##gff-version 3
##sequence-region C09SLe0001L13.1 1 25001
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato_potato	match	6023	8688	0.992	+	0	ID=SGN-E698998_alignment_1;Target=SGN-E698998 1 854 +
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato_potato	match_part	6023	6225	0.975	+	0	ID=GTH_SGN_E_tom_potato_match_part_1;Target=SGN-E698998 1 204 +;Parent=SGN-E698998_alignment_1
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato_potato	match_part	6908	7014	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_2;Target=SGN-E698998 205 311 +;Parent=SGN-E698998_alignment_1
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato_potato	match_part	7128	7184	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_3;Target=SGN-E698998 312 368 +;Parent=SGN-E698998_alignment_1
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato_potato	match_part	7279	7339	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_4;Target=SGN-E698998 369 429 +;Parent=SGN-E698998_alignment_1
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato_potato	match_part	7424	7667	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_5;Target=SGN-E698998 430 673 +;Parent=SGN-E698998_alignment_1
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato_potato	match_part	8508	8688	0.989	+	0	ID=GTH_SGN_E_tom_potato_match_part_6;Target=SGN-E698998 674 854 +;Parent=SGN-E698998_alignment_1
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato_potato	match	6932	9053	0.994	+	0	ID=SGN-E738568_alignment_1;Target=SGN-E738568 25 916 +
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato_potato	match_part	6932	7014	0.952	+	0	ID=GTH_SGN_E_tom_potato_match_part_7;Target=SGN-E738568 25 105 +;Parent=SGN-E738568_alignment_1
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato_potato	match_part	7128	7184	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_8;Target=SGN-E738568 106 162 +;Parent=SGN-E738568_alignment_1
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato_potato	match_part	7279	7339	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_9;Target=SGN-E738568 163 223 +;Parent=SGN-E738568_alignment_1
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato_potato	match_part	7424	7667	1.000	+	0	ID=GTH_SGN_E_tom_potato_match_part_10;Target=SGN-E738568 224 467 +;Parent=SGN-E738568_alignment_1
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato_potato	match_part	8508	8941	0.998	+	0	ID=GTH_SGN_E_tom_potato_match_part_11;Target=SGN-E738568 468 901 +;Parent=SGN-E738568_alignment_1
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato_potato	match_part	9039	9053	0.600	+	0	ID=GTH_SGN_E_tom_potato_match_part_12;Target=SGN-E738568 902 916 +;Parent=SGN-E738568_alignment_1
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato_potato	match	7424	9056	0.985	+	0	ID=SGN-E738543_alignment_1;Target=SGN-E738543 3 619 +
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato_potato	match_part	7424	7667	0.967	+	0	ID=GTH_SGN_E_tom_potato_match_part_13;Target=SGN-E738543 3 244 +;Parent=SGN-E738543_alignment_1
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato_potato	match_part	8508	8864	0.997	+	0	ID=GTH_SGN_E_tom_potato_match_part_14;Target=SGN-E738543 245 601 +;Parent=SGN-E738543_alignment_1
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato_potato	match_part	9039	9056	0.556	+	0	ID=GTH_SGN_E_tom_potato_match_part_15;Target=SGN-E738543 602 619 +;Parent=SGN-E738543_alignment_1
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato_potato	match	7424	9056	0.995	+	0	ID=SGN-E740963_alignment_1;Target=SGN-E740963 1 619 +
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato_potato	match_part	7424	7667	0.992	+	0	ID=GTH_SGN_E_tom_potato_match_part_16;Target=SGN-E740963 1 244 +;Parent=SGN-E740963_alignment_1
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato_potato	match_part	8508	8864	0.997	+	0	ID=GTH_SGN_E_tom_potato_match_part_17;Target=SGN-E740963 245 601 +;Parent=SGN-E740963_alignment_1
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato_potato	match_part	9039	9056	0.556	+	0	ID=GTH_SGN_E_tom_potato_match_part_18;Target=SGN-E740963 602 619 +;Parent=SGN-E740963_alignment_1
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato_potato	match	7425	8864	0.993	+	0	ID=SGN-E735311_alignment_1;Target=SGN-E735311 1 600 +
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato_potato	match_part	7425	7667	0.988	+	0	ID=GTH_SGN_E_tom_potato_match_part_19;Target=SGN-E735311 1 243 +;Parent=SGN-E735311_alignment_1
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato_potato	match_part	8508	8864	0.997	+	0	ID=GTH_SGN_E_tom_potato_match_part_20;Target=SGN-E735311 244 600 +;Parent=SGN-E735311_alignment_1
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato_potato	match	7426	9056	0.997	+	0	ID=SGN-E738217_alignment_1;Target=SGN-E738217 1 617 +
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato_potato	match_part	7426	7667	0.996	+	0	ID=GTH_SGN_E_tom_potato_match_part_21;Target=SGN-E738217 1 242 +;Parent=SGN-E738217_alignment_1
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato_potato	match_part	8508	8864	0.997	+	0	ID=GTH_SGN_E_tom_potato_match_part_22;Target=SGN-E738217 243 599 +;Parent=SGN-E738217_alignment_1
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato_potato	match_part	9039	9056	0.556	+	0	ID=GTH_SGN_E_tom_potato_match_part_23;Target=SGN-E738217 600 617 +;Parent=SGN-E738217_alignment_1
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato_potato	gene	6023	9056	.	+	0	ID=GTH_SGN_E_tom_potato_gene_1
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato_potato	mRNA	6023	9056	.	+	0	ID=GTH_SGN_E_tom_potato_gene_1_AGS_1;Parent=GTH_SGN_E_tom_potato_gene_1
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato_potato	exon	6023	6225	0.975	+	0	ID=GTH_SGN_E_tom_potato_exon_1;Parent=GTH_SGN_E_tom_potato_gene_1_AGS_1
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato_potato	exon	6908	7014	1.000	+	0	ID=GTH_SGN_E_tom_potato_exon_2;Parent=GTH_SGN_E_tom_potato_gene_1_AGS_1
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato_potato	exon	7128	7184	1.000	+	0	ID=GTH_SGN_E_tom_potato_exon_3;Parent=GTH_SGN_E_tom_potato_gene_1_AGS_1
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato_potato	exon	7279	7339	1.000	+	0	ID=GTH_SGN_E_tom_potato_exon_4;Parent=GTH_SGN_E_tom_potato_gene_1_AGS_1
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato_potato	exon	7424	7667	1.000	+	0	ID=GTH_SGN_E_tom_potato_exon_5;Parent=GTH_SGN_E_tom_potato_gene_1_AGS_1
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato_potato	exon	8508	8864	0.997	+	0	ID=GTH_SGN_E_tom_potato_exon_6;Parent=GTH_SGN_E_tom_potato_gene_1_AGS_1
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato_potato	exon	9039	9056	0.556	+	0	ID=GTH_SGN_E_tom_potato_exon_7;Parent=GTH_SGN_E_tom_potato_gene_1_AGS_1
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato_potato	mRNA	6023	9053	.	+	0	ID=GTH_SGN_E_tom_potato_gene_1_AGS_2;Parent=GTH_SGN_E_tom_potato_gene_1
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato_potato	exon	6023	6225	0.975	+	0	ID=GTH_SGN_E_tom_potato_exon_8;Parent=GTH_SGN_E_tom_potato_gene_1_AGS_2
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato_potato	exon	6908	7014	1.000	+	0	ID=GTH_SGN_E_tom_potato_exon_9;Parent=GTH_SGN_E_tom_potato_gene_1_AGS_2
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato_potato	exon	7128	7184	1.000	+	0	ID=GTH_SGN_E_tom_potato_exon_10;Parent=GTH_SGN_E_tom_potato_gene_1_AGS_2
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato_potato	exon	7279	7339	1.000	+	0	ID=GTH_SGN_E_tom_potato_exon_11;Parent=GTH_SGN_E_tom_potato_gene_1_AGS_2
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato_potato	exon	7424	7667	1.000	+	0	ID=GTH_SGN_E_tom_potato_exon_12;Parent=GTH_SGN_E_tom_potato_gene_1_AGS_2
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato_potato	exon	8508	8941	0.998	+	0	ID=GTH_SGN_E_tom_potato_exon_13;Parent=GTH_SGN_E_tom_potato_gene_1_AGS_2
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato_potato	exon	9039	9053	0.600	+	0	ID=GTH_SGN_E_tom_potato_exon_14;Parent=GTH_SGN_E_tom_potato_gene_1_AGS_2
C09SLe0001L13.1	RepeatMasker	nucleotide_motif	150	177	226	-	0	ID=ATHILA6C_LTR_alignment_1;Target=ATHILA6C_LTR 1025 1052 -
C09SLe0001L13.1	RepeatMasker	nucleotide_motif	465	561	239	+	0	ID=GYCUME1_LTR_alignment_1;Target=GYCUME1_LTR 341 442 +
C09SLe0001L13.1	RepeatMasker	nucleotide_motif	504	578	240	-	0	ID=Gypsy00046_alignment_1;Target=Gypsy00046 4070 4146 -
C09SLe0001L13.1	RepeatMasker	nucleotide_motif	1092	1366	880	-	0	ID=Gypsy00043_alignment_1;Target=Gypsy00043 1066 1343 -
C09SLe0001L13.1	RepeatMasker	nucleotide_motif	1313	1661	1460	-	0	ID=Copia00110_alignment_1;Target=Copia00110 13267 13623 -
C09SLe0001L13.1	RepeatMasker	nucleotide_motif	1388	1929	738	+	0	ID=Unknown00019_alignment_1;Target=Unknown00019 154 698 +
C09SLe0001L13.1	RepeatMasker	nucleotide_motif	1727	1933	831	-	0	ID=Copia00110_alignment_2;Target=Copia00110 13160 13361 -
C09SLe0001L13.1	RepeatMasker	nucleotide_motif	1873	1940	261	-	0	ID=Gypsy00073_alignment_1;Target=Gypsy00073 608 677 -
C09SLe0001L13.1	RepeatMasker	nucleotide_motif	6419	6537	582	+	0	ID=Copia00172_alignment_1;Target=Copia00172 1193 1313 +
C09SLe0001L13.1	RepeatMasker	nucleotide_motif	13064	13213	289	+	0	ID=Unknown00043_alignment_1;Target=Unknown00043 5547 5696 +
C09SLe0001L13.1	RepeatMasker	nucleotide_motif	14510	14681	458	-	0	ID=Copia00053_alignment_1;Target=Copia00053 4610 4771 -
C09SLe0001L13.1	RepeatMasker	nucleotide_motif	14765	15472	1240	-	0	ID=Gypsy00120_alignment_1;Target=Gypsy00120 1529 2250 -
C09SLe0001L13.1	RepeatMasker	nucleotide_motif	14806	15555	1102	+	0	ID=Gypsy00158_alignment_1;Target=Gypsy00158 3260 4028 +
C09SLe0001L13.1	RepeatMasker	nucleotide_motif	21335	21589	692	-	0	ID=TS2_alignment_1;Target=TS2 405 655 -
C09SLe0001L13.1	RepeatMasker	nucleotide_motif	21651	21843	686	-	0	ID=TS2_alignment_2;Target=TS2 185 376 -
C09SLe0001L13.1	RepeatMasker	nucleotide_motif	22943	23180	955	-	0	ID=Unknown00043_alignment_2;Target=Unknown00043 5296 5549 -
C09SLe0001L13.1	BLAST_tomato_bacs	match	22819	24954	4098	+	0	ID=C09HBa0026I24.3_fwd_alignment_1;blast_gaps=0;Target=clone-C09HBa0026I24.3 2657 4792 +;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=0.0
C09SLe0001L13.1	BLAST_tomato_bacs	match	20165	22802	5033	+	0	ID=C09HBa0026I24.3_fwd_alignment_2;blast_gaps=0;Target=clone-C09HBa0026I24.3 3 2640 +;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=0.0
C09SLe0001L13.1	Contigs	contig	1	2115	.	.	0	ID=contig1_1;length=2115
C09SLe0001L13.1	Contigs	contig	2216	4795	.	.	0	ID=contig2_1;length=2580
C09SLe0001L13.1	Contigs	contig	4896	10960	.	.	0	ID=contig3_1;length=6065
C09SLe0001L13.1	Contigs	contig	11061	15582	.	.	0	ID=contig4_1;length=4522
C09SLe0001L13.1	Contigs	contig	15683	20062	.	.	0	ID=contig5_1;length=4380
C09SLe0001L13.1	Contigs	contig	20163	25001	.	.	0	ID=contig6_1;length=4839
C09SLe0001L13.1	BLAST_tomato_bac_ends	clone_end	28	150	244	+	0	ID=C09SLe0001L13.1-SL_MboI0040M05_SP6_282840_1;blast_gaps=0;Target=SL_MboI0040M05_SP6_282840 642 764 +;is_problematic=0;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=2e-61
C09SLe0001L13.1	BLAST_tomato_bac_ends	clone_start	756	921	329	+	0	ID=C09SLe0001L13.1-SL_MboI0101B12_T7_300025_1;blast_gaps=0;Target=SL_MboI0101B12_T7_300025 34 199 +;is_problematic=0;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=4e-87
C09SLe0001L13.1	BLAST_tomato_bac_ends	clone_start	1579	2082	991	-	0	ID=C09SLe0001L13.1-SL_EcoRI0029H14_T7_234033_1;blast_gaps=0;Target=SL_EcoRI0029H14_T7_234033 1 504 +;is_problematic=0;blast_percent_identity=99.80;blast_mismatches=1;blast_evalue=0.0
C09SLe0001L13.1	BLAST_tomato_bac_ends	clone_end	6277	6752	896	+	0	ID=C09SLe0001L13.1-SL_FOS0033J11_pIBR_439973_1;blast_gaps=0;Target=SL_FOS0033J11_pIBR_439973 3 478 +;is_problematic=0;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=0.0
C09SLe0001L13.1	BLAST_tomato_bac_ends	clone_end	7662	8178	922	+	0	ID=C09SLe0001L13.1-SL_MboI0143P15_SP6_364768_1;blast_gaps=1;Target=SL_MboI0143P15_SP6_364768 14 531 +;is_problematic=0;blast_percent_identity=98.46;blast_mismatches=7;blast_evalue=0.0
C09SLe0001L13.1	BLAST_tomato_bac_ends	clone_end	14944	15548	1199	-	0	ID=C09SLe0001L13.1-LE_HBa0019J18_SP6_132167_1;blast_gaps=0;Target=LE_HBa0019J18_SP6_132167 24 628 +;is_problematic=0;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=0.0
C09SLe0001L13.1	BLAST_tomato_bac_ends	clone_start	15342	15548	410	+	0	ID=C09SLe0001L13.1-LE_HBa0056D12_T7_44327_1;blast_gaps=0;Target=LE_HBa0056D12_T7_44327 1 207 +;is_problematic=0;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=1e-111
C09SLe0001L13.1	BLAST_tomato_bac_ends	clone_end	17921	18167	490	+	0	ID=C09SLe0001L13.1-SL_FOS0187O02_pIBR_544155_1;blast_gaps=0;Target=SL_FOS0187O02_pIBR_544155 1 247 +;is_problematic=0;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=2e-135
C09SLe0001L13.1	BLAST_tomato_bac_ends	clone_start	18419	19091	1302	-	0	ID=C09SLe0001L13.1-SL_EcoRI0084P02_T7_351687_1;blast_gaps=0;Target=SL_EcoRI0084P02_T7_351687 51 723 +;is_problematic=0;blast_percent_identity=99.41;blast_mismatches=4;blast_evalue=0.0
C09SLe0001L13.1	BLAST_tomato_bac_ends	clone_end	18633	19182	1059	-	0	ID=C09SLe0001L13.1-SL_EcoRI0028C04_SP6_233131_1;blast_gaps=1;Target=SL_EcoRI0028C04_SP6_233131 21 569 +;is_problematic=0;blast_percent_identity=99.45;blast_mismatches=2;blast_evalue=0.0
C09SLe0001L13.1	BLAST_tomato_bac_ends	clone_start	19184	19789	1082	-	0	ID=C09SLe0001L13.1-SL_MboI0124I06_T7_193920_1;blast_gaps=0;Target=SL_MboI0124I06_T7_193920 1 606 +;is_problematic=0;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=0.0
C09SLe0001L13.1	BLAST_tomato_bac_ends	clone_end	20165	20444	555	+	0	ID=C09SLe0001L13.1-SL_FOS0230K24_pIBR_577031_1;blast_gaps=0;Target=SL_FOS0230K24_pIBR_577031 482 761 +;is_problematic=0;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=4e-155
C09SLe0001L13.1	BLAST_tomato_bac_ends	clone_end	20177	20853	1273	+	0	ID=C09SLe0001L13.1-LE_HBa0026I24_SP6_136739_1;blast_gaps=1;Target=LE_HBa0026I24_SP6_136739 1 678 +;is_problematic=0;blast_percent_identity=99.71;blast_mismatches=1;blast_evalue=0.0
C09SLe0001L13.1	BLAST_tomato_bac_ends	clone_start	20476	21074	1140	+	0	ID=C09SLe0001L13.1-LE_HBa0165F03_T7_255664_1;blast_gaps=0;Target=LE_HBa0165F03_T7_255664 9 607 +;is_problematic=0;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=0.0
C09SLe0001L13.1	BLAST_tomato_bac_ends	clone_start	20501	20876	737	+	0	ID=C09SLe0001L13.1-LE_HBa0023O01_T7_134678_1;blast_gaps=0;Target=LE_HBa0023O01_T7_134678 7 382 +;is_problematic=0;blast_percent_identity=99.73;blast_mismatches=1;blast_evalue=0.0
C09SLe0001L13.1	BLAST_tomato_bac_ends	clone_start	24315	24926	1213	-	0	ID=C09SLe0001L13.1-SL_EcoRI0001L13_T7_384539_1;blast_gaps=0;Target=SL_EcoRI0001L13_T7_384539 36 647 +;is_problematic=0;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=0.0
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato	match	6023	8688	0.992	+	0	ID=SGN-E698998_alignment_2;Target=SGN-E698998 1 854 +
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato	match_part	6023	6225	0.975	+	0	ID=GTH_SGN_E_tom_match_part_1;Target=SGN-E698998 1 204 +;Parent=SGN-E698998_alignment_2
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato	match_part	6908	7014	1.000	+	0	ID=GTH_SGN_E_tom_match_part_2;Target=SGN-E698998 205 311 +;Parent=SGN-E698998_alignment_2
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato	match_part	7128	7184	1.000	+	0	ID=GTH_SGN_E_tom_match_part_3;Target=SGN-E698998 312 368 +;Parent=SGN-E698998_alignment_2
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato	match_part	7279	7339	1.000	+	0	ID=GTH_SGN_E_tom_match_part_4;Target=SGN-E698998 369 429 +;Parent=SGN-E698998_alignment_2
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato	match_part	7424	7667	1.000	+	0	ID=GTH_SGN_E_tom_match_part_5;Target=SGN-E698998 430 673 +;Parent=SGN-E698998_alignment_2
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato	match_part	8508	8688	0.989	+	0	ID=GTH_SGN_E_tom_match_part_6;Target=SGN-E698998 674 854 +;Parent=SGN-E698998_alignment_2
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato	match	6932	9053	0.994	+	0	ID=SGN-E738568_alignment_2;Target=SGN-E738568 25 916 +
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato	match_part	6932	7014	0.952	+	0	ID=GTH_SGN_E_tom_match_part_7;Target=SGN-E738568 25 105 +;Parent=SGN-E738568_alignment_2
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato	match_part	7128	7184	1.000	+	0	ID=GTH_SGN_E_tom_match_part_8;Target=SGN-E738568 106 162 +;Parent=SGN-E738568_alignment_2
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato	match_part	7279	7339	1.000	+	0	ID=GTH_SGN_E_tom_match_part_9;Target=SGN-E738568 163 223 +;Parent=SGN-E738568_alignment_2
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato	match_part	7424	7667	1.000	+	0	ID=GTH_SGN_E_tom_match_part_10;Target=SGN-E738568 224 467 +;Parent=SGN-E738568_alignment_2
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato	match_part	8508	8941	0.998	+	0	ID=GTH_SGN_E_tom_match_part_11;Target=SGN-E738568 468 901 +;Parent=SGN-E738568_alignment_2
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato	match_part	9039	9053	0.600	+	0	ID=GTH_SGN_E_tom_match_part_12;Target=SGN-E738568 902 916 +;Parent=SGN-E738568_alignment_2
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato	match	7424	9056	0.985	+	0	ID=SGN-E738543_alignment_2;Target=SGN-E738543 3 619 +
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato	match_part	7424	7667	0.967	+	0	ID=GTH_SGN_E_tom_match_part_13;Target=SGN-E738543 3 244 +;Parent=SGN-E738543_alignment_2
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato	match_part	8508	8864	0.997	+	0	ID=GTH_SGN_E_tom_match_part_14;Target=SGN-E738543 245 601 +;Parent=SGN-E738543_alignment_2
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato	match_part	9039	9056	0.556	+	0	ID=GTH_SGN_E_tom_match_part_15;Target=SGN-E738543 602 619 +;Parent=SGN-E738543_alignment_2
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato	match	7424	9056	0.995	+	0	ID=SGN-E740963_alignment_2;Target=SGN-E740963 1 619 +
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato	match_part	7424	7667	0.992	+	0	ID=GTH_SGN_E_tom_match_part_16;Target=SGN-E740963 1 244 +;Parent=SGN-E740963_alignment_2
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato	match_part	8508	8864	0.997	+	0	ID=GTH_SGN_E_tom_match_part_17;Target=SGN-E740963 245 601 +;Parent=SGN-E740963_alignment_2
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato	match_part	9039	9056	0.556	+	0	ID=GTH_SGN_E_tom_match_part_18;Target=SGN-E740963 602 619 +;Parent=SGN-E740963_alignment_2
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato	match	7425	8864	0.993	+	0	ID=SGN-E735311_alignment_2;Target=SGN-E735311 1 600 +
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato	match_part	7425	7667	0.988	+	0	ID=GTH_SGN_E_tom_match_part_19;Target=SGN-E735311 1 243 +;Parent=SGN-E735311_alignment_2
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato	match_part	8508	8864	0.997	+	0	ID=GTH_SGN_E_tom_match_part_20;Target=SGN-E735311 244 600 +;Parent=SGN-E735311_alignment_2
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato	match	7426	9056	0.997	+	0	ID=SGN-E738217_alignment_2;Target=SGN-E738217 1 617 +
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato	match_part	7426	7667	0.996	+	0	ID=GTH_SGN_E_tom_match_part_21;Target=SGN-E738217 1 242 +;Parent=SGN-E738217_alignment_2
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato	match_part	8508	8864	0.997	+	0	ID=GTH_SGN_E_tom_match_part_22;Target=SGN-E738217 243 599 +;Parent=SGN-E738217_alignment_2
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato	match_part	9039	9056	0.556	+	0	ID=GTH_SGN_E_tom_match_part_23;Target=SGN-E738217 600 617 +;Parent=SGN-E738217_alignment_2
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato	gene	6023	9056	.	+	0	ID=GTH_SGN_E_tom_gene_1
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato	mRNA	6023	9056	.	+	0	ID=GTH_SGN_E_tom_gene_1_AGS_1;Parent=GTH_SGN_E_tom_gene_1
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato	exon	6023	6225	0.975	+	0	ID=GTH_SGN_E_tom_exon_1;Parent=GTH_SGN_E_tom_gene_1_AGS_1
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato	exon	6908	7014	1.000	+	0	ID=GTH_SGN_E_tom_exon_2;Parent=GTH_SGN_E_tom_gene_1_AGS_1
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato	exon	7128	7184	1.000	+	0	ID=GTH_SGN_E_tom_exon_3;Parent=GTH_SGN_E_tom_gene_1_AGS_1
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato	exon	7279	7339	1.000	+	0	ID=GTH_SGN_E_tom_exon_4;Parent=GTH_SGN_E_tom_gene_1_AGS_1
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato	exon	7424	7667	1.000	+	0	ID=GTH_SGN_E_tom_exon_5;Parent=GTH_SGN_E_tom_gene_1_AGS_1
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato	exon	8508	8864	0.997	+	0	ID=GTH_SGN_E_tom_exon_6;Parent=GTH_SGN_E_tom_gene_1_AGS_1
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato	exon	9039	9056	0.556	+	0	ID=GTH_SGN_E_tom_exon_7;Parent=GTH_SGN_E_tom_gene_1_AGS_1
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato	mRNA	6023	9053	.	+	0	ID=GTH_SGN_E_tom_gene_1_AGS_2;Parent=GTH_SGN_E_tom_gene_1
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato	exon	6023	6225	0.975	+	0	ID=GTH_SGN_E_tom_exon_8;Parent=GTH_SGN_E_tom_gene_1_AGS_2
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato	exon	6908	7014	1.000	+	0	ID=GTH_SGN_E_tom_exon_9;Parent=GTH_SGN_E_tom_gene_1_AGS_2
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato	exon	7128	7184	1.000	+	0	ID=GTH_SGN_E_tom_exon_10;Parent=GTH_SGN_E_tom_gene_1_AGS_2
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato	exon	7279	7339	1.000	+	0	ID=GTH_SGN_E_tom_exon_11;Parent=GTH_SGN_E_tom_gene_1_AGS_2
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato	exon	7424	7667	1.000	+	0	ID=GTH_SGN_E_tom_exon_12;Parent=GTH_SGN_E_tom_gene_1_AGS_2
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato	exon	8508	8941	0.998	+	0	ID=GTH_SGN_E_tom_exon_13;Parent=GTH_SGN_E_tom_gene_1_AGS_2
C09SLe0001L13.1	GenomeThreader_SGN_E_tomato	exon	9039	9053	0.600	+	0	ID=GTH_SGN_E_tom_exon_14;Parent=GTH_SGN_E_tom_gene_1_AGS_2
C09SLe0001L13.1	AUGUSTUS_tom_cdna	gene	5824	7585	1	+	.	ID=g1_1
C09SLe0001L13.1	AUGUSTUS_tom_cdna	transcript	5824	7585	.	+	.	ID=g1.t1_1;Parent=g1_1
C09SLe0001L13.1	AUGUSTUS_tom_cdna	start_codon	5824	5826	.	+	0	Parent=g1.t1_1
C09SLe0001L13.1	AUGUSTUS_tom_cdna	CDS	5824	5901	.	+	0	ID=g1.t1.cds_1;Parent=g1.t1_1
C09SLe0001L13.1	AUGUSTUS_tom_cdna	CDS	6004	6225	.	+	0	ID=g1.t1.cds_2;Parent=g1.t1_1
C09SLe0001L13.1	AUGUSTUS_tom_cdna	CDS	6908	7014	.	+	0	ID=g1.t1.cds_3;Parent=g1.t1_1
C09SLe0001L13.1	AUGUSTUS_tom_cdna	CDS	7128	7184	.	+	1	ID=g1.t1.cds_4;Parent=g1.t1_1
C09SLe0001L13.1	AUGUSTUS_tom_cdna	CDS	7279	7339	.	+	1	ID=g1.t1.cds_5;Parent=g1.t1_1
C09SLe0001L13.1	AUGUSTUS_tom_cdna	CDS	7424	7585	.	+	0	ID=g1.t1.cds_6;Parent=g1.t1_1
C09SLe0001L13.1	AUGUSTUS_tom_cdna	stop_codon	7583	7585	.	+	0	Parent=g1.t1_1
C09SLe0001L13.1	AUGUSTUS_tom_cdna	gene	8566	14097	1	-	.	ID=g2_1
C09SLe0001L13.1	AUGUSTUS_tom_cdna	transcript	8566	14097	.	-	.	ID=g2.t1_1;Parent=g2_1
C09SLe0001L13.1	AUGUSTUS_tom_cdna	stop_codon	8566	8568	.	-	0	Parent=g2.t1_1
C09SLe0001L13.1	AUGUSTUS_tom_cdna	CDS	8566	8611	.	-	1	ID=g2.t1.cds_1;Parent=g2.t1_1
C09SLe0001L13.1	AUGUSTUS_tom_cdna	CDS	11308	11369	.	-	0	ID=g2.t1.cds_2;Parent=g2.t1_1
C09SLe0001L13.1	AUGUSTUS_tom_cdna	CDS	11565	11637	.	-	1	ID=g2.t1.cds_3;Parent=g2.t1_1
C09SLe0001L13.1	AUGUSTUS_tom_cdna	CDS	13756	13865	.	-	0	ID=g2.t1.cds_4;Parent=g2.t1_1
C09SLe0001L13.1	AUGUSTUS_tom_cdna	CDS	13957	14097	.	-	0	ID=g2.t1.cds_5;Parent=g2.t1_1
C09SLe0001L13.1	AUGUSTUS_tom_cdna	start_codon	14095	14097	.	-	0	Parent=g2.t1_1
C09SLe0001L13.1	AUGUSTUS_tom_cdna	gene	17858	19145	1	+	.	ID=g3_1
C09SLe0001L13.1	AUGUSTUS_tom_cdna	transcript	17858	19145	.	+	.	ID=g3.t1_1;Parent=g3_1
C09SLe0001L13.1	AUGUSTUS_tom_cdna	start_codon	17858	17860	.	+	0	Parent=g3.t1_1
C09SLe0001L13.1	AUGUSTUS_tom_cdna	CDS	17858	18414	.	+	0	ID=g3.t1.cds_1;Parent=g3.t1_1
C09SLe0001L13.1	AUGUSTUS_tom_cdna	CDS	18495	18612	.	+	1	ID=g3.t1.cds_2;Parent=g3.t1_1
C09SLe0001L13.1	AUGUSTUS_tom_cdna	CDS	18688	18876	.	+	0	ID=g3.t1.cds_3;Parent=g3.t1_1
C09SLe0001L13.1	AUGUSTUS_tom_cdna	CDS	18975	19145	.	+	0	ID=g3.t1.cds_4;Parent=g3.t1_1
C09SLe0001L13.1	AUGUSTUS_tom_cdna	stop_codon	19143	19145	.	+	0	Parent=g3.t1_1
C09SLe0001L13.1	AUGUSTUS_ab_initio	gene	17858	19145	1	+	.	ID=g1_2
C09SLe0001L13.1	AUGUSTUS_ab_initio	transcript	17858	19145	.	+	.	ID=g1.t1_2;Parent=g1_2
C09SLe0001L13.1	AUGUSTUS_ab_initio	start_codon	17858	17860	.	+	0	Parent=g1.t1_2
C09SLe0001L13.1	AUGUSTUS_ab_initio	CDS	17858	18414	.	+	0	ID=g1.t1.cds_7;Parent=g1.t1_2
C09SLe0001L13.1	AUGUSTUS_ab_initio	CDS	18495	18612	.	+	1	ID=g1.t1.cds_8;Parent=g1.t1_2
C09SLe0001L13.1	AUGUSTUS_ab_initio	CDS	18688	18876	.	+	0	ID=g1.t1.cds_9;Parent=g1.t1_2
C09SLe0001L13.1	AUGUSTUS_ab_initio	CDS	18975	19145	.	+	0	ID=g1.t1.cds_10;Parent=g1.t1_2
C09SLe0001L13.1	AUGUSTUS_ab_initio	stop_codon	19143	19145	.	+	0	Parent=g1.t1_2
C09SLe0001L13.1	AUGUSTUS_tom_ugs	gene	5824	7585	1	+	.	ID=g1_3
C09SLe0001L13.1	AUGUSTUS_tom_ugs	transcript	5824	7585	.	+	.	ID=g1.t1_3;Parent=g1_3
C09SLe0001L13.1	AUGUSTUS_tom_ugs	start_codon	5824	5826	.	+	0	Parent=g1.t1_3
C09SLe0001L13.1	AUGUSTUS_tom_ugs	CDS	5824	5901	.	+	0	ID=g1.t1.cds_11;Parent=g1.t1_3
C09SLe0001L13.1	AUGUSTUS_tom_ugs	CDS	6004	6225	.	+	0	ID=g1.t1.cds_12;Parent=g1.t1_3
C09SLe0001L13.1	AUGUSTUS_tom_ugs	CDS	6908	7014	.	+	0	ID=g1.t1.cds_13;Parent=g1.t1_3
C09SLe0001L13.1	AUGUSTUS_tom_ugs	CDS	7128	7184	.	+	1	ID=g1.t1.cds_14;Parent=g1.t1_3
C09SLe0001L13.1	AUGUSTUS_tom_ugs	CDS	7279	7339	.	+	1	ID=g1.t1.cds_15;Parent=g1.t1_3
C09SLe0001L13.1	AUGUSTUS_tom_ugs	CDS	7424	7585	.	+	0	ID=g1.t1.cds_16;Parent=g1.t1_3
C09SLe0001L13.1	AUGUSTUS_tom_ugs	stop_codon	7583	7585	.	+	0	Parent=g1.t1_3
C09SLe0001L13.1	AUGUSTUS_tom_ugs	gene	8566	14097	1	-	.	ID=g2_2
C09SLe0001L13.1	AUGUSTUS_tom_ugs	transcript	8566	14097	.	-	.	ID=g2.t1_2;Parent=g2_2
C09SLe0001L13.1	AUGUSTUS_tom_ugs	stop_codon	8566	8568	.	-	0	Parent=g2.t1_2
C09SLe0001L13.1	AUGUSTUS_tom_ugs	CDS	8566	8611	.	-	1	ID=g2.t1.cds_6;Parent=g2.t1_2
C09SLe0001L13.1	AUGUSTUS_tom_ugs	CDS	11308	11369	.	-	0	ID=g2.t1.cds_7;Parent=g2.t1_2
C09SLe0001L13.1	AUGUSTUS_tom_ugs	CDS	11565	11637	.	-	1	ID=g2.t1.cds_8;Parent=g2.t1_2
C09SLe0001L13.1	AUGUSTUS_tom_ugs	CDS	13756	13865	.	-	0	ID=g2.t1.cds_9;Parent=g2.t1_2
C09SLe0001L13.1	AUGUSTUS_tom_ugs	CDS	13957	14097	.	-	0	ID=g2.t1.cds_10;Parent=g2.t1_2
C09SLe0001L13.1	AUGUSTUS_tom_ugs	start_codon	14095	14097	.	-	0	Parent=g2.t1_2
C09SLe0001L13.1	AUGUSTUS_tom_ugs	gene	17858	19145	1	+	.	ID=g3_2
C09SLe0001L13.1	AUGUSTUS_tom_ugs	transcript	17858	19145	.	+	.	ID=g3.t1_2;Parent=g3_2
C09SLe0001L13.1	AUGUSTUS_tom_ugs	start_codon	17858	17860	.	+	0	Parent=g3.t1_2
C09SLe0001L13.1	AUGUSTUS_tom_ugs	CDS	17858	18414	.	+	0	ID=g3.t1.cds_5;Parent=g3.t1_2
C09SLe0001L13.1	AUGUSTUS_tom_ugs	CDS	18495	18612	.	+	1	ID=g3.t1.cds_6;Parent=g3.t1_2
C09SLe0001L13.1	AUGUSTUS_tom_ugs	CDS	18688	18876	.	+	0	ID=g3.t1.cds_7;Parent=g3.t1_2
C09SLe0001L13.1	AUGUSTUS_tom_ugs	CDS	18975	19145	.	+	0	ID=g3.t1.cds_8;Parent=g3.t1_2
C09SLe0001L13.1	AUGUSTUS_tom_ugs	stop_codon	19143	19145	.	+	0	Parent=g3.t1_2
C09SLe0001L13.1	GenomeThreader_SGN_U_tomato	match	6030	15689	0.972	+	0	ID=SGN-U320900_alignment_1;Target=SGN-U320900 1 1280 +
C09SLe0001L13.1	GenomeThreader_SGN_U_tomato	match_part	6030	6225	0.995	+	0	ID=GTH_SGN_U_tom_match_part_1;Target=SGN-U320900 1 196 +;Parent=SGN-U320900_alignment_1
C09SLe0001L13.1	GenomeThreader_SGN_U_tomato	match_part	6908	7014	1.000	+	0	ID=GTH_SGN_U_tom_match_part_2;Target=SGN-U320900 197 303 +;Parent=SGN-U320900_alignment_1
C09SLe0001L13.1	GenomeThreader_SGN_U_tomato	match_part	7128	7184	1.000	+	0	ID=GTH_SGN_U_tom_match_part_3;Target=SGN-U320900 304 360 +;Parent=SGN-U320900_alignment_1
C09SLe0001L13.1	GenomeThreader_SGN_U_tomato	match_part	7279	7339	1.000	+	0	ID=GTH_SGN_U_tom_match_part_4;Target=SGN-U320900 361 421 +;Parent=SGN-U320900_alignment_1
C09SLe0001L13.1	GenomeThreader_SGN_U_tomato	match_part	7424	7667	1.000	+	0	ID=GTH_SGN_U_tom_match_part_5;Target=SGN-U320900 422 665 +;Parent=SGN-U320900_alignment_1
C09SLe0001L13.1	GenomeThreader_SGN_U_tomato	match_part	8508	8867	0.992	+	0	ID=GTH_SGN_U_tom_match_part_6;Target=SGN-U320900 666 1025 +;Parent=SGN-U320900_alignment_1
C09SLe0001L13.1	GenomeThreader_SGN_U_tomato	match_part	9542	9590	0.531	+	0	ID=GTH_SGN_U_tom_match_part_7;Target=SGN-U320900 1026 1074 +;Parent=SGN-U320900_alignment_1
C09SLe0001L13.1	GenomeThreader_SGN_U_tomato	match_part	10627	10659	0.606	+	0	ID=GTH_SGN_U_tom_match_part_8;Target=SGN-U320900 1075 1104 +;Parent=SGN-U320900_alignment_1
C09SLe0001L13.1	GenomeThreader_SGN_U_tomato	match_part	11124	11194	0.634	+	0	ID=GTH_SGN_U_tom_match_part_9;Target=SGN-U320900 1105 1170 +;Parent=SGN-U320900_alignment_1
C09SLe0001L13.1	GenomeThreader_SGN_U_tomato	match_part	11927	11956	0.733	+	0	ID=GTH_SGN_U_tom_match_part_10;Target=SGN-U320900 1171 1200 +;Parent=SGN-U320900_alignment_1
C09SLe0001L13.1	GenomeThreader_SGN_U_tomato	match_part	15610	15689	0.857	+	0	ID=GTH_SGN_U_tom_match_part_11;Target=SGN-U320900 1201 1280 +;Parent=SGN-U320900_alignment_1
C09SLe0001L13.1	GenomeThreader_SGN_U_tomato	gene	6030	15689	.	+	0	ID=GTH_SGN_U_tom_gene_1
C09SLe0001L13.1	GenomeThreader_SGN_U_tomato	mRNA	6030	15689	.	+	0	ID=GTH_SGN_U_tom_gene_1_AGS_1;Parent=GTH_SGN_U_tom_gene_1
C09SLe0001L13.1	GenomeThreader_SGN_U_tomato	exon	6030	6225	0.995	+	0	ID=GTH_SGN_U_tom_exon_1;Parent=GTH_SGN_U_tom_gene_1_AGS_1
C09SLe0001L13.1	GenomeThreader_SGN_U_tomato	exon	6908	7014	1.000	+	0	ID=GTH_SGN_U_tom_exon_2;Parent=GTH_SGN_U_tom_gene_1_AGS_1
C09SLe0001L13.1	GenomeThreader_SGN_U_tomato	exon	7128	7184	1.000	+	0	ID=GTH_SGN_U_tom_exon_3;Parent=GTH_SGN_U_tom_gene_1_AGS_1
C09SLe0001L13.1	GenomeThreader_SGN_U_tomato	exon	7279	7339	1.000	+	0	ID=GTH_SGN_U_tom_exon_4;Parent=GTH_SGN_U_tom_gene_1_AGS_1
C09SLe0001L13.1	GenomeThreader_SGN_U_tomato	exon	7424	7667	1.000	+	0	ID=GTH_SGN_U_tom_exon_5;Parent=GTH_SGN_U_tom_gene_1_AGS_1
C09SLe0001L13.1	GenomeThreader_SGN_U_tomato	exon	8508	8867	0.992	+	0	ID=GTH_SGN_U_tom_exon_6;Parent=GTH_SGN_U_tom_gene_1_AGS_1
C09SLe0001L13.1	GenomeThreader_SGN_U_tomato	exon	9542	9590	0.531	+	0	ID=GTH_SGN_U_tom_exon_7;Parent=GTH_SGN_U_tom_gene_1_AGS_1
C09SLe0001L13.1	GenomeThreader_SGN_U_tomato	exon	10627	10659	0.606	+	0	ID=GTH_SGN_U_tom_exon_8;Parent=GTH_SGN_U_tom_gene_1_AGS_1
C09SLe0001L13.1	GenomeThreader_SGN_U_tomato	exon	11124	11194	0.634	+	0	ID=GTH_SGN_U_tom_exon_9;Parent=GTH_SGN_U_tom_gene_1_AGS_1
C09SLe0001L13.1	GenomeThreader_SGN_U_tomato	exon	11927	11956	0.733	+	0	ID=GTH_SGN_U_tom_exon_10;Parent=GTH_SGN_U_tom_gene_1_AGS_1
C09SLe0001L13.1	GenomeThreader_SGN_U_tomato	exon	15610	15689	0.857	+	0	ID=GTH_SGN_U_tom_exon_11;Parent=GTH_SGN_U_tom_gene_1_AGS_1
C09SLe0001L13.1	AUGUSTUS_tom_pot_cdna	gene	5824	7585	1	+	.	ID=g1_4
C09SLe0001L13.1	AUGUSTUS_tom_pot_cdna	transcript	5824	7585	.	+	.	ID=g1.t1_4;Parent=g1_4
C09SLe0001L13.1	AUGUSTUS_tom_pot_cdna	start_codon	5824	5826	.	+	0	Parent=g1.t1_4
C09SLe0001L13.1	AUGUSTUS_tom_pot_cdna	CDS	5824	5901	.	+	0	ID=g1.t1.cds_17;Parent=g1.t1_4
C09SLe0001L13.1	AUGUSTUS_tom_pot_cdna	CDS	6004	6225	.	+	0	ID=g1.t1.cds_18;Parent=g1.t1_4
C09SLe0001L13.1	AUGUSTUS_tom_pot_cdna	CDS	6908	7014	.	+	0	ID=g1.t1.cds_19;Parent=g1.t1_4
C09SLe0001L13.1	AUGUSTUS_tom_pot_cdna	CDS	7128	7184	.	+	1	ID=g1.t1.cds_20;Parent=g1.t1_4
C09SLe0001L13.1	AUGUSTUS_tom_pot_cdna	CDS	7279	7339	.	+	1	ID=g1.t1.cds_21;Parent=g1.t1_4
C09SLe0001L13.1	AUGUSTUS_tom_pot_cdna	CDS	7424	7585	.	+	0	ID=g1.t1.cds_22;Parent=g1.t1_4
C09SLe0001L13.1	AUGUSTUS_tom_pot_cdna	stop_codon	7583	7585	.	+	0	Parent=g1.t1_4
C09SLe0001L13.1	AUGUSTUS_tom_pot_cdna	gene	8566	14097	1	-	.	ID=g2_3
C09SLe0001L13.1	AUGUSTUS_tom_pot_cdna	transcript	8566	14097	.	-	.	ID=g2.t1_3;Parent=g2_3
C09SLe0001L13.1	AUGUSTUS_tom_pot_cdna	stop_codon	8566	8568	.	-	0	Parent=g2.t1_3
C09SLe0001L13.1	AUGUSTUS_tom_pot_cdna	CDS	8566	8611	.	-	1	ID=g2.t1.cds_11;Parent=g2.t1_3
C09SLe0001L13.1	AUGUSTUS_tom_pot_cdna	CDS	11308	11369	.	-	0	ID=g2.t1.cds_12;Parent=g2.t1_3
C09SLe0001L13.1	AUGUSTUS_tom_pot_cdna	CDS	11565	11637	.	-	1	ID=g2.t1.cds_13;Parent=g2.t1_3
C09SLe0001L13.1	AUGUSTUS_tom_pot_cdna	CDS	13756	13865	.	-	0	ID=g2.t1.cds_14;Parent=g2.t1_3
C09SLe0001L13.1	AUGUSTUS_tom_pot_cdna	CDS	13957	14097	.	-	0	ID=g2.t1.cds_15;Parent=g2.t1_3
C09SLe0001L13.1	AUGUSTUS_tom_pot_cdna	start_codon	14095	14097	.	-	0	Parent=g2.t1_3
C09SLe0001L13.1	AUGUSTUS_tom_pot_cdna	gene	17858	19145	1	+	.	ID=g3_3
C09SLe0001L13.1	AUGUSTUS_tom_pot_cdna	transcript	17858	19145	.	+	.	ID=g3.t1_3;Parent=g3_3
C09SLe0001L13.1	AUGUSTUS_tom_pot_cdna	start_codon	17858	17860	.	+	0	Parent=g3.t1_3
C09SLe0001L13.1	AUGUSTUS_tom_pot_cdna	CDS	17858	18414	.	+	0	ID=g3.t1.cds_9;Parent=g3.t1_3
C09SLe0001L13.1	AUGUSTUS_tom_pot_cdna	CDS	18495	18612	.	+	1	ID=g3.t1.cds_10;Parent=g3.t1_3
C09SLe0001L13.1	AUGUSTUS_tom_pot_cdna	CDS	18688	18876	.	+	0	ID=g3.t1.cds_11;Parent=g3.t1_3
C09SLe0001L13.1	AUGUSTUS_tom_pot_cdna	CDS	18975	19145	.	+	0	ID=g3.t1.cds_12;Parent=g3.t1_3
C09SLe0001L13.1	AUGUSTUS_tom_pot_cdna	stop_codon	19143	19145	.	+	0	Parent=g3.t1_3
C09SLe0001L13.1	BLAST_ath_pep	match	4003	4368	115	-	0	ID=AT1G07390.1_fwd_alignment_1;blast_gaps=0;Target=AT1G07390.1 807 928 +;blast_percent_identity=51.64;blast_mismatches=59;blast_evalue=1e-24
C09SLe0001L13.1	BLAST_ath_pep	match	3991	4404	103	-	0	ID=AT1G12460.1_fwd_alignment_1;blast_gaps=0;Target=AT1G12460.1 366 503 +;blast_percent_identity=41.30;blast_mismatches=81;blast_evalue=5e-21
C09SLe0001L13.1	BLAST_ath_pep	match	4009	4422	123	-	0	ID=AT1G45616.1_fwd_alignment_1;blast_gaps=0;Target=AT1G45616.1 784 921 +;blast_percent_identity=45.65;blast_mismatches=75;blast_evalue=7e-27
C09SLe0001L13.1	BLAST_ath_pep	match	4009	4461	132	-	0	ID=AT1G47890.1_fwd_alignment_1;blast_gaps=0;Target=AT1G47890.1 798 948 +;blast_percent_identity=45.70;blast_mismatches=82;blast_evalue=1e-29
C09SLe0001L13.1	BLAST_ath_pep	match	3994	4347	104	-	0	ID=AT1G58190.1_fwd_alignment_1;blast_gaps=0;Target=AT1G58190.1 751 868 +;blast_percent_identity=43.22;blast_mismatches=67;blast_evalue=2e-21
C09SLe0001L13.1	BLAST_ath_pep	match	3994	4347	108	-	0	ID=AT1G58190.1_fwd_alignment_2;blast_gaps=0;Target=AT1G58190.1 1602 1719 +;blast_percent_identity=44.92;blast_mismatches=65;blast_evalue=1e-22
C09SLe0001L13.1	BLAST_ath_pep	match	4027	4464	106	-	0	ID=AT1G71390.1_fwd_alignment_1;blast_gaps=1;Target=AT1G71390.1 565 709 +;blast_percent_identity=43.15;blast_mismatches=83;blast_evalue=8e-22
C09SLe0001L13.1	BLAST_ath_pep	match	3994	4422	112	-	0	ID=AT1G71400.1_fwd_alignment_1;blast_gaps=1;Target=AT1G71400.1 638 778 +;blast_percent_identity=42.66;blast_mismatches=82;blast_evalue=1e-23
C09SLe0001L13.1	BLAST_ath_pep	match	3871	4365	106	-	0	ID=AT1G74170.1_fwd_alignment_1;blast_gaps=2;Target=AT1G74170.1 846 1019 +;blast_percent_identity=36.78;blast_mismatches=101;blast_evalue=6e-22
C09SLe0001L13.1	BLAST_ath_pep	match	4006	4347	112	-	0	ID=AT1G74180.1_fwd_alignment_1;blast_gaps=0;Target=AT1G74180.1 763 876 +;blast_percent_identity=50.88;blast_mismatches=56;blast_evalue=2e-23
C09SLe0001L13.1	BLAST_ath_pep	match	4000	4365	117	-	0	ID=AT1G74190.1_fwd_alignment_1;blast_gaps=0;Target=AT1G74190.1 778 899 +;blast_percent_identity=49.18;blast_mismatches=62;blast_evalue=4e-25
C09SLe0001L13.1	BLAST_ath_pep	match	4021	4368	102	-	0	ID=AT2G01950.1_fwd_alignment_1;blast_gaps=1;Target=AT2G01950.1 603 724 +;blast_percent_identity=45.08;blast_mismatches=61;blast_evalue=9e-21
C09SLe0001L13.1	BLAST_ath_pep	match	3850	4536	156	-	0	ID=AT2G15080.1_fwd_alignment_1;blast_gaps=4;Target=AT2G15080.1 743 966 +;blast_percent_identity=42.49;blast_mismatches=130;blast_evalue=5e-37
C09SLe0001L13.1	BLAST_ath_pep	match	3850	4536	156	-	0	ID=AT2G15080.2_fwd_alignment_1;blast_gaps=4;Target=AT2G15080.2 743 966 +;blast_percent_identity=42.49;blast_mismatches=130;blast_evalue=5e-37
C09SLe0001L13.1	BLAST_ath_pep	match	3844	4422	131	-	0	ID=AT2G25440.1_fwd_alignment_1;blast_gaps=3;Target=AT2G25440.1 469 662 +;blast_percent_identity=39.59;blast_mismatches=115;blast_evalue=2e-29
C09SLe0001L13.1	BLAST_ath_pep	match	3994	4368	115	-	0	ID=AT2G25470.1_fwd_alignment_1;blast_gaps=0;Target=AT2G25470.1 719 843 +;blast_percent_identity=50.40;blast_mismatches=62;blast_evalue=1e-24
C09SLe0001L13.1	BLAST_ath_pep	match	3841	4449	144	-	0	ID=AT2G32660.1_fwd_alignment_1;blast_gaps=3;Target=AT2G32660.1 378 577 +;blast_percent_identity=43.20;blast_mismatches=114;blast_evalue=3e-33
C09SLe0001L13.1	BLAST_ath_pep	match	3994	4692	141	-	0	ID=AT2G32680.1_fwd_alignment_1;blast_gaps=4;Target=AT2G32680.1 593 822 +;blast_percent_identity=38.30;blast_mismatches=143;blast_evalue=2e-32
C09SLe0001L13.1	BLAST_ath_pep	match	3844	4692	139	-	0	ID=AT2G33020.1_fwd_alignment_1;blast_gaps=7;Target=AT2G33020.1 580 860 +;blast_percent_identity=34.60;blast_mismatches=183;blast_evalue=1e-31
C09SLe0001L13.1	BLAST_ath_pep	match	4009	4422	135	-	0	ID=AT2G33030.1_fwd_alignment_1;blast_gaps=0;Target=AT2G33030.1 15 152 +;blast_percent_identity=51.45;blast_mismatches=67;blast_evalue=1e-30
C09SLe0001L13.1	BLAST_ath_pep	match	3844	4449	146	-	0	ID=AT2G33050.1_fwd_alignment_1;blast_gaps=3;Target=AT2G33050.1 563 763 +;blast_percent_identity=42.16;blast_mismatches=116;blast_evalue=7e-34
C09SLe0001L13.1	BLAST_ath_pep	match	4009	4449	140	-	0	ID=AT2G33060.1_fwd_alignment_1;blast_gaps=0;Target=AT2G33060.1 573 719 +;blast_percent_identity=48.98;blast_mismatches=75;blast_evalue=5e-32
C09SLe0001L13.1	BLAST_ath_pep	match	4027	4422	112	-	0	ID=AT3G05360.1_fwd_alignment_1;blast_gaps=0;Target=AT3G05360.1 578 709 +;blast_percent_identity=44.70;blast_mismatches=73;blast_evalue=2e-23
C09SLe0001L13.1	BLAST_ath_pep	match	4027	4449	113	-	0	ID=AT3G05370.1_fwd_alignment_1;blast_gaps=0;Target=AT3G05370.1 638 778 +;blast_percent_identity=43.97;blast_mismatches=79;blast_evalue=5e-24
C09SLe0001L13.1	BLAST_ath_pep	match	3850	4476	148	-	0	ID=AT3G05650.1_fwd_alignment_1;blast_gaps=4;Target=AT3G05650.1 642 848 +;blast_percent_identity=42.72;blast_mismatches=118;blast_evalue=1e-34
C09SLe0001L13.1	BLAST_ath_pep	match	3844	4425	152	-	0	ID=AT3G05660.1_fwd_alignment_1;blast_gaps=4;Target=AT3G05660.1 666 857 +;blast_percent_identity=45.18;blast_mismatches=105;blast_evalue=8e-36
C09SLe0001L13.1	BLAST_ath_pep	match	13758	13865	58.9	-	0	ID=AT3G08960.1_fwd_alignment_1;blast_gaps=0;Target=AT3G08960.1 48 83 +;blast_percent_identity=72.22;blast_mismatches=10;blast_evalue=6e-26
C09SLe0001L13.1	BLAST_ath_pep	match	13945	14097	82.0	-	0	ID=AT3G08960.1_fwd_alignment_2;blast_gaps=0;Target=AT3G08960.1 1 51 +;blast_percent_identity=72.55;blast_mismatches=14;blast_evalue=6e-26
C09SLe0001L13.1	BLAST_ath_pep	match	4006	4542	144	-	0	ID=AT3G11010.1_fwd_alignment_1;blast_gaps=1;Target=AT3G11010.1 650 821 +;blast_percent_identity=44.13;blast_mismatches=100;blast_evalue=2e-33
C09SLe0001L13.1	BLAST_ath_pep	match	3850	4455	148	-	0	ID=AT3G11080.1_fwd_alignment_1;blast_gaps=3;Target=AT3G11080.1 723 926 +;blast_percent_identity=42.72;blast_mismatches=114;blast_evalue=1e-34
C09SLe0001L13.1	BLAST_ath_pep	match	4030	4416	123	-	0	ID=AT3G23010.1_fwd_alignment_1;blast_gaps=0;Target=AT3G23010.1 410 538 +;blast_percent_identity=51.94;blast_mismatches=62;blast_evalue=5e-27
C09SLe0001L13.1	BLAST_ath_pep	match	4027	4422	116	-	0	ID=AT3G23110.1_fwd_alignment_1;blast_gaps=0;Target=AT3G23110.1 628 759 +;blast_percent_identity=48.48;blast_mismatches=68;blast_evalue=6e-25
C09SLe0001L13.1	BLAST_ath_pep	match	3991	4473	122	-	0	ID=AT3G23120.1_fwd_alignment_1;blast_gaps=2;Target=AT3G23120.1 566 742 +;blast_percent_identity=42.94;blast_mismatches=85;blast_evalue=9e-27
C09SLe0001L13.1	BLAST_ath_pep	match	4009	4416	132	-	0	ID=AT3G24900.1_fwd_alignment_1;blast_gaps=0;Target=AT3G24900.1 684 819 +;blast_percent_identity=49.26;blast_mismatches=69;blast_evalue=1e-29
C09SLe0001L13.1	BLAST_ath_pep	match	4009	4443	135	-	0	ID=AT3G24982.1_fwd_alignment_1;blast_gaps=0;Target=AT3G24982.1 706 850 +;blast_percent_identity=48.97;blast_mismatches=74;blast_evalue=1e-30
C09SLe0001L13.1	BLAST_ath_pep	match	3865	4428	130	-	0	ID=AT3G25010.1_fwd_alignment_1;blast_gaps=3;Target=AT3G25010.1 679 869 +;blast_percent_identity=41.45;blast_mismatches=108;blast_evalue=4e-29
C09SLe0001L13.1	BLAST_ath_pep	match	4009	4455	133	-	0	ID=AT3G25020.1_fwd_alignment_1;blast_gaps=0;Target=AT3G25020.1 669 817 +;blast_percent_identity=46.98;blast_mismatches=79;blast_evalue=5e-30
C09SLe0001L13.1	BLAST_ath_pep	match	4000	4347	108	-	0	ID=AT3G28040.1_fwd_alignment_1;blast_gaps=0;Target=AT3G28040.1 492 607 +;blast_percent_identity=46.55;blast_mismatches=62;blast_evalue=2e-22
C09SLe0001L13.1	BLAST_ath_pep	match	3844	4428	149	-	0	ID=AT3G28890.1_fwd_alignment_1;blast_gaps=3;Target=AT3G28890.1 498 695 +;blast_percent_identity=43.00;blast_mismatches=109;blast_evalue=7e-35
C09SLe0001L13.1	BLAST_ath_pep	match	4009	4347	106	-	0	ID=AT3G53240.1_fwd_alignment_1;blast_gaps=0;Target=AT3G53240.1 707 819 +;blast_percent_identity=48.67;blast_mismatches=58;blast_evalue=6e-22
C09SLe0001L13.1	BLAST_ath_pep	match	4009	4359	104	-	0	ID=AT4G04220.1_fwd_alignment_1;blast_gaps=1;Target=AT4G04220.1 643 760 +;blast_percent_identity=45.76;blast_mismatches=63;blast_evalue=2e-21
C09SLe0001L13.1	BLAST_ath_pep	match	3883	4425	132	-	0	ID=AT4G13810.1_fwd_alignment_1;blast_gaps=2;Target=AT4G13810.1 541 721 +;blast_percent_identity=42.31;blast_mismatches=104;blast_evalue=1e-29
C09SLe0001L13.1	BLAST_ath_pep	match	3904	4476	134	-	0	ID=AT4G13880.1_fwd_alignment_1;blast_gaps=3;Target=AT4G13880.1 519 712 +;blast_percent_identity=40.61;blast_mismatches=111;blast_evalue=3e-30
C09SLe0001L13.1	BLAST_ath_pep	match	3850	4476	136	-	0	ID=AT4G13920.1_fwd_alignment_1;blast_gaps=4;Target=AT4G13920.1 677 878 +;blast_percent_identity=38.86;blast_mismatches=127;blast_evalue=7e-31
C09SLe0001L13.1	BLAST_ath_pep	match	16826	17569	321	+	0	ID=AT4G33070.1_fwd_alignment_1;blast_gaps=2;Target=AT4G33070.1 8 232 +;blast_percent_identity=71.83;blast_mismatches=67;blast_evalue=2e-86
C09SLe0001L13.1	BLAST_ath_pep	match	18496	18879	189	+	0	ID=AT4G33070.1_fwd_alignment_2;blast_gaps=1;Target=AT4G33070.1 450 552 +;blast_percent_identity=74.22;blast_mismatches=33;blast_evalue=4e-169
C09SLe0001L13.1	BLAST_ath_pep	match	17762	18415	354	+	0	ID=AT4G33070.1_fwd_alignment_3;blast_gaps=0;Target=AT4G33070.1 232 449 +;blast_percent_identity=77.98;blast_mismatches=48;blast_evalue=4e-169
C09SLe0001L13.1	BLAST_ath_pep	match	18984	19142	97.8	+	0	ID=AT4G33070.1_fwd_alignment_4;blast_gaps=0;Target=AT4G33070.1 555 607 +;blast_percent_identity=88.68;blast_mismatches=6;blast_evalue=4e-169
C09SLe0001L13.1	BLAST_ath_pep	match	4000	4347	104	-	0	ID=AT4G39400.1_fwd_alignment_1;blast_gaps=0;Target=AT4G39400.1 659 774 +;blast_percent_identity=45.69;blast_mismatches=63;blast_evalue=3e-21
C09SLe0001L13.1	BLAST_ath_pep	match	16826	17569	322	+	0	ID=AT5G01320.1_fwd_alignment_1;blast_gaps=1;Target=AT5G01320.1 8 228 +;blast_percent_identity=71.37;blast_mismatches=71;blast_evalue=7e-87
C09SLe0001L13.1	BLAST_ath_pep	match	18496	18879	190	+	0	ID=AT5G01320.1_fwd_alignment_2;blast_gaps=1;Target=AT5G01320.1 446 548 +;blast_percent_identity=74.22;blast_mismatches=33;blast_evalue=9e-165
C09SLe0001L13.1	BLAST_ath_pep	match	17762	18415	342	+	0	ID=AT5G01320.1_fwd_alignment_3;blast_gaps=0;Target=AT5G01320.1 228 445 +;blast_percent_identity=77.06;blast_mismatches=50;blast_evalue=9e-165
C09SLe0001L13.1	BLAST_ath_pep	match	18984	19142	94.4	+	0	ID=AT5G01320.1_fwd_alignment_4;blast_gaps=0;Target=AT5G01320.1 551 603 +;blast_percent_identity=86.79;blast_mismatches=7;blast_evalue=9e-165
C09SLe0001L13.1	BLAST_ath_pep	match	16853	17569	287	+	0	ID=AT5G01330.1_fwd_alignment_1;blast_gaps=2;Target=AT5G01330.1 2 217 +;blast_percent_identity=66.67;blast_mismatches=77;blast_evalue=2e-76
C09SLe0001L13.1	BLAST_ath_pep	match	18496	18879	191	+	0	ID=AT5G01330.1_fwd_alignment_2;blast_gaps=1;Target=AT5G01330.1 435 537 +;blast_percent_identity=74.22;blast_mismatches=33;blast_evalue=3e-163
C09SLe0001L13.1	BLAST_ath_pep	match	17762	18415	336	+	0	ID=AT5G01330.1_fwd_alignment_3;blast_gaps=0;Target=AT5G01330.1 217 434 +;blast_percent_identity=76.61;blast_mismatches=51;blast_evalue=3e-163
C09SLe0001L13.1	BLAST_ath_pep	match	18984	19142	93.2	+	0	ID=AT5G01330.1_fwd_alignment_4;blast_gaps=0;Target=AT5G01330.1 540 592 +;blast_percent_identity=86.79;blast_mismatches=7;blast_evalue=3e-163
C09SLe0001L13.1	BLAST_ath_pep	match	4009	4425	136	-	0	ID=AT5G25910.1_fwd_alignment_1;blast_gaps=0;Target=AT5G25910.1 605 743 +;blast_percent_identity=49.64;blast_mismatches=70;blast_evalue=6e-31
C09SLe0001L13.1	BLAST_ath_pep	match	4006	4455	143	-	0	ID=AT5G27060.1_fwd_alignment_1;blast_gaps=0;Target=AT5G27060.1 735 884 +;blast_percent_identity=49.33;blast_mismatches=76;blast_evalue=5e-33
C09SLe0001L13.1	BLAST_ath_pep	match	3862	4437	148	-	0	ID=AT5G40170.1_fwd_alignment_1;blast_gaps=2;Target=AT5G40170.1 589 784 +;blast_percent_identity=45.41;blast_mismatches=103;blast_evalue=2e-34
C09SLe0001L13.1	BLAST_ath_pep	match	4003	4347	112	-	0	ID=AT5G49290.1_fwd_alignment_1;blast_gaps=0;Target=AT5G49290.1 704 818 +;blast_percent_identity=51.30;blast_mismatches=56;blast_evalue=9e-24
C09SLe0001L13.1	BLAST_ath_pep	match	16826	18415	634	+	0	ID=AT5G54960.1_fwd_alignment_1;blast_gaps=5;Target=AT5G54960.1 8 449 +;blast_percent_identity=66.92;blast_mismatches=172;blast_evalue=0.0
C09SLe0001L13.1	BLAST_ath_pep	match	18496	18879	191	+	0	ID=AT5G54960.1_fwd_alignment_2;blast_gaps=1;Target=AT5G54960.1 450 552 +;blast_percent_identity=72.66;blast_mismatches=35;blast_evalue=0.0
C09SLe0001L13.1	BLAST_ath_pep	match	18975	19142	94.4	+	0	ID=AT5G54960.1_fwd_alignment_3;blast_gaps=0;Target=AT5G54960.1 552 607 +;blast_percent_identity=80.36;blast_mismatches=11;blast_evalue=0.0