SW perc perc perc query position in query matching repeat position in repeat score div. del. ins. sequence begin end (left) repeat class/family begin end (left) ID 1075 13.5 2.5 2.0 C09SLm0004H04.1 1452 1648 (128290) + Unknown00046 Unknown 302 499 (9545) 1 531 15.1 2.2 8.7 C09SLm0004H04.1 1546 1683 (128255) + Copia00094 Copia 4461 4589 (1020) 2 * 240 9.3 1.7 10.0 C09SLm0004H04.1 4430 4489 (125449) C Gypsy00080 Gypsy (2006) 7940 7886 3 527 21.4 3.2 0.7 C09SLm0004H04.1 9396 9550 (120388) + Copia00094 Copia 4308 4466 (1143) 4 * 1621 15.0 4.5 3.3 C09SLm0004H04.1 9415 9751 (120187) + Unknown00046 Unknown 199 539 (9505) 5 1305 8.2 0.8 6.6 C09SLm0004H04.1 11477 11796 (118142) + Copia00008 Copia 1 5115 (19) 6 298 25.0 1.1 0.0 C09SLm0004H04.1 11722 11809 (118129) C Copia00198 Copia (214) 8142 8054 7 * 287 29.1 4.1 7.7 C09SLm0004H04.1 12395 12588 (117350) + Copia00124 Copia 795 981 (4289) 8 1076 23.0 10.8 2.9 C09SLm0004H04.1 13417 13899 (116039) C Copia00053 Copia (1737) 3336 2816 9 2752 11.9 0.5 0.6 C09SLm0004H04.1 14006 14535 (115403) + Copia00008 Copia 1 5115 (0) 10 225 14.0 0.0 1.7 C09SLm0004H04.1 20559 20616 (109322) + Gypsy00042 Gypsy 5915 5971 (1527) 11 249 24.0 1.9 7.7 C09SLm0004H04.1 22482 22585 (107353) C Gypsy00073 Gypsy (100) 11984 11887 12 473 9.1 0.0 0.0 C09SLm0004H04.1 28175 28240 (101698) C Unknown00030 Unknown (81) 1385 1320 13 555 9.3 8.2 0.0 C09SLm0004H04.1 29168 29264 (100674) + Unknown00030 Unknown 1276 1380 (86) 14 2130 11.6 0.0 0.0 C09SLm0004H04.1 31259 31568 (98370) + Copia00110 Copia 2409 2718 (11414) 15 677 16.6 0.7 6.5 C09SLm0004H04.1 43129 43283 (86655) C SINE_SO Unknown (41) 148 3 16 268 14.6 1.0 5.0 C09SLm0004H04.1 44553 44653 (85285) + STOWAWAY50_OS Unknown 33 129 (45) 17 1330 15.9 2.0 0.8 C09SLm0004H04.1 48545 48798 (81140) C Copia00168 Copia (2) 4654 4398 18 1040 16.9 6.7 2.2 C09SLm0004H04.1 48563 48829 (81109) + Unknown00035 Unknown 1 279 (2602) 19 * 4755 6.1 0.1 6.0 C09SLm0004H04.1 50689 51388 (78550) + Unknown00019 Unknown 40 698 (13935) 20 1725 15.5 0.0 0.7 C09SLm0004H04.1 51392 51683 (78255) C Copia00110 Copia (11436) 2696 2407 21 238 15.7 3.9 0.0 C09SLm0004H04.1 53884 53934 (76004) + ISABELLE_TM Unknown 8005 8057 (351) 22 1412 20.3 1.7 0.3 C09SLm0004H04.1 67296 67591 (62347) + TLP2 Unknown 7 306 (0) 23 564 12.9 2.0 0.0 C09SLm0004H04.1 72865 72965 (56973) + Copia00149 Copia 8170 8272 (6211) 24 1207 23.1 4.2 7.1 C09SLm0004H04.1 73943 74491 (55447) C Copia00149 Copia (5913) 8570 8038 25 * 3244 21.2 1.2 1.9 C09SLm0004H04.1 74136 74884 (55054) C Unknown00019 Unknown (0) 14633 13890 26 1185 14.3 1.1 5.3 C09SLm0004H04.1 74875 75139 (54799) + Copia00110 Copia 1719 1972 (12160) 27 * 1279 21.1 1.1 0.4 C09SLm0004H04.1 75130 75391 (54547) C Gypsy00049 Gypsy (826) 13704 13441 28 1846 23.2 2.4 0.8 C09SLm0004H04.1 75530 76024 (53914) C Unknown00046 Unknown (8892) 1152 650 29 2677 31.8 1.0 0.8 C09SLm0004H04.1 82015 83076 (46862) C SHACOP18_I_MT Unknown (0) 3936 2873 30 1313 33.5 5.5 6.2 C09SLm0004H04.1 83077 84072 (45866) C Copia00126 Copia (124) 3895 1863 31 * 1324 33.0 4.3 2.6 C09SLm0004H04.1 83377 84335 (45603) C SHACOP4_I_MT Unknown (1476) 2549 1575 32 * 7122 25.9 3.5 3.0 C09SLm0004H04.1 83555 85856 (44082) + Copia00201 Copia 1103 3416 (0) 33 255 20.4 0.0 0.0 C09SLm0004H04.1 87401 87449 (42489) + TS Unknown 111 159 (2) 34 7020 20.0 4.9 8.1 C09SLm0004H04.1 88379 89336 (40602) + Gypsy00208 Gypsy 4713 6880 (1175) 35 8202 12.2 0.4 1.2 C09SLm0004H04.1 89337 90634 (39304) C Copia00153 Copia (1740) 5649 4362 36 231 2.1 2.1 0.0 C09SLm0004H04.1 91323 91370 (38568) C STOWAWAY50_OS Unknown (45) 129 81 37 * 314 10.2 0.0 3.3 C09SLm0004H04.1 91328 91388 (38550) + Gypsy00046 Gypsy 4126 4184 (6887) 38 * 9154 11.5 2.3 4.2 C09SLm0004H04.1 91368 92854 (37084) + Gypsy00210 Gypsy 6469 7926 (7) 39 * 11788 13.4 3.3 2.9 C09SLm0004H04.1 91578 94823 (35115) C Unknown00037 Unknown (5) 4448 607 40 3435 14.1 5.0 2.5 C09SLm0004H04.1 94763 95438 (34500) + Gypsy00210 Gypsy 712 1404 (6529) 41 * 265 19.6 5.5 1.8 C09SLm0004H04.1 100342 100450 (29488) + Copia00151 Copia 8269 8381 (2380) 42 492 27.4 0.8 5.9 C09SLm0004H04.1 100773 101009 (28929) + Copia00151 Copia 8478 8702 (2059) 42 235 8.9 8.9 0.0 C09SLm0004H04.1 102081 102125 (27813) C Copia00105 Copia (8332) 525 477 43 3926 4.1 0.3 3.5 C09SLm0004H04.1 104562 105268 (24670) + Copia00112 Copia 9 5035 (3852) 44 313 6.9 0.0 3.3 C09SLm0004H04.1 107687 107746 (22192) + Gypsy00178 Gypsy 6504 6561 (2530) 45 252 5.8 0.0 0.0 C09SLm0004H04.1 107701 107752 (22186) C MuDR1_HV Unknown (5160) 1300 1249 46 * 860 23.4 5.2 0.0 C09SLm0004H04.1 108362 108592 (21346) C SONATA1 Unknown (0) 243 1 47 341 12.3 8.5 1.2 C09SLm0004H04.1 109440 109521 (20417) C Copia00110 Copia (645) 13487 13400 48 400 17.6 0.0 2.1 C09SLm0004H04.1 109606 109698 (20240) C Copia00110 Copia (891) 13241 13151 48 427 20.8 0.0 0.0 C09SLm0004H04.1 110048 110119 (19819) + Gypsy00205 Gypsy 4819 4890 (6422) 49 556 29.5 5.0 1.4 C09SLm0004H04.1 111121 111261 (18677) + LSU-rRNA_Ath Unknown 642 787 (2588) 50 8222 13.3 1.5 8.0 C09SLm0004H04.1 112749 114501 (15437) C Copia00191 Copia (426) 4300 2662 51 632 17.5 14.0 2.1 C09SLm0004H04.1 114928 115120 (14818) C Copia00191 Copia (2383) 2343 2128 51 880 20.8 12.2 0.4 C09SLm0004H04.1 115601 115837 (14101) C TLP1 Unknown (397) 265 1 52 227 22.3 0.9 12.2 C09SLm0004H04.1 115748 115854 (14084) C Copia00089 Copia (5951) 5505 5411 53 * 671 15.9 4.5 5.5 C09SLm0004H04.1 116724 116943 (12995) C Unknown00020 Unknown (746) 4459 4242 54 1577 6.0 1.4 0.9 C09SLm0004H04.1 117815 118034 (11904) C Unknown00020 Unknown (1119) 4086 3866 55 599 15.1 16.8 1.2 C09SLm0004H04.1 118419 118579 (11359) C Copia00191 Copia (2413) 2313 2128 56 11070 14.7 3.5 2.3 C09SLm0004H04.1 118630 122073 (7865) + Copia00205 Copia 499 4050 (6206) 57 880 20.5 4.7 3.0 C09SLm0004H04.1 122074 122309 (7629) C Gypsy00049 Gypsy (14073) 457 218 58 924 22.7 10.8 6.8 C09SLm0004H04.1 122838 123234 (6704) C Copia00149 Copia (3483) 11000 10588 59 245 17.5 2.3 8.1 C09SLm0004H04.1 123167 123253 (6685) C Gypsy00049 Gypsy (115) 14415 14334 60 * 357 0.0 1.2 7.5 C09SLm0004H04.1 123812 123891 (6047) C Copia00181 Copia (346) 1890 1816 61 * 382 5.1 1.2 1.2 C09SLm0004H04.1 123836 123915 (6023) C Gypsy00046 Gypsy (6917) 4154 4075 62 15509 16.6 4.4 8.5 C09SLm0004H04.1 125333 128961 (977) C Copia00149 Copia (5751) 8732 5253 63 6924 21.3 2.0 24.3 C09SLm0004H04.1 125743 129935 (3) C Unknown00019 Unknown (128) 14505 11249 64 *