80989"/>
              <exon start="80624" stop="80544"/>
              <exon start="80413" stop="80295"/>
              <exon start="80208" stop="79989"/>
              <exon start="79851" stop="79733"/>
              <exon start="79648" stop="79561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80580" stop="80544"/>
              <exon start="80413" stop="80295"/>
              <exon start="80208" stop="79989"/>
              <exon start="79851" stop="79733"/>
              <exon start="79648" stop="79523"/>
              <exon start="79088" stop="78948"/>
              <exon start="78497" stop="78437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80572" stop="80544"/>
              <exon start="80413" stop="80295"/>
              <exon start="80208" stop="79989"/>
              <exon start="79851" stop="79733"/>
              <exon start="79648" stop="79582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80295" stop="80295"/>
              <exon start="80208" stop="79989"/>
              <exon start="79851" stop="79733"/>
              <exon start="79648" stop="79629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80174" stop="79989"/>
              <exon start="79851" stop="79733"/>
              <exon start="79648" stop="79523"/>
              <exon start="79088" stop="78948"/>
              <exon start="78497" stop="78403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80110" stop="79989"/>
              <exon start="79851" stop="79733"/>
              <exon start="79648" stop="79523"/>
              <exon start="79088" stop="78966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80087" stop="79989"/>
              <exon start="79851" stop="79733"/>
              <exon start="79648" stop="79523"/>
              <exon start="79088" stop="78948"/>
              <exon start="78497" stop="78212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79835" stop="79733"/>
              <exon start="79648" stop="79523"/>
              <exon start="79088" stop="78948"/>
              <exon start="78497" stop="78303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79831" stop="79733"/>
              <exon start="79648" stop="79523"/>
              <exon start="79088" stop="78948"/>
              <exon start="78497" stop="78315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79748" stop="79733"/>
              <exon start="79648" stop="79523"/>
              <exon start="79088" stop="78948"/>
              <exon start="78497" stop="78122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79623" stop="79523"/>
              <exon start="79088" stop="78948"/>
              <exon start="78497" stop="77942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79553" stop="79523"/>
              <exon start="79088" stop="78948"/>
              <exon start="78497" stop="77924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79008" stop="78948"/>
              <exon start="78497" stop="77917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79008" stop="78948"/>
              <exon start="78497" stop="77917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79000" stop="78948"/>
              <exon start="78497" stop="77929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203775" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78999" stop="78948"/>
              <exon start="78497" stop="78032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78979" stop="78948"/>
              <exon start="78497" stop="77952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78979" stop="78948"/>
              <exon start="78497" stop="77952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78146" stop="77901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78146" stop="77905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223629" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCACCAAAAAAGCTCTAACTATTTTCACTGTGAAAGTTCATCAATGGCGGAGAAATCATTCAAGTATGTGATCGTCGGTGGCGGTGTTTCTGCT : GGGTATGCTGCTAGAGAATTTGCCAAACAGGGAGTTAAGCCTGGGGAACTGGCTATTATTTCCAAAGAGGCA : GTGGCTCCTTATGAACGTCCTGCACTTAGCAAGGCATACCTTTTTCCTGAAG : GAGCTGCTAGACTCCCAGGATTTCATGTGTGTGTTGGAAGTGGAGGAGAGAGACAGCTTCCTGAGTGGTATGCAGAGAAAG : GCATTTCGTTGATCCTGAGTACTGAAATAGTGAAAGCAGATCTTGCTTCAAAGACTCTTGTTAGTGCAGCTGGGGAATCTTTTAAATATCAAACACTTGTTATTGCAACAGGATCCACC : GTTTTGAAGTTGTCAGATTTTGGTGTACAAGGTGCTGATTCCAAGAATATCTTTTACTTGAGAGAAATCGATGATGCTGATCAACTTGTGGAAGCATTAAAAGCTAAGAAAAATGGTAAAGCTGTTGTTGTTGGGGGAGGGTACATCGGTCTCGAGCTTAGTGCTGTACTGAGACTGAACAACATTGAAGTCAATATGGTTTACCCAGAACCATGGTGCA : TGCCTCGGCTTTTCACAGAGGGCATAGCTGCGTTCTATGAAGGTTATTATAAAAACAAGGGAGTCAATATTATCAAGGGTACAGTGGCTGTTGGGTTTGATACCCATCCAAATGGAGAG : GTGAAGGAAGTCAAACTCAAAGATGGCAGAGTTTTGGAAGCTGACATAGTAGTCGTAGGAGTCGGAGCAAGACCACTCACAACTCTATTCAAAGGGCAAGTTGAAGAGGAGAAGGGTGGAATTAAG : ACAGATGCGTTCTTCAAAACAAGTGTACCTGATGTATATGCTGTGGGTGATGTTGCCACTTTTCCTTTGAAAATGTACAATGAGATTAGAAGAGTTGAACATGTTGATCATTCTCGCAAATCTGCTGAGCAGGCTGTCAAG : GCAATATTTGCCAGTGAGCAAGGGAAGTCTGTCGATGAATATGACTACCTTCCATACTTCTATTCCCGCGCCTTCGATTTGTCTTGGCAATTCTACGGTGATAATGTGGGTGAAACAGTGCTCTTTGGGGACGCTGATCCCAACTCTGCAACTCACAAGTTTGGACAATACTGGATCAAAGATGGAAAGATCGTTGGTGCATTCCTCGAGAGTGGGTCACCTGAAGAGAACAAGGCAATTGCTAAGGTTGCAAAGGTTCAACCCCCTGCTACCTTGGATCAATTGGCACAGGAGGGCATCAGTTTTGCCTCAAAGATCTAATTTTTATACCTACTTTGGATTTTAAAACAGCTCTTTGAAGTTTCTGCCTTATTTACAATGTTGTAATTGTTTGACATTTTTCATGGCTGTTTGATTGGTTTAAATATGATGTTTCTTCATCTGAGTTTAGTTGCAGAAGATCACCCTGTAAGGCATATATATTCATACCTTAAAGTGTGACATCTCTGTAAATAATGAATGTTAGAAGCAATGTGGTTTGTGAAAATATGAGCATCTATTTACTTGGATTAGCGCACACTTTGGTTATGCACATTT</gDNA_template>
            <first_frame> F  T  K  K  A  L  T  I  F  T  V  K  V  H  Q  W  R  R  N  H  S  S  M  *  S  S  V  A  V  F  L  L :   G  M  L  L  E  N  L  P  N  R  E  L  S  L  G  N  W  L  L  F  P  K  R  Q :   W  L  L  M  N  V  L  H  L  A  R  H  T  F  F  L  K  :  E  L  L  D  S  Q  D  F  M  C  V  L  E  V  E  E  R  D  S  F  L  S  G  M  Q  R  K  :  A  F  R  *  S  *  V  L  K  *  *  K  Q  I  L  L  Q  R  L  L  L  V  Q  L  G  N  L  L  N  I  K  H  L  L  L  Q  Q  D  P  P :   F  *  S  C  Q  I  L  V  Y  K  V  L  I  P  R  I  S  F  T  *  E  K  S  M  M  L  I  N  L  W  K  H  *  K  L  R  K  M  V  K  L  L  L  L  G  E  G  T  S  V  S  S  L  V  L  Y  *  D  *  T  T  L  K  S  I  W  F  T  Q  N  H  G  A  :  C  L  G  F  S  Q  R  A  *  L  R  S  M  K  V  I  I  K  T  R  E  S  I  L  S  R  V  Q  W  L  L  G  L  I  P  I  Q  M  E  R :   *  R  K  S  N  S  K  M  A  E  F  W  K  L  T  *  *  S  *  E  S  E  Q  D  H  S  Q  L  Y  S  K  G  K  L  K  R  R  R  V  E  L  R :   Q  M  R  S  S  K  Q  V  Y  L  M  Y  M  L  W  V  M  L  P  L  F  L  *  K  C  T  M  R  L  E  E  L  N  M  L  I  I  L  A  N  L  L  S  R  L  S  R :   Q  Y  L  P  V  S  K  G  S  L  S  M  N  M  T  T  F  H  T  S  I  P  A  P  S  I  C  L  G  N  S  T  V  I  M  W  V  K  Q  C  S  L  G  T  L  I  P  T  L  Q  L  T  S  L  D  N  T  G  S  K  M  E  R  S  L  V  H  S  S  R  V  G  H  L  K  R  T  R  Q  L  L  R  L  Q  R  F  N  P  L  L  P  W  I  N  W  H  R  R  A  S  V  L  P  Q  R  S  N  F  Y  T  Y  F  G  F  *  N  S  S  L  K  F  L  P  Y  L  Q  C  C  N  C  L  T  F  F  M  A  V  *  L  V  *  I  *  C  F  F  I  *  V  *  L  Q  K  I  T  L  *  G  I  Y  I  H  T  L  K  C  D  I  S  V  N  N  E  C  *  K  Q  C  G  L  *  K  Y  E  H  L  F  T  W  I  S  A  H  F  G  Y  A  H   </first_frame>
            <second_frame>  S  P  K  K  L  *  L  F  S  L  *  K  F  I  N  G  G  E  I  I  Q  V  C  D  R  R  W  R  C  F  C   : W  V  C  C  *  R  I  C  Q  T  G  S  *  A  W  G  T  G  Y  Y  F  Q  R  G   : S  G  S  L  *  T  S  C  T  *  Q  G  I  P  F  S  *  R :   S  C  *  T  P  R  I  S  C  V  C  W  K  W  R  R  E  T  A  S  *  V  V  C  R  E  R :   H  F  V  D  P  E  Y  *  N  S  E  S  R  S  C  F  K  D  S  C  *  C  S  W  G  I  F  *  I  S  N  T  C  Y  C  N  R  I  H   : R  F  E  V  V  R  F  W  C  T  R  C  *  F  Q  E  Y  L  L  L  E  R  N  R  *  C  *  S  T  C  G  S  I  K  S  *  E  K  W  *  S  C  C  C  W  G  R  V  H  R  S  R  A  *  C  C  T  E  T  E  Q  H  *  S  Q  Y  G  L  P  R  T  M  V  H :   A  S  A  F  H  R  G  H  S  C  V  L  *  R  L  L  *  K  Q  G  S  Q  Y  Y  Q  G  Y  S  G  C  W  V  *  Y  P  S  K  W  R   : G  E  G  S  Q  T  Q  R  W  Q  S  F  G  S  *  H  S  S  R  R  S  R  S  K  T  T  H  N  S  I  Q  R  A  S  *  R  G  E  G  W  N  *   : D  R  C  V  L  Q  N  K  C  T  *  C  I  C  C  G  *  C  C  H  F  S  F  E  N  V  Q  *  D  *  K  S  *  T  C  *  S  F  S  Q  I  C  *  A  G  C  Q   : G  N  I  C  Q  *  A  R  E  V  C  R  *  I  *  L  P  S  I  L  L  F  P  R  L  R  F  V  L  A  I  L  R  *  *  C  G  *  N  S  A  L  W  G  R  *  S  Q  L  C  N  S  Q  V  W  T  I  L  D  Q  R  W  K  D  R  W  C  I  P  R  E  W  V  T  *  R  E  Q  G  N  C  *  G  C  K  G  S  T  P  C  Y  L  G  S  I  G  T  G  G  H  Q  F  C  L  K  D  L  I  F  I  P  T  L  D  F  K  T  A  L  *  S  F  C  L  I  Y  N  V  V  I  V  *  H  F  S  W  L  F  D  W  F  K  Y  D  V  S  S  S  E  F  S  C  R  R  S  P  C  K  A  Y  I  F  I  P  *  S  V  T  S  L  *  I  M  N  V  R  S  N  V  V  C  E  N  M  S  I  Y  L  L  G  L  A  H  T  L  V  M  H  I  </second_frame>
            <third_frame>   H  Q  K  S  S  N  Y  F  H  C  E  S  S  S  M  A  E  K  S  F  K  Y  V  I  V  G  G  G  V  S  A  :  G  Y  A  A  R  E  F  A  K  Q  G  V  K  P  G  E  L  A  I  I  S  K  E  A  :  V  A  P  Y  E  R  P  A  L  S  K  A  Y  L  F  P  E   : G  A  A  R  L  P  G  F  H  V  C  V  G  S  G  G  E  R  Q  L  P  E  W  Y  A  E  K   : G  I  S  L  I  L  S  T  E  I  V  K  A  D  L  A  S  K  T  L  V  S  A  A  G  E  S  F  K  Y  Q  T  L  V  I  A  T  G  S  T  :  V  L  K  L  S  D  F  G  V  Q  G  A  D  S  K  N  I  F  Y  L  R  E  I  D  D  A  D  Q  L  V  E  A  L  K  A  K  K  N  G  K  A  V  V  V  G  G  G  Y  I  G  L  E  L  S  A  V  L  R  L  N  N  I  E  V  N  M  V  Y  P  E  P  W  C   : M  P  R  L  F  T  E  G  I  A  A  F  Y  E  G  Y  Y  K  N  K  G  V  N  I  I  K  G  T  V  A  V  G  F  D  T  H  P  N  G  E  :  V  K  E  V  K  L  K  D  G  R  V  L  E  A  D  I  V  V  V  G  V  G  A  R  P  L  T  T  L  F  K  G  Q  V  E  E  E  K  G  G  I  K  :  T  D  A  F  F  K  T  S  V  P  D  V  Y  A  V  G  D  V  A  T  F  P  L  K  M  Y  N  E  I  R  R  V  E  H  V  D  H  S  R  K  S  A  E  Q  A  V  K  :  A  I  F  A  S  E  Q  G  K  S  V  D  E  Y  D  Y  L  P  Y  F  Y  S  R  A  F  D  L  S  W  Q  F  Y  G  D  N  V  G  E  T  V  L  F  G  D  A  D  P  N  S  A  T  H  K  F  G  Q  Y  W  I  K  D  G  K  I  V  G  A  F  L  E  S  G  S  P  E  E  N  K  A  I  A  K  V  A  K  V  Q  P  P  A  T  L  D  Q  L  A  Q  E  G  I  S  F  A  S  K  I  *  F  L  Y  L  L  W  I  L  K  Q  L  F  E  V  S  A  L  F  T  M  L  *  L  F  D  I  F  H  G  C  L  I  G  L  N  M  M  F  L  H  L  S  L  V  A  E  D  H  P  V  R  H  I  Y  S  Y  L  K  V  *  H  L  C  K  *  *  M  L  E  A  M  W  F  V  K  I  *  A  S  I  Y  L  D  *  R  T  L  W  L  C  T  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0018D02.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83015" stop="82923"/>
                    <exon start="81650" stop="81579"/>
                    <exon start="81040" stop="80989"/>
                    <exon start="80624" stop="80544"/>
                    <exon start="80413" stop="80295"/>
                    <exon start="80208" stop="79989"/>
                    <exon start="79851" stop="79733"/>
                    <exon start="79648" stop="79523"/>
                    <exon start="79088" stop="78948"/>
                    <exon start="78497" stop="78177"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1341</number_coding_nucleotides>
                  <number_encoded_amino_acids>447</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HQKSSNYFHCESSSMAEKSFKYVIVGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGAARLPGFHVCVGSGGERQLPEWYAEKGISLILSTEIVKADLASKTLVSAAGESFKYQTLVIATGSTVLKLSDFGVQGADSKNIFYLREIDDADQLVEALKAKKNGKAVVVGGGYIGLELSAVLRLNNIEVNMVYPEPWCMPRLFTEGIAAFYEGYYKNKGVNIIKGTVAVGFDTHPNGEVKEVKLKDGRVLEADIVVVGVGARPLTTLFKGQVEEEKGGIKTDAFFKTSVPDVYAVGDVATFPLKMYNEIRRVEHVDHSRKSAEQAVKAIFASEQGKSVDEYDYLPYFYSRAFDLSWQFYGDNVGETVLFGDADPNSATHKFGQYWIKDGKIVGAFLESGSPEENKAIAKVAKVQPPATLDQLAQEGISFASKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="95222" PGL_stop="95916"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95222" e_stop="95916"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="95222" e_stop="95916" e_length="695"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95222" stop="95916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327454" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTATTGAGGCAAAAGATGAGCTCGTGATGTTCCAACGTTCTGAAAGGTCAGGACAAGTACGAGAATCAGGCAGAAAACAGAAGCCTCCGTTGGTTAGAAAAGGACCTAATAAATTCTTAGAAAATGATATTAATCATCTTTTTGCATCCATCGATCTAAGATCATCAAAAAGTCTGGATTTGTCAGATCATGTGAAAAGAGATGCCTCAAAAAGGCCGATGAGGGGTGGTGGATCTCATTCTCCAGGAATTGGGTTTTCAGAGCCGGTCTCTCTTAAGCAGGCCTTACGGGGTTTATGCATTTCACAGGCGGCAGAAATGGCGGCAATGAAGCGGTTATCCAAGCAACCGGGTTCTCCAAGCATTACAGAAGCTGGAAGGATTACAAGCTCTTACAGGTTTGCAGATCCAAGCGAATCCGGTTTCATTCACACAGAAAGAGTAGTACAAGATGAAAGCACTTCAGGAACACTCGACAAAGTGCCCCATTACCGCCAAGAACTGTATGTTAAATCAGCAAACCATAGTCCCCATTCTTCTCCACGACTTGTCATTAAGCCATCCATCTCAATGCGCCAAAATAACAGAATAGTCCCGGCAGAAAGCACGTCTAACTCTTCTCAAAGGCCGCCTCAGTACATTGGAGATCCAAAGCTACAGTCACCAGGTCAAAGTACCCTTTGTTCTCCTAAAT</gDNA_template>
            <first_frame> N  Y  *  G  K  R  *  A  R  D  V  P  T  F  *  K  V  R  T  S  T  R  I  R  Q  K  T  E  A  S  V  G  *  K  R  T  *  *  I  L  R  K  *  Y  *  S  S  F  C  I  H  R  S  K  I  I  K  K  S  G  F  V  R  S  C  E  K  R  C  L  K  K  A  D  E  G  W  W  I  S  F  S  R  N  W  V  F  R  A  G  L  S  *  A  G  L  T  G  F  M  H  F  T  G  G  R  N  G  G  N  E  A  V  I  Q  A  T  G  F  S  K  H  Y  R  S  W  K  D  Y  K  L  L  Q  V  C  R  S  K  R  I  R  F  H  S  H  R  K  S  S  T  R  *  K  H  F  R  N  T  R  Q  S  A  P  L  P  P  R  T  V  C  *  I  S  K  P  *  S  P  F  F  S  T  T  C  H  *  A  I  H  L  N  A  P  K  *  Q  N  S  P  G  R  K  H  V  *  L  F  S  K  A  A  S  V  H  W  R  S  K  A  T  V  T  R  S  K  Y  P  L  F  S  *   </first_frame>
            <second_frame>  I  I  E  A  K  D  E  L  V  M  F  Q  R  S  E  R  S  G  Q  V  R  E  S  G  R  K  Q  K  P  P  L  V  R  K  G  P  N  K  F  L  E  N  D  I  N  H  L  F  A  S  I  D  L  R  S  S  K  S  L  D  L  S  D  H  V  K  R  D  A  S  K  R  P  M  R  G  G  G  S  H  S  P  G  I  G  F  S  E  P  V  S  L  K  Q  A  L  R  G  L  C  I  S  Q  A  A  E  M  A  A  M  K  R  L  S  K  Q  P  G  S  P  S  I  T  E  A  G  R  I  T  S  S  Y  R  F  A  D  P  S  E  S  G  F  I  H  T  E  R  V  V  Q  D  E  S  T  S  G  T  L  D  K  V  P  H  Y  R  Q  E  L  Y  V  K  S  A  N  H  S  P  H  S  S  P  R  L  V  I  K  P  S  I  S  M  R  Q  N  N  R  I  V  P  A  E  S  T  S  N  S  S  Q  R  P  P  Q  Y  I  G  D  P  K  L  Q  S  P  G  Q  S  T  L  C  S  P  K  </second_frame>
            <third_frame>   L  L  R  Q  K  M  S  S  *  C  S  N  V  L  K  G  Q  D  K  Y  E  N  Q  A  E  N  R  S  L  R  W  L  E  K  D  L  I  N  S  *  K  M  I  L  I  I  F  L  H  P  S  I  *  D  H  Q  K  V  W  I  C  Q  I  M  *  K  E  M  P  Q  K  G  R  *  G  V  V  D  L  I  L  Q  E  L  G  F  Q  S  R  S  L  L  S  R  P  Y  G  V  Y  A  F  H  R  R  Q  K  W  R  Q  *  S  G  Y  P  S  N  R  V  L  Q  A  L  Q  K  L  E  G  L  Q  A  L  T  G  L  Q  I  Q  A  N  P  V  S  F  T  Q  K  E  *  Y  K  M  K  A  L  Q  E  H  S  T  K  C  P  I  T  A  K  N  C  M  L  N  Q  Q  T  I  V  P  I  L  L  H  D  L  S  L  S  H  P  S  Q  C  A  K  I  T  E  *  S  R  Q  K  A  R  L  T  L  L  K  G  R  L  S  T  L  E  I  Q  S  Y  S  H  Q  V  K  V  P  F  V  L  L  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0018D02.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95223" stop="95915"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>693</number_coding_nucleotides>
                  <number_encoded_amino_acids>231</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIEAKDELVMFQRSERSGQVRESGRKQKPPLVRKGPNKFLENDINHLFASIDLRSSKSLDLSDHVKRDASKRPMRGGGSHSPGIGFSEPVSLKQALRGLCISQAAEMAAMKRLSKQPGSPSITEAGRITSSYRFADPSESGFIHTERVVQDESTSGTLDKVPHYRQELYVKSANHSPHSSPRLVIKPSISMRQNNRIVPAESTSNSSQRPPQYIGDPKLQSPGQSTLCSPK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="97278" PGL_stop="99682"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97278" e_stop="97414"/>
            <exon e_start="98798" e_stop="99682"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.968" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="97278" e_stop="97414" e_length="137"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.968">
            <gDNA_intron_boundary i_start="97415" i_stop="98797" i_length="1383"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="98798" e_stop="99682" e_length="885"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97278" stop="97414"/>
              <exon start="98798" stop="99407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99104" stop="99682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366069" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTTTTCTACCTACGCTCTATGCACAGTTTACATCGCACAACTTATCATGCTTAGTTATGGAGTTTTGTCCAGGTGGTGATTTGCATGTCCTCAGGCAGAAGCAGCCTTGCAGAAACTTTCCTGAACCAGCAGCACG : GTTTTATGTGGCTGAAGTCCTCCTTGCTCTGGAGTATCTGCATATGCTTGGAGTTGTATATCGGGATCTGAAACCCGAGAACATACTGGTCCGGGAAGATGGTCACATCATGCTTACAGATTTTGACCTCTCACTCAGATGTTCAGTTAATCCCACTCTTTTAAAATCATCTTCACTGGGGGTTGAAGCTCCAAGGATTTCTGGTCCATGCGCGGGCTCTAATTGTATTGATCCATTTTGTTCTGGTCCGTCATGTCAAGTTTCTTGCTTTAGCCCCAGAATTTTACCTGCCACAGCACGAGCAAGAAAGCTGAAAGCAGAAGCTGCAGCCTTTCACAGATCATTGCCTCAGCTTGTGGTAGAGCCAACAGAAGCGCGATCCAACTCATTTGTTGGTACACATGAATATTTGGCTCCCGAGATCATTAAAGGTGAGGGTCATGGGAGTGCTGTTGATTGGTGGACTTTAGGTGTTTTTCTTTACGAGCTTCTATATGGGAAGACACCATTTAAAGGCGCTGGAAATGAAGAAACTTTGGCCAATGTGGTCATGCAGAACCTCAGATTTCCCGATAGCCCCCTTGTTAGTCTTCAGGCAAGGGATCTAATCAGAGGACTTCTCGTGAAGGAGCCTGAGAATCGATTAGGAACAGAAACAGGAGCTGCTGAGATTAAACGACACCCCTTCTTCGATGGTATGAACTGGGCACTGATAAGGTGTGCCATTCCACCAGAAATACCTGATCTCTGTGACATTGGATTTACAAAACTAGCTTATCAGGAGAAGAACAAAATGTTTTTAGAGTATAGTTCCAAAGAGAATTTAGAATTTGAATTGTTCTAGTAAATCTCTATACCACTCTGGTTATGATGTATCCTCTACAT</gDNA_template>
            <first_frame> P  F  L  P  T  L  Y  A  Q  F  T  S  H  N  L  S  C  L  V  M  E  F  C  P  G  G  D  L  H  V  L  R  Q  K  Q  P  C  R  N  F  P  E  P  A  A  R :   F  Y  V  A  E  V  L  L  A  L  E  Y  L  H  M  L  G  V  V  Y  R  D  L  K  P  E  N  I  L  V  R  E  D  G  H  I  M  L  T  D  F  D  L  S  L  R  C  S  V  N  P  T  L  L  K  S  S  S  L  G  V  E  A  P  R  I  S  G  P  C  A  G  S  N  C  I  D  P  F  C  S  G  P  S  C  Q  V  S  C  F  S  P  R  I  L  P  A  T  A  R  A  R  K  L  K  A  E  A  A  A  F  H  R  S  L  P  Q  L  V  V  E  P  T  E  A  R  S  N  S  F  V  G  T  H  E  Y  L  A  P  E  I  I  K  G  E  G  H  G  S  A  V  D  W  W  T  L  G  V  F  L  Y  E  L  L  Y  G  K  T  P  F  K  G  A  G  N  E  E  T  L  A  N  V  V  M  Q  N  L  R  F  P  D  S  P  L  V  S  L  Q  A  R  D  L  I  R  G  L  L  V  K  E  P  E  N  R  L  G  T  E  T  G  A  A  E  I  K  R  H  P  F  F  D  G  M  N  W  A  L  I  R  C  A  I  P  P  E  I  P  D  L  C  D  I  G  F  T  K  L  A  Y  Q  E  K  N  K  M  F  L  E  Y  S  S  K  E  N  L  E  F  E  L  F  *  *  I  S  I  P  L  W  L  *  C  I  L  Y   </first_frame>
            <second_frame>  L  F  Y  L  R  S  M  H  S  L  H  R  T  T  Y  H  A  *  L  W  S  F  V  Q  V  V  I  C  M  S  S  G  R  S  S  L  A  E  T  F  L  N  Q  Q  H   : G  F  M  W  L  K  S  S  L  L  W  S  I  C  I  C  L  E  L  Y  I  G  I  *  N  P  R  T  Y  W  S  G  K  M  V  T  S  C  L  Q  I  L  T  S  H  S  D  V  Q  L  I  P  L  F  *  N  H  L  H  W  G  L  K  L  Q  G  F  L  V  H  A  R  A  L  I  V  L  I  H  F  V  L  V  R  H  V  K  F  L  A  L  A  P  E  F  Y  L  P  Q  H  E  Q  E  S  *  K  Q  K  L  Q  P  F  T  D  H  C  L  S  L  W  *  S  Q  Q  K  R  D  P  T  H  L  L  V  H  M  N  I  W  L  P  R  S  L  K  V  R  V  M  G  V  L  L  I  G  G  L  *  V  F  F  F  T  S  F  Y  M  G  R  H  H  L  K  A  L  E  M  K  K  L  W  P  M  W  S  C  R  T  S  D  F  P  I  A  P  L  L  V  F  R  Q  G  I  *  S  E  D  F  S  *  R  S  L  R  I  D  *  E  Q  K  Q  E  L  L  R  L  N  D  T  P  S  S  M  V  *  T  G  H  *  *  G  V  P  F  H  Q  K  Y  L  I  S  V  T  L  D  L  Q  N  *  L  I  R  R  R  T  K  C  F  *  S  I  V  P  K  R  I  *  N  L  N  C  S  S  K  S  L  Y  H  S  G  Y  D  V  S  S  T  </second_frame>
            <third_frame>   F  S  T  Y  A  L  C  T  V  Y  I  A  Q  L  I  M  L  S  Y  G  V  L  S  R  W  *  F  A  C  P  Q  A  E  A  A  L  Q  K  L  S  *  T  S  S  T  :  V  L  C  G  *  S  P  P  C  S  G  V  S  A  Y  A  W  S  C  I  S  G  S  E  T  R  E  H  T  G  P  G  R  W  S  H  H  A  Y  R  F  *  P  L  T  Q  M  F  S  *  S  H  S  F  K  I  I  F  T  G  G  *  S  S  K  D  F  W  S  M  R  G  L  *  L  Y  *  S  I  L  F  W  S  V  M  S  S  F  L  L  *  P  Q  N  F  T  C  H  S  T  S  K  K  A  E  S  R  S  C  S  L  S  Q  I  I  A  S  A  C  G  R  A  N  R  S  A  I  Q  L  I  C  W  Y  T  *  I  F  G  S  R  D  H  *  R  *  G  S  W  E  C  C  *  L  V  D  F  R  C  F  S  L  R  A  S  I  W  E  D  T  I  *  R  R  W  K  *  R  N  F  G  Q  C  G  H  A  E  P  Q  I  S  R  *  P  P  C  *  S  S  G  K  G  S  N  Q  R  T  S  R  E  G  A  *  E  S  I  R  N  R  N  R  S  C  *  D  *  T  T  P  L  L  R  W  Y  E  L  G  T  D  K  V  C  H  S  T  R  N  T  *  S  L  *  H  W  I  Y  K  T  S  L  S  G  E  E  Q  N  V  F  R  V  *  F  Q  R  E  F  R  I  *  I  V  L  V  N  L  Y  T  T  L  V  M  M  Y  P  L  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0018D02.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97278" stop="97414"/>
                    <exon start="98798" stop="99641"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>978</number_coding_nucleotides>
                  <number_encoded_amino_acids>326</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PFLPTLYAQFTSHNLSCLVMEFCPGGDLHVLRQKQPCRNFPEPAARFYVAEVLLALEYLHMLGVVYRDLKPENILVREDGHIMLTDFDLSLRCSVNPTLLKSSSLGVEAPRISGPCAGSNCIDPFCSGPSCQVSCFSPRILPATARARKLKAEAAAFHRSLPQLVVEPTEARSNSFVGTHEYLAPEIIKGEGHGSAVDWWTLGVFLYELLYGKTPFKGAGNEETLANVVMQNLRFPDSPLVSLQARDLIRGLLVKEPENRLGTETGAAEIKRHPFFDGMNWALIRCAIPPEIPDLCDIGFTKLAYQEKNKMFLEYSSKENLEFELF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="106630" PGL_stop="105274"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106630" e_stop="106562"/>
            <exon e_start="106435" e_stop="106148"/>
            <exon e_start="105966" e_stop="105274"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.606" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.600" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="106630" e_stop="106562" e_length="69"/>
          </exon>
          <intron i_serial="1" don_prob="0.606" acc_prob="0.930">
            <gDNA_intron_boundary i_start="106561" i_stop="106436" i_length="126"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="106435" e_stop="106148" e_length="288"/>
          </exon>
          <intron i_serial="2" don_prob="0.600" acc_prob="0.999">
            <gDNA_intron_boundary i_start="106147" i_stop="105967" i_length="181"/>
          </intron>
          <exon e_serial="3" e_score="0.926">
            <gDNA_exon_boundary e_start="105966" e_stop="105274" e_length="693"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106630" stop="106562"/>
              <exon start="106435" stop="106148"/>
              <exon start="105966" stop="105813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106356" stop="106148"/>
              <exon start="105966" stop="105484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106295" stop="106148"/>
              <exon start="105966" stop="105278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106289" stop="106148"/>
              <exon start="105966" stop="105274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695218" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105914" stop="105350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105913" stop="105347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105913" stop="105409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233211" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAATCACTTCTTGCTGCCTAAAGGAAGAATAATTCTTGTTACTCACCGGAGGGTCATTCTGTTGCAA : CAACCTTCCAATCTTATTGCACAAAAGAAGTTCAATCCGGCTAGAGATCCATGTGCAGTTTTATGGGATGTCCTCTTGGAAGACCTGGTGACAATGGAATTGACTCATGGAAAGAAAGATCTTCCAAATGGTCCCCCTTCACGGCTTATAATGTATCTGCAAAGTCGAACTATTGAGGCAAAGGACCAAGTTCGTGTCATAAAGTGTCATCGTGATTCGAATCAAGCGTTTGAAGTTTATTCTTCTATCGAGCAAGCACGGAGTGTTTATGGACCAAGTCAGTCAAAG : GCATTGGTTAAAACAAAAGTGACTAGACCATATTCTCCTTTTGCCGATGTGGTCAGCAGTGAAGGAATTTGCTCCTGGTCTCCTCAGCAGATGCCTACTTCGACTTTTGGAAGCAGTGAGCAGTGAAGAACTAAACAATGATGGAAGCAAAATGAAGGATGTTATGACCAACTAATATCATTCCAATAAAGCTATCGCTTTCCATTGCTAAAATGGCAGAACCCTCACAAGGTACAAGTGGCAAGAATCAGGACTAGTCACTTTTCGTCTTCAAAATATAGAAATGCATGTATATATGATATATCTGTGTCTCAGCCTATCAGTAGGTGTGCTAGAAATATTAGGACCATATAATACCCCGGAAACTTGTACAGCTCTTCTCGTCCCTTTTAAACCTATACCTATACTATAAGTAGATGGTGGCCTGATATCCCATAATTCTGGGGAAAACCCTGTAAACTAAGCTTCACCATGCTCCATTGCTTAGAATGTGTATAGCTTTTGATTTAACTTGGATGCCTCCATTAATCTGAATATTTCCTTAGATATATATATATATATACGTAGTCTATGTACCAAGTCGAAACTGAAATTCTCAAAAAAGGGAAGTTTTTGTAGCAATTCCCTTGATGTTGTTGACTAATTTCTCAGCAGTTGTAAGTGAATTCCATTTCAAGTGGATCGTTTTTGTTT</gDNA_template>
            <first_frame> E  N  H  F  L  L  P  K  G  R  I  I  L  V  T  H  R  R  V  I  L  L  Q  :  Q  P  S  N  L  I  A  Q  K  K  F  N  P  A  R  D  P  C  A  V  L  W  D  V  L  L  E  D  L  V  T  M  E  L  T  H  G  K  K  D  L  P  N  G  P  P  S  R  L  I  M  Y  L  Q  S  R  T  I  E  A  K  D  Q  V  R  V  I  K  C  H  R  D  S  N  Q  A  F  E  V  Y  S  S  I  E  Q  A  R  S  V  Y  G  P  S  Q  S  K  :  A  L  V  K  T  K  V  T  R  P  Y  S  P  F  A  D  V  V  S  S  E  G  I  C  S  W  S  P  Q  Q  M  P  T  S  T  F  G  S  S  E  Q  *  R  T  K  Q  *  W  K  Q  N  E  G  C  Y  D  Q  L  I  S  F  Q  *  S  Y  R  F  P  L  L  K  W  Q  N  P  H  K  V  Q  V  A  R  I  R  T  S  H  F  S  S  S  K  Y  R  N  A  C  I  Y  D  I  S  V  S  Q  P  I  S  R  C  A  R  N  I  R  T  I  *  Y  P  G  N  L  Y  S  S  S  R  P  F  *  T  Y  T  Y  T  I  S  R  W  W  P  D  I  P  *  F  W  G  K  P  C  K  L  S  F  T  M  L  H  C  L  E  C  V  *  L  L  I  *  L  G  C  L  H  *  S  E  Y  F  L  R  Y  I  Y  I  Y  T  *  S  M  Y  Q  V  E  T  E  I  L  K  K  G  K  F  L  *  Q  F  P  *  C  C  *  L  I  S  Q  Q  L  *  V  N  S  I  S  S  G  S  F  L  F </first_frame>
            <second_frame>  K  I  T  S  C  C  L  K  E  E  *  F  L  L  L  T  G  G  S  F  C  C  N :   N  L  P  I  L  L  H  K  R  S  S  I  R  L  E  I  H  V  Q  F  Y  G  M  S  S  W  K  T  W  *  Q  W  N  *  L  M  E  R  K  I  F  Q  M  V  P  L  H  G  L  *  C  I  C  K  V  E  L  L  R  Q  R  T  K  F  V  S  *  S  V  I  V  I  R  I  K  R  L  K  F  I  L  L  S  S  K  H  G  V  F  M  D  Q  V  S  Q  R :   H  W  L  K  Q  K  *  L  D  H  I  L  L  L  P  M  W  S  A  V  K  E  F  A  P  G  L  L  S  R  C  L  L  R  L  L  E  A  V  S  S  E  E  L  N  N  D  G  S  K  M  K  D  V  M  T  N  *  Y  H  S  N  K  A  I  A  F  H  C  *  N  G  R  T  L  T  R  Y  K  W  Q  E  S  G  L  V  T  F  R  L  Q  N  I  E  M  H  V  Y  M  I  Y  L  C  L  S  L  S  V  G  V  L  E  I  L  G  P  Y  N  T  P  E  T  C  T  A  L  L  V  P  F  K  P  I  P  I  L  *  V  D  G  G  L  I  S  H  N  S  G  E  N  P  V  N  *  A  S  P  C  S  I  A  *  N  V  Y  S  F  *  F  N  L  D  A  S  I  N  L  N  I  S  L  D  I  Y  I  Y  I  R  S  L  C  T  K  S  K  L  K  F  S  K  K  G  S  F  C  S  N  S  L  D  V  V  D  *  F  L  S  S  C  K  *  I  P  F  Q  V  D  R  F  C   </second_frame>
            <third_frame>   K  S  L  L  A  A  *  R  K  N  N  S  C  Y  S  P  E  G  H  S  V  A   : T  T  F  Q  S  Y  C  T  K  E  V  Q  S  G  *  R  S  M  C  S  F  M  G  C  P  L  G  R  P  G  D  N  G  I  D  S  W  K  E  R  S  S  K  W  S  P  F  T  A  Y  N  V  S  A  K  S  N  Y  *  G  K  G  P  S  S  C  H  K  V  S  S  *  F  E  S  S  V  *  S  L  F  F  Y  R  A  S  T  E  C  L  W  T  K  S  V  K   : G  I  G  *  N  K  S  D  *  T  I  F  S  F  C  R  C  G  Q  Q  *  R  N  L  L  L  V  S  S  A  D  A  Y  F  D  F  W  K  Q  *  A  V  K  N  *  T  M  M  E  A  K  *  R  M  L  *  P  T  N  I  I  P  I  K  L  S  L  S  I  A  K  M  A  E  P  S  Q  G  T  S  G  K  N  Q  D  *  S  L  F  V  F  K  I  *  K  C  M  Y  I  *  Y  I  C  V  S  A  Y  Q  *  V  C  *  K  Y  *  D  H  I  I  P  R  K  L  V  Q  L  F  S  S  L  L  N  L  Y  L  Y  Y  K  *  M  V  A  *  Y  P  I  I  L  G  K  T  L  *  T  K  L  H  H  A  P  L  L  R  M  C  I  A  F  D  L  T  W  M  P  P  L  I  *  I  F  P  *  I  Y  I  Y  I  Y  V  V  Y  V  P  S  R  N  *  N  S  Q  K  R  E  V  F  V  A  I  P  L  M  L  L  T  N  F  S  A  V  V  S  E  F  H  F  K  W  I  V  F  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0018D02.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106630" stop="106562"/>
                    <exon start="106435" stop="106148"/>
                    <exon start="105966" stop="105841"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>480</number_coding_nucleotides>
                  <number_encoded_amino_acids>160</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENHFLLPKGRIILVTHRRVILLQQPSNLIAQKKFNPARDPCAVLWDVLLEDLVTMELTHGKKDLPNGPPSRLIMYLQSRTIEAKDQVRVIKCHRDSNQAFEVYSSIEQARSVYGPSQSKALVKTKVTRPYSPFADVVSSEGICSWSPQQMPTSTFGSSEQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0018D02.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105755" stop="105555"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NGRTLTRYKWQESGLVTFRLQNIEMHVYMIYLCLSLSVGVLEILGPYNTPETCTALLVPFKPIPIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 153 chains have been computed
$ 
$ memory statistics:
$ 236432 bytes spliced alignments in total
$ 72 spliced alignments have been stored
$ 3283 bytes was the average size of a spliced alignment
$ 17144 bytes predicted gene locations in total
$ 9 predicted gene locations have been stored
$ 1904 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 198 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-20 08:32:47
-->
