GeneSeqer. Version of March 12, 2006. Date run: Tue Jul 25 13:58:35 2006 (Bayesian) Splice site model (species): Arabidopsis thaliana Fast search parameters: MinMatchLen 16, MinQualityHSP 30, MinQualityCHAIN 50. Total number of ESTs: 175665 Total sequence length: 93213537 Minimum sequence length: 89 Maximum sequence length: 1082 Length distribution (number of sequences of specified length): < 100: 1 < 200: 2188 < 300: 8544 < 400: 20465 < 500: 39499 < 600: 49432 < 700: 32872 < 800: 19308 < 900: 3155 < 1000: 193 >=1000: 8 Input file : /tmp/bac-submission-temp-7AjRo/C10HBa0111D09/C10HBa0111D09.seq.screen ________________________________________________________________________________ Sequence 1: C10HBa0111D09.1, from 1 to 148613, both strands analyzed. ... started at: Tue Jul 25 14:23:02 2006 EST library file: /tmp/cxgn-bacpublish-resources-VQ1ezl/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 7 ... matches indexed, elapsed seconds = 7 HitsTableSize = 34 EST library file: /tmp/cxgn-bacpublish-resources-VQ1ezl/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 7 ... matches indexed, elapsed seconds = 7 HitsTableSize = 85 ******************************************************************************** EST sequence 51 +strand 234 n (File: SGN-E270415+) 1 TCTGAAGGGG GATCATTGTA TGTACCTACT ACCAAAAAGG AGCTTGTGCT TATGGAAGCA 61 GGTGTAGATA TGATCATGTT AAACTGTCTC GATCACAACC TTCAGCTCAG TCTTCAGCAC 121 AACCTCAACA ATGTCTGCTT TCAAGTTCTA CGCCTATCAA TGTGTCTCCT GCAATGGGTG 181 CACATAATGC ATATGTTCTG CCAGGCATTT GTACTGAGTA TTTAGCTTCA AGCA Predicted gene structure (within gDNA segment 6879 to 5283): Exon 1 6250 6234 ( 17 n); cDNA 1 17 ( 17 n); score: 1.000 Intron 1 6233 6110 ( 124 n); Pd: 0.696 (s: 0), Pa: 1.000 (s: 1.00) Exon 2 6109 5893 ( 217 n); cDNA 18 234 ( 217 n); score: 0.991 MATCH C10HBa0111D09.1- SGN-E270415+ 0.991 234 1.000 C PGS_C10HBa0111D09.1-_SGN-E270415+ (6250 6234,6109 5893) Alignment (genomic DNA sequence = upper lines): TCTGAAGGGG GATCATTGTG AGTTTTCACA TGATTGGAAC AATCCTTCTA ATAATGTAAC 6191 |||||||||| ||||||| TCTGAAGGGG GATCATT... .......... .......... .......... .......... 17 GTTCTTGACA ATTTAGTTTG ATGATCAAGG ATTAATTGAT CCTTTACTTT CTGATTGTTT 6131 .......... .......... .......... .......... .......... .......... 17 TCCCTTGGAT CATTGTTGCA GGTATGTACC TACTACCAAA AAGGAGCTTG TGCTTATGGA 6071 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .GTATGTACC TACTACCAAA AAGGAGCTTG TGCTTATGGA 56 AGCAGGTGTA GATATGATCA TGTTAAACTG TCTCGATCAC AACCTTCAGC TCAGTCTTCA 6011 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAGGTGTA GATATGATCA TGTTAAACTG TCTCGATCAC AACCTTCAGC TCAGTCTTCA 116 GCACAACCTC AACAATGTCT GCTTTCAAGT TCTACGCCTA TCAATGTGTC TCCTGGAATG 5951 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| GCACAACCTC AACAATGTCT GCTTTCAAGT TCTACGCCTA TCAATGTGTC TCCTGCAATG 176 GGTGCACATA ATGCAGATGT TCTGCCAGGC ATTTGTACTG AGTATTTAGC TTCAAGCA 5893 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||| GGTGCACATA ATGCATATGT TCTGCCAGGC ATTTGTACTG AGTATTTAGC TTCAAGCA 234 hqPGS_C10HBa0111D09.1-_SGN-E270415+ (6250 6234,6109 5893) ******************************************************************************** EST sequence 23 +strand 517 n (File: SGN-E243174+) 1 ACACTTAGAA TCATGAGTTA CTACAACCCT AACATCAAGG AATAATATCA CAAGAATGAA 61 TAAAAGTTAA ACATATCATA ATAAGCAATA CAACTACTCA CAAGTTCTTA TTAAGTTAGC 121 AAGTGCAATG ACCAAGTAAA GCCCCATAAC CTTACTCAAT CAAGTATTCT CAACAAGAAA 181 AAATTACAAA TGTCCAACTT CACATTTCAT GGCATCTAGG CTTACATTTC ATCTTATATT 241 ATCAATATAA CCCAAGGCAT ATTCATAAAT GAACTGATCA ACATATATTG TAAACAATAT 301 GACATGACCA TCATATATCA TCATAGCATA AACATATAAG AACCTCCTCC TAAAACTCCC 361 TTCAAGACTA ACTAGTGCAA TGTCTAGGTA GAGTCCCATA CCCCTACCTA GACTAAGCTA 421 GACCCCTTAG GTTATCAAAG TTAGAGTTCA AATCCTTTAA TTTGTTTTAA CTTTTAGGAA 481 CATCTTGCCC TAACCGACAT AGACCACATG AGCTACT Predicted gene structure (within gDNA segment 16753 to 22043): Exon 1 20889 21413 ( 525 n); cDNA 3 515 ( 513 n); score: 0.833 MATCH C10HBa0111D09.1+ SGN-E243174+ 0.833 525 1.015 C PGS_C10HBa0111D09.1+_SGN-E243174+ (20889 21413) Alignment (genomic DNA sequence = upper lines): ACTTGAAACC ATGATTTACT ACAACCCTAT CACCAAGGAA AAATATCACA AGAATGAATA 20948 |||| || | |||| ||||| ||||||||| || ||||||| ||||||||| |||||||||| ACTTAGAATC ATGAGTTACT ACAACCCTAA CATCAAGGAA TAATATCACA AGAATGAATA 62 AGAGTCAATC ATATCATGAT -AGAGAGACA ACTATTCATG AATCCTTATC AACTCAACAA 21007 | ||| || | ||||||| || || | ||| |||| ||| | | ||||| || | | ||| AAAGTTAAAC ATATCATAAT AAGCAATACA ACTACTCACA AGTTCTTATT AAGTTAGCAA 122 GTGCAATAAC CAAGCAAAGC CTCATAACCT TACTCAATCA AGTATCCTCA AAAAGAAACC 21067 ||||||| || |||| ||||| | |||||||| |||||||||| ||||| |||| | |||||| GTGCAATGAC CAAGTAAAGC CCCATAACCT TACTCAATCA AGTATTCTCA ACAAGAAAAA 182 ATGACCAATG TCCAACTTTA CCTAACATAG CATTTAGGTT TACATTTTAT CATATATTAA 21127 || || |||| |||||||| | | | ||| | ||| |||| | ||||||| || | ||||||| ATTACAAATG TCCAACTTCA CATTTCATGG CATCTAGGCT TACATTTCAT CTTATATTAT 242 CATTATGACC CAAGGCATAC TCATTAGTAA ACTAATTAAT ATATAATATC AACAATGTGC 21187 || ||| ||| ||||||||| |||| | | | ||| || || ||||| | | ||||| | CAATATAACC CAAGGCATAT TCATAAATGA ACTGATCAAC ATATATTGTA AACAA--T-- 298 CATAGTAATC ATATATACAT AATATATCAT CATAACATAA ACATATATAA AAACCTCCTT 21247 || | | | || | ||| ||||||||| |||| ||||| || |||||| |||||||| -AT-G--A-C AT-GA-CCAT CATATATCAT CATAGCATAA AC--ATATAA GAACCTCCTC 349 CTAAGACTCC CCTCAAGGCT AACTAGTGAA ATGTTTAGGT AGAGCCCCAT ACCCCTACCT 21307 |||| ||||| | ||||| || |||||||| | |||| ||||| |||| ||||| |||||||||| CTAAAACTCC CTTCAAGACT AACTAGTGCA ATGTCTAGGT AGAGTCCCAT ACCCCTACCT 409 AGATTAAGCT AGACCCCTTA GGTTATCCAA GTTAGAGTTC AAGTCCTTTA ATTCGTTTTA 21367 ||| |||||| |||||||||| ||||||| || |||||||||| || ||||||| ||| |||||| AGACTAAGCT AGACCCCTTA GGTTATCAAA GTTAGAGTTC AAATCCTTTA ATTTGTTTTA 469 CCTTTTGGGA ACATCTTGCC CTAACCGACA TAGACCACAT GAGCTA 21413 ||||| ||| |||||||||| |||||||||| |||||||||| |||||| ACTTTTAGGA ACATCTTGCC CTAACCGACA TAGACCACAT GAGCTA 515 hqPGS_C10HBa0111D09.1+_SGN-E243174+ (20889 21413) ******************************************************************************** EST sequence 100 +strand 614 n (File: SGN-E349363+) 1 GTTAACCTTA CCAGAGGGTA AAAGTAGGTT GTGTATTGTG ATGCATCCTA TGTGGGTTTA 61 GGGTGTGCTT ATGCAACAAG GGAAGCTGAT AGCCTATTCT TCTAGGCAAC TTAAGGTATA 121 TGAGAGAAAC TATCCCACTA ATGACCTTGA GTTAGCGGCT GTGGTATTTG CTTTGAAAAA 181 TATGGAGGCA TTATTTGTAC GGTGTACATG TTGATGTCTT TACTGACCAT AAGAGTCTCC 241 ATTATGTGTT CACCCAAAGG GATTTGAATC TCTGGCAAAG AAGGTGGTTA GAGTTGTTGA 301 AAGATTACGA TATGAGTGTC CTCTATCACC CCGTCAAGGC GAATGTTGTT GCGGATGCCC 361 TAAGTCGCTA TACTATGGGT AGTGTATCCC ACAGTGATGA AGCCAAGAAA TACCTAGTTA 421 ATGAAGTTCA TAGGTTGTCT AGATTGGTTG GAAGGTTCTC CAAATGGTGG TTATATGGTC 481 CATCATAATT TCAAGTCATC TTTAGTGGTT GAGGTGAAGT GCAAACAACA CCTTGATCAA 541 ACATTAATGG AGTTGAAAGA ATTGGTTCTC GGCCAGTTAA ATGAGTCATT CTCCTTAGGG 601 GGGATGGTTT GTTG Predicted gene structure (within gDNA segment 29539 to 24117): Exon 1 25822 25197 ( 626 n); cDNA 1 611 ( 611 n); score: 0.816 MATCH C10HBa0111D09.1- SGN-E349363+ 0.816 626 1.020 C PGS_C10HBa0111D09.1-_SGN-E349363+ (25822 25197) Alignment (genomic DNA sequence = upper lines): GTTGACACTA TCGGAGGGTA CGAAGGGTTT TGTTGTGTAT TGTGACGCAT CCCGAGTGGG 25763 ||| || || | ||||||| || | | ||||||||| ||||| |||| || ||||| GTTAACCTTA CCAGAGGGTA --AAA-G-TA GGTTGTGTAT TGTGATGCAT CCTATGTGGG 56 TTTGCGGTAT GTGCTTATGC AACACGGGAA AGTCATAGCC TATGCCTCTA GGAAACTTAA 25703 ||| || | |||||||||| |||| ||||| | |||||| ||| | |||| || ||||||| TTTAGGG--T GTGCTTATGC AACAAGGGAA GCTGATAGCC TATTCTTCTA GGCAACTTAA 114 GGTACATGAG AGAAACTATC CCACTCATGA CCTTGAGTTA GAAGTTGTGG TATTTGCTTT 25643 |||| ||||| |||||||||| ||||| |||| |||||||||| | | ||||| |||||||||| GGTATATGAG AGAAACTATC CCACTAATGA CCTTGAGTTA GCGGCTGTGG TATTTGCTTT 174 G-AAAATTTG GAGGCATTAC TTTTATGGGG TTCATGTGGA TGTCTTTACT GATCACAAGA 25584 | ||||| || ||||||||| || || || | | ||||| || |||||||||| || || |||| GAAAAATATG GAGGCATTAT TTGTACGGTG TACATGTTGA TGTCTTTACT GACCATAAGA 234 GTCTCCAATA TATGTTTACC TAGAAAGGAG TTGAATCTCT GACATAGTTG GTGGCTAGAG 25524 ||||||| || | |||| ||| | || ||| |||||||||| | || || | |||| ||||| GTCTCCATTA TGTGTTCACC CA-AAGGGAT TTGAATCTCT GGCAAAGAAG GTGGTTAGAG 293 TTGTTGAAAG ATTATTATAT GAGTGTCCTT TATCACCCCG GCAAGGATAA TGTGGTTGCG 25464 |||||||||| |||| |||| ||||||||| |||||||||| ||||| || ||| |||||| TTGTTGAAAG ATTACGATAT GAGTGTCCTC TATCACCCCG TCAAGGCGAA TGTTGTTGCG 353 GATGCCCTAA GTCG-TATGA CAATGGGTAG TGTATCCCAC CTTGACGAAG ACAAGAGAAA 25405 |||||||||| |||| ||| | | |||||||| |||||||||| ||| |||| ||||| | | GATGCCCTAA GTCGCTAT-A CTATGGGTAG TGTATCCCAC AGTGATGAAG CCAAGAAATA 412 CCTAGCAAGG GAAGTACATA GGTTGGCTAG GTTGGGGGTG AGGTTGAAAA GTTCTCCAGA 25345 ||||| | ||||| |||| ||||| ||| | | | ||||| || |||||||| | CCTAGTTAAT GAAGTTCATA GGTTGTCTA- GAT-----T- -GGTTGGAAG GTTCTCCAAA 464 TGGAGGGGCT ATAGTTCATC ATAACTCCGA GTCAACTCTA GTGGTTGAGG TGAAGTCCAA 25285 ||| || | || || |||| |||| | | | |||| || || |||||||||| |||||| ||| TGGTGGTTAT ATGGTCCATC ATAATTTCAA GTCATCTTTA GTGGTTGAGG TGAAGTGCAA 524 ACAACACCTT GATCTAGCCT TAATGGAGTT GAAAGAATCG GTTCTCGGCA AGTTGAATGA 25225 |||||||||| |||| | | | |||||||||| |||||||| | ||||||||| |||| ||||| ACAACACCTT GATCAAACAT TAATGGAGTT GAAAGAATTG GTTCTCGGCC AGTTAAATGA 584 ATCATTATCC TTAGGGGAAG ATGATGTG 25197 ||||| ||| ||||||| | ||| | || GTCATTCTCC TTAGGGG-GG ATGGTTTG 611 hqPGS_C10HBa0111D09.1-_SGN-E349363+ (25822 25197) ******************************************************************************** EST sequence 85 -strand 534 n (File: SGN-E319785-) 1 GAGTGAGTTG TGAAGCGACC TTCCATACAA TTCCTTCAAA AACACATAAG AGATCCTTTA 61 TATTATCTAG GGTAAGATCA TTCAACCTTG ATGAAATAAC ATTATATAAT ATGACATTCT 121 CCTCACAAAG ATTATCAAAA GACTTACTTA AGTAATTCAA GAAGAGAAGC CCATACATCC 181 TCTCAAAGAT TACCTAAATA ATCCTTTAGA CTACCTAAAT TAATATCATG TCTAGTTTAG 241 CAACCAACCT TTCTCTCTAG AGTCATTCTT AAGACTTCCC TAGGTAAGAC ATAAAAAGAC 301 CATCTTTTAT TCCCCCTTCA CACCTTAACT AGACAACCCT TAAACTACTC TAGATAAGCG 361 ATTATTCATT TACATGCTTT CTAACTTGAG TCATTATCTT TATTAGTCCA TTTCATCAAC 421 ATATCCACAT TCAAGTAATT GTCTTGTAGA AGACCTAGGG ACTCACTCAC TAACATATTC 481 AAAACCTAAT CATGCAATGT CTAGATAGCG TCCCATACCA CCACATAAAC TTTA Predicted gene structure (within gDNA segment 41783 to 46195): Exon 1 43717 44252 ( 536 n); cDNA 1 532 ( 532 n); score: 0.784 MATCH C10HBa0111D09.1+ SGN-E319785- 0.784 536 1.004 C PGS_C10HBa0111D09.1+_SGN-E319785- (43717 44252) Alignment (genomic DNA sequence = upper lines): GAGTGAGTTG TGAAGCAACT ACCTATACAA TCCCTTCACA CACACCTAAG AGATCCTTTT 43776 |||||||||| |||||| || | |||||| | |||||| | |||| |||| ||||||||| GAGTGAGTTG TGAAGCGACC TTCCATACAA TTCCTTCAAA AACACATAAG AGATCCTTTA 60 GAATACCTA- -GTAAGATTA TTCTCACTTC ATACAATAAC ATATATAAAA TATGACATTC 43834 | || ||| ||||||| | ||| ||| || |||||| || |||| || |||||||||| TATTATCTAG GGTAAGATCA TTCAACCTTG ATGAAATAAC AT-TATATAA TATGACATTC 119 TCTTCACAAA GGTTATCAAA AGACTTAATT AAGTAATTCA AGAAGAGAAC GCCCATATAC 43894 || ||||||| | |||||||| ||||||| || |||||||||| ||||||||| ||||||| | TCCTCACAAA GATTATCAAA AGACTTACTT AAGTAATTCA AGAAGAGAA- GCCCATACAT 178 CCTCTCCAAG ATTACCTAAA TAATCTTTAT GATGTCCTAA GTTTAGATTA TGTCTACTTA 43954 |||||| ||| |||||||||| ||||| || || ||||| || | || | |||||| || CCTCTCAAAG ATTACCTAAA TAATCCTTTA GACTACCTAA ATTAATATCA TGTCTAGTTT 238 ATCCACCAAA TTTCGTATCT AGAGTCATTC TTAAG-CTTA CCTA-G--AG ACATGAAGTG 44010 | | ||||| || | ||| |||||||||| ||||| ||| |||| | || |||| || | AGCAACCAAC CTTTCTCTCT AGAGTCATTC TTAAGACTTC CCTAGGTAAG ACATAAAAAG 298 CCCAT-TCAT ATACCTTCTT CGCACCTTAA CTAGGCAACC CTTAAACTAC TCTAGGTAAG 44069 |||| | | || || ||| | |||||||| |||| ||||| |||||||||| ||||| |||| ACCATCTTTT ATTCCCCCTT CACACCTTAA CTAGACAACC CTTAAACTAC TCTAGATAAG 358 TACTTATTCA TTTACATGCT TTCTAAATTA TGTCCTTATC TTCATTATCT CATTTAAGAT 44129 ||||||| |||||||||| |||||| || ||| ||||| | |||| | | | | | CGATTATTCA TTTACATGCT TTCTAACTTG AGTCATTATC -T--TTAT-T -AGTCCA-TT 412 TCATTCAACA TATAAGGACC TTCAAGTAAT AGTATTGGAG AAGACCTAGG GACTCACTCC 44189 ||| |||||| ||| || |||||||||| || ||| || |||||||||| |||||||| | TCA-TCAACA TAT--CCACA TTCAAGTAAT TGTCTTGTAG AAGACCTAGG GACTCACT-C 468 ACTAACATCT TC-AAAGCTT ATTGTGCAAT GTCTAGATAG CATCCTATAC CACCACCTAA 44248 |||||||| | || ||| || || |||||| |||||||||| | ||| |||| |||||| ||| ACTAACATAT TCAAAACCTA ATCATGCAAT GTCTAGATAG CGTCCCATAC CACCACATAA 528 ACTT 44252 |||| ACTT 532 hqPGS_C10HBa0111D09.1+_SGN-E319785- (43717 44252) ******************************************************************************** EST sequence 95 -strand 847 n (File: SGN-E543334-) 1 AGTTAAGTTG GAAAGGGGCA TAGGAATGGT CACTTTATAT CTTACCTAGA TGAGTCTTAA 61 GAATGACTCT AATTAGGGAA GATGTTGATT ATGTGGACAT GATCCGAACT TGGGAAGTCA 121 TAAGGATTAT TTAGGTAGTC TTGAAGAGGT CAATCATAGA CTTTATCTTC TTGACCTACT 181 TAAGTAAGTC TTTTGATAGC CTTTGATGAG GAAAGGTCAT AGTGTCTATA TGTTGATATG 241 TTTGATGCCT TGAAGTGTGT ATGTGACTCA TTATATGTAA TCCTAAGGAT CGTTTTGGCA 301 CATTTAGAGA GGGTGTATGG ACGGTCTCTC TTTGTGTGAC GTAAGTGAAT CTTAGGATGA 361 ATTTAAGTGA GGAAATTACA TGCTATAAGT ATCTTATGTG TTTCCAAATT GATTTTTGAT 421 GTTATTATGA TTAAATATGT TTTGAAAAAT GAAAAGATGC ATATTTCCGA TAAAGTCCGT 481 TTTCATGATT TTTATGTATA ATGCCATACT TAGTATATGT GGTTGTACTA ACTCCATATT 541 TTTATCTATC TATATAGTTC TTGGTAGGTG AGGAGTTTTG AGAAGTGAAG ACTTGGACTT 601 AGAATATCGT TCAAGAGAAG TTGAAGTATG TCCTTACTTG ACTCAAGGGC ATATATGTCT 661 TTTATGTTTT CATTCAAAGT ATTGTAATAG ACTAAGTATT TCTATATTCG TATTTTGAAG 721 TATGGGCTGT GTCCCAAGTA TTCTTGTGTC TTAAGATTAT GAGATTGAGA CTTAGTATTT 781 CCTATTACTT TTATATGAAA GAGATTGAAG ACTAAAAAAA AAAAAAAAAA AACTCGAGGG 841 GGGCCCG Predicted gene structure (within gDNA segment 69737 to 77634): Exon 1 75581 75815 ( 235 n); cDNA 5 237 ( 233 n); score: 0.719 Intron 1 75816 75953 ( 138 n); Pd: 0.000 (s: 0.70), Pa: 0.000 (s: 0.78) Exon 2 75954 76107 ( 154 n); cDNA 238 389 ( 152 n); score: 0.802 Intron 2 76108 76218 ( 111 n); Pd: 0.000 (s: 0.80), Pa: 0.000 (s: 0.76) Exon 3 76219 76599 ( 381 n); cDNA 390 776 ( 387 n); score: 0.801 PPA cDNA 814 833 MATCH C10HBa0111D09.1+ SGN-E543334- 0.776 770 0.909 C PGS_C10HBa0111D09.1+_SGN-E543334- (75581 75815,75954 76107,76219 76599) Alignment (genomic DNA sequence = upper lines): AAGTGTGAAG ATGGTATAAG AGATGATCTC TTCATGTCTT ATCTTTGAAA GTCTTGAAGA 75640 |||| ||| || ||| | | ||| || | || || |||| | || | ||||| | | AAGTTGGAAA GGGGCATAGG A-ATGGTCAC TTTATATCTT ACCTAGATGA GTCTTAAGAA 63 TGACTATAGT TAGGGAAGAT GTTTGGTGTT GTGGACCTAA TCTAAGCCTT AGGTAGTCTT 75700 ||||| || | |||||||||| | ||| | | |||||| | | || | ||| || |||| | TGACTCTAAT TAGGGAAGAT G-TTGATTAT GTGGACATGA TCCGA-ACTT GGGAAGTCAT 121 AAGGACTATT TAGGTTATCT TGAAGAGGTC ACA-ATGGAC GTTATGTTCT TGATTTACTA 75759 ||||| |||| ||||| ||| |||||||||| | || ||| |||| |||| ||| |||| AAGGATTATT TAGGTAGTCT TGAAGAGGTC AATCATAGAC TTTATCTTCT TGACCTACTT 181 AACTAGGTAT TTTGATAGCC TTTGGAAGAA G-AATGTCAT ATCATTTATG TGTTAGTGCG 75818 || || || | |||||||||| ||| || || | || ||||| | | ||| |||| | AAGTAAGTCT TTTGATAGCC TTT-GATGAG GAAAGGTCAT AGTGTCTATA TGTTGAT... 237 TTAAGTAAGA ATGATTCTAT TCTAGGGAGT CTATAGGATC TCTTAAGTGT GTGTATAAGG 75878 .......... .......... .......... .......... .......... .......... 237 GATTGTATGC GTGGTCGCTT CACAAATCAC TTCCGTGAGA CTTAGAGTCA CCTTTGGTAG 75938 .......... .......... .......... .......... .......... .......... 237 AAAAATGTTG CCTTGATGAT TATGATACTT GGTAAGTATG TATGTGACTC ATTATAACTA 75998 ||| | | |||| | | | |||| || |||||||||| |||||| || .......... .....ATG-T T-TGATGCCT TG-AAGTGTG TATGTGACTC ATTATATGTA 279 ATAGTAAGGG TCGTTTAGGC ACATCTAGA- AGGGTTTACG GGCGGTCTCT CTTTGCGTGA 76057 || ||||| |||||| ||| |||| |||| ||||| || | | |||||||| ||||| |||| ATCCTAAGGA TCGTTTTGGC ACATTTAGAG AGGGTGTATG GACGGTCTCT CTTTGTGTGA 339 TTTAAGTGAA TCTTAGGATA GCTTTAAGTG AGAAGATTAC ATGCAAAAGG GTGTCTCGGG 76117 |||||||| ||||||||| |||||||| || | ||||| |||| | | | CGTAAGTGAA TCTTAGGATG AATTTAAGTG AGGAAATTAC ATGCTATAAG .......... 389 TGAAGAATAA GCATATTAAC TGTACAGTGA AATAAATTCA TTGTAACAGT GAATGAGTTC 76177 .......... .......... .......... .......... .......... .......... 389 ACTGTAAAGT GATCTCAAAA ATATGTTTTT GGTTTAAATG TTATATTATG TATTTCTAAA 76237 ||| ||||| | |||| ||| .......... .......... .......... .......... .TATCTTATG TGTTTCCAAA 408 TTGTTAAATG TTGTTCTTAT GATTTATAGT ATGATTT-TT AATTGAAAAT ATGCATATTT 76296 ||| | || |||| |||| || ||| | | ||| ||| || |||||| |||||||||| TTGATTTTTG ATGTTATTAT GA-TTA-AAT ATGTTTTGAA AAATGAAAAG ATGCATATTT 466 CAAATAAAAC TCTGTTTTCA TGATTTTTAT GAATAATGTC ATAATTAGTA CGTGTGGTTG 76356 | || ||| || ||||||| |||||||||| | |||||| | ||| |||||| |||||||| CCGAT-AAAG TCCGTTTTCA TGATTTTTAT GTATAATGCC ATACTTAGTA TATGTGGTTG 525 TACTAACTCC ATGTTTTTAT CTATATATAT AGTTATTCGT GGGTGAAGAG CTTCGGGAA- 76415 |||||||||| || ||||||| |||| ||||| |||| || || ||||| ||| || | ||| TACTAACTCC ATATTTTTAT CTATCTATAT AGTTCTTGGT AGGTGAGGAG TTTTGAGAAG 585 -GAAGACTTG GAC-T-GAAG ATCATTCAAG AGAAGTTGAA GTATGTCCTC ATTTGACTCA 76472 ||||||||| ||| | ||| ||| |||||| |||||||||| ||||||||| | |||||||| TGAAGACTTG GACTTAGAAT ATCGTTCAAG AGAAGTTGAA GTATGTCCTT ACTTGACTCA 645 AGGGCATATA TGTCTTTTAT GTTTTC-TTT GAAGTATTTT AATAGACTAA GTATTTTCTA 76531 |||||||||| |||||||||| |||||| || ||||||| | |||||||||| ||| |||||| AGGGCATATA TGTCTTTTAT GTTTTCATTC AAAGTATTGT AATAGACTAA GTA-TTTCTA 704 TATTCGTA-T TT--CGTATG AGCCGTGT-C CAAGTGTTCT TATGTCTTAA GATGGTGAGA 76587 |||||||| | || ||||| || |||| | ||||| |||| | |||||||| ||| ||||| TATTCGTATT TTGAAGTATG GGCTGTGTCC CAAGTATTCT TGTGTCTTAA GATTATGAGA 764 TTGAGACTTA GT 76599 |||||||||| || TTGAGACTTA GT 776 hqPGS_C10HBa0111D09.1+_SGN-E543334- (75581 75815,75954 76107,76219 76599) ******************************************************************************** EST sequence 43 -strand 762 n (File: SGN-E210664-) 1 CAGCATAGAA CTTGAACTAC TAAGTGGATC TACTAGTCTA TGCTAAAAAA GCACTTAGGA 61 ATCATCTAAA AAGTATGACC CTTCTTCCGT CTATGTTGGC CTCATGGTTT ATGGGGGATT 121 GAGTTAATAT GAACTCGCGT CCCCATATTA GTGCTTAATA CTACCCCAAA ATACTTAGCT 181 CATATGTTTT AAAAACTTGT TCTCTAGTTT GAGGTAATTT CTCAAACTTA GCTTTAAAAG 241 CTCTCTTGGA AATCATAGAT TCCTCTTTAC TAAAAACTAG CCAAAGGCTC TGTTGGAAGT 301 CTATCTTCCT TTCTTGCTCA AAATGTGAAA ACATTTGTAA CTCTTAGGGA ATACTTAGTT 361 CCCTTATGAC TTTTGAGAAA TGAACTCAGT TCTTTACTCT GTACTTAACT TGAAACTTTT 421 GATCTTAAAT CAACTCTTAG AGAATACTTA GTTCTCGTAT ATTTCTTGAA TGAATGACTT 481 CAACTTTTAC TCTTCACTTT AACTCGAAAC TTGATCCTTA AAACGAAGTT AAAATGCTTA 541 ATACGACTTT TGAAACTTAA GAACTTTGCT TTGACTTACT TCGTAACTTC TAGACTTAAC 601 TCCTAATTTC TTTAACTTTG ATCTTAACTT TCCTTGACTT GGATTATGGA TTCAAGTTTC 661 ATGATCTCAT GTTTATGGAT GATTTCATGA TATTCAACTT GGAGGTTCAT ACGAAATTAT 721 GAGCATGAAC TACTCAACTC AAGGACTGAA AGACACTACT TA Predicted gene structure (within gDNA segment 79656 to 86509): Exon 1 81184 81603 ( 420 n); cDNA 1 422 ( 422 n); score: 0.810 Intron 1 81604 82283 ( 680 n); Pd: 0.000 (s: 0.84), Pa: 0.864 (s: 0) Exon 2 82284 82307 ( 24 n); cDNA 423 445 ( 23 n); score: 0.625 Intron 2 82308 83045 ( 738 n); Pd: 0.000 (s: 0), Pa: 0.950 (s: 0) Exon 3 83046 83052 ( 7 n); cDNA 446 452 ( 7 n); score: 0.714 Intron 3 83053 84702 (1650 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 4 84703 84723 ( 21 n); cDNA 453 472 ( 20 n); score: 0.714 Intron 4 84724 84854 ( 131 n); Pd: 0.711 (s: 0), Pa: 0.000 (s: 0) Exon 5 84855 84866 ( 12 n); cDNA 473 484 ( 12 n); score: 0.667 Intron 5 84867 84948 ( 82 n); Pd: 0.955 (s: 0), Pa: 0.651 (s: 0) Exon 6 84949 84978 ( 30 n); cDNA 485 514 ( 30 n); score: 0.567 MATCH C10HBa0111D09.1+ SGN-E210664- 0.810 514 0.675 C PGS_C10HBa0111D09.1+_SGN-E210664- (81184 81603,82284 82307,83046 83052,84703 84723,84855 84866,84949 84978) Alignment (genomic DNA sequence = upper lines): CAATCTATCA GCCTGAACTA CTACGTGGAT CCACTAGGCT ATGTT-AAAA AGTACAATGG 81242 || || | | ||||||| ||| |||||| | ||||| || ||| | |||| || || || CAGCATA-GA ACTTGAACTA CTAAGTGGAT CTACTAGTCT ATGCTAAAAA AGCACTTAGG 59 AGTCATCTAA AAAGTATGAC CTTTTTTGTT TCCATGTTGG GTACATGGTT TATGGGGGAT 81302 | |||||||| |||||||||| | || || || ||||||| ||||||| |||||||||| AATCATCTAA AAAGTATGAC CCTTCTTCCG TCTATGTTGG CCTCATGGTT TATGGGGGAT 119 TGAGTTAATA TGAACTCATG TCCACATATC AGTGTTTAAT TCTACTCCCA AAAATACTTA 81362 |||||||||| ||||||| | ||| ||||| |||| ||||| |||| ||| |||||||||| TGAGTTAATA TGAACTCGCG TCCCCATATT AGTGCTTAAT ACTAC-CCC- AAAATACTTA 177 GCTTATATGT TTTTAAAATA ACTTTTTCTC TGTTTTGAGG TAATTGCTCA AACATAGATT 81422 ||| ||||| |||| ||| | |||| ||||| | ||||||| ||||| |||| ||| ||| || GCTCATATG- TTTT-AAA-A ACTTGTTCTC TAGTTTGAGG TAATTTCTCA AACTTAGCTT 234 TAAAA--TCT CATGGAAAT- -TAGTTTACT GTTTACTGAA AACTAGCTAA AGGCTCTGTT 81478 ||||| ||| | ||||||| ||| || || |||||| || ||||||| || |||||||||| TAAAAGCTCT CTTGGAAATC ATAGATTCCT CTTTACTAAA AACTAGCCAA AGGCTCTGTT 294 AGAAGTCTAG CTTCCTTTCT TGCTCAAAAT GTGAAAACAT TTGTAACTCT TAGGGAATAC 81538 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAAGTCTAT CTTCCTTTCT TGCTCAAAAT GTGAAAACAT TTGTAACTCT TAGGGAATAC 354 TTAGTT-CCT TA--AATTTT GAGAAATGAA CTCAACTCTT TACTATTTGC TTAACTTGAA 81595 |||||| ||| || | |||| |||||||||| |||| |||| |||| | | | |||||||||| TTAGTTCCCT TATGACTTTT GAGAAATGAA CTCAGTTCTT TACTCTGTAC TTAACTTGAA 414 ACTTGAGCCA TAAAACATAG TTAAAAGTTT CTTAAAGACT CTTTGAAAGT TTTAGAACTT 81655 |||| | ACTTTTGA.. .......... .......... .......... .......... .......... 422 ACTTTGACTT GCTTCTTAAC TTTTAGACTT GATTCTTAAC TTCTTTGACC TTGATCTTAA 81715 .......... .......... .......... .......... .......... .......... 422 ATTTTCTTGA ATCGGATTAT CGATTCAAGG TTCATGATCT CATGTTAATG TATTATTTCA 81775 .......... .......... .......... .......... .......... .......... 422 TGATTTTTAA ATTATCTTAG AGTGTTGGAA TCAACTAAGA AGCATGGGTA CATCACTTAG 81835 .......... .......... .......... .......... .......... .......... 422 GAACCAGTAC GAAAGAGTCG GAAATGAATG GATAGAATTG GCATCCTTCG CTCTCTTAGA 81895 .......... .......... .......... .......... .......... .......... 422 GGCGTGCGGC GCCAGTCTCC AAACTTTAAA GGCAAAGATG GGGCGCTCTA ACAAGTGTGG 81955 .......... .......... .......... .......... .......... .......... 422 CATCCCTAAA TTATAAGAAC AAAGAATGTC ATGTGGGGCA ACAGGAGGCA ATGTGTCAGG 82015 .......... .......... .......... .......... .......... .......... 422 GCCATACGGA CACACGTTTT GACTTTTCTC ACCATTTTTC ATCTCTAAAC ACTCCTAACT 82075 .......... .......... .......... .......... .......... .......... 422 TCCATGGCTA TTTCCCCAAA CACTTAGGAT CATTATTAAC CTCAATACTT AATATATTTT 82135 .......... .......... .......... .......... .......... .......... 422 ACTTGAAAAC AACCCGGTAA CACGAATCAA ATAAACACTA CGCATGCAAC AACTCAACCA 82195 .......... .......... .......... .......... .......... .......... 422 ACAAGAATTC AAAAATGTTC TTCAAGAACT TCACTTTTTT ATCATTCAAT CTACTCAAAA 82255 .......... .......... .......... .......... .......... .......... 422 TCATTGAATT TAAACAATTT GGTTTTAGGT TTAACTAAAC CAATATGAAA ATATCTCACA 82315 |||| | ||| || || | || .......... .......... ........TC TTAAATCAAC TCTTA-GAGA AT........ 445 TACCTTGATA GGGATCACCC CCGACGAATT CCACTCGCAA ATCTTGATGT TCTTGGCGAA 82375 .......... .......... .......... .......... .......... .......... 445 TCTTGACTTT TCTCCCTTTT CTTCTTCTTT TCTCTTTTCT CCAAGCCCTA AGCGTGATTT 82435 .......... .......... .......... .......... .......... .......... 445 TGATTTTCTA GTTTTATCTA AAACTTATTT TACCTCAAAT AAACTCCTAA AACAAAATTG 82495 .......... .......... .......... .......... .......... .......... 445 GAAATTGATT TGTGAAAAGA CTAGTTTGCC CTTTTCTATG TTCGGATTAG GACTTTCCTC 82555 .......... .......... .......... .......... .......... .......... 445 AAACCAACGG TCCTACTTCC ATAAAGCATA ACTCACTCAT ACGATATTGA AATCGCCCAA 82615 .......... .......... .......... .......... .......... .......... 445 ACTAACCGGA GTTGGAAAGA TATTTCCAAG GTCTTTCCAA CAATATCAAG AAATTCCACT 82675 .......... .......... .......... .......... .......... .......... 445 TATTCTAAGC TAGAAGTTAT GGCCGTTTGA AAATTATCAA AACTCACTTT CTTAACTCAG 82735 .......... .......... .......... .......... .......... .......... 445 GTAATTTTCT TGCTTTTTCC CTTTCTTTCC AAAAATGAAT AGTTTTATTT ACTTATCTTA 82795 .......... .......... .......... .......... .......... .......... 445 TTCCAAGCTA TTTCAAATTG TGGAACGTTT CATACTACCT AGAGATTTCT AAAGAAAGTG 82855 .......... .......... .......... .......... .......... .......... 445 AGGATTAATA CATGTGATGT CTTTGGTAAG ACTAAAATGG GTTTCTATCA CTGCAAGTGT 82915 .......... .......... .......... .......... .......... .......... 445 TCCACTAGTC TCGTAACTAA TGACTTCAAT TGTTAATGTT AGTTGAAAAA TTAGGATACA 82975 .......... .......... .......... .......... .......... .......... 445 ATAATGGTAA ATTATGGTCT AATTATGAAT TTACTATTGT TGTAAGGTCC TGCATATTTC 83035 .......... .......... .......... .......... .......... .......... 445 ATGTATGCAG GCTAAGTGTG GTTCCCATGT AAGTTGGGTA AATTTTGGAC TCATTACTTA 83095 || ||| .......... ACTTAGT... .......... .......... .......... .......... 452 ATGTTATCTT ATTGTGAGTC GAGCTTTAAT AAATTAAGAT ATGTAGTAAA ATATAAAGTG 83155 .......... .......... .......... .......... .......... .......... 452 TATTATATTA ATTGAATCTC ATTAAGGCTA TGCCAATTGA ATGAGTTAAG ACCTATTCTT 83215 .......... .......... .......... .......... .......... .......... 452 GTGTTTGAAC TCTAAGAAAT TGATTACACA ATTAGGTGAA TTTTTTGGTG TAGACTAGAC 83275 .......... .......... .......... .......... .......... .......... 452 ATCGAATAAT ATGAGTGTTT ATAGACTCGT TAACTTACTA ATTATTCATA TATACTTGAT 83335 .......... .......... .......... .......... .......... .......... 452 ATATTGAAAA TATTCGAAGG TATTGAGGAA AGGAATAGTA TTGCAAAATC ATCTTGCTTG 83395 .......... .......... .......... .......... .......... .......... 452 ACTACGATTC TTCGGTGGAG GTAGGTTATG GTTTATTCTA TTTTATAGTA GACTCTTAAT 83455 .......... .......... .......... .......... .......... .......... 452 AGTGATTGAT ATGAAATTGA GTGATATTAT GAATTTATCT ATGTTCTTGA TTGTGTGGTT 83515 .......... .......... .......... .......... .......... .......... 452 GTTGGCTTGA TTGTGTGGTT TGTGTTTGGT CAGAAATCAT GAGATCGTGA AATTTATAGT 83575 .......... .......... .......... .......... .......... .......... 452 CTTGAACCCT CTCTATAGAA GTGATTCTTT AAATAATGGA GGCTTAATAA AGTATCGTTA 83635 .......... .......... .......... .......... .......... .......... 452 ATGAAGTGAA AGTGGTGATA GTAAATGATA AATTAATAAT ATTATTGGAT CGGAGTTTCA 83695 .......... .......... .......... .......... .......... .......... 452 CATTCCAACA TGATATTATG GATCGGAGTG TCACGTTGTG AGATGGTATT ATTGATCGGA 83755 .......... .......... .......... .......... .......... .......... 452 GTGTCACGTT TTGATACGAT ATAATTGAAT TGGAGTGTTA TGTTTCTACA TTGTATAATT 83815 .......... .......... .......... .......... .......... .......... 452 GAATCGGAGT GTCACGTTCT GACACGGTAT TATTGGATTG AACTCACATT CTAACACGGT 83875 .......... .......... .......... .......... .......... .......... 452 ATAATTGGAT AGGAGCGTCA CGTTCTAACA CAGTAACATT AAAAGAAAGC ATATTGAATT 83935 .......... .......... .......... .......... .......... .......... 452 GATTGAAAGT ACTCAATCTC AATGAACTCA TTCCCTAAAC AAGTGTGGTG TAGAGGCCTG 83995 .......... .......... .......... .......... .......... .......... 452 AGTCCTCGTT TGTATGCTAG ATATTTTTAT TGAATACATA CTTGCTTCAG TTGTCACTTG 84055 .......... .......... .......... .......... .......... .......... 452 TTCATATTGT TTGGTGTGTG TTTATGTTAG CCTACTACTA AATTGAAAAA ACTTTAATTC 84115 .......... .......... .......... .......... .......... .......... 452 CATTATAGTA ATCATATTAA GGACATCTAA TCTCCAAATA CTAAGTCAAA GAGTATCAAA 84175 .......... .......... .......... .......... .......... .......... 452 GACATTGAAG TAAATGAAAT AAAGTAATTT ATGTCCAAAA ACTAAGGATG ACCGAGAAAA 84235 .......... .......... .......... .......... .......... .......... 452 TCCAACACAA GCTCGAATGA ATAGATCACC CTTGAACTTG ATATGCTGAC ATTGTCTAGA 84295 .......... .......... .......... .......... .......... .......... 452 GCTGAGGGCG AGTCAAAGTT GTTGTTACAC TCGCTGCACT CAATAAAAGG AAAACAAAGA 84355 .......... .......... .......... .......... .......... .......... 452 AAACACAAGT AAGGCTTAGT ATAAGGCAAT ATGTACTGAG TAGATATCAT CGGGTGACCC 84415 .......... .......... .......... .......... .......... .......... 452 AAAATAGTAA CTCATATGCG TAGAGTAATA GTATGAAATC GGATAAATGA TTACCATGTT 84475 .......... .......... .......... .......... .......... .......... 452 TTATATATAT ATATATATAT CATACAAGCC GCCACGTAGC TCAATAAATT CACCCCCAAT 84535 .......... .......... .......... .......... .......... .......... 452 TTATTCTATT AATTCTATGT CGTTTCTCTC TGTTGGATTC AAGAGAAGGG TAGGTCGGTA 84595 .......... .......... .......... .......... .......... .......... 452 ATTTCCCCTT CTCCCGTTCT TCGTTCTTTT TCTCTGGGAT CTTATATCTT CCTCTTCGTT 84655 .......... .......... .......... .......... .......... .......... 452 ATTCTGAAGA GCTCTTATCA CTTCCCTTTA TGTTCCATGT ATAAAAGTCA CGTTTGTTAT 84715 || ||| | || | .......... .......... .......... .......... .......TCT CGTATATT-T 464 CCTGAAAGGT TTGTTTCCTC TATGTTACAT GGAAAACAAC AGATTCATTT TTTGCCATAA 84775 | |||| | CTTGAATG.. .......... .......... .......... .......... .......... 472 TGCGAACACG AACGTTTCAT TCCAATTCCC TATAGATTTG CTCCTCCAAA CAAGAAGGTA 84835 .......... .......... .......... .......... .......... .......... 472 AAAACCTTCA CTTATTTAGA ATGACAATAA GGTACACCTT CTCTGTATGC CTACTAATTT 84895 | ||||| || .......... .........A ATGACTTCAA C......... .......... .......... 484 GGGTTGTTGC TTGTTTCCCA TTTGTTCATT CTCTGGGTTT TCATTATTTG AAGTTTTTCC 84955 |||| | .......... .......... .......... .......... .......... ...TTTTACT 491 TCTCGGATCT ACCAAAAACT GGA 84978 || | || ||||| || CTTCACTTTA ACTCGAAACT TGA 514 hqPGS_C10HBa0111D09.1+_SGN-E210664- (81184 81603,82284 82307,83046 83052,84703 84723) ******************************************************************************** EST sequence 101 -strand 808 n (File: SGN-E257221-) 1 TTAAAGAAAA TGCAATACCA AACTCACTNN TACTTATATA ATAAATAATA TAGTTCTAAA 61 GGAGATCTCT AACCGACAAC AATTACGATG AGCCTACGTG ATGGTACAAG GTCATACCTC 121 ACGTTGCAAG AGGACCATCT TATACCTTGC CGTCAGCATA GAACTTGAAC TACTAAGTGG 181 ATCTACTAGT CTATGCTAAA AAAGCACTTA GGAATCATCT AAAAAGTATG ACCCTTCTTC 241 CGTCTATGTT GGCCTCATGG TTTATGGGGG ATTGAGTTAA TATGAACTCG CGTCCCCATA 301 TTAGTGCTTA ATACTACCCC AAAATACTTA GCTCATATGT TTTAAAAACT TGTTCTCTAG 361 TTTGAGGTAA TTTCTCAAAC TTAGCTTTAA AAGCTCTCTT GGAAATCATA GATTCCTCTT 421 TACTAAAAAC TAGCCAAAGG CTCTGTTGGA AGTCTATCTT CCTTTCTTGC TCAAAATGTG 481 AAAACATTTG TAACTCTTAG GGAATACTTA GTTCCCTTAT GACTTTTGAG AAATGAACTC 541 AGTTCTTTAC TCTGTACTTA ACTTGAAACT TTTGATCTTA AATCAACTCT TAGAGAATAC 601 TTAGTTCTCG TATATTTCTT GAATGAATGA CTTCAACTTT TACTCTTCAC TTTAACTCGA 661 AACTTGATCC TTAAAACGAA GTTAAAATGC TTAATACGAC TTTTGAAACT TAAGAACTTT 721 GCTTTGACTT ACTTCGTAAC TTCTAGACTT AACTCCTAAT TTCTTTAACT TTGATCTTAA 781 CTTTCCTTGA CTTGGATTAT GGATTCAA Predicted gene structure (within gDNA segment 78126 to 86039): Exon 1 78790 78824 ( 35 n); cDNA 130 163 ( 34 n); score: 0.629 Intron 1 78825 81194 (2370 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.77) Exon 2 81195 81603 ( 409 n); cDNA 164 575 ( 412 n); score: 0.819 Intron 2 81604 82283 ( 680 n); Pd: 0.000 (s: 0.84), Pa: 0.864 (s: 0) Exon 3 82284 82307 ( 24 n); cDNA 576 598 ( 23 n); score: 0.625 Intron 3 82308 83045 ( 738 n); Pd: 0.000 (s: 0), Pa: 0.950 (s: 0) Exon 4 83046 83052 ( 7 n); cDNA 599 605 ( 7 n); score: 0.714 Intron 4 83053 84702 (1650 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 5 84703 84723 ( 21 n); cDNA 606 625 ( 20 n); score: 0.714 Intron 5 84724 84854 ( 131 n); Pd: 0.711 (s: 0), Pa: 0.000 (s: 0) Exon 6 84855 84866 ( 12 n); cDNA 626 637 ( 12 n); score: 0.667 Intron 6 84867 84948 ( 82 n); Pd: 0.955 (s: 0), Pa: 0.651 (s: 0) Exon 7 84949 84978 ( 30 n); cDNA 638 667 ( 30 n); score: 0.567 MATCH C10HBa0111D09.1+ SGN-E257221- 0.819 538 0.666 C PGS_C10HBa0111D09.1+_SGN-E257221- (78790 78824,81195 81603,82284 82307,83046 83052,84703 84723,84855 84866,84949 84978) Alignment (genomic DNA sequence = upper lines): GATAATCACG ATAGACTCTT TCCGCTAGAA TAGACTCCCC AACAAGTGTA GAAACACATG 78849 || | || || || ||| ||| || | |||| GAGGACCATC TTATAC-CTT GCCGTCAGCA TAGAA..... .......... .......... 163 AGAGTTCATA AAGTTTCTCA AGAAGAATTT CGAACTTAAT TGCAACATAA GAAGTTACAA 78909 .......... .......... .......... .......... .......... .......... 163 AAGACAAACT TGCTCTTCGG TCTTGAAAAT CATAAACATC AAAACTAAAC ACTTTGATCA 78969 .......... .......... .......... .......... .......... .......... 163 TACCAGTGAA AACATCTAGA CAGTTCTCTT GCTCTTGGCG GCTAATTATT TCATAGAGGT 79029 .......... .......... .......... .......... .......... .......... 163 AATTTGCTCC TCTGTCAATG CCGGAAGTAG TTCCTATAGG TACATCCCTT TCTGGTGGAG 79089 .......... .......... .......... .......... .......... .......... 163 CAGCCGATGA ATATTGGGGT ACATTACCCA AATTTCCACC ACCCTGCTTA TTCTTAGGAC 79149 .......... .......... .......... .......... .......... .......... 163 ACTCTTTCAT GAAGTGACCC TCATGACTGC ACTTAAAGCA ACCTTACTAG CCATCATGAC 79209 .......... .......... .......... .......... .......... .......... 163 ACTAAACTGT GTGGTTTTCT ACCATACCTA CCATATGCAG GAGCCCAACT ACCTCCTTGT 79269 .......... .......... .......... .......... .......... .......... 163 TCCATATTAC CTTAGGACTG TGTTTGTCTA GCCTTAAGTT TTGCGAATTT TGGTCATTAT 79329 .......... .......... .......... .......... .......... .......... 163 ACTCACCTCT GTTTCTGGGT GGAGATTCAC TAGCAGATAA TTGTGCATGA CCCTTTTGTT 79389 .......... .......... .......... .......... .......... .......... 163 TCTGAAAAAA TGGACGGTTC ATACTACCTT TCTGTTGTCC AGACTCAATT CCAGACTTAG 79449 .......... .......... .......... .......... .......... .......... 163 CTTTCTTGTT TTTATACTCT TCTCTGTGCC TCAACTTGTC CTCTTCAACC TGTTGCACAT 79509 .......... .......... .......... .......... .......... .......... 163 AGACCATCAA CCTCGATATG TCCATTTTAC CTGTCGGCAT GGTAGCCCTG CGTGTTTTAC 79569 .......... .......... .......... .......... .......... .......... 163 TTGATGAACG ACCCAAGCCA GCGACAAACA AGCTCATTCT GCTCCTCATG TCCTTAACAA 79629 .......... .......... .......... .......... .......... .......... 163 TTTCAGGAGC ATAGCAGGTC AAATGGGTGA ACTTCAACCC ATACTCGTGC ACACTTTAAG 79689 .......... .......... .......... .......... .......... .......... 163 AGTCTTGTTT CAGTGTAAGA AACTCTAGTA CCTTAGCCTC TTTCAATTCT CGGGTAAATA 79749 .......... .......... .......... .......... .......... .......... 163 AATGCCCCAA GAAAGCTTCT TCAAAGACGT CTCAATTGAG ATATGGTTTA TCCTCATCTC 79809 .......... .......... .......... .......... .......... .......... 163 TACCCTCCTT CCGGTGCTCG AACCAAGTTC TAGCCACATT TTTCAGTTTA TATGCAGCTA 79869 .......... .......... .......... .......... .......... .......... 163 GTTCAACTCT ACCAGCATCC ACAACATGCA TGACATCAAA CACCTTCTTG AGTTCCTCAA 79929 .......... .......... .......... .......... .......... .......... 163 TGAAATTCAT GGGATCCTCA GTAGTGCTTC AACTGGTGAA ACATGGAGGG TTCATCATCA 79989 .......... .......... .......... .......... .......... .......... 163 AGAACTCGTA AATCCTTGAA GTGTCAGCCT CTTCTTGCTG ATCTCATCAT TTTTTCCAAC 80049 .......... .......... .......... .......... .......... .......... 163 CTTGGTTAGT CACACCTTGG CTTAACATTC GGATTGACTC ACAGATTTCA GCATTGGTGA 80109 .......... .......... .......... .......... .......... .......... 163 CTTCTCCTTG AGGTTGTAAT TCTGGTGCAT TAGGTACCCT TTGCTCTTAT ATATCAATGT 80169 .......... .......... .......... .......... .......... .......... 163 TTCTCCTAAC GATACGACCT CGTGCTTCTC TCCGTGATGG AATGGTTATT AGAAACACGC 80229 .......... .......... .......... .......... .......... .......... 163 ACAAGCACGA ATTAGAGAGA AACTTTTACA GATAAACTCT AATGCACGAA AAGAGTATGA 80289 .......... .......... .......... .......... .......... .......... 163 AAGAAATGAG AAGTTCCTTG ATGTTGCATC CTCCTAATTA TATATGTTGT GTGTTTCACA 80349 .......... .......... .......... .......... .......... .......... 163 CTAATAACTA GGACTCTACA GACACGACTT CATAGACTCC CTAGGACTCT TGAACTCTCT 80409 .......... .......... .......... .......... .......... .......... 163 ACTCTGATAC CACATTTGTC CCGCCTGAGC CTACACCTTG GACATGGCTA GTACTCGAAA 80469 .......... .......... .......... .......... .......... .......... 163 ATCGTTATTG GCCTCAAGCG GGCCCTTGGC CTGGCATCTT TTACTCAGCA AAAGACTTAG 80529 .......... .......... .......... .......... .......... .......... 163 CTTAATAAAA TTAGTCTCAT GATATAAAGT AAAGAAATAA TACGTTTGCC AAAATGGTAC 80589 .......... .......... .......... .......... .......... .......... 163 TTAAGTCTCA TAAAAAAGTA TCTGAAATAC AAAAATAAGA GACTCAAAAC TGACTAAGTG 80649 .......... .......... .......... .......... .......... .......... 163 ATTGTCTATG AAGCCTTTAT AATACTAAGA GGGATGTTGG GACAAACCCC ACTACATCCT 80709 .......... .......... .......... .......... .......... .......... 163 TTAAAAGGAA ATACTAAAAA GCAAAAAATG TGTCCTCCAG AATTCAAAGA GGCTCACCAA 80769 .......... .......... .......... .......... .......... .......... 163 TGACTTTGAA TGCTCAACTG GCTCAACGAG GCACTGACTG ATGCTAATCC TGGTTACTTG 80829 .......... .......... .......... .......... .......... .......... 163 CATCTGCATC ATGATACGAT GCAGGCCAAT TGACATTTGT ACATTAAATG TACGAGTACG 80889 .......... .......... .......... .......... .......... .......... 163 CGAGTTGGAA TGCTAACAAC AACTTAAGCT TGAAAAAGAG AAAGAAGGAA CACTTACCTT 80949 .......... .......... .......... .......... .......... .......... 163 GGCTTTGCTA ACTCAAGAAT AACATTAATC AATATTAATG AATAAGACAT ATGAAATATA 81009 .......... .......... .......... .......... .......... .......... 163 TAAAAGCTTG TAAAATAATG AAAATACTTA GTTTGTTAAG GAAAATGCAA TAACAAACTC 81069 .......... .......... .......... .......... .......... .......... 163 AACTTTACTT ATATATGAAG TAATATAGTT TCTATGGAAG ATTTTCTAAT AGAAAACCAT 81129 .......... .......... .......... .......... .......... .......... 163 TATGAGCCTT AGCGATGGTC AAATGTTCTT ACCTCACGTT GAAAGAGGAC CATCCAATCT 81189 .......... .......... .......... .......... .......... .......... 163 ATCAGCCTGA ACTACTACGT GGATCCACTA GGCTATG-TT AAAAAGTACA ATGGAGTCAT 81248 | ||| ||||||| || ||||| |||| | ||||| | |||||| || ||| |||| .....CTTGA ACTACTAAGT GGATCTACTA GTCTATGCTA AAAAAGCACT TAGGAATCAT 218 CTAAAAAGTA TGACCTTTTT TGTTTCCATG TTGGGTACAT GGTTTATGGG GGATTGAGTT 81308 |||||||||| ||||| || | | || ||| |||| ||| |||||||||| |||||||||| CTAAAAAGTA TGACCCTTCT TCCGTCTATG TTGGCCTCAT GGTTTATGGG GGATTGAGTT 278 AATATGAACT CATGTCCACA TATCAGTGTT TAATTCTACT CCCAAAAATA CTTAGCTTAT 81368 |||||||||| | |||| || ||| |||| | |||| |||| ||| |||||| ||||||| || AATATGAACT CGCGTCCCCA TATTAGTGCT TAATACTAC- CCC-AAAATA CTTAGCTCAT 336 ATGTTTTTAA AATAACTTTT TCTCTGTTTT GAGGTAATTG CTCAAACATA GATTTAAAA- 81427 ||| |||| | || ||||| | ||||| ||| ||||||||| ||||||| || | ||||||| ATG-TTTT-A AA-AACTTGT TCTCTAGTTT GAGGTAATTT CTCAAACTTA GCTTTAAAAG 393 -TCTCATGGA AAT--TAGTT TACTGTTTAC TGAAAACTAG CTAAAGGCTC TGTTAGAAGT 81484 |||| |||| ||| ||| | | || ||||| | |||||||| | |||||||| |||| ||||| CTCTCTTGGA AATCATAGAT TCCTCTTTAC TAAAAACTAG CCAAAGGCTC TGTTGGAAGT 453 CTAGCTTCCT TTCTTGCTCA AAATGTGAAA ACATTTGTAA CTCTTAGGGA ATACTTAGTT 81544 ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTATCTTCCT TTCTTGCTCA AAATGTGAAA ACATTTGTAA CTCTTAGGGA ATACTTAGTT 513 -CCTTA--AA TTTTGAGAAA TGAACTCAAC TCTTTACTAT TTGCTTAACT TGAAACTTGA 81601 ||||| | |||||||||| |||||||| |||||||| | | ||||||| |||||||| CCCTTATGAC TTTTGAGAAA TGAACTCAGT TCTTTACTCT GTACTTAACT TGAAACTTTT 573 GCCATAAAAC ATAGTTAAAA GTTTCTTAAA GACTCTTTGA AAGTTTTAGA ACTTACTTTG 81661 | GA........ .......... .......... .......... .......... .......... 575 ACTTGCTTCT TAACTTTTAG ACTTGATTCT TAACTTCTTT GACCTTGATC TTAAATTTTC 81721 .......... .......... .......... .......... .......... .......... 575 TTGAATCGGA TTATCGATTC AAGGTTCATG ATCTCATGTT AATGTATTAT TTCATGATTT 81781 .......... .......... .......... .......... .......... .......... 575 TTAAATTATC TTAGAGTGTT GGAATCAACT AAGAAGCATG GGTACATCAC TTAGGAACCA 81841 .......... .......... .......... .......... .......... .......... 575 GTACGAAAGA GTCGGAAATG AATGGATAGA ATTGGCATCC TTCGCTCTCT TAGAGGCGTG 81901 .......... .......... .......... .......... .......... .......... 575 CGGCGCCAGT CTCCAAACTT TAAAGGCAAA GATGGGGCGC TCTAACAAGT GTGGCATCCC 81961 .......... .......... .......... .......... .......... .......... 575 TAAATTATAA GAACAAAGAA TGTCATGTGG GGCAACAGGA GGCAATGTGT CAGGGCCATA 82021 .......... .......... .......... .......... .......... .......... 575 CGGACACACG TTTTGACTTT TCTCACCATT TTTCATCTCT AAACACTCCT AACTTCCATG 82081 .......... .......... .......... .......... .......... .......... 575 GCTATTTCCC CAAACACTTA GGATCATTAT TAACCTCAAT ACTTAATATA TTTTACTTGA 82141 .......... .......... .......... .......... .......... .......... 575 AAACAACCCG GTAACACGAA TCAAATAAAC ACTACGCATG CAACAACTCA ACCAACAAGA 82201 .......... .......... .......... .......... .......... .......... 575 ATTCAAAAAT GTTCTTCAAG AACTTCACTT TTTTATCATT CAATCTACTC AAAATCATTG 82261 .......... .......... .......... .......... .......... .......... 575 AATTTAAACA ATTTGGTTTT AGGTTTAACT AAACCAATAT GAAAATATCT CACATACCTT 82321 |||| | ||| || || ||| .......... .......... ..TCTTAAAT CAACTCTTA- GAGAAT.... .......... 598 GATAGGGATC ACCCCCGACG AATTCCACTC GCAAATCTTG ATGTTCTTGG CGAATCTTGA 82381 .......... .......... .......... .......... .......... .......... 598 CTTTTCTCCC TTTTCTTCTT CTTTTCTCTT TTCTCCAAGC CCTAAGCGTG ATTTTGATTT 82441 .......... .......... .......... .......... .......... .......... 598 TCTAGTTTTA TCTAAAACTT ATTTTACCTC AAATAAACTC CTAAAACAAA ATTGGAAATT 82501 .......... .......... .......... .......... .......... .......... 598 GATTTGTGAA AAGACTAGTT TGCCCTTTTC TATGTTCGGA TTAGGACTTT CCTCAAACCA 82561 .......... .......... .......... .......... .......... .......... 598 ACGGTCCTAC TTCCATAAAG CATAACTCAC TCATACGATA TTGAAATCGC CCAAACTAAC 82621 .......... .......... .......... .......... .......... .......... 598 CGGAGTTGGA AAGATATTTC CAAGGTCTTT CCAACAATAT CAAGAAATTC CACTTATTCT 82681 .......... .......... .......... .......... .......... .......... 598 AAGCTAGAAG TTATGGCCGT TTGAAAATTA TCAAAACTCA CTTTCTTAAC TCAGGTAATT 82741 .......... .......... .......... .......... .......... .......... 598 TTCTTGCTTT TTCCCTTTCT TTCCAAAAAT GAATAGTTTT ATTTACTTAT CTTATTCCAA 82801 .......... .......... .......... .......... .......... .......... 598 GCTATTTCAA ATTGTGGAAC GTTTCATACT ACCTAGAGAT TTCTAAAGAA AGTGAGGATT 82861 .......... .......... .......... .......... .......... .......... 598 AATACATGTG ATGTCTTTGG TAAGACTAAA ATGGGTTTCT ATCACTGCAA GTGTTCCACT 82921 .......... .......... .......... .......... .......... .......... 598 AGTCTCGTAA CTAATGACTT CAATTGTTAA TGTTAGTTGA AAAATTAGGA TACAATAATG 82981 .......... .......... .......... .......... .......... .......... 598 GTAAATTATG GTCTAATTAT GAATTTACTA TTGTTGTAAG GTCCTGCATA TTTCATGTAT 83041 .......... .......... .......... .......... .......... .......... 598 GCAGGCTAAG TGTGGTTCCC ATGTAAGTTG GGTAAATTTT GGACTCATTA CTTAATGTTA 83101 || || | ....ACTTAG T......... .......... .......... .......... .......... 605 TCTTATTGTG AGTCGAGCTT TAATAAATTA AGATATGTAG TAAAATATAA AGTGTATTAT 83161 .......... .......... .......... .......... .......... .......... 605 ATTAATTGAA TCTCATTAAG GCTATGCCAA TTGAATGAGT TAAGACCTAT TCTTGTGTTT 83221 .......... .......... .......... .......... .......... .......... 605 GAACTCTAAG AAATTGATTA CACAATTAGG TGAATTTTTT GGTGTAGACT AGACATCGAA 83281 .......... .......... .......... .......... .......... .......... 605 TAATATGAGT GTTTATAGAC TCGTTAACTT ACTAATTATT CATATATACT TGATATATTG 83341 .......... .......... .......... .......... .......... .......... 605 AAAATATTCG AAGGTATTGA GGAAAGGAAT AGTATTGCAA AATCATCTTG CTTGACTACG 83401 .......... .......... .......... .......... .......... .......... 605 ATTCTTCGGT GGAGGTAGGT TATGGTTTAT TCTATTTTAT AGTAGACTCT TAATAGTGAT 83461 .......... .......... .......... .......... .......... .......... 605 TGATATGAAA TTGAGTGATA TTATGAATTT ATCTATGTTC TTGATTGTGT GGTTGTTGGC 83521 .......... .......... .......... .......... .......... .......... 605 TTGATTGTGT GGTTTGTGTT TGGTCAGAAA TCATGAGATC GTGAAATTTA TAGTCTTGAA 83581 .......... .......... .......... .......... .......... .......... 605 CCCTCTCTAT AGAAGTGATT CTTTAAATAA TGGAGGCTTA ATAAAGTATC GTTAATGAAG 83641 .......... .......... .......... .......... .......... .......... 605 TGAAAGTGGT GATAGTAAAT GATAAATTAA TAATATTATT GGATCGGAGT TTCACATTCC 83701 .......... .......... .......... .......... .......... .......... 605 AACATGATAT TATGGATCGG AGTGTCACGT TGTGAGATGG TATTATTGAT CGGAGTGTCA 83761 .......... .......... .......... .......... .......... .......... 605 CGTTTTGATA CGATATAATT GAATTGGAGT GTTATGTTTC TACATTGTAT AATTGAATCG 83821 .......... .......... .......... .......... .......... .......... 605 GAGTGTCACG TTCTGACACG GTATTATTGG ATTGAACTCA CATTCTAACA CGGTATAATT 83881 .......... .......... .......... .......... .......... .......... 605 GGATAGGAGC GTCACGTTCT AACACAGTAA CATTAAAAGA AAGCATATTG AATTGATTGA 83941 .......... .......... .......... .......... .......... .......... 605 AAGTACTCAA TCTCAATGAA CTCATTCCCT AAACAAGTGT GGTGTAGAGG CCTGAGTCCT 84001 .......... .......... .......... .......... .......... .......... 605 CGTTTGTATG CTAGATATTT TTATTGAATA CATACTTGCT TCAGTTGTCA CTTGTTCATA 84061 .......... .......... .......... .......... .......... .......... 605 TTGTTTGGTG TGTGTTTATG TTAGCCTACT ACTAAATTGA AAAAACTTTA ATTCCATTAT 84121 .......... .......... .......... .......... .......... .......... 605 AGTAATCATA TTAAGGACAT CTAATCTCCA AATACTAAGT CAAAGAGTAT CAAAGACATT 84181 .......... .......... .......... .......... .......... .......... 605 GAAGTAAATG AAATAAAGTA ATTTATGTCC AAAAACTAAG GATGACCGAG AAAATCCAAC 84241 .......... .......... .......... .......... .......... .......... 605 ACAAGCTCGA ATGAATAGAT CACCCTTGAA CTTGATATGC TGACATTGTC TAGAGCTGAG 84301 .......... .......... .......... .......... .......... .......... 605 GGCGAGTCAA AGTTGTTGTT ACACTCGCTG CACTCAATAA AAGGAAAACA AAGAAAACAC 84361 .......... .......... .......... .......... .......... .......... 605 AAGTAAGGCT TAGTATAAGG CAATATGTAC TGAGTAGATA TCATCGGGTG ACCCAAAATA 84421 .......... .......... .......... .......... .......... .......... 605 GTAACTCATA TGCGTAGAGT AATAGTATGA AATCGGATAA ATGATTACCA TGTTTTATAT 84481 .......... .......... .......... .......... .......... .......... 605 ATATATATAT ATATCATACA AGCCGCCACG TAGCTCAATA AATTCACCCC CAATTTATTC 84541 .......... .......... .......... .......... .......... .......... 605 TATTAATTCT ATGTCGTTTC TCTCTGTTGG ATTCAAGAGA AGGGTAGGTC GGTAATTTCC 84601 .......... .......... .......... .......... .......... .......... 605 CCTTCTCCCG TTCTTCGTTC TTTTTCTCTG GGATCTTATA TCTTCCTCTT CGTTATTCTG 84661 .......... .......... .......... .......... .......... .......... 605 AAGAGCTCTT ATCACTTCCC TTTATGTTCC ATGTATAAAA GTCACGTTTG TTATCCTGAA 84721 || ||| | || || |||| .......... .......... .......... .......... .TCTCGTATA TT-TCTTGAA 623 AGGTTTGTTT CCTCTATGTT ACATGGAAAA CAACAGATTC ATTTTTTGCC ATAATGCGAA 84781 | TG........ .......... .......... .......... .......... .......... 625 CACGAACGTT TCATTCCAAT TCCCTATAGA TTTGCTCCTC CAAACAAGAA GGTAAAAACC 84841 .......... .......... .......... .......... .......... .......... 625 TTCACTTATT TAGAATGACA ATAAGGTACA CCTTCTCTGT ATGCCTACTA ATTTGGGTTG 84901 |||||| || .......... ...AATGACT TCAAC..... .......... .......... .......... 637 TTGCTTGTTT CCCATTTGTT CATTCTCTGG GTTTTCATTA TTTGAAGTTT TTCCTCTCGG 84961 ||| | | || .......... .......... .......... .......... .......TTT TACTCTTCAC 650 ATCTACCAAA AACTGGA 84978 | || | |||| || TTTAACTCGA AACTTGA 667 hqPGS_C10HBa0111D09.1+_SGN-E257221- (81195 81603,82284 82307,83046 83052,84703 84723) ******************************************************************************** EST sequence 75 -strand 510 n (File: SGN-E271481-) 1 GTAAGGGTAA TTTTAAAGCA TAAAATAAGC TTGATACTTG ATAGAAAAAT GGATACATAC 61 TTACCTCTTC TCAAACTTGA AACTCAAGGA ATGCTCAAGA ATACTCAACT TACTCAACTC 121 AGCATACTCA AGAATGAGAT ACTCATTTAG AGATTAAATA CTAAGCTCAA AGATATGATA 181 CTCGACTATG GATATTCAAC TCAATATAAA GCAACGGTAC ACATGCTATG TATAAAAAGC 241 TTTATAAAAT AGTAAAAACA ACTTAGTTCG TTAAAGAAAA TGCAATAACA AACTCAACTT 301 TACTTATATA ATAAAGTAAT ATAGTTTCTA AAGGAGATTC TCTAACCGAC AACAATTACG 361 ATGAGCCTAC GTGATGGTAC AAGGTCATAC CTCACGTTGC AAGAGGACCA TCTTATACCT 421 TGCCGTCAGC ATAGAACTTG AACTACTAAG TGGATCTACT AGTCTATGCT AAAAAAGCAC 481 TTAGGAATCA TCTAAAAAGT ATGACCCTTC Predicted gene structure (within gDNA segment 77690 to 83503): Exon 1 78790 78797 ( 8 n); cDNA 191 198 ( 8 n); score: 0.875 Intron 1 78798 80975 (2178 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.62) Exon 2 80976 81183 ( 208 n); cDNA 199 412 ( 214 n); score: 0.743 MATCH C10HBa0111D09.1+ SGN-E271481- 0.743 216 0.424 C PGS_C10HBa0111D09.1+_SGN-E271481- (78790 78797,80976 81183) Alignment (genomic DNA sequence = upper lines): GATAATCACG ATAGACTCTT TCCGCTAGAA TAGACTCCCC AACAAGTGTA GAAACACATG 78849 |||| ||| GATATTCA.. .......... .......... .......... .......... .......... 198 AGAGTTCATA AAGTTTCTCA AGAAGAATTT CGAACTTAAT TGCAACATAA GAAGTTACAA 78909 .......... .......... .......... .......... .......... .......... 198 AAGACAAACT TGCTCTTCGG TCTTGAAAAT CATAAACATC AAAACTAAAC ACTTTGATCA 78969 .......... .......... .......... .......... .......... .......... 198 TACCAGTGAA AACATCTAGA CAGTTCTCTT GCTCTTGGCG GCTAATTATT TCATAGAGGT 79029 .......... .......... .......... .......... .......... .......... 198 AATTTGCTCC TCTGTCAATG CCGGAAGTAG TTCCTATAGG TACATCCCTT TCTGGTGGAG 79089 .......... .......... .......... .......... .......... .......... 198 CAGCCGATGA ATATTGGGGT ACATTACCCA AATTTCCACC ACCCTGCTTA TTCTTAGGAC 79149 .......... .......... .......... .......... .......... .......... 198 ACTCTTTCAT GAAGTGACCC TCATGACTGC ACTTAAAGCA ACCTTACTAG CCATCATGAC 79209 .......... .......... .......... .......... .......... .......... 198 ACTAAACTGT GTGGTTTTCT ACCATACCTA CCATATGCAG GAGCCCAACT ACCTCCTTGT 79269 .......... .......... .......... .......... .......... .......... 198 TCCATATTAC CTTAGGACTG TGTTTGTCTA GCCTTAAGTT TTGCGAATTT TGGTCATTAT 79329 .......... .......... .......... .......... .......... .......... 198 ACTCACCTCT GTTTCTGGGT GGAGATTCAC TAGCAGATAA TTGTGCATGA CCCTTTTGTT 79389 .......... .......... .......... .......... .......... .......... 198 TCTGAAAAAA TGGACGGTTC ATACTACCTT TCTGTTGTCC AGACTCAATT CCAGACTTAG 79449 .......... .......... .......... .......... .......... .......... 198 CTTTCTTGTT TTTATACTCT TCTCTGTGCC TCAACTTGTC CTCTTCAACC TGTTGCACAT 79509 .......... .......... .......... .......... .......... .......... 198 AGACCATCAA CCTCGATATG TCCATTTTAC CTGTCGGCAT GGTAGCCCTG CGTGTTTTAC 79569 .......... .......... .......... .......... .......... .......... 198 TTGATGAACG ACCCAAGCCA GCGACAAACA AGCTCATTCT GCTCCTCATG TCCTTAACAA 79629 .......... .......... .......... .......... .......... .......... 198 TTTCAGGAGC ATAGCAGGTC AAATGGGTGA ACTTCAACCC ATACTCGTGC ACACTTTAAG 79689 .......... .......... .......... .......... .......... .......... 198 AGTCTTGTTT CAGTGTAAGA AACTCTAGTA CCTTAGCCTC TTTCAATTCT CGGGTAAATA 79749 .......... .......... .......... .......... .......... .......... 198 AATGCCCCAA GAAAGCTTCT TCAAAGACGT CTCAATTGAG ATATGGTTTA TCCTCATCTC 79809 .......... .......... .......... .......... .......... .......... 198 TACCCTCCTT CCGGTGCTCG AACCAAGTTC TAGCCACATT TTTCAGTTTA TATGCAGCTA 79869 .......... .......... .......... .......... .......... .......... 198 GTTCAACTCT ACCAGCATCC ACAACATGCA TGACATCAAA CACCTTCTTG AGTTCCTCAA 79929 .......... .......... .......... .......... .......... .......... 198 TGAAATTCAT GGGATCCTCA GTAGTGCTTC AACTGGTGAA ACATGGAGGG TTCATCATCA 79989 .......... .......... .......... .......... .......... .......... 198 AGAACTCGTA AATCCTTGAA GTGTCAGCCT CTTCTTGCTG ATCTCATCAT TTTTTCCAAC 80049 .......... .......... .......... .......... .......... .......... 198 CTTGGTTAGT CACACCTTGG CTTAACATTC GGATTGACTC ACAGATTTCA GCATTGGTGA 80109 .......... .......... .......... .......... .......... .......... 198 CTTCTCCTTG AGGTTGTAAT TCTGGTGCAT TAGGTACCCT TTGCTCTTAT ATATCAATGT 80169 .......... .......... .......... .......... .......... .......... 198 TTCTCCTAAC GATACGACCT CGTGCTTCTC TCCGTGATGG AATGGTTATT AGAAACACGC 80229 .......... .......... .......... .......... .......... .......... 198 ACAAGCACGA ATTAGAGAGA AACTTTTACA GATAAACTCT AATGCACGAA AAGAGTATGA 80289 .......... .......... .......... .......... .......... .......... 198 AAGAAATGAG AAGTTCCTTG ATGTTGCATC CTCCTAATTA TATATGTTGT GTGTTTCACA 80349 .......... .......... .......... .......... .......... .......... 198 CTAATAACTA GGACTCTACA GACACGACTT CATAGACTCC CTAGGACTCT TGAACTCTCT 80409 .......... .......... .......... .......... .......... .......... 198 ACTCTGATAC CACATTTGTC CCGCCTGAGC CTACACCTTG GACATGGCTA GTACTCGAAA 80469 .......... .......... .......... .......... .......... .......... 198 ATCGTTATTG GCCTCAAGCG GGCCCTTGGC CTGGCATCTT TTACTCAGCA AAAGACTTAG 80529 .......... .......... .......... .......... .......... .......... 198 CTTAATAAAA TTAGTCTCAT GATATAAAGT AAAGAAATAA TACGTTTGCC AAAATGGTAC 80589 .......... .......... .......... .......... .......... .......... 198 TTAAGTCTCA TAAAAAAGTA TCTGAAATAC AAAAATAAGA GACTCAAAAC TGACTAAGTG 80649 .......... .......... .......... .......... .......... .......... 198 ATTGTCTATG AAGCCTTTAT AATACTAAGA GGGATGTTGG GACAAACCCC ACTACATCCT 80709 .......... .......... .......... .......... .......... .......... 198 TTAAAAGGAA ATACTAAAAA GCAAAAAATG TGTCCTCCAG AATTCAAAGA GGCTCACCAA 80769 .......... .......... .......... .......... .......... .......... 198 TGACTTTGAA TGCTCAACTG GCTCAACGAG GCACTGACTG ATGCTAATCC TGGTTACTTG 80829 .......... .......... .......... .......... .......... .......... 198 CATCTGCATC ATGATACGAT GCAGGCCAAT TGACATTTGT ACATTAAATG TACGAGTACG 80889 .......... .......... .......... .......... .......... .......... 198 CGAGTTGGAA TGCTAACAAC AACTTAAGCT TGAAAAAGAG AAAGAAGGAA CACTTACCTT 80949 .......... .......... .......... .......... .......... .......... 198 GGCTTTGCTA ACTCAAGAAT AACATTAATC AATATTAATG AATAAGACAT ATGAAATATA 81009 | || ||||| || || ||| ||| || || .......... .......... ......ACTC AATATAAAGC AACGGTACAC ATGCTATGTA 232 T-AAAAGC-T TGTAAAATAA TGAAAAT-AC TTAGTTTGTT AAGGAAAATG CAATAACAAA 81066 | |||||| | | ||||||| | |||| || |||||| ||| || ||||||| |||||||||| TAAAAAGCTT TATAAAATAG TAAAAACAAC TTAGTTCGTT AAAGAAAATG CAATAACAAA 292 CTCAACTTTA CTTATAT-AT GAAGTAATAT AGTTTCTATG GAAGATTTTC TAATAGAAAA 81125 |||||||||| ||||||| || ||||||||| |||||||| | ||||| || ||| || || CTCAACTTTA CTTATATAAT AAAGTAATAT AGTTTCTAAA GGAGATTCTC TAACCGACAA 352 CCATTA---T GAGCCTTAGC GATGGTCAAA TGTTCTTACC TCACGTTGAA AGAGGACCAT 81182 | |||| | |||||| | |||||| | | | || |||| |||||||| | |||||||||| CAATTACGAT GAGCCTACGT GATGGT-ACA AGGTCATACC TCACGTTGCA AGAGGACCAT 411 C 81183 | C 412 hqPGS_C10HBa0111D09.1+_SGN-E271481- (80976 81183) ******************************************************************************** EST sequence 73 +strand 637 n (File: SGN-E232987+) 1 CTTATTCATT TTTGCTAAAA GTTTTATTCC TTCCAAGCTC TTAATGGATT ATACTTATTT 61 ATTATGAAAT AATAATGATT TAATAATCAT CTCGTCTAGT CACCACTACA GCTTTCTTCT 121 TTTATTAGTT ACCCTAACAG CGCCTCAACT TTGTTTACTC CCCTAAACGG CCCTCTTGCC 181 TACCGGTTTC AACCTTAGGA TGACATAGTC TGGGCATACT CATTCAGAGA ATATTTCTGT 241 AGTAAACCTT CTAAAGATGC TTATTAAAGT ATTATTAAGT CATGATAAAC AATTATAATC 301 AACAAGAGAT TTTCAGGAAT AAATAAAATT TAGCTACTCA TAAATTTAAT AGTATATACC 361 TGATTTTGTA GATTTGTAGC TTCGGATTTC TCCATAGTTA TTAGCTTATT TTGTTAACTA 421 TCTAGCTCTG ATACCAATTT TGGGGTGCAA GCGTAAAGAG AGAGTATTCA GAAAGATGAG 481 AGATGTAAGG ATGAAGGTGT GTTTTATTTA TGAGGAAAGC TCCTCTATTT ATACACATAA 541 ATTACACCGT CATACTATTT ACTTTACATA ATTGGCCGAC AAACTTTTTA CATGATTGGC 601 CGACAAACTA TTTACTTTAC GACTTTTGTA CATTTGA Predicted gene structure (within gDNA segment 88266 to 84420): Exon 1 86555 86021 ( 535 n); cDNA 5 546 ( 542 n); score: 0.818 MATCH C10HBa0111D09.1- SGN-E232987+ 0.818 535 0.840 C PGS_C10HBa0111D09.1-_SGN-E232987+ (86555 86021) Alignment (genomic DNA sequence = upper lines): TTTATTTTTC ACTAAAATTT TATTCCTTTC AACCTCTTAA AAAATTATAC TTGCTTATTA 86496 || |||||| ||| ||| |||||||| | || ||||||| ||||||| || |||||| TTCATTTTTG CTAAAAGTTT TATTCCTTCC AAGCTCTTAA TGGATTATAC TTATTTATTA 64 TGCAAAAATA ATGATTTAAT AATCATCTAG TCTGGTCACT ACTACAGTTT TCTTCTTTGA 86436 || || |||| |||||||||| |||||||| | ||| ||||| ||||||| || |||||||| | TGAAATAATA ATGATTTAAT AATCATCTCG TCTAGTCACC ACTACAGCTT TCTTCTTTTA 124 TTAGTTACCC TAACAGCGCC TCAACTTTGT TTACTCCCCT AAACGGCCTT CTCTGCCTAC 86376 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | || ||||||| TTAGTTACCC TAACAGCGCC TCAACTTTGT TTACTCCCCT AAACGGCCCT CT-TGCCTAC 183 CGGTTTCAAC CTTAGGATGG CATAGTCTGG CAATACTTGT TTGAAGAATA TTTCTGTAGC 86316 |||||||||| ||||||||| |||||||||| ||||| | | |||||| ||||||||| CGGTTTCAAC CTTAGGATGA CATAGTCTGG GCATACTCAT TCAGAGAATA TTTCTGTAGT 243 AAACTTTCTA AAGATGGTTA TTATAACATT ATTCAAACAT TATAAACAAT TATAATTAAC 86256 |||| ||||| |||||| ||| ||| | ||| ||| | ||| ||||||||| |||||| ||| AAACCTTCTA AAGATGCTTA TTAAAGTATT ATTAAGTCAT GATAAACAAT TATAATCAAC 303 AAGAGATTTT CAGGAATAAA T-TAATTTAG CTACTCATAA ATATAAAATG GTATACCTGT 86197 |||||||||| |||||||||| | ||||||| |||||||||| || ||| | |||||||| AAGAGATTTT CAGGAATAAA TAAAATTTAG CTACTCATAA ATTTAATAGT ATATACCTGA 363 TCTTGTAGA- -T-CATC-TG TCATAGTTGA TTTGTT-TT- CCATAGTTAT TTAATTAACT 86143 | ||||||| | | | | || | | ||| || | || || |||| || || TTTTGTAGAT TTGTAGCTTC GGATTTCTCC ATAGTTATTA GCTTATTTTG TTAACTATCT 423 AGCTCTGATA CCAATGGAGG GGATGGAAGC GTAAAGAGA- A-TATTCAGA AAGATGAGAG 86085 |||||||||| ||||| || || || |||| ||||||||| | |||||||| |||||||||| AGCTCTGATA CCAATTTTGG GG-TGCAAGC GTAAAGAGAG AGTATTCAGA AAGATGAGAG 482 ATGTAAGGAT GAAGGTGTGT TTTATTTATG AGGAAAGCTC CTCTATTTAT ACACAAAATT 86025 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| || | ATGTAAGGAT GAAGGTGTGT TTTATTTATG AGGAAAGCTC CTCTATTTAT ACACATAAAT 542 TACA 86021 |||| TACA 546 hqPGS_C10HBa0111D09.1-_SGN-E232987+ (86555 86021) ******************************************************************************** EST sequence 93 +strand 644 n (File: SGN-E376857+) 1 CTTATTCATT TTTGCTAAAA GTTTTATTCC TTCCAAGCTC TTAATGGATT ATACTTATTT 61 ATTATGAAAT AATAATGATT TAATAATCAT CTCGTCTAGT CACCACTACA GCTTTCTTCT 121 TTTATTAGTT ACCCTAACAG CGCCTCAACT TTGTTTACTC CCCTAAACGG CCCTCTTGCC 181 TACCGGTTTC AACCTTAGGA TGACATAGTC TGGGCATACT CATTCAGAGA ATATTTCTGT 241 AGTAAACCTT CTAAAGATGC TTATTAAAGT ATTATTAAGT CATGATAAAC AATTATAATC 301 AACAAGAGAT TTTCAGGAAT AAATAAAATT TAGCTACTCA TAAATTTAAT AGTATATACC 361 TGATTTTGTA GATTTGTAGC TTCGGATTTC TCCATAGTTA TTAGCTTATT TTGTTAACTA 421 TCTAGCTCTG ATACCAATTT TGGGGTGCAA GCGTAAAGAG AGAGTATTCA GAAAGATGAG 481 AGATGTAAGG ATGAAGGTGT GTTTTATTTA TGAGGAAAGC TCCTCTATTT ATACACATAA 541 ATTACACCGT CATACTATTT ACTTTACATA ATTGGCCGAC AAACTTTTTT ACATGATTGG 601 CCGACAAACT ATTTACTTTA CGACTTTTGT ACATTTGACT TTTT Predicted gene structure (within gDNA segment 88266 to 84350): Exon 1 86555 86021 ( 535 n); cDNA 5 546 ( 542 n); score: 0.818 MATCH C10HBa0111D09.1- SGN-E376857+ 0.818 535 0.831 C PGS_C10HBa0111D09.1-_SGN-E376857+ (86555 86021) Alignment (genomic DNA sequence = upper lines): TTTATTTTTC ACTAAAATTT TATTCCTTTC AACCTCTTAA AAAATTATAC TTGCTTATTA 86496 || |||||| ||| ||| |||||||| | || ||||||| ||||||| || |||||| TTCATTTTTG CTAAAAGTTT TATTCCTTCC AAGCTCTTAA TGGATTATAC TTATTTATTA 64 TGCAAAAATA ATGATTTAAT AATCATCTAG TCTGGTCACT ACTACAGTTT TCTTCTTTGA 86436 || || |||| |||||||||| |||||||| | ||| ||||| ||||||| || |||||||| | TGAAATAATA ATGATTTAAT AATCATCTCG TCTAGTCACC ACTACAGCTT TCTTCTTTTA 124 TTAGTTACCC TAACAGCGCC TCAACTTTGT TTACTCCCCT AAACGGCCTT CTCTGCCTAC 86376 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | || ||||||| TTAGTTACCC TAACAGCGCC TCAACTTTGT TTACTCCCCT AAACGGCCCT CT-TGCCTAC 183 CGGTTTCAAC CTTAGGATGG CATAGTCTGG CAATACTTGT TTGAAGAATA TTTCTGTAGC 86316 |||||||||| ||||||||| |||||||||| ||||| | | |||||| ||||||||| CGGTTTCAAC CTTAGGATGA CATAGTCTGG GCATACTCAT TCAGAGAATA TTTCTGTAGT 243 AAACTTTCTA AAGATGGTTA TTATAACATT ATTCAAACAT TATAAACAAT TATAATTAAC 86256 |||| ||||| |||||| ||| ||| | ||| ||| | ||| ||||||||| |||||| ||| AAACCTTCTA AAGATGCTTA TTAAAGTATT ATTAAGTCAT GATAAACAAT TATAATCAAC 303 AAGAGATTTT CAGGAATAAA T-TAATTTAG CTACTCATAA ATATAAAATG GTATACCTGT 86197 |||||||||| |||||||||| | ||||||| |||||||||| || ||| | |||||||| AAGAGATTTT CAGGAATAAA TAAAATTTAG CTACTCATAA ATTTAATAGT ATATACCTGA 363 TCTTGTAGA- -T-CATC-TG TCATAGTTGA TTTGTT-TT- CCATAGTTAT TTAATTAACT 86143 | ||||||| | | | | || | | ||| || | || || |||| || || TTTTGTAGAT TTGTAGCTTC GGATTTCTCC ATAGTTATTA GCTTATTTTG TTAACTATCT 423 AGCTCTGATA CCAATGGAGG GGATGGAAGC GTAAAGAGA- A-TATTCAGA AAGATGAGAG 86085 |||||||||| ||||| || || || |||| ||||||||| | |||||||| |||||||||| AGCTCTGATA CCAATTTTGG GG-TGCAAGC GTAAAGAGAG AGTATTCAGA AAGATGAGAG 482 ATGTAAGGAT GAAGGTGTGT TTTATTTATG AGGAAAGCTC CTCTATTTAT ACACAAAATT 86025 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| || | ATGTAAGGAT GAAGGTGTGT TTTATTTATG AGGAAAGCTC CTCTATTTAT ACACATAAAT 542 TACA 86021 |||| TACA 546 hqPGS_C10HBa0111D09.1-_SGN-E376857+ (86555 86021) ******************************************************************************** EST sequence 62 +strand 731 n (File: SGN-E550037+) 1 TCTTCCTCAT TTTTGCTAAA AGTTTTATTC CTTCCAAGCT CTTAATGGAT TATACTTATT 61 TATTACGAAA TAATAATGAT TTAATAATCA TCTCGTCTAG TCACCACTAC AGCTTTCTTC 121 TTTTATTAGT TACCCTAACA GCGCCTCAAC TTTGTTTACT CCCCTAAACG GCCCTCTTGC 181 CTACCGGTTT CAACCTTAGG ATGACATAGT CTGGGCATAC TCATTCAGAG AATATTTCTG 241 TAGTAAACCT TCTAAAGATG CTTATTAAAG TATTATTAAG TCATGATAAA CAATTATAAT 301 CAACAAGAGA TTTTCAGGAA TAAATAAAAT TTAGCTACTC ATAAATTTAA TAGTATATAC 361 CTGATTTTGT AGATTTGTAG CTTCGGATTT CTCCATAGTT ATTAGCTTAT TTTGTTAACT 421 ATCTAGCTCT GATACCAATT TTGGGGTGCA AGCGTAAAGA GAGAGTATTC AGAAAGATGA 481 GAGATGTAAG GATGAAGGTG TGTTTTATTT ATGAGGAAAG CTCCTCTATT TATACACATA 541 AATTACACCG TCATACTATT TACTTTACAT AATTGGCCGA CAAACTTTTT ACATGATTGG 601 CCCGACAACT ATTTACTTTA CGACTTTTGT ACATTTGACT TTTTCAGCCG ACGCAAGACG 661 ACAAAAATAA GAAGACTCTT ACTTTATACA TATGCCTGAT ATTCAACCGA ACAACAATAC 721 TTATATACTT T Predicted gene structure (within gDNA segment 88276 to 82290): Exon 1 86552 86022 ( 531 n); cDNA 9 546 ( 538 n); score: 0.816 Intron 1 86021 83834 (2188 n); Pd: 0.000 (s: 0.96), Pa: 0.389 (s: 0) Exon 2 83833 83805 ( 29 n); cDNA 547 570 ( 24 n); score: 0.655 Intron 2 83804 83053 ( 752 n); Pd: 0.720 (s: 0), Pa: 0.000 (s: 0.60) Exon 3 83052 83011 ( 42 n); cDNA 571 612 ( 42 n); score: 0.595 MATCH C10HBa0111D09.1- SGN-E550037+ 0.816 602 0.824 C PGS_C10HBa0111D09.1-_SGN-E550037+ (86552 86022,83833 83805,83052 83011) Alignment (genomic DNA sequence = upper lines): ATTTTTCACT AAAATTTTAT TCCTTTCAAC CTCTTAAAAA ATTATACTTG CTTATTATGC 86493 |||||| ||| |||||| ||||| ||| ||||||| ||||||||| |||||| | ATTTTTGCTA AAAGTTTTAT TCCTTCCAAG CTCTTAATGG ATTATACTTA TTTATTACGA 68 AAAAATAATG ATTTAATAAT CATCTAGTCT GGTCACTACT ACAGTTTTCT TCTTTGATTA 86433 || ||||||| |||||||||| ||||| |||| ||||| ||| |||| ||||| ||||| |||| AATAATAATG ATTTAATAAT CATCTCGTCT AGTCACCACT ACAGCTTTCT TCTTTTATTA 128 GTTACCCTAA CAGCGCCTCA ACTTTGTTTA CTCCCCTAAA CGGCCTTCTC TGCCTACCGG 86373 |||||||||| |||||||||| |||||||||| |||||||||| ||||| ||| |||||||||| GTTACCCTAA CAGCGCCTCA ACTTTGTTTA CTCCCCTAAA CGGCCCTCT- TGCCTACCGG 187 TTTCAACCTT AGGATGGCAT AGTCTGGCAA TACTTGTTTG AAGAATATTT CTGTAGCAAA 86313 |||||||||| |||||| ||| ||||||| | |||| || ||||||||| |||||| ||| TTTCAACCTT AGGATGACAT AGTCTGGGCA TACTCATTCA GAGAATATTT CTGTAGTAAA 247 CTTTCTAAAG ATGGTTATTA TAACATTATT CAAACATTAT AAACAATTAT AATTAACAAG 86253 | |||||||| ||| |||||| | |||||| | ||| || |||||||||| ||| |||||| CCTTCTAAAG ATGCTTATTA AAGTATTATT AAGTCATGAT AAACAATTAT AATCAACAAG 307 AGATTTTCAG GAATAAAT-T AATTTAGCTA CTCATAAATA TAAAATGGTA TACCTGTTCT 86194 |||||||||| |||||||| |||||||||| ||||||||| ||| | || |||||| | | AGATTTTCAG GAATAAATAA AATTTAGCTA CTCATAAATT TAATAGTATA TACCTGATTT 367 TGTAGA--T- CATC-TGTCA TAGTTGATTT GTT-TT-CCA TAGTTATTTA ATTAACTAGC 86140 |||||| | | | | | | | | ||| || | || || ||| | || ||||| TGTAGATTTG TAGCTTCGGA TTTCTCCATA GTTATTAGCT TATTTTGTTA ACTATCTAGC 427 TCTGATACCA ATGGAGGGGA TGGAAGCGTA AAGAGA-A-T ATTCAGAAAG ATGAGAGATG 86082 |||||||||| || |||| || ||||||| |||||| | | |||||||||| |||||||||| TCTGATACCA ATTTTGGGG- TGCAAGCGTA AAGAGAGAGT ATTCAGAAAG ATGAGAGATG 486 TAAGGATGAA GGTGTGTTTT ATTTATGAGG AAAGCTCCTC TATTTATACA CAAAATTTAC 86022 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || || |||| TAAGGATGAA GGTGTGTTTT ATTTATGAGG AAAGCTCCTC TATTTATACA CATAAATTAC 546 AAACTTTTGG CTAAAAGTGG CCGACACATA CTTTACACAT GGCCTCTCTT TATTCGGCCG 85962 .......... .......... .......... .......... .......... .......... 546 ACACAAGAAA ACAAAGCAGT TAAACGTACT CTGTGTATTT CTGGTTCAGT ATGGATCAAA 85902 .......... .......... .......... .......... .......... .......... 546 TATTTGAGAG ACTTAAGTAT TTCTTGTAGT AATTTTTCTC GCCATGCTGA GCACAAGTTA 85842 .......... .......... .......... .......... .......... .......... 546 CTTAAAAAAT GGCAATGGAA ACACGAACTT GTCTAGTTCA TTAATGATAT CACAAAGTGG 85782 .......... .......... .......... .......... .......... .......... 546 TTATCTCAGT CTTTGTAGAG TGGAAGTTAA TATGACAGTG AACTTACATG TAGCAGCGAA 85722 .......... .......... .......... .......... .......... .......... 546 TTATTGATAG GCAACAAGCT ACCCCAACCA GAACGGCTTT GGCCATAGTG AACTTGCGAT 85662 .......... .......... .......... .......... .......... .......... 546 GATTAATTCA AAAATTAGGA CCTTTCTTAG CTCGAATACA CATCATACAC TACGTACACT 85602 .......... .......... .......... .......... .......... .......... 546 AGTCTTGATA TTATACTGTA AAGGGGAATA CACTATTCAG GGCAGAAACA TAAATTAAGG 85542 .......... .......... .......... .......... .......... .......... 546 AGTTGAGTCT GCAGGGGAAA AACAATTATC ATTGATTCAT TTCCTCAAGT CTGAACGGTT 85482 .......... .......... .......... .......... .......... .......... 546 GTTGTAGTAT AAATTGATAT CACACCCATT ATTTCAATGT TCATTAGCCT AAAGATATTA 85422 .......... .......... .......... .......... .......... .......... 546 CATTATTGTA TCCACATGAG AAACATTGTT CAAACTATCA AAGATGTAAT CGCCAAAATT 85362 .......... .......... .......... .......... .......... .......... 546 ACAGTCATGC AGAAATTGCT AGGCTTAATT CATCAGAAAT CAACCTTATA GAGCAGATGT 85302 .......... .......... .......... .......... .......... .......... 546 ATACATAAGT TCTCCATTGT ATATAAATTT CTAGCATAGT CTATTTCATT GAAGAAATTT 85242 .......... .......... .......... .......... .......... .......... 546 TATGAACATA AAGAGAGAAC AAGCTCTTAA ATTATGTGTG TCAAATCACA TAGCAAAACA 85182 .......... .......... .......... .......... .......... .......... 546 ACTAATTCGA GCATGCTATA AGGAATACCA AAACGAAGAA GCAAATCCAG TAAACCAAAG 85122 .......... .......... .......... .......... .......... .......... 546 TAAAATCAAA GTGCAAGAGA TATTTCCGGA TTCATCGAAA CAACCAAATT AACATCAGGT 85062 .......... .......... .......... .......... .......... .......... 546 TTAAACAAAA GGTATCAATA AAATTAGTAA ATAGAACATT AAACAATACA TAGACCAAGC 85002 .......... .......... .......... .......... .......... .......... 546 ATATGGTGGC GAAAAGATAC ACCTCCAGTT TTTGGTAGAT CCGAGAGGAA AAACTTCAAA 84942 .......... .......... .......... .......... .......... .......... 546 TAATGAAAAC CCAGAGAATG AACAAATGGG AAACAAGCAA CAACCCAAAT TAGTAGGCAT 84882 .......... .......... .......... .......... .......... .......... 546 ACAGAGAAGG TGTACCTTAT TGTCATTCTA AATAAGTGAA GGTTTTTACC TTCTTGTTTG 84822 .......... .......... .......... .......... .......... .......... 546 GAGGAGCAAA TCTATAGGGA ATTGGAATGA AACGTTCGTG TTCGCATTAT GGCAAAAAAT 84762 .......... .......... .......... .......... .......... .......... 546 GAATCTGTTG TTTTCCATGT AACATAGAGG AAACAAACCT TTCAGGATAA CAAACGTGAC 84702 .......... .......... .......... .......... .......... .......... 546 TTTTATACAT GGAACATAAA GGGAAGTGAT AAGAGCTCTT CAGAATAACG AAGAGGAAGA 84642 .......... .......... .......... .......... .......... .......... 546 TATAAGATCC CAGAGAAAAA GAACGAAGAA CGGGAGAAGG GGAAATTACC GACCTACCCT 84582 .......... .......... .......... .......... .......... .......... 546 TCTCTTGAAT CCAACAGAGA GAAACGACAT AGAATTAATA GAATAAATTG GGGGTGAATT 84522 .......... .......... .......... .......... .......... .......... 546 TATTGAGCTA CGTGGCGGCT TGTATGATAT ATATATATAT ATATAAAACA TGGTAATCAT 84462 .......... .......... .......... .......... .......... .......... 546 TTATCCGATT TCATACTATT ACTCTACGCA TATGAGTTAC TATTTTGGGT CACCCGATGA 84402 .......... .......... .......... .......... .......... .......... 546 TATCTACTCA GTACATATTG CCTTATACTA AGCCTTACTT GTGTTTTCTT TGTTTTCCTT 84342 .......... .......... .......... .......... .......... .......... 546 TTATTGAGTG CAGCGAGTGT AACAACAACT TTGACTCGCC CTCAGCTCTA GACAATGTCA 84282 .......... .......... .......... .......... .......... .......... 546 GCATATCAAG TTCAAGGGTG ATCTATTCAT TCGAGCTTGT GTTGGATTTT CTCGGTCATC 84222 .......... .......... .......... .......... .......... .......... 546 CTTAGTTTTT GGACATAAAT TACTTTATTT CATTTACTTC AATGTCTTTG ATACTCTTTG 84162 .......... .......... .......... .......... .......... .......... 546 ACTTAGTATT TGGAGATTAG ATGTCCTTAA TATGATTACT ATAATGGAAT TAAAGTTTTT 84102 .......... .......... .......... .......... .......... .......... 546 TCAATTTAGT AGTAGGCTAA CATAAACACA CACCAAACAA TATGAACAAG TGACAACTGA 84042 .......... .......... .......... .......... .......... .......... 546 AGCAAGTATG TATTCAATAA AAATATCTAG CATACAAACG AGGACTCAGG CCTCTACACC 83982 .......... .......... .......... .......... .......... .......... 546 ACACTTGTTT AGGGAATGAG TTCATTGAGA TTGAGTACTT TCAATCAATT CAATATGCTT 83922 .......... .......... .......... .......... .......... .......... 546 TCTTTTAATG TTACTGTGTT AGAACGTGAC GCTCCTATCC AATTATACCG TGTTAGAATG 83862 .......... .......... .......... .......... .......... .......... 546 TGAGTTCAAT CCAATAATAC CGTGTCAGAA CGTGACACTC CGATTCAATT ATACAATGTA 83802 | ||| || | | ||| | || ||| || .......... .......... ........AC CGT--CA-TA CTATTTACTT -TAC-AT... 570 GAAACATAAC ACTCCAATTC AATTATATCG TATCAAAACG TGACACTCCG ATCAATAATA 83742 .......... .......... .......... .......... .......... .......... 570 CCATCTCACA ACGTGACACT CCGATCCATA ATATCATGTT GGAATGTGAA ACTCCGATCC 83682 .......... .......... .......... .......... .......... .......... 570 AATAATATTA TTAATTTATC ATTTACTATC ACCACTTTCA CTTCATTAAC GATACTTTAT 83622 .......... .......... .......... .......... .......... .......... 570 TAAGCCTCCA TTATTTAAAG AATCACTTCT ATAGAGAGGG TTCAAGACTA TAAATTTCAC 83562 .......... .......... .......... .......... .......... .......... 570 GATCTCATGA TTTCTGACCA AACACAAACC ACACAATCAA GCCAACAACC ACACAATCAA 83502 .......... .......... .......... .......... .......... .......... 570 GAACATAGAT AAATTCATAA TATCACTCAA TTTCATATCA ATCACTATTA AGAGTCTACT 83442 .......... .......... .......... .......... .......... .......... 570 ATAAAATAGA ATAAACCATA ACCTACCTCC ACCGAAGAAT CGTAGTCAAG CAAGATGATT 83382 .......... .......... .......... .......... .......... .......... 570 TTGCAATACT ATTCCTTTCC TCAATACCTT CGAATATTTT CAATATATCA AGTATATATG 83322 .......... .......... .......... .......... .......... .......... 570 AATAATTAGT AAGTTAACGA GTCTATAAAC ACTCATATTA TTCGATGTCT AGTCTACACC 83262 .......... .......... .......... .......... .......... .......... 570 AAAAAATTCA CCTAATTGTG TAATCAATTT CTTAGAGTTC AAACACAAGA ATAGGTCTTA 83202 .......... .......... .......... .......... .......... .......... 570 ACTCATTCAA TTGGCATAGC CTTAATGAGA TTCAATTAAT ATAATACACT TTATATTTTA 83142 .......... .......... .......... .......... .......... .......... 570 CTACATATCT TAATTTATTA AAGCTCGACT CACAATAAGA TAACATTAAG TAATGAGTCC 83082 .......... .......... .......... .......... .......... .......... 570 AAAATTTACC CAACTTACAT GGGAACCACA CTTAGCCTGC ATACATGAAA TATGCAGGAC 83022 | || ||| | | || | | ||| | | .......... .......... .........A ATTGGCCGAC AAACTTTTTA CATGATTGGC 601 CTTACAACAA T 83011 | ||||| | | CCGACAACTA T 612 hqPGS_C10HBa0111D09.1-_SGN-E550037+ (86552 86022) ******************************************************************************** EST sequence 4 +strand 764 n (File: SGN-E578125+) 1 AAAATTAGAA ATAAACACAG GAGATATGAA TAGACCCAGT ACGTCAAGAG TTAAAACCCC 61 AGATAATAGT CCCAGAAATA GTCCTAGAGC TAGTCCTAGA TGGACACCAC CTACTTATTA 121 TACAGAAAGT TATCAACAAT CAGATAGAAA TAATGCAATA TGGAACAGTA AATTAAATAA 181 AAATTGGATA CCAAAACCAA TAAGTAAACA ATATAATTTC TTAGATCTAG ATTGTGTCAC 241 AGACATAAAT AAAGCAATAT TACTATGGTC AGGAAATATA TCTAAACAGT TAATAGATAA 301 CAAAATAGAA ACAACAAAAA CACCGAGATG CATAGAAAGA ACATTCGTAG GAACAACAAA 361 ATTATGGATA GAAAATCTAC CCCAGAAAGC TTAGAAGTAC TTAGAAGTGA TAAGAAAATG 421 GATGGATCCC CATCAGCAAC AAATATAGAA ATATTAGATA AATACGAATC AGCAATAAGA 481 AATGAATTTG GAGGTATGAC CACAGATATA AAAGAACAAA ACAGAGAAAA AATAATAAAC 541 AGACAACTTA TGACAAAATT ATCTATATGT AAAATGTGTT ACATTGAACA ATATACTTGT 601 GCATTTAAAG AATAGTACTA CAAATCAAAA TATAATTTAG ATGAAGCAAG AGAGATAAGA 661 CAACAATATT TTACAAAATT ACCAGAACCA TTTAGCACAA AATAATTAAA GATTGGGATA 721 ACGAAGGGAT AGTAGATACT TTAGGAGCTA GAATAAATTC CTAT Predicted gene structure (within gDNA segment 87160 to 90850): Exon 1 87907 88603 ( 697 n); cDNA 71 763 ( 693 n); score: 0.892 MATCH C10HBa0111D09.1+ SGN-E578125+ 0.892 697 0.912 C PGS_C10HBa0111D09.1+_SGN-E578125+ (87907 88603) Alignment (genomic DNA sequence = upper lines): CCCAGATAAT AGTCCCAGAA ATAGTCCTAG GAGAACACCA CCAACTTATT ATACAGAGAG 87966 |||||| ||| ||||| ||| ||||||||| | |||||| || ||||||| ||||||| || CCCAGA-AAT AGTCCTAGAG CTAGTCCTAG ATGGACACCA CCTACTTATT ATACAGAAAG 129 CTATCAACAA TCAGATAGAA ATAATGCAAT ATGGAACAGT AGATTAAATA AAAATTGGAC 88026 ||||||||| |||||||||| |||||||||| |||||||||| | |||||||| ||||||||| TTATCAACAA TCAGATAGAA ATAATGCAAT ATGGAACAGT AAATTAAATA AAAATTGGAT 189 ACCTAAACCA GCAAATGAAC AATACAATTT TTTAGATTTA GATTGTGTCG CAGATATAAA 88086 ||| |||||| || | ||| |||| ||||| |||||| || ||||||||| |||| ||||| ACCAAAACCA ATAAGTAAAC AATATAATTT CTTAGATCTA GATTGTGTCA CAGACATAAA 249 TAAAGCAATA TTAATATGGA TAGGAAATAT GTCTAAACAG TTAATAGACA ATAAAATAGA 88146 |||||||||| ||| ||||| ||||||||| ||||||||| |||||||| | | |||||||| TAAAGCAATA TTACTATGGT CAGGAAATAT ATCTAAACAG TTAATAGATA ACAAAATAGA 309 AACAGCAAAA ACACCAAGAT ACATAGAAAG AACATTTGTA GGAACAACAA AATTATGGAT 88206 |||| ||||| ||||| |||| ||||||||| |||||| ||| |||||||||| |||||||||| AACAACAAAA ACACCGAGAT GCATAGAAAG AACATTCGTA GGAACAACAA AATTATGGAT 369 AGAAAATCTA CCCTCGGAAA GTTTAGAAGT ACTTAGGAAT GATAAGAAAA TGGATGGATC 88266 |||||||||| ||| | |||| | |||||||| |||||| | | |||||||||| |||||||||| AGAAAATCTA CCC-CAGAAA GCTTAGAAGT ACTTAGAAGT GATAAGAAAA TGGATGGATC 428 TGCATCAGCA ACAAATATAG ATATACTAGA TAAATATGAA TCAGCAATAA GAAATGAATT 88326 |||||||| |||||||||| | ||| |||| |||||| ||| |||||||||| |||||||||| CCCATCAGCA ACAAATATAG AAATATTAGA TAAATACGAA TCAGCAATAA GAAATGAATT 488 TGGAGGCATG ACTACAGATA TAAGAGAACA AAATAGAGAA AAAATAATAA ATAGACAACT 88386 |||||| ||| || ||||||| ||| |||||| ||| |||||| |||||||||| | |||||||| TGGAGGTATG ACCACAGATA TAAAAGAACA AAACAGAGAA AAAATAATAA ACAGACAACT 548 TATGACAAAA TTAGCTATAT GTAAAATGTG TTACTTAGAA GAATATACTT GCGCATTTAA 88446 |||||||||| ||| |||||| |||||||||| |||| | ||| ||||||||| | |||||||| TATGACAAAA TTATCTATAT GTAAAATGTG TTACATTGAA CAATATACTT GTGCATTTAA 608 AGAATATTAT TACAAAGCTA AATACAATTT AGACGAAGCA AAAGAAATAA GAAAACAATA 88506 |||||| || |||||| | | |||| ||||| ||| |||||| | ||| |||| || ||||||| AGAATAGTAC TACAAATCAA AATATAATTT AGATGAAGCA AGAGAGATAA GACAACAATA 668 TTATACAAAA TTACCAGAAC CATTTAGTAC AAACGTAATA AAGGATTGGA ATAATGAAGG 88566 || ||||||| |||||||||| ||||||| || ||| |||| || |||||| |||| ||||| TTTTACAAAA TTACCAGAAC CATTTAGCAC AAA-ATAATT AAAGATTGGG ATAACGAAGG 727 AATAATAGAT ACTTTAGGAT CTAGAATAAA ATTTTTA 88603 ||| ||||| ||||||||| ||||||| || ||| || GATAGTAGAT ACTTTAGGAG CTAGAAT-AA ATTCCTA 763 hqPGS_C10HBa0111D09.1+_SGN-E578125+ (87907 88603) ******************************************************************************** EST sequence 28 +strand 763 n (File: SGN-E343544+) 1 ATATTATATA AAAAAATAAT AAAATAAAAA GACCATATAG ACCAAAAAGA AAAATATTCC 61 AATGTACTTG TTATAATTGC GGAAAGATAG GACATTTAGC TAGAGATTGT AAACTACCCA 121 AAGATCCGAA AATGAAGCAA ATTGCAGAAG TAATTATAGA TAATCATAAA TATATGCAAA 181 TAGAATACAT AGACTATGAA TTAAGTGAAG ACGATAGTAT ATATGAAGTA TCAGATATAG 241 AAACTGAAAA TGAAGAAGAA AATATTAATC TAGATAATAA TGAAACAGAT GAAGAAATAT 301 AATGTCTGAA GATGAGATAA AAATAATATC TAAAGAAGAT TATCAAAATG AAGAATTATC 361 AGACTAAAAA ATTATATTTG ATAATACAAT TTTTGAACAA ATAAAAGGAA AAGAATTAGA 421 CTTAAGTGTT GAAAAAGTAC TTGAAATACC TACTCTATGA AATTGGTTTA AAAGACAAAA 481 AGAAGAATAT TATGTAGTTA GTCAAAAAGA ACATATTATA GATTGTAAAT ATGCAAGAGG 541 AAAAACATAT ATACCTATAC TAAGTAAACG AATAATAAAT AAAGAAATAC AAGATATAAA 601 AGCTAAAACA CCAATAAAAT ATGTACATTT AGGAGGAACA GAAATATTAA TAAAAGCTTG 661 TTTTAGAGAA GGAATAGATA CACCTATTGA AATATACTTA GCAGATGATA GAATTATACA 721 CCCTATAGAA AAAAGTGTAA TTAGTGCAGT AAAAGGAAAC TTA Predicted gene structure (within gDNA segment 86292 to 90181): Exon 1 88802 89561 ( 760 n); cDNA 2 762 ( 761 n); score: 0.914 MATCH C10HBa0111D09.1+ SGN-E343544+ 0.914 760 0.996 C PGS_C10HBa0111D09.1+_SGN-E343544+ (88802 89561) Alignment (genomic DNA sequence = upper lines): TATTATGTAA AAAACT-ATA AAATAAAAAG ACCATACAGA CCGAAAAGAA AGATATCCCA 88860 |||||| ||| |||| | ||| |||||||||| |||||| ||| || ||||||| | |||| ||| TATTATATAA AAAAATAATA AAATAAAAAG ACCATATAGA CCAAAAAGAA AAATATTCCA 61 ATGTACTTGT TATAATTGTG GAAAGATAGG ACACATAGCT AAAGATTGTA AATTACCCAA 88920 |||||||||| |||||||| | |||||||||| ||| ||||| | |||||||| || ||||||| ATGTACTTGT TATAATTGCG GAAAGATAGG ACATTTAGCT AGAGATTGTA AACTACCCAA 121 AAATCCAAAA AGAAAACAGA TAGCAGAATT AATTATAGAT AATGAAAAAT ATATGCAAAT 88980 | |||| ||| | || || | | |||||| | |||||||||| ||| | |||| |||||||||| AGATCCGAAA ATGAAGCAAA TTGCAGAAGT AATTATAGAT AATCATAAAT ATATGCAAAT 181 AGAGTACATA GATTATGAAT TAAGTGAAAA TGATAGTATA TATGAAGTAT CAGATATAGA 89040 ||| |||||| || ||||||| |||||||| | ||||||||| |||||||||| |||||||||| AGAATACATA GACTATGAAT TAAGTGAAGA CGATAGTATA TATGAAGTAT CAGATATAGA 241 AACTGAGAAT GAAGAAGAAA ATATTAACAT AGATAATAAT GAAACAGATG AAGAAATATA 89100 |||||| ||| |||||||||| ||||||| | |||||||||| |||||||||| |||||||||| AACTGAAAAT GAAGAAGAAA ATATTAATCT AGATAATAAT GAAACAGATG AAGAAATATA 301 ATGTCTGAAA ATGAAATAAA AATAATATCT AAGGAAGAAT ATCAAAATGA AGAATCATCA 89160 ||||||||| |||| ||||| |||||||||| || ||||| | |||||||||| ||||| |||| ATGTCTGAAG ATGAGATAAA AATAATATCT AAAGAAGATT ATCAAAATGA AGAATTATCA 361 GAACAGAAAA TTATATTTGA TAATACGATA TTTGAACAAA TAAAAGGAAA AGAATTAGAT 89220 || | |||| |||||||||| |||||| || |||||||||| |||||||||| ||||||||| GACTAAAAAA TTATATTTGA TAATACAATT TTTGAACAAA TAAAAGGAAA AGAATTAGAC 421 TTAAGTGTTG AAAAAGTATT AGAAATACCT ATTTTAAGAA ATTTGTTTAA AAGACAAAAA 89280 |||||||||| |||||||| | ||||||||| | | || ||| ||| |||||| |||||||||| TTAAGTGTTG AAAAAGTACT TGAAATACCT ACTCTATGAA ATTGGTTTAA AAGACAAAAA 481 GAAGAATACT ATGTAGTTAG CCAAAAAGAA CATATCATAG ATTGCAAATA CACAAGAGGA 89340 |||||||| | |||||||||| ||||||||| ||||| |||| |||| ||||| |||||||| GAAGAATATT ATGTAGTTAG TCAAAAAGAA CATATTATAG ATTGTAAATA TGCAAGAGGA 541 AAAACATATA TACCTATAAT AAATAAAAGA ATGATAAACA AAGAAATACA AGATATAAAA 89400 |||||||||| |||||||| | || |||| || || ||||| | |||||||||| |||||||||| AAAACATATA TACCTATACT AAGTAAACGA ATAATAAATA AAGAAATACA AGATATAAAA 601 GCTAAATCAC CAATAAAATA TGTACATTTA GGAGGAACAG AAATATTAAT AAAAGCCTGC 89460 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| || GCTAAAACAC CAATAAAATA TGTACATTTA GGAGGAACAG AAATATTAAT AAAAGCTTGT 661 TTTAGAGAAG GAATAGATAC ACCTATAGAA ATATATTTAG CAGATGATAG AATTGTACAC 89520 |||||||||| |||||||||| |||||| ||| ||||| |||| |||||||||| |||| ||||| TTTAGAGAAG GAATAGATAC ACCTATTGAA ATATACTTAG CAGATGATAG AATTATACAC 721 CCTATAGAAA AAAGCGTAAT TAGTGCAGTA AAAGGAAACT T 89561 |||||||||| |||| ||||| |||||||||| |||||||||| | CCTATAGAAA AAAGTGTAAT TAGTGCAGTA AAAGGAAACT T 762 hqPGS_C10HBa0111D09.1+_SGN-E343544+ (88802 89561) ******************************************************************************** EST sequence 99 -strand 638 n (File: SGN-E276276-) 1 GAGGTAAAAG TAGAATGGTC ATAGATTATC GTAATCTAAA TGCTAAAACT AAAACATACA 61 ATTACCTAAT ACCAAATAAA ATACTAAAAA TAAGACAAAT ACAAGGATAT AACTATTTTA 121 GTAAATTTGA AAAAAAAAGT ATTTTTATAA TATTATCTTT ATGTCTTTAT TAAAGTAGTT 181 TGTCGTGAAG TGTCGGCCAG AAGATAAGAT GGCCATATGT AAAGTTATGT CGGCAAGTAA 241 TAAATTAAAA GGCCACTAGT AGTTTGTCGT TTTGTGTCGG CCGAATTAAT ATAGGCCAAG 301 TGTAAAGTTA GTGTCGGCCA TTTCTGTTGG CCTAATGTGT AAAAATGTTG TATAAATAGA 361 GGGCTTCTCC CTCAGTAATA AACAAGCTAA AAAAGCTACT TACTCTCCAC TCTCTCTCTT 421 ATTCTCTCGC GCTATTTGTC TACTTATTGC ATTAGTCACG TCTATTTTGA AGTCTTATTT 481 AACTCGTTCG ATGTGAAGCC CTTCCACACC TGTATGAAGC ATCTCCTCTC GGGATTCACC 541 GGACTTCGTA GCTTGAAACA ACCTGTCCTT TTCCTTTTCC CTATGCTGAG GCAGCACCAA 601 CAAATCAATC CATCGAAGTT CCTTTGTCTC TTGATTTT Predicted gene structure (within gDNA segment 90508 to 97089): Exon 1 91118 91265 ( 148 n); cDNA 1 146 ( 146 n); score: 0.905 Intron 1 91266 91659 ( 394 n); Pd: 0.000 (s: 0.80), Pa: 0.000 (s: 0) Exon 2 91660 91692 ( 33 n); cDNA 147 178 ( 32 n); score: 0.636 Intron 2 91693 93528 (1836 n); Pd: 0.916 (s: 0), Pa: 0.000 (s: 0) Exon 3 93529 93554 ( 26 n); cDNA 179 204 ( 26 n); score: 0.769 Intron 3 93555 93587 ( 33 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.66) Exon 4 93588 93764 ( 177 n); cDNA 205 376 ( 172 n); score: 0.667 Intron 4 93765 94002 ( 238 n); Pd: 0.000 (s: 0.70), Pa: 0.862 (s: 0) Exon 5 94003 94013 ( 11 n); cDNA 377 387 ( 11 n); score: 0.818 MATCH C10HBa0111D09.1+ SGN-E276276- 0.775 395 0.619 C PGS_C10HBa0111D09.1+_SGN-E276276- (91118 91265,91660 91692,93529 93554,93588 93764,94003 94013) Alignment (genomic DNA sequence = upper lines): GAGGTAAAAG TAGAATGGTC ATAGATTATC GTAATCTAAA TGCTAAAACC AAAACATACA 91177 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| GAGGTAAAAG TAGAATGGTC ATAGATTATC GTAATCTAAA TGCTAAAACT AAAACATACA 60 ATTATCCAAT ACCAAACAAA ATACTAAAAA TAAGACAAAT ACAAGGATAT AATTATTTCA 91237 |||| | ||| |||||| ||| |||||||||| |||||||||| |||||||||| || ||||| | ATTACCTAAT ACCAAATAAA ATACTAAAAA TAAGACAAAT ACAAGGATAT AACTATTTTA 120 GTAAATTTGA CTGCAAATCA GGATTTTACC ACCTAAAACT AGAAGAAGAA TCTAAACAAT 91297 |||||||||| ||| | | ||||| GTAAATTTGA --AAAAAAAA GTATTTTT.. .......... .......... .......... 146 TAACAGCATT CACAGTACCG CAAGGTTTCT ATGAATGGAA TGTTTTACCT TTTGGATATA 91357 .......... .......... .......... .......... .......... .......... 146 AAAATGCACC AGGTAGATTC CAACATTTTA TGGATAACTG TTTTAACCAG CTAGAAAACT 91417 .......... .......... .......... .......... .......... .......... 146 GTATTGTATA TATAGATGAC ATATTATTAT ATTCTAGAAC ACAAGATGAA CATATAAGAT 91477 .......... .......... .......... .......... .......... .......... 146 TATTGGAAAA ATTTATACAT ATAGTAAAAA ATGCAGGTAT AAGTTTGAGT AAAAGAAAAG 91537 .......... .......... .......... .......... .......... .......... 146 CAGAAATTAT GAAATCACAA ATAGAATTTC TAGGAATACA AATAGATAAA AATGGAATAA 91597 .......... .......... .......... .......... .......... .......... 146 AAATGCAAAC ACATATAGTA CAAAAAATAA TTACTATTGA TGAAAATATA GATACAAAAA 91657 .......... .......... .......... .......... .......... .......... 146 AGAAATTATA ATCCTTTCTA GGATTAGTAA ATCAGGTAAG AGAATATATA CCAAAATTAG 91717 | | ||| || |||| | ||| ||| | || ..ATAATATT AT-CTTTATG TCTTTATTAA AGTAG..... .......... .......... 178 CAGAACATCT AAAACCATTA CATAAAAAAC TTAAAAAAGA TGTAGAATAT CATTTTGATG 91777 .......... .......... .......... .......... .......... .......... 178 ATAAAGATAA AAAACATATA AGAAATATTA AGAATTTATG TAAAAAACTA CCAAAACTAT 91837 .......... .......... .......... .......... .......... .......... 178 ATTTTCCTGA TGAAAATAAA ACATTTACTT ATATTGTCGA AACAGATTCA AGTGATCATA 91897 .......... .......... .......... .......... .......... .......... 178 GTTATGGAGG AGTTTTAAAA TACAAATATG AAAAAGAAAA AATAGAACAC CATTGTAGAT 91957 .......... .......... .......... .......... .......... .......... 178 ATTATTCAGG ATCTTATACA GAAGCACAAA TAAAATGGGA AATAAATAGA AAAGAATTAT 92017 .......... .......... .......... .......... .......... .......... 178 TCGCATTATA TAAATGTTTA TTAGCATTTG AACCATATAT TGTTTACAAT AAATTTATTG 92077 .......... .......... .......... .......... .......... .......... 178 TAAGAACAGA TAACACACAA GTAAAATGGT GGATAACGAA AAAATTAGAT GATTCAGTTA 92137 .......... .......... .......... .......... .......... .......... 178 CAACAAAAGA AATAAGGAGA CTAGTATTAA ACATACTAAA TTTTACATTT ACAATTGAGG 92197 .......... .......... .......... .......... .......... .......... 178 TAATAAAAAC TGACAAAAAT ATGATTGCAG ACTATTTATC AAGACAGAGT TACACAGCCA 92257 .......... .......... .......... .......... .......... .......... 178 GGACAAGATA ATGTTATGGA AAACATACTC AAAACCCTAA CTACACTTTG TACAAAAGTG 92317 .......... .......... .......... .......... .......... .......... 178 GACAGTATGG GATTGAGAAT TCAAAAGCTA GAAGAAAAGG AAGAATCTAC AAGTCAGCAG 92377 .......... .......... .......... .......... .......... .......... 178 CATGACTCTA AAAATGTGGA GCTACGTCGT TCGGCAGACG GTAAAAAGCC AGAACTAGAA 92437 .......... .......... .......... .......... .......... .......... 178 GGAGACGTTG GGAAACTCGA TAAAACCCAT GACAATGTTT GTTTAAATGC AGCTACAGCA 92497 .......... .......... .......... .......... .......... .......... 178 AGCACATCTA CAACAAAAGG AGCTAGTGGA ATAAGATATA CAAATTTAAA TATGAACAAA 92557 .......... .......... .......... .......... .......... .......... 178 ATCTTCGATA AACCATTTAT TCCAAAGAAC CAAAAAGACT CATTATTTAT ACCACCGCAA 92617 .......... .......... .......... .......... .......... .......... 178 ATACATACTT ACTCAGAAAG TTTAAACCAA GATAAAAAAG CCTACAACCA CATAACCCGC 92677 .......... .......... .......... .......... .......... .......... 178 TCATATATTG AAAACCTTTA TAAAATCCAA AATTATTTAA ACTCAACACC TAGATCTCCA 92737 .......... .......... .......... .......... .......... .......... 178 ACTACCAAAA ACCCTAACAC TGATTTTATA ACCCAAAAGC TACAAGGATA TAATAAGTTA 92797 .......... .......... .......... .......... .......... .......... 178 ATAGCACAAC CGGGCACCAA TGCAAATCTA GTAAAAACAT GTTATAGTTA TGGATTACTT 92857 .......... .......... .......... .......... .......... .......... 178 AATACAGTTT ATACCCAAAC AGGAGATGAA ATATCTACCA TACCAGAGCT ATACAAAGCC 92917 .......... .......... .......... .......... .......... .......... 178 TTTATGAACT ATAAAAGAAT TACTAAAGGA ACATTGTTTT ATATAAAGTT TTATTCAGCA 92977 .......... .......... .......... .......... .......... .......... 178 CCAGCAGAGA TATTATTTGA TGAGATAAAA CCAATTATAC AAGTTATAAA AATTGGTTTG 93037 .......... .......... .......... .......... .......... .......... 178 ACCAGAGATA TGATAATTCC AGAAGATATC GGAATACAAC AAGAAATACA AAAGATTGAG 93097 .......... .......... .......... .......... .......... .......... 178 ATACCAGAAT TCTACGCCAA CAAAAGAGTT ATAGGAATAG CAACTATCCT AAATGAACTA 93157 .......... .......... .......... .......... .......... .......... 178 ACTAACAATT ATTTAAACGG AAACTCAGTA TGGAGCTATT ATGTACGAGA GCAAGTTATG 93217 .......... .......... .......... .......... .......... .......... 178 ATATATTCAA ATTCTAAAGA AACCAGAGAA CAAGATATGG AAGAGATACG CCAATGGATA 93277 .......... .......... .......... .......... .......... .......... 178 CTTAGTCTAC TCAAGCCAGA GCAAAAACCA ACAACAAGAG CATTAAGGAA AGGGTTTATT 93337 .......... .......... .......... .......... .......... .......... 178 TCGGAAGAAT TATTGACCAG ATATTGCAAA ATTATTGGAC AAAAATACCC CGACCATATA 93397 .......... .......... .......... .......... .......... .......... 178 TGTTCAAAAT GTCAAGGAGA AGATAATGTC ATACCAGACG TACAAATCGA ATAAGTAAAA 93457 .......... .......... .......... .......... .......... .......... 178 AAAAAATTGT ATTTTATTAA AATTCTGTGT CGGCTGAATA TCAGCCATAT GTAGAAAGAA 93517 .......... .......... .......... .......... .......... .......... 178 ATAATTTTAT TTTTGTCGTG TTGCGTCGGC TATAAAAAGC CAAATTGTAT AAAAGTCGTA 93577 ||||||||| | |||||| | || | .......... .TTTGTCGTG AAGTGTCGGC CAGAAGA... .......... .......... 204 AAGTAAATAG TTTGTCAGCC AATCATGTAA AAAGTTTGTC GGCCAATTAT ATAAAGTAGT 93637 | | ||| || |||| | || | |||| || ||| || ||||| || .......... TAAGATGGCC -AT-ATGT-A AAGTTATGTC GG-CAAGTA- ATAAATTAAA 249 AA-TAGTAAG TATTTTGTTT TCTTGTGTCG GCCGAATAAA GAGAGGCCAT GTGTAAAGTA 93696 | || || ||||| | |||||||| ||||||| || | |||||| ||||||||| AGGCCACTAG TAGTTTGTCG TTTTGTGTCG GCCGAATTAA TATAGGCCAA GTGTAAAGTT 309 TGTGTCGGCC A---CTTTTG GCCAAAAGTT TGTAAATTTT GTATATAAAT AGAGGAGCTT 93753 ||||||||| | || ||| ||| || || | |||| || | ||||||| ||||| || | AGTGTCGGCC ATTTCTGTTG GCCTAATGTG TAAAAATGTT G--TATAAAT AGAGG-GC-T 365 TCCTCATAAA TAAAACACAC CTTCATCCTT ACATCTCTCA TCTTTCTGAA TATTCTCTTT 93813 || | | | | TCTCCCTCAG T......... .......... .......... .......... .......... 376 ACGCTTCCAT CCCCTCCATT GGTCCAAGTA TTATCCATAC TAATGTTAGG GTACAATAGG 93873 .......... .......... .......... .......... .......... .......... 376 TTCTTATTTT GCTTGGTTTT GAAATTGAAT TTTCATTTTC CTATTGTAGT ATTTGGTTTA 93933 .......... .......... .......... .......... .......... .......... 376 TTAACTTGTA TAGTCGTGTT TGTATTGTTT AGATGCTAAT GTTGTCTTCT AACTTAATGT 93993 .......... .......... .......... .......... .......... .......... 376 GTTCTCCAGA AAACACAAGC 94013 | | | |||||| .........A ATAAACAAGC 387 hqPGS_C10HBa0111D09.1+_SGN-E276276- (91118 91265,91660 91692,93529 93554) ******************************************************************************** EST sequence 18 +strand 334 n (File: SGN-E391508+) 1 TTTTTTTTTT AAAATATAAC TTTGATGATT TAAAAGAATT CAAAATACAT ATAGATGACC 61 TATTAGAAAA TAATTACATA CAAGAAAGTA ATAGTAAACA TACAAGTCCA GCATTTATAG 121 TTATAAAACA TACCTGAACA AAAAAGAGGT AAAAGTAGAA TGGTCATAGA TTATCGTAAT 181 CTAAATGCTA AAACTAAAAC ATACAATTAC CTAATACCAA ATAAAATACT AAAAATAAGA 241 CAAATACAAG GATATAACTA TTTTAGTAAA TTTGAAAAAA AAAGTATTTT TATAATATTA 301 TCTTTATGCC GTTCTTAATG GAGTTGGGCG AGAA Predicted gene structure (within gDNA segment 89816 to 92609): Exon 1 90982 91247 ( 266 n); cDNA 9 275 ( 267 n); score: 0.923 MATCH C10HBa0111D09.1+ SGN-E391508+ 0.923 266 0.796 C PGS_C10HBa0111D09.1+_SGN-E391508+ (90982 91247) Alignment (genomic DNA sequence = upper lines): TTAAAATATA ACTTTGCTGA TCTAGAAGAA TTTAAAATAC ATATAAATGA ATTGTTAGAA 91041 |||||||||| |||||| ||| | || ||||| || ||||||| ||||| |||| | |||||| TTAAAATATA ACTTTGATGA TTTAAAAGAA TTCAAAATAC ATATAGATGA CCTATTAGAA 68 AATAATTACA TACAAAAAAG CAATAGTAAA CATACAAGTC CAGCATTTAT AGTAATAAAA 91101 |||||||||| ||||| |||| ||||||||| |||||||||| |||||||||| ||| |||||| AATAATTACA TACAAGAAAG TAATAGTAAA CATACAAGTC CAGCATTTAT AGTTATAAAA 128 CATA-GTGAA CAAAAAAGAG GTAAAAGTAG AATGGTCATA GATTATCGTA ATCTAAATGC 91160 |||| |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATACCTGAA CAAAAAAGAG GTAAAAGTAG AATGGTCATA GATTATCGTA ATCTAAATGC 188 TAAAACCAAA ACATACAATT ATCCAATACC AAACAAAATA CTAAAAATAA GACAAATACA 91220 |||||| ||| |||||||||| | | |||||| ||| |||||| |||||||||| |||||||||| TAAAACTAAA ACATACAATT ACCTAATACC AAATAAAATA CTAAAAATAA GACAAATACA 248 AGGATATAAT TATTTCAGTA AATTTGA 91247 ||||||||| ||||| |||| ||||||| AGGATATAAC TATTTTAGTA AATTTGA 275 hqPGS_C10HBa0111D09.1+_SGN-E391508+ (90982 91247) ******************************************************************************** EST sequence 63 -strand 731 n (File: SGN-E550037-) 1 AAAGTATATA AGTATTGTTG TTCGGTTGAA TATCAGGCAT ATGTATAAAG TAAGAGTCTT 61 CTTATTTTTG TCGTCTTGCG TCGGCTGAAA AAGTCAAATG TACAAAAGTC GTAAAGTAAA 121 TAGTTGTCGG GCCAATCATG TAAAAAGTTT GTCGGCCAAT TATGTAAAGT AAATAGTATG 181 ACGGTGTAAT TTATGTGTAT AAATAGAGGA GCTTTCCTCA TAAATAAAAC ACACCTTCAT 241 CCTTACATCT CTCATCTTTC TGAATACTCT CTCTTTACGC TTGCACCCCA AAATTGGTAT 301 CAGAGCTAGA TAGTTAACAA AATAAGCTAA TAACTATGGA GAAATCCGAA GCTACAAATC 361 TACAAAATCA GGTATATACT ATTAAATTTA TGAGTAGCTA AATTTTATTT ATTCCTGAAA 421 ATCTCTTGTT GATTATAATT GTTTATCATG ACTTAATAAT ACTTTAATAA GCATCTTTAG 481 AAGGTTTACT ACAGAAATAT TCTCTGAATG AGTATGCCCA GACTATGTCA TCCTAAGGTT 541 GAAACCGGTA GGCAAGAGGG CCGTTTAGGG GAGTAAACAA AGTTGAGGCG CTGTTAGGGT 601 AACTAATAAA AGAAGAAAGC TGTAGTGGTG ACTAGACGAG ATGATTATTA AATCATTATT 661 ATTTCGTAAT AAATAAGTAT AATCCATTAA GAGCTTGGAA GGAATAAAAC TTTTAGCAAA 721 AATGAGGAAG A Predicted gene structure (within gDNA segment 91928 to 99055): Exon 1 93472 93646 ( 175 n); cDNA 7 180 ( 174 n); score: 0.800 Intron 1 93647 93719 ( 73 n); Pd: 0.000 (s: 0.92), Pa: 0.000 (s: 0.88) Exon 2 93720 93834 ( 115 n); cDNA 181 296 ( 116 n); score: 0.861 Intron 2 93835 94002 ( 168 n); Pd: 0.392 (s: 0.79), Pa: 0.862 (s: 0) Exon 3 94003 94013 ( 11 n); cDNA 297 306 ( 10 n); score: 0.545 Intron 3 94014 96958 (2945 n); Pd: 0.283 (s: 0), Pa: 0.000 (s: 0) Exon 4 96959 96977 ( 19 n); cDNA 307 323 ( 17 n); score: 0.737 MATCH C10HBa0111D09.1+ SGN-E550037- 0.824 320 0.438 C PGS_C10HBa0111D09.1+_SGN-E550037- (93472 93646,93720 93834,94003 94013,96959 96977) Alignment (genomic DNA sequence = upper lines): TATTAAAATT CTGTGTCGGC TGAATATCAG CCATATGTAG AAAGAAATAA T-TT--TATT 93528 ||| | ||| | |||| |||||||||| |||||||| |||| || | | || |||| TATAAGTATT GTTGTTCGGT TGAATATCAG GCATATGTAT AAAGTAAGAG TCTTCTTATT 66 TTTGTCGTGT TGCGTCGGCT ATAAAAAGCC AAATTGTATA AAAGTCGTAA AGTAAATAGT 93588 |||||||| | |||||||||| |||||| | ||| |||| | |||||||||| ||||||||| TTTGTCGTCT TGCGTCGGCT -GAAAAAGTC AAA-TGTACA AAAGTCGTAA AGTAAATAG- 123 TTGTC-AGCC AATCATGTAA AAAGTTTGTC GGCCAATTAT ATAAAGTAGT AATAGTAAGT 93647 ||||| ||| |||||||||| |||||||||| |||||||||| ||||||| ||||||| | TTGTCGGGCC AATCATGTAA AAAGTTTGTC GGCCAATTAT GTAAAGTA-- AATAGTATG. 180 ATTTTGTTTT CTTGTGTCGG CCGAATAAAG AGAGGCCATG TGTAAAGTAT GTGTCGGCCA 93707 .......... .......... .......... .......... .......... .......... 180 CTTTTGGCCA AAAGTTTGTA AATTTTGTAT ATAAATAGAG GAGCTTTCCT CATAAATAAA 93767 | |||| | || ||| | |||||||||| |||||||||| |||||||||| .......... ..ACGGTGTA ATTTATGTGT ATAAATAGAG GAGCTTTCCT CATAAATAAA 228 ACACACCTTC ATCCTTACAT CTCTCATCTT TCTGAATA-T -TCTCTTTAC GCTTCCATCC 93825 |||||||||| |||||||||| |||||||||| |||||||| | ||||||||| |||| || || ACACACCTTC ATCCTTACAT CTCTCATCTT TCTGAATACT CTCTCTTTAC GCTTGCA-CC 287 CCTCCATTGG TCCAAGTATT ATCCATACTA ATGTTAGGGT ACAATAGGTT CTTATTTTGC 93885 || |||| CCAAAATTG. .......... .......... .......... .......... .......... 296 TTGGTTTTGA AATTGAATTT TCATTTTCCT ATTGTAGTAT TTGGTTTATT AACTTGTATA 93945 .......... .......... .......... .......... .......... .......... 296 GTCGTGTTTG TATTGTTTAG ATGCTAATGT TGTCTTCTAA CTTAATGTGT TCTCCAGAAA 94005 | .......... .......... .......... .......... .......... .......GTA 299 ACACAAGCGT ATGTTTTGTT TGATCTCTTG GAATGAAATC AAAAACACAA TCCCCTTCAT 94065 || ||| TCA-GAGC.. .......... .......... .......... .......... .......... 306 AAGCTTGGAA TGAAATCAAA AACAAGAAAA CAGAATACAC TTGCTCCGTC ACAAGAACAT 94125 .......... .......... .......... .......... .......... .......... 306 TCATGTTTGT TGCTTTGGCT CTATAAAAGT ACTGTGTATG TTGGTCCTCT ATGCATTTCT 94185 .......... .......... .......... .......... .......... .......... 306 AAGGATAAGA TATATGTACA CCAACATTTT TGGAGTGTTG AAAAAAGGAA GATATTTCTT 94245 .......... .......... .......... .......... .......... .......... 306 TTTTAATTGA CTTTACTTTC ATTGGTTAAT TTCAAGTTGT AATTTGAATT TAAACTCGTA 94305 .......... .......... .......... .......... .......... .......... 306 AAATAAAAAT TGGTTATTTA TTTACAAGCA AGAATTGGTA TGATCTCGGG CCCGTGCCTT 94365 .......... .......... .......... .......... .......... .......... 306 GCACGGGCAT TCCACATCTA GTCTAGTATA CATACAAGTG ATAGTATTAC ATCTGGATTG 94425 .......... .......... .......... .......... .......... .......... 306 GGTTTATCCC TCTAAGAAGT TACTTCTTTC TAGAAAGTTA AATATGTGTT TATTAATTTA 94485 .......... .......... .......... .......... .......... .......... 306 ATTTTAATTT AATATTTTTT TAAAATAATA TACCTTCTTT ATTCGAAATA GAGAGGTATT 94545 .......... .......... .......... .......... .......... .......... 306 GAATTTGAGC TTTTGGATAT ATATTATATT TTACTTTTTA TATTTTAAAA ATTCTTTTAA 94605 .......... .......... .......... .......... .......... .......... 306 AGATATATAT TGACAATTTT ATAAAATAAA TCTAACCATC AAAAATAATA AATATAAATT 94665 .......... .......... .......... .......... .......... .......... 306 TACTACTAAA TCATAAAAGA AAAAATATGT GTGTGGGAAT ATTTTCTTAA CAAAAAATTT 94725 .......... .......... .......... .......... .......... .......... 306 AAAAATTGAA TCTATAATTG TATTTTTGAT ATATCATATA TCATATATTT ATATAAAAGA 94785 .......... .......... .......... .......... .......... .......... 306 TAGCTCTAGG CCCACCTATA TGGCATCACC ACAAGCAATA ATGTCCTTTT AAAATTACTT 94845 .......... .......... .......... .......... .......... .......... 306 ATTTCCAAAA CTACCCTTCA TATTTCCTTA AAAGATATGA CTTTTATGAA AAGCTACAAT 94905 .......... .......... .......... .......... .......... .......... 306 TTTAATGAAT AGTTGCAACT TTTATCAAAA GTTATGACAT TAATAAAGAG TTGTGAGTTT 94965 .......... .......... .......... .......... .......... .......... 306 TATCAAAAGT TGTGACTTTA ATGAAGAGTT ACTACTTTTA TCAAAAGTCA TGACTTTTAT 95025 .......... .......... .......... .......... .......... .......... 306 GAAAAGTTGT GACATTAATG AAAAATTGCG ACTTTATGAA AAGTTTGTGA CTTTTATGAA 95085 .......... .......... .......... .......... .......... .......... 306 GGTTATGAAT TTTCCGAAGG GTTGCAATTT TTTCAAATAG TTGTAACCTT TCTGTTAAGA 95145 .......... .......... .......... .......... .......... .......... 306 CACAATAAAC ATTTGTTCAC ACTAACCTTT GTTGTCTATA AATAGAAGGA TTTTCTCTCA 95205 .......... .......... .......... .......... .......... .......... 306 TTTTAAAACA ACTAATTTTA ATCTCTTCTA TTTCCGCAAA ATTAAATATT TTTGTACTTT 95265 .......... .......... .......... .......... .......... .......... 306 GCTCCTTTCG AGTGACTTAC TAACACCACT ATTTTTTATC AATAAGTTGG TGAAAAAATC 95325 .......... .......... .......... .......... .......... .......... 306 TTTCATCGTG AGAGGATGTA ATTCATTAAA TCTCTTGTAT TGGAGGGAAG TAGTTTTTTA 95385 .......... .......... .......... .......... .......... .......... 306 AAGGGGATAT TGTGTATTCA GTGAACTCGA TTTTTTCCTT TATATTTCAT TCTATTCATA 95445 .......... .......... .......... .......... .......... .......... 306 CATATCCTGA TATGTTTTTT ACACTCATTA ATTTATGTTT ATGATATTAA TTGTTGTTTT 95505 .......... .......... .......... .......... .......... .......... 306 TGAGTACATG TTTTAAACTT GGTTTTTTAT ATTTCTGCAA AGTTATTTTC TCTGGTTATA 95565 .......... .......... .......... .......... .......... .......... 306 GATAGAAAAT ATATACATGT AGTAGGTATA TTTATTGTAC GGAAAATAAT TATTGTAAAA 95625 .......... .......... .......... .......... .......... .......... 306 GTGCTATGTA TAAGCTTACA TATTATATTT TCTTACGTAA ATATGAAATT TCTCACTTAT 95685 .......... .......... .......... .......... .......... .......... 306 CAATTGAAGA AATTCATTAT ACAAGTTCAA AAGTTATAAT TGCTTTCATG TGCAAGCGTA 95745 .......... .......... .......... .......... .......... .......... 306 ATTTCTTTTT TGAAAATGTT AACAAATTTT TGGATTTTCT TCTTATCCAT ATATCACAAT 95805 .......... .......... .......... .......... .......... .......... 306 TGTATAATTT TTGTAATTTA AATGTTTCTT TTTTATTACG AAACACCTTT GTATATATAT 95865 .......... .......... .......... .......... .......... .......... 306 TCATATGTTC TTCTTTATTT TTCTTTCAAT GTTGATTGAA GAACCAATGA TTGATTATAT 95925 .......... .......... .......... .......... .......... .......... 306 CGTGAATAAG TCATTCATTA GAGGTTCTTG ACTTATGTGA TATTGATAAA ATAATCAAAT 95985 .......... .......... .......... .......... .......... .......... 306 TCATATTGGA GTATTGCCAA TATTTTTTAA GAACCTATTT TCTATTATTT TTAATGTATC 96045 .......... .......... .......... .......... .......... .......... 306 GATATTAGTA AAAATTATTT GCAAGTTCAA TGCAATTATT ATTTAGGACT GGGTAAAGCT 96105 .......... .......... .......... .......... .......... .......... 306 CAAAAAATTT ACCTAGTGTG TATATATATA TATATATATA TATATATATA TATGAAAAGA 96165 .......... .......... .......... .......... .......... .......... 306 AATAGAAGAA GAAATATCTA TACAACTAAT TATAAAATAT AATATAAGAA GTAGAAAGAA 96225 .......... .......... .......... .......... .......... .......... 306 AAGGATCAGA AGAAGAACAA GAAACGTACA ACACTAAAAC CCTAACAGAG CTCCAAATAT 96285 .......... .......... .......... .......... .......... .......... 306 TGCAAAATAG AACAAAATAA CTGAACAACT CTTCTTCAAT CCCCTAAAAA AAGGATGCAC 96345 .......... .......... .......... .......... .......... .......... 306 TACTTCACAT CTCTTCATCA TGCTCCCATG GTGTCACGAT CCAAAATAGA TGTGATGACA 96405 .......... .......... .......... .......... .......... .......... 306 CTCGTCTTAT CTTATCAAGA CAAGTCAGCC TAACATCCTA CTAATATAAT GAATGTGGAA 96465 .......... .......... .......... .......... .......... .......... 306 GTAAAACGAC AGTAAAAGTC TAATACTAGC CTCTAAAGTA TTGCAATCTA ATCAAAAGAA 96525 .......... .......... .......... .......... .......... .......... 306 AAATACAAGT CTCATATGAC ATTGTTTCTA GAGTAGAACA AGATCATAAA TAGCAGTAAG 96585 .......... .......... .......... .......... .......... .......... 306 AAGGTCCACT GAAATGACAA GCAACGGCCT CATAAATCTC CATAAGAAGC CTCATACAAG 96645 .......... .......... .......... .......... .......... .......... 306 GTAAAGAGAA AATATCACAA AGGTCCAAGC TAATAACCTA CAAACAAAAT AGTAGAAGCA 96705 .......... .......... .......... .......... .......... .......... 306 AGGGGTGAGT ATCAATCACA CGGTACTCAG CAAGTAAACC TCTAAACACA ATCTAAGAGG 96765 .......... .......... .......... .......... .......... .......... 306 ATAAAATACG GGTACTCCTT ACACCCCAAC CGAATCTCCA CAACAACAAC GTGCATAAAA 96825 .......... .......... .......... .......... .......... .......... 306 TAAGTTCAAC CTAACAGTGC ACAATTTACA AGCACATATC TCAACAATAT CATTCTAACA 96885 .......... .......... .......... .......... .......... .......... 306 ATCACATATT CTCAACAATA AGCTCAATAA TATTCATCAA TTACAACATC CACAAATAAT 96945 .......... .......... .......... .......... .......... .......... 306 ATCAGCAACA CACAAGATCA AGTTCATAAA AT 96977 |||| |||| | ||| || .......... ...TAGAT-- AGTTAACAAA AT 323 hqPGS_C10HBa0111D09.1+_SGN-E550037- (93472 93646,93720 93834) ******************************************************************************** EST sequence 94 -strand 644 n (File: SGN-E376857-) 1 AAAAAGTCAA ATGTACAAAA GTCGTAAAGT AAATAGTTTG TCGGCCAATC ATGTAAAAAA 61 GTTTGTCGGC CAATTATGTA AAGTAAATAG TATGACGGTG TAATTTATGT GTATAAATAG 121 AGGAGCTTTC CTCATAAATA AAACACACCT TCATCCTTAC ATCTCTCATC TTTCTGAATA 181 CTCTCTCTTT ACGCTTGCAC CCCAAAATTG GTATCAGAGC TAGATAGTTA ACAAAATAAG 241 CTAATAACTA TGGAGAAATC CGAAGCTACA AATCTACAAA ATCAGGTATA TACTATTAAA 301 TTTATGAGTA GCTAAATTTT ATTTATTCCT GAAAATCTCT TGTTGATTAT AATTGTTTAT 361 CATGACTTAA TAATACTTTA ATAAGCATCT TTAGAAGGTT TACTACAGAA ATATTCTCTG 421 AATGAGTATG CCCAGACTAT GTCATCCTAA GGTTGAAACC GGTAGGCAAG AGGGCCGTTT 481 AGGGGAGTAA ACAAAGTTGA GGCGCTGTTA GGGTAACTAA TAAAAGAAGA AAGCTGTAGT 541 GGTGACTAGA CGAGATGATT ATTAAATCAT TATTATTTCA TAATAAATAA GTATAATCCA 601 TTAAGAGCTT GGAAGGAATA AAACTTTTAG CAAAAATGAA TAAG Predicted gene structure (within gDNA segment 92798 to 99045): Exon 1 93551 93646 ( 96 n); cDNA 1 94 ( 94 n); score: 0.891 Intron 1 93647 93719 ( 73 n); Pd: 0.000 (s: 0.87), Pa: 0.000 (s: 0.88) Exon 2 93720 93834 ( 115 n); cDNA 95 210 ( 116 n); score: 0.861 Intron 2 93835 94002 ( 168 n); Pd: 0.392 (s: 0.79), Pa: 0.862 (s: 0) Exon 3 94003 94013 ( 11 n); cDNA 211 220 ( 10 n); score: 0.545 Intron 3 94014 96958 (2945 n); Pd: 0.283 (s: 0), Pa: 0.000 (s: 0) Exon 4 96959 96977 ( 19 n); cDNA 221 237 ( 17 n); score: 0.737 MATCH C10HBa0111D09.1+ SGN-E376857- 0.874 241 0.374 C PGS_C10HBa0111D09.1+_SGN-E376857- (93551 93646,93720 93834,94003 94013,96959 96977) Alignment (genomic DNA sequence = upper lines): AAAAAGCCAA ATTGTATAAA AGTCGTAAAG TAAATAGTTT GTCAGCCAAT CATGT-AAAA 93609 |||||| ||| || ||| ||| |||||||||| |||||||||| ||| |||||| ||||| |||| AAAAAGTCAA AT-GTACAAA AGTCGTAAAG TAAATAGTTT GTCGGCCAAT CATGTAAAAA 59 AGTTTGTCGG CCAATTATAT AAAGTAGTAA TAGTAAGTAT TTTGTTTTCT TGTGTCGGCC 93669 |||||||||| |||||||| | |||||| || ||||| | AGTTTGTCGG CCAATTATGT AAAGTA--AA TAGTATG... .......... .......... 94 GAATAAAGAG AGGCCATGTG TAAAGTATGT GTCGGCCACT TTTGGCCAAA AGTTTGTAAA 93729 | ||||| .......... .......... .......... .......... .......... ACGGTGTAAT 104 TTTTGTATAT AAATAGAGGA GCTTTCCTCA TAAATAAAAC ACACCTTCAT CCTTACATCT 93789 || ||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATGTGTAT AAATAGAGGA GCTTTCCTCA TAAATAAAAC ACACCTTCAT CCTTACATCT 164 CTCATCTTTC TGAATA-T-T CTCTTTACGC TTCCATCCCC TCCATTGGTC CAAGTATTAT 93847 |||||||||| |||||| | | |||||||||| || || |||| |||| CTCATCTTTC TGAATACTCT CTCTTTACGC TTGCA-CCCC AAAATTG... .......... 210 CCATACTAAT GTTAGGGTAC AATAGGTTCT TATTTTGCTT GGTTTTGAAA TTGAATTTTC 93907 .......... .......... .......... .......... .......... .......... 210 ATTTTCCTAT TGTAGTATTT GGTTTATTAA CTTGTATAGT CGTGTTTGTA TTGTTTAGAT 93967 .......... .......... .......... .......... .......... .......... 210 GCTAATGTTG TCTTCTAACT TAATGTGTTC TCCAGAAAAC ACAAGCGTAT GTTTTGTTTG 94027 | | | ||| .......... .......... .......... .....GTATC A-GAGC.... .......... 220 ATCTCTTGGA ATGAAATCAA AAACACAATC CCCTTCATAA GCTTGGAATG AAATCAAAAA 94087 .......... .......... .......... .......... .......... .......... 220 CAAGAAAACA GAATACACTT GCTCCGTCAC AAGAACATTC ATGTTTGTTG CTTTGGCTCT 94147 .......... .......... .......... .......... .......... .......... 220 ATAAAAGTAC TGTGTATGTT GGTCCTCTAT GCATTTCTAA GGATAAGATA TATGTACACC 94207 .......... .......... .......... .......... .......... .......... 220 AACATTTTTG GAGTGTTGAA AAAAGGAAGA TATTTCTTTT TTAATTGACT TTACTTTCAT 94267 .......... .......... .......... .......... .......... .......... 220 TGGTTAATTT CAAGTTGTAA TTTGAATTTA AACTCGTAAA ATAAAAATTG GTTATTTATT 94327 .......... .......... .......... .......... .......... .......... 220 TACAAGCAAG AATTGGTATG ATCTCGGGCC CGTGCCTTGC ACGGGCATTC CACATCTAGT 94387 .......... .......... .......... .......... .......... .......... 220 CTAGTATACA TACAAGTGAT AGTATTACAT CTGGATTGGG TTTATCCCTC TAAGAAGTTA 94447 .......... .......... .......... .......... .......... .......... 220 CTTCTTTCTA GAAAGTTAAA TATGTGTTTA TTAATTTAAT TTTAATTTAA TATTTTTTTA 94507 .......... .......... .......... .......... .......... .......... 220 AAATAATATA CCTTCTTTAT TCGAAATAGA GAGGTATTGA ATTTGAGCTT TTGGATATAT 94567 .......... .......... .......... .......... .......... .......... 220 ATTATATTTT ACTTTTTATA TTTTAAAAAT TCTTTTAAAG ATATATATTG ACAATTTTAT 94627 .......... .......... .......... .......... .......... .......... 220 AAAATAAATC TAACCATCAA AAATAATAAA TATAAATTTA CTACTAAATC ATAAAAGAAA 94687 .......... .......... .......... .......... .......... .......... 220 AAATATGTGT GTGGGAATAT TTTCTTAACA AAAAATTTAA AAATTGAATC TATAATTGTA 94747 .......... .......... .......... .......... .......... .......... 220 TTTTTGATAT ATCATATATC ATATATTTAT ATAAAAGATA GCTCTAGGCC CACCTATATG 94807 .......... .......... .......... .......... .......... .......... 220 GCATCACCAC AAGCAATAAT GTCCTTTTAA AATTACTTAT TTCCAAAACT ACCCTTCATA 94867 .......... .......... .......... .......... .......... .......... 220 TTTCCTTAAA AGATATGACT TTTATGAAAA GCTACAATTT TAATGAATAG TTGCAACTTT 94927 .......... .......... .......... .......... .......... .......... 220 TATCAAAAGT TATGACATTA ATAAAGAGTT GTGAGTTTTA TCAAAAGTTG TGACTTTAAT 94987 .......... .......... .......... .......... .......... .......... 220 GAAGAGTTAC TACTTTTATC AAAAGTCATG ACTTTTATGA AAAGTTGTGA CATTAATGAA 95047 .......... .......... .......... .......... .......... .......... 220 AAATTGCGAC TTTATGAAAA GTTTGTGACT TTTATGAAGG TTATGAATTT TCCGAAGGGT 95107 .......... .......... .......... .......... .......... .......... 220 TGCAATTTTT TCAAATAGTT GTAACCTTTC TGTTAAGACA CAATAAACAT TTGTTCACAC 95167 .......... .......... .......... .......... .......... .......... 220 TAACCTTTGT TGTCTATAAA TAGAAGGATT TTCTCTCATT TTAAAACAAC TAATTTTAAT 95227 .......... .......... .......... .......... .......... .......... 220 CTCTTCTATT TCCGCAAAAT TAAATATTTT TGTACTTTGC TCCTTTCGAG TGACTTACTA 95287 .......... .......... .......... .......... .......... .......... 220 ACACCACTAT TTTTTATCAA TAAGTTGGTG AAAAAATCTT TCATCGTGAG AGGATGTAAT 95347 .......... .......... .......... .......... .......... .......... 220 TCATTAAATC TCTTGTATTG GAGGGAAGTA GTTTTTTAAA GGGGATATTG TGTATTCAGT 95407 .......... .......... .......... .......... .......... .......... 220 GAACTCGATT TTTTCCTTTA TATTTCATTC TATTCATACA TATCCTGATA TGTTTTTTAC 95467 .......... .......... .......... .......... .......... .......... 220 ACTCATTAAT TTATGTTTAT GATATTAATT GTTGTTTTTG AGTACATGTT TTAAACTTGG 95527 .......... .......... .......... .......... .......... .......... 220 TTTTTTATAT TTCTGCAAAG TTATTTTCTC TGGTTATAGA TAGAAAATAT ATACATGTAG 95587 .......... .......... .......... .......... .......... .......... 220 TAGGTATATT TATTGTACGG AAAATAATTA TTGTAAAAGT GCTATGTATA AGCTTACATA 95647 .......... .......... .......... .......... .......... .......... 220 TTATATTTTC TTACGTAAAT ATGAAATTTC TCACTTATCA ATTGAAGAAA TTCATTATAC 95707 .......... .......... .......... .......... .......... .......... 220 AAGTTCAAAA GTTATAATTG CTTTCATGTG CAAGCGTAAT TTCTTTTTTG AAAATGTTAA 95767 .......... .......... .......... .......... .......... .......... 220 CAAATTTTTG GATTTTCTTC TTATCCATAT ATCACAATTG TATAATTTTT GTAATTTAAA 95827 .......... .......... .......... .......... .......... .......... 220 TGTTTCTTTT TTATTACGAA ACACCTTTGT ATATATATTC ATATGTTCTT CTTTATTTTT 95887 .......... .......... .......... .......... .......... .......... 220 CTTTCAATGT TGATTGAAGA ACCAATGATT GATTATATCG TGAATAAGTC ATTCATTAGA 95947 .......... .......... .......... .......... .......... .......... 220 GGTTCTTGAC TTATGTGATA TTGATAAAAT AATCAAATTC ATATTGGAGT ATTGCCAATA 96007 .......... .......... .......... .......... .......... .......... 220 TTTTTTAAGA ACCTATTTTC TATTATTTTT AATGTATCGA TATTAGTAAA AATTATTTGC 96067 .......... .......... .......... .......... .......... .......... 220 AAGTTCAATG CAATTATTAT TTAGGACTGG GTAAAGCTCA AAAAATTTAC CTAGTGTGTA 96127 .......... .......... .......... .......... .......... .......... 220 TATATATATA TATATATATA TATATATATA TGAAAAGAAA TAGAAGAAGA AATATCTATA 96187 .......... .......... .......... .......... .......... .......... 220 CAACTAATTA TAAAATATAA TATAAGAAGT AGAAAGAAAA GGATCAGAAG AAGAACAAGA 96247 .......... .......... .......... .......... .......... .......... 220 AACGTACAAC ACTAAAACCC TAACAGAGCT CCAAATATTG CAAAATAGAA CAAAATAACT 96307 .......... .......... .......... .......... .......... .......... 220 GAACAACTCT TCTTCAATCC CCTAAAAAAA GGATGCACTA CTTCACATCT CTTCATCATG 96367 .......... .......... .......... .......... .......... .......... 220 CTCCCATGGT GTCACGATCC AAAATAGATG TGATGACACT CGTCTTATCT TATCAAGACA 96427 .......... .......... .......... .......... .......... .......... 220 AGTCAGCCTA ACATCCTACT AATATAATGA ATGTGGAAGT AAAACGACAG TAAAAGTCTA 96487 .......... .......... .......... .......... .......... .......... 220 ATACTAGCCT CTAAAGTATT GCAATCTAAT CAAAAGAAAA ATACAAGTCT CATATGACAT 96547 .......... .......... .......... .......... .......... .......... 220 TGTTTCTAGA GTAGAACAAG ATCATAAATA GCAGTAAGAA GGTCCACTGA AATGACAAGC 96607 .......... .......... .......... .......... .......... .......... 220 AACGGCCTCA TAAATCTCCA TAAGAAGCCT CATACAAGGT AAAGAGAAAA TATCACAAAG 96667 .......... .......... .......... .......... .......... .......... 220 GTCCAAGCTA ATAACCTACA AACAAAATAG TAGAAGCAAG GGGTGAGTAT CAATCACACG 96727 .......... .......... .......... .......... .......... .......... 220 GTACTCAGCA AGTAAACCTC TAAACACAAT CTAAGAGGAT AAAATACGGG TACTCCTTAC 96787 .......... .......... .......... .......... .......... .......... 220 ACCCCAACCG AATCTCCACA ACAACAACGT GCATAAAATA AGTTCAACCT AACAGTGCAC 96847 .......... .......... .......... .......... .......... .......... 220 AATTTACAAG CACATATCTC AACAATATCA TTCTAACAAT CACATATTCT CAACAATAAG 96907 .......... .......... .......... .......... .......... .......... 220 CTCAATAATA TTCATCAATT ACAACATCCA CAAATAATAT CAGCAACACA CAAGATCAAG 96967 |||| || .......... .......... .......... .......... .......... .TAGAT--AG 227 TTCATAAAAT 96977 || | ||||| TTAACAAAAT 237 hqPGS_C10HBa0111D09.1+_SGN-E376857- (93551 93646,93720 93834) ******************************************************************************** EST sequence 74 -strand 637 n (File: SGN-E232987-) 1 TCAAATGTAC AAAAGTCGTA AAGTAAATAG TTTGTCGGCC AATCATGTAA AAAGTTTGTC 61 GGCCAATTAT GTAAAGTAAA TAGTATGACG GTGTAATTTA TGTGTATAAA TAGAGGAGCT 121 TTCCTCATAA ATAAAACACA CCTTCATCCT TACATCTCTC ATCTTTCTGA ATACTCTCTC 181 TTTACGCTTG CACCCCAAAA TTGGTATCAG AGCTAGATAG TTAACAAAAT AAGCTAATAA 241 CTATGGAGAA ATCCGAAGCT ACAAATCTAC AAAATCAGGT ATATACTATT AAATTTATGA 301 GTAGCTAAAT TTTATTTATT CCTGAAAATC TCTTGTTGAT TATAATTGTT TATCATGACT 361 TAATAATACT TTAATAAGCA TCTTTAGAAG GTTTACTACA GAAATATTCT CTGAATGAGT 421 ATGCCCAGAC TATGTCATCC TAAGGTTGAA ACCGGTAGGC AAGAGGGCCG TTTAGGGGAG 481 TAAACAAAGT TGAGGCGCTG TTAGGGTAAC TAATAAAAGA AGAAAGCTGT AGTGGTGACT 541 AGACGAGATG ATTATTAAAT CATTATTATT TCATAATAAA TAAGTATAAT CCATTAAGAG 601 CTTGGAAGGA ATAAAACTTT TAGCAAAAAT GAATAAG Predicted gene structure (within gDNA segment 92858 to 99045): Exon 1 93563 93646 ( 84 n); cDNA 6 87 ( 82 n); score: 0.929 Intron 1 93647 93719 ( 73 n); Pd: 0.000 (s: 0.92), Pa: 0.000 (s: 0.88) Exon 2 93720 93834 ( 115 n); cDNA 88 203 ( 116 n); score: 0.861 Intron 2 93835 94002 ( 168 n); Pd: 0.392 (s: 0.79), Pa: 0.862 (s: 0) Exon 3 94003 94013 ( 11 n); cDNA 204 213 ( 10 n); score: 0.545 Intron 3 94014 96958 (2945 n); Pd: 0.283 (s: 0), Pa: 0.000 (s: 0) Exon 4 96959 96977 ( 19 n); cDNA 214 230 ( 17 n); score: 0.737 MATCH C10HBa0111D09.1+ SGN-E232987- 0.889 229 0.359 C PGS_C10HBa0111D09.1+_SGN-E232987- (93563 93646,93720 93834,94003 94013,96959 96977) Alignment (genomic DNA sequence = upper lines): TGTATAAAAG TCGTAAAGTA AATAGTTTGT CAGCCAATCA TGTAAAAAGT TTGTCGGCCA 93622 |||| ||||| |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| TGTACAAAAG TCGTAAAGTA AATAGTTTGT CGGCCAATCA TGTAAAAAGT TTGTCGGCCA 65 ATTATATAAA GTAGTAATAG TAAGTATTTT GTTTTCTTGT GTCGGCCGAA TAAAGAGAGG 93682 ||||| |||| ||| ||||| || | ATTATGTAAA GTA--AATAG TATG...... .......... .......... .......... 87 CCATGTGTAA AGTATGTGTC GGCCACTTTT GGCCAAAAGT TTGTAAATTT TGTATATAAA 93742 | ||||| || ||| |||||| .......... .......... .......... .......ACG GTGTAATTTA TGTGTATAAA 110 TAGAGGAGCT TTCCTCATAA ATAAAACACA CCTTCATCCT TACATCTCTC ATCTTTCTGA 93802 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGAGGAGCT TTCCTCATAA ATAAAACACA CCTTCATCCT TACATCTCTC ATCTTTCTGA 170 ATA-T-TCTC TTTACGCTTC CATCCCCTCC ATTGGTCCAA GTATTATCCA TACTAATGTT 93860 ||| | |||| ||||||||| || |||| |||| ATACTCTCTC TTTACGCTTG CA-CCCCAAA ATTG...... .......... .......... 203 AGGGTACAAT AGGTTCTTAT TTTGCTTGGT TTTGAAATTG AATTTTCATT TTCCTATTGT 93920 .......... .......... .......... .......... .......... .......... 203 AGTATTTGGT TTATTAACTT GTATAGTCGT GTTTGTATTG TTTAGATGCT AATGTTGTCT 93980 .......... .......... .......... .......... .......... .......... 203 TCTAACTTAA TGTGTTCTCC AGAAAACACA AGCGTATGTT TTGTTTGATC TCTTGGAATG 94040 | || ||| .......... .......... ..GTATCA-G AGC....... .......... .......... 213 AAATCAAAAA CACAATCCCC TTCATAAGCT TGGAATGAAA TCAAAAACAA GAAAACAGAA 94100 .......... .......... .......... .......... .......... .......... 213 TACACTTGCT CCGTCACAAG AACATTCATG TTTGTTGCTT TGGCTCTATA AAAGTACTGT 94160 .......... .......... .......... .......... .......... .......... 213 GTATGTTGGT CCTCTATGCA TTTCTAAGGA TAAGATATAT GTACACCAAC ATTTTTGGAG 94220 .......... .......... .......... .......... .......... .......... 213 TGTTGAAAAA AGGAAGATAT TTCTTTTTTA ATTGACTTTA CTTTCATTGG TTAATTTCAA 94280 .......... .......... .......... .......... .......... .......... 213 GTTGTAATTT GAATTTAAAC TCGTAAAATA AAAATTGGTT ATTTATTTAC AAGCAAGAAT 94340 .......... .......... .......... .......... .......... .......... 213 TGGTATGATC TCGGGCCCGT GCCTTGCACG GGCATTCCAC ATCTAGTCTA GTATACATAC 94400 .......... .......... .......... .......... .......... .......... 213 AAGTGATAGT ATTACATCTG GATTGGGTTT ATCCCTCTAA GAAGTTACTT CTTTCTAGAA 94460 .......... .......... .......... .......... .......... .......... 213 AGTTAAATAT GTGTTTATTA ATTTAATTTT AATTTAATAT TTTTTTAAAA TAATATACCT 94520 .......... .......... .......... .......... .......... .......... 213 TCTTTATTCG AAATAGAGAG GTATTGAATT TGAGCTTTTG GATATATATT ATATTTTACT 94580 .......... .......... .......... .......... .......... .......... 213 TTTTATATTT TAAAAATTCT TTTAAAGATA TATATTGACA ATTTTATAAA ATAAATCTAA 94640 .......... .......... .......... .......... .......... .......... 213 CCATCAAAAA TAATAAATAT AAATTTACTA CTAAATCATA AAAGAAAAAA TATGTGTGTG 94700 .......... .......... .......... .......... .......... .......... 213 GGAATATTTT CTTAACAAAA AATTTAAAAA TTGAATCTAT AATTGTATTT TTGATATATC 94760 .......... .......... .......... .......... .......... .......... 213 ATATATCATA TATTTATATA AAAGATAGCT CTAGGCCCAC CTATATGGCA TCACCACAAG 94820 .......... .......... .......... .......... .......... .......... 213 CAATAATGTC CTTTTAAAAT TACTTATTTC CAAAACTACC CTTCATATTT CCTTAAAAGA 94880 .......... .......... .......... .......... .......... .......... 213 TATGACTTTT ATGAAAAGCT ACAATTTTAA TGAATAGTTG CAACTTTTAT CAAAAGTTAT 94940 .......... .......... .......... .......... .......... .......... 213 GACATTAATA AAGAGTTGTG AGTTTTATCA AAAGTTGTGA CTTTAATGAA GAGTTACTAC 95000 .......... .......... .......... .......... .......... .......... 213 TTTTATCAAA AGTCATGACT TTTATGAAAA GTTGTGACAT TAATGAAAAA TTGCGACTTT 95060 .......... .......... .......... .......... .......... .......... 213 ATGAAAAGTT TGTGACTTTT ATGAAGGTTA TGAATTTTCC GAAGGGTTGC AATTTTTTCA 95120 .......... .......... .......... .......... .......... .......... 213 AATAGTTGTA ACCTTTCTGT TAAGACACAA TAAACATTTG TTCACACTAA CCTTTGTTGT 95180 .......... .......... .......... .......... .......... .......... 213 CTATAAATAG AAGGATTTTC TCTCATTTTA AAACAACTAA TTTTAATCTC TTCTATTTCC 95240 .......... .......... .......... .......... .......... .......... 213 GCAAAATTAA ATATTTTTGT ACTTTGCTCC TTTCGAGTGA CTTACTAACA CCACTATTTT 95300 .......... .......... .......... .......... .......... .......... 213 TTATCAATAA GTTGGTGAAA AAATCTTTCA TCGTGAGAGG ATGTAATTCA TTAAATCTCT 95360 .......... .......... .......... .......... .......... .......... 213 TGTATTGGAG GGAAGTAGTT TTTTAAAGGG GATATTGTGT ATTCAGTGAA CTCGATTTTT 95420 .......... .......... .......... .......... .......... .......... 213 TCCTTTATAT TTCATTCTAT TCATACATAT CCTGATATGT TTTTTACACT CATTAATTTA 95480 .......... .......... .......... .......... .......... .......... 213 TGTTTATGAT ATTAATTGTT GTTTTTGAGT ACATGTTTTA AACTTGGTTT TTTATATTTC 95540 .......... .......... .......... .......... .......... .......... 213 TGCAAAGTTA TTTTCTCTGG TTATAGATAG AAAATATATA CATGTAGTAG GTATATTTAT 95600 .......... .......... .......... .......... .......... .......... 213 TGTACGGAAA ATAATTATTG TAAAAGTGCT ATGTATAAGC TTACATATTA TATTTTCTTA 95660 .......... .......... .......... .......... .......... .......... 213 CGTAAATATG AAATTTCTCA CTTATCAATT GAAGAAATTC ATTATACAAG TTCAAAAGTT 95720 .......... .......... .......... .......... .......... .......... 213 ATAATTGCTT TCATGTGCAA GCGTAATTTC TTTTTTGAAA ATGTTAACAA ATTTTTGGAT 95780 .......... .......... .......... .......... .......... .......... 213 TTTCTTCTTA TCCATATATC ACAATTGTAT AATTTTTGTA ATTTAAATGT TTCTTTTTTA 95840 .......... .......... .......... .......... .......... .......... 213 TTACGAAACA CCTTTGTATA TATATTCATA TGTTCTTCTT TATTTTTCTT TCAATGTTGA 95900 .......... .......... .......... .......... .......... .......... 213 TTGAAGAACC AATGATTGAT TATATCGTGA ATAAGTCATT CATTAGAGGT TCTTGACTTA 95960 .......... .......... .......... .......... .......... .......... 213 TGTGATATTG ATAAAATAAT CAAATTCATA TTGGAGTATT GCCAATATTT TTTAAGAACC 96020 .......... .......... .......... .......... .......... .......... 213 TATTTTCTAT TATTTTTAAT GTATCGATAT TAGTAAAAAT TATTTGCAAG TTCAATGCAA 96080 .......... .......... .......... .......... .......... .......... 213 TTATTATTTA GGACTGGGTA AAGCTCAAAA AATTTACCTA GTGTGTATAT ATATATATAT 96140 .......... .......... .......... .......... .......... .......... 213 ATATATATAT ATATATATGA AAAGAAATAG AAGAAGAAAT ATCTATACAA CTAATTATAA 96200 .......... .......... .......... .......... .......... .......... 213 AATATAATAT AAGAAGTAGA AAGAAAAGGA TCAGAAGAAG AACAAGAAAC GTACAACACT 96260 .......... .......... .......... .......... .......... .......... 213 AAAACCCTAA CAGAGCTCCA AATATTGCAA AATAGAACAA AATAACTGAA CAACTCTTCT 96320 .......... .......... .......... .......... .......... .......... 213 TCAATCCCCT AAAAAAAGGA TGCACTACTT CACATCTCTT CATCATGCTC CCATGGTGTC 96380 .......... .......... .......... .......... .......... .......... 213 ACGATCCAAA ATAGATGTGA TGACACTCGT CTTATCTTAT CAAGACAAGT CAGCCTAACA 96440 .......... .......... .......... .......... .......... .......... 213 TCCTACTAAT ATAATGAATG TGGAAGTAAA ACGACAGTAA AAGTCTAATA CTAGCCTCTA 96500 .......... .......... .......... .......... .......... .......... 213 AAGTATTGCA ATCTAATCAA AAGAAAAATA CAAGTCTCAT ATGACATTGT TTCTAGAGTA 96560 .......... .......... .......... .......... .......... .......... 213 GAACAAGATC ATAAATAGCA GTAAGAAGGT CCACTGAAAT GACAAGCAAC GGCCTCATAA 96620 .......... .......... .......... .......... .......... .......... 213 ATCTCCATAA GAAGCCTCAT ACAAGGTAAA GAGAAAATAT CACAAAGGTC CAAGCTAATA 96680 .......... .......... .......... .......... .......... .......... 213 ACCTACAAAC AAAATAGTAG AAGCAAGGGG TGAGTATCAA TCACACGGTA CTCAGCAAGT 96740 .......... .......... .......... .......... .......... .......... 213 AAACCTCTAA ACACAATCTA AGAGGATAAA ATACGGGTAC TCCTTACACC CCAACCGAAT 96800 .......... .......... .......... .......... .......... .......... 213 CTCCACAACA ACAACGTGCA TAAAATAAGT TCAACCTAAC AGTGCACAAT TTACAAGCAC 96860 .......... .......... .......... .......... .......... .......... 213 ATATCTCAAC AATATCATTC TAACAATCAC ATATTCTCAA CAATAAGCTC AATAATATTC 96920 .......... .......... .......... .......... .......... .......... 213 ATCAATTACA ACATCCACAA ATAATATCAG CAACACACAA GATCAAGTTC ATAAAAT 96977 | ||| |||| | ||||| .......... .......... .......... ........TA GAT--AGTTA ACAAAAT 230 hqPGS_C10HBa0111D09.1+_SGN-E232987- (93563 93646,93720 93834) ******************************************************************************** EST sequence 20 -strand 713 n (File: SGN-E541821-) 1 AGACATGCAT CATTATACTT GACATTGCAT TCCATTGCAT TGCACATACT TACCATTAGT 61 GAACTTGATA TCGTATTTCG CTGATGTTTT GATTGCTTTT CTGCGGAACT TGTGATTGAT 121 CAATATTGAG CTTGTTATTG CGGATATGTA ATTTGTTGAA GTATTGTTGT TGAGGATATG 181 TAATTTGTTG AAGTATTGTT GTTGAGGATA TGTAATTTGT TGAAGTGTTG TTGTTGAGGA 241 TATGTAATTT GCCTAAGTGT TGTTGTTGAG CTATGTGCTA TGTAAATTGT GAGCTGTTAG 301 GTTGGGTTGA TTTTAATGCA GGTTGTATTT GTGGAGGTTC GGTTGGGGGT GGTAGGAGTA 361 CCCGTATTTC ATCCCCTTAG CTTATGTTTA GAGGTTTACT TGCTGAGTAC CGTGTGGTTT 421 GGTACTCACC CCTTGCTTCT ACAAATTTTT GTAGGTTATG AGCCTGGATT TTTGTTGTAC 481 TTGTCAGTCT CTTCTTTTCC GAGGCTTCAT GGAGATTTGT GAGGTAGCTG TTTCCATCTC 541 AGCAGACTTT CTTCTCCATA ATTATGATCT TGTTCTATTC TAGAAACAAG TTCATTTGAG 601 ACTTGAGTTT TTTTCTTTTG AATCTTGTAA TACTTTAGAG GCTTGTACAC GTGACTACCC 661 AGGTCTTGGG GGTTTAATTA AGTTACTTAT ATTTTATTTC TGCAAAAAAA AAA Predicted gene structure (within gDNA segment 102124 to 93387): Exon 1 101434 101417 ( 18 n); cDNA 97 114 ( 18 n); score: 0.778 Intron 1 101416 100418 ( 999 n); Pd: 0.000 (s: 0), Pa: 0.085 (s: 0) Exon 2 100417 100405 ( 13 n); cDNA 115 127 ( 13 n); score: 0.692 Intron 2 100404 100370 ( 35 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 3 100369 100342 ( 28 n); cDNA 128 154 ( 27 n); score: 0.643 Intron 3 100341 99737 ( 605 n); Pd: 0.900 (s: 0), Pa: 0.832 (s: 0) Exon 4 99736 99713 ( 24 n); cDNA 155 177 ( 23 n); score: 0.583 Intron 4 99712 98677 (1036 n); Pd: 0.537 (s: 0), Pa: 0.923 (s: 0) Exon 5 98676 98671 ( 6 n); cDNA 178 183 ( 6 n); score: 0.167 Intron 5 98670 98346 ( 325 n); Pd: 0.578 (s: 0), Pa: 0.863 (s: 0.63) Exon 6 98345 98300 ( 46 n); cDNA 184 227 ( 44 n); score: 0.630 Intron 6 98299 96907 (1393 n); Pd: 0.495 (s: 0.63), Pa: 0.000 (s: 0.72) Exon 7 96906 96496 ( 411 n); cDNA 228 640 ( 413 n); score: 0.759 PPA cDNA 704 713 MATCH C10HBa0111D09.1- SGN-E541821- 0.759 546 0.766 C PGS_C10HBa0111D09.1-_SGN-E541821- (101434 101417,100417 100405,100369 100342,99736 99713,98676 98671,98345 98300,96906 96496) Alignment (genomic DNA sequence = upper lines): TTTACCACAG AACTTGTGGG GGGAAGCTAT CCTTACAGCA AATCAGATAC TTAAGAGAGT 101375 ||| | | | |||||||| TTTTCTGCGG AACTTGTG.. .......... .......... .......... .......... 114 GCCTCACTCA AAGACAAATG TAATTCCATA TGAGAAATGG AAAGGTAAAA AACCCAATTT 101315 .......... .......... .......... .......... .......... .......... 114 GAAATATTTC AAAGTGTGGG GTGTCTAGCC AAAGTCCAAG TTCCTATACC TAAGAGGGTA 101255 .......... .......... .......... .......... .......... .......... 114 AAAATAGGAC CTAAGACTGT GGATTGTGTA TTCATTGGAT ATGCGACAAA CAGTAAGGCA 101195 .......... .......... .......... .......... .......... .......... 114 TGTCGATTTT TGGTTCATAA GTCCGAACAT CCAGATATTC ATGATAATAC GGTAATGGAA 101135 .......... .......... .......... .......... .......... .......... 114 TCAGATAGTG GTGAATTTTT TGAACATATC TATCCGTATA AAACTAGACT TGAGTCATCT 101075 .......... .......... .......... .......... .......... .......... 114 AGTGGGGGAT CTAAACAACC CAGAGAAGAA CCAAAAGAGA ATGAACAAAA TGAAGAAAGT 101015 .......... .......... .......... .......... .......... .......... 114 CCAAGACGCA GTAAACGTCA AAAGACATCT ACTTCATTTG GATCAGATTT TGTAACATTT 100955 .......... .......... .......... .......... .......... .......... 114 CTTCTTGAAA GTGAGCCTCA AACATTCAAG GAAGCAATGT TGTCTAGTGA CTCATCCTCT 100895 .......... .......... .......... .......... .......... .......... 114 TGGAAGGAGG CTGTTAATAG TGAAATTGAA TCAATCTTAA GCAATCATAC TTGGGAGTTG 100835 .......... .......... .......... .......... .......... .......... 114 GTTGATCTTC CTTCAGGGAA CAAACCCTTG GGTTCAAAAT GGATCTTTAA AAGGAAGATG 100775 .......... .......... .......... .......... .......... .......... 114 AAAGACGATG GAACTATTGA CAAATATAAA GCAAGACTTG TTGTCAAAGG TTTTAGACAA 100715 .......... .......... .......... .......... .......... .......... 114 AAAGAAAGTC TTGATTATTT TGACACATAC TCACCAGTGA CTATGATTAC ATCAATTCGG 100655 .......... .......... .......... .......... .......... .......... 114 ATGTTTATTG CACTAGCTGC AGTATACGGT CTTGAAATTC ATCAAATGGA TGTAAAAACA 100595 .......... .......... .......... .......... .......... .......... 114 GCCTTCTTAA ATGGAGAGCT TGAAGAGGAA ATTTACATAG AACAGCCTGA GGGTTTTGTA 100535 .......... .......... .......... .......... .......... .......... 114 GTTCCTGGTA AAGAAAAGAA AGTGTGCAAA CTTATTAAGT CACTTTATGG GCTAAAACAA 100475 .......... .......... .......... .......... .......... .......... 114 GCACCAAAAC AATGGCATGC AAAGTTTGAT CAAACCATGT TGTCAAATGG ATTTTAGATC 100415 || .......... .......... .......... .......... .......... .......ATT 117 AATGAATATG ATAAATGTGT TTACATTAAA GATACTCCAA ATCAGGAAGT TATTTTATGC 100355 || ||||| || | | || | ||| GATCAATATT .......... .......... .......... .....GAGCT TGTTAT-TGC 141 CTATATGTAG ATGATATGCT TATAATGAGC AAAGACATTT CTAATATAAA AGCTACAAAG 100295 ||||||| | GGATATGTAA TTT....... .......... .......... .......... .......... 154 CGTATGCTTG CTAGTAAGTT TGATATGAAA GATTTAGGAG TTGCTGATGT GATATTAGGA 100235 .......... .......... .......... .......... .......... .......... 154 ATTAAAATTC TTAAAACTCC TAACGGTCTA GCATGGTCTC AAACTCATTA TATTCAAAAG 100175 .......... .......... .......... .......... .......... .......... 154 ATACTTGAAA AATTCAAATT TTTGAATTTT AAAATGTCAA AGACTCCAAT TGATGTAAAT 100115 .......... .......... .......... .......... .......... .......... 154 CTTCATCTTG CAAAGAATAA AGGCGAAAGT CAGTCTCAAT TTGACTATGC TAGCGTATTG 100055 .......... .......... .......... .......... .......... .......... 154 GGAAGCTTAA TGTATGTCAT GAATTGTACA CGACCAGACA TAGCTTGCTC TATCAGTAAA 99995 .......... .......... .......... .......... .......... .......... 154 CTGAGTCGAT ACACTAGTAA TCCTAATCAT AATCATTGGT TAGCAATGAA GAGAGTTTTG 99935 .......... .......... .......... .......... .......... .......... 154 GGATACTTAG ATGACACTCA AAACTATGCT TTACATTACA AAAGATATCC AGCCGTTCTT 99875 .......... .......... .......... .......... .......... .......... 154 GAAGGATATA GTGATGCAAA TTGGATTACT GGGTCAACTG AAACAAAATC CACAAGTGGA 99815 .......... .......... .......... .......... .......... .......... 154 TACGTTTTTA CTATTGGTGG AGGAGCAATA TCTTGGAAAT CATCCAAACA AACATGTATA 99755 .......... .......... .......... .......... .......... .......... 154 GCTCGCTCTA CAATGCAGTC TGAATTCATT GCTTTAGACA AGGCAGGTGA AGAAGCTGAA 99695 |||| | ||| | | | || | .......... ........GT TGAAGT-ATT GTTGTTGAGG AT........ .......... 177 TGACTCCGGA ATTTCTTAGA AGATATTCCA TTTTGGCCCA AACAATGGCC CCTATATGCA 99635 .......... .......... .......... .......... .......... .......... 177 TACATTGTGA TAGTCAAGCT GCAATAGGAA GGGCTGGAAG CATTAAGTAT AACGGCAAGT 99575 .......... .......... .......... .......... .......... .......... 177 CTCGTCACAT AAGACGAAGA CATAACTCTG TGAGACAACT ACTCTCTAGT GGAATTATCA 99515 .......... .......... .......... .......... .......... .......... 177 CAATTGACTA TGTCAAGTCA AAAGATAATG TGTCGGATCC ACTTACAAAA GGCCTAAATA 99455 .......... .......... .......... .......... .......... .......... 177 GAGAGGGAGT TGAGAAATCA TCGACGGGAA TGAGACTATG GCCGAGAACA AGTCATCGTG 99395 .......... .......... .......... .......... .......... .......... 177 GTGGTAACTC TACCTAGAAG ACTGGAGATC CCAAGATCTA GGTTCAAGGA GATAAAACAA 99335 .......... .......... .......... .......... .......... .......... 177 AGTCATTGAT GACGGTTCAA CATTGTCAAA GAAAAAAAAT ATTATTATTA TTTTCTGGTC 99275 .......... .......... .......... .......... .......... .......... 177 CATTCTCATG ATGAGACAAT GTTTAGTAAC CAGGATAAAG ACATAAGGAA TTTTTAATGG 99215 .......... .......... .......... .......... .......... .......... 177 TTTCTAAGTT TGATACAGGG AATATAAAAT GGTGTATCTA TGGGATAACA CATTTAGAAA 99155 .......... .......... .......... .......... .......... .......... 177 TCACCTATGT AAGTGTGAAG TGTAAGCCGC TTCAAGGAGA ATCCGGTAAG GCCAGTTCTT 99095 .......... .......... .......... .......... .......... .......... 177 TAAGCACTTA CTATCCAAGA TGTGTTCATG GCTGAAACGA ACAAAACAAT GAGAACTAAG 99035 .......... .......... .......... .......... .......... .......... 177 AACAGTTCAA GGGTTGATTG TGTGATATGT TGTCTAGGTA TACACCAAAG CTCGACGGTT 98975 .......... .......... .......... .......... .......... .......... 177 CAAAGATATC AAATCTACCG ATTGACCGAG TATATCCGAT ATATGTTCAC TACGGAAAGT 98915 .......... .......... .......... .......... .......... .......... 177 TTAAAGGTAA ACCTACTTAT CCAGATGCGA TTAACCTTTA CCTACAAGAC ACACAAGTTT 98855 .......... .......... .......... .......... .......... .......... 177 TTTCATGCAT ATGTTTTAAC AATAGCCTTC CCCATTCATG TGGGGGATTG TTGGGTTTTA 98795 .......... .......... .......... .......... .......... .......... 177 GCAAATGTGA ATGGGAAAAG AAAAGAGAGA ATATGAAAAG TGAGGGAACT ACTTTGGAGG 98735 .......... .......... .......... .......... .......... .......... 177 GAAAATGAAA AGTCATTTGC AAAGTGCAAA TGAAAAGTCA TTTCTTATAA ATTTGCAGGT 98675 | .......... .......... .......... .......... .......... ........AT 179 AACGGTAACA TTCTGAAAAG TTGTTACTCT TTCCGAAAAG TCGTTACTTT TCGAAAAGTC 98615 GTAA...... .......... .......... .......... .......... .......... 183 GTTACTTTCC AAAAAGTAGT TATTTTCCTA ACAGACACAA TTTTTTCGAA AAGCTGTTAT 98555 .......... .......... .......... .......... .......... .......... 183 TTTTTCCAAA AGACACAACT TTCTGGATAA AATGGGTCTG AACAGATTTC ACTGAAAAGA 98495 .......... .......... .......... .......... .......... .......... 183 CATGTTCCTT GCTGAAAATG GCTATAAAAG GAAGTCAATT TTTGATTTTT TAATCACTGA 98435 .......... .......... .......... .......... .......... .......... 183 AGATTTTTTC TTTCTCTGCA TTTATTTTTC TCTCAAATAA AATCAAAGTG TCGATCGACT 98375 .......... .......... .......... .......... .......... .......... 183 GAGTCTGTGT GACTTGTTGC TGTTTTCAGT TCGTTGAAGT TAAAGAAGTT TGAGGTACCG 98315 | | |||||||| | | | | ||||| | .......... .......... .........T TTGTTGAAGT -ATTGTTG-T TGAGGATATG 212 CTATTTCTTT AACAGGTGTA ATCCGTTTTA TCTTGGGAGA AATTAATCCA TAACCTTGGG 98255 |||| || || | TAATTTGTTG AAGTG..... .......... .......... .......... .......... 227 TACAGTGAGG GGATTAAATT TCTTAAGGAC ACACAGTAGT TTCAGTGGAC TCGGATTAAT 98195 .......... .......... .......... .......... .......... .......... 227 TCCTCTATTT TAAATTTTTT CTGCTTCATC TTGTTTCTGT TTCTGTTCAT TAACTTCATA 98135 .......... .......... .......... .......... .......... .......... 227 AATACAAGTT ATTGTAAGAA TAACAGGGTG AAATCACATT AGATTCAAGT TTTGTTATAT 98075 .......... .......... .......... .......... .......... .......... 227 TGAGATTGAT AATTAAATAT TAAGTGAAGT GTATTATGTG ATACCATTAA GATTATGTTA 98015 .......... .......... .......... .......... .......... .......... 227 TTTGGAGATA TTGAGACTAC ACCCTAGACT TGAAAATTAG AAAATATGAG AGTTCACATG 97955 .......... .......... .......... .......... .......... .......... 227 TTAACAAAAT AAGGAAATTG ATTCTAAATT TGAGTTTGGG GGTAAGTTAA ACACCTAGTA 97895 .......... .......... .......... .......... .......... .......... 227 TGGGTGTCAT TAATTTTGAA ATCTTATTTC GGTAATTTAA TTGAATAAAT TGCTTTGATT 97835 .......... .......... .......... .......... .......... .......... 227 TGAAAGTTTA ACGAAAAGGG AAAACTCAAG TTCCAAAAGT GAACTCTTGA TCGATTAATG 97775 .......... .......... .......... .......... .......... .......... 227 CAAGTGGATT TCTAAACCCT TGTTAAGTGT ATGAAATTTG TGTATTTCCT TGTGGTATGT 97715 .......... .......... .......... .......... .......... .......... 227 GTTTGGGAGT AATGAGACTT GGTGAAGGAT TGACTTGTCC ACCTTGATTA ATTTTGATGA 97655 .......... .......... .......... .......... .......... .......... 227 TGAAAAGGGG TAATAAAAGA CAATGTGATT AATTGTTTGT GTGTGATGAG TTGAGAAAGG 97595 .......... .......... .......... .......... .......... .......... 227 TACGAGTACC GGTGTTATAA ACGCAAAGTT TATTACTATA GAGTGTGGAT TGTAATTCGA 97535 .......... .......... .......... .......... .......... .......... 227 GAAGGCCAGG GCATATGGAA ATTAACTGAT ATTATATTGA TTTGATTTAT TATGTGTGAT 97475 .......... .......... .......... .......... .......... .......... 227 TGTGTTCTTT AATGAACCCG TATAATTATG ATTATTGAGG CGATTATATG TCATAGTGAC 97415 .......... .......... .......... .......... .......... .......... 227 ATTTTATTTA TTGAGACATC GCATCATCCT CTTTATTTGA TATCATATTG TGTACATGCA 97355 .......... .......... .......... .......... .......... .......... 227 TTGACATGAG ATTGGGTATG AGTAAAGGTC TAACACATGT AGATCGTCCG TGTTAAGATC 97295 .......... .......... .......... .......... .......... .......... 227 GAGTATGATT ATAATTTGGG CACATGGAGA CCGTCCGTGC GAGAAATTGA TTATGATTAT 97235 .......... .......... .......... .......... .......... .......... 227 AAGTTGGGCA CATCGAGATC GTCCATGATT GAGATTGTTA AATTTTATGA TAGTGCATTG 97175 .......... .......... .......... .......... .......... .......... 227 AGATCGTCCG CACAGAAACA TGGAGATCGT CTGTTTCGGT ACATGTACCT CGCGAAGCCC 97115 .......... .......... .......... .......... .......... .......... 227 CCCATAGGTC ATGAACTCTC TATGTATTTT CAAGGAGTAT CATGTATAAA CGGTTGAGAG 97055 .......... .......... .......... .......... .......... .......... 227 AGTACTTGGT ATTTTGAGAC ATATCATTTC ATCGTGTCAT ATTACATTGC ATCTCATGAT 96995 .......... .......... .......... .......... .......... .......... 227 ATCCTTTGGT TACCTTTATT TTATGAACTT GATCTTGTGT GTTGCTGATA TTATTTGTGG 96935 .......... .......... .......... .......... .......... .......... 227 ATGTTGTAAT TGATGAATAT TATTGAGCTT ATTGTTGAGA ATATGTGA-T TGTTAGAATG 96876 || |||||||| |||||| | | || | || .......... .......... ........TT GTTGTTGAGG ATATGTAATT TGCCTAAGTG 259 ATATTGTTGA GATATGTGCT -TGTAAATTG TGCACTGTTA GGTTGAACTT ATTTT-ATGC 96818 | ||||||| | |||||||| ||||||||| || |||||| ||||| | ||||| |||| TTGTTGTTGA GCTATGTGCT ATGTAAATTG TGAGCTGTTA GGTTGGGTTG ATTTTAATGC 319 ACGTTGTTGT TGTGGAGATT CGGTT-GGGG TGTAAGGAGT ACCCGTATTT TATCCTCTTA 96759 | ||||| | ||||||| || ||||| |||| || |||||| |||||||||| |||| |||| AGGTTGTATT TGTGGAGGTT CGGTTGGGGG TGGTAGGAGT ACCCGTATTT CATCCCCTTA 379 GATTGTGTTT AGAGGTTTAC TTGCTGAGTA CCGTGT-GAT TGATACTCAC CCCTTGCTTC 96700 | || ||||| |||||||||| |||||||||| |||||| | | || ||||||| |||||||||| GCTTATGTTT AGAGGTTTAC TTGCTGAGTA CCGTGTGGTT TGGTACTCAC CCCTTGCTTC 439 TACTATTTTG TTTGTAGGTT ATTAGCTTGG ACCTTTGTGA TA-TTTTCTC T-TTACCTTG 96642 ||| | || |||||||||| || ||| ||| | ||||| || || || | | ||| TAC-AAATT- TTTGTAGGTT ATGAGCCTGG ATTTTTGTTG TACTTGTCAG TCTCTTCTTT 497 TATGAGGCTT CTTATGGAGA TTTATGAGGC CGTTGCTTGT CATTTCAGTG GACCTTCTTA 96582 | ||||||| | ||||||| ||| ||||| | || || ||| |||| ||| ||||| TCCGAGGCTT C--ATGGAGA TTTGTGAGGT AGCTG-TTTC CATCTCAGCA GACTTTCTT- 553 CTGC-TATTT ATGATCTTGT TCTACTCTAG AAACAATGTC ATATGAGACT TGTATTTTTC 96523 || | || || |||||||||| |||| ||||| |||||| || || ||||||| || ||||| CTCCATAATT ATGATCTTGT TCTATTCTAG AAACAAGTTC ATTTGAGACT TGAGTTTTTT 613 TTTTGATTAG ATTGCAATAC TTTAGAG 96496 | || | ||| ||||| ||||||| TCTTTTGAAT CTTGTAATAC TTTAGAG 640 hqPGS_C10HBa0111D09.1-_SGN-E541821- (96906 96496) ******************************************************************************** EST sequence 53 -strand 606 n (File: SGN-E262710-) 1 TTTTTTTCTG TCACAATTGG CAGATAAATT AAGTATTTAA AATACTAACA GTAAAGAGCA 61 AATCTTTACA CAACCTGTTT CTGATTTAAC GATAAAGTTT TTATGTTTTT TTAATCGTTA 121 ATCGAATGAT TTTAAAAATT CAAGTAGAGT AGAAAACCAT AAAGGTTTTA ATCTCCAGAA 181 ACCTCAAACA CAGAAACTGT ATAAATTTTC TTAAGATTGT TACTCTTATA ATAACTTTTA 241 TTTATAAAGT TAATAAACAG AAACAGAAAT AAGATGAAGC AGAAAATAAT ATAGAATACA 301 AGAATTAATC CGAGTCCACA GAAACTACTA TGTGTCCTTA AGAAATTTAA TTCCCTCACT 361 GTACCCAAGG TTATGGATTA ATTTCTCTCA AGATAAAACG GATTAAACCT GTTAAAGAAA 421 TAGCGGTACC TCAAACTTCT TTAACTTCAA CGAACTTAAG AACAACAACA AGTCACACAG 481 ACTCAGTCGA TCGACACTTT GATTTTATTT GAGAGAAAAA TAAATGCAGA GAAAGAAAAA 541 TTTTCAGTGT TTAAAAAATC AAAATTTGAC TTCCTTTTAT AGCCATTTTC AGCAAGGAAC 601 ATGTCC Predicted gene structure (within gDNA segment 94253 to 99106): Exon 1 95088 95127 ( 40 n); cDNA 79 119 ( 41 n); score: 0.575 Intron 1 95128 95906 ( 779 n); Pd: 0.900 (s: 0.57), Pa: 0.651 (s: 0) Exon 2 95907 95918 ( 12 n); cDNA 120 132 ( 13 n); score: 0.625 Intron 2 95919 96216 ( 298 n); Pd: 0.000 (s: 0), Pa: 0.048 (s: 0) Exon 3 96217 96250 ( 34 n); cDNA 133 164 ( 32 n); score: 0.647 Intron 3 96251 97991 (1741 n); Pd: 0.000 (s: 0), Pa: 0.118 (s: 0) Exon 4 97992 98030 ( 39 n); cDNA 165 203 ( 39 n); score: 0.564 Intron 4 98031 98094 ( 64 n); Pd: 0.947 (s: 0), Pa: 0.000 (s: 0.76) Exon 5 98095 98496 ( 402 n); cDNA 204 605 ( 402 n); score: 0.915 MATCH C10HBa0111D09.1+ SGN-E262710- 0.915 527 0.870 C PGS_C10HBa0111D09.1+_SGN-E262710- (95088 95127,95907 95918,96217 96250,97992 98030,98095 98496) Alignment (genomic DNA sequence = upper lines): TTATGAATTT TCCGA-AGGG TTGCAAT-TT TTTCAAATAG TTGTAACCTT TCTGTTAAGA 95145 || || |||| ||| | | || || || ||| ||| | || TTCTG-ATTT AACGATAAAG TTTTTATGTT TTTTTAATCG TT........ .......... 119 CACAATAAAC ATTTGTTCAC ACTAACCTTT GTTGTCTATA AATAGAAGGA TTTTCTCTCA 95205 .......... .......... .......... .......... .......... .......... 119 TTTTAAAACA ACTAATTTTA ATCTCTTCTA TTTCCGCAAA ATTAAATATT TTTGTACTTT 95265 .......... .......... .......... .......... .......... .......... 119 GCTCCTTTCG AGTGACTTAC TAACACCACT ATTTTTTATC AATAAGTTGG TGAAAAAATC 95325 .......... .......... .......... .......... .......... .......... 119 TTTCATCGTG AGAGGATGTA ATTCATTAAA TCTCTTGTAT TGGAGGGAAG TAGTTTTTTA 95385 .......... .......... .......... .......... .......... .......... 119 AAGGGGATAT TGTGTATTCA GTGAACTCGA TTTTTTCCTT TATATTTCAT TCTATTCATA 95445 .......... .......... .......... .......... .......... .......... 119 CATATCCTGA TATGTTTTTT ACACTCATTA ATTTATGTTT ATGATATTAA TTGTTGTTTT 95505 .......... .......... .......... .......... .......... .......... 119 TGAGTACATG TTTTAAACTT GGTTTTTTAT ATTTCTGCAA AGTTATTTTC TCTGGTTATA 95565 .......... .......... .......... .......... .......... .......... 119 GATAGAAAAT ATATACATGT AGTAGGTATA TTTATTGTAC GGAAAATAAT TATTGTAAAA 95625 .......... .......... .......... .......... .......... .......... 119 GTGCTATGTA TAAGCTTACA TATTATATTT TCTTACGTAA ATATGAAATT TCTCACTTAT 95685 .......... .......... .......... .......... .......... .......... 119 CAATTGAAGA AATTCATTAT ACAAGTTCAA AAGTTATAAT TGCTTTCATG TGCAAGCGTA 95745 .......... .......... .......... .......... .......... .......... 119 ATTTCTTTTT TGAAAATGTT AACAAATTTT TGGATTTTCT TCTTATCCAT ATATCACAAT 95805 .......... .......... .......... .......... .......... .......... 119 TGTATAATTT TTGTAATTTA AATGTTTCTT TTTTATTACG AAACACCTTT GTATATATAT 95865 .......... .......... .......... .......... .......... .......... 119 TCATATGTTC TTCTTTATTT TTCTTTCAAT GTTGATTGAA GAACC-AATG ATTGATTATA 95924 || | |||| ||| .......... .......... .......... .......... .AATCGAATG ATTT...... 132 TCGTGAATAA GTCATTCATT AGAGGTTCTT GACTTATGTG ATATTGATAA AATAATCAAA 95984 .......... .......... .......... .......... .......... .......... 132 TTCATATTGG AGTATTGCCA ATATTTTTTA AGAACCTATT TTCTATTATT TTTAATGTAT 96044 .......... .......... .......... .......... .......... .......... 132 CGATATTAGT AAAAATTATT TGCAAGTTCA ATGCAATTAT TATTTAGGAC TGGGTAAAGC 96104 .......... .......... .......... .......... .......... .......... 132 TCAAAAAATT TACCTAGTGT GTATATATAT ATATATATAT ATATATATAT ATATGAAAAG 96164 .......... .......... .......... .......... .......... .......... 132 AAATAGAAGA AGAAATATCT ATACAACTAA TTATAAAATA TAATATAAGA AGTAGAAAGA 96224 || ||| .......... .......... .......... .......... .......... ..TAAAAATT 140 AAAGGATCAG AAGAAGAACA AGAAACGTAC AACACTAAAA CCCTAACAGA GCTCCAAATA 96284 ||| | || |||| ||| | ||| CAAGTA-GAG TAGAA-AACC ATAAAG.... .......... .......... .......... 164 TTGCAAAATA GAACAAAATA ACTGAACAAC TCTTCTTCAA TCCCCTAAAA AAAGGATGCA 96344 .......... .......... .......... .......... .......... .......... 164 CTACTTCACA TCTCTTCATC ATGCTCCCAT GGTGTCACGA TCCAAAATAG ATGTGATGAC 96404 .......... .......... .......... .......... .......... .......... 164 ACTCGTCTTA TCTTATCAAG ACAAGTCAGC CTAACATCCT ACTAATATAA TGAATGTGGA 96464 .......... .......... .......... .......... .......... .......... 164 AGTAAAACGA CAGTAAAAGT CTAATACTAG CCTCTAAAGT ATTGCAATCT AATCAAAAGA 96524 .......... .......... .......... .......... .......... .......... 164 AAAATACAAG TCTCATATGA CATTGTTTCT AGAGTAGAAC AAGATCATAA ATAGCAGTAA 96584 .......... .......... .......... .......... .......... .......... 164 GAAGGTCCAC TGAAATGACA AGCAACGGCC TCATAAATCT CCATAAGAAG CCTCATACAA 96644 .......... .......... .......... .......... .......... .......... 164 GGTAAAGAGA AAATATCACA AAGGTCCAAG CTAATAACCT ACAAACAAAA TAGTAGAAGC 96704 .......... .......... .......... .......... .......... .......... 164 AAGGGGTGAG TATCAATCAC ACGGTACTCA GCAAGTAAAC CTCTAAACAC AATCTAAGAG 96764 .......... .......... .......... .......... .......... .......... 164 GATAAAATAC GGGTACTCCT TACACCCCAA CCGAATCTCC ACAACAACAA CGTGCATAAA 96824 .......... .......... .......... .......... .......... .......... 164 ATAAGTTCAA CCTAACAGTG CACAATTTAC AAGCACATAT CTCAACAATA TCATTCTAAC 96884 .......... .......... .......... .......... .......... .......... 164 AATCACATAT TCTCAACAAT AAGCTCAATA ATATTCATCA ATTACAACAT CCACAAATAA 96944 .......... .......... .......... .......... .......... .......... 164 TATCAGCAAC ACACAAGATC AAGTTCATAA AATAAAGGTA ACCAAAGGAT ATCATGAGAT 97004 .......... .......... .......... .......... .......... .......... 164 GCAATGTAAT ATGACACGAT GAAATGATAT GTCTCAAAAT ACCAAGTACT CTCTCAACCG 97064 .......... .......... .......... .......... .......... .......... 164 TTTATACATG ATACTCCTTG AAAATACATA GAGAGTTCAT GACCTATGGG GGGCTTCGCG 97124 .......... .......... .......... .......... .......... .......... 164 AGGTACATGT ACCGAAACAG ACGATCTCCA TGTTTCTGTG CGGACGATCT CAATGCACTA 97184 .......... .......... .......... .......... .......... .......... 164 TCATAAAATT TAACAATCTC AATCATGGAC GATCTCGATG TGCCCAACTT ATAATCATAA 97244 .......... .......... .......... .......... .......... .......... 164 TCAATTTCTC GCACGGACGG TCTCCATGTG CCCAAATTAT AATCATACTC GATCTTAACA 97304 .......... .......... .......... .......... .......... .......... 164 CGGACGATCT ACATGTGTTA GACCTTTACT CATACCCAAT CTCATGTCAA TGCATGTACA 97364 .......... .......... .......... .......... .......... .......... 164 CAATATGATA TCAAATAAAG AGGATGATGC GATGTCTCAA TAAATAAAAT GTCACTATGA 97424 .......... .......... .......... .......... .......... .......... 164 CATATAATCG CCTCAATAAT CATAATTATA CGGGTTCATT AAAGAACACA ATCACACATA 97484 .......... .......... .......... .......... .......... .......... 164 ATAAATCAAA TCAATATAAT ATCAGTTAAT TTCCATATGC CCTGGCCTTC TCGAATTACA 97544 .......... .......... .......... .......... .......... .......... 164 ATCCACACTC TATAGTAATA AACTTTGCGT TTATAACACC GGTACTCGTA CCTTTCTCAA 97604 .......... .......... .......... .......... .......... .......... 164 CTCATCACAC ACAAACAATT AATCACATTG TCTTTTATTA CCCCTTTTCA TCATCAAAAT 97664 .......... .......... .......... .......... .......... .......... 164 TAATCAAGGT GGACAAGTCA ATCCTTCACC AAGTCTCATT ACTCCCAAAC ACATACCACA 97724 .......... .......... .......... .......... .......... .......... 164 AGGAAATACA CAAATTTCAT ACACTTAACA AGGGTTTAGA AATCCACTTG CATTAATCGA 97784 .......... .......... .......... .......... .......... .......... 164 TCAAGAGTTC ACTTTTGGAA CTTGAGTTTT CCCTTTTCGT TAAACTTTCA AATCAAAGCA 97844 .......... .......... .......... .......... .......... .......... 164 ATTTATTCAA TTAAATTACC GAAATAAGAT TTCAAAATTA ATGACACCCA TACTAGGTGT 97904 .......... .......... .......... .......... .......... .......... 164 TTAACTTACC CCCAAACTCA AATTTAGAAT CAATTTCCTT ATTTTGTTAA CATGTGAACT 97964 .......... .......... .......... .......... .......... .......... 164 CTCATATTTT CTAATTTTCA AGTCTAGGGT GTAGTCTCAA TATCTCCAAA TAACATAATC 98024 | | || |||| | | | || ||| || | .......... .......... .......GTT TTAATCTCCA GAAACCTCAA ACACAGAAAC 197 TTAATGGTAT CACATAATAC ACTTCACTTA ATATTTAATT ATCAATCTCA ATATAACAAA 98084 | || TGTATA.... .......... .......... .......... .......... .......... 203 ACTTGAATCT AATGTGATTT CACCCTGTTA TTCTTACAAT AACTTGTATT TATGAAGTTA 98144 ||| | || | ||||| ||||| ||| ||||| |||| ||| |||||| .......... AAT-TTTCTT AAGATTGTTA CTCTTATAAT AACTTTTATT TATAAAGTTA 252 ATGAACAGAA ACAGAAACAA GATGAAGCAG AAAA-AATTT AAAATAGAGG AATTAATCCG 98203 || ||||||| ||||||| || |||||||||| |||| ||| | | |||| | | |||||||||| ATAAACAGAA ACAGAAATAA GATGAAGCAG AAAATAATAT AGAATACAAG AATTAATCCG 312 AGTCCACTGA AACTACTGTG TGTCCTTAAG AAATTTAATC CCCTCACTGT ACCCAAGGTT 98263 ||||||| || ||||||| || |||||||||| ||||||||| |||||||||| |||||||||| AGTCCACAGA AACTACTATG TGTCCTTAAG AAATTTAATT CCCTCACTGT ACCCAAGGTT 372 ATGGATTAAT TTCTCCCAAG ATAAAACGGA TTACACCTGT TAAAGAAATA GCGGTACCTC 98323 |||||||||| ||||| |||| |||||||||| ||| |||||| |||||||||| |||||||||| ATGGATTAAT TTCTCTCAAG ATAAAACGGA TTAAACCTGT TAAAGAAATA GCGGTACCTC 432 AAACTTCTTT AACTTCAACG AACTGAA-AA CAGCAACAAG TCACACAGAC TCAGTCGATC 98382 |||||||||| |||||||||| |||| || || || ||||||| |||||||||| |||||||||| AAACTTCTTT AACTTCAACG AACTTAAGAA CAACAACAAG TCACACAGAC TCAGTCGATC 492 GACACTTTGA TTTTATTTGA GAGAAAAATA AATGCAGAGA AAGAAAAAAT CTTCAGTGAT 98442 |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| ||||||| | GACACTTTGA TTTTATTTGA GAGAAAAATA AATGCAGAGA AAG-AAAAAT TTTCAGTGTT 551 TAAAAAATCA AAAATTGACT TCCTTTTATA GCCATTTTCA GCAAGGAACA TGTC 98496 |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| |||| TAAAAAATCA AAATTTGACT TCCTTTTATA GCCATTTTCA GCAAGGAACA TGTC 605 hqPGS_C10HBa0111D09.1+_SGN-E262710- (97992 98030,98095 98496) ******************************************************************************** EST sequence 116 -strand 577 n (File: SGN-E369760-) 1 TAAGTATTTA AAATACTAAC AGTAAAGAGC AAATCTTTAC ACAACCTGTT TCTGATTTAA 61 CGATAAAGTT TTTATGTTTT TTTAATCGTT AATCGAATGA TTTTAAAAAT TCAAGTAGAG 121 TAGAAAACCA TAAAGGTTTT AATCTCCAGA AACCTCAAAC ACAGAAACTG TATAAATTTT 181 CTTAAGATTG TTACTCTTAT AATAACTTTT ATTTATAAAG TTAATAAACA GAAACAGAAA 241 TAAGATGAAG CAGAAAATAA TATAGAATAC AAGAATTAAT CCGAGTCCAC AGAAACTACT 301 ATGTGTCCTT AAGAAATTTA ATTCCCTCAC TGTACCCAAG GTTATGGATT AATTTCTCTC 361 AAGATAAAAC GGATTAAACC TGTTAAAGAA ATAGCGGTAC CTCAAACTTC TTTAACTTCA 421 ACGAACTTAA GAACAACAAC AAGTCACACA GACTCAGTCG ATCGACACTT TGATTTTATT 481 TGAGAGAAAA ATAAATGCAG AGAAAGAAAA ATTTTCAGTG TTTAAAAAAT CAAAATTTGA 541 CTTCCTTTTA TAGCCATTTT CAGCAAGGAA CATGTCC Predicted gene structure (within gDNA segment 95143 to 99106): Exon 1 95911 95918 ( 8 n); cDNA 96 103 ( 8 n); score: 0.875 Intron 1 95919 96216 ( 298 n); Pd: 0.000 (s: 0), Pa: 0.048 (s: 0) Exon 2 96217 96250 ( 34 n); cDNA 104 135 ( 32 n); score: 0.647 Intron 2 96251 97991 (1741 n); Pd: 0.000 (s: 0), Pa: 0.118 (s: 0) Exon 3 97992 98030 ( 39 n); cDNA 136 174 ( 39 n); score: 0.564 Intron 3 98031 98094 ( 64 n); Pd: 0.947 (s: 0), Pa: 0.000 (s: 0.76) Exon 4 98095 98496 ( 402 n); cDNA 175 576 ( 402 n); score: 0.915 MATCH C10HBa0111D09.1+ SGN-E369760- 0.915 483 0.837 C PGS_C10HBa0111D09.1+_SGN-E369760- (95911 95918,96217 96250,97992 98030,98095 98496) Alignment (genomic DNA sequence = upper lines): AATGATTGAT TATATCGTGA ATAAGTCATT CATTAGAGGT TCTTGACTTA TGTGATATTG 95970 ||||||| AATGATTT.. .......... .......... .......... .......... .......... 103 ATAAAATAAT CAAATTCATA TTGGAGTATT GCCAATATTT TTTAAGAACC TATTTTCTAT 96030 .......... .......... .......... .......... .......... .......... 103 TATTTTTAAT GTATCGATAT TAGTAAAAAT TATTTGCAAG TTCAATGCAA TTATTATTTA 96090 .......... .......... .......... .......... .......... .......... 103 GGACTGGGTA AAGCTCAAAA AATTTACCTA GTGTGTATAT ATATATATAT ATATATATAT 96150 .......... .......... .......... .......... .......... .......... 103 ATATATATGA AAAGAAATAG AAGAAGAAAT ATCTATACAA CTAATTATAA AATATAATAT 96210 .......... .......... .......... .......... .......... .......... 103 AAGAAGTAGA AAGAAAAGGA TCAGAAGAAG AACAAGAAAC GTACAACACT AAAACCCTAA 96270 || | || ||| | || |||| ||| | ||| ......TAAA AATTCAAGTA G-AGTAGAA- AACCATAAAG .......... .......... 135 CAGAGCTCCA AATATTGCAA AATAGAACAA AATAACTGAA CAACTCTTCT TCAATCCCCT 96330 .......... .......... .......... .......... .......... .......... 135 AAAAAAAGGA TGCACTACTT CACATCTCTT CATCATGCTC CCATGGTGTC ACGATCCAAA 96390 .......... .......... .......... .......... .......... .......... 135 ATAGATGTGA TGACACTCGT CTTATCTTAT CAAGACAAGT CAGCCTAACA TCCTACTAAT 96450 .......... .......... .......... .......... .......... .......... 135 ATAATGAATG TGGAAGTAAA ACGACAGTAA AAGTCTAATA CTAGCCTCTA AAGTATTGCA 96510 .......... .......... .......... .......... .......... .......... 135 ATCTAATCAA AAGAAAAATA CAAGTCTCAT ATGACATTGT TTCTAGAGTA GAACAAGATC 96570 .......... .......... .......... .......... .......... .......... 135 ATAAATAGCA GTAAGAAGGT CCACTGAAAT GACAAGCAAC GGCCTCATAA ATCTCCATAA 96630 .......... .......... .......... .......... .......... .......... 135 GAAGCCTCAT ACAAGGTAAA GAGAAAATAT CACAAAGGTC CAAGCTAATA ACCTACAAAC 96690 .......... .......... .......... .......... .......... .......... 135 AAAATAGTAG AAGCAAGGGG TGAGTATCAA TCACACGGTA CTCAGCAAGT AAACCTCTAA 96750 .......... .......... .......... .......... .......... .......... 135 ACACAATCTA AGAGGATAAA ATACGGGTAC TCCTTACACC CCAACCGAAT CTCCACAACA 96810 .......... .......... .......... .......... .......... .......... 135 ACAACGTGCA TAAAATAAGT TCAACCTAAC AGTGCACAAT TTACAAGCAC ATATCTCAAC 96870 .......... .......... .......... .......... .......... .......... 135 AATATCATTC TAACAATCAC ATATTCTCAA CAATAAGCTC AATAATATTC ATCAATTACA 96930 .......... .......... .......... .......... .......... .......... 135 ACATCCACAA ATAATATCAG CAACACACAA GATCAAGTTC ATAAAATAAA GGTAACCAAA 96990 .......... .......... .......... .......... .......... .......... 135 GGATATCATG AGATGCAATG TAATATGACA CGATGAAATG ATATGTCTCA AAATACCAAG 97050 .......... .......... .......... .......... .......... .......... 135 TACTCTCTCA ACCGTTTATA CATGATACTC CTTGAAAATA CATAGAGAGT TCATGACCTA 97110 .......... .......... .......... .......... .......... .......... 135 TGGGGGGCTT CGCGAGGTAC ATGTACCGAA ACAGACGATC TCCATGTTTC TGTGCGGACG 97170 .......... .......... .......... .......... .......... .......... 135 ATCTCAATGC ACTATCATAA AATTTAACAA TCTCAATCAT GGACGATCTC GATGTGCCCA 97230 .......... .......... .......... .......... .......... .......... 135 ACTTATAATC ATAATCAATT TCTCGCACGG ACGGTCTCCA TGTGCCCAAA TTATAATCAT 97290 .......... .......... .......... .......... .......... .......... 135 ACTCGATCTT AACACGGACG ATCTACATGT GTTAGACCTT TACTCATACC CAATCTCATG 97350 .......... .......... .......... .......... .......... .......... 135 TCAATGCATG TACACAATAT GATATCAAAT AAAGAGGATG ATGCGATGTC TCAATAAATA 97410 .......... .......... .......... .......... .......... .......... 135 AAATGTCACT ATGACATATA ATCGCCTCAA TAATCATAAT TATACGGGTT CATTAAAGAA 97470 .......... .......... .......... .......... .......... .......... 135 CACAATCACA CATAATAAAT CAAATCAATA TAATATCAGT TAATTTCCAT ATGCCCTGGC 97530 .......... .......... .......... .......... .......... .......... 135 CTTCTCGAAT TACAATCCAC ACTCTATAGT AATAAACTTT GCGTTTATAA CACCGGTACT 97590 .......... .......... .......... .......... .......... .......... 135 CGTACCTTTC TCAACTCATC ACACACAAAC AATTAATCAC ATTGTCTTTT ATTACCCCTT 97650 .......... .......... .......... .......... .......... .......... 135 TTCATCATCA AAATTAATCA AGGTGGACAA GTCAATCCTT CACCAAGTCT CATTACTCCC 97710 .......... .......... .......... .......... .......... .......... 135 AAACACATAC CACAAGGAAA TACACAAATT TCATACACTT AACAAGGGTT TAGAAATCCA 97770 .......... .......... .......... .......... .......... .......... 135 CTTGCATTAA TCGATCAAGA GTTCACTTTT GGAACTTGAG TTTTCCCTTT TCGTTAAACT 97830 .......... .......... .......... .......... .......... .......... 135 TTCAAATCAA AGCAATTTAT TCAATTAAAT TACCGAAATA AGATTTCAAA ATTAATGACA 97890 .......... .......... .......... .......... .......... .......... 135 CCCATACTAG GTGTTTAACT TACCCCCAAA CTCAAATTTA GAATCAATTT CCTTATTTTG 97950 .......... .......... .......... .......... .......... .......... 135 TTAACATGTG AACTCTCATA TTTTCTAATT TTCAAGTCTA GGGTGTAGTC TCAATATCTC 98010 | | || || || | | | .......... .......... .......... .......... .GTTTTAATC TCCAGAAACC 154 CAAATAACAT AATCTTAATG GTATCACATA ATACACTTCA CTTAATATTT AATTATCAAT 98070 || ||| || || || TCAAACACAG AAACTGTATA .......... .......... .......... .......... 174 CTCAATATAA CAAAACTTGA ATCTAATGTG ATTTCACCCT GTTATTCTTA CAATAACTTG 98130 ||| | || | | |||| ||||| |||||||| .......... .......... ....AAT-TT TCTTAAGATT GTTACTCTTA TAATAACTTT 209 TATTTATGAA GTTAATGAAC AGAAACAGAA ACAAGATGAA GCAGAAAA-A ATTTAAAATA 98189 ||||||| || |||||| ||| |||||||||| | |||||||| |||||||| | || || |||| TATTTATAAA GTTAATAAAC AGAAACAGAA ATAAGATGAA GCAGAAAATA ATATAGAATA 269 GAGGAATTAA TCCGAGTCCA CTGAAACTAC TGTGTGTCCT TAAGAAATTT AATCCCCTCA 98249 | ||||||| |||||||||| | |||||||| | |||||||| |||||||||| ||| |||||| CAAGAATTAA TCCGAGTCCA CAGAAACTAC TATGTGTCCT TAAGAAATTT AATTCCCTCA 329 CTGTACCCAA GGTTATGGAT TAATTTCTCC CAAGATAAAA CGGATTACAC CTGTTAAAGA 98309 |||||||||| |||||||||| ||||||||| |||||||||| ||||||| || |||||||||| CTGTACCCAA GGTTATGGAT TAATTTCTCT CAAGATAAAA CGGATTAAAC CTGTTAAAGA 389 AATAGCGGTA CCTCAAACTT CTTTAACTTC AACGAACTGA A-AACAGCAA CAAGTCACAC 98368 |||||||||| |||||||||| |||||||||| |||||||| | | |||| ||| |||||||||| AATAGCGGTA CCTCAAACTT CTTTAACTTC AACGAACTTA AGAACAACAA CAAGTCACAC 449 AGACTCAGTC GATCGACACT TTGATTTTAT TTGAGAGAAA AATAAATGCA GAGAAAGAAA 98428 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || AGACTCAGTC GATCGACACT TTGATTTTAT TTGAGAGAAA AATAAATGCA GAGAAAG-AA 508 AAATCTTCAG TGATTAAAAA ATCAAAAATT GACTTCCTTT TATAGCCATT TTCAGCAAGG 98488 |||| ||||| || ||||||| ||||||| || |||||||||| |||||||||| |||||||||| AAATTTTCAG TGTTTAAAAA ATCAAAATTT GACTTCCTTT TATAGCCATT TTCAGCAAGG 568 AACATGTC 98496 |||||||| AACATGTC 576 hqPGS_C10HBa0111D09.1+_SGN-E369760- (97992 98030,98095 98496) ******************************************************************************** EST sequence 78 -strand 591 n (File: SGN-E254845-) 1 GACTTGAATT AGTCTTTTTT TTCTGTCACA ATTGGCAGAT AAATTAAGTA TTTAAAATAC 61 TAACAGTAAA GAGCAATTCT TTACACAACC TGTTTCTGAT TTAACGATAA AGTTTTTATG 121 TTTTTTTAAT CGTTAATCGA ATGATTTTAA AAATTCAAGT AGAGTAGAAA ACCATAAAGG 181 TTTTATTCTC CAGAAACCTC AAACACAGAA ACTGTATAAA TTTTCTTAAG ATTGTTACTC 241 TTATAATAAC TTTTATTTAT AAAGTTAATA AACAGAAACA GAAATAAGAT GAAGCAGAAA 301 ATAATATAGA ATACAAGAAT TAATCCGAGT CCACAGAAAC TACTATGTGT CCTTAAGAAA 361 TTTAATTCCC TCACTGGTAC CCAAGGTTAT GGATTAATTT CTCTCAAGAT AAAACGGATT 421 AAACCTGTTA AAGAAATAGC GGTACCTCAA ACTTCTTTAA CTTCAACGAA CTTAAGAACA 481 ACAACAAGTC ACACAGACTC AGTCGATCGA CACTTTGATT TTATTTGAGA GAAAAATAAA 541 TGCACCGAAA GCCAAATTTT CAGTGTTTAA AAAATCAAAA TTTGACTTCC T Predicted gene structure (within gDNA segment 94103 to 99488): Exon 1 95088 95127 ( 40 n); cDNA 94 134 ( 41 n); score: 0.575 Intron 1 95128 95906 ( 779 n); Pd: 0.900 (s: 0.57), Pa: 0.651 (s: 0) Exon 2 95907 95918 ( 12 n); cDNA 135 147 ( 13 n); score: 0.625 Intron 2 95919 96216 ( 298 n); Pd: 0.000 (s: 0), Pa: 0.048 (s: 0) Exon 3 96217 96250 ( 34 n); cDNA 148 179 ( 32 n); score: 0.647 Intron 3 96251 97991 (1741 n); Pd: 0.000 (s: 0), Pa: 0.118 (s: 0) Exon 4 97992 98030 ( 39 n); cDNA 180 218 ( 39 n); score: 0.564 Intron 4 98031 98094 ( 64 n); Pd: 0.947 (s: 0), Pa: 0.000 (s: 0.76) Exon 5 98095 98466 ( 372 n); cDNA 219 591 ( 373 n); score: 0.891 MATCH C10HBa0111D09.1+ SGN-E254845- 0.891 497 0.841 C PGS_C10HBa0111D09.1+_SGN-E254845- (95088 95127,95907 95918,96217 96250,97992 98030,98095 98466) Alignment (genomic DNA sequence = upper lines): TTATGAATTT TCCGA-AGGG TTGCAAT-TT TTTCAAATAG TTGTAACCTT TCTGTTAAGA 95145 || ||| ||| ||| | | || || || ||| ||| | || TTCTGA-TTT AACGATAAAG TTTTTATGTT TTTTTAATCG TT........ .......... 134 CACAATAAAC ATTTGTTCAC ACTAACCTTT GTTGTCTATA AATAGAAGGA TTTTCTCTCA 95205 .......... .......... .......... .......... .......... .......... 134 TTTTAAAACA ACTAATTTTA ATCTCTTCTA TTTCCGCAAA ATTAAATATT TTTGTACTTT 95265 .......... .......... .......... .......... .......... .......... 134 GCTCCTTTCG AGTGACTTAC TAACACCACT ATTTTTTATC AATAAGTTGG TGAAAAAATC 95325 .......... .......... .......... .......... .......... .......... 134 TTTCATCGTG AGAGGATGTA ATTCATTAAA TCTCTTGTAT TGGAGGGAAG TAGTTTTTTA 95385 .......... .......... .......... .......... .......... .......... 134 AAGGGGATAT TGTGTATTCA GTGAACTCGA TTTTTTCCTT TATATTTCAT TCTATTCATA 95445 .......... .......... .......... .......... .......... .......... 134 CATATCCTGA TATGTTTTTT ACACTCATTA ATTTATGTTT ATGATATTAA TTGTTGTTTT 95505 .......... .......... .......... .......... .......... .......... 134 TGAGTACATG TTTTAAACTT GGTTTTTTAT ATTTCTGCAA AGTTATTTTC TCTGGTTATA 95565 .......... .......... .......... .......... .......... .......... 134 GATAGAAAAT ATATACATGT AGTAGGTATA TTTATTGTAC GGAAAATAAT TATTGTAAAA 95625 .......... .......... .......... .......... .......... .......... 134 GTGCTATGTA TAAGCTTACA TATTATATTT TCTTACGTAA ATATGAAATT TCTCACTTAT 95685 .......... .......... .......... .......... .......... .......... 134 CAATTGAAGA AATTCATTAT ACAAGTTCAA AAGTTATAAT TGCTTTCATG TGCAAGCGTA 95745 .......... .......... .......... .......... .......... .......... 134 ATTTCTTTTT TGAAAATGTT AACAAATTTT TGGATTTTCT TCTTATCCAT ATATCACAAT 95805 .......... .......... .......... .......... .......... .......... 134 TGTATAATTT TTGTAATTTA AATGTTTCTT TTTTATTACG AAACACCTTT GTATATATAT 95865 .......... .......... .......... .......... .......... .......... 134 TCATATGTTC TTCTTTATTT TTCTTTCAAT GTTGATTGAA GAA-CCAATG ATTGATTATA 95924 || | |||| ||| .......... .......... .......... .......... .AATCGAATG ATTT...... 147 TCGTGAATAA GTCATTCATT AGAGGTTCTT GACTTATGTG ATATTGATAA AATAATCAAA 95984 .......... .......... .......... .......... .......... .......... 147 TTCATATTGG AGTATTGCCA ATATTTTTTA AGAACCTATT TTCTATTATT TTTAATGTAT 96044 .......... .......... .......... .......... .......... .......... 147 CGATATTAGT AAAAATTATT TGCAAGTTCA ATGCAATTAT TATTTAGGAC TGGGTAAAGC 96104 .......... .......... .......... .......... .......... .......... 147 TCAAAAAATT TACCTAGTGT GTATATATAT ATATATATAT ATATATATAT ATATGAAAAG 96164 .......... .......... .......... .......... .......... .......... 147 AAATAGAAGA AGAAATATCT ATACAACTAA TTATAAAATA TAATATAAGA AGTAGAAAGA 96224 || ||| .......... .......... .......... .......... .......... ..TAAAAATT 155 AAAGGATCAG AAGAAGAACA AGAAACGTAC AACACTAAAA CCCTAACAGA GCTCCAAATA 96284 ||| | || |||| ||| | ||| CAAGTA-GAG TAGAA-AACC ATAAAG.... .......... .......... .......... 179 TTGCAAAATA GAACAAAATA ACTGAACAAC TCTTCTTCAA TCCCCTAAAA AAAGGATGCA 96344 .......... .......... .......... .......... .......... .......... 179 CTACTTCACA TCTCTTCATC ATGCTCCCAT GGTGTCACGA TCCAAAATAG ATGTGATGAC 96404 .......... .......... .......... .......... .......... .......... 179 ACTCGTCTTA TCTTATCAAG ACAAGTCAGC CTAACATCCT ACTAATATAA TGAATGTGGA 96464 .......... .......... .......... .......... .......... .......... 179 AGTAAAACGA CAGTAAAAGT CTAATACTAG CCTCTAAAGT ATTGCAATCT AATCAAAAGA 96524 .......... .......... .......... .......... .......... .......... 179 AAAATACAAG TCTCATATGA CATTGTTTCT AGAGTAGAAC AAGATCATAA ATAGCAGTAA 96584 .......... .......... .......... .......... .......... .......... 179 GAAGGTCCAC TGAAATGACA AGCAACGGCC TCATAAATCT CCATAAGAAG CCTCATACAA 96644 .......... .......... .......... .......... .......... .......... 179 GGTAAAGAGA AAATATCACA AAGGTCCAAG CTAATAACCT ACAAACAAAA TAGTAGAAGC 96704 .......... .......... .......... .......... .......... .......... 179 AAGGGGTGAG TATCAATCAC ACGGTACTCA GCAAGTAAAC CTCTAAACAC AATCTAAGAG 96764 .......... .......... .......... .......... .......... .......... 179 GATAAAATAC GGGTACTCCT TACACCCCAA CCGAATCTCC ACAACAACAA CGTGCATAAA 96824 .......... .......... .......... .......... .......... .......... 179 ATAAGTTCAA CCTAACAGTG CACAATTTAC AAGCACATAT CTCAACAATA TCATTCTAAC 96884 .......... .......... .......... .......... .......... .......... 179 AATCACATAT TCTCAACAAT AAGCTCAATA ATATTCATCA ATTACAACAT CCACAAATAA 96944 .......... .......... .......... .......... .......... .......... 179 TATCAGCAAC ACACAAGATC AAGTTCATAA AATAAAGGTA ACCAAAGGAT ATCATGAGAT 97004 .......... .......... .......... .......... .......... .......... 179 GCAATGTAAT ATGACACGAT GAAATGATAT GTCTCAAAAT ACCAAGTACT CTCTCAACCG 97064 .......... .......... .......... .......... .......... .......... 179 TTTATACATG ATACTCCTTG AAAATACATA GAGAGTTCAT GACCTATGGG GGGCTTCGCG 97124 .......... .......... .......... .......... .......... .......... 179 AGGTACATGT ACCGAAACAG ACGATCTCCA TGTTTCTGTG CGGACGATCT CAATGCACTA 97184 .......... .......... .......... .......... .......... .......... 179 TCATAAAATT TAACAATCTC AATCATGGAC GATCTCGATG TGCCCAACTT ATAATCATAA 97244 .......... .......... .......... .......... .......... .......... 179 TCAATTTCTC GCACGGACGG TCTCCATGTG CCCAAATTAT AATCATACTC GATCTTAACA 97304 .......... .......... .......... .......... .......... .......... 179 CGGACGATCT ACATGTGTTA GACCTTTACT CATACCCAAT CTCATGTCAA TGCATGTACA 97364 .......... .......... .......... .......... .......... .......... 179 CAATATGATA TCAAATAAAG AGGATGATGC GATGTCTCAA TAAATAAAAT GTCACTATGA 97424 .......... .......... .......... .......... .......... .......... 179 CATATAATCG CCTCAATAAT CATAATTATA CGGGTTCATT AAAGAACACA ATCACACATA 97484 .......... .......... .......... .......... .......... .......... 179 ATAAATCAAA TCAATATAAT ATCAGTTAAT TTCCATATGC CCTGGCCTTC TCGAATTACA 97544 .......... .......... .......... .......... .......... .......... 179 ATCCACACTC TATAGTAATA AACTTTGCGT TTATAACACC GGTACTCGTA CCTTTCTCAA 97604 .......... .......... .......... .......... .......... .......... 179 CTCATCACAC ACAAACAATT AATCACATTG TCTTTTATTA CCCCTTTTCA TCATCAAAAT 97664 .......... .......... .......... .......... .......... .......... 179 TAATCAAGGT GGACAAGTCA ATCCTTCACC AAGTCTCATT ACTCCCAAAC ACATACCACA 97724 .......... .......... .......... .......... .......... .......... 179 AGGAAATACA CAAATTTCAT ACACTTAACA AGGGTTTAGA AATCCACTTG CATTAATCGA 97784 .......... .......... .......... .......... .......... .......... 179 TCAAGAGTTC ACTTTTGGAA CTTGAGTTTT CCCTTTTCGT TAAACTTTCA AATCAAAGCA 97844 .......... .......... .......... .......... .......... .......... 179 ATTTATTCAA TTAAATTACC GAAATAAGAT TTCAAAATTA ATGACACCCA TACTAGGTGT 97904 .......... .......... .......... .......... .......... .......... 179 TTAACTTACC CCCAAACTCA AATTTAGAAT CAATTTCCTT ATTTTGTTAA CATGTGAACT 97964 .......... .......... .......... .......... .......... .......... 179 CTCATATTTT CTAATTTTCA AGTCTAGGGT GTAGTCTCAA TATCTCCAAA TAACATAATC 98024 | | || |||| | | | || ||| || | .......... .......... .......GTT TTATTCTCCA GAAACCTCAA ACACAGAAAC 212 TTAATGGTAT CACATAATAC ACTTCACTTA ATATTTAATT ATCAATCTCA ATATAACAAA 98084 | || TGTATA.... .......... .......... .......... .......... .......... 218 ACTTGAATCT AATGTGATTT CACCCTGTTA TTCTTACAAT AACTTGTATT TATGAAGTTA 98144 ||| | || | ||||| ||||| ||| ||||| |||| ||| |||||| .......... AAT-TTTCTT AAGATTGTTA CTCTTATAAT AACTTTTATT TATAAAGTTA 267 ATGAACAGAA ACAGAAACAA GATGAAGCAG AAAA-AATTT AAAATAGAGG AATTAATCCG 98203 || ||||||| ||||||| || |||||||||| |||| ||| | | |||| | | |||||||||| ATAAACAGAA ACAGAAATAA GATGAAGCAG AAAATAATAT AGAATACAAG AATTAATCCG 327 AGTCCACTGA AACTACTGTG TGTCCTTAAG AAATTTAATC CCCTCACT-G TACCCAAGGT 98262 ||||||| || ||||||| || |||||||||| ||||||||| |||||||| | |||||||||| AGTCCACAGA AACTACTATG TGTCCTTAAG AAATTTAATT CCCTCACTGG TACCCAAGGT 387 TATGGATTAA TTTCTCCCAA GATAAAACGG ATTACACCTG TTAAAGAAAT AGCGGTACCT 98322 |||||||||| |||||| ||| |||||||||| |||| ||||| |||||||||| |||||||||| TATGGATTAA TTTCTCTCAA GATAAAACGG ATTAAACCTG TTAAAGAAAT AGCGGTACCT 447 CAAACTTCTT TAACTTCAAC GAACTGAA-A ACAGCAACAA GTCACACAGA CTCAGTCGAT 98381 |||||||||| |||||||||| ||||| || | ||| |||||| |||||||||| |||||||||| CAAACTTCTT TAACTTCAAC GAACTTAAGA ACAACAACAA GTCACACAGA CTCAGTCGAT 507 CGACACTTTG ATTTTATTTG AGAGAAAAAT AAATGCAGAG AAAGAAAAAA TCTTCAGTGA 98441 |||||||||| |||||||||| |||||||||| ||||||| | |||| ||| | ||||||| CGACACTTTG ATTTTATTTG AGAGAAAAAT AAATGCACCG AAAG-CCAAA TTTTCAGTGT 566 TTAAAAAATC AAAAATTGAC TTCCT 98466 |||||||||| |||| ||||| ||||| TTAAAAAATC AAAATTTGAC TTCCT 591 hqPGS_C10HBa0111D09.1+_SGN-E254845- (97992 98030,98095 98466) ******************************************************************************** EST sequence 103 -strand 653 n (File: SGN-E273518-) 1 GCAGCATGTG AACGATTATG TGCAACCATT GTTGTTGCAG CACTTACTGT TCCAGCATTT 61 GTTTGACTTG AATTAGTCTT TTTTTTCTGT CACAATTGGC AGATAAATTA AGTATTTAAA 121 ATACTAACAG TAAAGAGCAA ATCTTTACAC AACCTGTTTC TGATTTAACG ATAAAGTTTT 181 TATGTTTTTT TAATCGTTAA TCGAATGATT TTAAAAATTC AAGTAGAGTA GAAAACCATA 241 AAGGTTTTAA TCTCCAGAAA CCTCAAACAC AGAAACTGTA TAAATTTTCT TAAGATTGTT 301 ACTCTTATAA TAACTTTTAT TTATAAAGTT AATAAACAGA AACAGAAATA AGATGAAGCA 361 GAAAATAATA TAGAATACAA GAATTAATCC GAGTCCACAG AAACTACTAT GTGTCCTTAA 421 GAAATTTAAT TCCCTCACTG TACCCAAGGT TATGGATTAA TTTCTCTCAA GATAAAACGG 481 ATTAAACCTG TTAAAGAAAT AGCGGTACCT CAAACTTCTT TAACTTCAAC GAACTTAAGA 541 ACAACAACAA GTCACACAGA CTCAGTCGAT CGACACTTTG ATTTTATTTG AGAGAAAAAT 601 AAATGCAGAG AAAGAAAAAT TTTCAGTGTT TAAAAAATCA AAATTTGACT TCC Predicted gene structure (within gDNA segment 94063 to 99370): Exon 1 95088 95127 ( 40 n); cDNA 158 198 ( 41 n); score: 0.575 Intron 1 95128 95906 ( 779 n); Pd: 0.900 (s: 0.57), Pa: 0.651 (s: 0) Exon 2 95907 95918 ( 12 n); cDNA 199 211 ( 13 n); score: 0.625 Intron 2 95919 96216 ( 298 n); Pd: 0.000 (s: 0), Pa: 0.048 (s: 0) Exon 3 96217 96250 ( 34 n); cDNA 212 243 ( 32 n); score: 0.647 Intron 3 96251 97991 (1741 n); Pd: 0.000 (s: 0), Pa: 0.118 (s: 0) Exon 4 97992 98030 ( 39 n); cDNA 244 282 ( 39 n); score: 0.564 Intron 4 98031 98094 ( 64 n); Pd: 0.947 (s: 0), Pa: 0.000 (s: 0.76) Exon 5 98095 98465 ( 371 n); cDNA 283 653 ( 371 n); score: 0.908 MATCH C10HBa0111D09.1+ SGN-E273518- 0.908 496 0.760 C PGS_C10HBa0111D09.1+_SGN-E273518- (95088 95127,95907 95918,96217 96250,97992 98030,98095 98465) Alignment (genomic DNA sequence = upper lines): TTATGAATTT TCCGA-AGGG TTGCAAT-TT TTTCAAATAG TTGTAACCTT TCTGTTAAGA 95145 || ||| ||| ||| | | || || || ||| ||| | || TTCTGA-TTT AACGATAAAG TTTTTATGTT TTTTTAATCG TT........ .......... 198 CACAATAAAC ATTTGTTCAC ACTAACCTTT GTTGTCTATA AATAGAAGGA TTTTCTCTCA 95205 .......... .......... .......... .......... .......... .......... 198 TTTTAAAACA ACTAATTTTA ATCTCTTCTA TTTCCGCAAA ATTAAATATT TTTGTACTTT 95265 .......... .......... .......... .......... .......... .......... 198 GCTCCTTTCG AGTGACTTAC TAACACCACT ATTTTTTATC AATAAGTTGG TGAAAAAATC 95325 .......... .......... .......... .......... .......... .......... 198 TTTCATCGTG AGAGGATGTA ATTCATTAAA TCTCTTGTAT TGGAGGGAAG TAGTTTTTTA 95385 .......... .......... .......... .......... .......... .......... 198 AAGGGGATAT TGTGTATTCA GTGAACTCGA TTTTTTCCTT TATATTTCAT TCTATTCATA 95445 .......... .......... .......... .......... .......... .......... 198 CATATCCTGA TATGTTTTTT ACACTCATTA ATTTATGTTT ATGATATTAA TTGTTGTTTT 95505 .......... .......... .......... .......... .......... .......... 198 TGAGTACATG TTTTAAACTT GGTTTTTTAT ATTTCTGCAA AGTTATTTTC TCTGGTTATA 95565 .......... .......... .......... .......... .......... .......... 198 GATAGAAAAT ATATACATGT AGTAGGTATA TTTATTGTAC GGAAAATAAT TATTGTAAAA 95625 .......... .......... .......... .......... .......... .......... 198 GTGCTATGTA TAAGCTTACA TATTATATTT TCTTACGTAA ATATGAAATT TCTCACTTAT 95685 .......... .......... .......... .......... .......... .......... 198 CAATTGAAGA AATTCATTAT ACAAGTTCAA AAGTTATAAT TGCTTTCATG TGCAAGCGTA 95745 .......... .......... .......... .......... .......... .......... 198 ATTTCTTTTT TGAAAATGTT AACAAATTTT TGGATTTTCT TCTTATCCAT ATATCACAAT 95805 .......... .......... .......... .......... .......... .......... 198 TGTATAATTT TTGTAATTTA AATGTTTCTT TTTTATTACG AAACACCTTT GTATATATAT 95865 .......... .......... .......... .......... .......... .......... 198 TCATATGTTC TTCTTTATTT TTCTTTCAAT GTTGATTGAA GAA-CCAATG ATTGATTATA 95924 || | |||| ||| .......... .......... .......... .......... .AATCGAATG ATTT...... 211 TCGTGAATAA GTCATTCATT AGAGGTTCTT GACTTATGTG ATATTGATAA AATAATCAAA 95984 .......... .......... .......... .......... .......... .......... 211 TTCATATTGG AGTATTGCCA ATATTTTTTA AGAACCTATT TTCTATTATT TTTAATGTAT 96044 .......... .......... .......... .......... .......... .......... 211 CGATATTAGT AAAAATTATT TGCAAGTTCA ATGCAATTAT TATTTAGGAC TGGGTAAAGC 96104 .......... .......... .......... .......... .......... .......... 211 TCAAAAAATT TACCTAGTGT GTATATATAT ATATATATAT ATATATATAT ATATGAAAAG 96164 .......... .......... .......... .......... .......... .......... 211 AAATAGAAGA AGAAATATCT ATACAACTAA TTATAAAATA TAATATAAGA AGTAGAAAGA 96224 || ||| .......... .......... .......... .......... .......... ..TAAAAATT 219 AAAGGATCAG AAGAAGAACA AGAAACGTAC AACACTAAAA CCCTAACAGA GCTCCAAATA 96284 ||| | || |||| ||| | ||| CAAGTA-GAG TAGAA-AACC ATAAAG.... .......... .......... .......... 243 TTGCAAAATA GAACAAAATA ACTGAACAAC TCTTCTTCAA TCCCCTAAAA AAAGGATGCA 96344 .......... .......... .......... .......... .......... .......... 243 CTACTTCACA TCTCTTCATC ATGCTCCCAT GGTGTCACGA TCCAAAATAG ATGTGATGAC 96404 .......... .......... .......... .......... .......... .......... 243 ACTCGTCTTA TCTTATCAAG ACAAGTCAGC CTAACATCCT ACTAATATAA TGAATGTGGA 96464 .......... .......... .......... .......... .......... .......... 243 AGTAAAACGA CAGTAAAAGT CTAATACTAG CCTCTAAAGT ATTGCAATCT AATCAAAAGA 96524 .......... .......... .......... .......... .......... .......... 243 AAAATACAAG TCTCATATGA CATTGTTTCT AGAGTAGAAC AAGATCATAA ATAGCAGTAA 96584 .......... .......... .......... .......... .......... .......... 243 GAAGGTCCAC TGAAATGACA AGCAACGGCC TCATAAATCT CCATAAGAAG CCTCATACAA 96644 .......... .......... .......... .......... .......... .......... 243 GGTAAAGAGA AAATATCACA AAGGTCCAAG CTAATAACCT ACAAACAAAA TAGTAGAAGC 96704 .......... .......... .......... .......... .......... .......... 243 AAGGGGTGAG TATCAATCAC ACGGTACTCA GCAAGTAAAC CTCTAAACAC AATCTAAGAG 96764 .......... .......... .......... .......... .......... .......... 243 GATAAAATAC GGGTACTCCT TACACCCCAA CCGAATCTCC ACAACAACAA CGTGCATAAA 96824 .......... .......... .......... .......... .......... .......... 243 ATAAGTTCAA CCTAACAGTG CACAATTTAC AAGCACATAT CTCAACAATA TCATTCTAAC 96884 .......... .......... .......... .......... .......... .......... 243 AATCACATAT TCTCAACAAT AAGCTCAATA ATATTCATCA ATTACAACAT CCACAAATAA 96944 .......... .......... .......... .......... .......... .......... 243 TATCAGCAAC ACACAAGATC AAGTTCATAA AATAAAGGTA ACCAAAGGAT ATCATGAGAT 97004 .......... .......... .......... .......... .......... .......... 243 GCAATGTAAT ATGACACGAT GAAATGATAT GTCTCAAAAT ACCAAGTACT CTCTCAACCG 97064 .......... .......... .......... .......... .......... .......... 243 TTTATACATG ATACTCCTTG AAAATACATA GAGAGTTCAT GACCTATGGG GGGCTTCGCG 97124 .......... .......... .......... .......... .......... .......... 243 AGGTACATGT ACCGAAACAG ACGATCTCCA TGTTTCTGTG CGGACGATCT CAATGCACTA 97184 .......... .......... .......... .......... .......... .......... 243 TCATAAAATT TAACAATCTC AATCATGGAC GATCTCGATG TGCCCAACTT ATAATCATAA 97244 .......... .......... .......... .......... .......... .......... 243 TCAATTTCTC GCACGGACGG TCTCCATGTG CCCAAATTAT AATCATACTC GATCTTAACA 97304 .......... .......... .......... .......... .......... .......... 243 CGGACGATCT ACATGTGTTA GACCTTTACT CATACCCAAT CTCATGTCAA TGCATGTACA 97364 .......... .......... .......... .......... .......... .......... 243 CAATATGATA TCAAATAAAG AGGATGATGC GATGTCTCAA TAAATAAAAT GTCACTATGA 97424 .......... .......... .......... .......... .......... .......... 243 CATATAATCG CCTCAATAAT CATAATTATA CGGGTTCATT AAAGAACACA ATCACACATA 97484 .......... .......... .......... .......... .......... .......... 243 ATAAATCAAA TCAATATAAT ATCAGTTAAT TTCCATATGC CCTGGCCTTC TCGAATTACA 97544 .......... .......... .......... .......... .......... .......... 243 ATCCACACTC TATAGTAATA AACTTTGCGT TTATAACACC GGTACTCGTA CCTTTCTCAA 97604 .......... .......... .......... .......... .......... .......... 243 CTCATCACAC ACAAACAATT AATCACATTG TCTTTTATTA CCCCTTTTCA TCATCAAAAT 97664 .......... .......... .......... .......... .......... .......... 243 TAATCAAGGT GGACAAGTCA ATCCTTCACC AAGTCTCATT ACTCCCAAAC ACATACCACA 97724 .......... .......... .......... .......... .......... .......... 243 AGGAAATACA CAAATTTCAT ACACTTAACA AGGGTTTAGA AATCCACTTG CATTAATCGA 97784 .......... .......... .......... .......... .......... .......... 243 TCAAGAGTTC ACTTTTGGAA CTTGAGTTTT CCCTTTTCGT TAAACTTTCA AATCAAAGCA 97844 .......... .......... .......... .......... .......... .......... 243 ATTTATTCAA TTAAATTACC GAAATAAGAT TTCAAAATTA ATGACACCCA TACTAGGTGT 97904 .......... .......... .......... .......... .......... .......... 243 TTAACTTACC CCCAAACTCA AATTTAGAAT CAATTTCCTT ATTTTGTTAA CATGTGAACT 97964 .......... .......... .......... .......... .......... .......... 243 CTCATATTTT CTAATTTTCA AGTCTAGGGT GTAGTCTCAA TATCTCCAAA TAACATAATC 98024 | | || |||| | | | || ||| || | .......... .......... .......GTT TTAATCTCCA GAAACCTCAA ACACAGAAAC 276 TTAATGGTAT CACATAATAC ACTTCACTTA ATATTTAATT ATCAATCTCA ATATAACAAA 98084 | || TGTATA.... .......... .......... .......... .......... .......... 282 ACTTGAATCT AATGTGATTT CACCCTGTTA TTCTTACAAT AACTTGTATT TATGAAGTTA 98144 ||| | || | ||||| ||||| ||| ||||| |||| ||| |||||| .......... AAT-TTTCTT AAGATTGTTA CTCTTATAAT AACTTTTATT TATAAAGTTA 331 ATGAACAGAA ACAGAAACAA GATGAAGCAG AAAA-AATTT AAAATAGAGG AATTAATCCG 98203 || ||||||| ||||||| || |||||||||| |||| ||| | | |||| | | |||||||||| ATAAACAGAA ACAGAAATAA GATGAAGCAG AAAATAATAT AGAATACAAG AATTAATCCG 391 AGTCCACTGA AACTACTGTG TGTCCTTAAG AAATTTAATC CCCTCACTGT ACCCAAGGTT 98263 ||||||| || ||||||| || |||||||||| ||||||||| |||||||||| |||||||||| AGTCCACAGA AACTACTATG TGTCCTTAAG AAATTTAATT CCCTCACTGT ACCCAAGGTT 451 ATGGATTAAT TTCTCCCAAG ATAAAACGGA TTACACCTGT TAAAGAAATA GCGGTACCTC 98323 |||||||||| ||||| |||| |||||||||| ||| |||||| |||||||||| |||||||||| ATGGATTAAT TTCTCTCAAG ATAAAACGGA TTAAACCTGT TAAAGAAATA GCGGTACCTC 511 AAACTTCTTT AACTTCAACG AACTGAA-AA CAGCAACAAG TCACACAGAC TCAGTCGATC 98382 |||||||||| |||||||||| |||| || || || ||||||| |||||||||| |||||||||| AAACTTCTTT AACTTCAACG AACTTAAGAA CAACAACAAG TCACACAGAC TCAGTCGATC 571 GACACTTTGA TTTTATTTGA GAGAAAAATA AATGCAGAGA AAGAAAAAAT CTTCAGTGAT 98442 |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| ||||||| | GACACTTTGA TTTTATTTGA GAGAAAAATA AATGCAGAGA AAG-AAAAAT TTTCAGTGTT 630 TAAAAAATCA AAAATTGACT TCC 98465 |||||||||| ||| |||||| ||| TAAAAAATCA AAATTTGACT TCC 653 hqPGS_C10HBa0111D09.1+_SGN-E273518- (97992 98030,98095 98465) ******************************************************************************** EST sequence 81 -strand 688 n (File: SGN-E395007-) 1 TTTATAGCAT TTTCAGCAAG GAACATGTCC GTTCAGTGAA ATTTGTTCAG ACCCATTTTA 61 TCCAGAAAGT TGTGTCTTTT GGAAAAAATA ACAACTTTTT TGAAAAATTG TGTCTGTTAG 121 GAAAATAACT ACTTTTTGGA AAGTAACGAC TTTTCGGAAA AGTAACGACT TTTCGGAATG 181 TTACTGTTAC CCGCAAATTT ATAAGAAATA ATATTAACAG GATTTATTTG ATTTAACAAA 241 AATTGATTGA ATAAATTTTG TCCAAAAAAT ATATCAATCA ATCACATCAT TTGCCAAATC 301 CAAATCCAAA TCCAAAGAAA TGACTTTTCA TTTGCACTTT GCAAATGACT TTTCATTTTC 361 CCTCCAAAGT AGTTCCCTCA CTTTTGATAT TCTCTTTTTT ATTTTTCCAT TCACACTTGT 421 TAAAACCCAA CATAAACATC ATTTTTGTAT GTGACACATA ACAAAGAAGA TTCCAGAATA 481 TTTAGGTCAT GTTTATCATT AGTATGCTGA TTTTAGTAGC AAGTTTAGTT GGTATATTCA 541 CGATACAACT ACTCCTAAGA AATTTGAAAC AATATAGATA GAAATAATGG GGACGTATAA 601 TTTAGGAAAA ATTAGTGGGT TGTAGAGAAT ATATGCAATT CGTGAAAATT GATACCAGCA 661 TATGTGTGTA CTACTTTTTG TGCAGGCA Predicted gene structure (within gDNA segment 97795 to 103589): Exon 1 98467 98647 ( 181 n); cDNA 1 179 ( 179 n); score: 0.925 Intron 1 98648 98873 ( 226 n); Pd: 0.108 (s: 0.89), Pa: 0.809 (s: 0) Exon 2 98874 98901 ( 28 n); cDNA 180 207 ( 28 n); score: 0.643 Intron 2 98902 99280 ( 379 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 3 99281 99313 ( 33 n); cDNA 208 240 ( 33 n); score: 0.697 Intron 3 99314 101876 (2563 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.72) Exon 4 101877 101919 ( 43 n); cDNA 241 280 ( 40 n); score: 0.721 MATCH C10HBa0111D09.1+ SGN-E395007- 0.925 285 0.414 C PGS_C10HBa0111D09.1+_SGN-E395007- (98467 98647,98874 98901,99281 99313,101877 101919) Alignment (genomic DNA sequence = upper lines): TTTATAGCCA TTTTCAGCAA GGAACATGTC TTTTCAGTGA AATCTGTTCA GACCCATTTT 98526 ||||||| || |||||||||| |||||||||| |||||||| ||| |||||| |||||||||| TTTATAG-CA TTTTCAGCAA GGAACATGTC CGTTCAGTGA AATTTGTTCA GACCCATTTT 59 ATCCAGAAAG TTGTGTCTTT TGGAAAAAAT AACAGCTTTT CGAAAAAATT GTGTCTGTTA 98586 |||||||||| |||||||||| |||||||||| |||| ||||| ||||||| |||||||||| ATCCAGAAAG TTGTGTCTTT TGGAAAAAAT AACAACTTTT TTGAAAAATT GTGTCTGTTA 119 GGAAAATAAC TACTTTTTGG AAAGTAACGA CTTTTC-GAA AAGTAACGAC TTTTCGGAAA 98645 |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| ||||||| || GGAAAATAAC TACTTTTTGG AAAGTAACGA CTTTTCGGAA AAGTAACGAC TTTTCGG-AA 178 GAGTAACAAC TTTTCAGAAT GTTACCGTTA CCTGCAAATT TATAAGAAAT GACTTTTCAT 98705 -T........ .......... .......... .......... .......... .......... 179 TTGCACTTTG CAAATGACTT TTCATTTTCC CTCCAAAGTA GTTCCCTCAC TTTTCATATT 98765 .......... .......... .......... .......... .......... .......... 179 CTCTCTTTTC TTTTCCCATT CACATTTGCT AAAACCCAAC AATCCCCCAC ATGAATGGGG 98825 .......... .......... .......... .......... .......... .......... 179 AAGGCTATTG TTAAAACATA TGCATGAAAA AACTTGTGTG TCTTGTAGGT AAAGGTTAAT 98885 || | |||| .......... .......... .......... .......... ........GT TACTGTTACC 191 CGCATCTGGA TAAGTAGGTT TACCTTTAAA CTTTCCGTAG TGAACATATA TCGGATATAC 98945 |||| | | |||| | CGCAAATTTA TAAGAA.... .......... .......... .......... .......... 207 TCGGTCAATC GGTAGATTTG ATATCTTTGA ACCGTCGAGC TTTGGTGTAT ACCTAGACAA 99005 .......... .......... .......... .......... .......... .......... 207 CATATCACAC AATCAACCCT TGAACTGTTC TTAGTTCTCA TTGTTTTGTT CGTTTCAGCC 99065 .......... .......... .......... .......... .......... .......... 207 ATGAACACAT CTTGGATAGT AAGTGCTTAA AGAACTGGCC TTACCGGATT CTCCTTGAAG 99125 .......... .......... .......... .......... .......... .......... 207 CGGCTTACAC TTCACACTTA CATAGGTGAT TTCTAAATGT GTTATCCCAT AGATACACCA 99185 .......... .......... .......... .......... .......... .......... 207 TTTTATATTC CCTGTATCAA ACTTAGAAAC CATTAAAAAT TCCTTATGTC TTTATCCTGG 99245 .......... .......... .......... .......... .......... .......... 207 TTACTAAACA TTGTCTCATC ATGAGAATGG ACCAGAAAAT AATAATAATA TTTTTTTTCT 99305 | ||| | ||| | | ||| ||| | .......... .......... .......... .....ATAAT ATTAACAGGA TTTATTTGAT 232 TTGACAATGT TGAACCGTCA TCAATGACTT TGTTTTATCT CCTTGAACCT AGATCTTGGG 99365 || |||| TTAACAAA.. .......... .......... .......... .......... .......... 240 ATCTCCAGTC TTCTAGGTAG AGTTACCACC ACGATGACTT GTTCTCGGCC ATAGTCTCAT 99425 .......... .......... .......... .......... .......... .......... 240 TCCCGTCGAT GATTTCTCAA CTCCCTCTCT ATTTAGGCCT TTTGTAAGTG GATCCGACAC 99485 .......... .......... .......... .......... .......... .......... 240 ATTATCTTTT GACTTGACAT AGTCAATTGT GATAATTCCA CTAGAGAGTA GTTGTCTCAC 99545 .......... .......... .......... .......... .......... .......... 240 AGAGTTATGT CTTCGTCTTA TGTGACGAGA CTTGCCGTTA TACTTAATGC TTCCAGCCCT 99605 .......... .......... .......... .......... .......... .......... 240 TCCTATTGCA GCTTGACTAT CACAATGTAT GCATATAGGG GCCATTGTTT GGGCCAAAAT 99665 .......... .......... .......... .......... .......... .......... 240 GGAATATCTT CTAAGAAATT CCGGAGTCAT TCAGCTTCTT CACCTGCCTT GTCTAAAGCA 99725 .......... .......... .......... .......... .......... .......... 240 ATGAATTCAG ACTGCATTGT AGAGCGAGCT ATACATGTTT GTTTGGATGA TTTCCAAGAT 99785 .......... .......... .......... .......... .......... .......... 240 ATTGCTCCTC CACCAATAGT AAAAACGTAT CCACTTGTGG ATTTTGTTTC AGTTGACCCA 99845 .......... .......... .......... .......... .......... .......... 240 GTAATCCAAT TTGCATCACT ATATCCTTCA AGAACGGCTG GATATCTTTT GTAATGTAAA 99905 .......... .......... .......... .......... .......... .......... 240 GCATAGTTTT GAGTGTCATC TAAGTATCCC AAAACTCTCT TCATTGCTAA CCAATGATTA 99965 .......... .......... .......... .......... .......... .......... 240 TGATTAGGAT TACTAGTGTA TCGACTCAGT TTACTGATAG AGCAAGCTAT GTCTGGTCGT 100025 .......... .......... .......... .......... .......... .......... 240 GTACAATTCA TGACATACAT TAAGCTTCCC AATACGCTAG CATAGTCAAA TTGAGACTGA 100085 .......... .......... .......... .......... .......... .......... 240 CTTTCGCCTT TATTCTTTGC AAGATGAAGA TTTACATCAA TTGGAGTCTT TGACATTTTA 100145 .......... .......... .......... .......... .......... .......... 240 AAATTCAAAA ATTTGAATTT TTCAAGTATC TTTTGAATAT AATGAGTTTG AGACCATGCT 100205 .......... .......... .......... .......... .......... .......... 240 AGACCGTTAG GAGTTTTAAG AATTTTAATT CCTAATATCA CATCAGCAAC TCCTAAATCT 100265 .......... .......... .......... .......... .......... .......... 240 TTCATATCAA ACTTACTAGC AAGCATACGC TTTGTAGCTT TTATATTAGA AATGTCTTTG 100325 .......... .......... .......... .......... .......... .......... 240 CTCATTATAA GCATATCATC TACATATAGG CATAAAATAA CTTCCTGATT TGGAGTATCT 100385 .......... .......... .......... .......... .......... .......... 240 TTAATGTAAA CACATTTATC ATATTCATTG ATCTAAAATC CATTTGACAA CATGGTTTGA 100445 .......... .......... .......... .......... .......... .......... 240 TCAAACTTTG CATGCCATTG TTTTGGTGCT TGTTTTAGCC CATAAAGTGA CTTAATAAGT 100505 .......... .......... .......... .......... .......... .......... 240 TTGCACACTT TCTTTTCTTT ACCAGGAACT ACAAAACCCT CAGGCTGTTC TATGTAAATT 100565 .......... .......... .......... .......... .......... .......... 240 TCCTCTTCAA GCTCTCCATT TAAGAAGGCT GTTTTTACAT CCATTTGATG AATTTCAAGA 100625 .......... .......... .......... .......... .......... .......... 240 CCGTATACTG CAGCTAGTGC AATAAACATC CGAATTGATG TAATCATAGT CACTGGTGAG 100685 .......... .......... .......... .......... .......... .......... 240 TATGTGTCAA AATAATCAAG ACTTTCTTTT TGTCTAAAAC CTTTGACAAC AAGTCTTGCT 100745 .......... .......... .......... .......... .......... .......... 240 TTATATTTGT CAATAGTTCC ATCGTCTTTC ATCTTCCTTT TAAAGATCCA TTTTGAACCC 100805 .......... .......... .......... .......... .......... .......... 240 AAGGGTTTGT TCCCTGAAGG AAGATCAACC AACTCCCAAG TATGATTGCT TAAGATTGAT 100865 .......... .......... .......... .......... .......... .......... 240 TCAATTTCAC TATTAACAGC CTCCTTCCAA GAGGATGAGT CACTAGACAA CATTGCTTCC 100925 .......... .......... .......... .......... .......... .......... 240 TTGAATGTTT GAGGCTCACT TTCAAGAAGA AATGTTACAA AATCTGATCC AAATGAAGTA 100985 .......... .......... .......... .......... .......... .......... 240 GATGTCTTTT GACGTTTACT GCGTCTTGGA CTTTCTTCAT TTTGTTCATT CTCTTTTGGT 101045 .......... .......... .......... .......... .......... .......... 240 TCTTCTCTGG GTTGTTTAGA TCCCCCACTA GATGACTCAA GTCTAGTTTT ATACGGATAG 101105 .......... .......... .......... .......... .......... .......... 240 ATATGTTCAA AAAATTCACC ACTATCTGAT TCCATTACCG TATTATCATG AATATCTGGA 101165 .......... .......... .......... .......... .......... .......... 240 TGTTCGGACT TATGAACCAA AAATCGACAT GCCTTACTGT TTGTCGCATA TCCAATGAAT 101225 .......... .......... .......... .......... .......... .......... 240 ACACAATCCA CAGTCTTAGG TCCTATTTTT ACCCTCTTAG GTATAGGAAC TTGGACTTTG 101285 .......... .......... .......... .......... .......... .......... 240 GCTAGACACC CCACACTTTG AAATATTTCA AATTGGGTTT TTTACCTTTC CATTTCTCAT 101345 .......... .......... .......... .......... .......... .......... 240 ATGGAATTAC ATTTGTCTTT GAGTGAGGCA CTCTCTTAAG TATCTGATTT GCTGTAAGGA 101405 .......... .......... .......... .......... .......... .......... 240 TAGCTTCCCC CCACAAGTTC TGTGGTAAAC CTGAACTTAT AAGTAATGCA TTCATCATTT 101465 .......... .......... .......... .......... .......... .......... 240 CTCTTAAAGT TCGATTTTTT CTTTCTGCAA TTCCATTAGA CTGAGGAGTG TAGGGAGCAG 101525 .......... .......... .......... .......... .......... .......... 240 TAGTTTGATG GATTATTCCA TTTTCTAAAC ATATTTCTGC AAATGGAGAT TTATATTCTC 101585 .......... .......... .......... .......... .......... .......... 240 CACCTCTATC ACTTCTGATC ATTTTGATCT TTTTATCTAA CTGATTTTCA ACTTCAGTTT 101645 .......... .......... .......... .......... .......... .......... 240 TATATTGCCT AAATGCATCT ATTGTTTCAT CCTTGCTATT TAGCAAATAG ACATAACAAT 101705 .......... .......... .......... .......... .......... .......... 240 ATCTAGTGCA ATCGTCAATA AAAGTTATGA AATACTTTTT CCCACCACGT GATGGTGTTG 101765 .......... .......... .......... .......... .......... .......... 240 ACTTCATGTC ACAAATATCA GTGTGAATCA ATTCTAAAGG ATTTGAATTC CTTTCAACAG 101825 .......... .......... .......... .......... .......... .......... 240 ATTTATAAGA ATGCCTTAGC ATACTTAGAT TCAACACAAA TTTGATATTT TGATTTATTG 101885 ||| |||| .......... .......... .......... .......... .......... .AATTGATTG 249 CACTCAAATT TTGGCAAAAT ATATAAGTTA ATCA 101919 | | ||||| ||| | ||| | ||| | | |||| -AAT-AAATT TTGTCCAAA- AAATATATCA ATCA 280 hqPGS_C10HBa0111D09.1+_SGN-E395007- (98467 98647,98874 98901,99281 99313,101877 101919) ******************************************************************************** EST sequence 55 -strand 397 n (File: SGN-E262800-) 1 TATAAATTTT CTTAAGATTG TTACTCTTAT AATAACTTTT ATTTATAAAG TTAATAAACA 61 GAAACAGAAA TAAGATGAAG CAGAAAATAA TATAGAATAC AAGAATTAAT CCGAGTCCAC 121 AGAAACTACT ATGTGTCCTT AAGAAATTTA ATTCCCTCAC TGTACCCAAG GTTATGGATT 181 AATTTCTCTC AAGATAAAAC GGATTAAACC TGTTAAAGAA ATAGCGGTAC CTCAAACTTC 241 TTTAACTTCA ACGAACTTAA GAACAACAAC AAGTCACACA GACTCAGTCG ATCGACACTT 301 TGATTTTATT TGAGAGAAAA ATAAATGCAG AGAAAGAAAA ATTTTCAGTG TTTAAAAAAT 361 CAAAATTTGA CTTCCTTTTA TAGCCATTTT CAGCAAG Predicted gene structure (within gDNA segment 96843 to 99087): Exon 1 98094 98487 ( 394 n); cDNA 3 397 ( 395 n); score: 0.911 MATCH C10HBa0111D09.1+ SGN-E262800- 0.911 394 0.992 C PGS_C10HBa0111D09.1+_SGN-E262800- (98094 98487) Alignment (genomic DNA sequence = upper lines): TAATGTGATT TCACCCTGTT ATTCTTACAA TAACTTGTAT TTATGAAGTT AATGAACAGA 98153 ||| | | | | |||| | ||||| || |||||| ||| |||| ||||| ||| |||||| TAAATTTTCT TAAGATTGTT ACTCTTATAA TAACTTTTAT TTATAAAGTT AATAAACAGA 62 AACAGAAACA AGATGAAGCA GAAAA-AATT TAAAATAGAG GAATTAATCC GAGTCCACTG 98212 |||||||| | |||||||||| ||||| ||| || |||| | |||||||||| |||||||| | AACAGAAATA AGATGAAGCA GAAAATAATA TAGAATACAA GAATTAATCC GAGTCCACAG 122 AAACTACTGT GTGTCCTTAA GAAATTTAAT CCCCTCACTG TACCCAAGGT TATGGATTAA 98272 |||||||| | |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| AAACTACTAT GTGTCCTTAA GAAATTTAAT TCCCTCACTG TACCCAAGGT TATGGATTAA 182 TTTCTCCCAA GATAAAACGG ATTACACCTG TTAAAGAAAT AGCGGTACCT CAAACTTCTT 98332 |||||| ||| |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| TTTCTCTCAA GATAAAACGG ATTAAACCTG TTAAAGAAAT AGCGGTACCT CAAACTTCTT 242 TAACTTCAAC GAACTGAA-A ACAGCAACAA GTCACACAGA CTCAGTCGAT CGACACTTTG 98391 |||||||||| ||||| || | ||| |||||| |||||||||| |||||||||| |||||||||| TAACTTCAAC GAACTTAAGA ACAACAACAA GTCACACAGA CTCAGTCGAT CGACACTTTG 302 ATTTTATTTG AGAGAAAAAT AAATGCAGAG AAAGAAAAAA TCTTCAGTGA TTAAAAAATC 98451 |||||||||| |||||||||| |||||||||| |||| ||||| | ||||||| |||||||||| ATTTTATTTG AGAGAAAAAT AAATGCAGAG AAAG-AAAAA TTTTCAGTGT TTAAAAAATC 361 AAAAATTGAC TTCCTTTTAT AGCCATTTTC AGCAAG 98487 |||| ||||| |||||||||| |||||||||| |||||| AAAATTTGAC TTCCTTTTAT AGCCATTTTC AGCAAG 397 hqPGS_C10HBa0111D09.1+_SGN-E262800- (98094 98487) ******************************************************************************** EST sequence 35 -strand 387 n (File: SGN-E241550-) 1 CAGCATTTGT TTGACTTGAA TTAGTCATTT TTTTCTGTCA CAAATGGCAG ATAAATTAAG 61 TATTTAAAAT ATTAACAATA AAAAACAATT CTTTACACAA ACTGTTTCTG ATTAAACGAT 121 AAAGTTTTTA TGTTCTTTTA ATCGTTAATC GAATAAATTT TAAAAATTCA AGCAGAATAG 181 AAACCCAACC ATAAAGGTTT TAATCTCCAG AAACCTCAAA TACAAAAACT GTTAAATTTC 241 TTAAGATTGT TATAAAATTG TTATTCTTAC AATAACTTGT ATTTATGAAG TTAATGAATA 301 GAAATAGAAA CAAGATGAAG CAGAAAAAAT TTAAAACAGA AGAATTAATC CGAGTCCACA 361 GAAACTACTG TGTGTCCTTA AGAAATT Predicted gene structure (within gDNA segment 94320 to 98838): Exon 1 95149 95209 ( 61 n); cDNA 80 139 ( 60 n); score: 0.656 Intron 1 95210 95906 ( 697 n); Pd: 0.000 (s: 0.62), Pa: 0.651 (s: 0.60) Exon 2 95907 95948 ( 42 n); cDNA 140 180 ( 41 n); score: 0.595 Intron 2 95949 97883 (1935 n); Pd: 0.646 (s: 0.60), Pa: 0.000 (s: 0.66) Exon 3 97884 97936 ( 53 n); cDNA 181 230 ( 50 n); score: 0.642 Intron 3 97937 98013 ( 77 n); Pd: 0.900 (s: 0.64), Pa: 0.000 (s: 0) Exon 4 98014 98030 ( 17 n); cDNA 231 245 ( 15 n); score: 0.647 Intron 4 98031 98095 ( 65 n); Pd: 0.947 (s: 0), Pa: 0.000 (s: 0.86) Exon 5 98096 98238 ( 143 n); cDNA 246 387 ( 142 n); score: 0.916 MATCH C10HBa0111D09.1+ SGN-E241550- 0.798 316 0.817 C PGS_C10HBa0111D09.1+_SGN-E241550- (95149 95209,95907 95948,97884 97936,98014 98030,98096 98238) Alignment (genomic DNA sequence = upper lines): AATAAACATT TGTTCACACT AACCTTTGTT GTCTATAAAT AGAAGGATTT TCTCTCATTT 95208 || ||||| | | || |||| ||| || | | || || | || | ||| | | | ||| AAAAAACAAT TCTTTACACA AACTGTTTCT GATTA-AACG ATAAAGTTTT TATGTTCTTT 138 TAAAACAACT AATTTTAATC TCTTCTATTT CCGCAAAATT AAATATTTTT GTACTTTGCT 95268 | T......... .......... .......... .......... .......... .......... 139 CCTTTCGAGT GACTTACTAA CACCACTATT TTTTATCAAT AAGTTGGTGA AAAAATCTTT 95328 .......... .......... .......... .......... .......... .......... 139 CATCGTGAGA GGATGTAATT CATTAAATCT CTTGTATTGG AGGGAAGTAG TTTTTTAAAG 95388 .......... .......... .......... .......... .......... .......... 139 GGGATATTGT GTATTCAGTG AACTCGATTT TTTCCTTTAT ATTTCATTCT ATTCATACAT 95448 .......... .......... .......... .......... .......... .......... 139 ATCCTGATAT GTTTTTTACA CTCATTAATT TATGTTTATG ATATTAATTG TTGTTTTTGA 95508 .......... .......... .......... .......... .......... .......... 139 GTACATGTTT TAAACTTGGT TTTTTATATT TCTGCAAAGT TATTTTCTCT GGTTATAGAT 95568 .......... .......... .......... .......... .......... .......... 139 AGAAAATATA TACATGTAGT AGGTATATTT ATTGTACGGA AAATAATTAT TGTAAAAGTG 95628 .......... .......... .......... .......... .......... .......... 139 CTATGTATAA GCTTACATAT TATATTTTCT TACGTAAATA TGAAATTTCT CACTTATCAA 95688 .......... .......... .......... .......... .......... .......... 139 TTGAAGAAAT TCATTATACA AGTTCAAAAG TTATAATTGC TTTCATGTGC AAGCGTAATT 95748 .......... .......... .......... .......... .......... .......... 139 TCTTTTTTGA AAATGTTAAC AAATTTTTGG ATTTTCTTCT TATCCATATA TCACAATTGT 95808 .......... .......... .......... .......... .......... .......... 139 ATAATTTTTG TAATTTAAAT GTTTCTTTTT TATTACGAAA CACCTTTGTA TATATATTCA 95868 .......... .......... .......... .......... .......... .......... 139 TATGTTCTTC TTTATTTTTC TTTCAATGTT GATTGAAGAA CCAATGATTG ATTATATCGT 95928 || | | || | | || || | .......... .......... .......... ........AA TCGTTAATCG AATAAAT-TT 160 GAATAAGTCA TTCATTAGAG GTTCTTGACT TATGTGATAT TGATAAAATA ATCAAATTCA 95988 || || ||| || | || TAAAAATTCA AGCAGAATAG .......... .......... .......... .......... 180 TATTGGAGTA TTGCCAATAT TTTTTAAGAA CCTATTTTCT ATTATTTTTA ATGTATCGAT 96048 .......... .......... .......... .......... .......... .......... 180 ATTAGTAAAA ATTATTTGCA AGTTCAATGC AATTATTATT TAGGACTGGG TAAAGCTCAA 96108 .......... .......... .......... .......... .......... .......... 180 AAAATTTACC TAGTGTGTAT ATATATATAT ATATATATAT ATATATATAT GAAAAGAAAT 96168 .......... .......... .......... .......... .......... .......... 180 AGAAGAAGAA ATATCTATAC AACTAATTAT AAAATATAAT ATAAGAAGTA GAAAGAAAAG 96228 .......... .......... .......... .......... .......... .......... 180 GATCAGAAGA AGAACAAGAA ACGTACAACA CTAAAACCCT AACAGAGCTC CAAATATTGC 96288 .......... .......... .......... .......... .......... .......... 180 AAAATAGAAC AAAATAACTG AACAACTCTT CTTCAATCCC CTAAAAAAAG GATGCACTAC 96348 .......... .......... .......... .......... .......... .......... 180 TTCACATCTC TTCATCATGC TCCCATGGTG TCACGATCCA AAATAGATGT GATGACACTC 96408 .......... .......... .......... .......... .......... .......... 180 GTCTTATCTT ATCAAGACAA GTCAGCCTAA CATCCTACTA ATATAATGAA TGTGGAAGTA 96468 .......... .......... .......... .......... .......... .......... 180 AAACGACAGT AAAAGTCTAA TACTAGCCTC TAAAGTATTG CAATCTAATC AAAAGAAAAA 96528 .......... .......... .......... .......... .......... .......... 180 TACAAGTCTC ATATGACATT GTTTCTAGAG TAGAACAAGA TCATAAATAG CAGTAAGAAG 96588 .......... .......... .......... .......... .......... .......... 180 GTCCACTGAA ATGACAAGCA ACGGCCTCAT AAATCTCCAT AAGAAGCCTC ATACAAGGTA 96648 .......... .......... .......... .......... .......... .......... 180 AAGAGAAAAT ATCACAAAGG TCCAAGCTAA TAACCTACAA ACAAAATAGT AGAAGCAAGG 96708 .......... .......... .......... .......... .......... .......... 180 GGTGAGTATC AATCACACGG TACTCAGCAA GTAAACCTCT AAACACAATC TAAGAGGATA 96768 .......... .......... .......... .......... .......... .......... 180 AAATACGGGT ACTCCTTACA CCCCAACCGA ATCTCCACAA CAACAACGTG CATAAAATAA 96828 .......... .......... .......... .......... .......... .......... 180 GTTCAACCTA ACAGTGCACA ATTTACAAGC ACATATCTCA ACAATATCAT TCTAACAATC 96888 .......... .......... .......... .......... .......... .......... 180 ACATATTCTC AACAATAAGC TCAATAATAT TCATCAATTA CAACATCCAC AAATAATATC 96948 .......... .......... .......... .......... .......... .......... 180 AGCAACACAC AAGATCAAGT TCATAAAATA AAGGTAACCA AAGGATATCA TGAGATGCAA 97008 .......... .......... .......... .......... .......... .......... 180 TGTAATATGA CACGATGAAA TGATATGTCT CAAAATACCA AGTACTCTCT CAACCGTTTA 97068 .......... .......... .......... .......... .......... .......... 180 TACATGATAC TCCTTGAAAA TACATAGAGA GTTCATGACC TATGGGGGGC TTCGCGAGGT 97128 .......... .......... .......... .......... .......... .......... 180 ACATGTACCG AAACAGACGA TCTCCATGTT TCTGTGCGGA CGATCTCAAT GCACTATCAT 97188 .......... .......... .......... .......... .......... .......... 180 AAAATTTAAC AATCTCAATC ATGGACGATC TCGATGTGCC CAACTTATAA TCATAATCAA 97248 .......... .......... .......... .......... .......... .......... 180 TTTCTCGCAC GGACGGTCTC CATGTGCCCA AATTATAATC ATACTCGATC TTAACACGGA 97308 .......... .......... .......... .......... .......... .......... 180 CGATCTACAT GTGTTAGACC TTTACTCATA CCCAATCTCA TGTCAATGCA TGTACACAAT 97368 .......... .......... .......... .......... .......... .......... 180 ATGATATCAA ATAAAGAGGA TGATGCGATG TCTCAATAAA TAAAATGTCA CTATGACATA 97428 .......... .......... .......... .......... .......... .......... 180 TAATCGCCTC AATAATCATA ATTATACGGG TTCATTAAAG AACACAATCA CACATAATAA 97488 .......... .......... .......... .......... .......... .......... 180 ATCAAATCAA TATAATATCA GTTAATTTCC ATATGCCCTG GCCTTCTCGA ATTACAATCC 97548 .......... .......... .......... .......... .......... .......... 180 ACACTCTATA GTAATAAACT TTGCGTTTAT AACACCGGTA CTCGTACCTT TCTCAACTCA 97608 .......... .......... .......... .......... .......... .......... 180 TCACACACAA ACAATTAATC ACATTGTCTT TTATTACCCC TTTTCATCAT CAAAATTAAT 97668 .......... .......... .......... .......... .......... .......... 180 CAAGGTGGAC AAGTCAATCC TTCACCAAGT CTCATTACTC CCAAACACAT ACCACAAGGA 97728 .......... .......... .......... .......... .......... .......... 180 AATACACAAA TTTCATACAC TTAACAAGGG TTTAGAAATC CACTTGCATT AATCGATCAA 97788 .......... .......... .......... .......... .......... .......... 180 GAGTTCACTT TTGGAACTTG AGTTTTCCCT TTTCGTTAAA CTTTCAAATC AAAGCAATTT 97848 .......... .......... .......... .......... .......... .......... 180 ATTCAATTAA ATTACCGAAA TAAGATTTCA AAATTAATGA CACCCATACT AGGTGTTTAA 97908 || || ||||| |||| ||||| .......... .......... .......... .....AAACC CAACCATA-A AGGT-TTTAA 203 CTTACCCCCA AACTCAAATT TAGAATCAAT TTCCTTATTT TGTTAACATG TGAACTCTCA 97968 | || | | ||||||| | || | -TCTCCAGAA ACCTCAAATA CAAAAACT.. .......... .......... .......... 230 TATTTTCTAA TTTTCAAGTC TAGGGTGTAG TCTCAATATC TCCAAATAAC ATAATCTTAA 98028 | | || |||||| .......... .......... .......... .......... .....GTTAA AT-TTCTTAA 244 TGGTATCACA TAATACACTT CACTTAATAT TTAATTATCA ATCTCAATAT AACAAAACTT 98088 | -G........ .......... .......... .......... .......... .......... 245 GAATCTAATG TGATTTCACC CTGTTATTCT TACAATAACT TGTATTTATG AAGTTAATGA 98148 || || | | | ||||||||| |||||||||| |||||||||| |||||||||| .......AT- TGTTATAAAA TTGTTATTCT TACAATAACT TGTATTTATG AAGTTAATGA 297 ACAGAAACAG AAACAAGATG AAGCAGAAAA AATTTAAAAT AGAGGAATTA ATCCGAGTCC 98208 | ||||| || |||||||||| |||||||||| ||||||||| ||| |||||| |||||||||| ATAGAAATAG AAACAAGATG AAGCAGAAAA AATTTAAAAC AGAAGAATTA ATCCGAGTCC 357 ACTGAAACTA CTGTGTGTCC TTAAGAAATT 98238 || ||||||| |||||||||| |||||||||| ACAGAAACTA CTGTGTGTCC TTAAGAAATT 387 hqPGS_C10HBa0111D09.1+_SGN-E241550- (98096 98238) ******************************************************************************** EST sequence 96 -strand 462 n (File: SGN-E236009-) 1 AACGTAGTGA GATAGAAGAA CATCTTTTGT TGTCATCTCT TAAAGTCGAC TCCAGAAGAA 61 TTATGTGCAA CCGTTGTTGT TGCAGCACTT ACTGTTCCAG CATTTGTTTG ACTTGAATTA 121 GTCATTTTTT TCTGTCACAA ATGGCAGATA AATTAAGTAT TTAAAATATT AACAATAAAA 181 AACAAATCTT TACACAAACT GTTTCTGATT TAACGATAAA GTTTTTATGT TCTTTTAATC 241 GTTAATCGAA TAAATTTTAA AAATTCAAGC AGAATAGAAA ACCAACCATA AAGGTTTTAA 301 TCTCCAGAAA CCTCAAATAC AAAAACTGTT AAATTTCTTA AGATTGTTAT AAAATTGTTA 361 TTCTTACAAT AACTTGTATT TATGAAGTTA ATGAATAGAA ATAGAAACAA GATGAAGCAG 421 AAAAAATTTA AAACAGAAGA ATTAATCCGA GTCCACAGAA AC Predicted gene structure (within gDNA segment 93350 to 98870): Exon 1 94003 94013 ( 11 n); cDNA 163 173 ( 11 n); score: 0.636 Intron 1 94014 95144 (1131 n); Pd: 0.283 (s: 0), Pa: 0.000 (s: 0.62) Exon 2 95145 95209 ( 65 n); cDNA 174 236 ( 63 n); score: 0.631 Intron 2 95210 95906 ( 697 n); Pd: 0.000 (s: 0.62), Pa: 0.651 (s: 0.60) Exon 3 95907 95948 ( 42 n); cDNA 237 277 ( 41 n); score: 0.595 Intron 3 95949 97041 (1093 n); Pd: 0.646 (s: 0.60), Pa: 0.000 (s: 0) Exon 4 97042 97049 ( 8 n); cDNA 278 285 ( 8 n); score: 0.875 Intron 4 97050 97891 ( 842 n); Pd: 0.376 (s: 0), Pa: 0.000 (s: 0.67) Exon 5 97892 97936 ( 45 n); cDNA 286 327 ( 42 n); score: 0.667 Intron 5 97937 98013 ( 77 n); Pd: 0.900 (s: 0.67), Pa: 0.000 (s: 0) Exon 6 98014 98030 ( 17 n); cDNA 328 342 ( 15 n); score: 0.647 Intron 6 98031 98095 ( 65 n); Pd: 0.947 (s: 0), Pa: 0.000 (s: 0.86) Exon 7 98096 98216 ( 121 n); cDNA 343 462 ( 120 n); score: 0.901 MATCH C10HBa0111D09.1+ SGN-E236009- 0.806 309 0.669 C PGS_C10HBa0111D09.1+_SGN-E236009- (94003 94013,95145 95209,95907 95948,97042 97049,97892 97936,98014 98030,98096 98216) Alignment (genomic DNA sequence = upper lines): AAAACACAAG CGTATGTTTT GTTTGATCTC TTGGAATGAA ATCAAAAACA CAATCCCCTT 94062 |||| | | | AAAATATTAA C......... .......... .......... .......... .......... 173 CATAAGCTTG GAATGAAATC AAAAACAAGA AAACAGAATA CACTTGCTCC GTCACAAGAA 94122 .......... .......... .......... .......... .......... .......... 173 CATTCATGTT TGTTGCTTTG GCTCTATAAA AGTACTGTGT ATGTTGGTCC TCTATGCATT 94182 .......... .......... .......... .......... .......... .......... 173 TCTAAGGATA AGATATATGT ACACCAACAT TTTTGGAGTG TTGAAAAAAG GAAGATATTT 94242 .......... .......... .......... .......... .......... .......... 173 CTTTTTTAAT TGACTTTACT TTCATTGGTT AATTTCAAGT TGTAATTTGA ATTTAAACTC 94302 .......... .......... .......... .......... .......... .......... 173 GTAAAATAAA AATTGGTTAT TTATTTACAA GCAAGAATTG GTATGATCTC GGGCCCGTGC 94362 .......... .......... .......... .......... .......... .......... 173 CTTGCACGGG CATTCCACAT CTAGTCTAGT ATACATACAA GTGATAGTAT TACATCTGGA 94422 .......... .......... .......... .......... .......... .......... 173 TTGGGTTTAT CCCTCTAAGA AGTTACTTCT TTCTAGAAAG TTAAATATGT GTTTATTAAT 94482 .......... .......... .......... .......... .......... .......... 173 TTAATTTTAA TTTAATATTT TTTTAAAATA ATATACCTTC TTTATTCGAA ATAGAGAGGT 94542 .......... .......... .......... .......... .......... .......... 173 ATTGAATTTG AGCTTTTGGA TATATATTAT ATTTTACTTT TTATATTTTA AAAATTCTTT 94602 .......... .......... .......... .......... .......... .......... 173 TAAAGATATA TATTGACAAT TTTATAAAAT AAATCTAACC ATCAAAAATA ATAAATATAA 94662 .......... .......... .......... .......... .......... .......... 173 ATTTACTACT AAATCATAAA AGAAAAAATA TGTGTGTGGG AATATTTTCT TAACAAAAAA 94722 .......... .......... .......... .......... .......... .......... 173 TTTAAAAATT GAATCTATAA TTGTATTTTT GATATATCAT ATATCATATA TTTATATAAA 94782 .......... .......... .......... .......... .......... .......... 173 AGATAGCTCT AGGCCCACCT ATATGGCATC ACCACAAGCA ATAATGTCCT TTTAAAATTA 94842 .......... .......... .......... .......... .......... .......... 173 CTTATTTCCA AAACTACCCT TCATATTTCC TTAAAAGATA TGACTTTTAT GAAAAGCTAC 94902 .......... .......... .......... .......... .......... .......... 173 AATTTTAATG AATAGTTGCA ACTTTTATCA AAAGTTATGA CATTAATAAA GAGTTGTGAG 94962 .......... .......... .......... .......... .......... .......... 173 TTTTATCAAA AGTTGTGACT TTAATGAAGA GTTACTACTT TTATCAAAAG TCATGACTTT 95022 .......... .......... .......... .......... .......... .......... 173 TATGAAAAGT TGTGACATTA ATGAAAAATT GCGACTTTAT GAAAAGTTTG TGACTTTTAT 95082 .......... .......... .......... .......... .......... .......... 173 GAAGGTTATG AATTTTCCGA AGGGTTGCAA TTTTTTCAAA TAGTTGTAAC CTTTCTGTTA 95142 .......... .......... .......... .......... .......... .......... 173 AGACACAATA AACATTTGTT CACACTAACC TTTGTTGTCT ATAAATAGAA GGATTTTCTC 95202 | | || | |||| | || |||| ||| || || | ||| | || | |||| | ..A-ATAAAA AACAAATCTT TACACAAACT GTTTCTG-AT TTAACGATAA AGTTTTTATG 229 TCATTTTAAA ACAACTAATT TTAATCTCTT CTATTTCCGC AAAATTAAAT ATTTTTGTAC 95262 | |||| TTCTTTT... .......... .......... .......... .......... .......... 236 TTTGCTCCTT TCGAGTGACT TACTAACACC ACTATTTTTT ATCAATAAGT TGGTGAAAAA 95322 .......... .......... .......... .......... .......... .......... 236 ATCTTTCATC GTGAGAGGAT GTAATTCATT AAATCTCTTG TATTGGAGGG AAGTAGTTTT 95382 .......... .......... .......... .......... .......... .......... 236 TTAAAGGGGA TATTGTGTAT TCAGTGAACT CGATTTTTTC CTTTATATTT CATTCTATTC 95442 .......... .......... .......... .......... .......... .......... 236 ATACATATCC TGATATGTTT TTTACACTCA TTAATTTATG TTTATGATAT TAATTGTTGT 95502 .......... .......... .......... .......... .......... .......... 236 TTTTGAGTAC ATGTTTTAAA CTTGGTTTTT TATATTTCTG CAAAGTTATT TTCTCTGGTT 95562 .......... .......... .......... .......... .......... .......... 236 ATAGATAGAA AATATATACA TGTAGTAGGT ATATTTATTG TACGGAAAAT AATTATTGTA 95622 .......... .......... .......... .......... .......... .......... 236 AAAGTGCTAT GTATAAGCTT ACATATTATA TTTTCTTACG TAAATATGAA ATTTCTCACT 95682 .......... .......... .......... .......... .......... .......... 236 TATCAATTGA AGAAATTCAT TATACAAGTT CAAAAGTTAT AATTGCTTTC ATGTGCAAGC 95742 .......... .......... .......... .......... .......... .......... 236 GTAATTTCTT TTTTGAAAAT GTTAACAAAT TTTTGGATTT TCTTCTTATC CATATATCAC 95802 .......... .......... .......... .......... .......... .......... 236 AATTGTATAA TTTTTGTAAT TTAAATGTTT CTTTTTTATT ACGAAACACC TTTGTATATA 95862 .......... .......... .......... .......... .......... .......... 236 TATTCATATG TTCTTCTTTA TTTTTCTTTC AATGTTGATT GAAGAACCAA TGATTGATTA 95922 || | | || || || .......... .......... .......... .......... ....AATCGT TAATCGAATA 252 TATCGTGAAT AAGTCATTCA TTAGAGGTTC TTGACTTATG TGATATTGAT AAAATAATCA 95982 || | || || ||| || | || AAT-TTTAAA AATTCAAGCA GAATAG.... .......... .......... .......... 277 AATTCATATT GGAGTATTGC CAATATTTTT TAAGAACCTA TTTTCTATTA TTTTTAATGT 96042 .......... .......... .......... .......... .......... .......... 277 ATCGATATTA GTAAAAATTA TTTGCAAGTT CAATGCAATT ATTATTTAGG ACTGGGTAAA 96102 .......... .......... .......... .......... .......... .......... 277 GCTCAAAAAA TTTACCTAGT GTGTATATAT ATATATATAT ATATATATAT ATATATGAAA 96162 .......... .......... .......... .......... .......... .......... 277 AGAAATAGAA GAAGAAATAT CTATACAACT AATTATAAAA TATAATATAA GAAGTAGAAA 96222 .......... .......... .......... .......... .......... .......... 277 GAAAAGGATC AGAAGAAGAA CAAGAAACGT ACAACACTAA AACCCTAACA GAGCTCCAAA 96282 .......... .......... .......... .......... .......... .......... 277 TATTGCAAAA TAGAACAAAA TAACTGAACA ACTCTTCTTC AATCCCCTAA AAAAAGGATG 96342 .......... .......... .......... .......... .......... .......... 277 CACTACTTCA CATCTCTTCA TCATGCTCCC ATGGTGTCAC GATCCAAAAT AGATGTGATG 96402 .......... .......... .......... .......... .......... .......... 277 ACACTCGTCT TATCTTATCA AGACAAGTCA GCCTAACATC CTACTAATAT AATGAATGTG 96462 .......... .......... .......... .......... .......... .......... 277 GAAGTAAAAC GACAGTAAAA GTCTAATACT AGCCTCTAAA GTATTGCAAT CTAATCAAAA 96522 .......... .......... .......... .......... .......... .......... 277 GAAAAATACA AGTCTCATAT GACATTGTTT CTAGAGTAGA ACAAGATCAT AAATAGCAGT 96582 .......... .......... .......... .......... .......... .......... 277 AAGAAGGTCC ACTGAAATGA CAAGCAACGG CCTCATAAAT CTCCATAAGA AGCCTCATAC 96642 .......... .......... .......... .......... .......... .......... 277 AAGGTAAAGA GAAAATATCA CAAAGGTCCA AGCTAATAAC CTACAAACAA AATAGTAGAA 96702 .......... .......... .......... .......... .......... .......... 277 GCAAGGGGTG AGTATCAATC ACACGGTACT CAGCAAGTAA ACCTCTAAAC ACAATCTAAG 96762 .......... .......... .......... .......... .......... .......... 277 AGGATAAAAT ACGGGTACTC CTTACACCCC AACCGAATCT CCACAACAAC AACGTGCATA 96822 .......... .......... .......... .......... .......... .......... 277 AAATAAGTTC AACCTAACAG TGCACAATTT ACAAGCACAT ATCTCAACAA TATCATTCTA 96882 .......... .......... .......... .......... .......... .......... 277 ACAATCACAT ATTCTCAACA ATAAGCTCAA TAATATTCAT CAATTACAAC ATCCACAAAT 96942 .......... .......... .......... .......... .......... .......... 277 AATATCAGCA ACACACAAGA TCAAGTTCAT AAAATAAAGG TAACCAAAGG ATATCATGAG 97002 .......... .......... .......... .......... .......... .......... 277 ATGCAATGTA ATATGACACG ATGAAATGAT ATGTCTCAAA ATACCAAGTA CTCTCTCAAC 97062 | | ||||| .......... .......... .......... .........A AAACCAA... .......... 285 CGTTTATACA TGATACTCCT TGAAAATACA TAGAGAGTTC ATGACCTATG GGGGGCTTCG 97122 .......... .......... .......... .......... .......... .......... 285 CGAGGTACAT GTACCGAAAC AGACGATCTC CATGTTTCTG TGCGGACGAT CTCAATGCAC 97182 .......... .......... .......... .......... .......... .......... 285 TATCATAAAA TTTAACAATC TCAATCATGG ACGATCTCGA TGTGCCCAAC TTATAATCAT 97242 .......... .......... .......... .......... .......... .......... 285 AATCAATTTC TCGCACGGAC GGTCTCCATG TGCCCAAATT ATAATCATAC TCGATCTTAA 97302 .......... .......... .......... .......... .......... .......... 285 CACGGACGAT CTACATGTGT TAGACCTTTA CTCATACCCA ATCTCATGTC AATGCATGTA 97362 .......... .......... .......... .......... .......... .......... 285 CACAATATGA TATCAAATAA AGAGGATGAT GCGATGTCTC AATAAATAAA ATGTCACTAT 97422 .......... .......... .......... .......... .......... .......... 285 GACATATAAT CGCCTCAATA ATCATAATTA TACGGGTTCA TTAAAGAACA CAATCACACA 97482 .......... .......... .......... .......... .......... .......... 285 TAATAAATCA AATCAATATA ATATCAGTTA ATTTCCATAT GCCCTGGCCT TCTCGAATTA 97542 .......... .......... .......... .......... .......... .......... 285 CAATCCACAC TCTATAGTAA TAAACTTTGC GTTTATAACA CCGGTACTCG TACCTTTCTC 97602 .......... .......... .......... .......... .......... .......... 285 AACTCATCAC ACACAAACAA TTAATCACAT TGTCTTTTAT TACCCCTTTT CATCATCAAA 97662 .......... .......... .......... .......... .......... .......... 285 ATTAATCAAG GTGGACAAGT CAATCCTTCA CCAAGTCTCA TTACTCCCAA ACACATACCA 97722 .......... .......... .......... .......... .......... .......... 285 CAAGGAAATA CACAAATTTC ATACACTTAA CAAGGGTTTA GAAATCCACT TGCATTAATC 97782 .......... .......... .......... .......... .......... .......... 285 GATCAAGAGT TCACTTTTGG AACTTGAGTT TTCCCTTTTC GTTAAACTTT CAAATCAAAG 97842 .......... .......... .......... .......... .......... .......... 285 CAATTTATTC AATTAAATTA CCGAAATAAG ATTTCAAAAT TAATGACACC CATACTAGGT 97902 | |||| |||| .......... .......... .......... .......... .........C CATAA-AGGT 295 GTTTAACTTA CCCCCAAACT CAAATTTAGA ATCAATTTCC TTATTTTGTT AACATGTGAA 97962 ||||| | || || || ||||| | | | | -TTTAA-TCT CCAGAAACCT CAAATACAAA AACT...... .......... .......... 327 CTCTCATATT TTCTAATTTT CAAGTCTAGG GTGTAGTCTC AATATCTCCA AATAACATAA 98022 | | || .......... .......... .......... .......... .......... .GTTAAATT- 335 TCTTAATGGT ATCACATAAT ACACTTCACT TAATATTTAA TTATCAATCT CAATATAACA 98082 |||||| | TCTTAA-G.. .......... .......... .......... .......... .......... 342 AAACTTGAAT CTAATGTGAT TTCACCCTGT TATTCTTACA ATAACTTGTA TTTATGAAGT 98142 || || | | | ||| |||||||||| |||||||||| |||||||||| .......... ...AT-TGTT ATAAAATTGT TATTCTTACA ATAACTTGTA TTTATGAAGT 388 TAATGAACAG AAACAGAAAC AAGATGAAGC AGAAAAAATT TAAAATAGAG GAATTAATCC 98202 ||||||| || ||| |||||| |||||||||| |||||||||| ||||| ||| |||||||||| TAATGAATAG AAATAGAAAC AAGATGAAGC AGAAAAAATT TAAAACAGAA GAATTAATCC 448 GAGTCCACTG AAAC 98216 |||||||| | |||| GAGTCCACAG AAAC 462 hqPGS_C10HBa0111D09.1+_SGN-E236009- (98096 98216) ******************************************************************************** EST sequence 46 -strand 707 n (File: SGN-E263584-) 1 CGTTCATCAG CCGAAGTTTC ATCTGACATA ACAGGAACAT TCTCATTGAT GAACTTCTGC 61 AGACTCAACG TAGTGAGATA GAAGAACATC TTTTGCTGCC ATCTCTTAAA GTCGACTCCA 121 GAAAACTTTG CAGGTTTCTC AGCCGGTGCT AAGGCAGCAT GTGAACGATT ATGTGCAACC 181 ATTGTTGTTG CAGCACTTAC TGTTCCAGCA TTTGTTTGAC TTGAATTAGT CTTTTTTTTC 241 TGTCACAATT GGCAGATAAA TTAAGTATTT AAAATACTAA CAGTAAAGAG CAAATCTTTA 301 CACAACCTGT TTCTGATTTA ACGATAAAGT TTTTATGTTT TTTTAATCGT TAATCGAATG 361 ATTTTAAAAA TTCAAGTAGA GTAGAAAACC ATAAAGGTTT TAATCTCCAG AAACCTCAAA 421 CACAGAAACT GTATAAATTT TCTTAAGATT GTTACTCTTA TAATAACTTT TATTTATAAA 481 GTTAATAAAC AGAAACAGAA ATAAGATGAA GCAGAAAATA ATATAGAATA CAAGAATTAA 541 TCCGAGTCCA CAGAAACTAC TATGTGTCCT TAAGAAATTT AATTCCCTCA CTGTACCCAA 601 GGTTATGGAT TAATTTCTCT CAAGATAAAA CGGATTAAAC CTGTTAAAGA AATAGCGGTA 661 CCTCAAACTT CTTTAACTTC AACGAACTTA AGAACAACAA CAAGTCA Predicted gene structure (within gDNA segment 92533 to 99137): Exon 1 94003 94013 ( 11 n); cDNA 419 429 ( 11 n); score: 0.727 Intron 1 94014 95086 (1073 n); Pd: 0.283 (s: 0), Pa: 0.192 (s: 0) Exon 2 95087 95105 ( 19 n); cDNA 430 448 ( 19 n); score: 0.684 Intron 2 95106 98108 (3003 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.88) Exon 3 98109 98365 ( 257 n); cDNA 449 707 ( 259 n); score: 0.911 MATCH C10HBa0111D09.1+ SGN-E263584- 0.911 287 0.406 C PGS_C10HBa0111D09.1+_SGN-E263584- (94003 94013,95087 95105,98109 98365) Alignment (genomic DNA sequence = upper lines): AAAACACAAG CGTATGTTTT GTTTGATCTC TTGGAATGAA ATCAAAAACA CAATCCCCTT 94062 || ||| || | AACACAGAAA C......... .......... .......... .......... .......... 429 CATAAGCTTG GAATGAAATC AAAAACAAGA AAACAGAATA CACTTGCTCC GTCACAAGAA 94122 .......... .......... .......... .......... .......... .......... 429 CATTCATGTT TGTTGCTTTG GCTCTATAAA AGTACTGTGT ATGTTGGTCC TCTATGCATT 94182 .......... .......... .......... .......... .......... .......... 429 TCTAAGGATA AGATATATGT ACACCAACAT TTTTGGAGTG TTGAAAAAAG GAAGATATTT 94242 .......... .......... .......... .......... .......... .......... 429 CTTTTTTAAT TGACTTTACT TTCATTGGTT AATTTCAAGT TGTAATTTGA ATTTAAACTC 94302 .......... .......... .......... .......... .......... .......... 429 GTAAAATAAA AATTGGTTAT TTATTTACAA GCAAGAATTG GTATGATCTC GGGCCCGTGC 94362 .......... .......... .......... .......... .......... .......... 429 CTTGCACGGG CATTCCACAT CTAGTCTAGT ATACATACAA GTGATAGTAT TACATCTGGA 94422 .......... .......... .......... .......... .......... .......... 429 TTGGGTTTAT CCCTCTAAGA AGTTACTTCT TTCTAGAAAG TTAAATATGT GTTTATTAAT 94482 .......... .......... .......... .......... .......... .......... 429 TTAATTTTAA TTTAATATTT TTTTAAAATA ATATACCTTC TTTATTCGAA ATAGAGAGGT 94542 .......... .......... .......... .......... .......... .......... 429 ATTGAATTTG AGCTTTTGGA TATATATTAT ATTTTACTTT TTATATTTTA AAAATTCTTT 94602 .......... .......... .......... .......... .......... .......... 429 TAAAGATATA TATTGACAAT TTTATAAAAT AAATCTAACC ATCAAAAATA ATAAATATAA 94662 .......... .......... .......... .......... .......... .......... 429 ATTTACTACT AAATCATAAA AGAAAAAATA TGTGTGTGGG AATATTTTCT TAACAAAAAA 94722 .......... .......... .......... .......... .......... .......... 429 TTTAAAAATT GAATCTATAA TTGTATTTTT GATATATCAT ATATCATATA TTTATATAAA 94782 .......... .......... .......... .......... .......... .......... 429 AGATAGCTCT AGGCCCACCT ATATGGCATC ACCACAAGCA ATAATGTCCT TTTAAAATTA 94842 .......... .......... .......... .......... .......... .......... 429 CTTATTTCCA AAACTACCCT TCATATTTCC TTAAAAGATA TGACTTTTAT GAAAAGCTAC 94902 .......... .......... .......... .......... .......... .......... 429 AATTTTAATG AATAGTTGCA ACTTTTATCA AAAGTTATGA CATTAATAAA GAGTTGTGAG 94962 .......... .......... .......... .......... .......... .......... 429 TTTTATCAAA AGTTGTGACT TTAATGAAGA GTTACTACTT TTATCAAAAG TCATGACTTT 95022 .......... .......... .......... .......... .......... .......... 429 TATGAAAAGT TGTGACATTA ATGAAAAATT GCGACTTTAT GAAAAGTTTG TGACTTTTAT 95082 .......... .......... .......... .......... .......... .......... 429 GAAGGTTATG AATTTTCCGA AGGGTTGCAA TTTTTTCAAA TAGTTGTAAC CTTTCTGTTA 95142 ||| ||||||| | || ....TGTATA AATTTTCTTA AGA....... .......... .......... .......... 448 AGACACAATA AACATTTGTT CACACTAACC TTTGTTGTCT ATAAATAGAA GGATTTTCTC 95202 .......... .......... .......... .......... .......... .......... 448 TCATTTTAAA ACAACTAATT TTAATCTCTT CTATTTCCGC AAAATTAAAT ATTTTTGTAC 95262 .......... .......... .......... .......... .......... .......... 448 TTTGCTCCTT TCGAGTGACT TACTAACACC ACTATTTTTT ATCAATAAGT TGGTGAAAAA 95322 .......... .......... .......... .......... .......... .......... 448 ATCTTTCATC GTGAGAGGAT GTAATTCATT AAATCTCTTG TATTGGAGGG AAGTAGTTTT 95382 .......... .......... .......... .......... .......... .......... 448 TTAAAGGGGA TATTGTGTAT TCAGTGAACT CGATTTTTTC CTTTATATTT CATTCTATTC 95442 .......... .......... .......... .......... .......... .......... 448 ATACATATCC TGATATGTTT TTTACACTCA TTAATTTATG TTTATGATAT TAATTGTTGT 95502 .......... .......... .......... .......... .......... .......... 448 TTTTGAGTAC ATGTTTTAAA CTTGGTTTTT TATATTTCTG CAAAGTTATT TTCTCTGGTT 95562 .......... .......... .......... .......... .......... .......... 448 ATAGATAGAA AATATATACA TGTAGTAGGT ATATTTATTG TACGGAAAAT AATTATTGTA 95622 .......... .......... .......... .......... .......... .......... 448 AAAGTGCTAT GTATAAGCTT ACATATTATA TTTTCTTACG TAAATATGAA ATTTCTCACT 95682 .......... .......... .......... .......... .......... .......... 448 TATCAATTGA AGAAATTCAT TATACAAGTT CAAAAGTTAT AATTGCTTTC ATGTGCAAGC 95742 .......... .......... .......... .......... .......... .......... 448 GTAATTTCTT TTTTGAAAAT GTTAACAAAT TTTTGGATTT TCTTCTTATC CATATATCAC 95802 .......... .......... .......... .......... .......... .......... 448 AATTGTATAA TTTTTGTAAT TTAAATGTTT CTTTTTTATT ACGAAACACC TTTGTATATA 95862 .......... .......... .......... .......... .......... .......... 448 TATTCATATG TTCTTCTTTA TTTTTCTTTC AATGTTGATT GAAGAACCAA TGATTGATTA 95922 .......... .......... .......... .......... .......... .......... 448 TATCGTGAAT AAGTCATTCA TTAGAGGTTC TTGACTTATG TGATATTGAT AAAATAATCA 95982 .......... .......... .......... .......... .......... .......... 448 AATTCATATT GGAGTATTGC CAATATTTTT TAAGAACCTA TTTTCTATTA TTTTTAATGT 96042 .......... .......... .......... .......... .......... .......... 448 ATCGATATTA GTAAAAATTA TTTGCAAGTT CAATGCAATT ATTATTTAGG ACTGGGTAAA 96102 .......... .......... .......... .......... .......... .......... 448 GCTCAAAAAA TTTACCTAGT GTGTATATAT ATATATATAT ATATATATAT ATATATGAAA 96162 .......... .......... .......... .......... .......... .......... 448 AGAAATAGAA GAAGAAATAT CTATACAACT AATTATAAAA TATAATATAA GAAGTAGAAA 96222 .......... .......... .......... .......... .......... .......... 448 GAAAAGGATC AGAAGAAGAA CAAGAAACGT ACAACACTAA AACCCTAACA GAGCTCCAAA 96282 .......... .......... .......... .......... .......... .......... 448 TATTGCAAAA TAGAACAAAA TAACTGAACA ACTCTTCTTC AATCCCCTAA AAAAAGGATG 96342 .......... .......... .......... .......... .......... .......... 448 CACTACTTCA CATCTCTTCA TCATGCTCCC ATGGTGTCAC GATCCAAAAT AGATGTGATG 96402 .......... .......... .......... .......... .......... .......... 448 ACACTCGTCT TATCTTATCA AGACAAGTCA GCCTAACATC CTACTAATAT AATGAATGTG 96462 .......... .......... .......... .......... .......... .......... 448 GAAGTAAAAC GACAGTAAAA GTCTAATACT AGCCTCTAAA GTATTGCAAT CTAATCAAAA 96522 .......... .......... .......... .......... .......... .......... 448 GAAAAATACA AGTCTCATAT GACATTGTTT CTAGAGTAGA ACAAGATCAT AAATAGCAGT 96582 .......... .......... .......... .......... .......... .......... 448 AAGAAGGTCC ACTGAAATGA CAAGCAACGG CCTCATAAAT CTCCATAAGA AGCCTCATAC 96642 .......... .......... .......... .......... .......... .......... 448 AAGGTAAAGA GAAAATATCA CAAAGGTCCA AGCTAATAAC CTACAAACAA AATAGTAGAA 96702 .......... .......... .......... .......... .......... .......... 448 GCAAGGGGTG AGTATCAATC ACACGGTACT CAGCAAGTAA ACCTCTAAAC ACAATCTAAG 96762 .......... .......... .......... .......... .......... .......... 448 AGGATAAAAT ACGGGTACTC CTTACACCCC AACCGAATCT CCACAACAAC AACGTGCATA 96822 .......... .......... .......... .......... .......... .......... 448 AAATAAGTTC AACCTAACAG TGCACAATTT ACAAGCACAT ATCTCAACAA TATCATTCTA 96882 .......... .......... .......... .......... .......... .......... 448 ACAATCACAT ATTCTCAACA ATAAGCTCAA TAATATTCAT CAATTACAAC ATCCACAAAT 96942 .......... .......... .......... .......... .......... .......... 448 AATATCAGCA ACACACAAGA TCAAGTTCAT AAAATAAAGG TAACCAAAGG ATATCATGAG 97002 .......... .......... .......... .......... .......... .......... 448 ATGCAATGTA ATATGACACG ATGAAATGAT ATGTCTCAAA ATACCAAGTA CTCTCTCAAC 97062 .......... .......... .......... .......... .......... .......... 448 CGTTTATACA TGATACTCCT TGAAAATACA TAGAGAGTTC ATGACCTATG GGGGGCTTCG 97122 .......... .......... .......... .......... .......... .......... 448 CGAGGTACAT GTACCGAAAC AGACGATCTC CATGTTTCTG TGCGGACGAT CTCAATGCAC 97182 .......... .......... .......... .......... .......... .......... 448 TATCATAAAA TTTAACAATC TCAATCATGG ACGATCTCGA TGTGCCCAAC TTATAATCAT 97242 .......... .......... .......... .......... .......... .......... 448 AATCAATTTC TCGCACGGAC GGTCTCCATG TGCCCAAATT ATAATCATAC TCGATCTTAA 97302 .......... .......... .......... .......... .......... .......... 448 CACGGACGAT CTACATGTGT TAGACCTTTA CTCATACCCA ATCTCATGTC AATGCATGTA 97362 .......... .......... .......... .......... .......... .......... 448 CACAATATGA TATCAAATAA AGAGGATGAT GCGATGTCTC AATAAATAAA ATGTCACTAT 97422 .......... .......... .......... .......... .......... .......... 448 GACATATAAT CGCCTCAATA ATCATAATTA TACGGGTTCA TTAAAGAACA CAATCACACA 97482 .......... .......... .......... .......... .......... .......... 448 TAATAAATCA AATCAATATA ATATCAGTTA ATTTCCATAT GCCCTGGCCT TCTCGAATTA 97542 .......... .......... .......... .......... .......... .......... 448 CAATCCACAC TCTATAGTAA TAAACTTTGC GTTTATAACA CCGGTACTCG TACCTTTCTC 97602 .......... .......... .......... .......... .......... .......... 448 AACTCATCAC ACACAAACAA TTAATCACAT TGTCTTTTAT TACCCCTTTT CATCATCAAA 97662 .......... .......... .......... .......... .......... .......... 448 ATTAATCAAG GTGGACAAGT CAATCCTTCA CCAAGTCTCA TTACTCCCAA ACACATACCA 97722 .......... .......... .......... .......... .......... .......... 448 CAAGGAAATA CACAAATTTC ATACACTTAA CAAGGGTTTA GAAATCCACT TGCATTAATC 97782 .......... .......... .......... .......... .......... .......... 448 GATCAAGAGT TCACTTTTGG AACTTGAGTT TTCCCTTTTC GTTAAACTTT CAAATCAAAG 97842 .......... .......... .......... .......... .......... .......... 448 CAATTTATTC AATTAAATTA CCGAAATAAG ATTTCAAAAT TAATGACACC CATACTAGGT 97902 .......... .......... .......... .......... .......... .......... 448 GTTTAACTTA CCCCCAAACT CAAATTTAGA ATCAATTTCC TTATTTTGTT AACATGTGAA 97962 .......... .......... .......... .......... .......... .......... 448 CTCTCATATT TTCTAATTTT CAAGTCTAGG GTGTAGTCTC AATATCTCCA AATAACATAA 98022 .......... .......... .......... .......... .......... .......... 448 TCTTAATGGT ATCACATAAT ACACTTCACT TAATATTTAA TTATCAATCT CAATATAACA 98082 .......... .......... .......... .......... .......... .......... 448 AAACTTGAAT CTAATGTGAT TTCACCCTGT TATTCTTACA ATAACTTGTA TTTATGAAGT 98142 ||| || ||||| | ||||||| || ||||| |||| .......... .......... ......TTGT TACTCTTATA ATAACTTTTA TTTATAAAGT 482 TAATGAACAG AAACAGAAAC AAGATGAAGC AGAAAA-AAT TTAAAATAGA GGAATTAATC 98201 |||| ||||| ||||||||| |||||||||| |||||| ||| || |||| | ||||||||| TAATAAACAG AAACAGAAAT AAGATGAAGC AGAAAATAAT ATAGAATACA AGAATTAATC 542 CGAGTCCACT GAAACTACTG TGTGTCCTTA AGAAATTTAA TCCCCTCACT GTACCCAAGG 98261 ||||||||| ||||||||| |||||||||| |||||||||| | |||||||| |||||||||| CGAGTCCACA GAAACTACTA TGTGTCCTTA AGAAATTTAA TTCCCTCACT GTACCCAAGG 602 TTATGGATTA ATTTCTCCCA AGATAAAACG GATTACACCT GTTAAAGAAA TAGCGGTACC 98321 |||||||||| ||||||| || |||||||||| ||||| |||| |||||||||| |||||||||| TTATGGATTA ATTTCTCTCA AGATAAAACG GATTAAACCT GTTAAAGAAA TAGCGGTACC 662 TCAAACTTCT TTAACTTCAA CGAACTGAA- AACAGCAACA AGTCA 98365 |||||||||| |||||||||| |||||| || |||| ||||| ||||| TCAAACTTCT TTAACTTCAA CGAACTTAAG AACAACAACA AGTCA 707 hqPGS_C10HBa0111D09.1+_SGN-E263584- (98109 98365) ******************************************************************************** EST sequence 58 -strand 706 n (File: SGN-E261066-) 1 AAAAAATCTG AGTGTGTCCA TGCTTCTGTT ACCAAGAATC GTTCATCAGC CGAAGTTTCA 61 TCTGACATAA CAGGAACATT CTCATTGATG AACTTCTGCA GACTCAACGT AGTGAGATAG 121 AAGAACATCT TTTGCTGCCA TCTCTTAAAG TCGACTCCAG AAATCTTTGC AGGTTTCTCA 181 GCCGGTGCTA AGGCAGCATG TGAACGATTA TGTGCAACCA TTGTTGTTGC AGCACTTACT 241 GTTCCAGCAT TTGTTTGACT TGAATTAGTC TTTTTTTTCT GTCACAATTG GCAGATAAAT 301 TAAGTATTTA AAATACTAAC AGTAAAGAGC AAATCTTTAC ACAACCTGTT TATGATTTAA 361 CGATAAAGTT TTTATGTTTT TTTAATCGTT AATCGAATGA TTTTAAAAAT TCAAGTAGAG 421 TAGAAAACCA TAAAGGTTTT AATCTCCAGA AACCTCAAAC ACAGAAACTG TATAAATTTT 481 CTTAAGATTG TTACTCTTAT AATAACTTTT ATTTATAAAG TTAATAAACA GAAACAGAAA 541 TAAGATGAAG CAGAAAATAA TATAGAATAC AAGAATTAAT CCGAGTCCAC AGAAACTACT 601 ATGTGTCCTT AAGAAATTTA ATTCCCTCAC TGTACCCAAG GTTATGGATT AATTTCTCTC 661 AAGATAAAAC GGATTAAACC TGTTAAAGAA ATAGCGGTAC CTCAAA Predicted gene structure (within gDNA segment 92143 to 98926): Exon 1 94003 94013 ( 11 n); cDNA 458 468 ( 11 n); score: 0.727 Intron 1 94014 95086 (1073 n); Pd: 0.283 (s: 0), Pa: 0.192 (s: 0) Exon 2 95087 95105 ( 19 n); cDNA 469 487 ( 19 n); score: 0.684 Intron 2 95106 98108 (3003 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.88) Exon 3 98109 98326 ( 218 n); cDNA 488 706 ( 219 n); score: 0.915 MATCH C10HBa0111D09.1+ SGN-E261066- 0.915 248 0.351 C PGS_C10HBa0111D09.1+_SGN-E261066- (94003 94013,95087 95105,98109 98326) Alignment (genomic DNA sequence = upper lines): AAAACACAAG CGTATGTTTT GTTTGATCTC TTGGAATGAA ATCAAAAACA CAATCCCCTT 94062 || ||| || | AACACAGAAA C......... .......... .......... .......... .......... 468 CATAAGCTTG GAATGAAATC AAAAACAAGA AAACAGAATA CACTTGCTCC GTCACAAGAA 94122 .......... .......... .......... .......... .......... .......... 468 CATTCATGTT TGTTGCTTTG GCTCTATAAA AGTACTGTGT ATGTTGGTCC TCTATGCATT 94182 .......... .......... .......... .......... .......... .......... 468 TCTAAGGATA AGATATATGT ACACCAACAT TTTTGGAGTG TTGAAAAAAG GAAGATATTT 94242 .......... .......... .......... .......... .......... .......... 468 CTTTTTTAAT TGACTTTACT TTCATTGGTT AATTTCAAGT TGTAATTTGA ATTTAAACTC 94302 .......... .......... .......... .......... .......... .......... 468 GTAAAATAAA AATTGGTTAT TTATTTACAA GCAAGAATTG GTATGATCTC GGGCCCGTGC 94362 .......... .......... .......... .......... .......... .......... 468 CTTGCACGGG CATTCCACAT CTAGTCTAGT ATACATACAA GTGATAGTAT TACATCTGGA 94422 .......... .......... .......... .......... .......... .......... 468 TTGGGTTTAT CCCTCTAAGA AGTTACTTCT TTCTAGAAAG TTAAATATGT GTTTATTAAT 94482 .......... .......... .......... .......... .......... .......... 468 TTAATTTTAA TTTAATATTT TTTTAAAATA ATATACCTTC TTTATTCGAA ATAGAGAGGT 94542 .......... .......... .......... .......... .......... .......... 468 ATTGAATTTG AGCTTTTGGA TATATATTAT ATTTTACTTT TTATATTTTA AAAATTCTTT 94602 .......... .......... .......... .......... .......... .......... 468 TAAAGATATA TATTGACAAT TTTATAAAAT AAATCTAACC ATCAAAAATA ATAAATATAA 94662 .......... .......... .......... .......... .......... .......... 468 ATTTACTACT AAATCATAAA AGAAAAAATA TGTGTGTGGG AATATTTTCT TAACAAAAAA 94722 .......... .......... .......... .......... .......... .......... 468 TTTAAAAATT GAATCTATAA TTGTATTTTT GATATATCAT ATATCATATA TTTATATAAA 94782 .......... .......... .......... .......... .......... .......... 468 AGATAGCTCT AGGCCCACCT ATATGGCATC ACCACAAGCA ATAATGTCCT TTTAAAATTA 94842 .......... .......... .......... .......... .......... .......... 468 CTTATTTCCA AAACTACCCT TCATATTTCC TTAAAAGATA TGACTTTTAT GAAAAGCTAC 94902 .......... .......... .......... .......... .......... .......... 468 AATTTTAATG AATAGTTGCA ACTTTTATCA AAAGTTATGA CATTAATAAA GAGTTGTGAG 94962 .......... .......... .......... .......... .......... .......... 468 TTTTATCAAA AGTTGTGACT TTAATGAAGA GTTACTACTT TTATCAAAAG TCATGACTTT 95022 .......... .......... .......... .......... .......... .......... 468 TATGAAAAGT TGTGACATTA ATGAAAAATT GCGACTTTAT GAAAAGTTTG TGACTTTTAT 95082 .......... .......... .......... .......... .......... .......... 468 GAAGGTTATG AATTTTCCGA AGGGTTGCAA TTTTTTCAAA TAGTTGTAAC CTTTCTGTTA 95142 ||| ||||||| | || ....TGTATA AATTTTCTTA AGA....... .......... .......... .......... 487 AGACACAATA AACATTTGTT CACACTAACC TTTGTTGTCT ATAAATAGAA GGATTTTCTC 95202 .......... .......... .......... .......... .......... .......... 487 TCATTTTAAA ACAACTAATT TTAATCTCTT CTATTTCCGC AAAATTAAAT ATTTTTGTAC 95262 .......... .......... .......... .......... .......... .......... 487 TTTGCTCCTT TCGAGTGACT TACTAACACC ACTATTTTTT ATCAATAAGT TGGTGAAAAA 95322 .......... .......... .......... .......... .......... .......... 487 ATCTTTCATC GTGAGAGGAT GTAATTCATT AAATCTCTTG TATTGGAGGG AAGTAGTTTT 95382 .......... .......... .......... .......... .......... .......... 487 TTAAAGGGGA TATTGTGTAT TCAGTGAACT CGATTTTTTC CTTTATATTT CATTCTATTC 95442 .......... .......... .......... .......... .......... .......... 487 ATACATATCC TGATATGTTT TTTACACTCA TTAATTTATG TTTATGATAT TAATTGTTGT 95502 .......... .......... .......... .......... .......... .......... 487 TTTTGAGTAC ATGTTTTAAA CTTGGTTTTT TATATTTCTG CAAAGTTATT TTCTCTGGTT 95562 .......... .......... .......... .......... .......... .......... 487 ATAGATAGAA AATATATACA TGTAGTAGGT ATATTTATTG TACGGAAAAT AATTATTGTA 95622 .......... .......... .......... .......... .......... .......... 487 AAAGTGCTAT GTATAAGCTT ACATATTATA TTTTCTTACG TAAATATGAA ATTTCTCACT 95682 .......... .......... .......... .......... .......... .......... 487 TATCAATTGA AGAAATTCAT TATACAAGTT CAAAAGTTAT AATTGCTTTC ATGTGCAAGC 95742 .......... .......... .......... .......... .......... .......... 487 GTAATTTCTT TTTTGAAAAT GTTAACAAAT TTTTGGATTT TCTTCTTATC CATATATCAC 95802 .......... .......... .......... .......... .......... .......... 487 AATTGTATAA TTTTTGTAAT TTAAATGTTT CTTTTTTATT ACGAAACACC TTTGTATATA 95862 .......... .......... .......... .......... .......... .......... 487 TATTCATATG TTCTTCTTTA TTTTTCTTTC AATGTTGATT GAAGAACCAA TGATTGATTA 95922 .......... .......... .......... .......... .......... .......... 487 TATCGTGAAT AAGTCATTCA TTAGAGGTTC TTGACTTATG TGATATTGAT AAAATAATCA 95982 .......... .......... .......... .......... .......... .......... 487 AATTCATATT GGAGTATTGC CAATATTTTT TAAGAACCTA TTTTCTATTA TTTTTAATGT 96042 .......... .......... .......... .......... .......... .......... 487 ATCGATATTA GTAAAAATTA TTTGCAAGTT CAATGCAATT ATTATTTAGG ACTGGGTAAA 96102 .......... .......... .......... .......... .......... .......... 487 GCTCAAAAAA TTTACCTAGT GTGTATATAT ATATATATAT ATATATATAT ATATATGAAA 96162 .......... .......... .......... .......... .......... .......... 487 AGAAATAGAA GAAGAAATAT CTATACAACT AATTATAAAA TATAATATAA GAAGTAGAAA 96222 .......... .......... .......... .......... .......... .......... 487 GAAAAGGATC AGAAGAAGAA CAAGAAACGT ACAACACTAA AACCCTAACA GAGCTCCAAA 96282 .......... .......... .......... .......... .......... .......... 487 TATTGCAAAA TAGAACAAAA TAACTGAACA ACTCTTCTTC AATCCCCTAA AAAAAGGATG 96342 .......... .......... .......... .......... .......... .......... 487 CACTACTTCA CATCTCTTCA TCATGCTCCC ATGGTGTCAC GATCCAAAAT AGATGTGATG 96402 .......... .......... .......... .......... .......... .......... 487 ACACTCGTCT TATCTTATCA AGACAAGTCA GCCTAACATC CTACTAATAT AATGAATGTG 96462 .......... .......... .......... .......... .......... .......... 487 GAAGTAAAAC GACAGTAAAA GTCTAATACT AGCCTCTAAA GTATTGCAAT CTAATCAAAA 96522 .......... .......... .......... .......... .......... .......... 487 GAAAAATACA AGTCTCATAT GACATTGTTT CTAGAGTAGA ACAAGATCAT AAATAGCAGT 96582 .......... .......... .......... .......... .......... .......... 487 AAGAAGGTCC ACTGAAATGA CAAGCAACGG CCTCATAAAT CTCCATAAGA AGCCTCATAC 96642 .......... .......... .......... .......... .......... .......... 487 AAGGTAAAGA GAAAATATCA CAAAGGTCCA AGCTAATAAC CTACAAACAA AATAGTAGAA 96702 .......... .......... .......... .......... .......... .......... 487 GCAAGGGGTG AGTATCAATC ACACGGTACT CAGCAAGTAA ACCTCTAAAC ACAATCTAAG 96762 .......... .......... .......... .......... .......... .......... 487 AGGATAAAAT ACGGGTACTC CTTACACCCC AACCGAATCT CCACAACAAC AACGTGCATA 96822 .......... .......... .......... .......... .......... .......... 487 AAATAAGTTC AACCTAACAG TGCACAATTT ACAAGCACAT ATCTCAACAA TATCATTCTA 96882 .......... .......... .......... .......... .......... .......... 487 ACAATCACAT ATTCTCAACA ATAAGCTCAA TAATATTCAT CAATTACAAC ATCCACAAAT 96942 .......... .......... .......... .......... .......... .......... 487 AATATCAGCA ACACACAAGA TCAAGTTCAT AAAATAAAGG TAACCAAAGG ATATCATGAG 97002 .......... .......... .......... .......... .......... .......... 487 ATGCAATGTA ATATGACACG ATGAAATGAT ATGTCTCAAA ATACCAAGTA CTCTCTCAAC 97062 .......... .......... .......... .......... .......... .......... 487 CGTTTATACA TGATACTCCT TGAAAATACA TAGAGAGTTC ATGACCTATG GGGGGCTTCG 97122 .......... .......... .......... .......... .......... .......... 487 CGAGGTACAT GTACCGAAAC AGACGATCTC CATGTTTCTG TGCGGACGAT CTCAATGCAC 97182 .......... .......... .......... .......... .......... .......... 487 TATCATAAAA TTTAACAATC TCAATCATGG ACGATCTCGA TGTGCCCAAC TTATAATCAT 97242 .......... .......... .......... .......... .......... .......... 487 AATCAATTTC TCGCACGGAC GGTCTCCATG TGCCCAAATT ATAATCATAC TCGATCTTAA 97302 .......... .......... .......... .......... .......... .......... 487 CACGGACGAT CTACATGTGT TAGACCTTTA CTCATACCCA ATCTCATGTC AATGCATGTA 97362 .......... .......... .......... .......... .......... .......... 487 CACAATATGA TATCAAATAA AGAGGATGAT GCGATGTCTC AATAAATAAA ATGTCACTAT 97422 .......... .......... .......... .......... .......... .......... 487 GACATATAAT CGCCTCAATA ATCATAATTA TACGGGTTCA TTAAAGAACA CAATCACACA 97482 .......... .......... .......... .......... .......... .......... 487 TAATAAATCA AATCAATATA ATATCAGTTA ATTTCCATAT GCCCTGGCCT TCTCGAATTA 97542 .......... .......... .......... .......... .......... .......... 487 CAATCCACAC TCTATAGTAA TAAACTTTGC GTTTATAACA CCGGTACTCG TACCTTTCTC 97602 .......... .......... .......... .......... .......... .......... 487 AACTCATCAC ACACAAACAA TTAATCACAT TGTCTTTTAT TACCCCTTTT CATCATCAAA 97662 .......... .......... .......... .......... .......... .......... 487 ATTAATCAAG GTGGACAAGT CAATCCTTCA CCAAGTCTCA TTACTCCCAA ACACATACCA 97722 .......... .......... .......... .......... .......... .......... 487 CAAGGAAATA CACAAATTTC ATACACTTAA CAAGGGTTTA GAAATCCACT TGCATTAATC 97782 .......... .......... .......... .......... .......... .......... 487 GATCAAGAGT TCACTTTTGG AACTTGAGTT TTCCCTTTTC GTTAAACTTT CAAATCAAAG 97842 .......... .......... .......... .......... .......... .......... 487 CAATTTATTC AATTAAATTA CCGAAATAAG ATTTCAAAAT TAATGACACC CATACTAGGT 97902 .......... .......... .......... .......... .......... .......... 487 GTTTAACTTA CCCCCAAACT CAAATTTAGA ATCAATTTCC TTATTTTGTT AACATGTGAA 97962 .......... .......... .......... .......... .......... .......... 487 CTCTCATATT TTCTAATTTT CAAGTCTAGG GTGTAGTCTC AATATCTCCA AATAACATAA 98022 .......... .......... .......... .......... .......... .......... 487 TCTTAATGGT ATCACATAAT ACACTTCACT TAATATTTAA TTATCAATCT CAATATAACA 98082 .......... .......... .......... .......... .......... .......... 487 AAACTTGAAT CTAATGTGAT TTCACCCTGT TATTCTTACA ATAACTTGTA TTTATGAAGT 98142 ||| || ||||| | ||||||| || ||||| |||| .......... .......... ......TTGT TACTCTTATA ATAACTTTTA TTTATAAAGT 521 TAATGAACAG AAACAGAAAC AAGATGAAGC AGAAAA-AAT TTAAAATAGA GGAATTAATC 98201 |||| ||||| ||||||||| |||||||||| |||||| ||| || |||| | ||||||||| TAATAAACAG AAACAGAAAT AAGATGAAGC AGAAAATAAT ATAGAATACA AGAATTAATC 581 CGAGTCCACT GAAACTACTG TGTGTCCTTA AGAAATTTAA TCCCCTCACT GTACCCAAGG 98261 ||||||||| ||||||||| |||||||||| |||||||||| | |||||||| |||||||||| CGAGTCCACA GAAACTACTA TGTGTCCTTA AGAAATTTAA TTCCCTCACT GTACCCAAGG 641 TTATGGATTA ATTTCTCCCA AGATAAAACG GATTACACCT GTTAAAGAAA TAGCGGTACC 98321 |||||||||| ||||||| || |||||||||| ||||| |||| |||||||||| |||||||||| TTATGGATTA ATTTCTCTCA AGATAAAACG GATTAAACCT GTTAAAGAAA TAGCGGTACC 701 TCAAA 98326 ||||| TCAAA 706 hqPGS_C10HBa0111D09.1+_SGN-E261066- (98109 98326) ******************************************************************************** EST sequence 91 -strand 635 n (File: SGN-E276669-) 1 CAGGAACATT CTCATTGATG AACTTCTGCA GACTCAACGT AGTGAGATAG AAGAACATCT 61 TTTGCTGCCA TCTCTTAAAG TCGACTCCAG AAAACTTTGC AGGTTTCTCA GCCGGTGCTA 121 AGGCAGCATG TGAACGATTA TGTGCAACCA TTGTTGTTGC AGCACTTACT GTTCCAGCAT 181 TTGTTTGACT TGAATTAGTC TTTTTTTTCT GTCACAATTG GCAGATAAAT TAAGTATTTA 241 AAATACTAAC AGTAAAGAGC AAATCTTTAC ACAACCTGTT TCTGATTTAA CGATAAAGTT 301 TTTATGTTTT TTTAATCGTT AATCGAATGA TTTTAAAAAT TCAAGTAGAG TAGAAAACCA 361 TAAAGGTTTT AATCTCCAGA AACCTCAAAC ACAGAAACTG TATAAATTTT CTTAAGATTG 421 TTACTCTTAT AATAACTTTT ATTTATAAAG TTAATAAACA GAAACAGAAA TAAGATGAAG 481 CAGAAAATAA TATAGAATAC AAGAATTAAT CCGAGTCCAC AGAAACTACT ATGTGTCCTT 541 AAGAAATTTA ATTCCCTCAC TGTACCCAAG GTTATGGATT AATTTCTCTC AAGATAAAAC 601 GGATTAAACC TGTTAAAGAA ATAGCGGTAC CTCAA Predicted gene structure (within gDNA segment 92843 to 98925): Exon 1 94003 94013 ( 11 n); cDNA 388 398 ( 11 n); score: 0.727 Intron 1 94014 95086 (1073 n); Pd: 0.283 (s: 0), Pa: 0.192 (s: 0) Exon 2 95087 95105 ( 19 n); cDNA 399 417 ( 19 n); score: 0.684 Intron 2 95106 98108 (3003 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.88) Exon 3 98109 98325 ( 217 n); cDNA 418 635 ( 218 n); score: 0.915 MATCH C10HBa0111D09.1+ SGN-E276669- 0.915 247 0.389 C PGS_C10HBa0111D09.1+_SGN-E276669- (94003 94013,95087 95105,98109 98325) Alignment (genomic DNA sequence = upper lines): AAAACACAAG CGTATGTTTT GTTTGATCTC TTGGAATGAA ATCAAAAACA CAATCCCCTT 94062 || ||| || | AACACAGAAA C......... .......... .......... .......... .......... 398 CATAAGCTTG GAATGAAATC AAAAACAAGA AAACAGAATA CACTTGCTCC GTCACAAGAA 94122 .......... .......... .......... .......... .......... .......... 398 CATTCATGTT TGTTGCTTTG GCTCTATAAA AGTACTGTGT ATGTTGGTCC TCTATGCATT 94182 .......... .......... .......... .......... .......... .......... 398 TCTAAGGATA AGATATATGT ACACCAACAT TTTTGGAGTG TTGAAAAAAG GAAGATATTT 94242 .......... .......... .......... .......... .......... .......... 398 CTTTTTTAAT TGACTTTACT TTCATTGGTT AATTTCAAGT TGTAATTTGA ATTTAAACTC 94302 .......... .......... .......... .......... .......... .......... 398 GTAAAATAAA AATTGGTTAT TTATTTACAA GCAAGAATTG GTATGATCTC GGGCCCGTGC 94362 .......... .......... .......... .......... .......... .......... 398 CTTGCACGGG CATTCCACAT CTAGTCTAGT ATACATACAA GTGATAGTAT TACATCTGGA 94422 .......... .......... .......... .......... .......... .......... 398 TTGGGTTTAT CCCTCTAAGA AGTTACTTCT TTCTAGAAAG TTAAATATGT GTTTATTAAT 94482 .......... .......... .......... .......... .......... .......... 398 TTAATTTTAA TTTAATATTT TTTTAAAATA ATATACCTTC TTTATTCGAA ATAGAGAGGT 94542 .......... .......... .......... .......... .......... .......... 398 ATTGAATTTG AGCTTTTGGA TATATATTAT ATTTTACTTT TTATATTTTA AAAATTCTTT 94602 .......... .......... .......... .......... .......... .......... 398 TAAAGATATA TATTGACAAT TTTATAAAAT AAATCTAACC ATCAAAAATA ATAAATATAA 94662 .......... .......... .......... .......... .......... .......... 398 ATTTACTACT AAATCATAAA AGAAAAAATA TGTGTGTGGG AATATTTTCT TAACAAAAAA 94722 .......... .......... .......... .......... .......... .......... 398 TTTAAAAATT GAATCTATAA TTGTATTTTT GATATATCAT ATATCATATA TTTATATAAA 94782 .......... .......... .......... .......... .......... .......... 398 AGATAGCTCT AGGCCCACCT ATATGGCATC ACCACAAGCA ATAATGTCCT TTTAAAATTA 94842 .......... .......... .......... .......... .......... .......... 398 CTTATTTCCA AAACTACCCT TCATATTTCC TTAAAAGATA TGACTTTTAT GAAAAGCTAC 94902 .......... .......... .......... .......... .......... .......... 398 AATTTTAATG AATAGTTGCA ACTTTTATCA AAAGTTATGA CATTAATAAA GAGTTGTGAG 94962 .......... .......... .......... .......... .......... .......... 398 TTTTATCAAA AGTTGTGACT TTAATGAAGA GTTACTACTT TTATCAAAAG TCATGACTTT 95022 .......... .......... .......... .......... .......... .......... 398 TATGAAAAGT TGTGACATTA ATGAAAAATT GCGACTTTAT GAAAAGTTTG TGACTTTTAT 95082 .......... .......... .......... .......... .......... .......... 398 GAAGGTTATG AATTTTCCGA AGGGTTGCAA TTTTTTCAAA TAGTTGTAAC CTTTCTGTTA 95142 ||| ||||||| | || ....TGTATA AATTTTCTTA AGA....... .......... .......... .......... 417 AGACACAATA AACATTTGTT CACACTAACC TTTGTTGTCT ATAAATAGAA GGATTTTCTC 95202 .......... .......... .......... .......... .......... .......... 417 TCATTTTAAA ACAACTAATT TTAATCTCTT CTATTTCCGC AAAATTAAAT ATTTTTGTAC 95262 .......... .......... .......... .......... .......... .......... 417 TTTGCTCCTT TCGAGTGACT TACTAACACC ACTATTTTTT ATCAATAAGT TGGTGAAAAA 95322 .......... .......... .......... .......... .......... .......... 417 ATCTTTCATC GTGAGAGGAT GTAATTCATT AAATCTCTTG TATTGGAGGG AAGTAGTTTT 95382 .......... .......... .......... .......... .......... .......... 417 TTAAAGGGGA TATTGTGTAT TCAGTGAACT CGATTTTTTC CTTTATATTT CATTCTATTC 95442 .......... .......... .......... .......... .......... .......... 417 ATACATATCC TGATATGTTT TTTACACTCA TTAATTTATG TTTATGATAT TAATTGTTGT 95502 .......... .......... .......... .......... .......... .......... 417 TTTTGAGTAC ATGTTTTAAA CTTGGTTTTT TATATTTCTG CAAAGTTATT TTCTCTGGTT 95562 .......... .......... .......... .......... .......... .......... 417 ATAGATAGAA AATATATACA TGTAGTAGGT ATATTTATTG TACGGAAAAT AATTATTGTA 95622 .......... .......... .......... .......... .......... .......... 417 AAAGTGCTAT GTATAAGCTT ACATATTATA TTTTCTTACG TAAATATGAA ATTTCTCACT 95682 .......... .......... .......... .......... .......... .......... 417 TATCAATTGA AGAAATTCAT TATACAAGTT CAAAAGTTAT AATTGCTTTC ATGTGCAAGC 95742 .......... .......... .......... .......... .......... .......... 417 GTAATTTCTT TTTTGAAAAT GTTAACAAAT TTTTGGATTT TCTTCTTATC CATATATCAC 95802 .......... .......... .......... .......... .......... .......... 417 AATTGTATAA TTTTTGTAAT TTAAATGTTT CTTTTTTATT ACGAAACACC TTTGTATATA 95862 .......... .......... .......... .......... .......... .......... 417 TATTCATATG TTCTTCTTTA TTTTTCTTTC AATGTTGATT GAAGAACCAA TGATTGATTA 95922 .......... .......... .......... .......... .......... .......... 417 TATCGTGAAT AAGTCATTCA TTAGAGGTTC TTGACTTATG TGATATTGAT AAAATAATCA 95982 .......... .......... .......... .......... .......... .......... 417 AATTCATATT GGAGTATTGC CAATATTTTT TAAGAACCTA TTTTCTATTA TTTTTAATGT 96042 .......... .......... .......... .......... .......... .......... 417 ATCGATATTA GTAAAAATTA TTTGCAAGTT CAATGCAATT ATTATTTAGG ACTGGGTAAA 96102 .......... .......... .......... .......... .......... .......... 417 GCTCAAAAAA TTTACCTAGT GTGTATATAT ATATATATAT ATATATATAT ATATATGAAA 96162 .......... .......... .......... .......... .......... .......... 417 AGAAATAGAA GAAGAAATAT CTATACAACT AATTATAAAA TATAATATAA GAAGTAGAAA 96222 .......... .......... .......... .......... .......... .......... 417 GAAAAGGATC AGAAGAAGAA CAAGAAACGT ACAACACTAA AACCCTAACA GAGCTCCAAA 96282 .......... .......... .......... .......... .......... .......... 417 TATTGCAAAA TAGAACAAAA TAACTGAACA ACTCTTCTTC AATCCCCTAA AAAAAGGATG 96342 .......... .......... .......... .......... .......... .......... 417 CACTACTTCA CATCTCTTCA TCATGCTCCC ATGGTGTCAC GATCCAAAAT AGATGTGATG 96402 .......... .......... .......... .......... .......... .......... 417 ACACTCGTCT TATCTTATCA AGACAAGTCA GCCTAACATC CTACTAATAT AATGAATGTG 96462 .......... .......... .......... .......... .......... .......... 417 GAAGTAAAAC GACAGTAAAA GTCTAATACT AGCCTCTAAA GTATTGCAAT CTAATCAAAA 96522 .......... .......... .......... .......... .......... .......... 417 GAAAAATACA AGTCTCATAT GACATTGTTT CTAGAGTAGA ACAAGATCAT AAATAGCAGT 96582 .......... .......... .......... .......... .......... .......... 417 AAGAAGGTCC ACTGAAATGA CAAGCAACGG CCTCATAAAT CTCCATAAGA AGCCTCATAC 96642 .......... .......... .......... .......... .......... .......... 417 AAGGTAAAGA GAAAATATCA CAAAGGTCCA AGCTAATAAC CTACAAACAA AATAGTAGAA 96702 .......... .......... .......... .......... .......... .......... 417 GCAAGGGGTG AGTATCAATC ACACGGTACT CAGCAAGTAA ACCTCTAAAC ACAATCTAAG 96762 .......... .......... .......... .......... .......... .......... 417 AGGATAAAAT ACGGGTACTC CTTACACCCC AACCGAATCT CCACAACAAC AACGTGCATA 96822 .......... .......... .......... .......... .......... .......... 417 AAATAAGTTC AACCTAACAG TGCACAATTT ACAAGCACAT ATCTCAACAA TATCATTCTA 96882 .......... .......... .......... .......... .......... .......... 417 ACAATCACAT ATTCTCAACA ATAAGCTCAA TAATATTCAT CAATTACAAC ATCCACAAAT 96942 .......... .......... .......... .......... .......... .......... 417 AATATCAGCA ACACACAAGA TCAAGTTCAT AAAATAAAGG TAACCAAAGG ATATCATGAG 97002 .......... .......... .......... .......... .......... .......... 417 ATGCAATGTA ATATGACACG ATGAAATGAT ATGTCTCAAA ATACCAAGTA CTCTCTCAAC 97062 .......... .......... .......... .......... .......... .......... 417 CGTTTATACA TGATACTCCT TGAAAATACA TAGAGAGTTC ATGACCTATG GGGGGCTTCG 97122 .......... .......... .......... .......... .......... .......... 417 CGAGGTACAT GTACCGAAAC AGACGATCTC CATGTTTCTG TGCGGACGAT CTCAATGCAC 97182 .......... .......... .......... .......... .......... .......... 417 TATCATAAAA TTTAACAATC TCAATCATGG ACGATCTCGA TGTGCCCAAC TTATAATCAT 97242 .......... .......... .......... .......... .......... .......... 417 AATCAATTTC TCGCACGGAC GGTCTCCATG TGCCCAAATT ATAATCATAC TCGATCTTAA 97302 .......... .......... .......... .......... .......... .......... 417 CACGGACGAT CTACATGTGT TAGACCTTTA CTCATACCCA ATCTCATGTC AATGCATGTA 97362 .......... .......... .......... .......... .......... .......... 417 CACAATATGA TATCAAATAA AGAGGATGAT GCGATGTCTC AATAAATAAA ATGTCACTAT 97422 .......... .......... .......... .......... .......... .......... 417 GACATATAAT CGCCTCAATA ATCATAATTA TACGGGTTCA TTAAAGAACA CAATCACACA 97482 .......... .......... .......... .......... .......... .......... 417 TAATAAATCA AATCAATATA ATATCAGTTA ATTTCCATAT GCCCTGGCCT TCTCGAATTA 97542 .......... .......... .......... .......... .......... .......... 417 CAATCCACAC TCTATAGTAA TAAACTTTGC GTTTATAACA CCGGTACTCG TACCTTTCTC 97602 .......... .......... .......... .......... .......... .......... 417 AACTCATCAC ACACAAACAA TTAATCACAT TGTCTTTTAT TACCCCTTTT CATCATCAAA 97662 .......... .......... .......... .......... .......... .......... 417 ATTAATCAAG GTGGACAAGT CAATCCTTCA CCAAGTCTCA TTACTCCCAA ACACATACCA 97722 .......... .......... .......... .......... .......... .......... 417 CAAGGAAATA CACAAATTTC ATACACTTAA CAAGGGTTTA GAAATCCACT TGCATTAATC 97782 .......... .......... .......... .......... .......... .......... 417 GATCAAGAGT TCACTTTTGG AACTTGAGTT TTCCCTTTTC GTTAAACTTT CAAATCAAAG 97842 .......... .......... .......... .......... .......... .......... 417 CAATTTATTC AATTAAATTA CCGAAATAAG ATTTCAAAAT TAATGACACC CATACTAGGT 97902 .......... .......... .......... .......... .......... .......... 417 GTTTAACTTA CCCCCAAACT CAAATTTAGA ATCAATTTCC TTATTTTGTT AACATGTGAA 97962 .......... .......... .......... .......... .......... .......... 417 CTCTCATATT TTCTAATTTT CAAGTCTAGG GTGTAGTCTC AATATCTCCA AATAACATAA 98022 .......... .......... .......... .......... .......... .......... 417 TCTTAATGGT ATCACATAAT ACACTTCACT TAATATTTAA TTATCAATCT CAATATAACA 98082 .......... .......... .......... .......... .......... .......... 417 AAACTTGAAT CTAATGTGAT TTCACCCTGT TATTCTTACA ATAACTTGTA TTTATGAAGT 98142 ||| || ||||| | ||||||| || ||||| |||| .......... .......... ......TTGT TACTCTTATA ATAACTTTTA TTTATAAAGT 451 TAATGAACAG AAACAGAAAC AAGATGAAGC AGAAAA-AAT TTAAAATAGA GGAATTAATC 98201 |||| ||||| ||||||||| |||||||||| |||||| ||| || |||| | ||||||||| TAATAAACAG AAACAGAAAT AAGATGAAGC AGAAAATAAT ATAGAATACA AGAATTAATC 511 CGAGTCCACT GAAACTACTG TGTGTCCTTA AGAAATTTAA TCCCCTCACT GTACCCAAGG 98261 ||||||||| ||||||||| |||||||||| |||||||||| | |||||||| |||||||||| CGAGTCCACA GAAACTACTA TGTGTCCTTA AGAAATTTAA TTCCCTCACT GTACCCAAGG 571 TTATGGATTA ATTTCTCCCA AGATAAAACG GATTACACCT GTTAAAGAAA TAGCGGTACC 98321 |||||||||| ||||||| || |||||||||| ||||| |||| |||||||||| |||||||||| TTATGGATTA ATTTCTCTCA AGATAAAACG GATTAAACCT GTTAAAGAAA TAGCGGTACC 631 TCAA 98325 |||| TCAA 635 hqPGS_C10HBa0111D09.1+_SGN-E276669- (98109 98325) ******************************************************************************** EST sequence 70 -strand 514 n (File: SGN-E255327-) 1 TAAAGTTTTT ATGTTTTTTT AATCGTTAAT CGAATGATTT TAAAAATTCA AGTAGAGTAG 61 AAAACCATAA AGGTTTTAAT CTCCAGAAAC CTCAAACACA GAAACTGTAT AAATTTTCTT 121 AAGATTGTTA CTCTTATAAT AACTTTTATT TATAAAGTTA ATAAACAGAA ACAGAAATAA 181 GATGAAGCAG AAAATAATAT AGAATACAAG AATTAATCCG AGTCCACAGA AACTACTATG 241 TGTCCTTAAG AAATTTAATT CCCTCACTGT ACCCAAGGTT ATGGATTAAT TTCTCTCAAG 301 ATAAAACGGA TTAAACCTGT TAAAGAAATA GCGGTACCTC AAACTTCTTT AACTTCAACG 361 AACTTAAGAA CAACAACAAG TCACACAGAC TCAGTCGATC GACACTTTGA TTTTATTTGA 421 GAGAAAAATA AATGCAGAGA AAGAAAAATT TTCAGTGTTT CAAAAATCAA AATTTGACTT 481 CCTTTTATAG CCATTTTCAG CAAGGAACAT GTCC Predicted gene structure (within gDNA segment 95773 to 99106): Exon 1 98110 98496 ( 387 n); cDNA 126 513 ( 388 n); score: 0.930 MATCH C10HBa0111D09.1+ SGN-E255327- 0.930 387 0.753 C PGS_C10HBa0111D09.1+_SGN-E255327- (98110 98496) Alignment (genomic DNA sequence = upper lines): TGTTATTCTT ACAATAACTT GTATTTATGA AGTTAATGAA CAGAAACAGA AACAAGATGA 98169 ||||| |||| | |||||||| ||||||| | ||||||| || |||||||||| || ||||||| TGTTACTCTT ATAATAACTT TTATTTATAA AGTTAATAAA CAGAAACAGA AATAAGATGA 185 AGCAGAAAA- AATTTAAAAT AGAGGAATTA ATCCGAGTCC ACTGAAACTA CTGTGTGTCC 98228 ||||||||| ||| || ||| | | |||||| |||||||||| || ||||||| || ||||||| AGCAGAAAAT AATATAGAAT ACAAGAATTA ATCCGAGTCC ACAGAAACTA CTATGTGTCC 245 TTAAGAAATT TAATCCCCTC ACTGTACCCA AGGTTATGGA TTAATTTCTC CCAAGATAAA 98288 |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| ||||||||| TTAAGAAATT TAATTCCCTC ACTGTACCCA AGGTTATGGA TTAATTTCTC TCAAGATAAA 305 ACGGATTACA CCTGTTAAAG AAATAGCGGT ACCTCAAACT TCTTTAACTT CAACGAACTG 98348 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ACGGATTAAA CCTGTTAAAG AAATAGCGGT ACCTCAAACT TCTTTAACTT CAACGAACTT 365 AA-AACAGCA ACAAGTCACA CAGACTCAGT CGATCGACAC TTTGATTTTA TTTGAGAGAA 98407 || |||| || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAACAACA ACAAGTCACA CAGACTCAGT CGATCGACAC TTTGATTTTA TTTGAGAGAA 425 AAATAAATGC AGAGAAAGAA AAAATCTTCA GTGATTAAAA AATCAAAAAT TGACTTCCTT 98467 |||||||||| |||||||| | ||||| |||| ||| || ||| |||||||| | |||||||||| AAATAAATGC AGAGAAAG-A AAAATTTTCA GTGTTTCAAA AATCAAAATT TGACTTCCTT 484 TTATAGCCAT TTTCAGCAAG GAACATGTC 98496 |||||||||| |||||||||| ||||||||| TTATAGCCAT TTTCAGCAAG GAACATGTC 513 hqPGS_C10HBa0111D09.1+_SGN-E255327- (98110 98496) ******************************************************************************** EST sequence 108 -strand 329 n (File: SGN-E258205-) 1 AGATTGTTAC TCTTATAATA CCTTTTATTT ATAAAGTTAA TAAACAGAAC CAGAAATAAG 61 ATGAAGCAGA AAATAATATA GAATACAAGA ATTAATCCGA GTCCACAGAA ACTACTATGT 121 GTCCTTAAGA AATTTAATTC CCTCACTGTA CCCAAGGTTA TGGATTAATT TCTCTCAAGA 181 TAAAACGGAT TAAACCTGTT AAAGAAATAG CGGTACCTCA AACTTCTTTA ACTTCAACGA 241 ACTTAAGAAC AACAACAAGT CACACAGACT CAGTCGATCG ACACTTTGAT TTTATTTGAG 301 AGAAAAATAA ATGCAGAGAA AGAAAAATT Predicted gene structure (within gDNA segment 96983 to 99050): Exon 1 98110 98430 ( 321 n); cDNA 5 327 ( 323 n); score: 0.925 MATCH C10HBa0111D09.1+ SGN-E258205- 0.925 321 0.976 C PGS_C10HBa0111D09.1+_SGN-E258205- (98110 98430) Alignment (genomic DNA sequence = upper lines): TGTTATTCTT ACAATAACTT GTATTTATGA AGTTAATGAA CAGAAACAGA AACAAGATGA 98169 ||||| |||| | |||| ||| ||||||| | ||||||| || ||||| |||| || ||||||| TGTTACTCTT ATAATACCTT TTATTTATAA AGTTAATAAA CAGAACCAGA AATAAGATGA 64 AGCAGAAAA- AATTTAAAAT AGAGGAATTA ATCCGAGTCC ACTGAAACTA CTGTGTGTCC 98228 ||||||||| ||| || ||| | | |||||| |||||||||| || ||||||| || ||||||| AGCAGAAAAT AATATAGAAT ACAAGAATTA ATCCGAGTCC ACAGAAACTA CTATGTGTCC 124 TTAAGAAATT TAATCCCCTC ACTGTACCCA AGGTTATGGA TTAATTTCTC CCAAGATAAA 98288 |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| ||||||||| TTAAGAAATT TAATTCCCTC ACTGTACCCA AGGTTATGGA TTAATTTCTC TCAAGATAAA 184 ACGGATTACA CCTGTTAAAG AAATAGCGGT ACCTCAAACT TCTTTAACTT CAACGAACTG 98348 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ACGGATTAAA CCTGTTAAAG AAATAGCGGT ACCTCAAACT TCTTTAACTT CAACGAACTT 244 AA-AACAGCA ACAAGTCACA CAGACTCAGT CGATCGACAC TTTGATTTTA TTTGAGAGAA 98407 || |||| || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAACAACA ACAAGTCACA CAGACTCAGT CGATCGACAC TTTGATTTTA TTTGAGAGAA 304 AAATAAATGC AGAGAAAGAA AAA 98430 |||||||||| |||||||||| ||| AAATAAATGC AGAGAAAGAA AAA 327 hqPGS_C10HBa0111D09.1+_SGN-E258205- (98110 98430) ******************************************************************************** EST sequence 39 -strand 231 n (File: SGN-E228046-) 1 TTTTAAAAAT TCAAGCAGAA TAAAAAACCA ACCATAAAGG TTTTAATCTC CAAAAACCTC 61 AAATACAAAA ACTGTTAAAT TTCTTAAGAT TGTTATAAAA TTGTTATTCT TACAATAACT 121 TGTATTTATG AAGTTAATGA ATAGAAATAG AAACAAGATG AAGCAGAAAA AATTTAAAAC 181 AGAAGAATTA ATCCGAGTCC ACAGAAACTA CTGTGTGTCC TTAAGAAATT T Predicted gene structure (within gDNA segment 96490 to 98839): Exon 1 98110 98239 ( 130 n); cDNA 102 231 ( 130 n); score: 0.962 MATCH C10HBa0111D09.1+ SGN-E228046- 0.962 130 0.563 C PGS_C10HBa0111D09.1+_SGN-E228046- (98110 98239) Alignment (genomic DNA sequence = upper lines): TGTTATTCTT ACAATAACTT GTATTTATGA AGTTAATGAA CAGAAACAGA AACAAGATGA 98169 |||||||||| |||||||||| |||||||||| |||||||||| ||||| ||| |||||||||| TGTTATTCTT ACAATAACTT GTATTTATGA AGTTAATGAA TAGAAATAGA AACAAGATGA 161 AGCAGAAAAA ATTTAAAATA GAGGAATTAA TCCGAGTCCA CTGAAACTAC TGTGTGTCCT 98229 |||||||||| |||||||| | || ||||||| |||||||||| | |||||||| |||||||||| AGCAGAAAAA ATTTAAAACA GAAGAATTAA TCCGAGTCCA CAGAAACTAC TGTGTGTCCT 221 TAAGAAATTT 98239 |||||||||| TAAGAAATTT 231 hqPGS_C10HBa0111D09.1+_SGN-E228046- (98110 98239) ******************************************************************************** EST sequence 64 -strand 227 n (File: SGN-E261310-) 1 AATTTCTCTC AAGATAAAAC GGATTAAACC TGTTAAAGAA ATAGCGGTAC CTCAAACTTC 61 TTTAACTTCA ACGAACTTAA GAACAACAAC AAGTCACACA GACTCAGTCG ATCGACACTT 121 TGATTTTATT TGAGAGAAAA ATAAATGCAG AGAAAGAAAA ATTTTCAGTG TTTAAAAAAT 181 CAAAATTTGA CTTCCTTTTA TAGCCATTTT CAGCAAGGAA CATGTCC Predicted gene structure (within gDNA segment 97580 to 99106): Exon 1 98271 98496 ( 226 n); cDNA 1 226 ( 226 n); score: 0.954 MATCH C10HBa0111D09.1+ SGN-E261310- 0.954 226 0.996 C PGS_C10HBa0111D09.1+_SGN-E261310- (98271 98496) Alignment (genomic DNA sequence = upper lines): AATTTCTCCC AAGATAAAAC GGATTACACC TGTTAAAGAA ATAGCGGTAC CTCAAACTTC 98330 |||||||| | |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| AATTTCTCTC AAGATAAAAC GGATTAAACC TGTTAAAGAA ATAGCGGTAC CTCAAACTTC 60 TTTAACTTCA ACGAACTGAA -AACAGCAAC AAGTCACACA GACTCAGTCG ATCGACACTT 98389 |||||||||| ||||||| || |||| |||| |||||||||| |||||||||| |||||||||| TTTAACTTCA ACGAACTTAA GAACAACAAC AAGTCACACA GACTCAGTCG ATCGACACTT 120 TGATTTTATT TGAGAGAAAA ATAAATGCAG AGAAAGAAAA AATCTTCAGT GATTAAAAAA 98449 |||||||||| |||||||||| |||||||||| |||||| ||| ||| |||||| | |||||||| TGATTTTATT TGAGAGAAAA ATAAATGCAG AGAAAG-AAA AATTTTCAGT GTTTAAAAAA 179 TCAAAAATTG ACTTCCTTTT ATAGCCATTT TCAGCAAGGA ACATGTC 98496 |||||| ||| |||||||||| |||||||||| |||||||||| ||||||| TCAAAATTTG ACTTCCTTTT ATAGCCATTT TCAGCAAGGA ACATGTC 226 hqPGS_C10HBa0111D09.1+_SGN-E261310- (98271 98496) ******************************************************************************** EST sequence 25 +strand 757 n (File: SGN-E542858+) 1 TTTTTTTTTT AATTAAATAA ATTTATTAAG GGAAAACTTA ATATTTCTAA CATAGGCATT 61 AAATAAATTT ATACATTCAG CACAGATCAT GGATTATGAC CTGCAATTCT TGAACTTGGG 121 TGACGACAGT CTTATTGTCT ATCATCTTAT AGTCCAAAAA TTTTACCACA ATGAATTTCT 181 TCATTCCGGC ATCTTCTGTT TTGTACTTCT TTTCTAAAGC ATCCAAGAGT TCTTTGAGGT 241 TTTGGCATTG TTGTTCATCT TGCAGACCAC TCAAAATATA ATTTTTACAC AAAAAATCTG 301 AGTGTGTCCA TGCTTCTGTT ACCAAGAATC GTTCATCAGC CGGAGTTTCA TCTGATAAAC 361 AGGAACATTC TCATTAATGA ACTTCTGCAG ACTCAACGTA GTGAGATAGA AGAACATCTT 421 TTGCTGCCAT CTCTCAAAGT CGACTCCAGA AAACTCTGCA GGTTTCTCAG CCGCCGCTAA 481 GATAGCATCT GAATGATTAT GTGCAGCCGA TGTTGTTGCA GCACTTACTA TTCCAGCATT 541 TGTTTGACTT GAGTTAGTCT TTTTTTTTCT CAAACTTCTT TAACTTCAGC AAACTTCAGA 601 ACAGCAACAA GTCACACAGA CTCAGTCGAT CGACACTTTG ATTTTTTTTA GAGAAAAATA 661 ATACNGAGAA GGAAAATTTT CAGTGTTTGA AAATCAAAAT TGACTTCCTT TATAGCAATT 721 TTCAGCAAGG AACGTGTCTG TTCTGTGAAA TCTGTTC Predicted gene structure (within gDNA segment 92041 to 99341): Exon 1 98321 98515 ( 195 n); cDNA 569 757 ( 189 n); score: 0.874 PPA cDNA 10 1 MATCH C10HBa0111D09.1+ SGN-E542858+ 0.874 195 0.258 C PGS_C10HBa0111D09.1+_SGN-E542858+ (98321 98515) Alignment (genomic DNA sequence = upper lines): CTCAAACTTC TTTAACTTCA ACGAAC-TGA AAACAGCAAC AAGTCACACA GACTCAGTCG 98379 |||||||||| |||||||||| | ||| | | ||||||||| |||||||||| |||||||||| CTCAAACTTC TTTAACTTCA GCAAACTTCA GAACAGCAAC AAGTCACACA GACTCAGTCG 628 ATCGACACTT TGATTTTATT TGAGAGAAAA ATAAATGCAG AGAAAGAAAA AATCTTCAGT 98439 |||||||||| ||||||| || | |||||||| || ||| | | || ||| || ||| |||||| ATCGACACTT TGATTTT-TT TTAGAGAAAA AT-AATACNG AG-AAG-GAA AATTTTCAGT 684 GATTAAAAAA TCAAAAATTG ACTTCCTTTT ATAGCCATTT TCAGCAAGGA ACATGTCTTT 98499 | || |||| || ||||||| |||||| ||| ||||| |||| |||||||||| || ||||| | G-TTTGAAAA TC-AAAATTG ACTTCC-TTT ATAGCAATTT TCAGCAAGGA ACGTGTCTGT 741 TCAGTGAAAT CTGTTC 98515 || ||||||| |||||| TCTGTGAAAT CTGTTC 757 hqPGS_C10HBa0111D09.1+_SGN-E542858+ (98321 98515) ******************************************************************************** EST sequence 88 -strand 658 n (File: SGN-E542859-) 1 TGTCTGTTAG GAAAATAACG ACTTTTTGGA AAGTAACGAC TTTTCCGAAA GAGTAACAAC 61 TTTTCAAAAT GTTACCGTTA ACCGCAAATT TATTAGAGAT AAATATTAAC AGGATTTATT 121 TGATTTAACA AAAAGTGATT AAATAAATTT TGTCCAAAAA ATTTATCAAT CCAATCACAT 181 CATTTGCCAA ATCCAAATCC AAAGCCGAGC GATGATGACG GCGCGAGGGG GCATCTTCTT 241 CTTAGCTCTT TAAGAAGTAA TGGAAGTGTT TCCTTATATA ACGACAACAA TTTCCCTTTC 301 TTTTGCCGAT ATGGGAGAAA TGAATTTTCA TTTGCACTTT GCAAATGACT TTTCAGTTTC 361 CCTCCAGAGT AGTTCCCTCA CCTTTCATAT TCTCTTTTTT TTTTCCCATT CACACTTGCT 421 AAACCCCAAC AAGAACAAGG TATTATTATA ATTTGGTCCA AAATGTGGTT AAGATTTGGG 481 AGTTTATCTT GAACAAGTGA TTAATGATAT TTGATATATA AAGAACAATG CCGAAAATAT 541 GTTTGAACTA GTCGATATAG ATCAATCTTT TAACTCGTTA CGTTTTTAGC TCAAAAATAT 601 TTTTTTTACT AACAATTACT CCAAAAAAAA AAAAAAAAAA ACTCGAGACA GTTCTCTC Predicted gene structure (within gDNA segment 97368 to 102359): Exon 1 98678 98806 ( 129 n); cDNA 304 431 ( 128 n); score: 0.891 PPA cDNA 623 642 MATCH C10HBa0111D09.1+ SGN-E542859- 0.891 129 0.196 C PGS_C10HBa0111D09.1+_SGN-E542859- (98678 98806) Alignment (genomic DNA sequence = upper lines): TGCAAATTTA TAAGAAATGA CTTTTCATTT GCACTTTGCA AATGACTTTT CATTTTCCCT 98737 ||| || | |||||||| ||||||||| |||||||||| |||||||||| || ||||||| TGCCGATATG GGAGAAATGA ATTTTCATTT GCACTTTGCA AATGACTTTT CAGTTTCCCT 363 CCAAAGTAGT TCCCTCACTT TTCATATTCT CTCTTTTCTT TTCCCATTCA CATTTGCTAA 98797 ||| |||||| |||||||| | |||||||||| || |||| || |||||||||| || ||||||| CCAGAGTAGT TCCCTCACCT TTCATATTCT CT-TTTTTTT TTCCCATTCA CACTTGCTAA 422 AACCCAACA 98806 | ||||||| ACCCCAACA 431 hqPGS_C10HBa0111D09.1+_SGN-E542859- (98678 98806) ******************************************************************************** EST sequence 66 -strand 586 n (File: SGN-E250408-) 1 AAAATTGTGT CTGTTAGGAA AATAACTACT TTTTGGAAAG TAACGACTTT TCGGAAAAGT 61 AACGACTTTT CGGAATGTTA CTGTTACCCG CAAATTTATA AGAAATAATA TTAACAGGAT 121 TTATTTGATT TAACAAAAAT TGATTGAATA AATTTTGTCC AAAAAATATA TCAATCAATC 181 ACATCATTTG CCAAATCCAA ATCCAAATCC AAAGAAATGA CTTTTCATTT GCACTTTGCA 241 AATGACTTTT CATTTTCCCT CCAAAGTAGT TCCCTCACTT TTGATATTCT CTTTTTTATT 301 TTTCCATTCA CACTTGTTAA AACCCAACAT AAACATCATT TTTGTATGTG ACACATAACA 361 AAGAAGATTC CAGAATATTT AGGTCATGTT TATCATTAGT ATGCTGATTT TAGTAGCAAG 421 TTTAGTTGGT ATATTCACGA TACAACTACT CTTAAGAAAT TTGAAACAAT ATAGATAGAA 481 ATAATGGGGA CGTATAATTT AGGAAAAATT AGTGGGTTGT AGAGAATATA TGCAATTCGT 541 GAAAATTGAT ACCAGCATAT GTGTGTACTA CTTTTTGTGC AGGCAC Predicted gene structure (within gDNA segment 97361 to 102999): Exon 1 98680 98806 ( 127 n); cDNA 204 329 ( 126 n); score: 0.929 MATCH C10HBa0111D09.1+ SGN-E250408- 0.929 127 0.217 C PGS_C10HBa0111D09.1+_SGN-E250408- (98680 98806) Alignment (genomic DNA sequence = upper lines): CAAATTTATA AGAAATGACT TTTCATTTGC ACTTTGCAAA TGACTTTTCA TTTTCCCTCC 98739 ||||| | | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAATCCA-A AGAAATGACT TTTCATTTGC ACTTTGCAAA TGACTTTTCA TTTTCCCTCC 262 AAAGTAGTTC CCTCACTTTT CATATTCTCT CTTTTCTTTT CCCATTCACA TTTGCTAAAA 98799 |||||||||| |||||||||| ||||||||| |||| |||| ||||||||| ||| ||||| AAAGTAGTTC CCTCACTTTT GATATTCTCT TTTTTATTTT TCCATTCACA CTTGTTAAAA 322 CCCAACA 98806 ||||||| CCCAACA 329 hqPGS_C10HBa0111D09.1+_SGN-E250408- (98680 98806) ******************************************************************************** EST sequence 48 -strand 792 n (File: SGN-E351952-) 1 TGGAGTTTGA AGTCCTCCAA TAGGTTTCAA CTTAGAGAGA GAATTTAGAG AGAAAGGAGA 61 GCATGTAAAT TTTTTGAATT ATAAACATCA TTTGTGAAAT CCAAATCCAA AACCGAAGCC 121 GAGGCCGAGG CCAAGCGGCG GCGACGGCGT GAGGGGGCAC CTTCTTCTTA ACCCTTTAAG 181 AAGCACAGGA AGTGTTTCCT AATATAAGGA CAACAATTTC ATTTCTTCTA CCTATATGAG 241 AAAAATGACT TTTCATTTGT ACTTTGCAAA TGACTTTTCT TTTTTCCTCC AAAATAGGTT 301 CCCTCAATTT TCCATTTTTC TCTTCTCTTT TTCCATTCAC ATTTTGCTAA ACCCAAAAAT 361 CCCCCACATA AATGGGAAAT GTCTATTGTT AAAACATATG CATGAAAAAC TGAAGTGTCT 421 TGTGTGTAAG CGTTAGTCAC ATCTGGATAA GTAGGTTTCT CTTTAAACTT TCCACAGTGA 481 TCATATATCG GATATACTCG ATCAATCGGT AGATTTGATA TCTTTAAACC ATCGAGCTTT 541 GGTGTATACT TAGACAACAT AAGTCACACA ATCAACCCTT GAATTGTTCT TAGTTCTCAT 601 TATTTTGTTC ATTTCATCCA AGAACACATC TCAATTAGTA AGTGCTTAGA GAACTGGCCT 661 TACCGGATTC TCCTTCAAGT GACGTACACT TCACACTCAC ATAGGTGGTT TCTATATGTG 721 TTATCCCGTA GATACACTAT TTGATATACT ATGTATCAAA CTTAGAATCC ATTAAAAAGT 781 CCTTATGTCT TT Predicted gene structure (within gDNA segment 95662 to 101557): Exon 1 98692 99238 ( 547 n); cDNA 243 792 ( 550 n); score: 0.867 MATCH C10HBa0111D09.1+ SGN-E351952- 0.867 547 0.691 C PGS_C10HBa0111D09.1+_SGN-E351952- (98692 99238) Alignment (genomic DNA sequence = upper lines): AAATGACTTT TCATTTGCAC TTTGCAAATG ACTTTTCATT TTCCCTCCAA AGTA-GTTCC 98750 |||||||||| ||||||| || |||||||||| ||||||| || || ||||||| | || ||||| AAATGACTTT TCATTTGTAC TTTGCAAATG ACTTTTCTTT TTTCCTCCAA AATAGGTTCC 302 CTCACTTTTC ATATTCTCTC TTTTCTTTTC CCATTCACA- TTTGCTAAAA CCCAACAATC 98809 |||| ||||| || |||| || |||||| ||||||||| |||||| ||| ||||| |||| CTCAATTTTC CATTTTTCTC TTCTCTTTTT CCATTCACAT TTTGCT-AAA CCCAAAAATC 361 CCCCACATGA ATGGGGAA-G GCTATTGTTA AAACATATGC ATGAAAAAAC TTGTGTGTCT 98868 |||||||| | ||||| || | ||||||||| |||||||||| ||| |||||| | |||||| CCCCACATAA ATGGGAAATG TCTATTGTTA AAACATATGC ATG-AAAAAC TGAAGTGTCT 420 TGTAGGTAAA GGTTAATCGC ATCTGGATAA GTAGGTTTAC CTTTAAACTT TCCGTAGTGA 98928 ||| |||| |||| || | |||||||||| |||||||| |||||||||| ||| ||||| TGTGTGTAAG CGTTAGTCAC ATCTGGATAA GTAGGTTTCT CTTTAAACTT TCCACAGTGA 480 ACATATATCG GATATACTCG GTCAATCGGT AGATTTGATA TCTTTGAACC GTCGAGCTTT 98988 ||||||||| |||||||||| ||||||||| |||||||||| ||||| |||| ||||||||| TCATATATCG GATATACTCG ATCAATCGGT AGATTTGATA TCTTTAAACC ATCGAGCTTT 540 GGTGTATACC TAGACAACAT -A-TCACACA ATCAACCCTT GAACTGTTCT TAGTTCTCAT 99046 ||||||||| |||||||||| | ||||||| |||||||||| ||| |||||| |||||||||| GGTGTATACT TAGACAACAT AAGTCACACA ATCAACCCTT GAATTGTTCT TAGTTCTCAT 600 TGTTTTGTTC GTTTCAGCCA TGAACACATC TTGGATAGTA AGTGCTTAAA GAACTGGCCT 99106 | |||||||| ||||| ||| ||||||||| | ||||| |||||||| | |||||||||| TATTTTGTTC ATTTCATCCA AGAACACATC TCAATTAGTA AGTGCTTAGA GAACTGGCCT 660 TACCGGATTC TCCTTGAAGC GGCTTACACT TCACACTTAC ATAGGTGATT TCTAAATGTG 99166 |||||||||| ||||| ||| | | |||||| ||||||| || ||||||| || |||| ||||| TACCGGATTC TCCTTCAAGT GACGTACACT TCACACTCAC ATAGGTGGTT TCTATATGTG 720 TTATCCCATA GATACACCAT TTTATATTCC CTGTATCAAA CTTAGAAACC ATTAAAAATT 99226 ||||||| || ||||||| || || |||| | ||||||||| ||||||| || |||||||| | TTATCCCGTA GATACACTAT TTGATATACT ATGTATCAAA CTTAGAATCC ATTAAAAAGT 780 CCTTATGTCT TT 99238 |||||||||| || CCTTATGTCT TT 792 hqPGS_C10HBa0111D09.1+_SGN-E351952- (98692 99238) ******************************************************************************** EST sequence 113 -strand 552 n (File: SGN-E357316-) 1 AAAAATGACT TTTCATTTGT ACTTTGCAAA TGACTTTTCT TTTTCCCTCC AAAATAGGTT 61 CCCTCAATTT TCCATTTTTC TCTTCTCTTT TTCCATTCAC ATTTTGCTAA ACCCAAAAAT 121 CCCCCACATA AATGGGAAAT GTCTATTGTT AAAACATATG CATGAAAAAC TGAAGTGTCT 181 TGTGTGTAAG CGTTAGTCAC ATCTGGATAA GTAGGTTTCT CTTTAAACTT TCCACAGTGA 241 TCATATATCG GATATACTCG ATCAATCGGT AGATTTGATA TCTTTAAACC ATCGAGCTTT 301 GGTGTATACT TAGACAACAT AAGTCACACA ATCAACCCTT GAATTGTTCT TAGTTCTCAT 361 TATTTTGTTC ATTTCATCCA AGAACACATC TCAATTAGTA AGTGCTTAGA GAACTGGCCT 421 TACCGGATTC TCCTTCAAGT GACGTACACT TCACACTCAC ATAGGTGGTT TCTATATGTG 481 TTATCCCGTA GATACACTAT TTGATATACT ATGTATCAAA CTTAGAATCC ATTAAAAAGT 541 CCTTATGTCT TT Predicted gene structure (within gDNA segment 98062 to 101557): Exon 1 98692 99238 ( 547 n); cDNA 3 552 ( 550 n); score: 0.869 MATCH C10HBa0111D09.1+ SGN-E357316- 0.869 547 0.991 C PGS_C10HBa0111D09.1+_SGN-E357316- (98692 99238) Alignment (genomic DNA sequence = upper lines): AAATGACTTT TCATTTGCAC TTTGCAAATG ACTTTTCATT TTCCCTCCAA AGTA-GTTCC 98750 |||||||||| ||||||| || |||||||||| ||||||| || |||||||||| | || ||||| AAATGACTTT TCATTTGTAC TTTGCAAATG ACTTTTCTTT TTCCCTCCAA AATAGGTTCC 62 CTCACTTTTC ATATTCTCTC TTTTCTTTTC CCATTCACA- TTTGCTAAAA CCCAACAATC 98809 |||| ||||| || |||| || |||||| ||||||||| |||||| ||| ||||| |||| CTCAATTTTC CATTTTTCTC TTCTCTTTTT CCATTCACAT TTTGCT-AAA CCCAAAAATC 121 CCCCACATGA ATGGGGAA-G GCTATTGTTA AAACATATGC ATGAAAAAAC TTGTGTGTCT 98868 |||||||| | ||||| || | ||||||||| |||||||||| ||| |||||| | |||||| CCCCACATAA ATGGGAAATG TCTATTGTTA AAACATATGC ATG-AAAAAC TGAAGTGTCT 180 TGTAGGTAAA GGTTAATCGC ATCTGGATAA GTAGGTTTAC CTTTAAACTT TCCGTAGTGA 98928 ||| |||| |||| || | |||||||||| |||||||| |||||||||| ||| ||||| TGTGTGTAAG CGTTAGTCAC ATCTGGATAA GTAGGTTTCT CTTTAAACTT TCCACAGTGA 240 ACATATATCG GATATACTCG GTCAATCGGT AGATTTGATA TCTTTGAACC GTCGAGCTTT 98988 ||||||||| |||||||||| ||||||||| |||||||||| ||||| |||| ||||||||| TCATATATCG GATATACTCG ATCAATCGGT AGATTTGATA TCTTTAAACC ATCGAGCTTT 300 GGTGTATACC TAGACAACAT -A-TCACACA ATCAACCCTT GAACTGTTCT TAGTTCTCAT 99046 ||||||||| |||||||||| | ||||||| |||||||||| ||| |||||| |||||||||| GGTGTATACT TAGACAACAT AAGTCACACA ATCAACCCTT GAATTGTTCT TAGTTCTCAT 360 TGTTTTGTTC GTTTCAGCCA TGAACACATC TTGGATAGTA AGTGCTTAAA GAACTGGCCT 99106 | |||||||| ||||| ||| ||||||||| | ||||| |||||||| | |||||||||| TATTTTGTTC ATTTCATCCA AGAACACATC TCAATTAGTA AGTGCTTAGA GAACTGGCCT 420 TACCGGATTC TCCTTGAAGC GGCTTACACT TCACACTTAC ATAGGTGATT TCTAAATGTG 99166 |||||||||| ||||| ||| | | |||||| ||||||| || ||||||| || |||| ||||| TACCGGATTC TCCTTCAAGT GACGTACACT TCACACTCAC ATAGGTGGTT TCTATATGTG 480 TTATCCCATA GATACACCAT TTTATATTCC CTGTATCAAA CTTAGAAACC ATTAAAAATT 99226 ||||||| || ||||||| || || |||| | ||||||||| ||||||| || |||||||| | TTATCCCGTA GATACACTAT TTGATATACT ATGTATCAAA CTTAGAATCC ATTAAAAAGT 540 CCTTATGTCT TT 99238 |||||||||| || CCTTATGTCT TT 552 hqPGS_C10HBa0111D09.1+_SGN-E357316- (98692 99238) ******************************************************************************** EST sequence 68 -strand 417 n (File: SGN-E250410-) 1 TAAATTTTGT CCACATAATA TATCAATCAA TCACATCATT TGCCAAATCC AAATCCAAAT 61 CCAAAGCAAT GACTTTTCAT TTGCACTTTG CAAATGACTT TTCATTTTCC TTCCAAAGTA 121 GTTCCCTCAC TTTTGATATT CTCTTTTTTA TTTTTCCATT CACACTTGTT AAAACCCAAT 181 ATAAACATCA TTTTTGTATG TGACACATAA CAAAGAAGAT TCCAGAATAT TTAGGTCATG 241 TTTATCATTA GTATGCTGAT TTTAGTAGCA AGTTTAGTTG GTATATTCAC GATACAACTA 301 CTCTTAAGAA ATTTGAAACA ATATAGATAG TAATAATGGG GACGTATAAT TTAGGAAAAA 361 TTAGCGGGTT GTAGAGAATA TATGCTATTC GTGAAAATTG ATTCCAGCAT ATGTGTG Predicted gene structure (within gDNA segment 97412 to 102789): Exon 1 98693 98804 ( 112 n); cDNA 68 179 ( 112 n); score: 0.938 MATCH C10HBa0111D09.1+ SGN-E250410- 0.938 112 0.269 C PGS_C10HBa0111D09.1+_SGN-E250410- (98693 98804) Alignment (genomic DNA sequence = upper lines): AATGACTTTT CATTTGCACT TTGCAAATGA CTTTTCATTT TCCCTCCAAA GTAGTTCCCT 98752 |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| AATGACTTTT CATTTGCACT TTGCAAATGA CTTTTCATTT TCCTTCCAAA GTAGTTCCCT 127 CACTTTTCAT ATTCTCTCTT TTCTTTTCCC ATTCACATTT GCTAAAACCC AA 98804 ||||||| || ||||||| || || |||| || ||||||| || | |||||||| || CACTTTTGAT ATTCTCTTTT TTATTTTTCC ATTCACACTT GTTAAAACCC AA 179 hqPGS_C10HBa0111D09.1+_SGN-E250410- (98693 98804) ******************************************************************************** EST sequence 90 -strand 545 n (File: SGN-E395967-) 1 TCCATAAAGC AACTTAATAA GTTTGCAAAC TTTTTTTCTT TATCGGGAAC CATGAAGCCC 61 TTAGGTTACT CCCCCCAAAT CTCTTTTTCT AGCTCTCCAT TTAAGAAGGT GGTTTCACAT 121 CCATTTGATG GATTTCAAGA CCGTATAATG CATCTATGGA AATTAACATC CTAATTGATG 181 TAATCCTTGT CACTGGCGAG TATGTGTAAA AATAATCAAG ACCTTCTTTC TGTCTAAAGC 241 CATTGACAAC AAGTCTCACT TTATATTTTT GAATAGCTTC ATCATCTTTC ATTTTCATTT 301 TGAAAATCTG TTTCGAACCC AAGGGTTTGT TTCCTAGAGG AAGATCAACC AACTCCCAAG 361 TATGATTGAT TAAGATTGAT TCAATCTCAT TATTGGCAAA CTCTTTCCAA GAGGTTGAGT 421 CACTAGATAA TATAGATTTC TTGAATGTTT GAGGCTCACT TTCAAGAAGC AATGTTACAA 481 AGTTATATCC AAATGAAGTA GTTATCCTTT GACGTTTACT GTGTGTAGGA CTCTCTTTTG 541 GTCTT Predicted gene structure (within gDNA segment 97050 to 102314): Exon 1 100485 101031 ( 547 n); cDNA 2 545 ( 544 n); score: 0.835 MATCH C10HBa0111D09.1+ SGN-E395967- 0.835 547 1.004 C PGS_C10HBa0111D09.1+_SGN-E395967- (100485 101031) Alignment (genomic DNA sequence = upper lines): CCATAAAGTG ACTTAATAAG TTTGCACACT TTCTTTTCTT TACCAGGAAC TACAAAACCC 100544 |||||||| |||||||||| |||||| ||| || ||||||| || | ||||| | || ||| CCATAAAGCA ACTTAATAAG TTTGCAAACT TT-TTTTCTT TATCGGGAAC CATGAAGCCC 60 TCAGGCTGTT CTATGTAAAT TTCCTCTTCA AGCTCTCCAT TTAAGAAGGC TGTTTTTACA 100604 | ||| | | | |||| || | ||| |||||||||| ||||||||| || ||| ||| TTAGGTTACT CCCCCCAAAT CTCTTTTTCT AGCTCTCCAT TTAAGAAGG- TGGTTTCACA 119 TCCATTTGAT GAATTTCAAG ACCGTATACT GCAGCTAGTG CAATAAACAT CCGAATTGAT 100664 |||||||||| | |||||||| |||||||| | ||| ||| | ||| ||||| || ||||||| TCCATTTGAT GGATTTCAAG ACCGTATAAT GCATCTATGG AAATTAACAT CCTAATTGAT 179 GTAATCATAG TCACTGGTGA GTATGTGTCA AAATAATCAA GACTTTCTTT TTGTCTAAAA 100724 |||||| | | ||||||| || |||||||| | |||||||||| ||| |||||| |||||||| GTAATCCTTG TCACTGGCGA GTATGTGTAA AAATAATCAA GACCTTCTTT CTGTCTAAAG 239 CCTTTGACAA CAAGTCTTGC TTTATATTTG TCAATAGTTC CATCGTCTTT CATCTTCCTT 100784 || ||||||| ||||||| | ||||||||| | ||||| | |||| ||||| ||| ||| || CCATTGACAA CAAGTCTCAC TTTATATTTT TGAATAGCTT CATCATCTTT CATTTTCATT 299 TTAAAGATCC ATTTTGAACC CAAGGGTTTG TTCCCTGAAG GAAGATCAAC CAACTCCCAA 100844 || || ||| ||| ||||| |||||||||| || ||| || |||||||||| |||||||||| TTGAAAATCT GTTTCGAACC CAAGGGTTTG TTTCCTAGAG GAAGATCAAC CAACTCCCAA 359 GTATGATTGC TTAAGATTGA TTCAATTTCA CTATTAACAG CCTCCTTCCA AGAGGATGAG 100904 ||||||||| |||||||||| |||||| ||| |||| || ||| ||||| ||||| |||| GTATGATTGA TTAAGATTGA TTCAATCTCA TTATTGGCAA ACTCTTTCCA AGAGGTTGAG 419 TCACTAGACA ACATTGCTTC CTTGAATGTT TGAGGCTCAC TTTCAAGAAG AAATGTTACA 100964 |||||||| | | || | || |||||||||| |||||||||| |||||||||| ||||||||| TCACTAGATA ATATAGATTT CTTGAATGTT TGAGGCTCAC TTTCAAGAAG CAATGTTACA 479 AAATCTGATC CAAATGAAGT AGATGTCTTT TGACGTTTAC TGCGTCTTGG ACTTTCTTCA 101024 || | ||| |||||||||| || | || || |||||||||| || || | || ||| |||| AAGTTATATC CAAATGAAGT AGTTATCCTT TGACGTTTAC TGTGTGTAGG ACTCTCTT-T 538 TTTTGTT 101031 | | || TGGTCTT 545 hqPGS_C10HBa0111D09.1+_SGN-E395967- (100485 101031) ******************************************************************************** EST sequence 41 +strand 608 n (File: SGN-E251204+) 1 TCAAGTCAAA CAAATGCTGG AACAGTAAGT GCTGCAACAA CAATGGTTGC ACATAATCGT 61 TCACATGCTG CCTTAGCACC GGCTGAGAAA CCTGCAAAGT TTTCTGGAGT CGACTTTAAG 121 AGATGGCAGC AAAAGATGTT CTTCTATCTC ACTACGTTGA GTCTGCAGAA GTTCATCAAT 181 GAGAATGTTC CTGTTATGTC AGATGAAACT TCGGCTGATG AACGATTCTT GGTAACAGAA 241 GCATGGACAC ACTCAGATTT TTTGTGTAAA AATTATATTT TGAGTGGTCT GCAAGATGAT 301 CTGTACAATG TGTACAGCAA TGCAAAAACC TCAAAAGAAC TCTGGGATGC TTTAGAAAAG 361 AAGTACAAAA CAGAAGATGC CGGAATGAAG AAATTCATTG TGGCAAAATT TCTAGACTTT 421 AAGATGATAG ACAGTAAGAC TGTCGTCACC CAAGTTCAAG AATTGCAGGT TATAATCCAT 481 GATCTCCTTG CTGAAGGATT GATTGTGAAT GATGCTTTTC AAGTGGCTGC AATTATTGAA 541 AAGTTACCTC TATTGTGGAA GGACTTTAAA AACTACTTGA AACACAAACG CAAGGAGATG 601 ATTGTTGA Predicted gene structure (within gDNA segment 104000 to 102047): Exon 1 103400 102904 ( 497 n); cDNA 1 496 ( 496 n); score: 0.978 Intron 1 102903 102832 ( 72 n); Pd: 0.997 (s: 0.98), Pa: 0.907 (s: 0.98) Exon 2 102831 102720 ( 112 n); cDNA 497 608 ( 112 n); score: 0.964 MATCH C10HBa0111D09.1- SGN-E251204+ 0.975 609 1.002 C PGS_C10HBa0111D09.1-_SGN-E251204+ (103400 102904,102831 102720) Alignment (genomic DNA sequence = upper lines): TCAAGTCAAA CAAATGCTGG AACAGTAAGT GCTGCAACAA CAACGGTTGC ACATAATCAT 103341 |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| |||||||| | TCAAGTCAAA CAAATGCTGG AACAGTAAGT GCTGCAACAA CAATGGTTGC ACATAATCGT 60 TCAAATGCTG CCTTAGCACC GGCTGAGAAA CCTGCAAAGT TTTTTGGAGT CGACTTTAAG 103281 ||| |||||| |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| TCACATGCTG CCTTAGCACC GGCTGAGAAA CCTGCAAAGT TTTCTGGAGT CGACTTTAAG 120 AGATGGCAGC AAAAGATGTT CTTCTATCTC ACTACGTTGA GTCTGCAGAA GTTCATCAAT 103221 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATGGCAGC AAAAGATGTT CTTCTATCTC ACTACGTTGA GTCTGCAGAA GTTCATCAAT 180 GAGAATGTTC CTGTTATGTC AGATGAAACT CCGGCTGATG AACGATTCTT GGTAACAGAA 103161 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| GAGAATGTTC CTGTTATGTC AGATGAAACT TCGGCTGATG AACGATTCTT GGTAACAGAA 240 GCATGGACAC ACTCTGATTT TTTTGTGTAA AAATTATATT TTGAGTGGTC TGCAAGATGA 103101 |||||||||| |||| || || |||||||||| |||||||||| |||||||||| |||||||||| GCATGGACAC ACTCAGA-TT TTTTGTGTAA AAATTATATT TTGAGTGGTC TGCAAGATGA 299 TCTGTACAAT GTGTACAGCA ATGCAAAAAC CTCAAAAGAA CTCTGGGATG CTTTAGAAAA 103041 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGTACAAT GTGTACAGCA ATGCAAAAAC CTCAAAAGAA CTCTGGGATG CTTTAGAAAA 359 GAAGTACAAA ACAGAAGATG TCGGAATGAA GAAATTCATT GTGGCAAAAT TTCTGGACTT 102981 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||| ||||| GAAGTACAAA ACAGAAGATG CCGGAATGAA GAAATTCATT GTGGCAAAAT TTCTAGACTT 419 TAAGATGATA GACAGTAAGT CTGTCGTCAC CCAAGTTCAA GAATTGCAGG TCATAATCCA 102921 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| | |||||||| TAAGATGATA GACAGTAAGA CTGTCGTCAC CCAAGTTCAA GAATTGCAGG TTATAATCCA 479 TGATCTCCTT GCTGAAGGTA TAAATTTATT TAATGCCTAT GTTAGAAATA TTAAGTTTTC 102861 |||||||||| ||||||| TGATCTCCTT GCTGAAG... .......... .......... .......... .......... 496 CCTTAATACT CACATAACCT TTAATGTAGG ATTGATTGTG AATGATGTTT TTCAAGTGGC 102801 | |||||||||| ||||||| || |||||||||| .......... .......... .........G ATTGATTGTG AATGATGCTT TTCAAGTGGC 527 TGCAATTATT GAAAAGTTAT CTCCATTGTG GAAGGACTTT AAAAACTACT TGAAACACAA 102741 |||||||||| ||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| TGCAATTATT GAAAAGTTAC CTCTATTGTG GAAGGACTTT AAAAACTACT TGAAACACAA 587 ACGCAAGGAG ATGACTGTTG A 102720 |||||||||| |||| ||||| | ACGCAAGGAG ATGATTGTTG A 608 hqPGS_C10HBa0111D09.1-_SGN-E251204+ (103400 102904,102831 102720) ******************************************************************************** EST sequence 38 +strand 772 n (File: SGN-E261540+) 1 TAAAACCTTT ATGGTTTTCT ACTCTACTTG AATTTTTAAA ATCATTCGAT TAACGATTAA 61 AAAAACATAA AAACTTTATC GTTAAATCAG AAACAGGTTG TGTAAAGATT TGCTCTTTAC 121 TGTTAGTATT TTAAATACTT AATTTATCTG CCAATTGTGA CAGAAAAAAA AGACTAATTC 181 AAGTCAAACA AATGCTGGAA CAGTAAGTGC TGCAACAACA ATGGTTGCAC ATAATCGTTC 241 ACATGCTGCC TTAGCACCGG CTGAGAAACC TGCAAAGTTT TCTGGAGTCG ACTTTAAGAG 301 ATGGCAGCAA AAGATGTTCT TCTATCTCAC TACGTTGAGT CTGCAGAAGT TCATCAATGA 361 GAATGTTCCT GTTATGTCAG ATGAAACTTC GGCTGATGAA CGATTCTTGG TAACAGAAGC 421 ATGGACACAC TCAGATTTTT TGTGTAAAAA TTATATTTTG AGTGGTCTGC AAGATGATCT 481 GTACAATGTG TACAGCAATG CAAAAACCTC AAAAGAACTC TGGGATGCTT TAGAAAAGAA 541 GTACAAAACA GAAGATGCCG GAATGAAGAA ATTCATTGTG GCAAAATTTC TAGACTTTAA 601 GATGATAGAC AGTAAGACTG TCGTCACCCA AGTTCAAGAA TTGCAGGTTA TAATCCATGA 661 TCTCCTTGCT GAAGGATTGA TTGTGAATGA TGCTTTTCAA GTGGCTGCAA TTATTGAAAA 721 GTTACCTCCT ATTGTGGAAG GACTTTAAAA ACTACTTGAA ACACAAACGC AA Predicted gene structure (within gDNA segment 104180 to 102125): Exon 1 103580 102904 ( 677 n); cDNA 1 674 ( 674 n); score: 0.972 Intron 1 102903 102832 ( 72 n); Pd: 0.997 (s: 0.98), Pa: 0.907 (s: 0.98) Exon 2 102831 102735 ( 97 n); cDNA 675 772 ( 98 n); score: 0.954 MATCH C10HBa0111D09.1- SGN-E261540+ 0.970 774 1.003 C PGS_C10HBa0111D09.1-_SGN-E261540+ (103580 102904,102831 102735) Alignment (genomic DNA sequence = upper lines): TAAAACCTTT ATGGTTTTCT ACTCTGCTTG AATTTTTAAA ATTCATTCGA TTAACGATTA 103521 |||||||||| |||||||||| ||||| |||| |||||||||| | |||||||| |||||||||| TAAAACCTTT ATGGTTTTCT ACTCTACTTG AATTTTTAAA A-TCATTCGA TTAACGATTA 59 AAAGAACATA AAAACTTTAT CGTTAAATCA AAAACAGTTT GTGTAAAGAT TTGTTCTTTA 103461 ||| |||||| |||||||||| |||||||||| |||||| || |||||||||| ||| |||||| AAAAAACATA AAAACTTTAT CGTTAAATCA GAAACAGGTT GTGTAAAGAT TTGCTCTTTA 119 CTGTTAGTAT TTTAAATACT TAATTTATCT GCCATTTGTG ACAGAAAAAA AATGACTAAT 103401 |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| || ||||||| CTGTTAGTAT TTTAAATACT TAATTTATCT GCCAATTGTG ACAGAAAAAA AA-GACTAAT 178 TCAAGTCAAA CAAATGCTGG AACAGTAAGT GCTGCAACAA CAACGGTTGC ACATAATCAT 103341 |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| |||||||| | TCAAGTCAAA CAAATGCTGG AACAGTAAGT GCTGCAACAA CAATGGTTGC ACATAATCGT 238 TCAAATGCTG CCTTAGCACC GGCTGAGAAA CCTGCAAAGT TTTTTGGAGT CGACTTTAAG 103281 ||| |||||| |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| TCACATGCTG CCTTAGCACC GGCTGAGAAA CCTGCAAAGT TTTCTGGAGT CGACTTTAAG 298 AGATGGCAGC AAAAGATGTT CTTCTATCTC ACTACGTTGA GTCTGCAGAA GTTCATCAAT 103221 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATGGCAGC AAAAGATGTT CTTCTATCTC ACTACGTTGA GTCTGCAGAA GTTCATCAAT 358 GAGAATGTTC CTGTTATGTC AGATGAAACT CCGGCTGATG AACGATTCTT GGTAACAGAA 103161 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| GAGAATGTTC CTGTTATGTC AGATGAAACT TCGGCTGATG AACGATTCTT GGTAACAGAA 418 GCATGGACAC ACTCTGATTT TTTTGTGTAA AAATTATATT TTGAGTGGTC TGCAAGATGA 103101 |||||||||| |||| || || |||||||||| |||||||||| |||||||||| |||||||||| GCATGGACAC ACTCAGA-TT TTTTGTGTAA AAATTATATT TTGAGTGGTC TGCAAGATGA 477 TCTGTACAAT GTGTACAGCA ATGCAAAAAC CTCAAAAGAA CTCTGGGATG CTTTAGAAAA 103041 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGTACAAT GTGTACAGCA ATGCAAAAAC CTCAAAAGAA CTCTGGGATG CTTTAGAAAA 537 GAAGTACAAA ACAGAAGATG TCGGAATGAA GAAATTCATT GTGGCAAAAT TTCTGGACTT 102981 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||| ||||| GAAGTACAAA ACAGAAGATG CCGGAATGAA GAAATTCATT GTGGCAAAAT TTCTAGACTT 597 TAAGATGATA GACAGTAAGT CTGTCGTCAC CCAAGTTCAA GAATTGCAGG TCATAATCCA 102921 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| | |||||||| TAAGATGATA GACAGTAAGA CTGTCGTCAC CCAAGTTCAA GAATTGCAGG TTATAATCCA 657 TGATCTCCTT GCTGAAGGTA TAAATTTATT TAATGCCTAT GTTAGAAATA TTAAGTTTTC 102861 |||||||||| ||||||| TGATCTCCTT GCTGAAG... .......... .......... .......... .......... 674 CCTTAATACT CACATAACCT TTAATGTAGG ATTGATTGTG AATGATGTTT TTCAAGTGGC 102801 | |||||||||| ||||||| || |||||||||| .......... .......... .........G ATTGATTGTG AATGATGCTT TTCAAGTGGC 705 TGCAATTATT GAAAAGTTAT CTCC-ATTGT GGAAGGACTT TAAAAACTAC TTGAAACACA 102742 |||||||||| ||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| TGCAATTATT GAAAAGTTAC CTCCTATTGT GGAAGGACTT TAAAAACTAC TTGAAACACA 765 AACGCAA 102735 ||||||| AACGCAA 772 hqPGS_C10HBa0111D09.1-_SGN-E261540+ (103580 102904,102831 102735) ******************************************************************************** EST sequence 52 +strand 727 n (File: SGN-E262550+) 1 TTATACAGTT TCTGTGTTTG AGGTTTCTGG AGATTAAAAC CTTTATGGTT TTCTACTCTA 61 CTTGAATTTT TAAAATCATT CGATTAACGA TTAAAAAAAC ATAAAAACTT TATCGTTAAA 121 TCAGAAACAG GTTGTGTAAA GATTTGCTCT TTACTGTTAG TATTTTAAAT ACTTAATTTA 181 TCTGCCAATT GTGACAGAAA AAAAAGACTA ATTCAAGTCA AACAAATGCT GGGACAGTAA 241 GTGCTGCAAC AACAATGGTT GCACATAATC GTTCACATGC TGCCTTAGCA CCGGCTGAGA 301 AACTGCAAAG TTTTCTGGAG TCGACTTTAA GAGATGGCAG CAAAAGATGT TCTTCTATCT 361 CACTACGTTG AGTCTGCAGA AGTTCATCAA TGAGAATGTT CCTGTTATGT CAGATGAAAC 421 TTCGGCTGAT GAACGATTCT TGGTAACAGA AGCATGGACA CACTCAGATT TTTTGTGTAA 481 AATTATATTT TGAGTGGTCT GCAAGATGAT CTGTANCATG TGTACAGCAA TGCAAAAACC 541 TCAAAAGAAC TCTGGGATGC TTTAGAAAAG AAGTACAAAC AGAAGATGCC GGAAATGAGA 601 AAATCATTGT GGGCAAATTT CTAGACTTTT AGATGATAGA CAGTAAGACT GTCGTCACCC 661 AAGTTTCAGA ATTGCAGGTT ATAATCCATG ATCTCCTTGC TGAAAGGATG ATTGTGAATG 721 ATGCTTT Predicted gene structure (within gDNA segment 104358 to 102065): Exon 1 103614 102904 ( 711 n); cDNA 1 705 ( 705 n); score: 0.948 Intron 1 102903 102832 ( 72 n); Pd: 0.997 (s: 0.92), Pa: 0.907 (s: 0) Exon 2 102831 102810 ( 22 n); cDNA 706 727 ( 22 n); score: 0.864 MATCH C10HBa0111D09.1- SGN-E262550+ 0.948 733 1.008 C PGS_C10HBa0111D09.1-_SGN-E262550+ (103614 102904,102831 102810) Alignment (genomic DNA sequence = upper lines): TTAAACAGTT TCTGTATTTG AGGTTTCTGG AGATTAAAAC CTTTATGGTT TTCTACTCTG 103555 ||| |||||| ||||| |||| |||||||||| |||||||||| |||||||||| ||||||||| TTATACAGTT TCTGTGTTTG AGGTTTCTGG AGATTAAAAC CTTTATGGTT TTCTACTCTA 60 CTTGAATTTT TAAAATTCAT TCGATTAACG ATTAAAAGAA CATAAAAACT TTATCGTTAA 103495 |||||||||| |||||| ||| |||||||||| ||||||| || |||||||||| |||||||||| CTTGAATTTT TAAAAT-CAT TCGATTAACG ATTAAAAAAA CATAAAAACT TTATCGTTAA 119 ATCAAAAACA GTTTGTGTAA AGATTTGTTC TTTACTGTTA GTATTTTAAA TACTTAATTT 103435 |||| ||||| | |||||||| ||||||| || |||||||||| |||||||||| |||||||||| ATCAGAAACA GGTTGTGTAA AGATTTGCTC TTTACTGTTA GTATTTTAAA TACTTAATTT 179 ATCTGCCATT TGTGACAGAA AAAAAATGAC TAATTCAAGT CAAACAAATG CTGGAACAGT 103375 |||||||| | |||||||||| |||||| ||| |||||||||| |||||||||| |||| ||||| ATCTGCCAAT TGTGACAGAA AAAAAA-GAC TAATTCAAGT CAAACAAATG CTGGGACAGT 238 AAGTGCTGCA ACAACAACGG TTGCACATAA TCATTCAAAT GCTGCCTTAG CACCGGCTGA 103315 |||||||||| ||||||| || |||||||||| || |||| || |||||||||| |||||||||| AAGTGCTGCA ACAACAATGG TTGCACATAA TCGTTCACAT GCTGCCTTAG CACCGGCTGA 298 GAAACCTGCA AAGTTTTTTG GAGTCGACTT TAAGAGATGG CAGCAAAAGA TGTTCTTCTA 103255 |||| ||||| ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| GAAA-CTGCA AAGTTTTCTG GAGTCGACTT TAAGAGATGG CAGCAAAAGA TGTTCTTCTA 357 TCTCACTACG TTGAGTCTGC AGAAGTTCAT CAATGAGAAT GTTCCTGTTA TGTCAGATGA 103195 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCACTACG TTGAGTCTGC AGAAGTTCAT CAATGAGAAT GTTCCTGTTA TGTCAGATGA 417 AACTCCGGCT GATGAACGAT TCTTGGTAAC AGAAGCATGG ACACACTCTG ATTTTTTTGT 103135 |||| ||||| |||||||||| |||||||||| |||||||||| |||||||| | | |||||||| AACTTCGGCT GATGAACGAT TCTTGGTAAC AGAAGCATGG ACACACTCAG A-TTTTTTGT 476 GTAAAAATTA TATTTTGAGT GGTCTGCAAG ATGATCTGTA CAATGTGTAC AGCAATGCAA 103075 || ||||||| |||||||||| |||||||||| |||||||||| |||||||| |||||||||| GT-AAAATTA TATTTTGAGT GGTCTGCAAG ATGATCTGTA NCATGTGTAC AGCAATGCAA 535 AAACCTCAAA AGAACTCTGG GATGCTTTAG AAAAGAAGTA CAAAACAGAA GATGTCGGAA 103015 |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| |||| ||||| AAACCTCAAA AGAACTCTGG GATGCTTTAG AAAAGAAGTA C-AAACAGAA GATGCCGGAA 594 TGAAGAAATT CATTGTGGCA AAATTTCTGG ACTTTAAGAT GATAGACAGT AAGTCTGTCG 102955 ||||| | |||||||| |||||||| | ||||| |||| |||||||||| ||| |||||| ATGAGAAAAT CATTGTGGGC AAATTTCTAG ACTTTTAGAT GATAGACAGT AAGACTGTCG 654 TCACCCAAGT TCAAGAATTG CAGGTCATAA TCCATGATCT CCTTGCTGAA GGTATAAATT 102895 |||||||||| | ||||||| ||||| |||| |||||||||| |||||||||| TCACCCAAGT TTCAGAATTG CAGGTTATAA TCCATGATCT CCTTGCTGAA A......... 705 TATTTAATGC CTATGTTAGA AATATTAAGT TTTCCCTTAA TACTCACATA ACCTTTAATG 102835 .......... .......... .......... .......... .......... .......... 705 TAGGATTGAT TGTGAATGAT GTTTT 102810 | |||| |||||||||| | ||| ...GGATGAT TGTGAATGAT GCTTT 727 hqPGS_C10HBa0111D09.1-_SGN-E262550+ (103614 102904,102831 102810) ******************************************************************************** EST sequence 24 -strand 757 n (File: SGN-E542858-) 1 GAACAGATTT CACAGAACAG ACACGTTCCT TGCTGAAAAT TGCTATAAAG GAAGTCAATT 61 TTGATTTTCA AACACTGAAA ATTTTCCTTC TCNGTATTAT TTTTCTCTAA AAAAAATCAA 121 AGTGTCGATC GACTGAGTCT GTGTGACTTG TTGCTGTTCT GAAGTTTGCT GAAGTTAAAG 181 AAGTTTGAGA AAAAAAAAGA CTAACTCAAG TCAAACAAAT GCTGGAATAG TAAGTGCTGC 241 AACAACATCG GCTGCACATA ATCATTCAGA TGCTATCTTA GCGGCGGCTG AGAAACCTGC 301 AGAGTTTTCT GGAGTCGACT TTGAGAGATG GCAGCAAAAG ATGTTCTTCT ATCTCACTAC 361 GTTGAGTCTG CAGAAGTTCA TTAATGAGAA TGTTCCTGTT TATCAGATGA AACTCCGGCT 421 GATGAACGAT TCTTGGTAAC AGAAGCATGG ACACACTCAG ATTTTTTGTG TAAAAATTAT 481 ATTTTGAGTG GTCTGCAAGA TGAACAACAA TGCCAAAACC TCAAAGAACT CTTGGATGCT 541 TTAGAAAAGA AGTACAAAAC AGAAGATGCC GGAATGAAGA AATTCATTGT GGTAAAATTT 601 TTGGACTATA AGATGATAGA CAATAAGACT GTCGTCACCC AAGTTCAAGA ATTGCAGGTC 661 ATAATCCATG ATCTGTGCTG AATGTATAAA TTTATTTAAT GCCTATGTTA GAAATATTAA 721 GTTTTCCCTT AATAAATTTA TTTAATTAAA AAAAAAA Predicted gene structure (within gDNA segment 105642 to 102023): Exon 1 104031 103837 ( 195 n); cDNA 1 189 ( 189 n); score: 0.859 Intron 1 103836 103417 ( 420 n); Pd: 0.648 (s: 0.85), Pa: 0.966 (s: 0.94) Exon 2 103416 102853 ( 564 n); cDNA 190 734 ( 545 n); score: 0.920 PPA cDNA 748 757 MATCH C10HBa0111D09.1- SGN-E542858- 0.904 759 1.003 C PGS_C10HBa0111D09.1-_SGN-E542858- (104031 103837,103416 102853) Alignment (genomic DNA sequence = upper lines): GAATAGATTT CACTGAACAC ACATGTTTCT TGCTGAAAAT GGCTATAAAA GGAAGTCAAT 103972 ||| |||||| ||| ||||| ||| ||| || |||||||||| ||||| ||| ||||||||| GAACAGATTT CACAGAACAG ACACGTTCCT TGCTGAAAAT TGCTAT-AAA GGAAGTCAA- 58 TTTTGATTTT TTAATCACTG AAGATTTTTT CTTTCTCTGC ATTTATTTTT CTCTCAAATA 103912 |||||| ||| | || ||||| || | |||| | ||||| | | |||||||| |||| ||| | TTTTGA-TTT TCAAACACTG AA-A-ATTTT CCTTCTCNGT A-TTATTTTT CTCT-AAAAA 113 AAATCAAAGT GTCGATCGAC TGAGTCAGTG TGACTTGTTG CTGTT-TACA GTTCGTTGAA 103853 |||||||||| |||||||||| |||||| ||| |||||||||| ||||| | | ||| | |||| AAATCAAAGT GTCGATCGAC TGAGTCTGTG TGACTTGTTG CTGTTCTGAA GTTTGCTGAA 173 GTTAAAGAAG TTTGAGGTAC CACTATTTAT TTAACAGGTT TAATCTGTTT TATCTTGGGA 103793 |||||||||| |||||| GTTAAAGAAG TTTGAG.... .......... .......... .......... .......... 189 GAAATTAATC CATAACCTTG GGTACAGTGA GGGATTAAAT TTCTTAAGGA CACACAATAG 103733 .......... .......... .......... .......... .......... .......... 189 TTTCAGTGGA CTCGGATTAA TTCTTCTATT TTAAATTTTT TCTGCTTCAT CTTGTTTCTG 103673 .......... .......... .......... .......... .......... .......... 189 TTTCTGTTCA TTAACTTCAT AAATACAAGT TATTGTAAGA AGAACAATCT TAAGAAATTT 103613 .......... .......... .......... .......... .......... .......... 189 AAACAGTTTC TGTATTTGAG GTTTCTGGAG ATTAAAACCT TTATGGTTTT CTACTCTGCT 103553 .......... .......... .......... .......... .......... .......... 189 TGAATTTTTA AAATTCATTC GATTAACGAT TAAAAGAACA TAAAAACTTT ATCGTTAAAT 103493 .......... .......... .......... .......... .......... .......... 189 CAAAAACAGT TTGTGTAAAG ATTTGTTCTT TACTGTTAGT ATTTTAAATA CTTAATTTAT 103433 .......... .......... .......... .......... .......... .......... 189 CTGCCATTTG TGACAGAAAA AAAATGACTA ATTCAAGTCA AACAAATGCT GGAACAGTAA 103373 |||| |||| ||||| | |||||||| |||||||||| |||| ||||| .......... ......AAAA AAAAAGACTA ACTCAAGTCA AACAAATGCT GGAATAGTAA 233 GTGCTGCAAC AACAACGGTT GCACATAATC ATTCAAATGC TGCCTTAGCA CCGGCTGAGA 103313 |||||||||| |||| ||| | |||||||||| ||||| |||| | |||||| ||||||||| GTGCTGCAAC AACATCGGCT GCACATAATC ATTCAGATGC TATCTTAGCG GCGGCTGAGA 293 AACCTGCAAA GTTTTTTGGA GTCGACTTTA AGAGATGGCA GCAAAAGATG TTCTTCTATC 103253 |||||||| | ||||| |||| ||||||||| |||||||||| |||||||||| |||||||||| AACCTGCAGA GTTTTCTGGA GTCGACTTTG AGAGATGGCA GCAAAAGATG TTCTTCTATC 353 TCACTACGTT GAGTCTGCAG AAGTTCATCA ATGAGAATGT TCCTGTTATG TCAGATGAAA 103193 |||||||||| |||||||||| |||||||| | |||||||||| ||||||| | |||||||||| TCACTACGTT GAGTCTGCAG AAGTTCATTA ATGAGAATGT TCCTGTT-TA TCAGATGAAA 412 CTCCGGCTGA TGAACGATTC TTGGTAACAG AAGCATGGAC ACACTCTGAT TTTTTTGTGT 103133 |||||||||| |||||||||| |||||||||| |||||||||| |||||| || |||||||||| CTCCGGCTGA TGAACGATTC TTGGTAACAG AAGCATGGAC ACACTCAGA- TTTTTTGTGT 471 AAAAATTATA TTTTGAGTGG TCTGCAAGAT GATCTGTACA ATGTGTACAG CAATGCAAAA 103073 |||||||||| |||||||||| |||||||||| || || | | |||||| ||| AAAAATTATA TTTTGAGTGG TCTGCAAGAT GA-----AC- ------A-A- CAATGCCAAA 517 ACCTCAAAAG AACTCTGGGA TGCTTTAGAA AAGAAGTACA AAACAGAAGA TGTCGGAATG 103013 ||||| |||| |||||| ||| |||||||||| |||||||||| |||||||||| || ||||||| ACCTC-AAAG AACTCTTGGA TGCTTTAGAA AAGAAGTACA AAACAGAAGA TGCCGGAATG 576 AAGAAATTCA TTGTGGCAAA ATTTCTGGAC TTTAAGATGA TAGACAGTAA GTCTGTCGTC 102953 |||||||||| |||||| ||| |||| ||||| | |||||||| |||||| ||| | |||||||| AAGAAATTCA TTGTGGTAAA ATTTTTGGAC TATAAGATGA TAGACAATAA GACTGTCGTC 636 ACCCAAGTTC AAGAATTGCA GGTCATAATC CATGATCTCC TTGCTGAAGG TATAAATTTA 102893 |||||||||| |||||||||| |||||||||| |||||||| ||||||| | |||||||||| ACCCAAGTTC AAGAATTGCA GGTCATAATC CATGATCT-- GTGCTGAATG TATAAATTTA 694 TTTAATGCCT ATGTTAGAAA TATTAAGTTT TCCCTTAATA 102853 |||||||||| |||||||||| |||||||||| |||||||||| TTTAATGCCT ATGTTAGAAA TATTAAGTTT TCCCTTAATA 734 hqPGS_C10HBa0111D09.1-_SGN-E542858- (104031 103837,103416 102853) ******************************************************************************** EST sequence 33 -strand 718 n (File: SGN-E369759-) 1 TAAGGTTGAG AATCGAAGAG GATAATAAGG CTGCAGAAAA GAGGTCACGT GGTAATTCAG 61 CAATATCTGG AGTAAATTTT GTTGAAGAAG ATTCCACAAA ATTCAAGAAA AGAAAGAAAG 121 CATCTGGTCC AAAACGCAAT CCTCCTAAGA AGAAATTCAA TGGAAACTGC TTTAATTGTG 181 GTAAACATGG TCATAGGGCT AATGAATGCC GGGGTCCTAA GAAGGACAAG AAAAAGAAGG 241 ATCAAGCAAA CTTGGCTGAA TCCAAAGGAG AAATGGACGA TCTCTGTGCA ATGCTTTCAG 301 AATGTAACTT GGTTGGAAAT CCAAGAGAAT GGTGGATAGA TTCTGGTGCC TCATGCCATG 361 TTTGTGCCAA CAAAGAATTA TTTTCATCAT ATACTCTAGC ACTTACAGAT GAAAAATTAT 421 TTATGGCAAA CTCCGCTGTT GCAAAGGTGG AAGGAACTGG CAAAGTCCTA TTAAAGATGA 481 CATCAGGCAA GGTAGTGACT TTGAATATGG TCTCATATGT TCCAGAATTG AGAAATAATT 541 TAGTTTCAAT TCCAATTCTG ACCAAGAATG GATTTAAATG TGTATTTGTT TCTGATAAAG 601 TAGTAGTAAG CAAAAATGAT ATGTATGTAG GAAAAGACTA CCTTAGTGAT GGCCTTTTCA 661 AACTCAATGT AATTGCAGTT GATATGAATA AAGATTTTGC TTCTTCTTAA AAAAAAAA Predicted gene structure (within gDNA segment 103318 to 101298): Exon 1 102708 101988 ( 721 n); cDNA 1 709 ( 709 n); score: 0.952 MATCH C10HBa0111D09.1- SGN-E369759- 0.952 721 1.004 C PGS_C10HBa0111D09.1-_SGN-E369759- (102708 101988) Alignment (genomic DNA sequence = upper lines): TAAGGTTGAG AATCGAAGAG GATAATAAGG CTGCAGAAAA GAGGTCACGT GGTAATTCAG 102649 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAGGTTGAG AATCGAAGAG GATAATAAGG CTGCAGAAAA GAGGTCACGT GGTAATTCAG 60 CAATATCTGG AGTAAATTTT GTTGAAGAAA ATTCCACAAA ATTAAAGAAA AGAAAGAAAG 102589 |||||||||| |||||||||| ||||||||| |||||||||| ||| |||||| |||||||||| CAATATCTGG AGTAAATTTT GTTGAAGAAG ATTCCACAAA ATTCAAGAAA AGAAAGAAAG 120 CATCT-GTCC AAAAAGCAAT CCTCCTAAGA AGAAATTCAA TGGAAACTGC TTTAATTGTG 102530 ||||| |||| |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCTGGTCC AAAACGCAAT CCTCCTAAGA AGAAATTCAA TGGAAACTGC TTTAATTGTG 180 GTAAACATGG TCATAGGGCT AATGAATGCC GGGGTTCTAA GAAGGACAAG AAAAAGAAGG 102470 |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| GTAAACATGG TCATAGGGCT AATGAATGCC GGGGTCCTAA GAAGGACAAG AAAAAGAAGG 240 ATCAAGCAAA CTTGGCTGAA TCCAAAGGAG AAATGGACGA TCTCTGTGCA ATGCTTTCAG 102410 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAAGCAAA CTTGGCTGAA TCCAAAGGAG AAATGGACGA TCTCTGTGCA ATGCTTTCAG 300 AATGTAACTT GGTTGGAAAT CCAAGAGAAT GGTCGATAGA TTCTGGGTGT ATCCAAAGGA 102350 |||||||||| |||||||||| |||||||||| ||| |||||| |||| |||| || AATGTAACTT GGTTGGAAAT CCAAGAGAAT GGTGGATAGA TTCT-GGTG- --CC------ 350 GAAATGGACG ATCTCTGTGC CAACAAAGAA TTATTTTCAT CATATACTCC AGCACTTACA 102290 || | | || | ||||| |||||||||| |||||||||| ||||||||| |||||||||| -TCAT-G-CC ATGTTTGTGC CAACAAAGAA TTATTTTCAT CATATACTCT AGCACTTACA 407 GATGAAAAAT TATTTATGGA AAACTCCGTT GTTGCAAAGG TGGAAGGAAC TGGCAAAGTC 102230 |||||||||| ||||||||| |||||||| | |||||||||| |||||||||| |||||||||| GATGAAAAAT TATTTATGGC AAACTCCGCT GTTGCAAAGG TGGAAGGAAC TGGCAAAGTC 467 CTATTAAAGA TGACATCAGG CAAGGTGGTG ACTTTGAATA GGGTCTCATA TGTTCCAGAA 102170 |||||||||| |||||||||| |||||| ||| |||||||||| ||||||||| |||||||||| CTATTAAAGA TGACATCAGG CAAGGTAGTG ACTTTGAATA TGGTCTCATA TGTTCCAGAA 527 TTGAGAAAGA ATTTAGTTTC AATTCCAGTT CTGACCAAGA ATGGATTTAA ATGTGTATTT 102110 |||||||| | |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| TTGAGAAATA ATTTAGTTTC AATTCCAATT CTGACCAAGA ATGGATTTAA ATGTGTATTT 587 GTTTCTGATA AAGTAGTAGT AAGCAAAAAT GATATGTATG TAGGAAAAGG CTACCTTAGT 102050 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| GTTTCTGATA AAGTAGTAGT AAGCAAAAAT GATATGTATG TAGGAAAAGA CTACCTTAGT 647 GATGGCCTTT TCAAACTCAA TGTAATTGCA GTTAATATGA ATAAAGATTT TGCTTCTTCT 101990 |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| GATGGCCTTT TCAAACTCAA TGTAATTGCA GTTGATATGA ATAAAGATTT TGCTTCTTCT 707 TA 101988 || TA 709 hqPGS_C10HBa0111D09.1-_SGN-E369759- (102708 101988) ******************************************************************************** EST sequence 15 -strand 585 n (File: SGN-E395006-) 1 AAGAAATTCA ATGGAAACTG CTTTAATTGT GGTAAACATG GTCATAGGGG TAATGAATGC 61 CGGGGTCCTA AGAAGGACAA GAAAAAGAAG GATCAAGCAA ACTTGGCTGA ATCCAAAGGA 121 GAAATGGACG ATCTCTGTGC AATGCTTTCA GAATGTAACT TGGTTGGAAA TCCAAGAGAA 181 TGGTGGATAG ATTCTGGTGC CTCATGCCAT GTTTGTGCCA ACAAAGAATT ATTTTCATCA 241 TATACTCTAG CACTTACAGA TGAAAAATTA TTTATGGCAA ACTCCGCTGT TGCAAAGGTG 301 GAAGGAACTG GCAAAGTCCT ATTAAAGATG ACATCAGGCA AGGTAGTGAC TTTGAATATG 361 GTCTCATATG TTCCAGAATT GAGAAATAAT TTAGTTTCAA TTCCAATTCT GACCAAGAAT 421 GGATTTAAAT GTGTATTTGT TTTTGATAAA GTAGTAGTAA GCAAAAATGA TATGTATGTA 481 GGAAAAGACT ACCTTAGTGA TGGCCTTTTC AAACTCAATG TAATTGCAGT TGATATGAAT 541 AAAGATTTTG CTTCTTTTTA AAAAAAAAAA AAAAAAAAAA CTCGA Predicted gene structure (within gDNA segment 103170 to 101102): Exon 1 102560 101988 ( 573 n); cDNA 1 560 ( 560 n); score: 0.944 PPA cDNA 561 581 MATCH C10HBa0111D09.1- SGN-E395006- 0.944 573 0.979 C PGS_C10HBa0111D09.1-_SGN-E395006- (102560 101988) Alignment (genomic DNA sequence = upper lines): AAGAAATTCA ATGGAAACTG CTTTAATTGT GGTAAACATG GTCATAGGGC TAATGAATGC 102501 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| AAGAAATTCA ATGGAAACTG CTTTAATTGT GGTAAACATG GTCATAGGGG TAATGAATGC 60 CGGGGTTCTA AGAAGGACAA GAAAAAGAAG GATCAAGCAA ACTTGGCTGA ATCCAAAGGA 102441 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGGGTCCTA AGAAGGACAA GAAAAAGAAG GATCAAGCAA ACTTGGCTGA ATCCAAAGGA 120 GAAATGGACG ATCTCTGTGC AATGCTTTCA GAATGTAACT TGGTTGGAAA TCCAAGAGAA 102381 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAATGGACG ATCTCTGTGC AATGCTTTCA GAATGTAACT TGGTTGGAAA TCCAAGAGAA 180 TGGTCGATAG ATTCTGGGTG TATCCAAAGG AGAAATGGAC GATCTCTGTG CCAACAAAGA 102321 |||| ||||| ||||| |||| || || | | || | |||| |||||||||| TGGTGGATAG ATTCT-GGTG ---CC----- --TCAT-G-C CATGTTTGTG CCAACAAAGA 227 ATTATTTTCA TCATATACTC CAGCACTTAC AGATGAAAAA TTATTTATGG AAAACTCCGT 102261 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||| ATTATTTTCA TCATATACTC TAGCACTTAC AGATGAAAAA TTATTTATGG CAAACTCCGC 287 TGTTGCAAAG GTGGAAGGAA CTGGCAAAGT CCTATTAAAG ATGACATCAG GCAAGGTGGT 102201 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || TGTTGCAAAG GTGGAAGGAA CTGGCAAAGT CCTATTAAAG ATGACATCAG GCAAGGTAGT 347 GACTTTGAAT AGGGTCTCAT ATGTTCCAGA ATTGAGAAAG AATTTAGTTT CAATTCCAGT 102141 |||||||||| | |||||||| |||||||||| ||||||||| |||||||||| |||||||| | GACTTTGAAT ATGGTCTCAT ATGTTCCAGA ATTGAGAAAT AATTTAGTTT CAATTCCAAT 407 TCTGACCAAG AATGGATTTA AATGTGTATT TGTTTCTGAT AAAGTAGTAG TAAGCAAAAA 102081 |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| TCTGACCAAG AATGGATTTA AATGTGTATT TGTTTTTGAT AAAGTAGTAG TAAGCAAAAA 467 TGATATGTAT GTAGGAAAAG GCTACCTTAG TGATGGCCTT TTCAAACTCA ATGTAATTGC 102021 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| TGATATGTAT GTAGGAAAAG ACTACCTTAG TGATGGCCTT TTCAAACTCA ATGTAATTGC 527 AGTTAATATG AATAAAGATT TTGCTTCTTC TTA 101988 |||| ||||| |||||||||| ||||||||| ||| AGTTGATATG AATAAAGATT TTGCTTCTTT TTA 560 hqPGS_C10HBa0111D09.1-_SGN-E395006- (102560 101988) ******************************************************************************** EST sequence 10 -strand 562 n (File: SGN-E250407-) 1 AATTGTGGTA AACATGGTCA TAGGGCTAAT GAAAGCCGGG GTCTTAAGAA GGACAAGATA 61 AAGAAGGATC AAGCAAACTT GGGTGAATCC AAAGGAGAAA TGGACGATCT CTGTGCAATG 121 CTTTCAGAAT GTAACTTGGT TGGAAATCCA AGAGAATGGT GGATAGATTC TGGTGCCTCA 181 TGCCATGTTT GTGCCAACAA AGAATTATTT TCATCATATA CTCTAGCAGT TACAGATGAG 241 AAATTATTTA TGGCCAACTC CGCTGTTGCA AAGGTGTAAG GAACTGGCAA AGTCCTATTA 301 AAGATGACAT CAGGCAAGGT AGTGACTTTG AATATGGTCT CATATGTTCC AGAATTGAGA 361 AATAATTTAG TTTCAATTCC AATTCTGACC AAGAATGGAT TTAAATGTGT ATTTGTTTCT 421 GATAAAGTAG TAGTAAGCAA AAATGATATG TATGTAGGAA AAGACTACCT TAGTGATGGC 481 CTTTTCAAAC TCAATGTAAT TGCAGTTCAT ATGAATAAAG ATTTTGCTTC TTATTAAAAA 541 AAAAAAAAAA AAAAGACTCG AC Predicted gene structure (within gDNA segment 103146 to 101092): Exon 1 102536 101988 ( 549 n); cDNA 1 536 ( 536 n); score: 0.931 PPA cDNA 537 556 MATCH C10HBa0111D09.1- SGN-E250407- 0.931 549 0.977 C PGS_C10HBa0111D09.1-_SGN-E250407- (102536 101988) Alignment (genomic DNA sequence = upper lines): AATTGTGGTA AACATGGTCA TAGGGCTAAT GAATGCCGGG GTTCTAAGAA GGACAAGAAA 102477 |||||||||| |||||||||| |||||||||| ||| |||||| || |||||| |||||||| | AATTGTGGTA AACATGGTCA TAGGGCTAAT GAAAGCCGGG GTCTTAAGAA GGACAAGATA 60 AAGAAGGATC AAGCAAACTT GGCTGAATCC AAAGGAGAAA TGGACGATCT CTGTGCAATG 102417 |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| AAGAAGGATC AAGCAAACTT GGGTGAATCC AAAGGAGAAA TGGACGATCT CTGTGCAATG 120 CTTTCAGAAT GTAACTTGGT TGGAAATCCA AGAGAATGGT CGATAGATTC TGGGTGTATC 102357 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| | |||| | CTTTCAGAAT GTAACTTGGT TGGAAATCCA AGAGAATGGT GGATAGATTC T-GGTG---C 176 CAAAGGAGAA ATGGACGATC TCTGTGCCAA CAAAGAATTA TTTTCATCAT ATACTCCAGC 102297 | || | | || | |||||||| |||||||||| |||||||||| |||||| ||| C-------TC AT-G-CCATG TTTGTGCCAA CAAAGAATTA TTTTCATCAT ATACTCTAGC 227 ACTTACAGAT GAAAAATTAT TTATGGAAAA CTCCGTTGTT GCAAAGGTGG AAGGAACTGG 102237 | |||||||| || ||||||| |||||| || ||||| |||| ||||||||| |||||||||| AGTTACAGAT GAGAAATTAT TTATGGCCAA CTCCGCTGTT GCAAAGGTGT AAGGAACTGG 287 CAAAGTCCTA TTAAAGATGA CATCAGGCAA GGTGGTGACT TTGAATAGGG TCTCATATGT 102177 |||||||||| |||||||||| |||||||||| ||| |||||| ||||||| || |||||||||| CAAAGTCCTA TTAAAGATGA CATCAGGCAA GGTAGTGACT TTGAATATGG TCTCATATGT 347 TCCAGAATTG AGAAAGAATT TAGTTTCAAT TCCAGTTCTG ACCAAGAATG GATTTAAATG 102117 |||||||||| ||||| |||| |||||||||| |||| ||||| |||||||||| |||||||||| TCCAGAATTG AGAAATAATT TAGTTTCAAT TCCAATTCTG ACCAAGAATG GATTTAAATG 407 TGTATTTGTT TCTGATAAAG TAGTAGTAAG CAAAAATGAT ATGTATGTAG GAAAAGGCTA 102057 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| TGTATTTGTT TCTGATAAAG TAGTAGTAAG CAAAAATGAT ATGTATGTAG GAAAAGACTA 467 CCTTAGTGAT GGCCTTTTCA AACTCAATGT AATTGCAGTT AATATGAATA AAGATTTTGC 101997 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| CCTTAGTGAT GGCCTTTTCA AACTCAATGT AATTGCAGTT CATATGAATA AAGATTTTGC 527 TTCTTCTTA 101988 ||||| ||| TTCTTATTA 536 hqPGS_C10HBa0111D09.1-_SGN-E250407- (102536 101988) ******************************************************************************** EST sequence 14 -strand 524 n (File: SGN-E375520-) 1 ATGCCGGGGT CCTAAGAAGG ACAAGAAAAA GAAGGATCAA GCAAACTTGG CTGAATCCAA 61 AGGAGAAATG GACGATCTCT GTGCAATGCT TTCAGAATGT AACTTGGTTG GAAATCCAAG 121 AGAATGGTGG ATAGATTTTG GTGCCTCATG CCATGTTTGT GCCAACAAAG AATTATTTTC 181 ATCATATACT TTAGCACTTA CAGATGAAAA ATTATTTATG GCAAACTCCG CTGTTGCAAA 241 GGTGGAAGGA ACTGGCAAAG TCCTATTAAA GATGACATCA GGCAAGGTAG TGACTTTGAA 301 TATGGTTTCA TATGTTCCAG AATTGAGAAA TAATTTAGTT TCAATTCCAA TTTTGACCAA 361 GAATGGATTT AAATGTGTAT TTGTTTTTGA TAAAGTAGTA GTAAGCAAAA ATGATATGTA 421 TGTAGGAAAA GACTACCTTA GTGATGGCCT TTTCAAACTC AATGTAATTG CAGTTGATAT 481 GAATAAAGAT TTTGCTTTTT TTTAAAAAAA AAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 103213 to 101125): Exon 1 102504 101988 ( 517 n); cDNA 1 504 ( 504 n); score: 0.930 PPA cDNA 505 524 MATCH C10HBa0111D09.1- SGN-E375520- 0.930 517 0.987 C PGS_C10HBa0111D09.1-_SGN-E375520- (102504 101988) Alignment (genomic DNA sequence = upper lines): ATGCCGGGGT TCTAAGAAGG ACAAGAAAAA GAAGGATCAA GCAAACTTGG CTGAATCCAA 102445 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCCGGGGT CCTAAGAAGG ACAAGAAAAA GAAGGATCAA GCAAACTTGG CTGAATCCAA 60 AGGAGAAATG GACGATCTCT GTGCAATGCT TTCAGAATGT AACTTGGTTG GAAATCCAAG 102385 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAGAAATG GACGATCTCT GTGCAATGCT TTCAGAATGT AACTTGGTTG GAAATCCAAG 120 AGAATGGTCG ATAGATTCTG GGTGTATCCA AAGGAGAAAT GGACGATCTC TGTGCCAACA 102325 |||||||| | ||||||| | |||| || || | | || | |||||||||| AGAATGGTGG ATAGATT-TT GGTG---CC- ------TCAT -G-CCATGTT TGTGCCAACA 167 AAGAATTATT TTCATCATAT ACTCCAGCAC TTACAGATGA AAAATTATTT ATGGAAAACT 102265 |||||||||| |||||||||| ||| ||||| |||||||||| |||||||||| |||| ||||| AAGAATTATT TTCATCATAT ACTTTAGCAC TTACAGATGA AAAATTATTT ATGGCAAACT 227 CCGTTGTTGC AAAGGTGGAA GGAACTGGCA AAGTCCTATT AAAGATGACA TCAGGCAAGG 102205 ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGCTGTTGC AAAGGTGGAA GGAACTGGCA AAGTCCTATT AAAGATGACA TCAGGCAAGG 287 TGGTGACTTT GAATAGGGTC TCATATGTTC CAGAATTGAG AAAGAATTTA GTTTCAATTC 102145 | |||||||| ||||| ||| |||||||||| |||||||||| ||| |||||| |||||||||| TAGTGACTTT GAATATGGTT TCATATGTTC CAGAATTGAG AAATAATTTA GTTTCAATTC 347 CAGTTCTGAC CAAGAATGGA TTTAAATGTG TATTTGTTTC TGATAAAGTA GTAGTAAGCA 102085 || || |||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| CAATTTTGAC CAAGAATGGA TTTAAATGTG TATTTGTTTT TGATAAAGTA GTAGTAAGCA 407 AAAATGATAT GTATGTAGGA AAAGGCTACC TTAGTGATGG CCTTTTCAAA CTCAATGTAA 102025 |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| AAAATGATAT GTATGTAGGA AAAGACTACC TTAGTGATGG CCTTTTCAAA CTCAATGTAA 467 TTGCAGTTAA TATGAATAAA GATTTTGCTT CTTCTTA 101988 |||||||| | |||||||||| |||||||||| || ||| TTGCAGTTGA TATGAATAAA GATTTTGCTT TTTTTTA 504 hqPGS_C10HBa0111D09.1-_SGN-E375520- (102504 101988) ******************************************************************************** EST sequence 16 +strand 236 n (File: SGN-E398572+) 1 TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT TTTTTTAAAA AAAAAGCAAA ATCTTTATTC 61 ATATCAACTG CAATTACATT GAGTTTGAAA AGGCCATCCC CAAGGTAGTC TTTTCCTACA 121 TACATATCAT TTTTGCTTAC TACTACTTTA TCAAAAACAA AAACCCCTTT AAATCCATTC 181 TTGGTCAAAA TTGGAATTGA AACTAAATTA CTTCCCAAAT CGGGAACAAA TAAAAC Predicted gene structure (within gDNA segment 100965 to 103238): Exon 1 101995 102187 ( 193 n); cDNA 44 236 ( 193 n); score: 0.907 PPA cDNA 36 1 MATCH C10HBa0111D09.1+ SGN-E398572+ 0.907 193 0.818 C PGS_C10HBa0111D09.1+_SGN-E398572+ (101995 102187) Alignment (genomic DNA sequence = upper lines): AAGCAAAATC TTTATTCATA TTAACTGCAA TTACATTGAG TTTGAAAAGG CCATCACTAA 102054 |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| ||||| | || AAGCAAAATC TTTATTCATA TCAACTGCAA TTACATTGAG TTTGAAAAGG CCATCCCCAA 103 GGTAGCCTTT TCCTACATAC ATATCATTTT TGCTTACTAC TACTTTATCA GAAACAAATA 102114 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| | GGTAGTCTTT TCCTACATAC ATATCATTTT TGCTTACTAC TACTTTATCA AAAACAAAAA 163 CACATTTAAA TCCATTCTTG GTCAGAACTG GAATTGAAAC TAAATTCTTT CTCAATTCTG 102174 | | |||||| |||||||||| |||| || || |||||||||| |||||| || | ||| || | CCCCTTTAAA TCCATTCTTG GTCAAAATTG GAATTGAAAC TAAATTACTT CCCAAATCGG 223 GAACATATGA GAC 102187 ||||| || | || GAACAAATAA AAC 236 hqPGS_C10HBa0111D09.1+_SGN-E398572+ (101995 102187) ******************************************************************************** EST sequence 8 +strand 489 n (File: SGN-E553348+) 1 CAGGCGGAGT TTCATCTGAC ATAACAGGAA CATTCTCATT AATGAACTTC TGCAGACTCA 61 ACGTAGTGAG ATAGAAGGAC ACCTTTTGTT GCCATCTCTT AAAGTCAACT CCAAAAAATT 121 TTGCAGGTTT CTCAGCCGAC GCTAAGGCAA TATTTGAACG ATAATGTGCA ACCGATGATG 181 TTGCAGCACT TACTGTTGCA GCACTTACTG TTCCAGCATT TGTTTGACAT GAATATGTCA 241 TTTTTCTTTT TTCTGTTACA AATGGAATAT AAGTTAAGTA TTTGAAATAC TAACAGTAAA 301 GAACAAATCT TTACACAAAT TGTTTCTGAT TTAATGATAA TGTTTTTATG TTCTTTTAAT 361 CGTTAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAACCTGGGG 421 GGGGGGGGGG GGCCCCATTT CCCCCCAAGG GGGGGGTAAA AAAAATTTCG GGGGCCCTTT 481 TTTAAAAAA Predicted gene structure (within gDNA segment 102548 to 105793): Exon 1 103184 103529 ( 346 n); cDNA 1 365 ( 365 n); score: 0.790 Intron 1 103530 103669 ( 140 n); Pd: 0.000 (s: 0.92), Pa: 0.926 (s: 0.65) Exon 2 103670 103709 ( 40 n); cDNA 366 405 ( 40 n); score: 0.650 MATCH C10HBa0111D09.1+ SGN-E553348+ 0.790 386 0.789 C PGS_C10HBa0111D09.1+_SGN-E553348+ (103184 103529,103670 103709) Alignment (genomic DNA sequence = upper lines): CAGCCGGAGT TTCATCTGAC ATAACAGGAA CATTCTCATT GATGAACTTC TGCAGACTCA 103243 ||| |||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| CAGGCGGAGT TTCATCTGAC ATAACAGGAA CATTCTCATT AATGAACTTC TGCAGACTCA 60 ACGTAGTGAG ATAGAAGAAC ATCTTTTGCT GCCATCTCTT AAAGTCGACT CCAAAAAACT 103303 |||||||||| ||||||| || | |||||| | |||||||||| |||||| ||| |||||||| | ACGTAGTGAG ATAGAAGGAC ACCTTTTGTT GCCATCTCTT AAAGTCAACT CCAAAAAATT 120 TTGCAGGTTT CTCAGCCGGT GCTAAGGCAG CATTTGAATG ATTATGTGCA ACCG-T--TG 103360 |||||||||| |||||||| ||||||||| ||||||| | || ||||||| |||| | || TTGCAGGTTT CTCAGCCGAC GCTAAGGCAA TATTTGAACG ATAATGTGCA ACCGATGATG 180 TT---G---- T--TG---CA GCACTTACTG TTCCAGCATT TGTTTGACTT GAATTAGTCA 103408 || | | || || |||||||||| |||||||||| |||||||| | |||| |||| TTGCAGCACT TACTGTTGCA GCACTTACTG TTCCAGCATT TGTTTGACAT GAATATGTCA 240 ---TT-TTTT TTCTGTCACA AATGGCAGAT AAATTAAGTA TTTAAAATAC TAACAGTAAA 103464 || |||| |||||| ||| ||||| | || || ||||||| ||| |||||| |||||||||| TTTTTCTTTT TTCTGTTACA AATGGAATAT AAGTTAAGTA TTTGAAATAC TAACAGTAAA 300 GAACAAATCT TTACACAAAC TGTTTTTGAT TTAACGATAA AGTTTTTATG TTCTTTTAAT 103524 |||||||||| ||||||||| ||||| |||| |||| ||||| ||||||||| |||||||||| GAACAAATCT TTACACAAAT TGTTTCTGAT TTAATGATAA TGTTTTTATG TTCTTTTAAT 360 CGTTAATCGA ATGAATTTTA AAAATTCAAG CAGAGTAGAA AACCATAAAG GTTTTAATCT 103584 ||||| CGTTA..... .......... .......... .......... .......... .......... 365 CCAGAAACCT CAAATACAGA AACTGTTTAA ATTTCTTAAG ATTGTTCTTC TTACAATAAC 103644 .......... .......... .......... .......... .......... .......... 365 TTGTATTTAT GAAGTTAATG AACAGAAACA GAAACAAGAT GAAGCAGAAA AAATTTAAAA 103704 ||| | ||| || | || | ||| ||| |||| .......... .......... .....AAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA 400 TAGAA 103709 | || AAAAA 405 hqPGS_C10HBa0111D09.1+_SGN-E553348+ (103184 103529,103670 103709) ******************************************************************************** EST sequence 97 -strand 462 n (File: SGN-E236009-) 1 AACGTAGTGA GATAGAAGAA CATCTTTTGT TGTCATCTCT TAAAGTCGAC TCCAGAAGAA 61 TTATGTGCAA CCGTTGTTGT TGCAGCACTT ACTGTTCCAG CATTTGTTTG ACTTGAATTA 121 GTCATTTTTT TCTGTCACAA ATGGCAGATA AATTAAGTAT TTAAAATATT AACAATAAAA 181 AACAAATCTT TACACAAACT GTTTCTGATT TAACGATAAA GTTTTTATGT TCTTTTAATC 241 GTTAATCGAA TAAATTTTAA AAATTCAAGC AGAATAGAAA ACCAACCATA AAGGTTTTAA 301 TCTCCAGAAA CCTCAAATAC AAAAACTGTT AAATTTCTTA AGATTGTTAT AAAATTGTTA 361 TTCTTACAAT AACTTGTATT TATGAAGTTA ATGAATAGAA ATAGAAACAA GATGAAGCAG 421 AAAAAATTTA AAACAGAAGA ATTAATCCGA GTCCACAGAA AC Predicted gene structure (within gDNA segment 102144 to 104387): Exon 1 103243 103301 ( 59 n); cDNA 1 59 ( 59 n); score: 0.932 Intron 1 103302 103343 ( 42 n); Pd: 0.000 (s: 0.92), Pa: 0.000 (s: 1.00) Exon 2 103344 103733 ( 390 n); cDNA 60 462 ( 403 n); score: 0.869 MATCH C10HBa0111D09.1+ SGN-E236009- 0.878 449 0.972 C PGS_C10HBa0111D09.1+_SGN-E236009- (103243 103301,103344 103733) Alignment (genomic DNA sequence = upper lines): AACGTAGTGA GATAGAAGAA CATCTTTTGC TGCCATCTCT TAAAGTCGAC TCCAAAAAAC 103302 |||||||||| |||||||||| ||||||||| || ||||||| |||||||||| |||| || | AACGTAGTGA GATAGAAGAA CATCTTTTGT TGTCATCTCT TAAAGTCGAC TCCAGAAGA. 59 TTTGCAGGTT TCTCAGCCGG TGCTAAGGCA GCATTTGAAT GATTATGTGC AACCGTTGTT 103362 ||||||||| |||||||||| .......... .......... .......... .......... .ATTATGTGC AACCGTTGTT 78 GTTGCAGCAC TTACTGTTCC AGCATTTGTT TGACTTGAAT TAGTCATTTT TTTTCTGTCA 103422 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| GTTGCAGCAC TTACTGTTCC AGCATTTGTT TGACTTGAAT TAGTCA-TTT TTTTCTGTCA 137 CAAATGGCAG ATAAATTAAG TATTTAAAAT ACTAACAGTA AAGAACAAAT CTTTACACAA 103482 |||||||||| |||||||||| |||||||||| | ||||| || || ||||||| |||||||||| CAAATGGCAG ATAAATTAAG TATTTAAAAT ATTAACAATA AAAAACAAAT CTTTACACAA 197 ACTGTTTTTG ATTTAACGAT AAAGTTTTTA TGTTCTTTTA ATCGTTAATC GAATGAATTT 103542 ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| ACTGTTTCTG ATTTAACGAT AAAGTTTTTA TGTTCTTTTA ATCGTTAATC GAATAAATTT 257 TAAAAATTCA AGCAGAGTAG --AA--AACC ATAAAGGTTT TAATCTCCAG AAACCTCAAA 103598 |||||||||| |||||| ||| || |||| |||||||||| |||||||||| |||||||||| TAAAAATTCA AGCAGAATAG AAAACCAACC ATAAAGGTTT TAATCTCCAG AAACCTCAAA 317 TACAGAAACT G-------T- TTAA-ATT-T CTTAAGATTG TTCTTCTTAC AATAACTTGT 103648 |||| ||||| | | |||| ||| | ||| |||| || ||||||| |||||||||| TACAAAAACT GTTAAATTTC TTAAGATTGT TATAAAATTG TTATTCTTAC AATAACTTGT 377 ATTTATGAAG TTAATGAACA GAAACAGAAA CAAGATGAAG CAGAAAAAAT TTAAAATAGA 103708 |||||||||| |||||||| | |||| ||||| |||||||||| |||||||||| |||||| ||| ATTTATGAAG TTAATGAATA GAAATAGAAA CAAGATGAAG CAGAAAAAAT TTAAAACAGA 437 AGAATTAATC CGAGTCCACT GAAAC 103733 |||||||||| ||||||||| ||||| AGAATTAATC CGAGTCCACA GAAAC 462 hqPGS_C10HBa0111D09.1+_SGN-E236009- (103243 103301,103344 103733) ******************************************************************************** EST sequence 80 -strand 304 n (File: SGN-E396239-) 1 AAGAACATTT TTTGATGCCA TCTTTAAAAG TCGACTCCAG AAAACTTTGC AGGTTTCTCA 61 GCCGGTGCTA AGGCAGCATG TGAACGATTA TGTGCAACCA TTGTTGTTGC AGCACTTACT 121 GTTCCAGCAT TTGTTTGACT TGAATTAGTC TTTTTTTTCT GTCACAATTG GCAGATAAAT 181 TAAGTATTTA ACTTAATTGA ATATATATTG TTACCTTGTA ACCATGTTAT GAATTTTGAT 241 CAAGAATAGA GCTTTGTGGT AAAACAAGGA ACCTTCCTTT AAAAAAAAAA AAAAAAAAAA 301 AAAA Predicted gene structure (within gDNA segment 102288 to 105179): Exon 1 103258 103449 ( 192 n); cDNA 1 191 ( 191 n); score: 0.948 Intron 1 103450 104493 (1044 n); Pd: 0.000 (s: 0.96), Pa: 0.000 (s: 0) Exon 2 104494 104525 ( 32 n); cDNA 192 223 ( 32 n); score: 0.719 PPA cDNA 281 304 MATCH C10HBa0111D09.1+ SGN-E396239- 0.948 224 0.737 C PGS_C10HBa0111D09.1+_SGN-E396239- (103258 103449,104494 104525) Alignment (genomic DNA sequence = upper lines): AAGAACATCT TTTGCTGCCA TCTCTTAAAG TCGACTCCAA AAAACTTTGC AGGTTTCTCA 103317 |||||||| | |||| ||||| ||| | |||| ||||||||| |||||||||| |||||||||| AAGAACATTT TTTGATGCCA TCTTTAAAAG TCGACTCCAG AAAACTTTGC AGGTTTCTCA 60 GCCGGTGCTA AGGCAGCATT TGAATGATTA TGTGCAACCG TTGTTGTTGC AGCACTTACT 103377 |||||||||| ||||||||| |||| ||||| ||||||||| |||||||||| |||||||||| GCCGGTGCTA AGGCAGCATG TGAACGATTA TGTGCAACCA TTGTTGTTGC AGCACTTACT 120 GTTCCAGCAT TTGTTTGACT TGAATTAGTC ATTTTTTTTC TGTCACAAAT GGCAGATAAA 103437 |||||||||| |||||||||| |||||||||| ||||||||| |||||||| | |||||||||| GTTCCAGCAT TTGTTTGACT TGAATTAGTC -TTTTTTTTC TGTCACAATT GGCAGATAAA 179 TTAAGTATTT AAAATACTAA CAGTAAAGAA CAAATCTTTA CACAAACTGT TTTTGATTTA 103497 |||||||||| || TTAAGTATTT AA........ .......... .......... .......... .......... 191 ACGATAAAGT TTTTATGTTC TTTTAATCGT TAATCGAATG AATTTTAAAA ATTCAAGCAG 103557 .......... .......... .......... .......... .......... .......... 191 AGTAGAAAAC CATAAAGGTT TTAATCTCCA GAAACCTCAA ATACAGAAAC TGTTTAAATT 103617 .......... .......... .......... .......... .......... .......... 191 TCTTAAGATT GTTCTTCTTA CAATAACTTG TATTTATGAA GTTAATGAAC AGAAACAGAA 103677 .......... .......... .......... .......... .......... .......... 191 ACAAGATGAA GCAGAAAAAA TTTAAAATAG AAGAATTAAT CCGAGTCCAC TGAAACTATT 103737 .......... .......... .......... .......... .......... .......... 191 GTGTGTCCTT AAGAAATTTA ATCCCTCACT GTACCCAAGG TTATGGATTA ATTTCTCCCA 103797 .......... .......... .......... .......... .......... .......... 191 AGATAAAACA GATTAAACCT GTTAAATAAA TAGTGGTACC TCAAACTTCT TTAACTTCAA 103857 .......... .......... .......... .......... .......... .......... 191 CGAACTGTAA ACAGCAACAA GTCACACTGA CTCAGTCGAT CGACACTTTG ATTTTATTTG 103917 .......... .......... .......... .......... .......... .......... 191 AGAGAAAAAT AAATGCAGAG AAAGAAAAAA TCTTCAGTGA TTAAAAAATC AAAAATTGAC 103977 .......... .......... .......... .......... .......... .......... 191 TTCCTTTTAT AGCCATTTTC AGCAAGAAAC ATGTGTGTTC AGTGAAATCT ATTCAGACCC 104037 .......... .......... .......... .......... .......... .......... 191 ATTTTATCCA GAAAGTTGTG TCTTTTGGAA AAAATAACAA CTTTTCGAGA AATTGTGTCT 104097 .......... .......... .......... .......... .......... .......... 191 GTTAGGAAAA TAACTACTTT TTGAAAAGTA ACGACTTTTC GAAAAGTAAC GACTTTTCGA 104157 .......... .......... .......... .......... .......... .......... 191 AAAGAGTAAC AACTTTTCAG AATGTTACCG TTACCTGCAA ATTTATAAGA AATGACTTTT 104217 .......... .......... .......... .......... .......... .......... 191 CATTTGCACT TTGCAAATGA CTTTTCATTT TCCCTCCAAA GTAGTTCCCT CACTTGTCAT 104277 .......... .......... .......... .......... .......... .......... 191 ATTCTCTCTT TTCTTTTCCC ATTCACACTT GCTAAAACCC AACACACCCA ACATAACATT 104337 .......... .......... .......... .......... .......... .......... 191 CAATCACGAA TGAATAAATA TACATAAAAC TAACCTATAT ATGAATAACA ACAACCATAA 104397 .......... .......... .......... .......... .......... .......... 191 AACTTAGAGG AATAAATGGT ACCCTTTTAA TTAATGCACT CACGCCTACA ATGTATCTCC 104457 .......... .......... .......... .......... .......... .......... 191 TAATTCAAAG TCTCACGATT ATGCAATGAT GACTACCTCA ATTGTTTTTC TTTTGTTTTC 104517 || | |||| | | | ||||| | .......... .......... .......... ......CTTA ATTGAATATA TATTGTTACC 215 TAGTAACC 104525 | |||||| TTGTAACC 223 hqPGS_C10HBa0111D09.1+_SGN-E396239- (103258 103449,104494 104525) ******************************************************************************** EST sequence 57 -strand 611 n (File: SGN-E253427-) 1 ACTCAAAATA TAATTTTTAC ACAAAAAATC TGAGTGTGTC CATGCTTCTG TTACCAAGAA 61 TCGTTCATCA GCCGAAGTTT CATCTGACAT AACAGGAACA TTCTCATTGA TGAACTTCTG 121 CAGACTCAAC GTAGTGAGAT AGAAGAACAT CTTTTGCTGC CATCTCTTAA AGTCGACTCC 181 AGAAAACTTT GCAGGTTTCT CAGCCGGTGC TAAGGCAGCA TGTGAACGAT TATGTGCAAC 241 CATTGTTGTT GCAGCACTTA CTGTTCCAGC ATTTGTTTGA CTTGAATTAG TCTTTTTTTT 301 CTGTCACAAT TGGCAGATAA ATTAAGTATT TAAAATACTA ACAGTAAAGA GCAAATCTTT 361 ACACAACCTG TTTCTGATTT AACGATAAAG TTTTTATGTT TTTTTAATCG TTAATCGAAT 421 GATTTTAAAA ATTCAAGTAG AGTAGAAAAC CATAAAGGTT TTAATCTCCA GAAACCTCAA 481 ACACAGAAAC TGTATAAATT TTCTTAAGAT TGTTACTCTT ATAATAACTT TTATTTATAA 541 AGTTAATAAC CAGAAACAGA AATAAGATGA AGCAGAAAAT AATATAGAAT ACAAGAATTA 601 ATCCGAGTCC A Predicted gene structure (within gDNA segment 102227 to 104326): Exon 1 103115 103726 ( 612 n); cDNA 1 611 ( 611 n); score: 0.946 MATCH C10HBa0111D09.1+ SGN-E253427- 0.946 612 1.002 C PGS_C10HBa0111D09.1+_SGN-E253427- (103115 103726) Alignment (genomic DNA sequence = upper lines): ACTCAAAATA TAATTTTTAC ACAAAAAAAT CAGAGTGTGT CCATGCTTCT GTTACCAAGA 103174 |||||||||| |||||||||| || ||||||| | |||||||| |||||||||| |||||||||| ACTCAAAATA TAATTTTTAC AC-AAAAAAT CTGAGTGTGT CCATGCTTCT GTTACCAAGA 59 ATCGTTCATC AGCCGGAGTT TCATCTGACA TAACAGGAAC ATTCTCATTG ATGAACTTCT 103234 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| ATCGTTCATC AGCCGAAGTT TCATCTGACA TAACAGGAAC ATTCTCATTG ATGAACTTCT 119 GCAGACTCAA CGTAGTGAGA TAGAAGAACA TCTTTTGCTG CCATCTCTTA AAGTCGACTC 103294 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGACTCAA CGTAGTGAGA TAGAAGAACA TCTTTTGCTG CCATCTCTTA AAGTCGACTC 179 CAAAAAACTT TGCAGGTTTC TCAGCCGGTG CTAAGGCAGC ATTTGAATGA TTATGTGCAA 103354 || ||||||| |||||||||| |||||||||| |||||||||| || |||| || |||||||||| CAGAAAACTT TGCAGGTTTC TCAGCCGGTG CTAAGGCAGC ATGTGAACGA TTATGTGCAA 239 CCGTTGTTGT TGCAGCACTT ACTGTTCCAG CATTTGTTTG ACTTGAATTA GTCATTTTTT 103414 || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| CCATTGTTGT TGCAGCACTT ACTGTTCCAG CATTTGTTTG ACTTGAATTA GTC-TTTTTT 298 TTCTGTCACA AATGGCAGAT AAATTAAGTA TTTAAAATAC TAACAGTAAA GAACAAATCT 103474 |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| || ||||||| TTCTGTCACA ATTGGCAGAT AAATTAAGTA TTTAAAATAC TAACAGTAAA GAGCAAATCT 358 TTACACAAAC TGTTTTTGAT TTAACGATAA AGTTTTTATG TTCTTTTAAT CGTTAATCGA 103534 |||||||| | ||||| |||| |||||||||| |||||||||| || ||||||| |||||||||| TTACACAACC TGTTTCTGAT TTAACGATAA AGTTTTTATG TTTTTTTAAT CGTTAATCGA 418 ATGAATTTTA AAAATTCAAG CAGAGTAGAA AACCATAAAG GTTTTAATCT CCAGAAACCT 103594 ||| |||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| ATG-ATTTTA AAAATTCAAG TAGAGTAGAA AACCATAAAG GTTTTAATCT CCAGAAACCT 477 CAAATACAGA AACTGTTTAA A-TTTCTTAA GATTGTTCTT CTTACAATAA CTTGTATTTA 103653 |||| ||||| |||||| ||| | |||||||| ||||||| | |||| ||||| ||| |||||| CAAACACAGA AACTGTATAA ATTTTCTTAA GATTGTTACT CTTATAATAA CTTTTATTTA 537 TGAAGTTAAT GAACAGAAAC AGAAACAAGA TGAAGCAGAA AA-AATTTAA AATAGAAGAA 103712 | |||||||| | ||||||| ||||| |||| |||||||||| || ||| || |||| ||||| TAAAGTTAAT AACCAGAAAC AGAAATAAGA TGAAGCAGAA AATAATATAG AATACAAGAA 597 TTAATCCGAG TCCA 103726 |||||||||| |||| TTAATCCGAG TCCA 611 hqPGS_C10HBa0111D09.1+_SGN-E253427- (103115 103726) ******************************************************************************** EST sequence 59 -strand 706 n (File: SGN-E261066-) 1 AAAAAATCTG AGTGTGTCCA TGCTTCTGTT ACCAAGAATC GTTCATCAGC CGAAGTTTCA 61 TCTGACATAA CAGGAACATT CTCATTGATG AACTTCTGCA GACTCAACGT AGTGAGATAG 121 AAGAACATCT TTTGCTGCCA TCTCTTAAAG TCGACTCCAG AAATCTTTGC AGGTTTCTCA 181 GCCGGTGCTA AGGCAGCATG TGAACGATTA TGTGCAACCA TTGTTGTTGC AGCACTTACT 241 GTTCCAGCAT TTGTTTGACT TGAATTAGTC TTTTTTTTCT GTCACAATTG GCAGATAAAT 301 TAAGTATTTA AAATACTAAC AGTAAAGAGC AAATCTTTAC ACAACCTGTT TATGATTTAA 361 CGATAAAGTT TTTATGTTTT TTTAATCGTT AATCGAATGA TTTTAAAAAT TCAAGTAGAG 421 TAGAAAACCA TAAAGGTTTT AATCTCCAGA AACCTCAAAC ACAGAAACTG TATAAATTTT 481 CTTAAGATTG TTACTCTTAT AATAACTTTT ATTTATAAAG TTAATAAACA GAAACAGAAA 541 TAAGATGAAG CAGAAAATAA TATAGAATAC AAGAATTAAT CCGAGTCCAC AGAAACTACT 601 ATGTGTCCTT AAGAAATTTA ATTCCCTCAC TGTACCCAAG GTTATGGATT AATTTCTCTC 661 AAGATAAAAC GGATTAAACC TGTTAAAGAA ATAGCGGTAC CTCAAA Predicted gene structure (within gDNA segment 102447 to 104613): Exon 1 103138 103842 ( 705 n); cDNA 1 706 ( 706 n); score: 0.941 MATCH C10HBa0111D09.1+ SGN-E261066- 0.941 705 0.999 C PGS_C10HBa0111D09.1+_SGN-E261066- (103138 103842) Alignment (genomic DNA sequence = upper lines): AAAAAATCAG AGTGTGTCCA TGCTTCTGTT ACCAAGAATC GTTCATCAGC CGGAGTTTCA 103197 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| AAAAAATCTG AGTGTGTCCA TGCTTCTGTT ACCAAGAATC GTTCATCAGC CGAAGTTTCA 60 TCTGACATAA CAGGAACATT CTCATTGATG AACTTCTGCA GACTCAACGT AGTGAGATAG 103257 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGACATAA CAGGAACATT CTCATTGATG AACTTCTGCA GACTCAACGT AGTGAGATAG 120 AAGAACATCT TTTGCTGCCA TCTCTTAAAG TCGACTCCAA AAAACTTTGC AGGTTTCTCA 103317 |||||||||| |||||||||| |||||||||| ||||||||| ||| |||||| |||||||||| AAGAACATCT TTTGCTGCCA TCTCTTAAAG TCGACTCCAG AAATCTTTGC AGGTTTCTCA 180 GCCGGTGCTA AGGCAGCATT TGAATGATTA TGTGCAACCG TTGTTGTTGC AGCACTTACT 103377 |||||||||| ||||||||| |||| ||||| ||||||||| |||||||||| |||||||||| GCCGGTGCTA AGGCAGCATG TGAACGATTA TGTGCAACCA TTGTTGTTGC AGCACTTACT 240 GTTCCAGCAT TTGTTTGACT TGAATTAGTC ATTTTTTTTC TGTCACAAAT GGCAGATAAA 103437 |||||||||| |||||||||| |||||||||| ||||||||| |||||||| | |||||||||| GTTCCAGCAT TTGTTTGACT TGAATTAGTC -TTTTTTTTC TGTCACAATT GGCAGATAAA 299 TTAAGTATTT AAAATACTAA CAGTAAAGAA CAAATCTTTA CACAAACTGT TTTTGATTTA 103497 |||||||||| |||||||||| ||||||||| |||||||||| ||||| |||| || ||||||| TTAAGTATTT AAAATACTAA CAGTAAAGAG CAAATCTTTA CACAACCTGT TTATGATTTA 359 ACGATAAAGT TTTTATGTTC TTTTAATCGT TAATCGAATG AATTTTAAAA ATTCAAGCAG 103557 |||||||||| ||||||||| |||||||||| |||||||||| ||||||||| ||||||| || ACGATAAAGT TTTTATGTTT TTTTAATCGT TAATCGAATG -ATTTTAAAA ATTCAAGTAG 418 AGTAGAAAAC CATAAAGGTT TTAATCTCCA GAAACCTCAA ATACAGAAAC TGTTTAAA-T 103616 |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| ||| |||| | AGTAGAAAAC CATAAAGGTT TTAATCTCCA GAAACCTCAA ACACAGAAAC TGTATAAATT 478 TTCTTAAGAT TGTTCTTCTT ACAATAACTT GTATTTATGA AGTTAATGAA CAGAAACAGA 103676 |||||||||| |||| |||| | |||||||| ||||||| | ||||||| || |||||||||| TTCTTAAGAT TGTTACTCTT ATAATAACTT TTATTTATAA AGTTAATAAA CAGAAACAGA 538 AACAAGATGA AGCAGAAAA- AATTTAAAAT AGAAGAATTA ATCCGAGTCC ACTGAAACTA 103735 || ||||||| ||||||||| ||| || ||| | |||||||| |||||||||| || ||||||| AATAAGATGA AGCAGAAAAT AATATAGAAT ACAAGAATTA ATCCGAGTCC ACAGAAACTA 598 TTGTGTGTCC TTAAGAAATT TAA-TCCCTC ACTGTACCCA AGGTTATGGA TTAATTTCTC 103794 | ||||||| |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| CTATGTGTCC TTAAGAAATT TAATTCCCTC ACTGTACCCA AGGTTATGGA TTAATTTCTC 658 CCAAGATAAA ACAGATTAAA CCTGTTAAAT AAATAGTGGT ACCTCAAA 103842 ||||||||| || ||||||| ||||||||| |||||| ||| |||||||| TCAAGATAAA ACGGATTAAA CCTGTTAAAG AAATAGCGGT ACCTCAAA 706 hqPGS_C10HBa0111D09.1+_SGN-E261066- (103138 103842) ******************************************************************************** EST sequence 106 -strand 443 n (File: SGN-E258047-) 1 CAAGAATCGT TCATCAGCCG AAGTTTCATC TGACATAACA GGAACATTCT CATTGATGAA 61 CTTCTGCAGA CTCAACGTAG TGAGATAGAA GAACATCTTT TGCTGCCATC TCTTAAAGTC 121 GACTCCAGAA AACTTTGCAG GTTTCTCAGC CGGTGCTAAG GCAGCATGTG AACGATTATG 181 TGCAACCATT GTTGTTGCAG CACTTACTGT TCCAGCATTT GTTTGACTTG AATTAGTCTT 241 TTTTTTCTGT CACAATTGGC AGATAAATTA AGTATTTAAA ATACTAACAG TAAAGAGCAA 301 ATCTTTACAC AACCTGTTTC TGATTTAACG ATAAAGTTTT TATGTTTTTT TAATCGTTAA 361 TCGAATGATT TTAAAAATTC AAGTAGAGTA GAAAACCATA AAGGTTTTAA TCTCCAGAAA 421 CCTCAAACAC AGAAACTGTA TAA Predicted gene structure (within gDNA segment 102560 to 104358): Exon 1 103170 103614 ( 445 n); cDNA 1 443 ( 443 n); score: 0.966 MATCH C10HBa0111D09.1+ SGN-E258047- 0.966 445 1.005 C PGS_C10HBa0111D09.1+_SGN-E258047- (103170 103614) Alignment (genomic DNA sequence = upper lines): CAAGAATCGT TCATCAGCCG GAGTTTCATC TGACATAACA GGAACATTCT CATTGATGAA 103229 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| CAAGAATCGT TCATCAGCCG AAGTTTCATC TGACATAACA GGAACATTCT CATTGATGAA 60 CTTCTGCAGA CTCAACGTAG TGAGATAGAA GAACATCTTT TGCTGCCATC TCTTAAAGTC 103289 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCTGCAGA CTCAACGTAG TGAGATAGAA GAACATCTTT TGCTGCCATC TCTTAAAGTC 120 GACTCCAAAA AACTTTGCAG GTTTCTCAGC CGGTGCTAAG GCAGCATTTG AATGATTATG 103349 ||||||| || |||||||||| |||||||||| |||||||||| ||||||| || || ||||||| GACTCCAGAA AACTTTGCAG GTTTCTCAGC CGGTGCTAAG GCAGCATGTG AACGATTATG 180 TGCAACCGTT GTTGTTGCAG CACTTACTGT TCCAGCATTT GTTTGACTTG AATTAGTCAT 103409 ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | TGCAACCATT GTTGTTGCAG CACTTACTGT TCCAGCATTT GTTTGACTTG AATTAGTC-T 239 TTTTTTTCTG TCACAAATGG CAGATAAATT AAGTATTTAA AATACTAACA GTAAAGAACA 103469 |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| ||||||| || TTTTTTTCTG TCACAATTGG CAGATAAATT AAGTATTTAA AATACTAACA GTAAAGAGCA 299 AATCTTTACA CAAACTGTTT TTGATTTAAC GATAAAGTTT TTATGTTCTT TTAATCGTTA 103529 |||||||||| ||| |||||| ||||||||| |||||||||| ||||||| || |||||||||| AATCTTTACA CAACCTGTTT CTGATTTAAC GATAAAGTTT TTATGTTTTT TTAATCGTTA 359 ATCGAATGAA TTTTAAAAAT TCAAGCAGAG TAGAAAACCA TAAAGGTTTT AATCTCCAGA 103589 |||||||| | |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| ATCGAATG-A TTTTAAAAAT TCAAGTAGAG TAGAAAACCA TAAAGGTTTT AATCTCCAGA 418 AACCTCAAAT ACAGAAACTG TTTAA 103614 ||||||||| |||||||||| | ||| AACCTCAAAC ACAGAAACTG TATAA 443 hqPGS_C10HBa0111D09.1+_SGN-E258047- (103170 103614) ******************************************************************************** EST sequence 47 -strand 707 n (File: SGN-E263584-) 1 CGTTCATCAG CCGAAGTTTC ATCTGACATA ACAGGAACAT TCTCATTGAT GAACTTCTGC 61 AGACTCAACG TAGTGAGATA GAAGAACATC TTTTGCTGCC ATCTCTTAAA GTCGACTCCA 121 GAAAACTTTG CAGGTTTCTC AGCCGGTGCT AAGGCAGCAT GTGAACGATT ATGTGCAACC 181 ATTGTTGTTG CAGCACTTAC TGTTCCAGCA TTTGTTTGAC TTGAATTAGT CTTTTTTTTC 241 TGTCACAATT GGCAGATAAA TTAAGTATTT AAAATACTAA CAGTAAAGAG CAAATCTTTA 301 CACAACCTGT TTCTGATTTA ACGATAAAGT TTTTATGTTT TTTTAATCGT TAATCGAATG 361 ATTTTAAAAA TTCAAGTAGA GTAGAAAACC ATAAAGGTTT TAATCTCCAG AAACCTCAAA 421 CACAGAAACT GTATAAATTT TCTTAAGATT GTTACTCTTA TAATAACTTT TATTTATAAA 481 GTTAATAAAC AGAAACAGAA ATAAGATGAA GCAGAAAATA ATATAGAATA CAAGAATTAA 541 TCCGAGTCCA CAGAAACTAC TATGTGTCCT TAAGAAATTT AATTCCCTCA CTGTACCCAA 601 GGTTATGGAT TAATTTCTCT CAAGATAAAA CGGATTAAAC CTGTTAAAGA AATAGCGGTA 661 CCTCAAACTT CTTTAACTTC AACGAACTTA AGAACAACAA CAAGTCA Predicted gene structure (within gDNA segment 102441 to 104653): Exon 1 103177 103881 ( 705 n); cDNA 1 707 ( 707 n); score: 0.936 MATCH C10HBa0111D09.1+ SGN-E263584- 0.936 705 0.997 C PGS_C10HBa0111D09.1+_SGN-E263584- (103177 103881) Alignment (genomic DNA sequence = upper lines): CGTTCATCAG CCGGAGTTTC ATCTGACATA ACAGGAACAT TCTCATTGAT GAACTTCTGC 103236 |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTTCATCAG CCGAAGTTTC ATCTGACATA ACAGGAACAT TCTCATTGAT GAACTTCTGC 60 AGACTCAACG TAGTGAGATA GAAGAACATC TTTTGCTGCC ATCTCTTAAA GTCGACTCCA 103296 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGACTCAACG TAGTGAGATA GAAGAACATC TTTTGCTGCC ATCTCTTAAA GTCGACTCCA 120 AAAAACTTTG CAGGTTTCTC AGCCGGTGCT AAGGCAGCAT TTGAATGATT ATGTGCAACC 103356 ||||||||| |||||||||| |||||||||| |||||||||| |||| |||| |||||||||| GAAAACTTTG CAGGTTTCTC AGCCGGTGCT AAGGCAGCAT GTGAACGATT ATGTGCAACC 180 GTTGTTGTTG CAGCACTTAC TGTTCCAGCA TTTGTTTGAC TTGAATTAGT CATTTTTTTT 103416 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| ATTGTTGTTG CAGCACTTAC TGTTCCAGCA TTTGTTTGAC TTGAATTAGT C-TTTTTTTT 239 CTGTCACAAA TGGCAGATAA ATTAAGTATT TAAAATACTA ACAGTAAAGA ACAAATCTTT 103476 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CTGTCACAAT TGGCAGATAA ATTAAGTATT TAAAATACTA ACAGTAAAGA GCAAATCTTT 299 ACACAAACTG TTTTTGATTT AACGATAAAG TTTTTATGTT CTTTTAATCG TTAATCGAAT 103536 |||||| ||| ||| |||||| |||||||||| |||||||||| ||||||||| |||||||||| ACACAACCTG TTTCTGATTT AACGATAAAG TTTTTATGTT TTTTTAATCG TTAATCGAAT 359 GAATTTTAAA AATTCAAGCA GAGTAGAAAA CCATAAAGGT TTTAATCTCC AGAAACCTCA 103596 | |||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| G-ATTTTAAA AATTCAAGTA GAGTAGAAAA CCATAAAGGT TTTAATCTCC AGAAACCTCA 418 AATACAGAAA CTGTTTAAA- TTTCTTAAGA TTGTTCTTCT TACAATAACT TGTATTTATG 103655 || ||||||| |||| |||| |||||||||| ||||| ||| || ||||||| | ||||||| AACACAGAAA CTGTATAAAT TTTCTTAAGA TTGTTACTCT TATAATAACT TTTATTTATA 478 AAGTTAATGA ACAGAAACAG AAACAAGATG AAGCAGAAAA -AATTTAAAA TAGAAGAATT 103714 |||||||| | |||||||||| ||| |||||| |||||||||| ||| || || || ||||||| AAGTTAATAA ACAGAAACAG AAATAAGATG AAGCAGAAAA TAATATAGAA TACAAGAATT 538 AATCCGAGTC CACTGAAACT ATTGTGTGTC CTTAAGAAAT TTAA-TCCCT CACTGTACCC 103773 |||||||||| ||| |||||| | | |||||| |||||||||| |||| ||||| |||||||||| AATCCGAGTC CACAGAAACT ACTATGTGTC CTTAAGAAAT TTAATTCCCT CACTGTACCC 598 AAGGTTATGG ATTAATTTCT CCCAAGATAA AACAGATTAA ACCTGTTAAA TAAATAGTGG 103833 |||||||||| |||||||||| | |||||||| ||| |||||| |||||||||| |||||| || AAGGTTATGG ATTAATTTCT CTCAAGATAA AACGGATTAA ACCTGTTAAA GAAATAGCGG 658 TACCTCAAAC TTCTTTAACT TCAACGAACT GTA-AACAGC AACAAGTCA 103881 |||||||||| |||||||||| |||||||||| | |||| | ||||||||| TACCTCAAAC TTCTTTAACT TCAACGAACT TAAGAACAAC AACAAGTCA 707 hqPGS_C10HBa0111D09.1+_SGN-E263584- (103177 103881) ******************************************************************************** EST sequence 92 -strand 635 n (File: SGN-E276669-) 1 CAGGAACATT CTCATTGATG AACTTCTGCA GACTCAACGT AGTGAGATAG AAGAACATCT 61 TTTGCTGCCA TCTCTTAAAG TCGACTCCAG AAAACTTTGC AGGTTTCTCA GCCGGTGCTA 121 AGGCAGCATG TGAACGATTA TGTGCAACCA TTGTTGTTGC AGCACTTACT GTTCCAGCAT 181 TTGTTTGACT TGAATTAGTC TTTTTTTTCT GTCACAATTG GCAGATAAAT TAAGTATTTA 241 AAATACTAAC AGTAAAGAGC AAATCTTTAC ACAACCTGTT TCTGATTTAA CGATAAAGTT 301 TTTATGTTTT TTTAATCGTT AATCGAATGA TTTTAAAAAT TCAAGTAGAG TAGAAAACCA 361 TAAAGGTTTT AATCTCCAGA AACCTCAAAC ACAGAAACTG TATAAATTTT CTTAAGATTG 421 TTACTCTTAT AATAACTTTT ATTTATAAAG TTAATAAACA GAAACAGAAA TAAGATGAAG 481 CAGAAAATAA TATAGAATAC AAGAATTAAT CCGAGTCCAC AGAAACTACT ATGTGTCCTT 541 AAGAAATTTA ATTCCCTCAC TGTACCCAAG GTTATGGATT AATTTCTCTC AAGATAAAAC 601 GGATTAAACC TGTTAAAGAA ATAGCGGTAC CTCAA Predicted gene structure (within gDNA segment 102598 to 104603): Exon 1 103208 103841 ( 634 n); cDNA 1 635 ( 635 n); score: 0.939 MATCH C10HBa0111D09.1+ SGN-E276669- 0.939 634 0.998 C PGS_C10HBa0111D09.1+_SGN-E276669- (103208 103841) Alignment (genomic DNA sequence = upper lines): CAGGAACATT CTCATTGATG AACTTCTGCA GACTCAACGT AGTGAGATAG AAGAACATCT 103267 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGGAACATT CTCATTGATG AACTTCTGCA GACTCAACGT AGTGAGATAG AAGAACATCT 60 TTTGCTGCCA TCTCTTAAAG TCGACTCCAA AAAACTTTGC AGGTTTCTCA GCCGGTGCTA 103327 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| TTTGCTGCCA TCTCTTAAAG TCGACTCCAG AAAACTTTGC AGGTTTCTCA GCCGGTGCTA 120 AGGCAGCATT TGAATGATTA TGTGCAACCG TTGTTGTTGC AGCACTTACT GTTCCAGCAT 103387 ||||||||| |||| ||||| ||||||||| |||||||||| |||||||||| |||||||||| AGGCAGCATG TGAACGATTA TGTGCAACCA TTGTTGTTGC AGCACTTACT GTTCCAGCAT 180 TTGTTTGACT TGAATTAGTC ATTTTTTTTC TGTCACAAAT GGCAGATAAA TTAAGTATTT 103447 |||||||||| |||||||||| ||||||||| |||||||| | |||||||||| |||||||||| TTGTTTGACT TGAATTAGTC -TTTTTTTTC TGTCACAATT GGCAGATAAA TTAAGTATTT 239 AAAATACTAA CAGTAAAGAA CAAATCTTTA CACAAACTGT TTTTGATTTA ACGATAAAGT 103507 |||||||||| ||||||||| |||||||||| ||||| |||| || ||||||| |||||||||| AAAATACTAA CAGTAAAGAG CAAATCTTTA CACAACCTGT TTCTGATTTA ACGATAAAGT 299 TTTTATGTTC TTTTAATCGT TAATCGAATG AATTTTAAAA ATTCAAGCAG AGTAGAAAAC 103567 ||||||||| |||||||||| |||||||||| ||||||||| ||||||| || |||||||||| TTTTATGTTT TTTTAATCGT TAATCGAATG -ATTTTAAAA ATTCAAGTAG AGTAGAAAAC 358 CATAAAGGTT TTAATCTCCA GAAACCTCAA ATACAGAAAC TGTTTAAA-T TTCTTAAGAT 103626 |||||||||| |||||||||| |||||||||| | |||||||| ||| |||| | |||||||||| CATAAAGGTT TTAATCTCCA GAAACCTCAA ACACAGAAAC TGTATAAATT TTCTTAAGAT 418 TGTTCTTCTT ACAATAACTT GTATTTATGA AGTTAATGAA CAGAAACAGA AACAAGATGA 103686 |||| |||| | |||||||| ||||||| | ||||||| || |||||||||| || ||||||| TGTTACTCTT ATAATAACTT TTATTTATAA AGTTAATAAA CAGAAACAGA AATAAGATGA 478 AGCAGAAAA- AATTTAAAAT AGAAGAATTA ATCCGAGTCC ACTGAAACTA TTGTGTGTCC 103745 ||||||||| ||| || ||| | |||||||| |||||||||| || ||||||| | ||||||| AGCAGAAAAT AATATAGAAT ACAAGAATTA ATCCGAGTCC ACAGAAACTA CTATGTGTCC 538 TTAAGAAATT TAA-TCCCTC ACTGTACCCA AGGTTATGGA TTAATTTCTC CCAAGATAAA 103804 |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| ||||||||| TTAAGAAATT TAATTCCCTC ACTGTACCCA AGGTTATGGA TTAATTTCTC TCAAGATAAA 598 ACAGATTAAA CCTGTTAAAT AAATAGTGGT ACCTCAA 103841 || ||||||| ||||||||| |||||| ||| ||||||| ACGGATTAAA CCTGTTAAAG AAATAGCGGT ACCTCAA 635 hqPGS_C10HBa0111D09.1+_SGN-E276669- (103208 103841) ******************************************************************************** EST sequence 104 +strand 653 n (File: SGN-E273518+) 1 GGAAGTCAAA TTTTGATTTT TTAAACACTG AAAATTTTTC TTTCTCTGCA TTTATTTTTC 61 TCTCAAATAA AATCAAAGTG TCGATCGACT GAGTCTGTGT GACTTGTTGT TGTTCTTAAG 121 TTCGTTGAAG TTAAAGAAGT TTGAGGTACC GCTATTTCTT TAACAGGTTT AATCCGTTTT 181 ATCTTGAGAG AAATTAATCC ATAACCTTGG GTACAGTGAG GGAATTAAAT TTCTTAAGGA 241 CACATAGTAG TTTCTGTGGA CTCGGATTAA TTCTTGTATT CTATATTATT TTCTGCTTCA 301 TCTTATTTCT GTTTCTGTTT ATTAACTTTA TAAATAAAAG TTATTATAAG AGTAACAATC 361 TTAAGAAAAT TTATACAGTT TCTGTGTTTG AGGTTTCTGG AGATTAAAAC CTTTATGGTT 421 TTCTACTCTA CTTGAATTTT TAAAATCATT CGATTAACGA TTAAAAAAAC ATAAAAACTT 481 TATCGTTAAA TCAGAAACAG GTTGTGTAAA GATTTGCTCT TTACTGTTAG TATTTTAAAT 541 ACTTAATTTA TCTGCCAATT GTGACAGAAA AAAAAGACTA ATTCAAGTCA AACAAATGCT 601 GGAACAGTAA GTGCTGCAAC AACAATGGTT GCACATAATC GTTCACATGC TGC Predicted gene structure (within gDNA segment 104886 to 102468): Exon 1 103981 103330 ( 652 n); cDNA 1 653 ( 653 n); score: 0.926 MATCH C10HBa0111D09.1- SGN-E273518+ 0.926 652 0.998 C PGS_C10HBa0111D09.1-_SGN-E273518+ (103981 103330) Alignment (genomic DNA sequence = upper lines): GGAAGTCAAT TTTTGATTTT TTAATCACTG AAGATTTTTT CTTTCTCTGC ATTTATTTTT 103922 ||||||||| |||||||||| |||| ||||| || | ||||| |||||||||| |||||||||| GGAAGTCAAA TTTTGATTTT TTAAACACTG AA-AATTTTT CTTTCTCTGC ATTTATTTTT 59 CTCTCAAATA AAATCAAAGT GTCGATCGAC TGAGTCAGTG TGACTTGTTG CTGTT-TACA 103863 |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| |||| | | CTCTCAAATA AAATCAAAGT GTCGATCGAC TGAGTCTGTG TGACTTGTTG TTGTTCTTAA 119 GTTCGTTGAA GTTAAAGAAG TTTGAGGTAC CACTATTTAT TTAACAGGTT TAATCTGTTT 103803 |||||||||| |||||||||| |||||||||| | |||||| | |||||||||| ||||| |||| GTTCGTTGAA GTTAAAGAAG TTTGAGGTAC CGCTATTTCT TTAACAGGTT TAATCCGTTT 179 TATCTTGGGA GAAATTAATC CATAACCTTG GGTACAGTGA GGG-ATTAAA TTTCTTAAGG 103744 ||||||| || |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| TATCTTGAGA GAAATTAATC CATAACCTTG GGTACAGTGA GGGAATTAAA TTTCTTAAGG 239 ACACACAATA GTTTCAGTGG ACTCGGATTA ATTCTTCTAT TTTAAATT-T TTTCTGCTTC 103685 ||||| | || ||||| |||| |||||||||| |||||| ||| | || ||| | |||||||||| ACACATAGTA GTTTCTGTGG ACTCGGATTA ATTCTTGTAT TCTATATTAT TTTCTGCTTC 299 ATCTTGTTTC TGTTTCTGTT CATTAACTTC ATAAATACAA GTTATTGTAA GAAGAACAAT 103625 ||||| |||| |||||||||| |||||||| ||||||| || |||||| ||| || |||||| ATCTTATTTC TGTTTCTGTT TATTAACTTT ATAAATAAAA GTTATTATAA GAGTAACAAT 359 CTTAAG-AAA TTTAAACAGT TTCTGTATTT GAGGTTTCTG GAGATTAAAA CCTTTATGGT 103566 |||||| ||| |||| ||||| |||||| ||| |||||||||| |||||||||| |||||||||| CTTAAGAAAA TTTATACAGT TTCTGTGTTT GAGGTTTCTG GAGATTAAAA CCTTTATGGT 419 TTTCTACTCT GCTTGAATTT TTAAAATTCA TTCGATTAAC GATTAAAAGA ACATAAAAAC 103506 |||||||||| ||||||||| |||||| ||| |||||||||| |||||||| | |||||||||| TTTCTACTCT ACTTGAATTT TTAAAA-TCA TTCGATTAAC GATTAAAAAA ACATAAAAAC 478 TTTATCGTTA AATCAAAAAC AGTTTGTGTA AAGATTTGTT CTTTACTGTT AGTATTTTAA 103446 |||||||||| ||||| |||| || ||||||| |||||||| | |||||||||| |||||||||| TTTATCGTTA AATCAGAAAC AGGTTGTGTA AAGATTTGCT CTTTACTGTT AGTATTTTAA 538 ATACTTAATT TATCTGCCAT TTGTGACAGA AAAAAAATGA CTAATTCAAG TCAAACAAAT 103386 |||||||||| ||||||||| |||||||||| ||||||| || |||||||||| |||||||||| ATACTTAATT TATCTGCCAA TTGTGACAGA AAAAAAA-GA CTAATTCAAG TCAAACAAAT 597 GCTGGAACAG TAAGTGCTGC AACAACAACG GTTGCACATA ATCATTCAAA TGCTGC 103330 |||||||||| |||||||||| |||||||| | |||||||||| ||| |||| | |||||| GCTGGAACAG TAAGTGCTGC AACAACAATG GTTGCACATA ATCGTTCACA TGCTGC 653 hqPGS_C10HBa0111D09.1-_SGN-E273518+ (103981 103330) ******************************************************************************** EST sequence 36 +strand 387 n (File: SGN-E241550+) 1 AATTTCTTAA GGACACACAG TAGTTTCTGT GGACTCGGAT TAATTCTTCT GTTTTAAATT 61 TTTTCTGCTT CATCTTGTTT CTATTTCTAT TCATTAACTT CATAAATACA AGTTATTGTA 121 AGAATAACAA TTTTATAACA ATCTTAAGAA ATTTAACAGT TTTTGTATTT GAGGTTTCTG 181 GAGATTAAAA CCTTTATGGT TGGGTTTCTA TTCTGCTTGA ATTTTTAAAA TTTATTCGAT 241 TAACGATTAA AAGAACATAA AAACTTTATC GTTTAATCAG AAACAGTTTG TGTAAAGAAT 301 TGTTTTTTAT TGTTAATATT TTAAATACTT AATTTATCTG CCATTTGTGA CAGAAAAAAA 361 TGACTAATTC AAGTCAAACA AATGCTG Predicted gene structure (within gDNA segment 104355 to 102772): Exon 1 103755 103382 ( 374 n); cDNA 1 387 ( 387 n); score: 0.856 MATCH C10HBa0111D09.1- SGN-E241550+ 0.856 374 0.966 C PGS_C10HBa0111D09.1-_SGN-E241550+ (103755 103382) Alignment (genomic DNA sequence = upper lines): AATTTCTTAA GGACACACAA TAGTTTCAGT GGACTCGGAT TAATTCTTCT ATTTTAAATT 103696 |||||||||| ||||||||| ||||||| || |||||||||| |||||||||| ||||||||| AATTTCTTAA GGACACACAG TAGTTTCTGT GGACTCGGAT TAATTCTTCT GTTTTAAATT 60 TTTTCTGCTT CATCTTGTTT CTGTTTCTGT TCATTAACTT CATAAATACA AGTTATTGTA 103636 |||||||||| |||||||||| || ||||| | |||||||||| |||||||||| |||||||||| TTTTCTGCTT CATCTTGTTT CTATTTCTAT TCATTAACTT CATAAATACA AGTTATTGTA 120 AGAAGAACAA TCTTA-AGAA AT-TT----- A---AACAGT TTCTGTATTT GAGGTTTCTG 103586 |||| ||||| | ||| | | || || | |||||| || ||||||| |||||||||| AGAATAACAA TTTTATAACA ATCTTAAGAA ATTTAACAGT TTTTGTATTT GAGGTTTCTG 180 GAGATTAAAA CCTTTATGG- T---TTTCTA CTCTGCTTGA ATTTTTAAAA TTCATTCGAT 103530 |||||||||| ||||||||| | |||||| ||||||||| |||||||||| || ||||||| GAGATTAAAA CCTTTATGGT TGGGTTTCTA TTCTGCTTGA ATTTTTAAAA TTTATTCGAT 240 TAACGATTAA AAGAACATAA AAACTTTATC GTTAAATCAA AAACAGTTTG TGTAAAGATT 103470 |||||||||| |||||||||| |||||||||| ||| ||||| |||||||||| |||||||| | TAACGATTAA AAGAACATAA AAACTTTATC GTTTAATCAG AAACAGTTTG TGTAAAGAAT 300 TGTTCTTTAC TGTTAGTATT TTAAATACTT AATTTATCTG CCATTTGTGA CAGAAAAAAA 103410 |||| |||| ||||| |||| |||||||||| |||||||||| |||||||||| ||| |||||| TGTTTTTTAT TGTTAATATT TTAAATACTT AATTTATCTG CCATTTGTGA CAG-AAAAAA 359 ATGACTAATT CAAGTCAAAC AAATGCTG 103382 |||||||||| |||||||||| |||||||| ATGACTAATT CAAGTCAAAC AAATGCTG 387 hqPGS_C10HBa0111D09.1-_SGN-E241550+ (103755 103382) ******************************************************************************** EST sequence 76 -strand 191 n (File: SGN-E375521-) 1 GATTTTAAAA ATTCAAGTAG AGTAGAAAAC CATAAAGGTT TTAATCTCCA GAAACCTCAA 61 ACACAGAAAC TGTATAAATT TTCTTAAGAT TGTTACTCTT ATAATAACTT TTATTTATAA 121 AGTTAATAAA CAGAAACAGA AATAAGATGA AGCAGAAAAT AATATAGAAT ACAAGAATTA 181 ATCCGAGTCC A Predicted gene structure (within gDNA segment 102919 to 104326): Exon 1 103539 103726 ( 188 n); cDNA 2 191 ( 190 n); score: 0.904 MATCH C10HBa0111D09.1+ SGN-E375521- 0.904 188 0.984 C PGS_C10HBa0111D09.1+_SGN-E375521- (103539 103726) Alignment (genomic DNA sequence = upper lines): ATTTTAAAAA TTCAAGCAGA GTAGAAAACC ATAAAGGTTT TAATCTCCAG AAACCTCAAA 103598 |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTTAAAAA TTCAAGTAGA GTAGAAAACC ATAAAGGTTT TAATCTCCAG AAACCTCAAA 61 TACAGAAACT GTTTAAA-TT TCTTAAGATT GTTCTTCTTA CAATAACTTG TATTTATGAA 103657 ||||||||| || |||| || |||||||||| ||| ||||| |||||||| ||||||| || CACAGAAACT GTATAAATTT TCTTAAGATT GTTACTCTTA TAATAACTTT TATTTATAAA 121 GTTAATGAAC AGAAACAGAA ACAAGATGAA GCAGAAAA-A ATTTAAAATA GAAGAATTAA 103716 |||||| ||| |||||||||| | |||||||| |||||||| | || || |||| ||||||||| GTTAATAAAC AGAAACAGAA ATAAGATGAA GCAGAAAATA ATATAGAATA CAAGAATTAA 181 TCCGAGTCCA 103726 |||||||||| TCCGAGTCCA 191 hqPGS_C10HBa0111D09.1+_SGN-E375521- (103539 103726) ******************************************************************************** EST sequence 40 -strand 231 n (File: SGN-E228046-) 1 TTTTAAAAAT TCAAGCAGAA TAAAAAACCA ACCATAAAGG TTTTAATCTC CAAAAACCTC 61 AAATACAAAA ACTGTTAAAT TTCTTAAGAT TGTTATAAAA TTGTTATTCT TACAATAACT 121 TGTATTTATG AAGTTAATGA ATAGAAATAG AAACAAGATG AAGCAGAAAA AATTTAAAAC 181 AGAAGAATTA ATCCGAGTCC ACAGAAACTA CTGTGTGTCC TTAAGAAATT T Predicted gene structure (within gDNA segment 102930 to 104356): Exon 1 103625 103756 ( 132 n); cDNA 100 231 ( 132 n); score: 0.955 MATCH C10HBa0111D09.1+ SGN-E228046- 0.955 132 0.571 C PGS_C10HBa0111D09.1+_SGN-E228046- (103625 103756) Alignment (genomic DNA sequence = upper lines): ATTGTTCTTC TTACAATAAC TTGTATTTAT GAAGTTAATG AACAGAAACA GAAACAAGAT 103684 |||||| ||| |||||||||| |||||||||| |||||||||| || ||||| | |||||||||| ATTGTTATTC TTACAATAAC TTGTATTTAT GAAGTTAATG AATAGAAATA GAAACAAGAT 159 GAAGCAGAAA AAATTTAAAA TAGAAGAATT AATCCGAGTC CACTGAAACT ATTGTGTGTC 103744 |||||||||| |||||||||| ||||||||| |||||||||| ||| |||||| | |||||||| GAAGCAGAAA AAATTTAAAA CAGAAGAATT AATCCGAGTC CACAGAAACT ACTGTGTGTC 219 CTTAAGAAAT TT 103756 |||||||||| || CTTAAGAAAT TT 231 hqPGS_C10HBa0111D09.1+_SGN-E228046- (103625 103756) ******************************************************************************** EST sequence 82 +strand 688 n (File: SGN-E395007+) 1 TGCCTGCACA AAAAGTAGTA CACACATATG CTGGTATCAA TTTTCACGAA TTGCATATAT 61 TCTCTACAAC CCACTAATTT TTCCTAAATT ATACGTCCCC ATTATTTCTA TCTATATTGT 121 TTCAAATTTC TTAGGAGTAG TTGTATCGTG AATATACCAA CTAAACTTGC TACTAAAATC 181 AGCATACTAA TGATAAACAT GACCTAAATA TTCTGGAATC TTCTTTGTTA TGTGTCACAT 241 ACAAAAATGA TGTTTATGTT GGGTTTTAAC AAGTGTGAAT GGAAAAATAA AAAAGAGAAT 301 ATCAAAAGTG AGGGAACTAC TTTGGAGGGA AAATGAAAAG TCATTTGCAA AGTGCAAATG 361 AAAAGTCATT TCTTTGGATT TGGATTTGGA TTTGGCAAAT GATGTGATTG ATTGATATAT 421 TTTTTGGACA AAATTTATTC AATCAATTTT TGTTAAATCA AATAAATCCT GTTAATATTA 481 TTTCTTATAA ATTTGCGGGT AACAGTAACA TTCCGAAAAG TCGTTACTTT TCCGAAAAGT 541 CGTTACTTTC CAAAAAGTAG TTATTTTCCT AACAGACACA ATTTTTCAAA AAAGTTGTTA 601 TTTTTTCCAA AAGACACAAC TTTCTGGATA AAATGGGTCT GAACAAATTT CACTGAACGG 661 ACATGTTCCT TGCTGAAAAT GCTATAAA Predicted gene structure (within gDNA segment 107922 to 102969): Exon 1 104931 104905 ( 27 n); cDNA 225 250 ( 26 n); score: 0.704 Intron 1 104904 104328 ( 577 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.86) Exon 2 104327 104195 ( 133 n); cDNA 251 382 ( 132 n); score: 0.910 MATCH C10HBa0111D09.1- SGN-E395007+ 0.910 160 0.233 C PGS_C10HBa0111D09.1-_SGN-E395007+ (104931 104905,104327 104195) Alignment (genomic DNA sequence = upper lines): TTGTTAATGG ATCAAATCCA TAAGTTAATA TCCTATACCA CTTGACCAAT TTACTGAAAT 104872 ||||| ||| ||| || || || | | TTGTT-ATGT GTCACATACA AAAATGA... .......... .......... .......... 250 AAGTTAAAGA AGATTTTTAT TTTTAATGGT ACCACAAACC ATTTTCCTAA ATTCACCGCC 104812 .......... .......... .......... .......... .......... .......... 250 GAAAGAGAAC ACGAACGACT CAGGTAAAAA CCTATCCTTT CTATGCAATC TTATATTATG 104752 .......... .......... .......... .......... .......... .......... 250 TATATGGATT GTTTATTGTA TTATTATTGT TATTACCGGA TGATTGGAGA AAGCTAACAC 104692 .......... .......... .......... .......... .......... .......... 250 CAATAAATTT AATTATCATA TAGAGATTTG AAAAAAAAAA AAACTATGTG ACATTGAAGT 104632 .......... .......... .......... .......... .......... .......... 250 TTTGGTTGAA TAAAATAAGA CTGATGGAGG ATTAAATTGT GGAGAAATTA TAATTGGTGG 104572 .......... .......... .......... .......... .......... .......... 250 GTTGATAGAG TTATCCCCAC TACAACAACT ATTGAAGTTT GTGTAGGGTT ACTAGAAAAC 104512 .......... .......... .......... .......... .......... .......... 250 AAAAGAAAAA CAATTGAGGT AGTCATCATT GCATAATCGT GAGACTTTGA ATTAGGAGAT 104452 .......... .......... .......... .......... .......... .......... 250 ACATTGTAGG CGTGAGTGCA TTAATTAAAA GGGTACCATT TATTCCTCTA AGTTTTATGG 104392 .......... .......... .......... .......... .......... .......... 250 TTGTTGTTAT TCATATATAG GTTAGTTTTA TGTATATTTA TTCATTCGTG ATTGAATGTT 104332 .......... .......... .......... .......... .......... .......... 250 ATGTTGGGTG TGTTGGGTTT TAGCAAGTGT GAATGGGAAA AGAAAAGAGA GAATATGACA 104272 || | |||||||||| || ||||||| |||||| ||| | |||| ||| |||||| | | ....TGTTTA TGTTGGGTTT TAACAAGTGT GAATGGAAAA ATAAAAAAGA GAATATCAAA 306 AGTGAGGGAA CTACTTTGGA GGGAAAATGA AAAGTCATTT GCAAAGTGCA AATGAAAAGT 104212 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTGAGGGAA CTACTTTGGA GGGAAAATGA AAAGTCATTT GCAAAGTGCA AATGAAAAGT 366 CATTTCTTAT AAATTTG 104195 |||||||| | ||||| CATTTCTT-T GGATTTG 382 hqPGS_C10HBa0111D09.1-_SGN-E395007+ (104931 104905,104327 104195) ******************************************************************************** EST sequence 67 +strand 586 n (File: SGN-E250408+) 1 GTGCCTGCAC AAAAAGTAGT ACACACATAT GCTGGTATCA ATTTTCACGA ATTGCATATA 61 TTCTCTACAA CCCACTAATT TTTCCTAAAT TATACGTCCC CATTATTTCT ATCTATATTG 121 TTTCAAATTT CTTAAGAGTA GTTGTATCGT GAATATACCA ACTAAACTTG CTACTAAAAT 181 CAGCATACTA ATGATAAACA TGACCTAAAT ATTCTGGAAT CTTCTTTGTT ATGTGTCACA 241 TACAAAAATG ATGTTTATGT TGGGTTTTAA CAAGTGTGAA TGGAAAAATA AAAAAGAGAA 301 TATCAAAAGT GAGGGAACTA CTTTGGAGGG AAAATGAAAA GTCATTTGCA AAGTGCAAAT 361 GAAAAGTCAT TTCTTTGGAT TTGGATTTGG ATTTGGCAAA TGATGTGATT GATTGATATA 421 TTTTTTGGAC AAAATTTATT CAATCAATTT TTGTTAAATC AAATAAATCC TGTTAATATT 481 ATTTCTTATA AATTTGCGGG TAACAGTAAC ATTCCGAAAA GTCGTTACTT TTCCGAAAAG 541 TCGTTACTTT CCAAAAAGTA GTTATTTTCC TAACAGACAC AATTTT Predicted gene structure (within gDNA segment 107932 to 103467): Exon 1 104931 104905 ( 27 n); cDNA 226 251 ( 26 n); score: 0.704 Intron 1 104904 104328 ( 577 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.86) Exon 2 104327 104195 ( 133 n); cDNA 252 383 ( 132 n); score: 0.910 MATCH C10HBa0111D09.1- SGN-E250408+ 0.910 160 0.273 C PGS_C10HBa0111D09.1-_SGN-E250408+ (104931 104905,104327 104195) Alignment (genomic DNA sequence = upper lines): TTGTTAATGG ATCAAATCCA TAAGTTAATA TCCTATACCA CTTGACCAAT TTACTGAAAT 104872 ||||| ||| ||| || || || | | TTGTT-ATGT GTCACATACA AAAATGA... .......... .......... .......... 251 AAGTTAAAGA AGATTTTTAT TTTTAATGGT ACCACAAACC ATTTTCCTAA ATTCACCGCC 104812 .......... .......... .......... .......... .......... .......... 251 GAAAGAGAAC ACGAACGACT CAGGTAAAAA CCTATCCTTT CTATGCAATC TTATATTATG 104752 .......... .......... .......... .......... .......... .......... 251 TATATGGATT GTTTATTGTA TTATTATTGT TATTACCGGA TGATTGGAGA AAGCTAACAC 104692 .......... .......... .......... .......... .......... .......... 251 CAATAAATTT AATTATCATA TAGAGATTTG AAAAAAAAAA AAACTATGTG ACATTGAAGT 104632 .......... .......... .......... .......... .......... .......... 251 TTTGGTTGAA TAAAATAAGA CTGATGGAGG ATTAAATTGT GGAGAAATTA TAATTGGTGG 104572 .......... .......... .......... .......... .......... .......... 251 GTTGATAGAG TTATCCCCAC TACAACAACT ATTGAAGTTT GTGTAGGGTT ACTAGAAAAC 104512 .......... .......... .......... .......... .......... .......... 251 AAAAGAAAAA CAATTGAGGT AGTCATCATT GCATAATCGT GAGACTTTGA ATTAGGAGAT 104452 .......... .......... .......... .......... .......... .......... 251 ACATTGTAGG CGTGAGTGCA TTAATTAAAA GGGTACCATT TATTCCTCTA AGTTTTATGG 104392 .......... .......... .......... .......... .......... .......... 251 TTGTTGTTAT TCATATATAG GTTAGTTTTA TGTATATTTA TTCATTCGTG ATTGAATGTT 104332 .......... .......... .......... .......... .......... .......... 251 ATGTTGGGTG TGTTGGGTTT TAGCAAGTGT GAATGGGAAA AGAAAAGAGA GAATATGACA 104272 || | |||||||||| || ||||||| |||||| ||| | |||| ||| |||||| | | ....TGTTTA TGTTGGGTTT TAACAAGTGT GAATGGAAAA ATAAAAAAGA GAATATCAAA 307 AGTGAGGGAA CTACTTTGGA GGGAAAATGA AAAGTCATTT GCAAAGTGCA AATGAAAAGT 104212 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTGAGGGAA CTACTTTGGA GGGAAAATGA AAAGTCATTT GCAAAGTGCA AATGAAAAGT 367 CATTTCTTAT AAATTTG 104195 |||||||| | ||||| CATTTCTT-T GGATTTG 383 hqPGS_C10HBa0111D09.1-_SGN-E250408+ (104931 104905,104327 104195) ******************************************************************************** EST sequence 69 +strand 417 n (File: SGN-E250410+) 1 CACACATATG CTGGAATCAA TTTTCACGAA TAGCATATAT TCTCTACAAC CCGCTAATTT 61 TTCCTAAATT ATACGTCCCC ATTATTACTA TCTATATTGT TTCAAATTTC TTAAGAGTAG 121 TTGTATCGTG AATATACCAA CTAAACTTGC TACTAAAATC AGCATACTAA TGATAAACAT 181 GACCTAAATA TTCTGGAATC TTCTTTGTTA TGTGTCACAT ACAAAAATGA TGTTTATATT 241 GGGTTTTAAC AAGTGTGAAT GGAAAAATAA AAAAGAGAAT ATCAAAAGTG AGGGAACTAC 301 TTTGGAAGGA AAATGAAAAG TCATTTGCAA AGTGCAAATG AAAAGTCATT GCTTTGGATT 361 TGGATTTGGA TTTGGCAAAT GATGTGATTG ATTGATATAT TATGTGGACA AAATTTA Predicted gene structure (within gDNA segment 107722 to 102927): Exon 1 104931 104905 ( 27 n); cDNA 205 230 ( 26 n); score: 0.704 Intron 1 104904 104328 ( 577 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.84) Exon 2 104327 104195 ( 133 n); cDNA 231 362 ( 132 n); score: 0.887 MATCH C10HBa0111D09.1- SGN-E250410+ 0.887 160 0.384 C PGS_C10HBa0111D09.1-_SGN-E250410+ (104931 104905,104327 104195) Alignment (genomic DNA sequence = upper lines): TTGTTAATGG ATCAAATCCA TAAGTTAATA TCCTATACCA CTTGACCAAT TTACTGAAAT 104872 ||||| ||| ||| || || || | | TTGTT-ATGT GTCACATACA AAAATGA... .......... .......... .......... 230 AAGTTAAAGA AGATTTTTAT TTTTAATGGT ACCACAAACC ATTTTCCTAA ATTCACCGCC 104812 .......... .......... .......... .......... .......... .......... 230 GAAAGAGAAC ACGAACGACT CAGGTAAAAA CCTATCCTTT CTATGCAATC TTATATTATG 104752 .......... .......... .......... .......... .......... .......... 230 TATATGGATT GTTTATTGTA TTATTATTGT TATTACCGGA TGATTGGAGA AAGCTAACAC 104692 .......... .......... .......... .......... .......... .......... 230 CAATAAATTT AATTATCATA TAGAGATTTG AAAAAAAAAA AAACTATGTG ACATTGAAGT 104632 .......... .......... .......... .......... .......... .......... 230 TTTGGTTGAA TAAAATAAGA CTGATGGAGG ATTAAATTGT GGAGAAATTA TAATTGGTGG 104572 .......... .......... .......... .......... .......... .......... 230 GTTGATAGAG TTATCCCCAC TACAACAACT ATTGAAGTTT GTGTAGGGTT ACTAGAAAAC 104512 .......... .......... .......... .......... .......... .......... 230 AAAAGAAAAA CAATTGAGGT AGTCATCATT GCATAATCGT GAGACTTTGA ATTAGGAGAT 104452 .......... .......... .......... .......... .......... .......... 230 ACATTGTAGG CGTGAGTGCA TTAATTAAAA GGGTACCATT TATTCCTCTA AGTTTTATGG 104392 .......... .......... .......... .......... .......... .......... 230 TTGTTGTTAT TCATATATAG GTTAGTTTTA TGTATATTTA TTCATTCGTG ATTGAATGTT 104332 .......... .......... .......... .......... .......... .......... 230 ATGTTGGGTG TGTTGGGTTT TAGCAAGTGT GAATGGGAAA AGAAAAGAGA GAATATGACA 104272 || | | |||||||| || ||||||| |||||| ||| | |||| ||| |||||| | | ....TGTTTA TATTGGGTTT TAACAAGTGT GAATGGAAAA ATAAAAAAGA GAATATCAAA 286 AGTGAGGGAA CTACTTTGGA GGGAAAATGA AAAGTCATTT GCAAAGTGCA AATGAAAAGT 104212 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| AGTGAGGGAA CTACTTTGGA AGGAAAATGA AAAGTCATTT GCAAAGTGCA AATGAAAAGT 346 CATTTCTTAT AAATTTG 104195 |||| ||| | ||||| CATTGCTT-T GGATTTG 362 hqPGS_C10HBa0111D09.1-_SGN-E250410+ (104931 104905,104327 104195) ******************************************************************************** EST sequence 79 +strand 591 n (File: SGN-E254845+) 1 AGGAAGTCAA ATTTTGATTT TTTAAACACT GAAAATTTGG CTTTCGGTGC ATTTATTTTT 61 CTCTCAAATA AAATCAAAGT GTCGATCGAC TGAGTCTGTG TGACTTGTTG TTGTTCTTAA 121 GTTCGTTGAA GTTAAAGAAG TTTGAGGTAC CGCTATTTCT TTAACAGGTT TAATCCGTTT 181 TATCTTGAGA GAAATTAATC CATAACCTTG GGTACCAGTG AGGGAATTAA ATTTCTTAAG 241 GACACATAGT AGTTTCTGTG GACTCGGATT AATTCTTGTA TTCTATATTA TTTTCTGCTT 301 CATCTTATTT CTGTTTCTGT TTATTAACTT TATAAATAAA AGTTATTATA AGAGTAACAA 361 TCTTAAGAAA ATTTATACAG TTTCTGTGTT TGAGGTTTCT GGAGAATAAA ACCTTTATGG 421 TTTTCTACTC TACTTGAATT TTTAAAATCA TTCGATTAAC GATTAAAAAA ACATAAAAAC 481 TTTATCGTTA AATCAGAAAC AGGTTGTGTA AAGAATTGCT CTTTACTGTT AGTATTTTAA 541 ATACTTAATT TATCTGCCAA TTGTGACAGA AAAAAAAGAC TAATTCAAGT C Predicted gene structure (within gDNA segment 105004 to 102659): Exon 1 103982 103394 ( 589 n); cDNA 1 591 ( 591 n); score: 0.909 MATCH C10HBa0111D09.1- SGN-E254845+ 0.909 589 0.997 C PGS_C10HBa0111D09.1-_SGN-E254845+ (103982 103394) Alignment (genomic DNA sequence = upper lines): AGGAAGTCAA TTTTTGATTT TTTAATCACT GAAGATTTTT TCTTTCTCTG CATTTATTTT 103923 |||||||||| ||||||||| ||||| |||| ||| | ||| ||||| || |||||||||| AGGAAGTCAA ATTTTGATTT TTTAAACACT GAA-AATTTG GCTTTCGGTG CATTTATTTT 59 TCTCTCAAAT AAAATCAAAG TGTCGATCGA CTGAGTCAGT GTGACTTGTT GCTGTT-TAC 103864 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| | |||| | TCTCTCAAAT AAAATCAAAG TGTCGATCGA CTGAGTCTGT GTGACTTGTT GTTGTTCTTA 119 AGTTCGTTGA AGTTAAAGAA GTTTGAGGTA CCACTATTTA TTTAACAGGT TTAATCTGTT 103804 |||||||||| |||||||||| |||||||||| || |||||| |||||||||| |||||| ||| AGTTCGTTGA AGTTAAAGAA GTTTGAGGTA CCGCTATTTC TTTAACAGGT TTAATCCGTT 179 TTATCTTGGG AGAAATTAAT CCATAACCTT GGGTA-CAGT GAGGG-ATTA AATTTCTTAA 103746 |||||||| | |||||||||| |||||||||| ||||| |||| ||||| |||| |||||||||| TTATCTTGAG AGAAATTAAT CCATAACCTT GGGTACCAGT GAGGGAATTA AATTTCTTAA 239 GGACACACAA TAGTTTCAGT GGACTCGGAT TAATTCTTCT ATTTTAAATT -TTTTCTGCT 103687 ||||||| | ||||||| || |||||||||| |||||||| | ||| || ||| ||||||||| GGACACATAG TAGTTTCTGT GGACTCGGAT TAATTCTTGT ATTCTATATT ATTTTCTGCT 299 TCATCTTGTT TCTGTTTCTG TTCATTAACT TCATAAATAC AAGTTATTGT AAGAAGAACA 103627 ||||||| || |||||||||| || ||||||| | ||||||| |||||||| | |||| |||| TCATCTTATT TCTGTTTCTG TTTATTAACT TTATAAATAA AAGTTATTAT AAGAGTAACA 359 ATCTTAAG-A AATTTAAACA GTTTCTGTAT TTGAGGTTTC TGGAGATTAA AACCTTTATG 103568 |||||||| | |||||| ||| |||||||| | |||||||||| |||||| ||| |||||||||| ATCTTAAGAA AATTTATACA GTTTCTGTGT TTGAGGTTTC TGGAGAATAA AACCTTTATG 419 GTTTTCTACT CTGCTTGAAT TTTTAAAATT CATTCGATTA ACGATTAAAA GAACATAAAA 103508 |||||||||| || ||||||| |||||||| | |||||||||| |||||||||| ||||||||| GTTTTCTACT CTACTTGAAT TTTTAAAA-T CATTCGATTA ACGATTAAAA AAACATAAAA 478 ACTTTATCGT TAAATCAAAA ACAGTTTGTG TAAAGATTTG TTCTTTACTG TTAGTATTTT 103448 |||||||||| ||||||| || |||| ||||| |||||| ||| ||||||||| |||||||||| ACTTTATCGT TAAATCAGAA ACAGGTTGTG TAAAGAATTG CTCTTTACTG TTAGTATTTT 538 AAATACTTAA TTTATCTGCC ATTTGTGACA GAAAAAAAAT GACTAATTCA AGTC 103394 |||||||||| |||||||||| | |||||||| ||||||||| |||||||||| |||| AAATACTTAA TTTATCTGCC AATTGTGACA GAAAAAAAA- GACTAATTCA AGTC 591 hqPGS_C10HBa0111D09.1-_SGN-E254845+ (103982 103394) ******************************************************************************** EST sequence 54 -strand 606 n (File: SGN-E262710-) 1 TTTTTTTCTG TCACAATTGG CAGATAAATT AAGTATTTAA AATACTAACA GTAAAGAGCA 61 AATCTTTACA CAACCTGTTT CTGATTTAAC GATAAAGTTT TTATGTTTTT TTAATCGTTA 121 ATCGAATGAT TTTAAAAATT CAAGTAGAGT AGAAAACCAT AAAGGTTTTA ATCTCCAGAA 181 ACCTCAAACA CAGAAACTGT ATAAATTTTC TTAAGATTGT TACTCTTATA ATAACTTTTA 241 TTTATAAAGT TAATAAACAG AAACAGAAAT AAGATGAAGC AGAAAATAAT ATAGAATACA 301 AGAATTAATC CGAGTCCACA GAAACTACTA TGTGTCCTTA AGAAATTTAA TTCCCTCACT 361 GTACCCAAGG TTATGGATTA ATTTCTCTCA AGATAAAACG GATTAAACCT GTTAAAGAAA 421 TAGCGGTACC TCAAACTTCT TTAACTTCAA CGAACTTAAG AACAACAACA AGTCACACAG 481 ACTCAGTCGA TCGACACTTT GATTTTATTT GAGAGAAAAA TAAATGCAGA GAAAGAAAAA 541 TTTTCAGTGT TTAAAAAATC AAAATTTGAC TTCCTTTTAT AGCCATTTTC AGCAAGGAAC 601 ATGTCC Predicted gene structure (within gDNA segment 102800 to 104703): Exon 1 103410 104011 ( 602 n); cDNA 1 604 ( 604 n); score: 0.925 MATCH C10HBa0111D09.1+ SGN-E262710- 0.925 602 0.993 C PGS_C10HBa0111D09.1+_SGN-E262710- (103410 104011) Alignment (genomic DNA sequence = upper lines): TTTTTTTCTG TCACAAATGG CAGATAAATT AAGTATTTAA AATACTAACA GTAAAGAACA 103469 |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| ||||||| || TTTTTTTCTG TCACAATTGG CAGATAAATT AAGTATTTAA AATACTAACA GTAAAGAGCA 60 AATCTTTACA CAAACTGTTT TTGATTTAAC GATAAAGTTT TTATGTTCTT TTAATCGTTA 103529 |||||||||| ||| |||||| ||||||||| |||||||||| ||||||| || |||||||||| AATCTTTACA CAACCTGTTT CTGATTTAAC GATAAAGTTT TTATGTTTTT TTAATCGTTA 120 ATCGAATGAA TTTTAAAAAT TCAAGCAGAG TAGAAAACCA TAAAGGTTTT AATCTCCAGA 103589 |||||||| | |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| ATCGAATG-A TTTTAAAAAT TCAAGTAGAG TAGAAAACCA TAAAGGTTTT AATCTCCAGA 179 AACCTCAAAT ACAGAAACTG TTTAAA-TTT CTTAAGATTG TTCTTCTTAC AATAACTTGT 103648 ||||||||| |||||||||| | |||| ||| |||||||||| || ||||| |||||||| | AACCTCAAAC ACAGAAACTG TATAAATTTT CTTAAGATTG TTACTCTTAT AATAACTTTT 239 ATTTATGAAG TTAATGAACA GAAACAGAAA CAAGATGAAG CAGAAAA-AA TTTAAAATAG 103707 |||||| ||| ||||| |||| |||||||||| ||||||||| ||||||| || | || |||| ATTTATAAAG TTAATAAACA GAAACAGAAA TAAGATGAAG CAGAAAATAA TATAGAATAC 299 AAGAATTAAT CCGAGTCCAC TGAAACTATT GTGTGTCCTT AAGAAATTTA A-TCCCTCAC 103766 |||||||||| |||||||||| ||||||| | ||||||||| |||||||||| | |||||||| AAGAATTAAT CCGAGTCCAC AGAAACTACT ATGTGTCCTT AAGAAATTTA ATTCCCTCAC 359 TGTACCCAAG GTTATGGATT AATTTCTCCC AAGATAAAAC AGATTAAACC TGTTAAATAA 103826 |||||||||| |||||||||| |||||||| | |||||||||| ||||||||| ||||||| || TGTACCCAAG GTTATGGATT AATTTCTCTC AAGATAAAAC GGATTAAACC TGTTAAAGAA 419 ATAGTGGTAC CTCAAACTTC TTTAACTTCA ACGAACTGTA -AACAGCAAC AAGTCACACT 103885 |||| ||||| |||||||||| |||||||||| ||||||| | |||| |||| ||||||||| ATAGCGGTAC CTCAAACTTC TTTAACTTCA ACGAACTTAA GAACAACAAC AAGTCACACA 479 GACTCAGTCG ATCGACACTT TGATTTTATT TGAGAGAAAA ATAAATGCAG AGAAAGAAAA 103945 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| GACTCAGTCG ATCGACACTT TGATTTTATT TGAGAGAAAA ATAAATGCAG AGAAAG-AAA 538 AATCTTCAGT GATTAAAAAA TCAAAAATTG ACTTCCTTTT ATAGCCATTT TCAGCAAGAA 104005 ||| |||||| | |||||||| |||||| ||| |||||||||| |||||||||| |||||||| | AATTTTCAGT GTTTAAAAAA TCAAAATTTG ACTTCCTTTT ATAGCCATTT TCAGCAAGGA 598 ACATGT 104011 |||||| ACATGT 604 hqPGS_C10HBa0111D09.1+_SGN-E262710- (103410 104011) ******************************************************************************** EST sequence 117 +strand 577 n (File: SGN-E369760+) 1 GGACATGTTC CTTGCTGAAA ATGGCTATAA AAGGAAGTCA AATTTTGATT TTTTAAACAC 61 TGAAAATTTT TCTTTCTCTG CATTTATTTT TCTCTCAAAT AAAATCAAAG TGTCGATCGA 121 CTGAGTCTGT GTGACTTGTT GTTGTTCTTA AGTTCGTTGA AGTTAAAGAA GTTTGAGGTA 181 CCGCTATTTC TTTAACAGGT TTAATCCGTT TTATCTTGAG AGAAATTAAT CCATAACCTT 241 GGGTACAGTG AGGGAATTAA ATTTCTTAAG GACACATAGT AGTTTCTGTG GACTCGGATT 301 AATTCTTGTA TTCTATATTA TTTTCTGCTT CATCTTATTT CTGTTTCTGT TTATTAACTT 361 TATAAATAAA AGTTATTATA AGAGTAACAA TCTTAAGAAA ATTTATACAG TTTCTGTGTT 421 TGAGGTTTCT GGAGATTAAA ACCTTTATGG TTTTCTACTC TACTTGAATT TTTAAAATCA 481 TTCGATTAAC GATTAAAAAA ACATAAAAAC TTTATCGTTA AATCAGAAAC AGGTTGTGTA 541 AAGATTTGCT CTTTACTGTT AGTATTTTAA ATACTTA Predicted gene structure (within gDNA segment 104703 to 102361): Exon 1 104011 103439 ( 573 n); cDNA 3 577 ( 575 n); score: 0.923 MATCH C10HBa0111D09.1- SGN-E369760+ 0.923 573 0.993 C PGS_C10HBa0111D09.1-_SGN-E369760+ (104011 103439) Alignment (genomic DNA sequence = upper lines): ACATGTTTCT TGCTGAAAAT GGCTATAAAA GGAAGTCAAT TTTTGATTTT TTAATCACTG 103952 ||||||| || |||||||||| |||||||||| ||||||||| |||||||||| |||| ||||| ACATGTTCCT TGCTGAAAAT GGCTATAAAA GGAAGTCAAA TTTTGATTTT TTAAACACTG 62 AAGATTTTTT CTTTCTCTGC ATTTATTTTT CTCTCAAATA AAATCAAAGT GTCGATCGAC 103892 || | ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AA-AATTTTT CTTTCTCTGC ATTTATTTTT CTCTCAAATA AAATCAAAGT GTCGATCGAC 121 TGAGTCAGTG TGACTTGTTG CTGTT-TACA GTTCGTTGAA GTTAAAGAAG TTTGAGGTAC 103833 |||||| ||| |||||||||| |||| | | |||||||||| |||||||||| |||||||||| TGAGTCTGTG TGACTTGTTG TTGTTCTTAA GTTCGTTGAA GTTAAAGAAG TTTGAGGTAC 181 CACTATTTAT TTAACAGGTT TAATCTGTTT TATCTTGGGA GAAATTAATC CATAACCTTG 103773 | |||||| | |||||||||| ||||| |||| ||||||| || |||||||||| |||||||||| CGCTATTTCT TTAACAGGTT TAATCCGTTT TATCTTGAGA GAAATTAATC CATAACCTTG 241 GGTACAGTGA GGG-ATTAAA TTTCTTAAGG ACACACAATA GTTTCAGTGG ACTCGGATTA 103714 |||||||||| ||| |||||| |||||||||| ||||| | || ||||| |||| |||||||||| GGTACAGTGA GGGAATTAAA TTTCTTAAGG ACACATAGTA GTTTCTGTGG ACTCGGATTA 301 ATTCTTCTAT TTTAAATT-T TTTCTGCTTC ATCTTGTTTC TGTTTCTGTT CATTAACTTC 103655 |||||| ||| | || ||| | |||||||||| ||||| |||| |||||||||| |||||||| ATTCTTGTAT TCTATATTAT TTTCTGCTTC ATCTTATTTC TGTTTCTGTT TATTAACTTT 361 ATAAATACAA GTTATTGTAA GAAGAACAAT CTTAAG-AAA TTTAAACAGT TTCTGTATTT 103596 ||||||| || |||||| ||| || |||||| |||||| ||| |||| ||||| |||||| ||| ATAAATAAAA GTTATTATAA GAGTAACAAT CTTAAGAAAA TTTATACAGT TTCTGTGTTT 421 GAGGTTTCTG GAGATTAAAA CCTTTATGGT TTTCTACTCT GCTTGAATTT TTAAAATTCA 103536 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||| ||| GAGGTTTCTG GAGATTAAAA CCTTTATGGT TTTCTACTCT ACTTGAATTT TTAAAA-TCA 480 TTCGATTAAC GATTAAAAGA ACATAAAAAC TTTATCGTTA AATCAAAAAC AGTTTGTGTA 103476 |||||||||| |||||||| | |||||||||| |||||||||| ||||| |||| || ||||||| TTCGATTAAC GATTAAAAAA ACATAAAAAC TTTATCGTTA AATCAGAAAC AGGTTGTGTA 540 AAGATTTGTT CTTTACTGTT AGTATTTTAA ATACTTA 103439 |||||||| | |||||||||| |||||||||| ||||||| AAGATTTGCT CTTTACTGTT AGTATTTTAA ATACTTA 577 hqPGS_C10HBa0111D09.1-_SGN-E369760+ (104011 103439) ******************************************************************************** EST sequence 71 -strand 514 n (File: SGN-E255327-) 1 TAAAGTTTTT ATGTTTTTTT AATCGTTAAT CGAATGATTT TAAAAATTCA AGTAGAGTAG 61 AAAACCATAA AGGTTTTAAT CTCCAGAAAC CTCAAACACA GAAACTGTAT AAATTTTCTT 121 AAGATTGTTA CTCTTATAAT AACTTTTATT TATAAAGTTA ATAAACAGAA ACAGAAATAA 181 GATGAAGCAG AAAATAATAT AGAATACAAG AATTAATCCG AGTCCACAGA AACTACTATG 241 TGTCCTTAAG AAATTTAATT CCCTCACTGT ACCCAAGGTT ATGGATTAAT TTCTCTCAAG 301 ATAAAACGGA TTAAACCTGT TAAAGAAATA GCGGTACCTC AAACTTCTTT AACTTCAACG 361 AACTTAAGAA CAACAACAAG TCACACAGAC TCAGTCGATC GACACTTTGA TTTTATTTGA 421 GAGAAAAATA AATGCAGAGA AAGAAAAATT TTCAGTGTTT CAAAAATCAA AATTTGACTT 481 CCTTTTATAG CCATTTTCAG CAAGGAACAT GTCC Predicted gene structure (within gDNA segment 102748 to 104703): Exon 1 103502 104011 ( 510 n); cDNA 1 512 ( 512 n); score: 0.918 MATCH C10HBa0111D09.1+ SGN-E255327- 0.918 510 0.992 C PGS_C10HBa0111D09.1+_SGN-E255327- (103502 104011) Alignment (genomic DNA sequence = upper lines): TAAAGTTTTT ATGTTCTTTT AATCGTTAAT CGAATGAATT TTAAAAATTC AAGCAGAGTA 103561 |||||||||| ||||| |||| |||||||||| |||||| ||| |||||||||| ||| |||||| TAAAGTTTTT ATGTTTTTTT AATCGTTAAT CGAATG-ATT TTAAAAATTC AAGTAGAGTA 59 GAAAACCATA AAGGTTTTAA TCTCCAGAAA CCTCAAATAC AGAAACTGTT TAAA-TTTCT 103620 |||||||||| |||||||||| |||||||||| ||||||| || ||||||||| |||| ||||| GAAAACCATA AAGGTTTTAA TCTCCAGAAA CCTCAAACAC AGAAACTGTA TAAATTTTCT 119 TAAGATTGTT CTTCTTACAA TAACTTGTAT TTATGAAGTT AATGAACAGA AACAGAAACA 103680 |||||||||| ||||| || |||||| ||| |||| ||||| ||| |||||| |||||||| | TAAGATTGTT ACTCTTATAA TAACTTTTAT TTATAAAGTT AATAAACAGA AACAGAAATA 179 AGATGAAGCA GAAAA-AATT TAAAATAGAA GAATTAATCC GAGTCCACTG AAACTATTGT 103739 |||||||||| ||||| ||| || |||| || |||||||||| |||||||| | |||||| | | AGATGAAGCA GAAAATAATA TAGAATACAA GAATTAATCC GAGTCCACAG AAACTACTAT 239 GTGTCCTTAA GAAATTTAA- TCCCTCACTG TACCCAAGGT TATGGATTAA TTTCTCCCAA 103798 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| GTGTCCTTAA GAAATTTAAT TCCCTCACTG TACCCAAGGT TATGGATTAA TTTCTCTCAA 299 GATAAAACAG ATTAAACCTG TTAAATAAAT AGTGGTACCT CAAACTTCTT TAACTTCAAC 103858 |||||||| | |||||||||| ||||| |||| || ||||||| |||||||||| |||||||||| GATAAAACGG ATTAAACCTG TTAAAGAAAT AGCGGTACCT CAAACTTCTT TAACTTCAAC 359 GAACTGTA-A ACAGCAACAA GTCACACTGA CTCAGTCGAT CGACACTTTG ATTTTATTTG 103917 ||||| | | ||| |||||| ||||||| || |||||||||| |||||||||| |||||||||| GAACTTAAGA ACAACAACAA GTCACACAGA CTCAGTCGAT CGACACTTTG ATTTTATTTG 419 AGAGAAAAAT AAATGCAGAG AAAGAAAAAA TCTTCAGTGA TTAAAAAATC AAAAATTGAC 103977 |||||||||| |||||||||| |||| ||||| | ||||||| || ||||||| |||| ||||| AGAGAAAAAT AAATGCAGAG AAAG-AAAAA TTTTCAGTGT TTCAAAAATC AAAATTTGAC 478 TTCCTTTTAT AGCCATTTTC AGCAAGAAAC ATGT 104011 |||||||||| |||||||||| |||||| ||| |||| TTCCTTTTAT AGCCATTTTC AGCAAGGAAC ATGT 512 hqPGS_C10HBa0111D09.1+_SGN-E255327- (103502 104011) ******************************************************************************** EST sequence 56 +strand 397 n (File: SGN-E262800+) 1 CTTGCTGAAA ATGGCTATAA AAGGAAGTCA AATTTTGATT TTTTAAACAC TGAAAATTTT 61 TCTTTCTCTG CATTTATTTT TCTCTCAAAT AAAATCAAAG TGTCGATCGA CTGAGTCTGT 121 GTGACTTGTT GTTGTTCTTA AGTTCGTTGA AGTTAAAGAA GTTTGAGGTA CCGCTATTTC 181 TTTAACAGGT TTAATCCGTT TTATCTTGAG AGAAATTAAT CCATAACCTT GGGTACAGTG 241 AGGGAATTAA ATTTCTTAAG GACACATAGT AGTTTCTGTG GACTCGGATT AATTCTTGTA 301 TTCTATATTA TTTTCTGCTT CATCTTATTT CTGTTTCTGT TTATTAACTT TATAAATAAA 361 AGTTATTATA AGAGTAACAA TCTTAAGAAA ATTTATA Predicted gene structure (within gDNA segment 104603 to 102360): Exon 1 104003 103613 ( 391 n); cDNA 1 393 ( 393 n); score: 0.914 MATCH C10HBa0111D09.1- SGN-E262800+ 0.914 391 0.985 C PGS_C10HBa0111D09.1-_SGN-E262800+ (104003 103613) Alignment (genomic DNA sequence = upper lines): CTTGCTGAAA ATGGCTATAA AAGGAAGTCA ATTTTTGATT TTTTAATCAC TGAAGATTTT 103944 |||||||||| |||||||||| |||||||||| | |||||||| |||||| ||| |||| | ||| CTTGCTGAAA ATGGCTATAA AAGGAAGTCA AATTTTGATT TTTTAAACAC TGAA-AATTT 59 TTCTTTCTCT GCATTTATTT TTCTCTCAAA TAAAATCAAA GTGTCGATCG ACTGAGTCAG 103884 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | TTCTTTCTCT GCATTTATTT TTCTCTCAAA TAAAATCAAA GTGTCGATCG ACTGAGTCTG 119 TGTGACTTGT TGCTGTT-TA CAGTTCGTTG AAGTTAAAGA AGTTTGAGGT ACCACTATTT 103825 |||||||||| || |||| | ||||||||| |||||||||| |||||||||| ||| |||||| TGTGACTTGT TGTTGTTCTT AAGTTCGTTG AAGTTAAAGA AGTTTGAGGT ACCGCTATTT 179 ATTTAACAGG TTTAATCTGT TTTATCTTGG GAGAAATTAA TCCATAACCT TGGGTACAGT 103765 ||||||||| ||||||| || ||||||||| |||||||||| |||||||||| |||||||||| CTTTAACAGG TTTAATCCGT TTTATCTTGA GAGAAATTAA TCCATAACCT TGGGTACAGT 239 GAGGG-ATTA AATTTCTTAA GGACACACAA TAGTTTCAGT GGACTCGGAT TAATTCTTCT 103706 ||||| |||| |||||||||| ||||||| | ||||||| || |||||||||| |||||||| | GAGGGAATTA AATTTCTTAA GGACACATAG TAGTTTCTGT GGACTCGGAT TAATTCTTGT 299 ATTTTAAATT -TTTTCTGCT TCATCTTGTT TCTGTTTCTG TTCATTAACT TCATAAATAC 103647 ||| || ||| ||||||||| ||||||| || |||||||||| || ||||||| | ||||||| ATTCTATATT ATTTTCTGCT TCATCTTATT TCTGTTTCTG TTTATTAACT TTATAAATAA 359 AAGTTATTGT AAGAAGAACA ATCTTAAGAA ATTT 103613 |||||||| | |||| |||| |||||||||| | || AAGTTATTAT AAGAGTAACA ATCTTAAGAA AATT 393 hqPGS_C10HBa0111D09.1-_SGN-E262800+ (104003 103613) ******************************************************************************** EST sequence 109 +strand 329 n (File: SGN-E258205+) 1 AATTTTTCTT TCTCTGCATT TATTTTTCTC TCAAATAAAA TCAAAGTGTC GATCGACTGA 61 GTCTGTGTGA CTTGTTGTTG TTCTTAAGTT CGTTGAAGTT AAAGAAGTTT GAGGTACCGC 121 TATTTCTTTA ACAGGTTTAA TCCGTTTTAT CTTGAGAGAA ATTAATCCAT AACCTTGGGT 181 ACAGTGAGGG AATTAAATTT CTTAAGGACA CATAGTAGTT TCTGTGGACT CGGATTAATT 241 CTTGTATTCT ATATTATTTT CTGCTTCATC TTATTTCTGG TTCTGTTTAT TAACTTTATA 301 AATAAAAGGT ATTATAAGAG TAACAATCT Predicted gene structure (within gDNA segment 104566 to 102500): Exon 1 103946 103623 ( 324 n); cDNA 3 329 ( 327 n); score: 0.906 MATCH C10HBa0111D09.1- SGN-E258205+ 0.906 324 0.985 C PGS_C10HBa0111D09.1-_SGN-E258205+ (103946 103623) Alignment (genomic DNA sequence = upper lines): TTTTTCTTTC TCTGCATTTA TTTTTCTCTC AAATAAAATC AAAGTGTCGA TCGACTGAGT 103887 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTCTTTC TCTGCATTTA TTTTTCTCTC AAATAAAATC AAAGTGTCGA TCGACTGAGT 62 CAGTGTGACT TGTTGCTGTT -TACAGTTCG TTGAAGTTAA AGAAGTTTGA GGTACCACTA 103828 | |||||||| ||||| |||| | |||||| |||||||||| |||||||||| |||||| ||| CTGTGTGACT TGTTGTTGTT CTTAAGTTCG TTGAAGTTAA AGAAGTTTGA GGTACCGCTA 122 TTTATTTAAC AGGTTTAATC TGTTTTATCT TGGGAGAAAT TAATCCATAA CCTTGGGTAC 103768 ||| |||||| |||||||||| ||||||||| || ||||||| |||||||||| |||||||||| TTTCTTTAAC AGGTTTAATC CGTTTTATCT TGAGAGAAAT TAATCCATAA CCTTGGGTAC 182 AGTGAGGG-A TTAAATTTCT TAAGGACACA CAATAGTTTC AGTGGACTCG GATTAATTCT 103709 |||||||| | |||||||||| |||||||||| | ||||||| ||||||||| |||||||||| AGTGAGGGAA TTAAATTTCT TAAGGACACA TAGTAGTTTC TGTGGACTCG GATTAATTCT 242 TCTATTTTAA ATT-TTTTCT GCTTCATCTT GTTTCTGTTT CTGTTCATTA ACTTCATAAA 103650 | |||| || ||| |||||| |||||||||| |||||| || ||||| |||| |||| ||||| TGTATTCTAT ATTATTTTCT GCTTCATCTT ATTTCTGGTT CTGTTTATTA ACTTTATAAA 302 TACAAGTTAT TGTAAGAAGA ACAATCT 103623 || ||| ||| | ||||| | ||||||| TAAAAGGTAT TATAAGAGTA ACAATCT 329 hqPGS_C10HBa0111D09.1-_SGN-E258205+ (103946 103623) ******************************************************************************** EST sequence 65 +strand 227 n (File: SGN-E261310+) 1 GGACATGTTC CTTGCTGAAA ATGGCTATAA AAGGAAGTCA AATTTTGATT TTTTAAACAC 61 TGAAAATTTT TCTTTCTCTG CATTTATTTT TCTCTCAAAT AAAATCAAAG TGTCGATCGA 121 CTGAGTCTGT GTGACTTGTT GTTGTTCTTA AGTTCGTTGA AGTTAAAGAA GTTTGAGGTA 181 CCGCTATTTC TTTAACAGGT TTAATCCGTT TTATCTTGAG AGAAATT Predicted gene structure (within gDNA segment 104703 to 102988): Exon 1 104011 103787 ( 225 n); cDNA 3 227 ( 225 n); score: 0.931 MATCH C10HBa0111D09.1- SGN-E261310+ 0.931 225 0.991 C PGS_C10HBa0111D09.1-_SGN-E261310+ (104011 103787) Alignment (genomic DNA sequence = upper lines): ACATGTTTCT TGCTGAAAAT GGCTATAAAA GGAAGTCAAT TTTTGATTTT TTAATCACTG 103952 ||||||| || |||||||||| |||||||||| ||||||||| |||||||||| |||| ||||| ACATGTTCCT TGCTGAAAAT GGCTATAAAA GGAAGTCAAA TTTTGATTTT TTAAACACTG 62 AAGATTTTTT CTTTCTCTGC ATTTATTTTT CTCTCAAATA AAATCAAAGT GTCGATCGAC 103892 || | ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AA-AATTTTT CTTTCTCTGC ATTTATTTTT CTCTCAAATA AAATCAAAGT GTCGATCGAC 121 TGAGTCAGTG TGACTTGTTG CTGTT-TACA GTTCGTTGAA GTTAAAGAAG TTTGAGGTAC 103833 |||||| ||| |||||||||| |||| | | |||||||||| |||||||||| |||||||||| TGAGTCTGTG TGACTTGTTG TTGTTCTTAA GTTCGTTGAA GTTAAAGAAG TTTGAGGTAC 181 CACTATTTAT TTAACAGGTT TAATCTGTTT TATCTTGGGA GAAATT 103787 | |||||| | |||||||||| ||||| |||| ||||||| || |||||| CGCTATTTCT TTAACAGGTT TAATCCGTTT TATCTTGAGA GAAATT 227 hqPGS_C10HBa0111D09.1-_SGN-E261310+ (104011 103787) ******************************************************************************** EST sequence 89 +strand 658 n (File: SGN-E542859+) 1 GAGAGAACTG TCTCGAGTTT TTTTTTTTTT TTTTTTGGAG TAATTGTTAG TAAAAAAAAT 61 ATTTTTGAGC TAAAAACGTA ACGAGTTAAA AGATTGATCT ATATCGACTA GTTCAAACAT 121 ATTTTCGGCA TTGTTCTTTA TATATCAAAT ATCATTAATC ACTTGTTCAA GATAAACTCC 181 CAAATCTTAA CCACATTTTG GACCAAATTA TAATAATACC TTGTTCTTGT TGGGGTTTAG 241 CAAGTGTGAA TGGGAAAAAA AAAAGAGAAT ATGAAAGGTG AGGGAACTAC TCTGGAGGGA 301 AACTGAAAAG TCATTTGCAA AGTGCAAATG AAAATTCATT TCTCCCATAT CGGCAAAAGA 361 AAGGGAAATT GTTGTCGTTA TATAAGGAAA CACTTCCATT ACTTCTTAAA GAGCTAAGAA 421 GAAGATGCCC CCTCGCGCCG TCATCATCGC TCGGCTTTGG ATTTGGATTT GGCAAATGAT 481 GTGATTGGAT TGATAAATTT TTTGGACAAA ATTTATTTAA TCACTTTTTG TTAAATCAAA 541 TAAATCCTGT TAATATTTAT CTCTAATAAA TTTGCGGTTA ACGGTAACAT TTTGAAAAGT 601 TGTTACTCTT TCGGAAAAGT CGTTACTTTC CAAAAAGTCG TTATTTTCCT AACAGACA Predicted gene structure (within gDNA segment 108474 to 102883): Exon 1 107768 107754 ( 15 n); cDNA 202 216 ( 15 n); score: 0.600 Intron 1 107753 104333 (3421 n); Pd: 0.656 (s: 0), Pa: 0.000 (s: 0.82) Exon 2 104332 104193 ( 140 n); cDNA 217 355 ( 139 n); score: 0.857 PPA cDNA 36 17 MATCH C10HBa0111D09.1- SGN-E542859+ 0.857 155 0.236 C PGS_C10HBa0111D09.1-_SGN-E542859+ (107768 107754,104332 104193) Alignment (genomic DNA sequence = upper lines): ACAACATAAG AGGAAGTAGA GTTCTCAACC TTTCCTTTTA AAAATGACTT TCTATCCTGT 107709 || | || | | || ACCAAATTAT AATAA..... .......... .......... .......... .......... 216 CGAAATGGAT GACCCGTAGT AAAAAAAAAT TACGATGTCA ATCAAAGAAT GATCCTTTCT 107649 .......... .......... .......... .......... .......... .......... 216 CCCATGTTTT AAGTAAAATG TCTTACTTTT ACCCATACAA CAAGGGCATG CAAATAGACC 107589 .......... .......... .......... .......... .......... .......... 216 ATGTGTGCTC CAACCAGAAA ACATTCCATA AGCTGGAAAT TATTAATAGT CCACATAAGT 107529 .......... .......... .......... .......... .......... .......... 216 GCAGCTTGCA TTTGAAAATT CTCTTTCTTA TGAAAATCAT AAGTCTCAAC CCCGTCAACT 107469 .......... .......... .......... .......... .......... .......... 216 TATAATTTCT TTAATTCATC AATAAGAGGT TCTAAATATA TATCTATATT CTTAATGAGA 107409 .......... .......... .......... .......... .......... .......... 216 AGACTTAAGA ACAATAAGGG ATAGTTATGC ACATTTCGAG TAGCAAACTG TAAGGTGTAA 107349 .......... .......... .......... .......... .......... .......... 216 TGATTATTGG CCAACAAGAA TAAGGGTGTG TCGTATTCCC ATAAGGACTA AATCCATCAG 107289 .......... .......... .......... .......... .......... .......... 216 CTGCAAGTCC ATGTCTTATA TTTCGAGGCT CGCTTGCAAT GTTAGGATGA CACTGATCAA 107229 .......... .......... .......... .......... .......... .......... 216 ACTTCTCTCG TGCCTCTCCA TCACTTGGAT GACTCATTAC CCCAGGTTCT TGACGGTATT 107169 .......... .......... .......... .......... .......... .......... 216 TCCTGTGCCA TGTCATATGT TCAGTTGTCT TTGTTGACAT ATATAATCTC TACCACCTCG 107109 .......... .......... .......... .......... .......... .......... 216 GAGTTATAGG AAGGTAGCGG AGTACATTAT ATGGAACATC TTGTTGCCCT CCACTGAGTC 107049 .......... .......... .......... .......... .......... .......... 216 TTCTCTTAGG CTTGTAGCGT GGTTTGCCAC ACTTCAGACA ATCTCTTTTG TCTTTATTAT 106989 .......... .......... .......... .......... .......... .......... 216 CCTTGTAATA TAGGATAGAA CCTGTATGAC ACACATCTAT CTTTTCATAT CCTAGCCCAA 106929 .......... .......... .......... .......... .......... .......... 216 GTTTTGCAAC CATTTGTTTA GTCCTATAGC AATTTACATG TAATTTTGCA TCTTCAGGTA 106869 .......... .......... .......... .......... .......... .......... 216 AAGAACTCCT TCAAAAATAG GAAAATTTGA TTATAGAAAT TGTCACTCAT GATAGATTCA 106809 .......... .......... .......... .......... .......... .......... 216 GACTTAATGT TCAACAACCT GCACACTGCT GATAGGAGAG AATGAGTTCG ACATCCATCA 106749 .......... .......... .......... .......... .......... .......... 216 AACAATGTCT CTTTACCAAC TTAGAACATT TCAAAAAATT CTTGAGCATT TTAATTAGGA 106689 .......... .......... .......... .......... .......... .......... 216 GGTTCTTTTC ATCAACATCC CTATAAAGCA CATCACTGTC TAGGTTGAAA CTAGGACCAA 106629 .......... .......... .......... .......... .......... .......... 216 CTGCATCCAT GATCATAGTA CAATATGGAT TTATTGGTGT TCTATTAGCA CCTATTTCAT 106569 .......... .......... .......... .......... .......... .......... 216 CACCTGTATT GGTACTGGGT TGAGGTCTAG TAATTGGTAC AAAAGACCTC CTATGTGATT 106509 .......... .......... .......... .......... .......... .......... 216 CCCATTAATA ATAGTTGGGC ATGAAACCAT GTTTGTATAA ATGAGATCTA ATACCATGAG 106449 .......... .......... .......... .......... .......... .......... 216 ATTCAAGAAA CCTACTACTG TTTTTACATT TTGAACAAGT GCACCTTATA CTTCCATTAG 106389 .......... .......... .......... .......... .......... .......... 216 AAACAAAATT AAGTTGCATT AATGCAAACA TTATAAATTC ATGCACACCT TCTATAAACT 106329 .......... .......... .......... .......... .......... .......... 216 TATAAGTGAC TTTTGTTCGA CTTGACACTT GTCTCTTATA CATCCACATG CGGTCAACTT 106269 .......... .......... .......... .......... .......... .......... 216 TAATGGAACT CATGCTTCCA ATCTAACAAA AAATGATGAA ACACTTCTTC TAGTACTTAA 106209 .......... .......... .......... .......... .......... .......... 216 TAATTTATTA ATTAGGTAGT AATCGGATAA ATGAAATTCA AATTTAAACA AAAATGACCA 106149 .......... .......... .......... .......... .......... .......... 216 TGCCACAAAT ATCTAATTTA AGAAGGGTTC AATAGCAACA TTTAACAAAG AGAAAGAATT 106089 .......... .......... .......... .......... .......... .......... 216 GTATTTTTCT AATACAAACA TAAATTTCCC TTCCTGTTAG TAAAGTCTAA AACATTTATG 106029 .......... .......... .......... .......... .......... .......... 216 TGAATTCTAT AAGGGATGAA AAAATTATAT AGAAGCATGT GCATTATACA GACTAACACT 105969 .......... .......... .......... .......... .......... .......... 216 ATTTAGTCAC CACAGTCCAA CACAAATCAG CCACAAAATC TCTTTTGATT CAAGGACTCC 105909 .......... .......... .......... .......... .......... .......... 216 ATAGAAGATA AATTGAAGTG CTCAAAGCTC CACCCTTGAA AGTAGAAGGT GCGCATGAAA 105849 .......... .......... .......... .......... .......... .......... 216 AGACACTTAT CGTGCAATCA AAAGGTCAAA AAATGAAGCA GTGGGCTGAA ACAACTTGAA 105789 .......... .......... .......... .......... .......... .......... 216 AAACTCGTAG ATTGTTACTT GCGGAGGCAC TAGAGTCATC CGAGTCATCA GCCAAAGTGT 105729 .......... .......... .......... .......... .......... .......... 216 TTGTCATAGA CACTCGAATA AGATGAGTTC TGTAGTTGTT TTCTTCCTTA ACATATTACC 105669 .......... .......... .......... .......... .......... .......... 216 ATCGAAAAGT TTAAGGTACA TTTAAATCAT CAACTCACAA GCATCTATAT ACTTTTTGTA 105609 .......... .......... .......... .......... .......... .......... 216 GATATGATAA GCTCTAAACA ATAGAAGGGA TTTTGAAGAA AAAAAACTGT AACAGGACAT 105549 .......... .......... .......... .......... .......... .......... 216 TAACTACATA AAGCCGAATA TGAAACTATC ACCAATTGCA ACGAAACAAT ATCTAATTCT 105489 .......... .......... .......... .......... .......... .......... 216 AAAATGGTCA CAAAAATTGA AGCAAAAATT CAAGAAAGCA ACTTGTGAAG CTAAAAGAGT 105429 .......... .......... .......... .......... .......... .......... 216 CACCTTGAGA ATAAGGTAGT GCTTGCACCA AATCTTAAAG GAAATGAAAA ACACAATAAA 105369 .......... .......... .......... .......... .......... .......... 216 AAGAATTGCA TTACATAAAC AGAGGTGCAC CTGGAAAGCT TCGATATTGA TTGAATTCAT 105309 .......... .......... .......... .......... .......... .......... 216 GAGTTAGTCT ATGACATTAT AATCACTCTT GATTTTGTAT CTCTATCAAA TTTTGATTCA 105249 .......... .......... .......... .......... .......... .......... 216 AAAGTTCAGT TCGTAGTAGT TGTTCTTGAT AGAAAAGTCT TTATGATGAG CTCACTTGAA 105189 .......... .......... .......... .......... .......... .......... 216 AATATAAATA TTGACTATTA GGTAATAACT CAAGTTTTTG TAAATGTCGT TGCTTCTTAT 105129 .......... .......... .......... .......... .......... .......... 216 TCTCCTTTTT TATGTTCGGG ACAAACATAA TTTTTAGAAG TAGATAATGT AATGACCCGT 105069 .......... .......... .......... .......... .......... .......... 216 TAGGCTATTT TGAGAACTAG TCATCTCTCT TTTTTATAAA GGATCCATTT CATAAATTTT 105009 .......... .......... .......... .......... .......... .......... 216 AACCGTGAAT TTTCAATTAT TCGTTCAACT ACAATTATTT AATAAGAGGT AAATTTTAAA 104949 .......... .......... .......... .......... .......... .......... 216 TATTTAATAT TATTAAGTTG TTAATGGATC AAATCCATAA GTTAATATCC TATACCACTT 104889 .......... .......... .......... .......... .......... .......... 216 GACCAATTTA CTGAAATAAG TTAAAGAAGA TTTTTATTTT TAATGGTACC ACAAACCATT 104829 .......... .......... .......... .......... .......... .......... 216 TTCCTAAATT CACCGCCGAA AGAGAACACG AACGACTCAG GTAAAAACCT ATCCTTTCTA 104769 .......... .......... .......... .......... .......... .......... 216 TGCAATCTTA TATTATGTAT ATGGATTGTT TATTGTATTA TTATTGTTAT TACCGGATGA 104709 .......... .......... .......... .......... .......... .......... 216 TTGGAGAAAG CTAACACCAA TAAATTTAAT TATCATATAG AGATTTGAAA AAAAAAAAAA 104649 .......... .......... .......... .......... .......... .......... 216 CTATGTGACA TTGAAGTTTT GGTTGAATAA AATAAGACTG ATGGAGGATT AAATTGTGGA 104589 .......... .......... .......... .......... .......... .......... 216 GAAATTATAA TTGGTGGGTT GATAGAGTTA TCCCCACTAC AACAACTATT GAAGTTTGTG 104529 .......... .......... .......... .......... .......... .......... 216 TAGGGTTACT AGAAAACAAA AGAAAAACAA TTGAGGTAGT CATCATTGCA TAATCGTGAG 104469 .......... .......... .......... .......... .......... .......... 216 ACTTTGAATT AGGAGATACA TTGTAGGCGT GAGTGCATTA ATTAAAAGGG TACCATTTAT 104409 .......... .......... .......... .......... .......... .......... 216 TCCTCTAAGT TTTATGGTTG TTGTTATTCA TATATAGGTT AGTTTTATGT ATATTTATTC 104349 .......... .......... .......... .......... .......... .......... 216 ATTCGTGATT GAATGTTATG TTGGGTGTGT TGGGTTTTAG CAAGTGTGAA TGGGAAAAGA 104289 || ||| ||| |||| ||||| |||||||||| |||||||| | .......... ......TACC TTGTTCTTGT TGGGGTTTAG CAAGTGTGAA TGGGAAAA-A 259 AAAGAGAGAA TATGACAAGT GAGGGAACTA CTTTGGAGGG AAAATGAAAA GTCATTTGCA 104229 ||| |||||| ||||| | || |||||||||| || ||||||| ||| |||||| |||||||||| AAAAAGAGAA TATGAAAGGT GAGGGAACTA CTCTGGAGGG AAACTGAAAA GTCATTTGCA 319 AAGTGCAAAT GAAAAGTCAT TTCTTATAAA TTTGCA 104193 |||||||||| ||||| |||| |||| | | | ||| AAGTGCAAAT GAAAATTCAT TTCTCCCATA TCGGCA 355 hqPGS_C10HBa0111D09.1-_SGN-E542859+ (104332 104193) ******************************************************************************** EST sequence 49 -strand 668 n (File: SGN-E380050-) 1 TTTACATCAA ATTCAATGTA ATACTAGTAT TATCATTCTA GTATTTGCAC TCATAAATGG 61 CTAGAGCCGT CAAAATGGGC TTGGCCTGCG AGGCCAGCCC AACCCTTGAA ATAAGTGGGG 121 TTGGGCTTAA TTTTTTTGGC CGATTTAGGA ATGAGGCTTT TAAGCCCGCC CCGTTTGGCC 181 CCTTTGCCTC ATAAGTCCAG CTCGCAAGCC ACATAGGTCA GCCCGCGGGC TATTAATTTT 241 TGAAAATATT TTAATATATA TTTTTAGTAG TGTTTTATTT GTCAAGATTT GATAAATAAA 301 TATTTTGAAG AAAAAAAAAA CAAAATTTTG CAATATCTTG TATGGTGAAT TATAGATGAA 361 GATGAACTTC TTAACGAAAC AATATCACAT GTTGATTCAA ATGTGATCGA TGGTGGAAGA 421 AGAAGCGGAG TCGTAAAACT TTAATTAGTG GGTCATGTAA TATTTAGTAA TTTAGATTTG 481 TTAAGTATTT GGGTTGCCTT GTGTTGCTGG AAATCTTTTA AATCAACTAG TTTTTTGTGG 541 GAGAAATGGT GGAATTATCA ACATTTATTT GTTAAATCTT ACGTTGGTTA TTATATATTT 601 TTGTAAGTAT TCACCAAAGT GTGATTCATA AATGTGTTTT TTGTAAGTAT TGACCGAAGT 661 GTGATTCA Predicted gene structure (within gDNA segment 107414 to 112179): Exon 1 108647 109264 ( 618 n); cDNA 57 666 ( 610 n); score: 0.831 MATCH C10HBa0111D09.1+ SGN-E380050- 0.831 618 0.925 C PGS_C10HBa0111D09.1+_SGN-E380050- (108647 109264) Alignment (genomic DNA sequence = upper lines): ATTGTGTGAG CCGTCAAAAT GGGCTTGGCC CACAAGGCCG GCCCAACCCA ACCCTTGAAA 108706 || | ||| |||||||||| |||||||||| | | | | ||| |||| |||||||||| ATGGCTAGAG CCGTCAAAAT GGGCTTGGCC TGC---G-AG G-CCAGCCCA ACCCTTGAAA 111 TAAGTGGGGT TGGGCTTAAT ATTTTTGGCC CATTTACGAA TGAGGCTTTT TAGCCCGCCC 108766 |||||||||| |||||||||| ||||||||| ||||| ||| |||||||||| ||||||||| TAAGTGGGGT TGGGCTTAAT TTTTTTGGCC GATTTAGGAA TGAGGCTTTT AAGCCCGCCC 171 CATTTGGTTT GTTGGCCTC- TTAGCCCAAC CCGCAAGCCT TAGATGCCAG CCCGTGGGCT 108825 | ||||| || ||||| | || ||| | |||||||| | | | ||| |||| ||||| CGTTTGGCCC CTTTGCCTCA TAAGTCCAGC TCGCAAGCCA CATAGGTCAG CCCGCGGGCT 231 ATTAATATTT TAAAATATTT TTATATATAT TTTTAATAAT GTTTTATTTG TAAAGATTTT 108885 |||||| ||| ||||||||| | |||||||| ||||| || | |||||||||| | ||||||| ATTAATTTTT GAAAATATTT TAATATATAT TTTTAGTAGT GTTTTATTTG TCAAGATTTG 291 ATGAATAAAT ATTTTGAATA ATAAAAAATC AAGTATTTTG AAATATCATC TTACATGGTA 108945 || ||||||| |||||||| | | |||||| | || |||||| | || ||| || ||||| ATAAATAAAT ATTTTGAAGA AAAAAAAAAC AA-AATTTTG -CA-AT-ATC TTGTATGGTG 347 AACTGTAGAT GAAGATGAAC TTCTTAATAA AATAATATCA TACATTGATT CAAATGTGAT 109005 || | ||||| |||||||||| ||||||| | || ||||||| | |||||| |||||||||| AATTATAGAT GAAGATGAAC TTCTTAACGA AACAATATCA CATGTTGATT CAAATGTGAT 407 CGATAGTTGA AGTAGAAGCG GAGTTATAAA ACATTAATTA ATGAGTCATG TAATATTTAG 109065 |||| || || || ||||||| |||| |||| || ||||||| || |||||| |||||||||| CGATGGTGGA AGAAGAAGCG GAGTCGTAAA ACTTTAATTA GTGGGTCATG TAATATTTAG 467 AAATTTAGAT TTGTCAAGTA TTTAGGTTGT CTTGTGTTGC TGGAAATCTT TTAAACCAGC 109125 ||||||||| |||| ||||| ||| ||||| |||||||||| |||||||||| ||||| || | TAATTTAGAT TTGTTAAGTA TTTGGGTTGC CTTGTGTTGC TGGAAATCTT TTAAATCAAC 527 TAGTTTTTTG TGGGAGAAAT GATGG-A--A TCAACATTTG TCTACTAAAT CTTACGTTGA 109182 |||||||||| |||||||||| | ||| | | ||||||||| | | ||||| ||||||||| TAGTTTTTTG TGGGAGAAAT GGTGGAATTA TCAACATTTA TTTGTTAAAT CTTACGTTGG 587 CTATTATGTA TTTTTTTAAG TATTCACCAA AGTGTGTGAT TCATAAATGT -ATTTTTGTA 109241 |||||| || ||||| |||| |||||||||| | ||||||| |||||||||| |||||||| TTATTATATA TTTTTGTAAG TATTCACCAA A--GTGTGAT TCATAAATGT GTTTTTTGTA 645 AGTATTCATT GAAGCGTGTG ATT 109264 |||||| | ||| ||||| ||| AGTATTGACC GAA--GTGTG ATT 666 hqPGS_C10HBa0111D09.1+_SGN-E380050- (108647 109264) ******************************************************************************** EST sequence 7 +strand 720 n (File: SGN-E379349+) 1 CCATATCAAG GTCCCTGTTG GAATGTCTAT GTTAGAAGCT GCACATGAAA ATGACATTGA 61 ACTTGAAGGA GCATGTGAAG CTTCGCTTGC CTGTTCCACA TGTCATGTGA TTGTTATGGA 121 TATGGAGTAT TACAACAAGC TAGAAGATCC AACAGATGAA GAAAATGATA TGTTGGATCT 181 TGCTTTTGCT CTCACCGACA GGTCACGTCT AGGTTGTCAG GTAATTGCAA AACCTGAACT 241 TGATGGCATT CGATTAGCTC TCCCTGTTGC CACAAGAAAC TTTGCTGTTG ATGGTTATAA 301 ACCGAAACCA CATTAGAACT TTTTCTACCA TAGATAAAAG ATTTTATGGT TCATGTCTAA 361 CAAACACACG AGTCAACAGA TTTTGTGGGA TGATTATACT TATAGGAACC ATTTTGATTA 421 CTTATTTACT TGTATCACTG GTAATATTCC GGGCGATATA CTGGATTCAT CGTCGTGGTG 481 TCTGCTTGTC CATCCTCACA ATAATACTCA CACTAGTTCT GCAGAAACCT CTGTATTCTT 541 TTACATCAAA TTCAATGTAA TACTAGTATT ATCATTCTAG TATTTGCACT CATAAATGGC 601 TAGAGCCGTC AAAATGGGCT TGGCCTGCGA GGCCAGCCCA ACCCTTGAAA TAAGTGGGGT 661 TGGGGCTTAT TTTTTTTGGC CGATTTAGGA ATGAGGCTTT TAAGCCCGCC CCGTTTGGCC Predicted gene structure (within gDNA segment 102034 to 109890): Exon 1 108647 108773 ( 127 n); cDNA 596 718 ( 123 n); score: 0.831 MATCH C10HBa0111D09.1+ SGN-E379349+ 0.831 127 0.176 C PGS_C10HBa0111D09.1+_SGN-E379349+ (108647 108773) Alignment (genomic DNA sequence = upper lines): ATTGTGTGAG CCGTCAAAAT GGGCTTGGCC CACAAGGCCG GCCCAACCCA ACCCTTGAAA 108706 || | ||| |||||||||| |||||||||| | ||| | || |||| |||||||||| ATGGCTAGAG CCGTCAAAAT GGGCTTGGCC TGCGAGG-C- ---CAGCCCA ACCCTTGAAA 650 TAAGTGGGGT T-GGGCTTAA TATTTTTGGC CCATTTACGA ATGAGGCTTT TTAGCCCGCC 108765 |||||||||| | ||||||| | |||||||| | ||||| || |||||||||| | |||||||| TAAGTGGGGT TGGGGCTTAT TTTTTTTGGC CGATTTAGGA ATGAGGCTTT TAAGCCCGCC 710 CCATTTGG 108773 || ||||| CCGTTTGG 718 hqPGS_C10HBa0111D09.1+_SGN-E379349+ (108647 108773) ******************************************************************************** EST sequence 77 +strand 551 n (File: SGN-E336498+) 1 TGAAATCGAA TTGTAGCAGT AAGAATGCCG TTGAAGGTGT TGGACGCGAC CATAACAACT 61 TTTGATGGAG TTTTTGAAAA GTTTAAAGCA GAGTCGCCCA AAAACAAAGC CAATTTCATC 121 CTGTTCCTGG CTGATATAGA CCCTTCTACC AACCTTAGTT GGTGCCCTGA TTGTGTAAGA 181 GCTGAACCTG TGATATACAA GAAACTGGAA GCATCATATG ATGATATAGC ACTTCTGAGG 241 GCTTATGTCG GGGACAGACC TACTTGGAGG ACTCCACAGC ACCCATGGCG AGTAGATGGG 301 AGGTTCAACC TCAAAGGGGT ACCAACCTTA ATCAGATGGG AAAATGATGC AATCAAAGGT 361 CGTCTTGAAG ACCATGAAGC ACACCTTGAT CACAAAATTG GTTCCCTTCT GAATGAAGCT 421 TAAAGTGTCC CATTAACTAC TTCAAGGGGC TGCCTTATAT TATGAGAGTG CCTTAATAAA 481 ATATGCGAAA CTTCATTGGC CTGAATGAAC CTCATTTAAG AAGCCGGGAA TATGATGACT 541 CAATGCTAGT G Predicted gene structure (within gDNA segment 122432 to 115593): Exon 1 121832 121664 ( 169 n); cDNA 1 169 ( 169 n); score: 0.994 Intron 1 121663 116810 (4854 n); Pd: 0.484 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 116809 116428 ( 382 n); cDNA 170 551 ( 382 n); score: 0.995 MATCH C10HBa0111D09.1- SGN-E336498+ 0.995 551 1.000 C PGS_C10HBa0111D09.1-_SGN-E336498+ (121832 121664,116809 116428) Alignment (genomic DNA sequence = upper lines): TGAAATCGAA TTGTAGCAGT AAGAATGCCG TTGAAGGTGT TGGACGCAAC CATAACAACT 121773 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| TGAAATCGAA TTGTAGCAGT AAGAATGCCG TTGAAGGTGT TGGACGCGAC CATAACAACT 60 TTTGATGGAG TTTTTGAAAA GTTTAAAGCA GAGTCGCCCA AAAACAAAGC CAATTTCATC 121713 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGATGGAG TTTTTGAAAA GTTTAAAGCA GAGTCGCCCA AAAACAAAGC CAATTTCATC 120 CTGTTCCTGG CTGATATAGA CCCTTCTACC AACCTTAGTT GGTGCCCTGG TAATTCTTAA 121653 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CTGTTCCTGG CTGATATAGA CCCTTCTACC AACCTTAGTT GGTGCCCTG. .......... 169 AACACCTAGA CAGATTTTAT TGCGTTTGCT GGTGCTCTTG ATACGAGCCA CTAAAATTTG 121593 .......... .......... .......... .......... .......... .......... 169 TTTCACATAA ATTTGATTAT GAATTCTATA TAGTATTTTT TCCAAATATG TTGTACTGTC 121533 .......... .......... .......... .......... .......... .......... 169 GAACGATTAT CATACTCTAC CATGAACTCT ACCGTCTTTC TCAGCTTGTG GTATTGTATG 121473 .......... .......... .......... .......... .......... .......... 169 TTCTAATCAT GGTTGCTGGG CCTACTGTAG AATTAGTTTG AGTTTGTCTG TACTGATTCA 121413 .......... .......... .......... .......... .......... .......... 169 TGTGGGCAGT GGCGGATCCA GAAATTTTAC ATCAGGGGTG CTCAACTACA TACATTTAAA 121353 .......... .......... .......... .......... .......... .......... 169 TGAATTACTA AATTTCGTAA ATAAATAATA ACATTGTCAC TAAAGGCAGT GGATGCTTAA 121293 .......... .......... .......... .......... .......... .......... 169 TGTACAACAT AGGTCCACCA CTGTATGCGT GTAGCTGTAA TAAACGATAA TGTAACAGCA 121233 .......... .......... .......... .......... .......... .......... 169 ACCGATTCCA GATTTGTATT GATAGAAACT GACTCAATTA CAATAGCTAA TAATCAAACT 121173 .......... .......... .......... .......... .......... .......... 169 GATACTTAAA TGACAGAATT ATGATTGAAG TAGTGAAAAT AACATAGCTA GAGATATTAG 121113 .......... .......... .......... .......... .......... .......... 169 AGAAGGAGAT GAGATACTGG AACATAGAAG AGGATGAGGG GATAGCAGAC TTTACAAAAG 121053 .......... .......... .......... .......... .......... .......... 169 TGCAATATAA TTCTCATAAA CCTATATTGC TCTCACAGTT CGCTTTTTGT CAACTCCGAT 120993 .......... .......... .......... .......... .......... .......... 169 TCCAGGCATA GCCACTTAAA TTGTTGTTGG GATGCTTTGC TAATACCGAT CAAGACCTAT 120933 .......... .......... .......... .......... .......... .......... 169 TCATAACAAT ACCTCCATCC CCAATTAGAA CTTTGTCCTC AATGTTCGGT TCGAGTCAGG 120873 .......... .......... .......... .......... .......... .......... 169 AACAGTGATG CTCAGGGGCT CCCTACTGAT TATCCCAATA CCAAGACATG CTTTATGACT 120813 .......... .......... .......... .......... .......... .......... 169 TGAAAAAAAT GTGTGCCCTA GTGCACCTGT TATGGAACAA TCAAAACCGT GGTCGTTGTG 120753 .......... .......... .......... .......... .......... .......... 169 GCCTTTAGTG AACGGTAACA GATTTGTTAA CTCAAGTGTC ATTGTAACCA GCCCTGCATA 120693 .......... .......... .......... .......... .......... .......... 169 GACATGACTT TGATTGCCCT CTTTTTGGAG CAGTTAGCAG TAAGCTAAAT GAGAAAGCCA 120633 .......... .......... .......... .......... .......... .......... 169 AGGAAAGCAT TCCTGCAGCG AGCCTCCACA AAAGCATGAA CTCAGTTAAC TGGAAACCAT 120573 .......... .......... .......... .......... .......... .......... 169 CTTTTTGTGG CACGTGAAAC TCATCCAATC ATTTGATATC TTCCCAATCA GTACAAACAA 120513 .......... .......... .......... .......... .......... .......... 169 GAAAAAGATA CGTCATCTCA TGATCAAGCT TGAACAGGAA TGAATACATT ATGGTAGTGG 120453 .......... .......... .......... .......... .......... .......... 169 GTTTCAACTT TTGAAATCAA TAAGGGTTGA CCACCATGCC ATTTGCAACC AACATGGTGC 120393 .......... .......... .......... .......... .......... .......... 169 TTCGCTTGAG GCTTTTCTTT TTTAGCATAA TACCAAATTC TACTTCCACA CACATGTCAC 120333 .......... .......... .......... .......... .......... .......... 169 AACTCTTATT TGAAGACATA GGACAAAAGC TTATCTCCTC ATTGGCAAGT ATTTTGATGC 120273 .......... .......... .......... .......... .......... .......... 169 GGCAGTTGGG AGTGTAGTGA CAATATGGGT GTCTCACTTG TTGTTCGTGG ATGACACTTT 120213 .......... .......... .......... .......... .......... .......... 169 GTTTTTTTGT GATGCTAATG GGACTCAACC ACATTATTTA TGCCAAGTCC TCGCTTGGTT 120153 .......... .......... .......... .......... .......... .......... 169 TAAGGCCAAG TCCTCACTCG GCTAGCTACT AGAGGGGTAA TTTTGACAGC GAGAAATCAT 120093 .......... .......... .......... .......... .......... .......... 169 AGAAAGCAGA AGGATGCTTG CATCAGTTGG CTTTACATGT TTAAGGTTCG CGAGGACGCG 120033 .......... .......... .......... .......... .......... .......... 169 AATCATCTTC TACTACATTG TGGGACAACT ATGAGGTTGT GGTGGGATAT GTTTAGGTTG 119973 .......... .......... .......... .......... .......... .......... 169 TTTGGCACTT CATGGGCAAT GCCAGAATTT GTGGAAGATT TGATGATAAG TTGGTAGAGC 119913 .......... .......... .......... .......... .......... .......... 169 GGGAGAAGGA GAAAAAGACA GAGGGACTGG AATGTGGTTC CACTTGCTTT AATGTGGGTA 119853 .......... .......... .......... .......... .......... .......... 169 GGTTGGAGAG TGAAACAAGA GAGCTTTTGA AGGTGTAGAA TCGAGTTTCT CTCGGTTCAG 119793 .......... .......... .......... .......... .......... .......... 169 GAGAAGTCTC CGCTCTCTTA TTTTCTTTTG GTGTAAACAG AAAGTTCCTT GTATAGTAGA 119733 .......... .......... .......... .......... .......... .......... 169 TTCTTTACCT GTTGGTATAC CCCTTGTATA TACCGTCAAT TTGGCCATGT TATGAATAAA 119673 .......... .......... .......... .......... .......... .......... 169 ACACATTTAC ATGATTAAAA AGAATGATAA ACGACTCAAA ATATTCATCA CATTATCCAA 119613 .......... .......... .......... .......... .......... .......... 169 TAGCTTAGAT ATTCCATAGT TTACAATCTG AAATAAACCA AATTGTTGTC TGGCTTCTAG 119553 .......... .......... .......... .......... .......... .......... 169 TATTTCTTGG AGGAAACCAG CAAGAATGAT GTTTGTAAAT GGTTTGTCTA GATCAAGCGC 119493 .......... .......... .......... .......... .......... .......... 169 TGGGATGTTT CTACCTATTG TTGTATCGAA CACCGTAGTA GGTACATTGT CCCTATAGGT 119433 .......... .......... .......... .......... .......... .......... 169 TACTATAGCA TCACGCCTTG AGAGTATTCA TACATTTGAA GCATTTGCAA CATCTTGAAC 119373 .......... .......... .......... .......... .......... .......... 169 TTGAAGACCC TTACAGTAAA CAATAAGCAC ATGTACGAAA GAAGATATAC TCAGCTCTAC 119313 .......... .......... .......... .......... .......... .......... 169 ACCATCAAAG GAAGTCATAG CTTCTTAAAT TGTCCTCCTC ATATTTGCTC ATAGGGCTGG 119253 .......... .......... .......... .......... .......... .......... 169 AGAACACTTT ATCCAAATCA AAATGAAACT CTGATTCTGC AATAACAAGA GGTGCTGAGA 119193 .......... .......... .......... .......... .......... .......... 169 CCTCCTTGGA TTCGCACTTA TCGTGCAAGG ACACAACCAC GTCCAAGTGC TCTGGAGCAT 119133 .......... .......... .......... .......... .......... .......... 169 CAGGGTTAGT TTCGGAGGAG GCAGACAGTG TGTTCTCTAT GTTATCGAGG TGTCTGAGTA 119073 .......... .......... .......... .......... .......... .......... 169 TATGGGCATT ATTGTCCATC CGTACCATTA GCAAATCCTG GATGTATTGA GGTGATGATG 119013 .......... .......... .......... .......... .......... .......... 169 GATAATGGTA GAAAAGTATA GATCCATGTA GTCCAAATCA ATGAAAGAAC CAACGTAACA 118953 .......... .......... .......... .......... .......... .......... 169 GACGACAATG CAGAAGCAAC CAAACTCCCG ATTTATACTG ATAGGAACTG ACTCAATTAC 118893 .......... .......... .......... .......... .......... .......... 169 AGTATCAACT AATACTTGAA TGACAGTAAT ACAATTTAAG TGTGAAAATA ATATAGCTAG 118833 .......... .......... .......... .......... .......... .......... 169 GGATACTAGA GAGGGAGATG CGATGCTAGA ACATAGAAGG GGATGAGAAG ATAACAGACT 118773 .......... .......... .......... .......... .......... .......... 169 TTGCGAAATT GCAATATAAT TTGTATAAAC CTATTTGCTC TCACAGTTTG CTATTTATCA 118713 .......... .......... .......... .......... .......... .......... 169 ACCTGGATTC TAGGCATAGC CACTTAATCA AGTGTTAGCC TACTTTGCCA ATACTGGTCC 118653 .......... .......... .......... .......... .......... .......... 169 AGGCCTATCC ATAACAGTAG CTAATATCTG TTCATGTATT TGCTTTAGGA AGAACATTTT 118593 .......... .......... .......... .......... .......... .......... 169 TTTCGTTCTG GTTTATTTGA TGTTAGATAG AGCCTTTTAA CATAAAACAC TATTAGAGAT 118533 .......... .......... .......... .......... .......... .......... 169 ATTCAGCTAG AGAGCAGTTC AAAACTTAGT AGAGACAAAA AACACTAGGT GATTCTTCCC 118473 .......... .......... .......... .......... .......... .......... 169 ATTTGTCCTA GCCTTGGTGG ACAGAGTTAT TCGGTACCTG TCGCTGGTGG GTGGTAGCAA 118413 .......... .......... .......... .......... .......... .......... 169 GGTGGGAGGT GGCACGTATC TTGTGGAATT AGTCAAGGTG TAAAGCTGGC CCTGATACCG 118353 .......... .......... .......... .......... .......... .......... 169 GGGTCATAAA AAAATATATT CGATTAGGAA GCATTCCTCT AACAAGTGCT GTTTTTGGCA 118293 .......... .......... .......... .......... .......... .......... 169 TTATTGGATC CACGAGGAGA GACATGTAGC ATACCTCTCT CTGTGTAGAC GAAGACATAT 118233 .......... .......... .......... .......... .......... .......... 169 GGTCAGCTTT TATTTCTTAC CAACTTTCGT TGAATCTTCT TCAGAACTTT TCACTGGCAC 118173 .......... .......... .......... .......... .......... .......... 169 AGTGATGTAG GGCAGACAGA GAAATGTCTC TCATTTTCTG CTGGAACTTA TGAAGTTCTC 118113 .......... .......... .......... .......... .......... .......... 169 CTTGGGATGA AGGCATCGTC AAAATATGAA TACCATTGCT CCGTCATTCC TGCATCATTC 118053 .......... .......... .......... .......... .......... .......... 169 TGTTCCTTTT CAATGAAGTG GTATACCTTA AATGTGTTTC ACTTGTATCT GCTTTTTTGG 117993 .......... .......... .......... .......... .......... .......... 169 CCTATAGGCT ACTTCATCTT GTGCCTCCGT TTTTATTTTT CTAAGAATGA ACTCTTTTTT 117933 .......... .......... .......... .......... .......... .......... 169 GAGAATGGTG GTGCCTCTAT TTTTATATCT AGGAACTCTG ACATTCTGCA GTTGTATATT 117873 .......... .......... .......... .......... .......... .......... 169 CATTAAATTA ATAAGGTATC TTTCCTCTGT ATCTGCTTAA AATGTGATGG ATGATATTAT 117813 .......... .......... .......... .......... .......... .......... 169 ATTCAACTTT CAAGCTAACC TTTTGTTCTG CAATTTCCTG TTTTTAGTAG AATAACTTAT 117753 .......... .......... .......... .......... .......... .......... 169 TGCTTCGAAG CATGACTGAT TCTTCTTATC CGCATTTGGC TGCCTGTTAT TATCTAAGAG 117693 .......... .......... .......... .......... .......... .......... 169 TCTTTAAGTT TTCTTGTTCA ATTGCAGAAT TATGGTCCTC TAGTTCATGT AACATTCTTA 117633 .......... .......... .......... .......... .......... .......... 169 CAATTCCAAT ATGTTTCTAA GATTCTGGTC ATAGTTCATA TAATATCTTT TATTCCCCTT 117573 .......... .......... .......... .......... .......... .......... 169 CCAATAGACC ATTAACAATT TGAAGAGACT CAAACACCTG GGTATTTCAG TCAAATTATA 117513 .......... .......... .......... .......... .......... .......... 169 TAAAATAAAG CAAGATCTTT TTAAAAAATC TGAACTTGGT TAATTGAGAG TTTTAATGTC 117453 .......... .......... .......... .......... .......... .......... 169 GGACTAAGGG TTGAATCAGT TTCAAGGAAT TAGTATCATT GTCAACATAA GTAGCGTGCA 117393 .......... .......... .......... .......... .......... .......... 169 TCCATCTAAG TTTACGGATG AACTTCGTGA TTCTCCTCTG AATGTCTGAA CCTAGAATTG 117333 .......... .......... .......... .......... .......... .......... 169 CCATCTACTC TGTAGTATTG ACACTATCAA TATGATATAT TGGCCTCTCC TCTAGATACA 117273 .......... .......... .......... .......... .......... .......... 169 CACTTTTTCT TTCTTAGACC TTTATCTCAT ATTTTACTTA TTTAATTATC TTAAGAAGTA 117213 .......... .......... .......... .......... .......... .......... 169 TTTTTTAATT CATTGTTTCA TTTTGAACAT GTAGCAGTTA TTAGTTAAGT AAACAGGTGC 117153 .......... .......... .......... .......... .......... .......... 169 ACAATCATGA TTGTGCTATT ATTTCTGGTT TGAGGGTTGA ATTTTATACC ATTTTAATAA 117093 .......... .......... .......... .......... .......... .......... 169 ATTGAACCTT AAACTTGGAG ATCTGAAGTT GTTCTTCTAG TTCAGTCTAG CTTAACACTT 117033 .......... .......... .......... .......... .......... .......... 169 AATCAGCCTT GCATTTGCCA GTGTTGTGGA TTTTTTTGCA TACATCGTGT TGTCTTGGGG 116973 .......... .......... .......... .......... .......... .......... 169 GAAGGGAAGG CTTTTCTGCG AATTGTTTCG AATGATATTT AGATATTGTA TTATGTTGGA 116913 .......... .......... .......... .......... .......... .......... 169 CCTGCATGCA GTTTTCACTG CAGGTGAATG AATCAAGCGA TAGTTCTATC TTTACAATTT 116853 .......... .......... .......... .......... .......... .......... 169 GTGTATGTTA TTTGATATGA CATTGTTTTT TTGTTTGTAT TAGATTGTGT AAGAGCTGAA 116793 ||||||| |||||||||| .......... .......... .......... .......... ...ATTGTGT AAGAGCTGAA 186 CCTGTGATAT ACAAGAAACT GGAAGCATCA TATGATGATA TAGCACTTCT GAGGGCTTAT 116733 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTGTGATAT ACAAGAAACT GGAAGCATCA TATGATGATA TAGCACTTCT GAGGGCTTAT 246 GTCGGGGACA GACCTACTTG GAGGACTCCA CAGCACCCAT GGCGAGTAGA TGGGAGGTTC 116673 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCGGGGACA GACCTACTTG GAGGACTCCA CAGCACCCAT GGCGAGTAGA TGGGAGGTTC 306 AACCTCAAAG GGGTACCAAC CTTAATCAGA TGGGAAAATG ATGCAATCAA AGGTCGTCTT 116613 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACCTCAAAG GGGTACCAAC CTTAATCAGA TGGGAAAATG ATGCAATCAA AGGTCGTCTT 366 GAAGACCATG AAGCACACCT TGATCACAAA ATTGGTTCCC TTCTGAATGA AGCTTAAAGT 116553 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGACCATG AAGCACACCT TGATCACAAA ATTGGTTCCC TTCTGAATGA AGCTTAAAGT 426 GTCCCATTAA CTACTTCAAG GGGCTGCCTT ATATTATGAG AGTGCCTTAA TAAAATATGC 116493 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCCCATTAA CTACTTCAAG GGGCTGCCTT ATATTATGAG AGTGCCTTAA TAAAATATGC 486 GAAACTTCAT TGGCCTGAAT GAACCTCATT TAAGAAGCCG TGAATATGAT GACTCAGTGC 116433 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||| ||| GAAACTTCAT TGGCCTGAAT GAACCTCATT TAAGAAGCCG GGAATATGAT GACTCAATGC 546 TAGTG 116428 ||||| TAGTG 551 hqPGS_C10HBa0111D09.1-_SGN-E336498+ (121832 121664,116809 116428) ******************************************************************************** EST sequence 87 +strand 553 n (File: SGN-E276014+) 1 TAACTGAAAT CTAATTGTAC CAGTAAGAAT GCGGCCGAAG GTGTTGGACG CAACCATAAC 61 AACTTTTGAT GGAGTTTTTG AAAAGTTTAA AGCAGAGTCG CCCAAAAACA AAGCCAATTT 121 CATCCTGTTC CTGGCTGATA TAGACCCTTC TACCAACCTT AGTTGGTGCC CTGATTGTGT 181 AAGAGCTGAA CCTGTGATAT ACAAGAAACT GGAAGCATCA TATGATGATA TAGCACTTCT 241 GAGGGCTTAT GTCGGGGACA GACCTACTTG GAGGACTCCA CAGCACCCAT GGCGAGTAGA 301 TGGGAGGTTC AACCTCAAAG GGGTACCAAC CTTAATCAGA TGGGAAAATG ATGCAATCAA 361 AGGTCGTCTT GAAGACCATG AAGCACACCT TGATCACAAA ATTGGTTCCC TTGTGAATGA 421 AGCTTAAAGT GTCCCATTAA CTACTTCAAG GGGCTGCCTT ATATTATGAG AGTGCCTTAA 481 TAAAATATGC GAAACTTCAT TGGCCTGAAT GAACCTTATT TAAGAAGCCG TGAATATGAT 541 GACTCAATGC TAG Predicted gene structure (within gDNA segment 122760 to 115757): Exon 1 121836 121664 ( 173 n); cDNA 1 173 ( 173 n); score: 0.971 Intron 1 121663 116810 (4854 n); Pd: 0.484 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 116809 116430 ( 380 n); cDNA 174 553 ( 380 n); score: 0.992 MATCH C10HBa0111D09.1- SGN-E276014+ 0.986 553 1.000 C PGS_C10HBa0111D09.1-_SGN-E276014+ (121836 121664,116809 116430) Alignment (genomic DNA sequence = upper lines): TAACTGAAAT CGAATTGTAG CAGTAAGAAT GCCGTTGAAG GTGTTGGACG CAACCATAAC 121777 |||||||||| | ||||||| |||||||||| || | |||| |||||||||| |||||||||| TAACTGAAAT CTAATTGTAC CAGTAAGAAT GCGGCCGAAG GTGTTGGACG CAACCATAAC 60 AACTTTTGAT GGAGTTTTTG AAAAGTTTAA AGCAGAGTCG CCCAAAAACA AAGCCAATTT 121717 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTTTTGAT GGAGTTTTTG AAAAGTTTAA AGCAGAGTCG CCCAAAAACA AAGCCAATTT 120 CATCCTGTTC CTGGCTGATA TAGACCCTTC TACCAACCTT AGTTGGTGCC CTGGTAATTC 121657 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| CATCCTGTTC CTGGCTGATA TAGACCCTTC TACCAACCTT AGTTGGTGCC CTG....... 173 TTAAAACACC TAGACAGATT TTATTGCGTT TGCTGGTGCT CTTGATACGA GCCACTAAAA 121597 .......... .......... .......... .......... .......... .......... 173 TTTGTTTCAC ATAAATTTGA TTATGAATTC TATATAGTAT TTTTTCCAAA TATGTTGTAC 121537 .......... .......... .......... .......... .......... .......... 173 TGTCGAACGA TTATCATACT CTACCATGAA CTCTACCGTC TTTCTCAGCT TGTGGTATTG 121477 .......... .......... .......... .......... .......... .......... 173 TATGTTCTAA TCATGGTTGC TGGGCCTACT GTAGAATTAG TTTGAGTTTG TCTGTACTGA 121417 .......... .......... .......... .......... .......... .......... 173 TTCATGTGGG CAGTGGCGGA TCCAGAAATT TTACATCAGG GGTGCTCAAC TACATACATT 121357 .......... .......... .......... .......... .......... .......... 173 TAAATGAATT ACTAAATTTC GTAAATAAAT AATAACATTG TCACTAAAGG CAGTGGATGC 121297 .......... .......... .......... .......... .......... .......... 173 TTAATGTACA ACATAGGTCC ACCACTGTAT GCGTGTAGCT GTAATAAACG ATAATGTAAC 121237 .......... .......... .......... .......... .......... .......... 173 AGCAACCGAT TCCAGATTTG TATTGATAGA AACTGACTCA ATTACAATAG CTAATAATCA 121177 .......... .......... .......... .......... .......... .......... 173 AACTGATACT TAAATGACAG AATTATGATT GAAGTAGTGA AAATAACATA GCTAGAGATA 121117 .......... .......... .......... .......... .......... .......... 173 TTAGAGAAGG AGATGAGATA CTGGAACATA GAAGAGGATG AGGGGATAGC AGACTTTACA 121057 .......... .......... .......... .......... .......... .......... 173 AAAGTGCAAT ATAATTCTCA TAAACCTATA TTGCTCTCAC AGTTCGCTTT TTGTCAACTC 120997 .......... .......... .......... .......... .......... .......... 173 CGATTCCAGG CATAGCCACT TAAATTGTTG TTGGGATGCT TTGCTAATAC CGATCAAGAC 120937 .......... .......... .......... .......... .......... .......... 173 CTATTCATAA CAATACCTCC ATCCCCAATT AGAACTTTGT CCTCAATGTT CGGTTCGAGT 120877 .......... .......... .......... .......... .......... .......... 173 CAGGAACAGT GATGCTCAGG GGCTCCCTAC TGATTATCCC AATACCAAGA CATGCTTTAT 120817 .......... .......... .......... .......... .......... .......... 173 GACTTGAAAA AAATGTGTGC CCTAGTGCAC CTGTTATGGA ACAATCAAAA CCGTGGTCGT 120757 .......... .......... .......... .......... .......... .......... 173 TGTGGCCTTT AGTGAACGGT AACAGATTTG TTAACTCAAG TGTCATTGTA ACCAGCCCTG 120697 .......... .......... .......... .......... .......... .......... 173 CATAGACATG ACTTTGATTG CCCTCTTTTT GGAGCAGTTA GCAGTAAGCT AAATGAGAAA 120637 .......... .......... .......... .......... .......... .......... 173 GCCAAGGAAA GCATTCCTGC AGCGAGCCTC CACAAAAGCA TGAACTCAGT TAACTGGAAA 120577 .......... .......... .......... .......... .......... .......... 173 CCATCTTTTT GTGGCACGTG AAACTCATCC AATCATTTGA TATCTTCCCA ATCAGTACAA 120517 .......... .......... .......... .......... .......... .......... 173 ACAAGAAAAA GATACGTCAT CTCATGATCA AGCTTGAACA GGAATGAATA CATTATGGTA 120457 .......... .......... .......... .......... .......... .......... 173 GTGGGTTTCA ACTTTTGAAA TCAATAAGGG TTGACCACCA TGCCATTTGC AACCAACATG 120397 .......... .......... .......... .......... .......... .......... 173 GTGCTTCGCT TGAGGCTTTT CTTTTTTAGC ATAATACCAA ATTCTACTTC CACACACATG 120337 .......... .......... .......... .......... .......... .......... 173 TCACAACTCT TATTTGAAGA CATAGGACAA AAGCTTATCT CCTCATTGGC AAGTATTTTG 120277 .......... .......... .......... .......... .......... .......... 173 ATGCGGCAGT TGGGAGTGTA GTGACAATAT GGGTGTCTCA CTTGTTGTTC GTGGATGACA 120217 .......... .......... .......... .......... .......... .......... 173 CTTTGTTTTT TTGTGATGCT AATGGGACTC AACCACATTA TTTATGCCAA GTCCTCGCTT 120157 .......... .......... .......... .......... .......... .......... 173 GGTTTAAGGC CAAGTCCTCA CTCGGCTAGC TACTAGAGGG GTAATTTTGA CAGCGAGAAA 120097 .......... .......... .......... .......... .......... .......... 173 TCATAGAAAG CAGAAGGATG CTTGCATCAG TTGGCTTTAC ATGTTTAAGG TTCGCGAGGA 120037 .......... .......... .......... .......... .......... .......... 173 CGCGAATCAT CTTCTACTAC ATTGTGGGAC AACTATGAGG TTGTGGTGGG ATATGTTTAG 119977 .......... .......... .......... .......... .......... .......... 173 GTTGTTTGGC ACTTCATGGG CAATGCCAGA ATTTGTGGAA GATTTGATGA TAAGTTGGTA 119917 .......... .......... .......... .......... .......... .......... 173 GAGCGGGAGA AGGAGAAAAA GACAGAGGGA CTGGAATGTG GTTCCACTTG CTTTAATGTG 119857 .......... .......... .......... .......... .......... .......... 173 GGTAGGTTGG AGAGTGAAAC AAGAGAGCTT TTGAAGGTGT AGAATCGAGT TTCTCTCGGT 119797 .......... .......... .......... .......... .......... .......... 173 TCAGGAGAAG TCTCCGCTCT CTTATTTTCT TTTGGTGTAA ACAGAAAGTT CCTTGTATAG 119737 .......... .......... .......... .......... .......... .......... 173 TAGATTCTTT ACCTGTTGGT ATACCCCTTG TATATACCGT CAATTTGGCC ATGTTATGAA 119677 .......... .......... .......... .......... .......... .......... 173 TAAAACACAT TTACATGATT AAAAAGAATG ATAAACGACT CAAAATATTC ATCACATTAT 119617 .......... .......... .......... .......... .......... .......... 173 CCAATAGCTT AGATATTCCA TAGTTTACAA TCTGAAATAA ACCAAATTGT TGTCTGGCTT 119557 .......... .......... .......... .......... .......... .......... 173 CTAGTATTTC TTGGAGGAAA CCAGCAAGAA TGATGTTTGT AAATGGTTTG TCTAGATCAA 119497 .......... .......... .......... .......... .......... .......... 173 GCGCTGGGAT GTTTCTACCT ATTGTTGTAT CGAACACCGT AGTAGGTACA TTGTCCCTAT 119437 .......... .......... .......... .......... .......... .......... 173 AGGTTACTAT AGCATCACGC CTTGAGAGTA TTCATACATT TGAAGCATTT GCAACATCTT 119377 .......... .......... .......... .......... .......... .......... 173 GAACTTGAAG ACCCTTACAG TAAACAATAA GCACATGTAC GAAAGAAGAT ATACTCAGCT 119317 .......... .......... .......... .......... .......... .......... 173 CTACACCATC AAAGGAAGTC ATAGCTTCTT AAATTGTCCT CCTCATATTT GCTCATAGGG 119257 .......... .......... .......... .......... .......... .......... 173 CTGGAGAACA CTTTATCCAA ATCAAAATGA AACTCTGATT CTGCAATAAC AAGAGGTGCT 119197 .......... .......... .......... .......... .......... .......... 173 GAGACCTCCT TGGATTCGCA CTTATCGTGC AAGGACACAA CCACGTCCAA GTGCTCTGGA 119137 .......... .......... .......... .......... .......... .......... 173 GCATCAGGGT TAGTTTCGGA GGAGGCAGAC AGTGTGTTCT CTATGTTATC GAGGTGTCTG 119077 .......... .......... .......... .......... .......... .......... 173 AGTATATGGG CATTATTGTC CATCCGTACC ATTAGCAAAT CCTGGATGTA TTGAGGTGAT 119017 .......... .......... .......... .......... .......... .......... 173 GATGGATAAT GGTAGAAAAG TATAGATCCA TGTAGTCCAA ATCAATGAAA GAACCAACGT 118957 .......... .......... .......... .......... .......... .......... 173 AACAGACGAC AATGCAGAAG CAACCAAACT CCCGATTTAT ACTGATAGGA ACTGACTCAA 118897 .......... .......... .......... .......... .......... .......... 173 TTACAGTATC AACTAATACT TGAATGACAG TAATACAATT TAAGTGTGAA AATAATATAG 118837 .......... .......... .......... .......... .......... .......... 173 CTAGGGATAC TAGAGAGGGA GATGCGATGC TAGAACATAG AAGGGGATGA GAAGATAACA 118777 .......... .......... .......... .......... .......... .......... 173 GACTTTGCGA AATTGCAATA TAATTTGTAT AAACCTATTT GCTCTCACAG TTTGCTATTT 118717 .......... .......... .......... .......... .......... .......... 173 ATCAACCTGG ATTCTAGGCA TAGCCACTTA ATCAAGTGTT AGCCTACTTT GCCAATACTG 118657 .......... .......... .......... .......... .......... .......... 173 GTCCAGGCCT ATCCATAACA GTAGCTAATA TCTGTTCATG TATTTGCTTT AGGAAGAACA 118597 .......... .......... .......... .......... .......... .......... 173 TTTTTTTCGT TCTGGTTTAT TTGATGTTAG ATAGAGCCTT TTAACATAAA ACACTATTAG 118537 .......... .......... .......... .......... .......... .......... 173 AGATATTCAG CTAGAGAGCA GTTCAAAACT TAGTAGAGAC AAAAAACACT AGGTGATTCT 118477 .......... .......... .......... .......... .......... .......... 173 TCCCATTTGT CCTAGCCTTG GTGGACAGAG TTATTCGGTA CCTGTCGCTG GTGGGTGGTA 118417 .......... .......... .......... .......... .......... .......... 173 GCAAGGTGGG AGGTGGCACG TATCTTGTGG AATTAGTCAA GGTGTAAAGC TGGCCCTGAT 118357 .......... .......... .......... .......... .......... .......... 173 ACCGGGGTCA TAAAAAAATA TATTCGATTA GGAAGCATTC CTCTAACAAG TGCTGTTTTT 118297 .......... .......... .......... .......... .......... .......... 173 GGCATTATTG GATCCACGAG GAGAGACATG TAGCATACCT CTCTCTGTGT AGACGAAGAC 118237 .......... .......... .......... .......... .......... .......... 173 ATATGGTCAG CTTTTATTTC TTACCAACTT TCGTTGAATC TTCTTCAGAA CTTTTCACTG 118177 .......... .......... .......... .......... .......... .......... 173 GCACAGTGAT GTAGGGCAGA CAGAGAAATG TCTCTCATTT TCTGCTGGAA CTTATGAAGT 118117 .......... .......... .......... .......... .......... .......... 173 TCTCCTTGGG ATGAAGGCAT CGTCAAAATA TGAATACCAT TGCTCCGTCA TTCCTGCATC 118057 .......... .......... .......... .......... .......... .......... 173 ATTCTGTTCC TTTTCAATGA AGTGGTATAC CTTAAATGTG TTTCACTTGT ATCTGCTTTT 117997 .......... .......... .......... .......... .......... .......... 173 TTGGCCTATA GGCTACTTCA TCTTGTGCCT CCGTTTTTAT TTTTCTAAGA ATGAACTCTT 117937 .......... .......... .......... .......... .......... .......... 173 TTTTGAGAAT GGTGGTGCCT CTATTTTTAT ATCTAGGAAC TCTGACATTC TGCAGTTGTA 117877 .......... .......... .......... .......... .......... .......... 173 TATTCATTAA ATTAATAAGG TATCTTTCCT CTGTATCTGC TTAAAATGTG ATGGATGATA 117817 .......... .......... .......... .......... .......... .......... 173 TTATATTCAA CTTTCAAGCT AACCTTTTGT TCTGCAATTT CCTGTTTTTA GTAGAATAAC 117757 .......... .......... .......... .......... .......... .......... 173 TTATTGCTTC GAAGCATGAC TGATTCTTCT TATCCGCATT TGGCTGCCTG TTATTATCTA 117697 .......... .......... .......... .......... .......... .......... 173 AGAGTCTTTA AGTTTTCTTG TTCAATTGCA GAATTATGGT CCTCTAGTTC ATGTAACATT 117637 .......... .......... .......... .......... .......... .......... 173 CTTACAATTC CAATATGTTT CTAAGATTCT GGTCATAGTT CATATAATAT CTTTTATTCC 117577 .......... .......... .......... .......... .......... .......... 173 CCTTCCAATA GACCATTAAC AATTTGAAGA GACTCAAACA CCTGGGTATT TCAGTCAAAT 117517 .......... .......... .......... .......... .......... .......... 173 TATATAAAAT AAAGCAAGAT CTTTTTAAAA AATCTGAACT TGGTTAATTG AGAGTTTTAA 117457 .......... .......... .......... .......... .......... .......... 173 TGTCGGACTA AGGGTTGAAT CAGTTTCAAG GAATTAGTAT CATTGTCAAC ATAAGTAGCG 117397 .......... .......... .......... .......... .......... .......... 173 TGCATCCATC TAAGTTTACG GATGAACTTC GTGATTCTCC TCTGAATGTC TGAACCTAGA 117337 .......... .......... .......... .......... .......... .......... 173 ATTGCCATCT ACTCTGTAGT ATTGACACTA TCAATATGAT ATATTGGCCT CTCCTCTAGA 117277 .......... .......... .......... .......... .......... .......... 173 TACACACTTT TTCTTTCTTA GACCTTTATC TCATATTTTA CTTATTTAAT TATCTTAAGA 117217 .......... .......... .......... .......... .......... .......... 173 AGTATTTTTT AATTCATTGT TTCATTTTGA ACATGTAGCA GTTATTAGTT AAGTAAACAG 117157 .......... .......... .......... .......... .......... .......... 173 GTGCACAATC ATGATTGTGC TATTATTTCT GGTTTGAGGG TTGAATTTTA TACCATTTTA 117097 .......... .......... .......... .......... .......... .......... 173 ATAAATTGAA CCTTAAACTT GGAGATCTGA AGTTGTTCTT CTAGTTCAGT CTAGCTTAAC 117037 .......... .......... .......... .......... .......... .......... 173 ACTTAATCAG CCTTGCATTT GCCAGTGTTG TGGATTTTTT TGCATACATC GTGTTGTCTT 116977 .......... .......... .......... .......... .......... .......... 173 GGGGGAAGGG AAGGCTTTTC TGCGAATTGT TTCGAATGAT ATTTAGATAT TGTATTATGT 116917 .......... .......... .......... .......... .......... .......... 173 TGGACCTGCA TGCAGTTTTC ACTGCAGGTG AATGAATCAA GCGATAGTTC TATCTTTACA 116857 .......... .......... .......... .......... .......... .......... 173 ATTTGTGTAT GTTATTTGAT ATGACATTGT TTTTTTGTTT GTATTAGATT GTGTAAGAGC 116797 ||| |||||||||| .......... .......... .......... .......... .......ATT GTGTAAGAGC 186 TGAACCTGTG ATATACAAGA AACTGGAAGC ATCATATGAT GATATAGCAC TTCTGAGGGC 116737 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAACCTGTG ATATACAAGA AACTGGAAGC ATCATATGAT GATATAGCAC TTCTGAGGGC 246 TTATGTCGGG GACAGACCTA CTTGGAGGAC TCCACAGCAC CCATGGCGAG TAGATGGGAG 116677 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATGTCGGG GACAGACCTA CTTGGAGGAC TCCACAGCAC CCATGGCGAG TAGATGGGAG 306 GTTCAACCTC AAAGGGGTAC CAACCTTAAT CAGATGGGAA AATGATGCAA TCAAAGGTCG 116617 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCAACCTC AAAGGGGTAC CAACCTTAAT CAGATGGGAA AATGATGCAA TCAAAGGTCG 366 TCTTGAAGAC CATGAAGCAC ACCTTGATCA CAAAATTGGT TCCCTTCTGA ATGAAGCTTA 116557 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| TCTTGAAGAC CATGAAGCAC ACCTTGATCA CAAAATTGGT TCCCTTGTGA ATGAAGCTTA 426 AAGTGTCCCA TTAACTACTT CAAGGGGCTG CCTTATATTA TGAGAGTGCC TTAATAAAAT 116497 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTGTCCCA TTAACTACTT CAAGGGGCTG CCTTATATTA TGAGAGTGCC TTAATAAAAT 486 ATGCGAAACT TCATTGGCCT GAATGAACCT CATTTAAGAA GCCGTGAATA TGATGACTCA 116437 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| ATGCGAAACT TCATTGGCCT GAATGAACCT TATTTAAGAA GCCGTGAATA TGATGACTCA 546 GTGCTAG 116430 |||||| ATGCTAG 553 hqPGS_C10HBa0111D09.1-_SGN-E276014+ (121836 121664,116809 116430) ******************************************************************************** EST sequence 102 +strand 529 n (File: SGN-E321761+) 1 TGAAATCGAA TTGTAGCAGT AAGAATGCCG TTGAAGGTGT TGGACGCAAC CATAACAACT 61 TTTGATGGAG TTTTTGAAAA GTTTAAAGCA GAGTCGCCCA AAAACAAAGC CAATTTCATC 121 CTGTTCCTGG CTGATATAGA CCCTTCTACC AACCTTAGTT GGTGCCCTGA TTGTGTAAGA 181 GCTGAACCTG TGATATACAA GAAACTGGAA GCATCATATG ATGATATAGC ACTTCTGAGG 241 GCTTATGTCG GGGACAGACC TACTTGGAGG ACTCCACAGC ACCCATGGCG AGTAGATGGG 301 AGGTTCAACC TCAAAGGGGT ACCAACCTTA ATCAGATGGG AAAATGATGC AATCAAAGGT 361 CGTCTTGAAG ACCATGAAGC ACACCTTGAT CACAAAATTG GTTCCCTTCT GAATGAAGCT 421 TAAAGTGTCC CATTAACTAC TTCAAGGGGC TGCCTTATAT TATGAGAGTG CCTTAATAAA 481 ATATGCGAAA CTTCATTGGC CTGAATGAAC CTCATTTAAG AAGCCGTGA Predicted gene structure (within gDNA segment 122432 to 115840): Exon 1 121832 121664 ( 169 n); cDNA 1 169 ( 169 n); score: 1.000 Intron 1 121663 116810 (4854 n); Pd: 0.484 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 116809 116450 ( 360 n); cDNA 170 529 ( 360 n); score: 1.000 MATCH C10HBa0111D09.1- SGN-E321761+ 1.000 529 1.000 C PGS_C10HBa0111D09.1-_SGN-E321761+ (121832 121664,116809 116450) Alignment (genomic DNA sequence = upper lines): TGAAATCGAA TTGTAGCAGT AAGAATGCCG TTGAAGGTGT TGGACGCAAC CATAACAACT 121773 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAATCGAA TTGTAGCAGT AAGAATGCCG TTGAAGGTGT TGGACGCAAC CATAACAACT 60 TTTGATGGAG TTTTTGAAAA GTTTAAAGCA GAGTCGCCCA AAAACAAAGC CAATTTCATC 121713 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGATGGAG TTTTTGAAAA GTTTAAAGCA GAGTCGCCCA AAAACAAAGC CAATTTCATC 120 CTGTTCCTGG CTGATATAGA CCCTTCTACC AACCTTAGTT GGTGCCCTGG TAATTCTTAA 121653 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CTGTTCCTGG CTGATATAGA CCCTTCTACC AACCTTAGTT GGTGCCCTG. .......... 169 AACACCTAGA CAGATTTTAT TGCGTTTGCT GGTGCTCTTG ATACGAGCCA CTAAAATTTG 121593 .......... .......... .......... .......... .......... .......... 169 TTTCACATAA ATTTGATTAT GAATTCTATA TAGTATTTTT TCCAAATATG TTGTACTGTC 121533 .......... .......... .......... .......... .......... .......... 169 GAACGATTAT CATACTCTAC CATGAACTCT ACCGTCTTTC TCAGCTTGTG GTATTGTATG 121473 .......... .......... .......... .......... .......... .......... 169 TTCTAATCAT GGTTGCTGGG CCTACTGTAG AATTAGTTTG AGTTTGTCTG TACTGATTCA 121413 .......... .......... .......... .......... .......... .......... 169 TGTGGGCAGT GGCGGATCCA GAAATTTTAC ATCAGGGGTG CTCAACTACA TACATTTAAA 121353 .......... .......... .......... .......... .......... .......... 169 TGAATTACTA AATTTCGTAA ATAAATAATA ACATTGTCAC TAAAGGCAGT GGATGCTTAA 121293 .......... .......... .......... .......... .......... .......... 169 TGTACAACAT AGGTCCACCA CTGTATGCGT GTAGCTGTAA TAAACGATAA TGTAACAGCA 121233 .......... .......... .......... .......... .......... .......... 169 ACCGATTCCA GATTTGTATT GATAGAAACT GACTCAATTA CAATAGCTAA TAATCAAACT 121173 .......... .......... .......... .......... .......... .......... 169 GATACTTAAA TGACAGAATT ATGATTGAAG TAGTGAAAAT AACATAGCTA GAGATATTAG 121113 .......... .......... .......... .......... .......... .......... 169 AGAAGGAGAT GAGATACTGG AACATAGAAG AGGATGAGGG GATAGCAGAC TTTACAAAAG 121053 .......... .......... .......... .......... .......... .......... 169 TGCAATATAA TTCTCATAAA CCTATATTGC TCTCACAGTT CGCTTTTTGT CAACTCCGAT 120993 .......... .......... .......... .......... .......... .......... 169 TCCAGGCATA GCCACTTAAA TTGTTGTTGG GATGCTTTGC TAATACCGAT CAAGACCTAT 120933 .......... .......... .......... .......... .......... .......... 169 TCATAACAAT ACCTCCATCC CCAATTAGAA CTTTGTCCTC AATGTTCGGT TCGAGTCAGG 120873 .......... .......... .......... .......... .......... .......... 169 AACAGTGATG CTCAGGGGCT CCCTACTGAT TATCCCAATA CCAAGACATG CTTTATGACT 120813 .......... .......... .......... .......... .......... .......... 169 TGAAAAAAAT GTGTGCCCTA GTGCACCTGT TATGGAACAA TCAAAACCGT GGTCGTTGTG 120753 .......... .......... .......... .......... .......... .......... 169 GCCTTTAGTG AACGGTAACA GATTTGTTAA CTCAAGTGTC ATTGTAACCA GCCCTGCATA 120693 .......... .......... .......... .......... .......... .......... 169 GACATGACTT TGATTGCCCT CTTTTTGGAG CAGTTAGCAG TAAGCTAAAT GAGAAAGCCA 120633 .......... .......... .......... .......... .......... .......... 169 AGGAAAGCAT TCCTGCAGCG AGCCTCCACA AAAGCATGAA CTCAGTTAAC TGGAAACCAT 120573 .......... .......... .......... .......... .......... .......... 169 CTTTTTGTGG CACGTGAAAC TCATCCAATC ATTTGATATC TTCCCAATCA GTACAAACAA 120513 .......... .......... .......... .......... .......... .......... 169 GAAAAAGATA CGTCATCTCA TGATCAAGCT TGAACAGGAA TGAATACATT ATGGTAGTGG 120453 .......... .......... .......... .......... .......... .......... 169 GTTTCAACTT TTGAAATCAA TAAGGGTTGA CCACCATGCC ATTTGCAACC AACATGGTGC 120393 .......... .......... .......... .......... .......... .......... 169 TTCGCTTGAG GCTTTTCTTT TTTAGCATAA TACCAAATTC TACTTCCACA CACATGTCAC 120333 .......... .......... .......... .......... .......... .......... 169 AACTCTTATT TGAAGACATA GGACAAAAGC TTATCTCCTC ATTGGCAAGT ATTTTGATGC 120273 .......... .......... .......... .......... .......... .......... 169 GGCAGTTGGG AGTGTAGTGA CAATATGGGT GTCTCACTTG TTGTTCGTGG ATGACACTTT 120213 .......... .......... .......... .......... .......... .......... 169 GTTTTTTTGT GATGCTAATG GGACTCAACC ACATTATTTA TGCCAAGTCC TCGCTTGGTT 120153 .......... .......... .......... .......... .......... .......... 169 TAAGGCCAAG TCCTCACTCG GCTAGCTACT AGAGGGGTAA TTTTGACAGC GAGAAATCAT 120093 .......... .......... .......... .......... .......... .......... 169 AGAAAGCAGA AGGATGCTTG CATCAGTTGG CTTTACATGT TTAAGGTTCG CGAGGACGCG 120033 .......... .......... .......... .......... .......... .......... 169 AATCATCTTC TACTACATTG TGGGACAACT ATGAGGTTGT GGTGGGATAT GTTTAGGTTG 119973 .......... .......... .......... .......... .......... .......... 169 TTTGGCACTT CATGGGCAAT GCCAGAATTT GTGGAAGATT TGATGATAAG TTGGTAGAGC 119913 .......... .......... .......... .......... .......... .......... 169 GGGAGAAGGA GAAAAAGACA GAGGGACTGG AATGTGGTTC CACTTGCTTT AATGTGGGTA 119853 .......... .......... .......... .......... .......... .......... 169 GGTTGGAGAG TGAAACAAGA GAGCTTTTGA AGGTGTAGAA TCGAGTTTCT CTCGGTTCAG 119793 .......... .......... .......... .......... .......... .......... 169 GAGAAGTCTC CGCTCTCTTA TTTTCTTTTG GTGTAAACAG AAAGTTCCTT GTATAGTAGA 119733 .......... .......... .......... .......... .......... .......... 169 TTCTTTACCT GTTGGTATAC CCCTTGTATA TACCGTCAAT TTGGCCATGT TATGAATAAA 119673 .......... .......... .......... .......... .......... .......... 169 ACACATTTAC ATGATTAAAA AGAATGATAA ACGACTCAAA ATATTCATCA CATTATCCAA 119613 .......... .......... .......... .......... .......... .......... 169 TAGCTTAGAT ATTCCATAGT TTACAATCTG AAATAAACCA AATTGTTGTC TGGCTTCTAG 119553 .......... .......... .......... .......... .......... .......... 169 TATTTCTTGG AGGAAACCAG CAAGAATGAT GTTTGTAAAT GGTTTGTCTA GATCAAGCGC 119493 .......... .......... .......... .......... .......... .......... 169 TGGGATGTTT CTACCTATTG TTGTATCGAA CACCGTAGTA GGTACATTGT CCCTATAGGT 119433 .......... .......... .......... .......... .......... .......... 169 TACTATAGCA TCACGCCTTG AGAGTATTCA TACATTTGAA GCATTTGCAA CATCTTGAAC 119373 .......... .......... .......... .......... .......... .......... 169 TTGAAGACCC TTACAGTAAA CAATAAGCAC ATGTACGAAA GAAGATATAC TCAGCTCTAC 119313 .......... .......... .......... .......... .......... .......... 169 ACCATCAAAG GAAGTCATAG CTTCTTAAAT TGTCCTCCTC ATATTTGCTC ATAGGGCTGG 119253 .......... .......... .......... .......... .......... .......... 169 AGAACACTTT ATCCAAATCA AAATGAAACT CTGATTCTGC AATAACAAGA GGTGCTGAGA 119193 .......... .......... .......... .......... .......... .......... 169 CCTCCTTGGA TTCGCACTTA TCGTGCAAGG ACACAACCAC GTCCAAGTGC TCTGGAGCAT 119133 .......... .......... .......... .......... .......... .......... 169 CAGGGTTAGT TTCGGAGGAG GCAGACAGTG TGTTCTCTAT GTTATCGAGG TGTCTGAGTA 119073 .......... .......... .......... .......... .......... .......... 169 TATGGGCATT ATTGTCCATC CGTACCATTA GCAAATCCTG GATGTATTGA GGTGATGATG 119013 .......... .......... .......... .......... .......... .......... 169 GATAATGGTA GAAAAGTATA GATCCATGTA GTCCAAATCA ATGAAAGAAC CAACGTAACA 118953 .......... .......... .......... .......... .......... .......... 169 GACGACAATG CAGAAGCAAC CAAACTCCCG ATTTATACTG ATAGGAACTG ACTCAATTAC 118893 .......... .......... .......... .......... .......... .......... 169 AGTATCAACT AATACTTGAA TGACAGTAAT ACAATTTAAG TGTGAAAATA ATATAGCTAG 118833 .......... .......... .......... .......... .......... .......... 169 GGATACTAGA GAGGGAGATG CGATGCTAGA ACATAGAAGG GGATGAGAAG ATAACAGACT 118773 .......... .......... .......... .......... .......... .......... 169 TTGCGAAATT GCAATATAAT TTGTATAAAC CTATTTGCTC TCACAGTTTG CTATTTATCA 118713 .......... .......... .......... .......... .......... .......... 169 ACCTGGATTC TAGGCATAGC CACTTAATCA AGTGTTAGCC TACTTTGCCA ATACTGGTCC 118653 .......... .......... .......... .......... .......... .......... 169 AGGCCTATCC ATAACAGTAG CTAATATCTG TTCATGTATT TGCTTTAGGA AGAACATTTT 118593 .......... .......... .......... .......... .......... .......... 169 TTTCGTTCTG GTTTATTTGA TGTTAGATAG AGCCTTTTAA CATAAAACAC TATTAGAGAT 118533 .......... .......... .......... .......... .......... .......... 169 ATTCAGCTAG AGAGCAGTTC AAAACTTAGT AGAGACAAAA AACACTAGGT GATTCTTCCC 118473 .......... .......... .......... .......... .......... .......... 169 ATTTGTCCTA GCCTTGGTGG ACAGAGTTAT TCGGTACCTG TCGCTGGTGG GTGGTAGCAA 118413 .......... .......... .......... .......... .......... .......... 169 GGTGGGAGGT GGCACGTATC TTGTGGAATT AGTCAAGGTG TAAAGCTGGC CCTGATACCG 118353 .......... .......... .......... .......... .......... .......... 169 GGGTCATAAA AAAATATATT CGATTAGGAA GCATTCCTCT AACAAGTGCT GTTTTTGGCA 118293 .......... .......... .......... .......... .......... .......... 169 TTATTGGATC CACGAGGAGA GACATGTAGC ATACCTCTCT CTGTGTAGAC GAAGACATAT 118233 .......... .......... .......... .......... .......... .......... 169 GGTCAGCTTT TATTTCTTAC CAACTTTCGT TGAATCTTCT TCAGAACTTT TCACTGGCAC 118173 .......... .......... .......... .......... .......... .......... 169 AGTGATGTAG GGCAGACAGA GAAATGTCTC TCATTTTCTG CTGGAACTTA TGAAGTTCTC 118113 .......... .......... .......... .......... .......... .......... 169 CTTGGGATGA AGGCATCGTC AAAATATGAA TACCATTGCT CCGTCATTCC TGCATCATTC 118053 .......... .......... .......... .......... .......... .......... 169 TGTTCCTTTT CAATGAAGTG GTATACCTTA AATGTGTTTC ACTTGTATCT GCTTTTTTGG 117993 .......... .......... .......... .......... .......... .......... 169 CCTATAGGCT ACTTCATCTT GTGCCTCCGT TTTTATTTTT CTAAGAATGA ACTCTTTTTT 117933 .......... .......... .......... .......... .......... .......... 169 GAGAATGGTG GTGCCTCTAT TTTTATATCT AGGAACTCTG ACATTCTGCA GTTGTATATT 117873 .......... .......... .......... .......... .......... .......... 169 CATTAAATTA ATAAGGTATC TTTCCTCTGT ATCTGCTTAA AATGTGATGG ATGATATTAT 117813 .......... .......... .......... .......... .......... .......... 169 ATTCAACTTT CAAGCTAACC TTTTGTTCTG CAATTTCCTG TTTTTAGTAG AATAACTTAT 117753 .......... .......... .......... .......... .......... .......... 169 TGCTTCGAAG CATGACTGAT TCTTCTTATC CGCATTTGGC TGCCTGTTAT TATCTAAGAG 117693 .......... .......... .......... .......... .......... .......... 169 TCTTTAAGTT TTCTTGTTCA ATTGCAGAAT TATGGTCCTC TAGTTCATGT AACATTCTTA 117633 .......... .......... .......... .......... .......... .......... 169 CAATTCCAAT ATGTTTCTAA GATTCTGGTC ATAGTTCATA TAATATCTTT TATTCCCCTT 117573 .......... .......... .......... .......... .......... .......... 169 CCAATAGACC ATTAACAATT TGAAGAGACT CAAACACCTG GGTATTTCAG TCAAATTATA 117513 .......... .......... .......... .......... .......... .......... 169 TAAAATAAAG CAAGATCTTT TTAAAAAATC TGAACTTGGT TAATTGAGAG TTTTAATGTC 117453 .......... .......... .......... .......... .......... .......... 169 GGACTAAGGG TTGAATCAGT TTCAAGGAAT TAGTATCATT GTCAACATAA GTAGCGTGCA 117393 .......... .......... .......... .......... .......... .......... 169 TCCATCTAAG TTTACGGATG AACTTCGTGA TTCTCCTCTG AATGTCTGAA CCTAGAATTG 117333 .......... .......... .......... .......... .......... .......... 169 CCATCTACTC TGTAGTATTG ACACTATCAA TATGATATAT TGGCCTCTCC TCTAGATACA 117273 .......... .......... .......... .......... .......... .......... 169 CACTTTTTCT TTCTTAGACC TTTATCTCAT ATTTTACTTA TTTAATTATC TTAAGAAGTA 117213 .......... .......... .......... .......... .......... .......... 169 TTTTTTAATT CATTGTTTCA TTTTGAACAT GTAGCAGTTA TTAGTTAAGT AAACAGGTGC 117153 .......... .......... .......... .......... .......... .......... 169 ACAATCATGA TTGTGCTATT ATTTCTGGTT TGAGGGTTGA ATTTTATACC ATTTTAATAA 117093 .......... .......... .......... .......... .......... .......... 169 ATTGAACCTT AAACTTGGAG ATCTGAAGTT GTTCTTCTAG TTCAGTCTAG CTTAACACTT 117033 .......... .......... .......... .......... .......... .......... 169 AATCAGCCTT GCATTTGCCA GTGTTGTGGA TTTTTTTGCA TACATCGTGT TGTCTTGGGG 116973 .......... .......... .......... .......... .......... .......... 169 GAAGGGAAGG CTTTTCTGCG AATTGTTTCG AATGATATTT AGATATTGTA TTATGTTGGA 116913 .......... .......... .......... .......... .......... .......... 169 CCTGCATGCA GTTTTCACTG CAGGTGAATG AATCAAGCGA TAGTTCTATC TTTACAATTT 116853 .......... .......... .......... .......... .......... .......... 169 GTGTATGTTA TTTGATATGA CATTGTTTTT TTGTTTGTAT TAGATTGTGT AAGAGCTGAA 116793 ||||||| |||||||||| .......... .......... .......... .......... ...ATTGTGT AAGAGCTGAA 186 CCTGTGATAT ACAAGAAACT GGAAGCATCA TATGATGATA TAGCACTTCT GAGGGCTTAT 116733 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTGTGATAT ACAAGAAACT GGAAGCATCA TATGATGATA TAGCACTTCT GAGGGCTTAT 246 GTCGGGGACA GACCTACTTG GAGGACTCCA CAGCACCCAT GGCGAGTAGA TGGGAGGTTC 116673 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCGGGGACA GACCTACTTG GAGGACTCCA CAGCACCCAT GGCGAGTAGA TGGGAGGTTC 306 AACCTCAAAG GGGTACCAAC CTTAATCAGA TGGGAAAATG ATGCAATCAA AGGTCGTCTT 116613 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACCTCAAAG GGGTACCAAC CTTAATCAGA TGGGAAAATG ATGCAATCAA AGGTCGTCTT 366 GAAGACCATG AAGCACACCT TGATCACAAA ATTGGTTCCC TTCTGAATGA AGCTTAAAGT 116553 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGACCATG AAGCACACCT TGATCACAAA ATTGGTTCCC TTCTGAATGA AGCTTAAAGT 426 GTCCCATTAA CTACTTCAAG GGGCTGCCTT ATATTATGAG AGTGCCTTAA TAAAATATGC 116493 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCCCATTAA CTACTTCAAG GGGCTGCCTT ATATTATGAG AGTGCCTTAA TAAAATATGC 486 GAAACTTCAT TGGCCTGAAT GAACCTCATT TAAGAAGCCG TGA 116450 |||||||||| |||||||||| |||||||||| |||||||||| ||| GAAACTTCAT TGGCCTGAAT GAACCTCATT TAAGAAGCCG TGA 529 hqPGS_C10HBa0111D09.1-_SGN-E321761+ (121832 121664,116809 116450) ******************************************************************************** EST sequence 86 +strand 411 n (File: SGN-E335737+) 1 GAAGTAGGGT AACTGAAATC GAATTGTAGC AGTAAGAATG CCGTTGAAGG TGTTGGACGC 61 AACCATAACA ACTTTTGATG GAGTTTTTGA AAAGTTTAAA GCAGAGTCGC CCAAAAACAA 121 AGCCAATTTC ATCCTGTTCC TGGCTGATAT AGACCCTTCT ACCAACCTTA GTTGGTGCCC 181 TGATTGTGTA AGAGCTGAAC CTGTGATATA CAAGAAACTG GAAGCATCAT ATGATGATAT 241 AGCACTTCTG AGGGCTTATG TCGGGGACAG ACCTACTTGG AGGACTCCAC AGCACCCATG 301 GCGAGTAGAT GGGAGGTTCA ACCTCAAAGG GGTACCAACC TTAATCAGAT GGGAAAATGA 361 TGCAATCAAA GGTCGTCTTG AAGACCATGA AGCACACCTT GATCACAAAA T Predicted gene structure (within gDNA segment 122445 to 115971): Exon 1 121845 121664 ( 182 n); cDNA 1 182 ( 182 n); score: 1.000 Intron 1 121663 116810 (4854 n); Pd: 0.484 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 116809 116581 ( 229 n); cDNA 183 411 ( 229 n); score: 1.000 MATCH C10HBa0111D09.1- SGN-E335737+ 1.000 411 1.000 C PGS_C10HBa0111D09.1-_SGN-E335737+ (121845 121664,116809 116581) Alignment (genomic DNA sequence = upper lines): GAAGTAGGGT AACTGAAATC GAATTGTAGC AGTAAGAATG CCGTTGAAGG TGTTGGACGC 121786 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGTAGGGT AACTGAAATC GAATTGTAGC AGTAAGAATG CCGTTGAAGG TGTTGGACGC 60 AACCATAACA ACTTTTGATG GAGTTTTTGA AAAGTTTAAA GCAGAGTCGC CCAAAAACAA 121726 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACCATAACA ACTTTTGATG GAGTTTTTGA AAAGTTTAAA GCAGAGTCGC CCAAAAACAA 120 AGCCAATTTC ATCCTGTTCC TGGCTGATAT AGACCCTTCT ACCAACCTTA GTTGGTGCCC 121666 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCCAATTTC ATCCTGTTCC TGGCTGATAT AGACCCTTCT ACCAACCTTA GTTGGTGCCC 180 TGGTAATTCT TAAAACACCT AGACAGATTT TATTGCGTTT GCTGGTGCTC TTGATACGAG 121606 || TG........ .......... .......... .......... .......... .......... 182 CCACTAAAAT TTGTTTCACA TAAATTTGAT TATGAATTCT ATATAGTATT TTTTCCAAAT 121546 .......... .......... .......... .......... .......... .......... 182 ATGTTGTACT GTCGAACGAT TATCATACTC TACCATGAAC TCTACCGTCT TTCTCAGCTT 121486 .......... .......... .......... .......... .......... .......... 182 GTGGTATTGT ATGTTCTAAT CATGGTTGCT GGGCCTACTG TAGAATTAGT TTGAGTTTGT 121426 .......... .......... .......... .......... .......... .......... 182 CTGTACTGAT TCATGTGGGC AGTGGCGGAT CCAGAAATTT TACATCAGGG GTGCTCAACT 121366 .......... .......... .......... .......... .......... .......... 182 ACATACATTT AAATGAATTA CTAAATTTCG TAAATAAATA ATAACATTGT CACTAAAGGC 121306 .......... .......... .......... .......... .......... .......... 182 AGTGGATGCT TAATGTACAA CATAGGTCCA CCACTGTATG CGTGTAGCTG TAATAAACGA 121246 .......... .......... .......... .......... .......... .......... 182 TAATGTAACA GCAACCGATT CCAGATTTGT ATTGATAGAA ACTGACTCAA TTACAATAGC 121186 .......... .......... .......... .......... .......... .......... 182 TAATAATCAA ACTGATACTT AAATGACAGA ATTATGATTG AAGTAGTGAA AATAACATAG 121126 .......... .......... .......... .......... .......... .......... 182 CTAGAGATAT TAGAGAAGGA GATGAGATAC TGGAACATAG AAGAGGATGA GGGGATAGCA 121066 .......... .......... .......... .......... .......... .......... 182 GACTTTACAA AAGTGCAATA TAATTCTCAT AAACCTATAT TGCTCTCACA GTTCGCTTTT 121006 .......... .......... .......... .......... .......... .......... 182 TGTCAACTCC GATTCCAGGC ATAGCCACTT AAATTGTTGT TGGGATGCTT TGCTAATACC 120946 .......... .......... .......... .......... .......... .......... 182 GATCAAGACC TATTCATAAC AATACCTCCA TCCCCAATTA GAACTTTGTC CTCAATGTTC 120886 .......... .......... .......... .......... .......... .......... 182 GGTTCGAGTC AGGAACAGTG ATGCTCAGGG GCTCCCTACT GATTATCCCA ATACCAAGAC 120826 .......... .......... .......... .......... .......... .......... 182 ATGCTTTATG ACTTGAAAAA AATGTGTGCC CTAGTGCACC TGTTATGGAA CAATCAAAAC 120766 .......... .......... .......... .......... .......... .......... 182 CGTGGTCGTT GTGGCCTTTA GTGAACGGTA ACAGATTTGT TAACTCAAGT GTCATTGTAA 120706 .......... .......... .......... .......... .......... .......... 182 CCAGCCCTGC ATAGACATGA CTTTGATTGC CCTCTTTTTG GAGCAGTTAG CAGTAAGCTA 120646 .......... .......... .......... .......... .......... .......... 182 AATGAGAAAG CCAAGGAAAG CATTCCTGCA GCGAGCCTCC ACAAAAGCAT GAACTCAGTT 120586 .......... .......... .......... .......... .......... .......... 182 AACTGGAAAC CATCTTTTTG TGGCACGTGA AACTCATCCA ATCATTTGAT ATCTTCCCAA 120526 .......... .......... .......... .......... .......... .......... 182 TCAGTACAAA CAAGAAAAAG ATACGTCATC TCATGATCAA GCTTGAACAG GAATGAATAC 120466 .......... .......... .......... .......... .......... .......... 182 ATTATGGTAG TGGGTTTCAA CTTTTGAAAT CAATAAGGGT TGACCACCAT GCCATTTGCA 120406 .......... .......... .......... .......... .......... .......... 182 ACCAACATGG TGCTTCGCTT GAGGCTTTTC TTTTTTAGCA TAATACCAAA TTCTACTTCC 120346 .......... .......... .......... .......... .......... .......... 182 ACACACATGT CACAACTCTT ATTTGAAGAC ATAGGACAAA AGCTTATCTC CTCATTGGCA 120286 .......... .......... .......... .......... .......... .......... 182 AGTATTTTGA TGCGGCAGTT GGGAGTGTAG TGACAATATG GGTGTCTCAC TTGTTGTTCG 120226 .......... .......... .......... .......... .......... .......... 182 TGGATGACAC TTTGTTTTTT TGTGATGCTA ATGGGACTCA ACCACATTAT TTATGCCAAG 120166 .......... .......... .......... .......... .......... .......... 182 TCCTCGCTTG GTTTAAGGCC AAGTCCTCAC TCGGCTAGCT ACTAGAGGGG TAATTTTGAC 120106 .......... .......... .......... .......... .......... .......... 182 AGCGAGAAAT CATAGAAAGC AGAAGGATGC TTGCATCAGT TGGCTTTACA TGTTTAAGGT 120046 .......... .......... .......... .......... .......... .......... 182 TCGCGAGGAC GCGAATCATC TTCTACTACA TTGTGGGACA ACTATGAGGT TGTGGTGGGA 119986 .......... .......... .......... .......... .......... .......... 182 TATGTTTAGG TTGTTTGGCA CTTCATGGGC AATGCCAGAA TTTGTGGAAG ATTTGATGAT 119926 .......... .......... .......... .......... .......... .......... 182 AAGTTGGTAG AGCGGGAGAA GGAGAAAAAG ACAGAGGGAC TGGAATGTGG TTCCACTTGC 119866 .......... .......... .......... .......... .......... .......... 182 TTTAATGTGG GTAGGTTGGA GAGTGAAACA AGAGAGCTTT TGAAGGTGTA GAATCGAGTT 119806 .......... .......... .......... .......... .......... .......... 182 TCTCTCGGTT CAGGAGAAGT CTCCGCTCTC TTATTTTCTT TTGGTGTAAA CAGAAAGTTC 119746 .......... .......... .......... .......... .......... .......... 182 CTTGTATAGT AGATTCTTTA CCTGTTGGTA TACCCCTTGT ATATACCGTC AATTTGGCCA 119686 .......... .......... .......... .......... .......... .......... 182 TGTTATGAAT AAAACACATT TACATGATTA AAAAGAATGA TAAACGACTC AAAATATTCA 119626 .......... .......... .......... .......... .......... .......... 182 TCACATTATC CAATAGCTTA GATATTCCAT AGTTTACAAT CTGAAATAAA CCAAATTGTT 119566 .......... .......... .......... .......... .......... .......... 182 GTCTGGCTTC TAGTATTTCT TGGAGGAAAC CAGCAAGAAT GATGTTTGTA AATGGTTTGT 119506 .......... .......... .......... .......... .......... .......... 182 CTAGATCAAG CGCTGGGATG TTTCTACCTA TTGTTGTATC GAACACCGTA GTAGGTACAT 119446 .......... .......... .......... .......... .......... .......... 182 TGTCCCTATA GGTTACTATA GCATCACGCC TTGAGAGTAT TCATACATTT GAAGCATTTG 119386 .......... .......... .......... .......... .......... .......... 182 CAACATCTTG AACTTGAAGA CCCTTACAGT AAACAATAAG CACATGTACG AAAGAAGATA 119326 .......... .......... .......... .......... .......... .......... 182 TACTCAGCTC TACACCATCA AAGGAAGTCA TAGCTTCTTA AATTGTCCTC CTCATATTTG 119266 .......... .......... .......... .......... .......... .......... 182 CTCATAGGGC TGGAGAACAC TTTATCCAAA TCAAAATGAA ACTCTGATTC TGCAATAACA 119206 .......... .......... .......... .......... .......... .......... 182 AGAGGTGCTG AGACCTCCTT GGATTCGCAC TTATCGTGCA AGGACACAAC CACGTCCAAG 119146 .......... .......... .......... .......... .......... .......... 182 TGCTCTGGAG CATCAGGGTT AGTTTCGGAG GAGGCAGACA GTGTGTTCTC TATGTTATCG 119086 .......... .......... .......... .......... .......... .......... 182 AGGTGTCTGA GTATATGGGC ATTATTGTCC ATCCGTACCA TTAGCAAATC CTGGATGTAT 119026 .......... .......... .......... .......... .......... .......... 182 TGAGGTGATG ATGGATAATG GTAGAAAAGT ATAGATCCAT GTAGTCCAAA TCAATGAAAG 118966 .......... .......... .......... .......... .......... .......... 182 AACCAACGTA ACAGACGACA ATGCAGAAGC AACCAAACTC CCGATTTATA CTGATAGGAA 118906 .......... .......... .......... .......... .......... .......... 182 CTGACTCAAT TACAGTATCA ACTAATACTT GAATGACAGT AATACAATTT AAGTGTGAAA 118846 .......... .......... .......... .......... .......... .......... 182 ATAATATAGC TAGGGATACT AGAGAGGGAG ATGCGATGCT AGAACATAGA AGGGGATGAG 118786 .......... .......... .......... .......... .......... .......... 182 AAGATAACAG ACTTTGCGAA ATTGCAATAT AATTTGTATA AACCTATTTG CTCTCACAGT 118726 .......... .......... .......... .......... .......... .......... 182 TTGCTATTTA TCAACCTGGA TTCTAGGCAT AGCCACTTAA TCAAGTGTTA GCCTACTTTG 118666 .......... .......... .......... .......... .......... .......... 182 CCAATACTGG TCCAGGCCTA TCCATAACAG TAGCTAATAT CTGTTCATGT ATTTGCTTTA 118606 .......... .......... .......... .......... .......... .......... 182 GGAAGAACAT TTTTTTCGTT CTGGTTTATT TGATGTTAGA TAGAGCCTTT TAACATAAAA 118546 .......... .......... .......... .......... .......... .......... 182 CACTATTAGA GATATTCAGC TAGAGAGCAG TTCAAAACTT AGTAGAGACA AAAAACACTA 118486 .......... .......... .......... .......... .......... .......... 182 GGTGATTCTT CCCATTTGTC CTAGCCTTGG TGGACAGAGT TATTCGGTAC CTGTCGCTGG 118426 .......... .......... .......... .......... .......... .......... 182 TGGGTGGTAG CAAGGTGGGA GGTGGCACGT ATCTTGTGGA ATTAGTCAAG GTGTAAAGCT 118366 .......... .......... .......... .......... .......... .......... 182 GGCCCTGATA CCGGGGTCAT AAAAAAATAT ATTCGATTAG GAAGCATTCC TCTAACAAGT 118306 .......... .......... .......... .......... .......... .......... 182 GCTGTTTTTG GCATTATTGG ATCCACGAGG AGAGACATGT AGCATACCTC TCTCTGTGTA 118246 .......... .......... .......... .......... .......... .......... 182 GACGAAGACA TATGGTCAGC TTTTATTTCT TACCAACTTT CGTTGAATCT TCTTCAGAAC 118186 .......... .......... .......... .......... .......... .......... 182 TTTTCACTGG CACAGTGATG TAGGGCAGAC AGAGAAATGT CTCTCATTTT CTGCTGGAAC 118126 .......... .......... .......... .......... .......... .......... 182 TTATGAAGTT CTCCTTGGGA TGAAGGCATC GTCAAAATAT GAATACCATT GCTCCGTCAT 118066 .......... .......... .......... .......... .......... .......... 182 TCCTGCATCA TTCTGTTCCT TTTCAATGAA GTGGTATACC TTAAATGTGT TTCACTTGTA 118006 .......... .......... .......... .......... .......... .......... 182 TCTGCTTTTT TGGCCTATAG GCTACTTCAT CTTGTGCCTC CGTTTTTATT TTTCTAAGAA 117946 .......... .......... .......... .......... .......... .......... 182 TGAACTCTTT TTTGAGAATG GTGGTGCCTC TATTTTTATA TCTAGGAACT CTGACATTCT 117886 .......... .......... .......... .......... .......... .......... 182 GCAGTTGTAT ATTCATTAAA TTAATAAGGT ATCTTTCCTC TGTATCTGCT TAAAATGTGA 117826 .......... .......... .......... .......... .......... .......... 182 TGGATGATAT TATATTCAAC TTTCAAGCTA ACCTTTTGTT CTGCAATTTC CTGTTTTTAG 117766 .......... .......... .......... .......... .......... .......... 182 TAGAATAACT TATTGCTTCG AAGCATGACT GATTCTTCTT ATCCGCATTT GGCTGCCTGT 117706 .......... .......... .......... .......... .......... .......... 182 TATTATCTAA GAGTCTTTAA GTTTTCTTGT TCAATTGCAG AATTATGGTC CTCTAGTTCA 117646 .......... .......... .......... .......... .......... .......... 182 TGTAACATTC TTACAATTCC AATATGTTTC TAAGATTCTG GTCATAGTTC ATATAATATC 117586 .......... .......... .......... .......... .......... .......... 182 TTTTATTCCC CTTCCAATAG ACCATTAACA ATTTGAAGAG ACTCAAACAC CTGGGTATTT 117526 .......... .......... .......... .......... .......... .......... 182 CAGTCAAATT ATATAAAATA AAGCAAGATC TTTTTAAAAA ATCTGAACTT GGTTAATTGA 117466 .......... .......... .......... .......... .......... .......... 182 GAGTTTTAAT GTCGGACTAA GGGTTGAATC AGTTTCAAGG AATTAGTATC ATTGTCAACA 117406 .......... .......... .......... .......... .......... .......... 182 TAAGTAGCGT GCATCCATCT AAGTTTACGG ATGAACTTCG TGATTCTCCT CTGAATGTCT 117346 .......... .......... .......... .......... .......... .......... 182 GAACCTAGAA TTGCCATCTA CTCTGTAGTA TTGACACTAT CAATATGATA TATTGGCCTC 117286 .......... .......... .......... .......... .......... .......... 182 TCCTCTAGAT ACACACTTTT TCTTTCTTAG ACCTTTATCT CATATTTTAC TTATTTAATT 117226 .......... .......... .......... .......... .......... .......... 182 ATCTTAAGAA GTATTTTTTA ATTCATTGTT TCATTTTGAA CATGTAGCAG TTATTAGTTA 117166 .......... .......... .......... .......... .......... .......... 182 AGTAAACAGG TGCACAATCA TGATTGTGCT ATTATTTCTG GTTTGAGGGT TGAATTTTAT 117106 .......... .......... .......... .......... .......... .......... 182 ACCATTTTAA TAAATTGAAC CTTAAACTTG GAGATCTGAA GTTGTTCTTC TAGTTCAGTC 117046 .......... .......... .......... .......... .......... .......... 182 TAGCTTAACA CTTAATCAGC CTTGCATTTG CCAGTGTTGT GGATTTTTTT GCATACATCG 116986 .......... .......... .......... .......... .......... .......... 182 TGTTGTCTTG GGGGAAGGGA AGGCTTTTCT GCGAATTGTT TCGAATGATA TTTAGATATT 116926 .......... .......... .......... .......... .......... .......... 182 GTATTATGTT GGACCTGCAT GCAGTTTTCA CTGCAGGTGA ATGAATCAAG CGATAGTTCT 116866 .......... .......... .......... .......... .......... .......... 182 ATCTTTACAA TTTGTGTATG TTATTTGATA TGACATTGTT TTTTTGTTTG TATTAGATTG 116806 |||| .......... .......... .......... .......... .......... ......ATTG 186 TGTAAGAGCT GAACCTGTGA TATACAAGAA ACTGGAAGCA TCATATGATG ATATAGCACT 116746 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTAAGAGCT GAACCTGTGA TATACAAGAA ACTGGAAGCA TCATATGATG ATATAGCACT 246 TCTGAGGGCT TATGTCGGGG ACAGACCTAC TTGGAGGACT CCACAGCACC CATGGCGAGT 116686 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGAGGGCT TATGTCGGGG ACAGACCTAC TTGGAGGACT CCACAGCACC CATGGCGAGT 306 AGATGGGAGG TTCAACCTCA AAGGGGTACC AACCTTAATC AGATGGGAAA ATGATGCAAT 116626 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATGGGAGG TTCAACCTCA AAGGGGTACC AACCTTAATC AGATGGGAAA ATGATGCAAT 366 CAAAGGTCGT CTTGAAGACC ATGAAGCACA CCTTGATCAC AAAAT 116581 |||||||||| |||||||||| |||||||||| |||||||||| ||||| CAAAGGTCGT CTTGAAGACC ATGAAGCACA CCTTGATCAC AAAAT 411 hqPGS_C10HBa0111D09.1-_SGN-E335737+ (121845 121664,116809 116581) ******************************************************************************** EST sequence 98 +strand 647 n (File: SGN-E355123+) 1 TTGTGTAAGA GCTGAACCTG TGATATACAA GAAACTGGAA GCATCATATG ATGATATAGC 61 ACTTCTGAGG GCTTATGTCG GGGACAGACC TACTTGGAGG ACTCCACAGC ACCCATGGCG 121 AGTAGATGGG AGGTTCAACC TCAAAGGGGT ACCAACCTTA ATCAGATGGG AAAATGATGC 181 AATCAAAGGT CGTCTTGAAG ACCATGAAGC ACACCTTGAT CACAAAATTG GTTCCCTTCT 241 GAATGAAGCT TAAAGTGTCC CATTAACTAC TTCAAGGGGC TGCCTTATAT TATGAGAGTG 301 CCTTAATAAA ATATGCGAAA CTTCATTGGC CTGAATGAAC CTCATTTAAG AAGCCGTGAA 361 TATGATGACT CAGTGCTAGT GGTAGCGGGA AAAACTAGTG ATTCTTGTTT AACATGTGTT 421 GCTTCCATTT CTCCTGCCAT GCTTAGTGTA CTAAATTATA CATCAATAGC ATGTTTAATG 481 TGTTGCTAAA ATGGAAATTA TTGCATTGTG TTTGAAAAAA AAAAAAAGCT GATGAGAAAC 541 ATGTCAAGTA GTACTAATAA TCGGCCTNCA CAAGATCATC ATCAAGTAGT GGTAAACCAT 601 TAGACTCGAA CAAAAAGATA ACTGCTCGTN CATGTATTGA CTTGGAA Predicted gene structure (within gDNA segment 117408 to 114364): Exon 1 116808 116288 ( 521 n); cDNA 1 521 ( 521 n); score: 0.994 MATCH C10HBa0111D09.1- SGN-E355123+ 0.994 521 0.805 C PGS_C10HBa0111D09.1-_SGN-E355123+ (116808 116288) Alignment (genomic DNA sequence = upper lines): TTGTGTAAGA GCTGAACCTG TGATATACAA GAAACTGGAA GCATCATATG ATGATATAGC 116749 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTGTAAGA GCTGAACCTG TGATATACAA GAAACTGGAA GCATCATATG ATGATATAGC 60 ACTTCTGAGG GCTTATGTCG GGGACAGACC TACTTGGAGG ACTCCACAGC ACCCATGGCG 116689 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTCTGAGG GCTTATGTCG GGGACAGACC TACTTGGAGG ACTCCACAGC ACCCATGGCG 120 AGTAGATGGG AGGTTCAACC TCAAAGGGGT ACCAACCTTA ATCAGATGGG AAAATGATGC 116629 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTAGATGGG AGGTTCAACC TCAAAGGGGT ACCAACCTTA ATCAGATGGG AAAATGATGC 180 AATCAAAGGT CGTCTTGAAG ACCATGAAGC ACACCTTGAT CACAAAATTG GTTCCCTTCT 116569 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCAAAGGT CGTCTTGAAG ACCATGAAGC ACACCTTGAT CACAAAATTG GTTCCCTTCT 240 GAATGAAGCT TAAAGTGTCC CATTAACTAC TTCAAGGGGC TGCCTTATAT TATGAGAGTG 116509 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATGAAGCT TAAAGTGTCC CATTAACTAC TTCAAGGGGC TGCCTTATAT TATGAGAGTG 300 CCTTAATAAA ATATGCGAAA CTTCATTGGC CTGAATGAAC CTCATTTAAG AAGCCGTGAA 116449 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTAATAAA ATATGCGAAA CTTCATTGGC CTGAATGAAC CTCATTTAAG AAGCCGTGAA 360 TATGATGACT CAGTGCTAGT GGTAGCGGGA AAAACTAGTG ATTCTTGTTT AACATGTGTT 116389 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGATGACT CAGTGCTAGT GGTAGCGGGA AAAACTAGTG ATTCTTGTTT AACATGTGTT 420 GCTTCCATTT CTCCTGCCAT GCTTAGTGTA CTAAATTATA CATCAATAGC ATGTTTAATG 116329 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTCCATTT CTCCTGCCAT GCTTAGTGTA CTAAATTATA CATCAATAGC ATGTTTAATG 480 TGTTGCTAAA ATGGAAATTA TTGCATTGTG TTTGACATGA A 116288 |||||||||| |||||||||| |||||||||| ||||| | | | TGTTGCTAAA ATGGAAATTA TTGCATTGTG TTTGAAAAAA A 521 hqPGS_C10HBa0111D09.1-_SGN-E355123+ (116808 116288) ******************************************************************************** EST sequence 61 +strand 438 n (File: SGN-E295805+) 1 TGGAAGCATC ATATGATGAT ATAGCACTTC TGAGGGCTCA TGTCGGGGAC AGACCTACTT 61 GGAGGACTCC ACAGCACCCA TGGCGAGTAG ATGGGAGGTT CAACCTCAAA GGGGTACCAA 121 CCTTAATCAG ATGGGAAAAT GATGCAATCA AAGGTCGTCT TGAAGACCAT GAAGCACACC 181 TTGATCACAA AATTGGTTCC CTTCTGAATG AAGCTTAAAG TGTCCCATTA ACTACTTCAA 241 GGGGCTGCCT TATATTATGA GAGTGCCTTA ATAAAATATG CGAAACTTCA TTGGCCTGAA 301 TGAACCTCAT TTAAGAAGCC GTGAATATGA TGACTCAGTG CTAGTGGTAG CGGGAAAAAC 361 TAGTGATTCT TGCTTAACAT GTGTTGCTTC CATTTCTCCT GCCATGCTTA GTGTACTAAA 421 TTATACATCA ATAGCATG Predicted gene structure (within gDNA segment 117373 to 115726): Exon 1 116773 116336 ( 438 n); cDNA 1 438 ( 438 n); score: 0.995 MATCH C10HBa0111D09.1- SGN-E295805+ 0.995 438 1.000 C PGS_C10HBa0111D09.1-_SGN-E295805+ (116773 116336) Alignment (genomic DNA sequence = upper lines): TGGAAGCATC ATATGATGAT ATAGCACTTC TGAGGGCTTA TGTCGGGGAC AGACCTACTT 116714 |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| TGGAAGCATC ATATGATGAT ATAGCACTTC TGAGGGCTCA TGTCGGGGAC AGACCTACTT 60 GGAGGACTCC ACAGCACCCA TGGCGAGTAG ATGGGAGGTT CAACCTCAAA GGGGTACCAA 116654 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGGACTCC ACAGCACCCA TGGCGAGTAG ATGGGAGGTT CAACCTCAAA GGGGTACCAA 120 CCTTAATCAG ATGGGAAAAT GATGCAATCA AAGGTCGTCT TGAAGACCAT GAAGCACACC 116594 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTAATCAG ATGGGAAAAT GATGCAATCA AAGGTCGTCT TGAAGACCAT GAAGCACACC 180 TTGATCACAA AATTGGTTCC CTTCTGAATG AAGCTTAAAG TGTCCCATTA ACTACTTCAA 116534 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGATCACAA AATTGGTTCC CTTCTGAATG AAGCTTAAAG TGTCCCATTA ACTACTTCAA 240 GGGGCTGCCT TATATTATGA GAGTGCCTTA ATAAAATATG CGAAACTTCA TTGGCCTGAA 116474 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGGCTGCCT TATATTATGA GAGTGCCTTA ATAAAATATG CGAAACTTCA TTGGCCTGAA 300 TGAACCTCAT TTAAGAAGCC GTGAATATGA TGACTCAGTG CTAGTGGTAG CGGGAAAAAC 116414 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAACCTCAT TTAAGAAGCC GTGAATATGA TGACTCAGTG CTAGTGGTAG CGGGAAAAAC 360 TAGTGATTCT TGTTTAACAT GTGTTGCTTC CATTTCTCCT GCCATGCTTA GTGTACTAAA 116354 |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGTGATTCT TGCTTAACAT GTGTTGCTTC CATTTCTCCT GCCATGCTTA GTGTACTAAA 420 TTATACATCA ATAGCATG 116336 |||||||||| |||||||| TTATACATCA ATAGCATG 438 hqPGS_C10HBa0111D09.1-_SGN-E295805+ (116773 116336) ******************************************************************************** EST sequence 107 +strand 440 n (File: SGN-E356809+) 1 TGTAAGAGCT GAACCTGTGA TATACAAGAA ACTGGAAGCT TTTATGATGA TATAGCACTT 61 CTGAGGGCTT ATGTCGGGGA CAGACCTACT TGGAGGACTC CACAGCACCC ATGGCGAGTA 121 GATGGGAGGT TCAACCTCAA AGGGGTACCA ACCTTAATCA GATGGGAAAA TGATGCAATC 181 AAAGGTCGTC TTGAAGACCA TGAAGCACAC CTTGATCACA AAATTGGTTC CCTTCTGAAT 241 GAAGCTTAAA GTGTCCCATT AACTACTTCA AGGGGCTGCC TTATATTATG AGAGTGCCTT 301 AATAAAATAT GCGAAACTTC ATTGGCCTGA ATGAACCTCA TTTAAGAAGC CGTGAATATG 361 ATGACTCCAT GCTAGTGGTA ACAGGAAAAA CTAATGATTC TCTGATTAAC ATGTGTTGCT 421 TCACTTTCTC CTGCCATGCT Predicted gene structure (within gDNA segment 117405 to 115756): Exon 1 116805 116366 ( 440 n); cDNA 1 440 ( 440 n); score: 0.969 MATCH C10HBa0111D09.1- SGN-E356809+ 0.969 440 1.000 C PGS_C10HBa0111D09.1-_SGN-E356809+ (116805 116366) Alignment (genomic DNA sequence = upper lines): TGTAAGAGCT GAACCTGTGA TATACAAGAA ACTGGAAGCA TCATATGATG ATATAGCACT 116746 |||||||||| |||||||||| |||||||||| ||||||||| | ||||||| |||||||||| TGTAAGAGCT GAACCTGTGA TATACAAGAA ACTGGAAGC- TTTTATGATG ATATAGCACT 59 TCTGAGGGCT TATGTCGGGG ACAGACCTAC TTGGAGGACT CCACAGCACC CATGGCGAGT 116686 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGAGGGCT TATGTCGGGG ACAGACCTAC TTGGAGGACT CCACAGCACC CATGGCGAGT 119 AGATGGGAGG TTCAACCTCA AAGGGGTACC AACCTTAATC AGATGGGAAA ATGATGCAAT 116626 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATGGGAGG TTCAACCTCA AAGGGGTACC AACCTTAATC AGATGGGAAA ATGATGCAAT 179 CAAAGGTCGT CTTGAAGACC ATGAAGCACA CCTTGATCAC AAAATTGGTT CCCTTCTGAA 116566 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAGGTCGT CTTGAAGACC ATGAAGCACA CCTTGATCAC AAAATTGGTT CCCTTCTGAA 239 TGAAGCTTAA AGTGTCCCAT TAACTACTTC AAGGGGCTGC CTTATATTAT GAGAGTGCCT 116506 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGCTTAA AGTGTCCCAT TAACTACTTC AAGGGGCTGC CTTATATTAT GAGAGTGCCT 299 TAATAAAATA TGCGAAACTT CATTGGCCTG AATGAACCTC ATTTAAGAAG CCGTGAATAT 116446 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATAAAATA TGCGAAACTT CATTGGCCTG AATGAACCTC ATTTAAGAAG CCGTGAATAT 359 GATGACTCAG TGCTAGTGGT AGCGGGAAAA ACTAGTGATT CT-TGTTTAA CATGTGTTGC 116387 |||||||| |||||||||| | | |||||| |||| ||||| || || |||| |||||||||| GATGACTCCA TGCTAGTGGT AACAGGAAAA ACTAATGATT CTCTGATTAA CATGTGTTGC 419 TTCCATTTCT CCTGCCATGC T 116366 ||| ||||| |||||||||| | TTCACTTTCT CCTGCCATGC T 440 hqPGS_C10HBa0111D09.1-_SGN-E356809+ (116805 116366) ******************************************************************************** EST sequence 31 -strand 415 n (File: SGN-E221912-) 1 AAGAAACTGG AAGCATCATA TGATGATATA GCACTTCTGA GGGCTTATGT CGGGGACAGA 61 CCTACTTGGA GGACTCCACA GCACCCATGG CGAGTAGATG GGAGGTTCAA CCTCAAAGGG 121 GTACCAACCT TAATCAGATG GGAAAATGAT GCAATCAAAG GTCGTCTTGA AGACCATGAA 181 GCACACCTTG ATCACAAAAT TGGTTCCCTT CTGAATGAAG CTTAAAGTGT CCCATTAACT 241 ACTTCAAGGG GCTGCCTTAT ATTATGAGAG TGCCTTAATA AAATATGCGA AACTTCATTG 301 GCCTGAATGA ACCTCATTTA AGAAGCCGTG AATATGATGA CTCAGTGCTA GTGGTAGCGG 361 GAAAAACTAG TGATTCTTGT TTAACATGTG TTGCTTCCAA AAAAAAAAAA AAAAA Predicted gene structure (within gDNA segment 117390 to 115622): Exon 1 116780 116383 ( 398 n); cDNA 1 398 ( 398 n); score: 1.000 PPA cDNA 399 415 MATCH C10HBa0111D09.1- SGN-E221912- 1.000 398 0.959 C PGS_C10HBa0111D09.1-_SGN-E221912- (116780 116383) Alignment (genomic DNA sequence = upper lines): AAGAAACTGG AAGCATCATA TGATGATATA GCACTTCTGA GGGCTTATGT CGGGGACAGA 116721 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAAACTGG AAGCATCATA TGATGATATA GCACTTCTGA GGGCTTATGT CGGGGACAGA 60 CCTACTTGGA GGACTCCACA GCACCCATGG CGAGTAGATG GGAGGTTCAA CCTCAAAGGG 116661 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTACTTGGA GGACTCCACA GCACCCATGG CGAGTAGATG GGAGGTTCAA CCTCAAAGGG 120 GTACCAACCT TAATCAGATG GGAAAATGAT GCAATCAAAG GTCGTCTTGA AGACCATGAA 116601 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTACCAACCT TAATCAGATG GGAAAATGAT GCAATCAAAG GTCGTCTTGA AGACCATGAA 180 GCACACCTTG ATCACAAAAT TGGTTCCCTT CTGAATGAAG CTTAAAGTGT CCCATTAACT 116541 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCACACCTTG ATCACAAAAT TGGTTCCCTT CTGAATGAAG CTTAAAGTGT CCCATTAACT 240 ACTTCAAGGG GCTGCCTTAT ATTATGAGAG TGCCTTAATA AAATATGCGA AACTTCATTG 116481 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTCAAGGG GCTGCCTTAT ATTATGAGAG TGCCTTAATA AAATATGCGA AACTTCATTG 300 GCCTGAATGA ACCTCATTTA AGAAGCCGTG AATATGATGA CTCAGTGCTA GTGGTAGCGG 116421 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCTGAATGA ACCTCATTTA AGAAGCCGTG AATATGATGA CTCAGTGCTA GTGGTAGCGG 360 GAAAAACTAG TGATTCTTGT TTAACATGTG TTGCTTCC 116383 |||||||||| |||||||||| |||||||||| |||||||| GAAAAACTAG TGATTCTTGT TTAACATGTG TTGCTTCC 398 hqPGS_C10HBa0111D09.1-_SGN-E221912- (116780 116383) ******************************************************************************** EST sequence 30 -strand 336 n (File: SGN-E221509-) 1 AGCACCCATG GCGAGTAGAT GGGAGGTTCA ACCTCAAAGG GGTACCAACC TTAATCAGAT 61 GGGAAAATGA TGCAATCAAA GGTCGTCTTG AAGACCATGA AGCACACCTT GATCACAAAA 121 TTGGTTCCCT TCTGAATGAA GCTTAAAGTG TCCCATTAAC TACTTCAAGG GGCTGCCTTA 181 TATTATGAGA GTGCCTTAAT AAAATATGCG AAACTTCATT GGCCTGAATG AACCTCATTT 241 AAGAAGCCGT GAATATGATG ACTCAGTGCT AGTGGTAGCG GGAAAAACTA GTGATTCTTG 301 TTTAACATGT GTTGCTTCCA AAAAAAAAAA AAAAAA Predicted gene structure (within gDNA segment 117311 to 115622): Exon 1 116701 116383 ( 319 n); cDNA 1 319 ( 319 n); score: 1.000 PPA cDNA 320 336 MATCH C10HBa0111D09.1- SGN-E221509- 1.000 319 0.949 C PGS_C10HBa0111D09.1-_SGN-E221509- (116701 116383) Alignment (genomic DNA sequence = upper lines): AGCACCCATG GCGAGTAGAT GGGAGGTTCA ACCTCAAAGG GGTACCAACC TTAATCAGAT 116642 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCACCCATG GCGAGTAGAT GGGAGGTTCA ACCTCAAAGG GGTACCAACC TTAATCAGAT 60 GGGAAAATGA TGCAATCAAA GGTCGTCTTG AAGACCATGA AGCACACCTT GATCACAAAA 116582 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGAAAATGA TGCAATCAAA GGTCGTCTTG AAGACCATGA AGCACACCTT GATCACAAAA 120 TTGGTTCCCT TCTGAATGAA GCTTAAAGTG TCCCATTAAC TACTTCAAGG GGCTGCCTTA 116522 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGTTCCCT TCTGAATGAA GCTTAAAGTG TCCCATTAAC TACTTCAAGG GGCTGCCTTA 180 TATTATGAGA GTGCCTTAAT AAAATATGCG AAACTTCATT GGCCTGAATG AACCTCATTT 116462 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTATGAGA GTGCCTTAAT AAAATATGCG AAACTTCATT GGCCTGAATG AACCTCATTT 240 AAGAAGCCGT GAATATGATG ACTCAGTGCT AGTGGTAGCG GGAAAAACTA GTGATTCTTG 116402 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAAGCCGT GAATATGATG ACTCAGTGCT AGTGGTAGCG GGAAAAACTA GTGATTCTTG 300 TTTAACATGT GTTGCTTCC 116383 |||||||||| ||||||||| TTTAACATGT GTTGCTTCC 319 hqPGS_C10HBa0111D09.1-_SGN-E221509- (116701 116383) ******************************************************************************** EST sequence 60 +strand 285 n (File: SGN-E295804+) 1 TGAACCTGTG ATATACAAGA AACTGGAAGC ATCATATGAT GATATAGCAC TTCTGAGGGC 61 TTATGTCGGG GACAGACCTA CTTGGAGGAC TCCACAGCAC CCATGGCGAG TAGATGGGAG 121 GTTCAACCTC AAAGGGGTAC CAACCTTAAT CAGATGGGAA AATGATGCAA TCAAAGGTCG 181 TCTTGAAGAC CATGAAGCAC ACCTTGATCA CAAAATTGGT TCCCTTCTGA ATGAAGCTTA 241 AAGTGTCCCA TTAACTACTT CAAGGGGCTG CCTTATATTA TGAGA Predicted gene structure (within gDNA segment 117396 to 115902): Exon 1 116796 116512 ( 285 n); cDNA 1 285 ( 285 n); score: 1.000 MATCH C10HBa0111D09.1- SGN-E295804+ 1.000 285 1.000 C PGS_C10HBa0111D09.1-_SGN-E295804+ (116796 116512) Alignment (genomic DNA sequence = upper lines): TGAACCTGTG ATATACAAGA AACTGGAAGC ATCATATGAT GATATAGCAC TTCTGAGGGC 116737 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAACCTGTG ATATACAAGA AACTGGAAGC ATCATATGAT GATATAGCAC TTCTGAGGGC 60 TTATGTCGGG GACAGACCTA CTTGGAGGAC TCCACAGCAC CCATGGCGAG TAGATGGGAG 116677 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATGTCGGG GACAGACCTA CTTGGAGGAC TCCACAGCAC CCATGGCGAG TAGATGGGAG 120 GTTCAACCTC AAAGGGGTAC CAACCTTAAT CAGATGGGAA AATGATGCAA TCAAAGGTCG 116617 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCAACCTC AAAGGGGTAC CAACCTTAAT CAGATGGGAA AATGATGCAA TCAAAGGTCG 180 TCTTGAAGAC CATGAAGCAC ACCTTGATCA CAAAATTGGT TCCCTTCTGA ATGAAGCTTA 116557 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTGAAGAC CATGAAGCAC ACCTTGATCA CAAAATTGGT TCCCTTCTGA ATGAAGCTTA 240 AAGTGTCCCA TTAACTACTT CAAGGGGCTG CCTTATATTA TGAGA 116512 |||||||||| |||||||||| |||||||||| |||||||||| ||||| AAGTGTCCCA TTAACTACTT CAAGGGGCTG CCTTATATTA TGAGA 285 hqPGS_C10HBa0111D09.1-_SGN-E295804+ (116796 116512) ******************************************************************************** EST sequence 118 -strand 787 n (File: SGN-E369291-) 1 TTTTTTTTTT TTTTTTTTTT TTTTAAAATT CAAAAAGTTT GGTTGATTAA TCACCAATAA 61 TCACTGCAAA GAATCTTAAA GTAATCAACA ATCTCACAAA AAGTGTAATG ATTCTCAAAA 121 GTCTAACAAT ACAGTGTCTA CTAATATGAT GTCTAACAAT ACGGAGTATA ACCTCAAAAA 181 CGAGGTTTTT CGAACTATTT ATAGAAAATA AAAACCTAAC TAAACAAGGA CTCTATTTGC 241 TGGAAATCTG CCAAAACGCG GCTGGGTCGA CAGAACTCAC GACGGATCGT CATGGTCACG 301 ATGGACCGTC ATGGACTCTG TCGTCCCATA CTTATGCAAT TTCTTTTGCT TCTCTCTTCA 361 TTACCCTCGA CGGCAGGTAT GACGGACCGT CATAGGCACA ACGGTCTATC GAGGGTCTTC 421 GTTTCAACAC ACTTGAACTC TTGGAATATG GGTACTGGGA CTACTTCTCT GAACTTCATG 481 ACGAACCTGC AGGACGGACC GTCATGAACT CCGTAGCCCC GCACTTGGTC AGACTTCCCC 541 ATCTTCTTTC AGCAGCTGCA CTACGCTGCC ACCTACAGAC CGTCACAAGC ACGACGGACC 601 GTCATAAGCT CTGTAGGTCG TCTATTCTGC ATTTCTTCAC TCAAAATCTC CGCATTCATC 661 TTTGGACAGA TTTCCTTAAA AAGTAAATCG CTTACTACTG AATGGAGATG CTTGGCGTCG 721 AAAACATTGA GAACATGACC ACCAGTATAT CTTTTTCGTG AGATAAACCT TGCACCATAC 781 GTCCATA Predicted gene structure (within gDNA segment 122445 to 130633): Exon 1 124815 124843 ( 29 n); cDNA 97 124 ( 28 n); score: 0.793 Intron 1 124844 128352 (3509 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.70) Exon 2 128353 128923 ( 571 n); cDNA 125 676 ( 552 n); score: 0.820 PPA cDNA 24 1 MATCH C10HBa0111D09.1+ SGN-E369291- 0.820 600 0.762 C PGS_C10HBa0111D09.1+_SGN-E369291- (124815 124843,128353 128923) Alignment (genomic DNA sequence = upper lines): CAACAAGTGC AATGATTAAT CAAAACCCTA TAACCTTACT CAATTAAGTA ACCCAACAAG 124874 ||| ||||| ||||||| | ||||| || CAAAAAGTGT AATGATT-CT CAAAAGTCT. .......... .......... .......... 124 AATCATGAAC AATATCCTAC TTCACATAAC ATAACATTTA AGAGTATATA TCATCTTACT 124934 .......... .......... .......... .......... .......... .......... 124 TTAACCATAT AGACCAACAC ATATATATAT AAGTGGAACT AATCATCATA TAGTATCAAC 124994 .......... .......... .......... .......... .......... .......... 124 AATGTGCAAG TTTATCATAT ATACATCATA TATCATCATA AGATATTCAT ACATAAGAAC 125054 .......... .......... .......... .......... .......... .......... 124 CACCTCCTAA GGCTTCCCTC AAGGCAAACT AGTGCAAGAC ATAGGTAGAG TCTCATGAAC 125114 .......... .......... .......... .......... .......... .......... 124 CGACATAGAC CACAAGATAT AAGTGTGGAA TCCGGTGTCA TGCCTTCTTT CTCATAGAGT 125174 .......... .......... .......... .......... .......... .......... 124 AATTCACACG TTAGGTTCAC ATTAAAGGGT TCTAGAACAA GTTCATAACC CAATCACATT 125234 .......... .......... .......... .......... .......... .......... 124 TACCCTACCA AAGAAGGTCC ACTAAGGCTA CCTCACAATG GCGACAAGAA GCTCATAATG 125294 .......... .......... .......... .......... .......... .......... 124 ACTTTCCTAA GGATTAATAT GATGTCGTTC CAGCCAATTA ACCTTAAATC CATCATTTCT 125354 .......... .......... .......... .......... .......... .......... 124 TTACTTTGAA TAATACCATA AAGACTTACA ATTTCAACAA TCTTAACCTT ACCACTAAGT 125414 .......... .......... .......... .......... .......... .......... 124 CAAGGTTTTC ACATAAGAGA CTCTCTTAAG TTCATTTAAG GTCGCATGTC ATTCACACAT 125474 .......... .......... .......... .......... .......... .......... 124 TCAAGAGTAA GAGTTATAAC ACCTTGAATG AAGACATCAC ATATTCATAA TCATACATAC 125534 .......... .......... .......... .......... .......... .......... 124 ATCAAGCAAG GGACACAAGT CAACAAAGAT AAGACACCAC ATACTTCACT TTTAACTCAT 125594 .......... .......... .......... .......... .......... .......... 124 AATGTAAGTC ATTCTAGAAG AACCTAGAAA TAGACGTAAC ATATTCAAGT CATACTATAT 125654 .......... .......... .......... .......... .......... .......... 124 ACTATCATAA CATCATCAAT GTAACCAACA TAGACTCATA TAGCCAAGTA GGATTAACTA 125714 .......... .......... .......... .......... .......... .......... 124 AGACTCAACT CCAACACTAC ACACATAATG TCAAAGGTAT CATCTAACAT GGTCTCTTAA 125774 .......... .......... .......... .......... .......... .......... 124 GACAACATGA ATAAAAGAAT ACACATATGA CTTCACATAT TGAAAGATAT AGTCATGATT 125834 .......... .......... .......... .......... .......... .......... 124 CACATAATCA AACTACACAA ATACTCATAT TACTTCAAAT AGTTGTCAAC AAGGCCAAGA 125894 .......... .......... .......... .......... .......... .......... 124 TCTTCATATT GCATAAAGTA ACGCCGACAA GGCCATATCA ACTTCAAGTA AAATACACAA 125954 .......... .......... .......... .......... .......... .......... 124 CACTGCCACC ATTAGTGGAC CATACAAATC ATAATAGAAT AGAGGTATAT ATAACATCAA 126014 .......... .......... .......... .......... .......... .......... 124 AATAAATTAA AGAGGGAATC ATACCCCCAC ATCATCCTCA ACACTTCAAA CCAAAGTCAA 126074 .......... .......... .......... .......... .......... .......... 124 CTTACTCAAT TCGATAACAC AAGACCCTTT CCCAAGGCCA TAACAAAAAA ATCAACATCA 126134 .......... .......... .......... .......... .......... .......... 124 AAGCTATAAT AGTCGATGAT CTAGGTCAAT TAAATGTAAA TTAATCAATA TATACAACCT 126194 .......... .......... .......... .......... .......... .......... 124 AGATATAAAT TTACTACAAT TATTATATCA ATGAGTAGCC CACATAAAAC TACATAAGAA 126254 .......... .......... .......... .......... .......... .......... 124 TTCAACAACA ATAGATCAAT ATCAAGTAAC CCCAAACTAA GCCAAAAACT AGGGTTGATT 126314 .......... .......... .......... .......... .......... .......... 124 CAATTCATGG TTTCATAGGT AATTTAGATT GAAATAATCA ATACAATATC AATTATATAA 126374 .......... .......... .......... .......... .......... .......... 124 TTATTCAATG TTTAGAAATC ATTTATACAA GAACCCACGG TAGAATCATG AAATTGGACA 126434 .......... .......... .......... .......... .......... .......... 124 ATTCAATTTT GAAAATTTTA GAAAACATCT TGAGAATTGG GGCTCCTTAA TTAAATGAGT 126494 .......... .......... .......... .......... .......... .......... 124 TTCAAGGATC AAAATACATA ACTCAATGAT GAAAATTCTC CTCTTTAATG AAAAATTTCA 126554 .......... .......... .......... .......... .......... .......... 124 AGTCAAAACG TTACACCAAG ATCTTCCTTG ATTTTGGAGT TCAATGGAGT CTTTGAGAGT 126614 .......... .......... .......... .......... .......... .......... 124 TCTTAAGGGA TTTTGGGGTT TTGATTTGGA AGAATGAAAT ATTTTAAGTG TTAAACACTT 126674 .......... .......... .......... .......... .......... .......... 124 ATATACATGT TTAAAATACC CAATATACCC CTTAGGAACC GGCAAAGTAT ATTTTTGGAA 126734 .......... .......... .......... .......... .......... .......... 124 GTGGGTTAAA TTTACAGATT CACCCCTATC TTCGCAGTGA AACTACACGT AGGGACAACC 126794 .......... .......... .......... .......... .......... .......... 124 ACAGATGACT TCCCCATCGA TGGGGCGTAA GCCCACTTAC GGGCCGTGCT GGCAATTGTT 126854 .......... .......... .......... .......... .......... .......... 124 GATGGGTTCA GAGGATTGGA ACAGGTATAC TTGACACCCA AGCTAAGTAT ATACCCACTC 126914 .......... .......... .......... .......... .......... .......... 124 CCTTCGCCCA TGCACCGTCA ACCAGGCCAC TGGCCACCGA TTTGAAGTAG GTGAACTGCC 126974 .......... .......... .......... .......... .......... .......... 124 TTTTGGAAGT TTTGACTACC AACTTAGGTC CTTCTTCAAG GGACCTTGGA TGGTCCTTGG 127034 .......... .......... .......... .......... .......... .......... 124 GGATGATTTC CCAGAAATTT CCAACCTAAA TACGATATCC TATGAGTTTA ACACATATCA 127094 .......... .......... .......... .......... .......... .......... 124 CATAAGTTTC GTCTAAAACG AACACATAAA ACTCGACATA ACATGCCTAG ACACACAAGG 127154 .......... .......... .......... .......... .......... .......... 124 TCACTTCAAG GCACATCTTT CAAACGTCAT TGACGTTCTT GGACGTTTAA CCTCTAAACT 127214 .......... .......... .......... .......... .......... .......... 124 CCACGAAAAT TGATACACTT CCTATACATG CTATAATAAC TCATTTAAGT ACCTTAAAAC 127274 .......... .......... .......... .......... .......... .......... 124 CTCATGAATC ACACATAAAC ACATAGAACC ACATATGAGG CACATAGGTG ACTTAGTTTT 127334 .......... .......... .......... .......... .......... .......... 124 TGAATGTCTT GGTCGTCCCT TGACGTTTGA CTTCCAATGC ACCTAATACT TCATCTACTG 127394 .......... .......... .......... .......... .......... .......... 124 ACTCTATACC ATAAATTAGA CCAATTTAGT ACCTTATACC ATTAATACTA ACATGTTGGG 127454 .......... .......... .......... .......... .......... .......... 124 TGATATTCTC AAACTTACTT CTCGAATAAG AAGTAAAGCG GTCGTGTCAA GTAAATGACC 127514 .......... .......... .......... .......... .......... .......... 124 CAACTAGTGA GGTTGGGATC GTTCCCACGA GGAAAATAGT CTAGACTTAA CTTCAACTTG 127574 .......... .......... .......... .......... .......... .......... 124 TTATTACTAT TGTTGGGTTA ATGGCTTCCT TGGAAAGTAA AAACAATAAC GGGGGGTTTC 127634 .......... .......... .......... .......... .......... .......... 124 TATTTCTAAA TGAGTGAAAA TAAATAACGA ACTTGAAAGA GACACTTAAC AACTTTTGAA 127694 .......... .......... .......... .......... .......... .......... 124 TGATGGGTTT TAATCAATTA ATCAAAGTAA CTAGGGTTTA CGTGTTCCTC ACAGGTTCAT 127754 .......... .......... .......... .......... .......... .......... 124 AACTTGATAA TTCCAACTAT AACAATTATT TTCTAGTATC TTGCATGCAA AGTGATAAGT 127814 .......... .......... .......... .......... .......... .......... 124 TATTATTTCT AAATCCTTGG TCCGGCATCT AGAAAATCTC ATTCCGTACC TTGGTCCGGC 127874 .......... .......... .......... .......... .......... .......... 124 TACGTGTGTT GCTATCCTAA CCCTTATCCT TACCTCATAT TAAGCATCGT ATTCAATATT 127934 .......... .......... .......... .......... .......... .......... 124 TGACTAAGTT ATTACCTCGT ACCAATCAAT ACTAGCCTAT TAGATAGTAT ACACTAAATC 127994 .......... .......... .......... .......... .......... .......... 124 TATGTTAATA ATTCTTTTCC TATTATCTAC CTCCTTGGTC CAGCAAGTAG CATTAAGGCG 128054 .......... .......... .......... .......... .......... .......... 124 AGTTCTAACG TCGGCCATCC ATTAAAAAGA CTTTTAAGCG AAAGAATTAT TAATACATGC 128114 .......... .......... .......... .......... .......... .......... 124 AAGACACTAA TCTAGAAATG TTATTTTAGT TAGGGTTTAT CTCATTATTT GCCTATGGTT 128174 .......... .......... .......... .......... .......... .......... 124 CCCACAACCC TAGTTATGGA GTTTAGTTAC TCATAGCCAT AAACACAATA TTCAAATATA 128234 .......... .......... .......... .......... .......... .......... 124 TTAAATACGA ATTCATGTAC TTACTTCAAT GAGAAACAAT AAAATCCACA GTTTGCTTGA 128294 .......... .......... .......... .......... .......... .......... 124 TTAATCTCCA AAAATCACTT GCAAGAATCT AAAAATCTAA CAATAATACA CAAAGTCTAA 128354 || .......... .......... .......... .......... .......... ........AA 126 TAATACGGAG TCTAACTATC TGGTGTCTAA TCTCATAGAG TCTAACCTCA AAAAAGAGAT 128414 ||||| | | |||| || || ||||||| | ||| | |||||||| |||| ||| | CAATACAGTG TCTACTAATA TGATGTCTAA CAATACGGAG TATAACCTCA AAAACGAGGT 186 TTTTCGAACT ATTTATAAAA AAAACAAAAA CCTAATTAAA AAAGGATTCT AATTGCTTGA 128474 |||||||||| |||||| | | ||| ||||| ||||| |||| ||||| ||| | ||||| || TTTTCGAACT ATTTAT-AGA -AAATAAAAA CCTAACTAAA CAAGGACTCT ATTTGCTGGA 244 AATTTGCCAA AATGCGGCTG GGTCGACGGA CCACGCGACG GAGCGTCGTA GTCACGACGG 128534 ||| |||||| || ||||||| ||||||| || | | ||||| || |||| | ||||||| || AATCTGCCAA AACGCGGCTG GGTCGACAGA ACTCACGACG GATCGTCATG GTCACGATGG 304 ACCGTCATGG ACTCCGTCGT CCCATACTTG TGCAATTTCT TCTGCTGCTA TCCTCATTCT 128594 |||||||||| |||| ||||| ||||||||| |||||||||| | |||| || || ||||| ACCGTCATGG ACTCTGTCGT CCCATACTTA TGCAATTTCT TTTGCTTCTC TCTTCATTAC 364 CCTTGACGGC AAGTATGACG GACCGTCATA GGCAAAACGG TCCGTTTAGG GTC-TCGTTC 128653 ||| |||||| | |||||||| |||||||||| |||| ||||| || | ||| ||| ||||| CCTCGACGGC AGGTATGACG GACCGTCATA GGCACAACGG TCTATCGAGG GTCTTCGTTT 424 CAAAGTACTT CAACTCTTGA AATCTGGGTA CT-GGACCAC TTCTCTGTTC TTCACGACAA 128712 ||| |||| |||||||| ||| |||||| || |||| || ||||||| | |||| ||| | CAACACACTT GAACTCTTGG AATATGGGTA CTGGGACTAC TTCTCTGAAC TTCATGACGA 484 ACCTGCTGGA CGGACCGTCA TAGCCACGAC GGACCATCAC AAGCTTCGTA ATCCCACACT 128772 |||||| ||| |||||||||| | || | | | | |||| ||| |||| ACCTGCAGGA CGGACCGTCA T------GA- --A-C-T--- ---C--CGTA GCCCCGCACT 525 TGGTCAGACT TCCCCATCTT CCTTCAGCAA CTGCACTATG CTTCCACCCA CGGACCGTCA 128832 |||||||||| |||||||||| | ||||||| |||||||| | || ||||| | | |||||||| TGGTCAGACT TCCCCATCTT CTTTCAGCAG CTGCACTACG CTGCCACCTA CAGACCGTCA 585 CAAGCACGAC GGACCGTCAT AAGCTCCGTA GGTGGTCTCT TCTGCAATTC TTCGCTCAAA 128892 |||||||||| |||||||||| |||||| ||| ||| |||| | |||||| ||| ||| |||||| CAAGCACGAC GGACCGTCAT AAGCTCTGTA GGTCGTCTAT TCTGCATTTC TTCACTCAAA 645 ATCTCCGCAT TCAGCTTTGG ACAGATTTCC T 128923 |||||||||| ||| |||||| |||||||||| | ATCTCCGCAT TCATCTTTGG ACAGATTTCC T 676 hqPGS_C10HBa0111D09.1+_SGN-E369291- (124815 124843,128353 128923) ******************************************************************************** EST sequence 19 +strand 695 n (File: SGN-E241731+) 1 TCAGAGTTAT TTTCAATTTG TTATTACTAT TAGTTAGTCA ATTATTTCTT TAGAAAACAA 61 AGACAATAAA AAGGGGGGTT TTAGTTCTAA ATGAATGGAA ATAGCTAGCT AAATTTAAGT 121 AGGCAACTAA CAAATTCAAA TGTTGGAATT TAATCAAATA ATATAATTAA CTAGGGTTTA 181 AGTGTTCTCC ACAAGTTCCT AATTTAATAA TTCTAACTAT AACAATTCTT TCCTAGTATC 241 TTGCATACAA AGTAATAAGT TATGTATTTC TATATCCTTG GTCTTGCATC TAGAAAATAT 301 CACTACGCAC CTTGGTCCGT CTACGTGTGT TGCTATATAA ACCCTTACCA TTACCTCATA 361 TTAAGCATTG TATTCGATAT TTGACTAAGT TATTACCTCG TACCAATCAA TACTAGCCTA 421 TCAAAAAGTA TACACTAAAT TTATGTTAAT AATTCTTTTG CTATTATCTA CCTTCTTGGT 481 CCGGCAAGTA GCACTAAGGC GAGTTCTAAT GTTGACCATC CGTTAAAAAG ACTTCTAAGC 541 AAAACAATTA TCAATACATG CAAGACACTA TTCTAGAATT GTTATTTTAG TTAGATTTTA 601 CCTCATTATT CACCCATGGT TCCCACAACC ATAGTTATGT AGCTTAGTTA CCCATAGTCA 661 TAATCACAAT ATTCATATAT ATCTAATAAT AGAAT Predicted gene structure (within gDNA segment 124074 to 131324): Exon 1 127557 128241 ( 685 n); cDNA 3 688 ( 686 n); score: 0.838 MATCH C10HBa0111D09.1+ SGN-E241731+ 0.838 685 0.986 C PGS_C10HBa0111D09.1+_SGN-E241731+ (127557 128241) Alignment (genomic DNA sequence = upper lines): AGACTTAACT TCAACTTGTT ATTACTATTG TTGGGTTAAT GGCTTCCTTG GAAAGTAAAA 127616 ||| ||| | |||| ||||| ||||||||| | || ||| ||| || |||| ||| AGAGTTATTT TCAATTTGTT ATTACTATTA GTTAGTCAAT TATTTCTTTA GAAAACAAAG 62 ACAAT-AACG GGGGGTTTCT ATTTCTAAAT GAGTGAAAAT AAATAACGAA CTTGAAAGAG 127675 ||||| || ||||| || | | |||||||| || || |||| | || | || || || || ACAATAAAAA GGGGGGTTTT AGTTCTAAAT GAATGGAAAT AGCTAGCTAA ATTTAAGTAG 122 ACACTTAACA ACTTTTGAAT GATGGGTTTT AATCAATTAA TCAAAGTAAC TAGGGTTTAC 127735 || ||||| | || ||| | ||| ||| |||||| ||| | || |||| ||||||||| GCAACTAACA A-ATTCAAAT GTTGGAATTT AATCAAATAA TATAATTAAC TAGGGTTTAA 181 GTGTTCCTCA CAGGTTCATA ACTTGATAAT TCCAACTATA ACAATTATTT TCTAGTATCT 127795 |||||| || || |||| || | || ||||| || ||||||| |||||| ||| ||||||||| GTGTTCTCCA CAAGTTCCTA ATTTAATAAT TCTAACTATA ACAATTCTTT CCTAGTATCT 241 TGCATGCAAA GTGATAAGTT AT-TATTTCT AAATCCTTGG TCCGGCATCT AGAAAATCTC 127854 ||||| |||| || ||||||| || ||||||| | |||||||| || |||||| ||||||| || TGCATACAAA GTAATAAGTT ATGTATTTCT ATATCCTTGG TCTTGCATCT AGAAAATATC 301 ATTCCGTACC TTGGTCCGGC TACGTGTGTT GCTATCCTAA CCCTTATCCT TACCTCATAT 127914 | | || ||| |||||||| | |||||||||| ||||| || |||||| | | |||||||||| ACTACGCACC TTGGTCCGTC TACGTGTGTT GCTATATAAA CCCTTACCAT TACCTCATAT 361 TAAGCATCGT ATTCAATATT TGACTAAGTT ATTACCTCGT ACCAATCAAT ACTAGCCTAT 127974 ||||||| || |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAGCATTGT ATTCGATATT TGACTAAGTT ATTACCTCGT ACCAATCAAT ACTAGCCTAT 421 TAGATAGTAT ACACTAAATC TATGTTAATA ATTCTTTTCC TATTATCTAC CTCCTTGGTC 128034 | | ||||| ||||||||| |||||||||| |||||||| | |||||||||| || ||||||| CAAAAAGTAT ACACTAAATT TATGTTAATA ATTCTTTTGC TATTATCTAC CTTCTTGGTC 481 CAGCAAGTAG CATTAAGGCG AGTTCTAACG TCGGCCATCC ATTAAAAAGA CTTTTAAGCG 128094 | |||||||| || ||||||| |||||||| | | | |||||| ||||||||| ||| ||||| CGGCAAGTAG CACTAAGGCG AGTTCTAATG TTGACCATCC GTTAAAAAGA CTTCTAAGCA 541 AAAGAATTAT TAATACATGC AAGACACTAA TCTAGAAATG TTATTTTAGT TAGGGTTTAT 128154 ||| |||||| ||||||||| ||||||||| ||||||| || |||||||||| ||| |||| AAACAATTAT CAATACATGC AAGACACTAT TCTAGAATTG TTATTTTAGT TAGATTTTAC 601 CTCATTATTT GCCTATGGTT CCCACAACCC TAGTTATGGA GTTTAGTTAC TCATAGCCAT 128214 ||||||||| || |||||| ||||||||| |||||||| | | |||||||| ||||| ||| CTCATTATTC ACCCATGGTT CCCACAACCA TAGTTATGTA GCTTAGTTAC CCATAGTCAT 661 AAACACAATA TTCAAATATA TTAAATA 128241 || ||||||| |||| ||||| | |||| AATCACAATA TTCATATATA TCTAATA 688 hqPGS_C10HBa0111D09.1+_SGN-E241731+ (127557 128241) ******************************************************************************** EST sequence 12 +strand 574 n (File: SGN-E550629+) 1 CTTTTGAGCC AAAGAATTAT TAATACATGC AAGACACTAT TCTAGAATTG TTATTTTAGT 61 TAGGTTTTAC CTCAATATTC TCCTATGGTT CCCACAATCC TAGTTATGGA GTTTAGTTAA 121 CCATAGTCAT AATCACAATA TTCAAATATA TCATATAAGA ATTCATGTAC TTAATTCAAA 181 GAGAAAGAGT AAAATCTGAG AGTTTTCTTG ATTTATCACA AAAAATCACC AACAATTAAT 241 GATAATCAAA AGTCTAACAA TAAAATGTTT TCTTATACGA TGTCTAACAA TACGGAGTCT 301 AACAATGATC CAGAGTCTTA CCTCAAAAAT GATGTTTTTA GAACTATTTA TAGAAAATAA 361 AAACCTAATT AAACAAGGAC TATATTTGCT GGAAATCTGC CAAAACGCGG CTGGGTCGAC 421 GGACCTCACG ACGGATCGTC GTGGTCACGA CAGACCGTCA TGGACTCCGT TGTCCCATAC 481 TTATGCAATT TCTTTTGCTG CTCTCTTCAT TACCCTCGAC GGCATGTATG ACGGACCGTC 541 GTAGGCACAA CGGTCCGTCG AGGGTCTTCG TTCC Predicted gene structure (within gDNA segment 127395 to 133075): Exon 1 128085 128654 ( 570 n); cDNA 1 574 ( 574 n); score: 0.810 MATCH C10HBa0111D09.1+ SGN-E550629+ 0.810 570 0.993 C PGS_C10HBa0111D09.1+_SGN-E550629+ (128085 128654) Alignment (genomic DNA sequence = upper lines): CTTTTAAGCG AAAGAATTAT TAATACATGC AAGACACTAA TCTAGAAATG TTATTTTAGT 128144 ||||| ||| |||||||||| |||||||||| ||||||||| ||||||| || |||||||||| CTTTTGAGCC AAAGAATTAT TAATACATGC AAGACACTAT TCTAGAATTG TTATTTTAGT 60 TAGGGTTTAT CTCATTATTT GCCTATGGTT CCCACAACCC TAGTTATGGA GTTTAGTTAC 128204 |||| |||| |||| |||| ||||||||| ||||||| || |||||||||| ||||||||| TAGGTTTTAC CTCAATATTC TCCTATGGTT CCCACAATCC TAGTTATGGA GTTTAGTTAA 120 TCATAGCCAT AAACACAATA TTCAAATATA TTAAATACGA ATTCATGTAC TTACTTCAAT 128264 ||||| ||| || ||||||| |||||||||| | | ||| || |||||||||| ||| ||||| CCATAGTCAT AATCACAATA TTCAAATATA TCATATAAGA ATTCATGTAC TTAATTCAAA 180 GAGAAACAAT AAAATC-CAC AGTTTGCTTG ATTAATCTCC AAAAATCACT TGCAAGAATC 128323 |||||| | | |||||| | ||||| |||| ||| ||| | ||||||||| ||| | GAGAAAGAGT AAAATCTGAG AGTTTTCTTG ATTTATCACA AAAAATCACC AACAATTA-A 239 TAAAAATC-T AACAATAA-T ACACAAAGTC TAATAATACG GAGTCTAACT ATCTGGTGTC 128381 | | |||| || ||| | | || || | | ||||| ||||||| || || ||| TGATAATCAA AAGTCTAACA ATAAAATGTT TTCTTATACG ATGTCTAACA ATACGGAGTC 299 TAA-TCTCAT --AGAGTCTA ACCTCAAAAA AGAGATTTTT CGAACTATTT ATAAAAAAAA 128438 ||| | || ||||||| |||||||||| || ||||| ||||||||| || | |||| TAACAATGAT CCAGAGTCTT ACCTCAAAAA TGATGTTTTT AGAACTATTT AT--AGAAAA 357 CAAAAACCTA ATTAAAAAAG GATTCTAATT GCTTGAAATT TGCCAAAATG CGGCTGGGTC 128498 ||||||||| |||||| ||| || | || || ||| ||||| |||||||| | |||||||||| TAAAAACCTA ATTAAACAAG GACTATATTT GCTGGAAATC TGCCAAAACG CGGCTGGGTC 417 GACGGACCAC GCGACGGAGC GTCGTAGTCA CGACGGACCG TCATGGACTC CGTCGTCCCA 128558 |||||||| | ||||||| | ||||| |||| |||| ||||| |||||||||| ||| |||||| GACGGACCTC ACGACGGATC GTCGTGGTCA CGACAGACCG TCATGGACTC CGTTGTCCCA 477 TACTTGTGCA ATTTCTTCTG CTGCTATCCT CATTCTCCTT GACGGCAAGT ATGACGGACC 128618 ||||| |||| ||||||| || ||||| || | |||| ||| ||||||| || |||||||||| TACTTATGCA ATTTCTTTTG CTGCTCTCTT CATTACCCTC GACGGCATGT ATGACGGACC 537 GTCATAGGCA AAACGGTCCG TTTAGGGTC- TCGTTCC 128654 ||| |||||| ||||||||| | |||||| ||||||| GTCGTAGGCA CAACGGTCCG TCGAGGGTCT TCGTTCC 574 hqPGS_C10HBa0111D09.1+_SGN-E550629+ (128085 128654) ******************************************************************************** EST sequence 13 +strand 574 n (File: SGN-E550645+) 1 CTTTTGAGCC AAAGAATTAT TAATACATGC AAGACACTAT TCTAGAATTG TTATTTTAGT 61 TAGGTTTTAC CTCAATATTC TCCTATGGTT CCCACAATCC TAGTTATGGA GTTTAGTTAA 121 CCATAGTCAT AATCACAATA TTCAAATATA TCATATAAGA ATTCATGTAC TTAATTCAAA 181 GAGAAAGAGT AAAATCTGAG AGTTTTCTTG ATTTATCACA AAAAATCACC AACAATTAAT 241 GATAATCAAA AGTCTAACAA TAAAATGTTT TCTTATACGA TGTCTAACAA TACGGAGTCT 301 AACAATGATC CAGAGTCTTA CCTCAAAAAT GATGTTTTTA GAACTATTTA TAGAAAATAA 361 AAACCTAATT AAACAAGGAC TATATTTGCT GGAAATCTGC CAAAACGCGG CTGGGTCGAC 421 GGACCTCACG ACGGATCGTC GTGGTCACGA CAGACCGTCA TGGACTCCGT TGTCCCATAC 481 TTATGCAATT TCTTTTGCTG CTCTCTTCAT TACCCTCGAC GGCATGTATG ACGGACCGTC 541 GTAGGCACAA CGGTCCGACG AGGGTCTTCG TTCC Predicted gene structure (within gDNA segment 127395 to 133075): Exon 1 128085 128654 ( 570 n); cDNA 1 574 ( 574 n); score: 0.808 MATCH C10HBa0111D09.1+ SGN-E550645+ 0.808 570 0.993 C PGS_C10HBa0111D09.1+_SGN-E550645+ (128085 128654) Alignment (genomic DNA sequence = upper lines): CTTTTAAGCG AAAGAATTAT TAATACATGC AAGACACTAA TCTAGAAATG TTATTTTAGT 128144 ||||| ||| |||||||||| |||||||||| ||||||||| ||||||| || |||||||||| CTTTTGAGCC AAAGAATTAT TAATACATGC AAGACACTAT TCTAGAATTG TTATTTTAGT 60 TAGGGTTTAT CTCATTATTT GCCTATGGTT CCCACAACCC TAGTTATGGA GTTTAGTTAC 128204 |||| |||| |||| |||| ||||||||| ||||||| || |||||||||| ||||||||| TAGGTTTTAC CTCAATATTC TCCTATGGTT CCCACAATCC TAGTTATGGA GTTTAGTTAA 120 TCATAGCCAT AAACACAATA TTCAAATATA TTAAATACGA ATTCATGTAC TTACTTCAAT 128264 ||||| ||| || ||||||| |||||||||| | | ||| || |||||||||| ||| ||||| CCATAGTCAT AATCACAATA TTCAAATATA TCATATAAGA ATTCATGTAC TTAATTCAAA 180 GAGAAACAAT AAAATC-CAC AGTTTGCTTG ATTAATCTCC AAAAATCACT TGCAAGAATC 128323 |||||| | | |||||| | ||||| |||| ||| ||| | ||||||||| ||| | GAGAAAGAGT AAAATCTGAG AGTTTTCTTG ATTTATCACA AAAAATCACC AACAATTA-A 239 TAAAAATC-T AACAATAA-T ACACAAAGTC TAATAATACG GAGTCTAACT ATCTGGTGTC 128381 | | |||| || ||| | | || || | | ||||| ||||||| || || ||| TGATAATCAA AAGTCTAACA ATAAAATGTT TTCTTATACG ATGTCTAACA ATACGGAGTC 299 TAA-TCTCAT --AGAGTCTA ACCTCAAAAA AGAGATTTTT CGAACTATTT ATAAAAAAAA 128438 ||| | || ||||||| |||||||||| || ||||| ||||||||| || | |||| TAACAATGAT CCAGAGTCTT ACCTCAAAAA TGATGTTTTT AGAACTATTT AT--AGAAAA 357 CAAAAACCTA ATTAAAAAAG GATTCTAATT GCTTGAAATT TGCCAAAATG CGGCTGGGTC 128498 ||||||||| |||||| ||| || | || || ||| ||||| |||||||| | |||||||||| TAAAAACCTA ATTAAACAAG GACTATATTT GCTGGAAATC TGCCAAAACG CGGCTGGGTC 417 GACGGACCAC GCGACGGAGC GTCGTAGTCA CGACGGACCG TCATGGACTC CGTCGTCCCA 128558 |||||||| | ||||||| | ||||| |||| |||| ||||| |||||||||| ||| |||||| GACGGACCTC ACGACGGATC GTCGTGGTCA CGACAGACCG TCATGGACTC CGTTGTCCCA 477 TACTTGTGCA ATTTCTTCTG CTGCTATCCT CATTCTCCTT GACGGCAAGT ATGACGGACC 128618 ||||| |||| ||||||| || ||||| || | |||| ||| ||||||| || |||||||||| TACTTATGCA ATTTCTTTTG CTGCTCTCTT CATTACCCTC GACGGCATGT ATGACGGACC 537 GTCATAGGCA AAACGGTCCG TTTAGGGTC- TCGTTCC 128654 ||| |||||| ||||||||| |||||| ||||||| GTCGTAGGCA CAACGGTCCG ACGAGGGTCT TCGTTCC 574 hqPGS_C10HBa0111D09.1+_SGN-E550645+ (128085 128654) ******************************************************************************** EST sequence 27 +strand 385 n (File: SGN-E273427+) 1 TTTTGAGCCA AAGAATTATT AATACATGCA AGACACTATT CTAGAATTGT TATTTTAGTT 61 AGGTTTTACC TCAATATTCT CCTATGGTTC CCACAATCCT AGTTATGGAG TTTAGTTAAC 121 CATAGTCATA ATCACAATAT TCAAATATAT CATATAAGAA TTCATGTACT TAATTCAAAG 181 AGAAAGAGTA AAATCTGAGA GTTTTCTTGA TTTATCACAA AAAATCACCA ACAATTAATG 241 ATAATCAAAA GTCTAACAAT AAAATGTTTT CTTATACGAT GTCTAACAAT ACGGAGTCTA 301 ACAATGATCC AGAGTCTTAC CTCAAAAATG ATGTTTTTAG AACTATTTAT AGAAAATAAA 361 AACCTAATTA AACAAGGACT ATATT Predicted gene structure (within gDNA segment 127405 to 131195): Exon 1 128086 128465 ( 380 n); cDNA 1 383 ( 383 n); score: 0.779 MATCH C10HBa0111D09.1+ SGN-E273427+ 0.779 380 0.987 C PGS_C10HBa0111D09.1+_SGN-E273427+ (128086 128465) Alignment (genomic DNA sequence = upper lines): TTTTAAGCGA AAGAATTATT AATACATGCA AGACACTAAT CTAGAAATGT TATTTTAGTT 128145 |||| ||| | |||||||||| |||||||||| |||||||| | |||||| ||| |||||||||| TTTTGAGCCA AAGAATTATT AATACATGCA AGACACTATT CTAGAATTGT TATTTTAGTT 60 AGGGTTTATC TCATTATTTG CCTATGGTTC CCACAACCCT AGTTATGGAG TTTAGTTACT 128205 ||| |||| | ||| |||| |||||||||| |||||| ||| |||||||||| |||||||| AGGTTTTACC TCAATATTCT CCTATGGTTC CCACAATCCT AGTTATGGAG TTTAGTTAAC 120 CATAGCCATA AACACAATAT TCAAATATAT TAAATACGAA TTCATGTACT TACTTCAATG 128265 ||||| |||| | |||||||| |||||||||| | ||| ||| |||||||||| || ||||| | CATAGTCATA ATCACAATAT TCAAATATAT CATATAAGAA TTCATGTACT TAATTCAAAG 180 AGAAACAATA AAATC-CACA GTTTGCTTGA TTAATCTCCA AAAATCACTT GCAAGAATCT 128324 ||||| | || ||||| | | |||| ||||| || ||| | | |||||||| ||| | | AGAAAGAGTA AAATCTGAGA GTTTTCTTGA TTTATCACAA AAAATCACCA ACAATTA-AT 239 AAAAATC-TA ACAATAA-TA CACAAAGTCT AATAATACGG AGTCTAACTA TCTGGTGTCT 128382 | |||| | | ||| | | || || | | ||||| ||||||| | | || |||| GATAATCAAA AGTCTAACAA TAAAATGTTT TCTTATACGA TGTCTAACAA TACGGAGTCT 299 AA-TCTCAT- -AGAGTCTAA CCTCAAAAAA GAGATTTTTC GAACTATTTA TAAAAAAAAC 128439 || | || ||||||| | ||||||||| || ||||| |||||||||| | | |||| AACAATGATC CAGAGTCTTA CCTCAAAAAT GATGTTTTTA GAACTATTTA T--AGAAAAT 357 AAAAACCTAA TTAAAAAAGG ATTCTA 128465 |||||||||| ||||| |||| | | || AAAAACCTAA TTAAACAAGG ACTATA 383 hqPGS_C10HBa0111D09.1+_SGN-E273427+ (128086 128465) ******************************************************************************** EST sequence 34 +strand 737 n (File: SGN-E369290+) 1 TTTTTTTTTT TTTTTTTTTT TTTAAAATCC AAAAGTTTGC TTGATTAATC ACCAATAATC 61 ACTTGCAAGA ATCTTAAAGT AATCAACAAT CTCACAAAAA GTGTAATGAT TCTCAAAAGT 121 CTAACAATAC AGTGTCTACT AATATGATGT CTAACAATAC GGAGTATAAC CTCAAAAACG 181 AGGTTTTTCG AACTATTTAT AGAAAATAAA AACCTAACTA AACAAGGACT CTATTTGCTG 241 GAAATCTGCC AAAACGCGGC TGGGTCGACA GAACTCACGA CGGATCGTCA TGGTCACGAT 301 GGACCGTCAT GGACTCTGTC GTCCCATACT TATGCAATTT CTTTTGCTTC TCTCTTCATT 361 ACCCTCGACG GCAGGTATGA CGGACCGTCA TAGGCACAAC GGTCTATCGA GGGTCTTCGT 421 TTCAACACAC TTGAACTCTT GGAATATGGG TACTGGGACT ACTTCTCTGA ACTTCATGAC 481 GAACCTGCAG GACGGACCGT CATGAACTCC GTAGCCCCGC ACTTGGTCAG ACTTCCCCAT 541 CTTCTTTCAG CAGCTGCACT ACGCTGCCAC CTACAGACCG TCACAAGCAC GACGGACCGT 601 CATAAGCTCT GTAGGTCGTC TATTCTGCAT TTCTTCACTC AAAATCTCCG CATTCATCTT 661 TGGACAGATT TCCTTAAAAA GTAAATCGCT TACTACTGAA TGGAGATGCT TGGCGTCGAA 721 AACATTGAGA ACATGAC Predicted gene structure (within gDNA segment 127354 to 130163): Exon 1 128325 128923 ( 599 n); cDNA 97 674 ( 578 n); score: 0.815 PPA cDNA 23 1 MATCH C10HBa0111D09.1+ SGN-E369290+ 0.815 599 0.813 C PGS_C10HBa0111D09.1+_SGN-E369290+ (128325 128923) Alignment (genomic DNA sequence = upper lines): AAAAATCTAA CAATAATACA CAAAGTCTAA TAATACGGAG TCTAACTATC TGGTGTCTAA 128384 |||| | ||| || | || ||||||||| ||||| | | |||| || || ||||||| AAAAGTGTAA TGATTCT-CA -AAAGTCTAA CAATACAGTG TCTACTAATA TGATGTCTAA 154 TCTCATAGAG TCTAACCTCA AAAAAGAGAT TTTTCGAACT ATTTATAAAA AAAACAAAAA 128444 | ||| | |||||||| |||| ||| | |||||||||| |||||| | |||| ||||| CAATACGGAG TATAACCTCA AAAACGAGGT TTTTCGAACT ATTTAT--AG AAAATAAAAA 212 CCTAATTAAA AAAGGATTCT AATTGCTTGA AATTTGCCAA AATGCGGCTG GGTCGACGGA 128504 ||||| |||| ||||| ||| | ||||| || ||| |||||| || ||||||| ||||||| || CCTAACTAAA CAAGGACTCT ATTTGCTGGA AATCTGCCAA AACGCGGCTG GGTCGACAGA 272 CCACGCGACG GAGCGTCGTA GTCACGACGG ACCGTCATGG ACTCCGTCGT CCCATACTTG 128564 | | ||||| || |||| | ||||||| || |||||||||| |||| ||||| ||||||||| ACTCACGACG GATCGTCATG GTCACGATGG ACCGTCATGG ACTCTGTCGT CCCATACTTA 332 TGCAATTTCT TCTGCTGCTA TCCTCATTCT CCTTGACGGC AAGTATGACG GACCGTCATA 128624 |||||||||| | |||| || || ||||| ||| |||||| | |||||||| |||||||||| TGCAATTTCT TTTGCTTCTC TCTTCATTAC CCTCGACGGC AGGTATGACG GACCGTCATA 392 GGCAAAACGG TCCGTTTAGG GTC-TCGTTC CAAAGTACTT CAACTCTTGA AATCTGGGTA 128683 |||| ||||| || | ||| ||| ||||| ||| |||| |||||||| ||| |||||| GGCACAACGG TCTATCGAGG GTCTTCGTTT CAACACACTT GAACTCTTGG AATATGGGTA 452 CT-GGACCAC TTCTCTGTTC TTCACGACAA ACCTGCTGGA CGGACCGTCA TAGCCACGAC 128742 || |||| || ||||||| | |||| ||| | |||||| ||| |||||||||| | || CTGGGACTAC TTCTCTGAAC TTCATGACGA ACCTGCAGGA CGGACCGTCA T------GA- 505 GGACCATCAC AAGCTTCGTA ATCCCACACT TGGTCAGACT TCCCCATCTT CCTTCAGCAA 128802 | | | | |||| ||| |||| |||||||||| |||||||||| | ||||||| --A-C-T--- ---C--CGTA GCCCCGCACT TGGTCAGACT TCCCCATCTT CTTTCAGCAG 553 CTGCACTATG CTTCCACCCA CGGACCGTCA CAAGCACGAC GGACCGTCAT AAGCTCCGTA 128862 |||||||| | || ||||| | | |||||||| |||||||||| |||||||||| |||||| ||| CTGCACTACG CTGCCACCTA CAGACCGTCA CAAGCACGAC GGACCGTCAT AAGCTCTGTA 613 GGTGGTCTCT TCTGCAATTC TTCGCTCAAA ATCTCCGCAT TCAGCTTTGG ACAGATTTCC 128922 ||| |||| | |||||| ||| ||| |||||| |||||||||| ||| |||||| |||||||||| GGTCGTCTAT TCTGCATTTC TTCACTCAAA ATCTCCGCAT TCATCTTTGG ACAGATTTCC 673 T 128923 | T 674 hqPGS_C10HBa0111D09.1+_SGN-E369290+ (128325 128923) ******************************************************************************** EST sequence 114 -strand 384 n (File: SGN-E357596-) 1 TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT TTTTTTTTTA AAATCCAAAA GTTTTCTTGA 61 TTAATCTCCA AAAATCACTT GCAAGAATCT CAAAATCCAA CACTAATACA CAAAGTCTTA 121 GAATATGATG TCTAATATAA TAGAGTCTAA CCTAACAGAG TCCAACAATC TAAGAGTCTA 181 ACAATCTCAG ACTCTAACAA TCTCAGAGTC TAACCTCAAA AACAAGGTTT TTTCGAACTA 241 TTTATAAAAA ACAAAAACCT AATTAAACAA GGATTTTAAT TGCTGGAAAT CTGCAAAATG 301 CGGTTGGGTC GACGGACCTC GCGACGGACC GTCGTGGTCA CTACGGACCG TCATGGACTC 361 CGTCGTCCTA TACTTGTGCA ATTT Predicted gene structure (within gDNA segment 127130 to 130224): Exon 1 128344 128572 ( 229 n); cDNA 155 384 ( 230 n); score: 0.825 PPA cDNA 39 1 MATCH C10HBa0111D09.1+ SGN-E357596- 0.825 229 0.596 C PGS_C10HBa0111D09.1+_SGN-E357596- (128344 128572) Alignment (genomic DNA sequence = upper lines): ACAAAGTCTA ATAATA-CGG AGTCTAACTA TCT-GGTGTC TAA-TCTCAT AGAGTCTAAC 128400 ||| |||| | | ||| | |||||||| | ||| | || ||| || |||||||||| ACAGAGTCCA ACAATCTAAG AGTCTAACAA TCTCAGACTC TAACAATCTC AGAGTCTAAC 214 CTCAAAAA-A GAGATTTTTC GAACTATTTA TAAAAAAAAC AAAAACCTAA TTAAAAAAGG 128459 |||||||| | | |||||| |||||||||| ||||||| | |||||||||| ||||| |||| CTCAAAAACA AGGTTTTTTC GAACTATTTA TAAAAAA--C AAAAACCTAA TTAAACAAGG 272 ATTCTAATTG CTTGAAATTT GCCAAAATGC GGCTGGGTCG ACGGACCACG CGACGGAGCG 128519 ||| |||||| || ||||| | | |||||||| || ||||||| ||||||| || ||||||| || ATTTTAATTG CTGGAAATCT G-CAAAATGC GGTTGGGTCG ACGGACCTCG CGACGGACCG 331 TCGTAGTCAC GACGGACCGT CATGGACTCC GTCGTCCCAT ACTTGTGCAA TTT 128572 |||| ||||| ||||||||| |||||||||| ||||||| || |||||||||| ||| TCGTGGTCAC TACGGACCGT CATGGACTCC GTCGTCCTAT ACTTGTGCAA TTT 384 hqPGS_C10HBa0111D09.1+_SGN-E357596- (128344 128572) ******************************************************************************** EST sequence 42 -strand 731 n (File: SGN-E261921-) 1 AATATCACTG CAAAAGATCT TAAAGTAATC ACCAATCTCA CAAAAAGTGT AATGATTCTC 61 AAAAGTCTAA CAATACAGTG TCTACTAATA TGATGTCTAA CAATACGGAG TATAACCTCA 121 AAAACGAGGT TTTTCGAACT ATTTATAGAA AATAAAAACC TAACTAAACA AGGACTCTAT 181 TTGCTGGAAA TCTGCCAAAA CGCGGCTGGG TCGACAGAAC TCACGACGGA TCGTCATGGT 241 CACGATGGAC CGTCATGGAC TCTGTCGTCC CATACTTATG CAATTTCTTT TGCTTCTCTC 301 TTCATTACCC TCGACGGCAG GTATGACGGA CCGTCATAGG CACAACGGTC TATCGAGGGT 361 CTTCGTTTCA ACACACTTGA ACTCTTGGAA TATGGGTACT GGGACTACTT CTCTGAACTT 421 CATGACGAAC CTGCAGGACG GACCGTCATG AACTCCGTAG CCCCGCACTT GGTCAGACTT 481 CCCCATCTTC TTTCAGCAGC TGCACTACGC TGCCACCTAC AGACCGTCAC AAGCACGACG 541 GACCGTCATA AGCTCTGTAG GTCGTCTATT CTGCATTTCT TCACTCAAAA TCTCCGCATT 601 CATCTTTGGA CAGATTTCCT TAAAAAGTAA ATCGCTTACT ACTGAATGGA GATGCTTGGC 661 GTCGAAAACA TTGAGAACAT GACCACCAGT ATATCTTTTT CGTGAGATAA ACCTTGCACC 721 ATACGTCCAT A Predicted gene structure (within gDNA segment 123005 to 130633): Exon 1 128346 128923 ( 578 n); cDNA 62 620 ( 559 n); score: 0.822 MATCH C10HBa0111D09.1+ SGN-E261921- 0.822 578 0.791 C PGS_C10HBa0111D09.1+_SGN-E261921- (128346 128923) Alignment (genomic DNA sequence = upper lines): AAAGTCTAAT AATACGGAGT CTAACTATCT GGTGTCTAAT CTCATAGAGT CTAACCTCAA 128405 ||||||||| ||||| | || ||| || | | ||||||| | |||| ||||||||| AAAGTCTAAC AATACAGTGT CTACTAATAT GATGTCTAAC AATACGGAGT ATAACCTCAA 121 AAAAGAGATT TTTCGAACTA TTTATAAAAA AAACAAAAAC CTAATTAAAA AAGGATTCTA 128465 ||| ||| || |||||||||| |||||| ||| | | ||| || |||| |||| ||||| |||| AAACGAGGTT TTTCGAACTA TTTATAGAAA ATA-AAA-AC CTAACTAAAC AAGGACTCTA 179 ATTGCTTGAA ATTTGCCAAA ATGCGGCTGG GTCGACGGAC CACGCGACGG AGCGTCGTAG 128525 ||||| ||| || ||||||| | |||||||| |||||| || | | |||||| | |||| | | TTTGCTGGAA ATCTGCCAAA ACGCGGCTGG GTCGACAGAA CTCACGACGG ATCGTCATGG 239 TCACGACGGA CCGTCATGGA CTCCGTCGTC CCATACTTGT GCAATTTCTT CTGCTGCTAT 128585 |||||| ||| |||||||||| ||| |||||| |||||||| | |||||||||| |||| || | TCACGATGGA CCGTCATGGA CTCTGTCGTC CCATACTTAT GCAATTTCTT TTGCTTCTCT 299 CCTCATTCTC CTTGACGGCA AGTATGACGG ACCGTCATAG GCAAAACGGT CCGTTTAGGG 128645 | ||||| | || ||||||| ||||||||| |||||||||| ||| |||||| | | |||| CTTCATTACC CTCGACGGCA GGTATGACGG ACCGTCATAG GCACAACGGT CTATCGAGGG 359 TC-TCGTTCC AAAGTACTTC AACTCTTGAA ATCTGGGTAC T-GGACCACT TCTCTGTTCT 128703 || ||||| | || |||| |||||||| | || ||||||| | |||| ||| |||||| || TCTTCGTTTC AACACACTTG AACTCTTGGA ATATGGGTAC TGGGACTACT TCTCTGAACT 419 TCACGACAAA CCTGCTGGAC GGACCGTCAT AGCCACGACG GACCATCACA AGCTTCGTAA 128763 ||| ||| || ||||| |||| |||||||||| || | | | | |||| TCATGACGAA CCTGCAGGAC GGACCGTCAT ------GA-- -A-C-T---- --C--CGTAG 460 TCCCACACTT GGTCAGACTT CCCCATCTTC CTTCAGCAAC TGCACTATGC TTCCACCCAC 128823 ||| ||||| |||||||||| |||||||||| ||||||| | ||||||| || | ||||| || CCCCGCACTT GGTCAGACTT CCCCATCTTC TTTCAGCAGC TGCACTACGC TGCCACCTAC 520 GGACCGTCAC AAGCACGACG GACCGTCATA AGCTCCGTAG GTGGTCTCTT CTGCAATTCT 128883 ||||||||| |||||||||| |||||||||| ||||| |||| || |||| || ||||| |||| AGACCGTCAC AAGCACGACG GACCGTCATA AGCTCTGTAG GTCGTCTATT CTGCATTTCT 580 TCGCTCAAAA TCTCCGCATT CAGCTTTGGA CAGATTTCCT 128923 || ||||||| |||||||||| || ||||||| |||||||||| TCACTCAAAA TCTCCGCATT CATCTTTGGA CAGATTTCCT 620 hqPGS_C10HBa0111D09.1+_SGN-E261921- (128346 128923) ******************************************************************************** EST sequence 119 -strand 758 n (File: SGN-E349968-) 1 AGAATTATTT TTTAGTAGGG TTTACCTCAT TATTCGCCTG TGTTCCCACA ACCNTAGTTA 61 TGGAGTTTAG TTACACATAG TCATAATCAC AATATTCAAA TATGTAATAT AAGAATTCAT 121 GCACTTACTT CAATAAGAAA GAAAATAATC AAGAAGTTCA CTTGATTAAT CAACAAAATC 181 ACCAAAAATT AATTACTAAA ATTAATTGAA GACTAAAGAT TCTCCAAGAG TGTAATAAAA 241 ATTACCAAGT CTAATCCACA AAAGAAGCTA AAATAACCAA AGTCTAACTA TAAGAGAGTC 301 TAATCACCAA AGAGTCTAAA ACTAAAAACA AGGTTTTTCA AATTATTTAT AAAAAACAAA 361 AACCTAATTA GAGAAGGACC CTCTTGGCTG GAAATCTGTC AAAATGCGGC TAGGTCGACG 421 GACCTCGCGA CGGGTCGTCA TGGTCACGAT GGGCCATAAT GGACTCCGAC ATCCCATACC 481 TATGCAAAGT CTTCTGTTGG TCTCTTTATT ATCCACGACG GCAGGTATGA CGGATCATCA 541 CAGGCACAAC GGTCCGTCGA GGGTCTTCAT TCCATAACAC TTGAATTCTT GGAATTTGGG 601 TATTGGGACT ACTTCTTTGA TCTTCATGAC GAACTAGCAG GACAGACCAC CATGGCTACG 661 ACGGTCCGTC ACACTCTCCA TAACCCCACA CTTGGTCAGA CTTCCCCATC TTCCTTCAGC 721 AGCTTCACTA CGATGCCACT TACGGACCGT CACAAGCT Predicted gene structure (within gDNA segment 126435 to 129771): Exon 1 128039 128051 ( 13 n); cDNA 262 273 ( 12 n); score: 0.692 Intron 1 128052 128354 ( 303 n); Pd: 0.716 (s: 0), Pa: 0.000 (s: 0.65) Exon 2 128355 128837 ( 483 n); cDNA 274 757 ( 484 n); score: 0.778 MATCH C10HBa0111D09.1+ SGN-E349968- 0.778 496 0.654 C PGS_C10HBa0111D09.1+_SGN-E349968- (128039 128051,128355 128837) Alignment (genomic DNA sequence = upper lines): AAGTAGCATT AAGGCGAGTT CTAACGTCGG CCATCCATTA AAAAGACTTT TAAGCGAAAG 128098 ||| ||| | || AAGAAGC-TA AAA....... .......... .......... .......... .......... 273 AATTATTAAT ACATGCAAGA CACTAATCTA GAAATGTTAT TTTAGTTAGG GTTTATCTCA 128158 .......... .......... .......... .......... .......... .......... 273 TTATTTGCCT ATGGTTCCCA CAACCCTAGT TATGGAGTTT AGTTACTCAT AGCCATAAAC 128218 .......... .......... .......... .......... .......... .......... 273 ACAATATTCA AATATATTAA ATACGAATTC ATGTACTTAC TTCAATGAGA AACAATAAAA 128278 .......... .......... .......... .......... .......... .......... 273 TCCACAGTTT GCTTGATTAA TCTCCAAAAA TCACTTGCAA GAATCTAAAA ATCTAACAAT 128338 .......... .......... .......... .......... .......... .......... 273 AATACACAAA GTCTAATAAT ACGGAGTCTA ACTATCTG-G TGTCTAATC- TCATAGAGTC 128396 ||| | |||||| ||||| | | |||||||| || |||||| .......... ......TAA- CCAAAGTCTA ACTATAAGAG AGTCTAATCA CCAAAGAGTC 316 TAACCTCAAA AAAGAGATTT TTCGAACTAT TTATAAAAAA AACAAAAACC TAATTAAAAA 128456 ||| ||| || || ||| ||| || ||| |||| |||| |||||||||| |||||| | | TAAAACTAAA AACAAGGTTT TTCAAATTAT TTAT--AAAA AACAAAAACC TAATTAGAGA 374 AGGATTCTAA TTGCTTGAAA TTTGCCAAAA TGCGGCTGGG TCGACGGACC ACGCGACGGA 128516 |||| || | ||| |||| | || ||||| ||||||| || |||||||||| |||||||| AGGACCCTCT TGGCTGGAAA TCTGTCAAAA TGCGGCTAGG TCGACGGACC TCGCGACGGG 434 GCGTCGTAGT CACGACGGAC CGTCATGGAC TCCGTCGTCC CATACTTGTG CAATTTCTTC 128576 |||| | || ||||| || | | | |||||| |||| | ||| ||||| | || ||| ||||| TCGTCATGGT CACGATGGGC CATAATGGAC TCCGACATCC CATACCTATG CAAAGTCTTC 494 TGCTGCTATC CTCATTCTCC TTGACGGCAA GTATGACGGA CCGTCATAGG CAAAACGGTC 128636 || || | || | ||| ||| ||||||| |||||||||| | ||| ||| || ||||||| TGTTGGTCTC TTTATTATCC ACGACGGCAG GTATGACGGA TCATCACAGG CACAACGGTC 554 CGTTTAGGGT C-TCGTTCCA AAGTACTTCA ACTCTTGAAA TCTGGGTACT -GGACCACTT 128694 ||| ||||| | || ||||| | |||| | | ||||| || | |||||| | |||| |||| CGTCGAGGGT CTTCATTCCA TAACACTTGA ATTCTTGGAA TTTGGGTATT GGGACTACTT 614 CTCTGTTCTT CACGACAAAC CTGCTGGACG GACCGTCATA GCCACGACGG ACCATCACAA 128754 || || |||| || ||| ||| || |||| |||| ||| || ||||||| || ||||| CTTTGATCTT CATGACGAAC TAGCAGGACA GACCACCATG GCTACGACGG TCCGTCACAC 674 GCTTCGTAAT CCCACACTTG GTCAGACTTC CCCATCTTCC TTCAGCAACT GCACTATGCT 128814 || | ||| |||||||||| |||||||||| |||||||||| ||||||| || ||||| | | TCTCCATAAC CCCACACTTG GTCAGACTTC CCCATCTTCC TTCAGCAGCT TCACTACGAT 734 TCCACCCACG GACCGTCACA AGC 128837 |||| ||| |||||||||| ||| GCCACTTACG GACCGTCACA AGC 757 hqPGS_C10HBa0111D09.1+_SGN-E349968- (128355 128837) ******************************************************************************** EST sequence 32 +strand 746 n (File: SGN-E546025+) 1 TTTTTTTTTT TTAATCAATA ATCTCACGAA AAGTCTAATG ATTATCAAGA ATTTTCCAAT 61 ACAATGTTCA CCAATACGAA GTTTTAACAA TCTAAGAGTC TAACTATCAG GTGTCTAACC 121 TCAAAAATGA GGTTTTTCGA ACTATTTATA TAAAAATAAA AACCTAATTA CACAAGAATT 181 CTAATTGGTG GAAATCTGCC AAAACGCGGC TGGGTCGACG GACCATGCGA CGGACCGTCG 241 TGGTCATGAC GGACCGTCAT GGACTCCGTC GTCCCATACT TGTGCACTTT CTTCTGCTGC 301 TCTCTTCATT CCCCTCGACG GCAAGTATGA CGGACTGTCA TAGGCACAAC GGTCTGTCAA 361 GGGTCTTCGT TTCAAAATAC TTCAACTCTC GGAATCTAGG TACTGGATTA CTTCTCTGAA 421 CTCCACGACG AACCTGCAGA ACAGACCGTC ATAGCCATGA CGGACCGTCA CAAGCTTCGT 481 AATCCCACAC TTGGTCAGAC TTCCCCATCT TCCTTCAGCA ACTTCTCTAC ACTGCCACCT 541 ACGGACCGTC ACAAGCACGA CGGACCGTCA TCAGCTCCAT AGGTGGTCTC TTCTGCATTT 601 CTTCTCTCAA AATCTCCGCA TTTGGCTTTG GACAAATTTC ATGATCACTT CAGCTCGCGG 661 CTCAATCCAC ACGTCTGGAT CTTCGGNATT TTTCTTCTTT CTTATGTGTG TTGCCTTGAA 721 TGCCTCAGCT TGAGTTACTG GTCTTC Predicted gene structure (within gDNA segment 125460 to 130753): Exon 1 128367 128921 ( 555 n); cDNA 85 640 ( 556 n); score: 0.875 PPA cDNA 12 1 MATCH C10HBa0111D09.1+ SGN-E546025+ 0.875 555 0.744 C PGS_C10HBa0111D09.1+_SGN-E546025+ (128367 128921) Alignment (genomic DNA sequence = upper lines): TAACTATCT- GGTGTCTAA- TCTCATAGAG TCTAACCTCA AAAAAGAGAT TTTTCGAACT 128424 |||| |||| | |||||| | ||| | | |||||||||| |||| ||| | |||||||||| TAACAATCTA AGAGTCTAAC TATCA-GGTG TCTAACCTCA AAAATGAGGT TTTTCGAACT 143 ATTTATAAAA AAAACAAAAA CCTAATTAAA AAAGGATTCT AATTGCTTGA AATTTGCCAA 128484 |||||| | | |||| ||||| |||||||| | ||| ||||| ||||| | || ||| |||||| ATTTAT-ATA AAAATAAAAA CCTAATTACA CAAGAATTCT AATTGGTGGA AATCTGCCAA 202 AATGCGGCTG GGTCGACGGA CCACGCGACG GAGCGTCGTA GTCACGACGG ACCGTCATGG 128544 || ||||||| |||||||||| ||| |||||| || |||||| |||| ||||| |||||||||| AACGCGGCTG GGTCGACGGA CCATGCGACG GACCGTCGTG GTCATGACGG ACCGTCATGG 262 ACTCCGTCGT CCCATACTTG TGCAATTTCT TCTGCTGCTA TCCTCATTCT CCTTGACGGC 128604 |||||||||| |||||||||| |||| ||||| ||||||||| || |||||| ||| |||||| ACTCCGTCGT CCCATACTTG TGCACTTTCT TCTGCTGCTC TCTTCATTCC CCTCGACGGC 322 AAGTATGACG GACCGTCATA GGCAAAACGG TCCGTTTAGG GTC-TCGTTC CAAAGTACTT 128663 |||||||||| ||| |||||| |||| ||||| || || ||| ||| ||||| |||| ||||| AAGTATGACG GACTGTCATA GGCACAACGG TCTGTCAAGG GTCTTCGTTT CAAAATACTT 382 CAACTCTTGA AATCTGGGTA CTGGACCACT TCTCTGTTCT TCACGACAAA CCTGCTGGAC 128723 ||||||| | ||||| |||| ||||| ||| |||||| || |||||| || ||||| | || CAACTCTCGG AATCTAGGTA CTGGATTACT TCTCTGAACT CCACGACGAA CCTGCAGAAC 442 GGACCGTCAT AGCCACGACG GACCATCACA AGCTTCGTAA TCCCACACTT GGTCAGACTT 128783 ||||||||| ||||| |||| |||| ||||| |||||||||| |||||||||| |||||||||| AGACCGTCAT AGCCATGACG GACCGTCACA AGCTTCGTAA TCCCACACTT GGTCAGACTT 502 CCCCATCTTC CTTCAGCAAC TGCACTATGC TTCCACCCAC GGACCGTCAC AAGCACGACG 128843 |||||||||| |||||||||| | | ||| | | ||||| || |||||||||| |||||||||| CCCCATCTTC CTTCAGCAAC TTCTCTACAC TGCCACCTAC GGACCGTCAC AAGCACGACG 562 GACCGTCATA AGCTCCGTAG GTGGTCTCTT CTGCAATTCT TCGCTCAAAA TCTCCGCATT 128903 ||||||||| |||||| ||| |||||||||| ||||| |||| || ||||||| |||||||||| GACCGTCATC AGCTCCATAG GTGGTCTCTT CTGCATTTCT TCTCTCAAAA TCTCCGCATT 622 CAGCTTTGGA CAGATTTC 128921 |||||||| || ||||| TGGCTTTGGA CAAATTTC 640 hqPGS_C10HBa0111D09.1+_SGN-E546025+ (128367 128921) ******************************************************************************** EST sequence 105 -strand 582 n (File: SGN-E322644-) 1 AACAAGGACT CTATTTGCTG GAAATCTGCC AAAACGCGGC TGGGTCGACA GAACTCACGA 61 CGGATCGTCA TGGTCACGAT GGACCGTCAT GGACTCTGTC GTCCCATACT TATGCAATTT 121 CTTTTGCTTC TCTCTTCATT ACCCTCGACG GCAGGTATGA CGGACCGTCA TAGGCACAAC 181 GGTCTATCGA GGGTCTTCGT TTCAACACAC TTGAACTCTT GGAATATGGG TACTGGGACT 241 ACTTCTCTGA ACTTCATGAC GAACCTGCAG GACGGACCGT CATGAACTCC GTAGCCCCGC 301 ACTTGGTCAG ACTTCCCCAT CTTCTTTCAG CAGCTGCACT ACGCTGCCAC CTACAGACCG 361 TCACAAGCAC GACGGACCGT CATAAGCTCT GTAGGTCGTC TATTCTGCAT TTCTTCACTC 421 AAAATCTCCG CATTCATCTT TGGACAGATT TCCTTAAAAA GTAAATCGCT TACTACTGAA 481 TGGAGATGCT TGGCGTCGAA AACATTGAGA ACATGACCAC CAGTATATCT TTTTCGTGAG 541 ATAAACCTTG CACCATACGT CCATACCAGA TAGCCAAAGC AT Predicted gene structure (within gDNA segment 124665 to 130803): Exon 1 128453 128923 ( 471 n); cDNA 1 454 ( 454 n); score: 0.828 MATCH C10HBa0111D09.1+ SGN-E322644- 0.828 471 0.809 C PGS_C10HBa0111D09.1+_SGN-E322644- (128453 128923) Alignment (genomic DNA sequence = upper lines): AAAAAGGATT CTAATTGCTT GAAATTTGCC AAAATGCGGC TGGGTCGACG GACCACGCGA 128512 || ||||| | ||| ||||| ||||| |||| |||| ||||| ||||||||| || | | ||| AACAAGGACT CTATTTGCTG GAAATCTGCC AAAACGCGGC TGGGTCGACA GAACTCACGA 60 CGGAGCGTCG TAGTCACGAC GGACCGTCAT GGACTCCGTC GTCCCATACT TGTGCAATTT 128572 |||| |||| | ||||||| |||||||||| |||||| ||| |||||||||| | |||||||| CGGATCGTCA TGGTCACGAT GGACCGTCAT GGACTCTGTC GTCCCATACT TATGCAATTT 120 CTTCTGCTGC TATCCTCATT CTCCTTGACG GCAAGTATGA CGGACCGTCA TAGGCAAAAC 128632 ||| |||| | | || ||||| ||| |||| ||| |||||| |||||||||| |||||| ||| CTTTTGCTTC TCTCTTCATT ACCCTCGACG GCAGGTATGA CGGACCGTCA TAGGCACAAC 180 GGTCCGTTTA GGGTC-TCGT TCCAAAGTAC TTCAACTCTT GAAATCTGGG TACT-GGACC 128690 |||| | | ||||| |||| | ||| || || ||||||| | ||| |||| |||| |||| GGTCTATCGA GGGTCTTCGT TTCAACACAC TTGAACTCTT GGAATATGGG TACTGGGACT 240 ACTTCTCTGT TCTTCACGAC AAACCTGCTG GACGGACCGT CATAGCCACG ACGGACCATC 128750 ||||||||| ||||| ||| ||||||| | |||||||||| ||| | | | | | ACTTCTCTGA ACTTCATGAC GAACCTGCAG GACGGACCGT CAT------G A---A-C-T- 288 ACAAGCTTCG TAATCCCACA CTTGGTCAGA CTTCCCCATC TTCCTTCAGC AACTGCACTA 128810 | || || ||| || |||||||||| |||||||||| ||| |||||| | |||||||| -----C--CG TAGCCCCGCA CTTGGTCAGA CTTCCCCATC TTCTTTCAGC AGCTGCACTA 341 TGCTTCCACC CACGGACCGT CACAAGCACG ACGGACCGTC ATAAGCTCCG TAGGTGGTCT 128870 ||| ||||| || |||||| |||||||||| |||||||||| |||||||| | ||||| |||| CGCTGCCACC TACAGACCGT CACAAGCACG ACGGACCGTC ATAAGCTCTG TAGGTCGTCT 401 CTTCTGCAAT TCTTCGCTCA AAATCTCCGC ATTCAGCTTT GGACAGATTT CCT 128923 ||||||| | ||||| |||| |||||||||| ||||| |||| |||||||||| ||| ATTCTGCATT TCTTCACTCA AAATCTCCGC ATTCATCTTT GGACAGATTT CCT 454 hqPGS_C10HBa0111D09.1+_SGN-E322644- (128453 128923) ******************************************************************************** EST sequence 50 -strand 680 n (File: SGN-E346859-) 1 TGCCAAAACG CGGCTGGGTC GACGGACCAC GCGACAGAAC GTCGTGGTCA TGACGGACCG 61 TCATGGGCTC CGTCGCCCCA TACTTGGGTG CAATTCTTCT GCTGCTTTCT TCATTCCCCT 121 CGACGGCAAG TGTGACGGAC CGTCACAGGC ACGACGGTCC GTCGAGGGTC TTCGTTACAA 181 AATACTTCAA CTTTTGGAAT TTGGGTACTG GGATCACTTC TCTGATCTTC GCGACGAACC 241 TGCAGGACGG ACCGTCATAT CCATGACGGA CCGTCACAAG CTTCGTAATC CCACACTTGG 301 TCAGACTTCC CCATCTTCCT TCAGCAGCTT CTCTACGCTG CCACCTACGG ACCGTCACAA 361 GCACGACGGA CCGTCATAAG CTCCGTAGGT GGTCTCTTCT GCATTTATCG CTCAAAATCT 421 CCGCATTCAG CTTTAGACAG ATTTCCTGCA AAACAAAGAA AAACTTATAT CAAAATTAGC 481 ACAAAAAGGG CTTTCGGACA CACTAAACTT AAGGAAAAAG TATTAATTAT ACCGTGAAAC 541 CACGGTATAT CAATCCCCTA GTTCTACGTG TCAGTTCGTG ATACCCGATC CCCTAATTCT 601 ACGTGTCGGT TCATGACACC CGCTCCACTA ATCTTATTCT GTCAATCGAT CAAGCCTTCT 661 TTTATACCAA GGCATATCAA Predicted gene structure (within gDNA segment 125409 to 131498): Exon 1 128479 129041 ( 563 n); cDNA 1 566 ( 566 n); score: 0.877 MATCH C10HBa0111D09.1+ SGN-E346859- 0.877 563 0.828 C PGS_C10HBa0111D09.1+_SGN-E346859- (128479 129041) Alignment (genomic DNA sequence = upper lines): TGCCAAAATG CGGCTGGGTC GACGGACCAC GCGACGGAGC GTCGTAGTCA CGACGGACCG 128538 |||||||| | |||||||||| |||||||||| ||||| || | ||||| |||| ||||||||| TGCCAAAACG CGGCTGGGTC GACGGACCAC GCGACAGAAC GTCGTGGTCA TGACGGACCG 60 TCATGGACTC CGTCGTCCCA TACTT--GTG CAATTTCTTC TGCTGCTATC CTCATTCTCC 128596 |||||| ||| ||||| |||| ||||| ||| ||||| |||| ||||||| || |||||| || TCATGGGCTC CGTCGCCCCA TACTTGGGTG CAATT-CTTC TGCTGCTTTC TTCATTCCCC 119 TTGACGGCAA GTATGACGGA CCGTCATAGG CAAAACGGTC CGTTTAGGGT C-TCGTTCCA 128655 | |||||||| || ||||||| |||||| ||| || |||||| ||| ||||| | ||||| || TCGACGGCAA GTGTGACGGA CCGTCACAGG CACGACGGTC CGTCGAGGGT CTTCGTTACA 179 AAGTACTTCA ACTCTTGAAA TCTGGGTACT -GGACCACTT CTCTGTTCTT CACGACAAAC 128714 || ||||||| ||| ||| || | |||||||| ||| ||||| ||||| |||| | |||| ||| AAATACTTCA ACTTTTGGAA TTTGGGTACT GGGATCACTT CTCTGATCTT CGCGACGAAC 239 CTGCTGGACG GACCGTCATA GCCACGACGG ACCATCACAA GCTTCGTAAT CCCACACTTG 128774 |||| ||||| |||||||||| ||| ||||| ||| |||||| |||||||||| |||||||||| CTGCAGGACG GACCGTCATA TCCATGACGG ACCGTCACAA GCTTCGTAAT CCCACACTTG 299 GTCAGACTTC CCCATCTTCC TTCAGCAACT GCACTATGCT TCCACCCACG GACCGTCACA 128834 |||||||||| |||||||||| ||||||| || | ||| ||| ||||| ||| |||||||||| GTCAGACTTC CCCATCTTCC TTCAGCAGCT TCTCTACGCT GCCACCTACG GACCGTCACA 359 AGCACGACGG ACCGTCATAA GCTCCGTAGG TGGTCTCTTC TGCAATTCTT CGCTCAAAAT 128894 |||||||||| |||||||||| |||||||||| |||||||||| ||| ||| | |||||||||| AGCACGACGG ACCGTCATAA GCTCCGTAGG TGGTCTCTTC TGC-ATTTAT CGCTCAAAAT 418 CTCCGCATTC AGCTTTGGAC AGATTTCCTG CAAAACAAAG AGAAACTTAT ATAAAAATTA 128954 |||||||||| |||||| ||| |||||||||| |||||||||| | |||||||| || ||||||| CTCCGCATTC AGCTTTAGAC AGATTTCCTG CAAAACAAAG AAAAACTTAT ATCAAAATTA 478 GCATAAAAA- GGCTTTTGGA CACACTAAAC TTAAGGAAAT TTTTTTAATA ATACCGTGAA 129013 ||| ||||| |||||| ||| |||||||||| ||||||||| | ||||| |||||||||| GCACAAAAAG GGCTTTCGGA CACACTAAAC TTAAGGAAAA AGTATTAATT ATACCGTGAA 538 ACCACGGTAT ATCAACACCC TCAACTTA 129041 |||||||||| ||||| ||| | || ACCACGGTAT ATCAATCCCC TAGTTCTA 566 hqPGS_C10HBa0111D09.1+_SGN-E346859- (128479 129041) ******************************************************************************** EST sequence 21 +strand 522 n (File: SGN-E243969+) 1 GGAAATCTGC CAAAACGCGG CTTGGTCGAC GGACCACGCG ACGGACCGTC GTGGACTCTG 61 TCGTCCCATA CTTGGTGCAA TTTCTTCTGC TGCTTTCTTC ATTCCCCTCG ACGGCAAGTG 121 TAACGGACCG TCATAGGTAC AACGGTCTGT CGAGGGTCTT CGTTTCAAAA TACTTCAACT 181 CTTGGAATCT GGGTACTGGG ATCACTTCTC TGATCTTCAC GACGAACCTG CAGGACGGAC 241 CGTCATAGCC ATGACGGACC GTCACAAGCT TCGTAATCCC ACACTTGGTC AGACTTCCCC 301 ATCTTCCTTC AGCAGCTTCT CTACGCTACC ACCTACGGAC CGTCACAAGC ACGACAGACC 361 TTCAAAAGCT CCGTAGGTGG TCTCTTCTGC ATTTTTTTGC TCAAAATCTC CGCTTTCAGC 421 TTTTGACAGA TTTCCTGCAA AACAAAGAGA AACTTATATC AAAATTAGCA CAAAAAAGGC 481 TTTCGGACAC TTTAAACTTA AGGCAAAAGT ATTAATTATA CC Predicted gene structure (within gDNA segment 125800 to 130186): Exon 1 128490 129008 ( 519 n); cDNA 1 522 ( 522 n); score: 0.843 MATCH C10HBa0111D09.1+ SGN-E243969+ 0.843 519 0.994 C PGS_C10HBa0111D09.1+_SGN-E243969+ (128490 129008) Alignment (genomic DNA sequence = upper lines): GGCTGGGTCG ACGGACCACG CGACGGAGCG TCGTAGT-CA CGACGGACCG TCATGGACTC 128548 || | | | | | || | | || || | | |||||||||| || ||||||| GGAAATCT-G CCAAAACGCG -GCTTGGTCG ACGGACCACG CGACGGACCG TCGTGGACTC 58 CGTCGTCCCA TACTT-GTGC AATTTCTTCT GCTGCTATCC TCATTCTCCT TGACGGCAAG 128607 ||||||||| ||||| |||| |||||||||| |||||| || |||||| ||| ||||||||| TGTCGTCCCA TACTTGGTGC AATTTCTTCT GCTGCTTTCT TCATTCCCCT CGACGGCAAG 118 TATGACGGAC CGTCATAGGC AAAACGGTCC GTTTAGGGTC -TCGTTCCAA AGTACTTCAA 128666 | | |||||| ||||||||| | ||||||| || |||||| ||||| ||| | |||||||| TGTAACGGAC CGTCATAGGT ACAACGGTCT GTCGAGGGTC TTCGTTTCAA AATACTTCAA 178 CTCTTGAAAT CTGGGTACT- GGACCACTTC TCTGTTCTTC ACGACAAACC TGCTGGACGG 128725 |||||| ||| ||||||||| ||| |||||| |||| ||||| ||||| |||| ||| |||||| CTCTTGGAAT CTGGGTACTG GGATCACTTC TCTGATCTTC ACGACGAACC TGCAGGACGG 238 ACCGTCATAG CCACGACGGA CCATCACAAG CTTCGTAATC CCACACTTGG TCAGACTTCC 128785 |||||||||| ||| |||||| || ||||||| |||||||||| |||||||||| |||||||||| ACCGTCATAG CCATGACGGA CCGTCACAAG CTTCGTAATC CCACACTTGG TCAGACTTCC 298 CCATCTTCCT TCAGCAACTG CACTATGCTT CCACCCACGG ACCGTCACAA GCACGACGGA 128845 |||||||||| |||||| || | ||| ||| ||||| |||| |||||||||| ||||||| || CCATCTTCCT TCAGCAGCTT CTCTACGCTA CCACCTACGG ACCGTCACAA GCACGACAGA 358 CCGTCATAAG CTCCGTAGGT GGTCTCTTCT GCAATTCTTC GCTCAAAATC TCCGCATTCA 128905 || ||| ||| |||||||||| |||||||||| ||| || || |||||||||| ||||| |||| CCTTCAAAAG CTCCGTAGGT GGTCTCTTCT GCATTTTTTT GCTCAAAATC TCCGCTTTCA 418 GCTTTGGACA GATTTCCTGC AAAACAAAGA GAAACTTATA TAAAAATTAG CA-TAAAAAG 128964 ||||| |||| |||||||||| |||||||||| |||||||||| | |||||||| || |||||| GCTTTTGACA GATTTCCTGC AAAACAAAGA GAAACTTATA TCAAAATTAG CACAAAAAAG 478 GCTTTTGGAC ACACTAAACT TAAGGAAATT TTTTTAATAA TACC 129008 ||||| |||| || |||||| ||||| || | ||||| | |||| GCTTTCGGAC ACTTTAAACT TAAGGCAAAA GTATTAATTA TACC 522 hqPGS_C10HBa0111D09.1+_SGN-E243969+ (128490 129008) ******************************************************************************** EST sequence 11 +strand 800 n (File: SGN-E540293+) 1 GTCGCGAGGT CCGTCATGGT CACGACGGAC CGTCATGGAC TCCGTCGTCC CATACTTATG 61 CAATTTCTTT TGTTGCTCTT CTTCATTACC CTCAACGGCA AGTATGGCGG ACCGTCATAG 121 GCACAACGGT CCGTCGAGGG CCTTCGTTCC AAAACACTTT AACTCTTGGA ATATGGGTAC 181 TGGGATTACT TCTCTGAACT TCATGACGAA CCTGTAGGAC GGACCGTCAT AGACACGATG 241 GACCGTCACA AGCTTCGTAA CCCCATACTT GGTCAGACTT CCCCATCTTC CTTCAGCAGC 301 TGCACTACGC TGACACCTAC GGACCGTCAC AAGCACGACG GACCGTCATA AGCTCCGTAG 361 GTGGTCTCTT CTGCATTTCT TCGCTCAAAA TCTCCGCATT CAGCTTTGGA CAGATTTCCT 421 GCAAAATAAA AAGAAACTAA TATAGAAATT AGCACAAAAA GGATTTTAGA CACACTAAAC 481 TTAAGGAAAA AGTATTAATA ATACCATGAA ACCACGGTAT ATCACTTGGC CACCACTTCC 541 TTAACCCCTC AAAACTAAGT CCCCACCACG AGCCTTTCCA CGGCCAATAA TAGCTTTCAC 601 GAGCCGTGAA ATAGCTTGTG TGGAGGGGGC TATTTTGGGC AGATTTCACC TAGCCACAGC 661 CTAGCCCACC ACGATCTGTG GTCCTCAGCA TTGTCCATTA CGGTGGTCGT GAGAAGGTGG 721 GAAATGTCTG GGGAAAATTT GGCTGCCCTA GCCCTCTTCC TTGGCTCTAG ACCTCTCACA 781 TAGACTTAGT TTAGGCTACT Predicted gene structure (within gDNA segment 127745 to 132397): Exon 1 128508 129027 ( 520 n); cDNA 3 524 ( 522 n); score: 0.880 MATCH C10HBa0111D09.1+ SGN-E540293+ 0.880 520 0.650 C PGS_C10HBa0111D09.1+_SGN-E540293+ (128508 129027) Alignment (genomic DNA sequence = upper lines): CGCGACGGAG CGTCGTAGTC ACGACGGACC GTCATGGACT CCGTCGTCCC ATACTTGTGC 128567 ||||| || |||| | ||| |||||||||| |||||||||| |||||||||| |||||| ||| CGCGA-GGTC CGTCATGGTC ACGACGGACC GTCATGGACT CCGTCGTCCC ATACTTATGC 61 AATTTCTTCT GCTGCT-ATC CTCATTCTCC TTGACGGCAA GTATGACGGA CCGTCATAGG 128626 |||||||| | | |||| || ||||| || | ||||||| ||||| |||| |||||||||| AATTTCTTTT GTTGCTCTTC TTCATTACCC TCAACGGCAA GTATGGCGGA CCGTCATAGG 121 CAAAACGGTC CGTTTAGGGT C-TCGTTCCA AAGTACTTCA ACTCTTGAAA TCTGGGTACT 128685 || ||||||| ||| |||| | |||||||| || |||| | ||||||| || | |||||||| CACAACGGTC CGTCGAGGGC CTTCGTTCCA AAACACTTTA ACTCTTGGAA TATGGGTACT 181 -GGACCACTT CTCTGTTCTT CACGACAAAC CTGCTGGACG GACCGTCATA GCCACGACGG 128744 ||| |||| ||||| ||| || ||| ||| ||| ||||| |||||||||| | ||||| || GGGATTACTT CTCTGAACTT CATGACGAAC CTGTAGGACG GACCGTCATA GACACGATGG 241 ACCATCACAA GCTTCGTAAT CCCACACTTG GTCAGACTTC CCCATCTTCC TTCAGCAACT 128804 ||| |||||| ||||||||| |||| ||||| |||||||||| |||||||||| ||||||| || ACCGTCACAA GCTTCGTAAC CCCATACTTG GTCAGACTTC CCCATCTTCC TTCAGCAGCT 301 GCACTATGCT TCCACCCACG GACCGTCACA AGCACGACGG ACCGTCATAA GCTCCGTAGG 128864 |||||| ||| |||| ||| |||||||||| |||||||||| |||||||||| |||||||||| GCACTACGCT GACACCTACG GACCGTCACA AGCACGACGG ACCGTCATAA GCTCCGTAGG 361 TGGTCTCTTC TGCAATTCTT CGCTCAAAAT CTCCGCATTC AGCTTTGGAC AGATTTCCTG 128924 |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTCTCTTC TGCATTTCTT CGCTCAAAAT CTCCGCATTC AGCTTTGGAC AGATTTCCTG 421 CAAAACAAAG AGAAACTTAT ATAAAAATTA GCATAAAAAG GCTTTTGGAC ACACTAAACT 128984 ||||| ||| ||||||| || ||| |||||| ||| |||||| | |||| ||| |||||||||| CAAAATAAAA AGAAACTAAT ATAGAAATTA GCACAAAAAG GATTTTAGAC ACACTAAACT 481 TAAGGAAATT TTTTTAATAA TACCGTGAAA CCACGGTATA TCA 129027 |||||||| | ||||||| |||| ||||| |||||||||| ||| TAAGGAAAAA GTATTAATAA TACCATGAAA CCACGGTATA TCA 524 hqPGS_C10HBa0111D09.1+_SGN-E540293+ (128508 129027) ******************************************************************************** EST sequence 17 +strand 534 n (File: SGN-E286708+) 1 TCGCGAGGTC CGTCATGGTC ACGACGGACC GTCATGGACT CCGTCGTCCC ATACTTATGC 61 AATTTCTTTT GTTGCTCTTC TTCATTACCC TCAACGGCAA GTATGGCGGA CCGTCATAGG 121 CACAACGGTC CGTCGAGGGC CTTCGTTCCA AAACACTTTA ACTCTTGGAA TATGGGTACT 181 GGGATTACTT CTCTGAACTT CATGACGAAC CTGTAGGACG GACCGTCATA GACACGATGG 241 ACCGTCACAA GCTTCGTAAC CCCATACTTG GTCAGACTTC CCCATCTTCC TTCAGCAGCT 301 GCACTACGCT GACACCTACG GACCGTCACA AGCACGACGG ACCGTCATAA GCTCCGTAGG 361 TGGTCTCTTC TGCATTTCTT CGCTCAAAAT CTCCGCATTC AGCTTTGGAC AGATTTCCTG 421 CAAAATAAAA AGAAACTAAT ATAGAAATTA GCACAAAAAG GATTTTAGAC ACACTAAACT 481 TAAGGAAAAA GTATTAATAA TACCATGAAA CCACGGTATA TCACTTGGCC ACCA Predicted gene structure (within gDNA segment 127755 to 129747): Exon 1 128508 129019 ( 512 n); cDNA 2 515 ( 514 n); score: 0.878 MATCH C10HBa0111D09.1+ SGN-E286708+ 0.878 512 0.959 C PGS_C10HBa0111D09.1+_SGN-E286708+ (128508 129019) Alignment (genomic DNA sequence = upper lines): CGCGACGGAG CGTCGTAGTC ACGACGGACC GTCATGGACT CCGTCGTCCC ATACTTGTGC 128567 ||||| || |||| | ||| |||||||||| |||||||||| |||||||||| |||||| ||| CGCGA-GGTC CGTCATGGTC ACGACGGACC GTCATGGACT CCGTCGTCCC ATACTTATGC 60 AATTTCTTCT GCTGCT-ATC CTCATTCTCC TTGACGGCAA GTATGACGGA CCGTCATAGG 128626 |||||||| | | |||| || ||||| || | ||||||| ||||| |||| |||||||||| AATTTCTTTT GTTGCTCTTC TTCATTACCC TCAACGGCAA GTATGGCGGA CCGTCATAGG 120 CAAAACGGTC CGTTTAGGGT C-TCGTTCCA AAGTACTTCA ACTCTTGAAA TCTGGGTACT 128685 || ||||||| ||| |||| | |||||||| || |||| | ||||||| || | |||||||| CACAACGGTC CGTCGAGGGC CTTCGTTCCA AAACACTTTA ACTCTTGGAA TATGGGTACT 180 -GGACCACTT CTCTGTTCTT CACGACAAAC CTGCTGGACG GACCGTCATA GCCACGACGG 128744 ||| |||| ||||| ||| || ||| ||| ||| ||||| |||||||||| | ||||| || GGGATTACTT CTCTGAACTT CATGACGAAC CTGTAGGACG GACCGTCATA GACACGATGG 240 ACCATCACAA GCTTCGTAAT CCCACACTTG GTCAGACTTC CCCATCTTCC TTCAGCAACT 128804 ||| |||||| ||||||||| |||| ||||| |||||||||| |||||||||| ||||||| || ACCGTCACAA GCTTCGTAAC CCCATACTTG GTCAGACTTC CCCATCTTCC TTCAGCAGCT 300 GCACTATGCT TCCACCCACG GACCGTCACA AGCACGACGG ACCGTCATAA GCTCCGTAGG 128864 |||||| ||| |||| ||| |||||||||| |||||||||| |||||||||| |||||||||| GCACTACGCT GACACCTACG GACCGTCACA AGCACGACGG ACCGTCATAA GCTCCGTAGG 360 TGGTCTCTTC TGCAATTCTT CGCTCAAAAT CTCCGCATTC AGCTTTGGAC AGATTTCCTG 128924 |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTCTCTTC TGCATTTCTT CGCTCAAAAT CTCCGCATTC AGCTTTGGAC AGATTTCCTG 420 CAAAACAAAG AGAAACTTAT ATAAAAATTA GCATAAAAAG GCTTTTGGAC ACACTAAACT 128984 ||||| ||| ||||||| || ||| |||||| ||| |||||| | |||| ||| |||||||||| CAAAATAAAA AGAAACTAAT ATAGAAATTA GCACAAAAAG GATTTTAGAC ACACTAAACT 480 TAAGGAAATT TTTTTAATAA TACCGTGAAA CCACG 129019 |||||||| | ||||||| |||| ||||| ||||| TAAGGAAAAA GTATTAATAA TACCATGAAA CCACG 515 hqPGS_C10HBa0111D09.1+_SGN-E286708+ (128508 129019) ******************************************************************************** EST sequence 112 -strand 498 n (File: SGN-E258752-) 1 TCATGGTCAC GATGGACCGT CATGGACTCT GTCGTCCCAT ACTTATGCAA TTTCTTTTGC 61 TTCTCTCTTC ATTACCCTCG ACGGCAGGTA TGACGGACCG TCATAGGCAC AACGGTCTAT 121 CGAGGGTCTT CGTTTCAACA CACTTGAACT CTTGGAATAT GGGTACTGGG ACTACTTCTC 181 TGAACTTCAT GACGAACCTG CAGGACGGAC CGTCATGAAC TCCGTAGCCC CGCACTTGGT 241 CAGACTTCCC CATCTTCTTT CAGCAGCTGC ACTACGCTGC CACCTACAGA CCGTCACAAG 301 CACGACGGAC CGTCATAAGC TCTGTAGGTC GTCTATTCTG CATTTCTTCA CTCAAAATCT 361 CCGCATTCAT CTTTGGACAG ATTTCCTTAA AAAGTAAATC GCTTACTACT GAATGGAGAT 421 GCTTGGCGTC GAAAACATTG AGAACATGAC CACCAGTATA TCTTTTTCGT GAGATAAACC 481 TTGCACCATA CGTCCATA Predicted gene structure (within gDNA segment 125335 to 130633): Exon 1 128520 128923 ( 404 n); cDNA 1 387 ( 387 n); score: 0.827 MATCH C10HBa0111D09.1+ SGN-E258752- 0.827 404 0.811 C PGS_C10HBa0111D09.1+_SGN-E258752- (128520 128923) Alignment (genomic DNA sequence = upper lines): TCGTAGTCAC GACGGACCGT CATGGACTCC GTCGTCCCAT ACTTGTGCAA TTTCTTCTGC 128579 || | ||||| || ||||||| ||||||||| |||||||||| |||| ||||| |||||| ||| TCATGGTCAC GATGGACCGT CATGGACTCT GTCGTCCCAT ACTTATGCAA TTTCTTTTGC 60 TGCTATCCTC ATTCTCCTTG ACGGCAAGTA TGACGGACCG TCATAGGCAA AACGGTCCGT 128639 | || || || ||| ||| | |||||| ||| |||||||||| ||||||||| ||||||| | TTCTCTCTTC ATTACCCTCG ACGGCAGGTA TGACGGACCG TCATAGGCAC AACGGTCTAT 120 TTAGGGTC-T CGTTCCAAAG TACTTCAACT CTTGAAATCT GGGTACT-GG ACCACTTCTC 128697 |||||| | |||| ||| |||| |||| |||| ||| | ||||||| || || ||||||| CGAGGGTCTT CGTTTCAACA CACTTGAACT CTTGGAATAT GGGTACTGGG ACTACTTCTC 180 TGTTCTTCAC GACAAACCTG CTGGACGGAC CGTCATAGCC ACGACGGACC ATCACAAGCT 128757 || ||||| ||| |||||| | |||||||| |||||| || | | | | TGAACTTCAT GACGAACCTG CAGGACGGAC CGTCAT---- --GA---A-C -T------C- 222 TCGTAATCCC ACACTTGGTC AGACTTCCCC ATCTTCCTTC AGCAACTGCA CTATGCTTCC 128817 |||| ||| ||||||||| |||||||||| |||||| ||| |||| ||||| ||| ||| || -CGTAGCCCC GCACTTGGTC AGACTTCCCC ATCTTCTTTC AGCAGCTGCA CTACGCTGCC 281 ACCCACGGAC CGTCACAAGC ACGACGGACC GTCATAAGCT CCGTAGGTGG TCTCTTCTGC 128877 ||| || ||| |||||||||| |||||||||| |||||||||| | |||||| | ||| |||||| ACCTACAGAC CGTCACAAGC ACGACGGACC GTCATAAGCT CTGTAGGTCG TCTATTCTGC 341 AATTCTTCGC TCAAAATCTC CGCATTCAGC TTTGGACAGA TTTCCT 128923 | |||||| | |||||||||| |||||||| | |||||||||| |||||| ATTTCTTCAC TCAAAATCTC CGCATTCATC TTTGGACAGA TTTCCT 387 hqPGS_C10HBa0111D09.1+_SGN-E258752- (128520 128923) ******************************************************************************** EST sequence 6 +strand 673 n (File: SGN-E352282+) 1 GACGGGCCGT CATGGCCTCC GTCGTCCCAT ACTTCACATA TTCTTCTTCT TCTATCTTCA 61 TTACCCTCAA CAAACAGGTA TGACAGACTG TTCCAAGAAC GATGGTCTGT CGAGGGTCTC 121 CGTTCCATAA TACTTTAACT TATTTGAATT TGGGTACTGG GAGTACTCTC TGATCATTAT 181 GATGAACCAG CAGGATGGAC CGTTGTGGCA ATGACGGTCC GTCATGGACT TCCGTAATCC 241 CACACTAGGT CATACTTCCC CATCTTCCTT CAGCAACTTC TCTTCTCACT ATGATGACAC 301 CTATGGACCG TCACAGACTC GACGGATCGT CATAAGCTCC GTAGGTGGTC TCTGCTGCAT 361 TTATCACTCA AAAACTTCTG CGTTCATCTT TGGACAGATA ACCTGTAAAT AAGTAGAAAC 421 TGACATAAAA ATCAATACAA AAAGGCTTTT GGACACACAC TAAACTTAAG GAAAAAGCAT 481 TAAAAATACC GTGAAACCAC GGTACATCAA CACCCTCAAC TTAAATTTGT TGTTTGTCCT 541 CAAGTGACAC ACTATGACTC ACTACAAAAT CTTTGTACNA GAGTATCTAT ATTTTAGCGT 601 TCGCAATCAT TTGACTATCA ATCCCAATCA TTCTCATCAT GTTTATGCAT GTTATCACTA 661 TTATGCTTGA ATT Predicted gene structure (within gDNA segment 123979 to 131115): Exon 1 128530 129191 ( 662 n); cDNA 1 673 ( 673 n); score: 0.756 MATCH C10HBa0111D09.1+ SGN-E352282+ 0.756 662 0.984 C PGS_C10HBa0111D09.1+_SGN-E352282+ (128530 129191) Alignment (genomic DNA sequence = upper lines): GACGGACCGT CATGGACTCC GTCGTCCCAT ACTTGTGCAA TTTCTTCTGC TGCTATCCTC 128589 ||||| |||| ||||| |||| |||||||||| |||| || ||||||| | | ||||| || GACGGGCCGT CATGGCCTCC GTCGTCCCAT ACTT-CACAT ATTCTTCTTC TTCTATCTTC 59 ATTCTCCTTG ACGG-CAAGT ATGACGGACC GTCATAGGCA AAACGGTCCG TTTAGGGTCT 128648 ||| ||| || || || ||||| ||| || | | | | |||| | | ||||||| ATTACCCTCA ACAAACAGGT ATGACAGACT GTTCCAAGAA CGATGGTCTG TCGAGGGTCT 119 -CGTTCCAAA GTACTTCAAC -TCTTGAAAT CTGGGTACTG G-ACCACTTC TCTGTTCTTC 128705 ||||||| | ||||| ||| | || ||| ||||||||| | | ||| | |||| || | CCGTTCCATA ATACTTTAAC TTATTTGAAT TTGGGTACTG GGAGTACT-C TCTGATCATT 178 ACGACAAACC TGCTGGACGG ACCGTCATAG CCACGACGGA CCATCACAAG CTT-CGTAAT 128764 | || |||| || ||| || ||||| | | | | ||||| || ||| ||| |||||| ATGATGAACC AGCAGGATGG ACCGTTGTGG CAATGACGGT CCGTCATGGA CTTCCGTAAT 238 CCCACACTTG GTCAGACTTC CCCATCTTCC TTCAGCAA-- ---C-TG-CA CTATGCTTCC 128817 |||||||| | |||| ||||| |||||||||| |||||||| | | || ||||| | | CCCACACTAG GTCATACTTC CCCATCTTCC TTCAGCAACT TCTCTTCTCA CTATGATGAC 298 ACCCACGGAC CGTCACAAGC ACGACGGACC GTCATAAGCT CCGTAGGTGG TCTCTTCTGC 128877 ||| | |||| ||||||| | ||||||| | |||||||||| |||||||||| ||||| |||| ACCTATGGAC CGTCACAGAC TCGACGGATC GTCATAAGCT CCGTAGGTGG TCTCTGCTGC 358 AATTCTTCGC TCAAAATC-T CCGCATTCAG CTTTGGACAG ATTTCCTGCA AAACAAAGAG 128936 ||| || | |||||| | | | || |||| |||||||||| || |||| ||| || || -ATTTATCAC TCAAAAACTT CTGCGTTCAT CTTTGGACAG ATAACCTG-T AAATAAGTAG 416 AAACTTATAT AAAAATTAGC ATAAAAAGGC TTTTGG--AC ACACTAAACT TAAGGAAATT 128994 ||||| | || |||||| | | |||||||| |||||| || |||||||||| |||||||| AAACTGACAT AAAAATCAAT ACAAAAAGGC TTTTGGACAC ACACTAAACT TAAGGAAAAA 476 TTTTTAATAA TACCGTGAAA CCACGGTATA TCAACACCCT CAACTTAAAT TCATTGTTTG 129054 |||| || |||||||||| |||||||| | |||||||||| |||||||||| | ||||||| GCATTAAAAA TACCGTGAAA CCACGGTACA TCAACACCCT CAACTTAAAT TTGTTGTTTG 536 TCCTCAAGCG ATGCACTATG ACTCACTACA CAATCTTTGT ACAATAGTAT CCATGTTTTA 129114 |||||||| | | ||||||| |||||||||| ||||||||| || | ||||| | || ||||| TCCTCAAGTG ACACACTATG ACTCACTACA AAATCTTTGT ACNAGAGTAT CTATATTTTA 596 TCCTTTGCAA TCATTTGGCT ATCAATCCCG ATTAATCTCA TCACATCTAT GCATGCTATC 129174 | || |||| ||||||| || ||||||||| || | ||||| ||| | ||| ||||| |||| GCGTTCGCAA TCATTTGACT ATCAATCCCA ATCATTCTCA TCATGTTTAT GCATGTTATC 656 ACTGTTAGGC TTGAATT 129191 ||| ||| || ||||||| ACTATTATGC TTGAATT 673 hqPGS_C10HBa0111D09.1+_SGN-E352282+ (128530 129191) ******************************************************************************** EST sequence 72 -strand 464 n (File: SGN-E255290-) 1 TCCCATACTT ATGCAATTTC TTTTGCTTCT CTCTTCATTA CCCTCGACGG CAGGTATGAC 61 GGACCGTCAT AGGCACAACG GTCTATCGAG GGTCTTCGTT TCAACACACT TGAACTCTTG 121 GAATATGGGT ACTGGGACTA CTTCTCTGAA CTTCATGACG AACCTGCAGG ACGGACCGTC 181 ATGAACTCCG TAGCCCCGCA CTTGGTCAGA CTTCCCCATC TTCTTTCAGC AGCTGCACTA 241 CGCTGCCACC TACAGACCGT CACAAGCACG ACGGACCGTC ATAAGCTCTG TAGGTCGTCT 301 ATTCTGCATT TCTTCACTCA AAATCTCCGC ATTCATCTTT GGACAGATTT CCTTAAAAAG 361 TAAATCGCTT ACTACTGAAT GGAGATGCTT GGCGTCGAAA ACATTGAGAA CATGACCACC 421 AGTATATCTT TTTCGTGAGA TAAACCTTGC ACCATACGTC CATA Predicted gene structure (within gDNA segment 125675 to 130633): Exon 1 128554 128923 ( 370 n); cDNA 1 353 ( 353 n); score: 0.822 MATCH C10HBa0111D09.1+ SGN-E255290- 0.822 370 0.797 C PGS_C10HBa0111D09.1+_SGN-E255290- (128554 128923) Alignment (genomic DNA sequence = upper lines): TCCCATACTT GTGCAATTTC TTCTGCTGCT ATCCTCATTC TCCTTGACGG CAAGTATGAC 128613 |||||||||| ||||||||| || |||| || || ||||| ||| ||||| || ||||||| TCCCATACTT ATGCAATTTC TTTTGCTTCT CTCTTCATTA CCCTCGACGG CAGGTATGAC 60 GGACCGTCAT AGGCAAAACG GTCCGTTTAG GGTC-TCGTT CCAAAGTACT TCAACTCTTG 128672 |||||||||| ||||| |||| ||| | || |||| ||||| ||| ||| | |||||||| GGACCGTCAT AGGCACAACG GTCTATCGAG GGTCTTCGTT TCAACACACT TGAACTCTTG 120 AAATCTGGGT ACT-GGACCA CTTCTCTGTT CTTCACGACA AACCTGCTGG ACGGACCGTC 128731 ||| ||||| ||| |||| | |||||||| ||||| ||| ||||||| || |||||||||| GAATATGGGT ACTGGGACTA CTTCTCTGAA CTTCATGACG AACCTGCAGG ACGGACCGTC 180 ATAGCCACGA CGGACCATCA CAAGCTTCGT AATCCCACAC TTGGTCAGAC TTCCCCATCT 128791 || | | | | || | || | ||| ||| |||||||||| |||||||||| AT-G--A--A C--TCCGT-- --AG---C-- ---CCCGCAC TTGGTCAGAC TTCCCCATCT 221 TCCTTCAGCA ACTGCACTAT GCTTCCACCC ACGGACCGTC ACAAGCACGA CGGACCGTCA 128851 || ||||||| |||||||| ||| ||||| || ||||||| |||||||||| |||||||||| TCTTTCAGCA GCTGCACTAC GCTGCCACCT ACAGACCGTC ACAAGCACGA CGGACCGTCA 281 TAAGCTCCGT AGGTGGTCTC TTCTGCAATT CTTCGCTCAA AATCTCCGCA TTCAGCTTTG 128911 ||||||| || |||| |||| ||||||| || |||| ||||| |||||||||| |||| ||||| TAAGCTCTGT AGGTCGTCTA TTCTGCATTT CTTCACTCAA AATCTCCGCA TTCATCTTTG 341 GACAGATTTC CT 128923 |||||||||| || GACAGATTTC CT 353 hqPGS_C10HBa0111D09.1+_SGN-E255290- (128554 128923) ******************************************************************************** EST sequence 111 -strand 402 n (File: SGN-E258181-) 1 ACGGACCGTC ATAGGCACAA CGGTCTATAG AGGGTTTTCG TTTCAACACA CTTGAACTCT 61 TGGAATATGG GTACTGGGAC TACTTCTCTG AACTTCATGA CGAACCTGCA GGACGGACCG 121 TCATGAACTC CGTAGCCCCG CACTTGGTCA GACTTCCCCA TCTTCTTTCA GCAGCTGCAC 181 TACGCTGCCA CCTACAGACC GTCACAAGCA CGACGGACCG TCATAAGCTC TGTAGGTCGT 241 CTATTCTGCA TTTCTTCACT CAAAATCTCC GCATTCATCT TTGGACAGAT TTCCTTAAAA 301 AGTAAATCGC TTACTACTGA ATGGAGATGC TTGGCGTCGA AAACATTGAG AACATGACCA 361 CCAGTATATC TTTTTCGTGA GATAAACCTT GCACCATACG TC Predicted gene structure (within gDNA segment 126255 to 130593): Exon 1 128612 128923 ( 312 n); cDNA 1 295 ( 295 n); score: 0.814 MATCH C10HBa0111D09.1+ SGN-E258181- 0.814 312 0.776 C PGS_C10HBa0111D09.1+_SGN-E258181- (128612 128923) Alignment (genomic DNA sequence = upper lines): ACGGACCGTC ATAGGCAAAA CGGTCCGTTT AGGG-TCTCG TTCCAAAGTA CTTCAACTCT 128670 |||||||||| ||||||| || ||||| | |||| | ||| || ||| | ||| |||||| ACGGACCGTC ATAGGCACAA CGGTCTATAG AGGGTTTTCG TTTCAACACA CTTGAACTCT 60 TGAAATCTGG GTACT-GGAC CACTTCTCTG TTCTTCACGA CAAACCTGCT GGACGGACCG 128729 || ||| ||| ||||| |||| ||||||||| ||||| || | ||||||| |||||||||| TGGAATATGG GTACTGGGAC TACTTCTCTG AACTTCATGA CGAACCTGCA GGACGGACCG 120 TCATAGCCAC GACGGACCAT CACAAGCTTC GTAATCCCAC ACTTGGTCAG ACTTCCCCAT 128789 |||| | | || | | | ||| ||| | |||||||||| |||||||||| TCAT-G--A- -AC------T ------C--C GTAGCCCCGC ACTTGGTCAG ACTTCCCCAT 161 CTTCCTTCAG CAACTGCACT ATGCTTCCAC CCACGGACCG TCACAAGCAC GACGGACCGT 128849 |||| ||||| || ||||||| | ||| |||| | || ||||| |||||||||| |||||||||| CTTCTTTCAG CAGCTGCACT ACGCTGCCAC CTACAGACCG TCACAAGCAC GACGGACCGT 221 CATAAGCTCC GTAGGTGGTC TCTTCTGCAA TTCTTCGCTC AAAATCTCCG CATTCAGCTT 128909 ||||||||| |||||| ||| | ||||||| |||||| ||| |||||||||| |||||| ||| CATAAGCTCT GTAGGTCGTC TATTCTGCAT TTCTTCACTC AAAATCTCCG CATTCATCTT 281 TGGACAGATT TCCT 128923 |||||||||| |||| TGGACAGATT TCCT 295 hqPGS_C10HBa0111D09.1+_SGN-E258181- (128612 128923) ******************************************************************************** EST sequence 3 +strand 716 n (File: SGN-E578039+) 1 CGAGGGTCTT TGTTCTAATA CACTTCAACT CTTGGAATTT GGGTACTGGG ATCACTTCTC 61 TGAACTTCAC GACGAACCTG CAGGACGGAC CGTCAGATCC ACGACGGACC GTCACAAGCT 121 TCGTAATCCC ACACTTAGTC AGACTTCCCT ATCTTCCTTC AGCAGCTGCA CTACGCTTCC 181 ACCTACGGAC CGTCACAAGC ACGACGGACC GTCATAAGCT CCGTAGGTGG TTTCTTCTGC 241 ATTTCTTCGC TCAAAATCTC CGCATTCAGC TTTGGACAGA TTTCCTGCAA AACAAAGAGT 301 AACTTATATA AAAATTAGCA CAAAAAGGCT TTTGGACACA CTAAGCTTAA GGAAAAAGTA 361 TTAATAATAC CGTGAAACCA CGGTATATCA ACACCCTCAA CTTAAATTAG TTGTTTGTCC 421 TCAAGCGACG CACTATGACT CACTACACAA TCTTTGTACA ATAGTATCCA TGTTTTATCC 481 TTTGCAATCA TTTGGCTATC AATCCCGATT AATCTCATCA AATCTATGCA TGCTATCACT 541 ATTAGGTTTG AATTTTGTGG GATCAGAATA TGACACAGAC TTACCATGCA CTAACACCTA 601 TCCTCTTCAA TTTCTCACCG AGGTGCTAAC AATTCTAGTA TTGCAACTAG TGTCCTCACT 661 ATAAGACAAA ATCCTCCTTT TTCACACAGT GATTTTAGTT TGAGTATAAG GATTAC Predicted gene structure (within gDNA segment 126373 to 129963): Exon 1 128642 129353 ( 712 n); cDNA 3 716 ( 714 n); score: 0.927 MATCH C10HBa0111D09.1+ SGN-E578039+ 0.927 712 0.994 C PGS_C10HBa0111D09.1+_SGN-E578039+ (128642 129353) Alignment (genomic DNA sequence = upper lines): AGGGTC-TCG TTCCAAAGTA CTTCAACTCT TGAAATCTGG GTACT-GGAC CACTTCTCTG 128699 |||||| | | ||| || | |||||||||| || ||| ||| ||||| ||| |||||||||| AGGGTCTTTG TTCTAATACA CTTCAACTCT TGGAATTTGG GTACTGGGAT CACTTCTCTG 62 TTCTTCACGA CAAACCTGCT GGACGGACCG TCATAGCCAC GACGGACCAT CACAAGCTTC 128759 |||||||| | ||||||| |||||||||| ||| | |||| |||||||| | |||||||||| AACTTCACGA CGAACCTGCA GGACGGACCG TCAGATCCAC GACGGACCGT CACAAGCTTC 122 GTAATCCCAC ACTTGGTCAG ACTTCCCCAT CTTCCTTCAG CAACTGCACT ATGCTTCCAC 128819 |||||||||| |||| ||||| ||||||| || |||||||||| || ||||||| | |||||||| GTAATCCCAC ACTTAGTCAG ACTTCCCTAT CTTCCTTCAG CAGCTGCACT ACGCTTCCAC 182 CCACGGACCG TCACAAGCAC GACGGACCGT CATAAGCTCC GTAGGTGGTC TCTTCTGCAA 128879 | |||||||| |||||||||| |||||||||| |||||||||| ||||||||| ||||||||| CTACGGACCG TCACAAGCAC GACGGACCGT CATAAGCTCC GTAGGTGGTT TCTTCTGCAT 242 TTCTTCGCTC AAAATCTCCG CATTCAGCTT TGGACAGATT TCCTGCAAAA CAAAGAGAAA 128939 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || TTCTTCGCTC AAAATCTCCG CATTCAGCTT TGGACAGATT TCCTGCAAAA CAAAGAGTAA 302 CTTATATAAA AATTAGCATA AAAAGGCTTT TGGACACACT AAACTTAAGG AAATTTTTTT 128999 |||||||||| |||||||| | |||||||||| |||||||||| || ||||||| ||| | || CTTATATAAA AATTAGCACA AAAAGGCTTT TGGACACACT AAGCTTAAGG AAAAAGTATT 362 AATAATACCG TGAAACCACG GTATATCAAC ACCCTCAACT TAAATTCATT GTTTGTCCTC 129059 |||||||||| |||||||||| |||||||||| |||||||||| |||||| || |||||||||| AATAATACCG TGAAACCACG GTATATCAAC ACCCTCAACT TAAATTAGTT GTTTGTCCTC 422 AAGCGATGCA CTATGACTCA CTACACAATC TTTGTACAAT AGTATCCATG TTTTATCCTT 129119 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCGACGCA CTATGACTCA CTACACAATC TTTGTACAAT AGTATCCATG TTTTATCCTT 482 TGCAATCATT TGGCTATCAA TCCCGATTAA TCTCATCACA TCTATGCATG CTATCACTGT 129179 |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||| | TGCAATCATT TGGCTATCAA TCCCGATTAA TCTCATCAAA TCTATGCATG CTATCACTAT 542 TAGGCTTGAA TTTTGTGGGA TCAGAACATG ACACAGACTC ACCACGCACT AACACCTATC 129239 |||| ||||| |||||||||| |||||| ||| ||||||||| |||| ||||| |||||||||| TAGGTTTGAA TTTTGTGGGA TCAGAATATG ACACAGACTT ACCATGCACT AACACCTATC 602 CTCTTCAATT TCTCACTGAG GTGCTAACAA TTATGGTATT GTAACTACTG TCCTCACTTT 129299 |||||||||| |||||| ||| |||||||||| || | ||||| | ||||| || |||||||| | CTCTTCAATT TCTCACCGAG GTGCTAACAA TTCTAGTATT GCAACTAGTG TCCTCACTAT 662 AAAACAAAAT CCTCCTTTTT CACACAATGA TTTCAGTTTG AGTATAAGGA TTAC 129353 || ||||||| |||||||||| |||||| ||| ||| |||||| |||||||||| |||| AAGACAAAAT CCTCCTTTTT CACACAGTGA TTTTAGTTTG AGTATAAGGA TTAC 716 hqPGS_C10HBa0111D09.1+_SGN-E578039+ (128642 129353) ******************************************************************************** EST sequence 1 +strand 411 n (File: SGN-E577891+) 1 TTCGTTTCAA AATACTTCAG CTCTTGGAAT CTGGGTACTG GAATCACTTC TCTGATCTTC 61 ACGACGAACC TGCAGGACGG ACCGTCATAG CCATGACGGA CCGTCACAAT CTTCGTAATC 121 CCACACTTGG TGAGACTTCC CCATCTTCCT TCAGCAGCTT CTCTACGCTG CCACCTACGG 181 AGCGTCAAAG GCACGATGGA CCGTCATAAG CTCAGTAGGT GGTCTCTTCT ACATTTTTTC 241 GCTCAAAATC TCTGCTTTCA GCTTTGGACA GATTTCCTGC AAAATAAAGA GAAACTTATA 301 CCAAAATTAG CACAAAAAGG CTTACGGACA CACTAAACTT AAGGCAAAAG TATTAATTAT 361 ACCGTGAAAC CACGGTATAT CAGGGACATG AACTCGAAGG CCATTGTTGG C Predicted gene structure (within gDNA segment 127380 to 129927): Exon 1 128648 129019 ( 372 n); cDNA 2 374 ( 373 n); score: 0.886 MATCH C10HBa0111D09.1+ SGN-E577891+ 0.886 372 0.905 C PGS_C10HBa0111D09.1+_SGN-E577891+ (128648 129019) Alignment (genomic DNA sequence = upper lines): TCGTTCCAAA GTACTTCAAC TCTTGAAATC TGGGTACTGG -ACCACTTCT CTGTTCTTCA 128706 ||||| |||| ||||||| | ||||| |||| |||||||||| | ||||||| ||| |||||| TCGTTTCAAA ATACTTCAGC TCTTGGAATC TGGGTACTGG AATCACTTCT CTGATCTTCA 61 CGACAAACCT GCTGGACGGA CCGTCATAGC CACGACGGAC CATCACAAGC TTCGTAATCC 128766 |||| ||||| || ||||||| |||||||||| || ||||||| | |||||| | |||||||||| CGACGAACCT GCAGGACGGA CCGTCATAGC CATGACGGAC CGTCACAATC TTCGTAATCC 121 CACACTTGGT CAGACTTCCC CATCTTCCTT CAGCAACTGC ACTATGCTTC CACCCACGGA 128826 |||||||||| ||||||||| |||||||||| ||||| || | ||| ||| | |||| ||||| CACACTTGGT GAGACTTCCC CATCTTCCTT CAGCAGCTTC TCTACGCTGC CACCTACGGA 181 CCGTCACAAG CACGACGGAC CGTCATAAGC TCCGTAGGTG GTCTCTTCTG CAATTCTTCG 128886 ||||| | | ||||| |||| |||||||||| || ||||||| ||||||||| || || |||| GCGTCAAAGG CACGATGGAC CGTCATAAGC TCAGTAGGTG GTCTCTTCTA CATTTTTTCG 241 CTCAAAATCT CCGCATTCAG CTTTGGACAG ATTTCCTGCA AAACAAAGAG AAACTTATAT 128946 |||||||||| | || ||||| |||||||||| |||||||||| ||| |||||| ||||||||| CTCAAAATCT CTGCTTTCAG CTTTGGACAG ATTTCCTGCA AAATAAAGAG AAACTTATAC 301 AAAAATTAGC ATAAAAAGGC TTTTGGACAC ACTAAACTTA AGGAAATTTT TTTAATAATA 129006 ||||||||| | |||||||| || |||||| |||||||||| ||| || | ||||| ||| CAAAATTAGC ACAAAAAGGC TTACGGACAC ACTAAACTTA AGGCAAAAGT ATTAATTATA 361 CCGTGAAACC ACG 129019 |||||||||| ||| CCGTGAAACC ACG 374 hqPGS_C10HBa0111D09.1+_SGN-E577891+ (128648 129019) ******************************************************************************** EST sequence 115 -strand 816 n (File: SGN-E546067-) 1 TAGCCATGAC GGACCGTCAC AAGCTTCGTA ATCCCACACT TGGTCAGACT CCCCCATCTT 61 CTTTCAGCAA CTTCTCTACA CTGCCACCTA CGGACCGTCA CAAGCACGAC GGACCGTCAT 121 CAGCTCCATA GGTGGTCTCT TCTGCATTTC TTCTCTCAAA ATCTCCGCAT TTGGCTTTGG 181 ACAAATTTCA TGATCACTTC AGCTCGCGGC TCAATCCACA CGTCTGGATC TTCGGTATTT 241 TTCTTCTTTC TTATGTGTGT TGCCTTGAAT GCCTCAGCTT GAGTTACTGG TCTTCCTAGT 301 TCCTTTTCCA ATTTCCTCCT CACACTTCCT TGACTTTGAG CCCCACTTGG TGTAGAGAAC 361 CACCCTTAAT AGATGATCTA GCCTTCACAC CGATCTCGCT CATCTGCTTA AATCTTGAAT 421 CATTTTCCCA ATGCACAAGT AATTTTTTCC AATCATCCTA TAGAATCCAC TTAGGTTTTT 481 GATCATTTTT ACGAGCTTTA TTCAACAAAC TAGCAAGAAC ACGCGTAACT TTCTTGTGAA 541 AGTTTGCACA AATTTTGGCC TCATGTTCCA GATGCCAAGC ACATTGTTTC TAAACTCCAA 601 AAATATTTGT CTCTTGAGAT TGCTTGGCAT CTTGCCCCAA GTAGGAAAAG CATCTCTATA 661 GAGATCTTTG ATTGACTGAG AAATGATCTC CACAACATCA TCTGGATTGA AACTGTTCAA 721 AATTGATAAT TGGAGTTCTC AGGAATCAAC GACGGAAACT AGGTCTTCAC AGTAAGTGAT 781 GGAATGGTCG GCGACAAGCT CAATGGAGAG GCAACG Predicted gene structure (within gDNA segment 127979 to 135953): Exon 1 128733 128923 ( 191 n); cDNA 1 191 ( 191 n); score: 0.906 Intron 1 128924 131764 (2841 n); Pd: 0.040 (s: 0.88), Pa: 0.000 (s: 0.67) Exon 2 131765 131806 ( 42 n); cDNA 192 231 ( 40 n); score: 0.667 MATCH C10HBa0111D09.1+ SGN-E546067- 0.906 233 0.286 C PGS_C10HBa0111D09.1+_SGN-E546067- (128733 128923,131765 131806) Alignment (genomic DNA sequence = upper lines): TAGCCACGAC GGACCATCAC AAGCTTCGTA ATCCCACACT TGGTCAGACT TCCCCATCTT 128792 |||||| ||| ||||| |||| |||||||||| |||||||||| |||||||||| ||||||||| TAGCCATGAC GGACCGTCAC AAGCTTCGTA ATCCCACACT TGGTCAGACT CCCCCATCTT 60 CCTTCAGCAA CTGCACTATG CTTCCACCCA CGGACCGTCA CAAGCACGAC GGACCGTCAT 128852 | |||||||| || | ||| || ||||| | |||||||||| |||||||||| |||||||||| CTTTCAGCAA CTTCTCTACA CTGCCACCTA CGGACCGTCA CAAGCACGAC GGACCGTCAT 120 AAGCTCCGTA GGTGGTCTCT TCTGCAATTC TTCGCTCAAA ATCTCCGCAT TCAGCTTTGG 128912 |||||| || |||||||||| |||||| ||| ||| |||||| |||||||||| | ||||||| CAGCTCCATA GGTGGTCTCT TCTGCATTTC TTCTCTCAAA ATCTCCGCAT TTGGCTTTGG 180 ACAGATTTCC TGCAAAACAA AGAGAAACTT ATATAAAAAT TAGCATAAAA AGGCTTTTGG 128972 ||| ||||| | ACAAATTTCA T......... .......... .......... .......... .......... 191 ACACACTAAA CTTAAGGAAA TTTTTTTAAT AATACCGTGA AACCACGGTA TATCAACACC 129032 .......... .......... .......... .......... .......... .......... 191 CTCAACTTAA ATTCATTGTT TGTCCTCAAG CGATGCACTA TGACTCACTA CACAATCTTT 129092 .......... .......... .......... .......... .......... .......... 191 GTACAATAGT ATCCATGTTT TATCCTTTGC AATCATTTGG CTATCAATCC CGATTAATCT 129152 .......... .......... .......... .......... .......... .......... 191 CATCACATCT ATGCATGCTA TCACTGTTAG GCTTGAATTT TGTGGGATCA GAACATGACA 129212 .......... .......... .......... .......... .......... .......... 191 CAGACTCACC ACGCACTAAC ACCTATCCTC TTCAATTTCT CACTGAGGTG CTAACAATTA 129272 .......... .......... .......... .......... .......... .......... 191 TGGTATTGTA ACTACTGTCC TCACTTTAAA ACAAAATCCT CCTTTTTCAC ACAATGATTT 129332 .......... .......... .......... .......... .......... .......... 191 CAGTTTGAGT ATAAGGATTA CTTTTCAACA CTCACTCTTA GAACAAAGTC ACACTCATTC 129392 .......... .......... .......... .......... .......... .......... 191 ATACCTTTTG CCATAAGGTT GCCCTTATTT TCACTTCCTT AAGTTCGCTA CACAACCCTT 129452 .......... .......... .......... .......... .......... .......... 191 AAGATCACGA TAGGACTTTT TTAGCTAGTA ACATAGGCTC GGGGTCAGGT AAGGTATATT 129512 .......... .......... .......... .......... .......... .......... 191 TTGGTATACT TTAGTGACTT TTTTCCCTCC TTGACATATC GGCTAAACCT TCCACAGTCT 129572 .......... .......... .......... .......... .......... .......... 191 CTCATTTTAT CTTGCCCAGT TTCTCATATT CTTTCACCTT GCTATTTTCT CTTCTTTCTT 129632 .......... .......... .......... .......... .......... .......... 191 CATTTGTGTA AGTGACTCTC TTCTTTTCTT GCTTGTATTT CTTGTGTACT TTTATTTTTC 129692 .......... .......... .......... .......... .......... .......... 191 TTTACTTTTT TTTCATCTAA TTCTTGAGTC ACTTTACTTT TTTTCTTTCT CTCTCTTTGT 129752 .......... .......... .......... .......... .......... .......... 191 TCTTTCAACC CCACTTTCCA GAGCATTCCT CATAGTAGCC ACCCTCAACT CATGGCTTTG 129812 .......... .......... .......... .......... .......... .......... 191 CCATGAGTCA AGGTACACAA TACCCAAAGT TGGGTCAGGG CCATAACGAA GGTTGTTTAT 129872 .......... .......... .......... .......... .......... .......... 191 GCATTAGCCA CCCTCAACTT ATGCTTTTGG CATAAGCTGA GGTGCACATG TCCAAGGAGG 129932 .......... .......... .......... .......... .......... .......... 191 GACCAGGGCC AACACATTGT TCCCAGAAAA GATCAGTTGG GGTGAAAAAG AAAGGTCTAA 129992 .......... .......... .......... .......... .......... .......... 191 TTTTAAGCTC AGATTATTTG GATCAAAGAA GGATAAATTT CATTTGGTTT CTTTTATTTA 130052 .......... .......... .......... .......... .......... .......... 191 GGCTAGAAAT GGGCTATATT GAATAAGGGC CTATGATCCT TTCCTAATTG TCTATTACAA 130112 .......... .......... .......... .......... .......... .......... 191 CTTACTTTTA GCAGGACTAA CCAGGCAAGT TCTAGCTCAG TACCAATAGT AGACTATTCA 130172 .......... .......... .......... .......... .......... .......... 191 AATTTCCTCA CACTCACTTG ATATCTCATC ACTATACCAG ATTATCAGAC ACCTAGTTCG 130232 .......... .......... .......... .......... .......... .......... 191 AATTTAAGAC TTAGGGTAAT GCAATGGTGT AACTCTGTTT CATGCTTAGA GCCACACAAT 130292 .......... .......... .......... .......... .......... .......... 191 TATCAGTTAC TATGCCTAGT CATGCATTAT TTTCCAGTTT ATCAGGATAT CATTTTAGCC 130352 .......... .......... .......... .......... .......... .......... 191 GTCATGCTTC AGACTTAAAC TATGTACAAA AGATATAAAC ATACCTGTTC AACAGAAAAA 130412 .......... .......... .......... .......... .......... .......... 191 GTAATCAGTC TTTTGGGGAA AAAGAACACA TGCAAGAAAA CCCCTAAAGA GGATAGTGAA 130472 .......... .......... .......... .......... .......... .......... 191 TTGGGCTACT AAGACTTCAC CCTAACACTC ACTATCCATT TACCCCACCC CCAACAAAAA 130532 .......... .......... .......... .......... .......... .......... 191 GGCATGCAAT TGTCCCCAAT GCATAAAAAT CTAAATACAA GAGTGGTAGG TGAAGCAAAC 130592 .......... .......... .......... .......... .......... .......... 191 CTGTGGCGCA AAGCGCCGTC GATCAACAAG ATCGTGGGTT CGGTTCCCCA GAACCACGTC 130652 .......... .......... .......... .......... .......... .......... 191 CTCTGCAATC TGGACACCCT CAGTGGTGTG CTCAGCAACA TCCACACCAT CAGTAGTGCC 130712 .......... .......... .......... .......... .......... .......... 191 TCCTGCTATC TCCACAGTGC GGGAGCTAGA CGCCCCAACC GCTAACTCAG ATGCTCTCAG 130772 .......... .......... .......... .......... .......... .......... 191 TCGGTCCGCC TCCTTCTCAG CAAGGGAGGC TCTCCTCGCA GCCTCTATCA CGGCGCTCCT 130832 .......... .......... .......... .......... .......... .......... 191 TCTTCCGTGC TCGCGCCTCT TCCTCTGCTC GACCCCTACG CCTCTTGGCA CTCTCTCAAG 130892 .......... .......... .......... .......... .......... .......... 191 GGGAAGGTGG TGGAATGTCA GAGGTAGCAA AAAGGGCCGC CAACATGGTG TCCTCAGTAG 130952 .......... .......... .......... .......... .......... .......... 191 GCTCGACAGA AGGGGCCTCA GACTCCGGCA CCCTAGTCTC TAAGATCGTG TCGATGTCTG 131012 .......... .......... .......... .......... .......... .......... 191 CACGAAGACT ATCGACTGCA GCCTGAAGAT TCGAGACATC CACCGGAGGG GTTGGTCGGG 131072 .......... .......... .......... .......... .......... .......... 191 CTAGCACTCT CAACTCAAAG GTGTCCAGAC GCTGGTTAAC TTCAGCGATC TTCCGCTCTG 131132 .......... .......... .......... .......... .......... .......... 191 TAAACTGCAT CATGTTCCTC TCCAGACGCT CTTCGGACTC AGTGATCAAC CTCTGCATCC 131192 .......... .......... .......... .......... .......... .......... 191 ACGGCTGGAT ATGATACAGA AGAGTGGCCA TTTGTGCCTC TAGTTGTTGG ACCCTTGCAA 131252 .......... .......... .......... .......... .......... .......... 191 GCGGGACCAG TATCGATAGA GGGGATGTGC GAGAGGAGCT CGGGGCTGTG CTACTACCCG 131312 .......... .......... .......... .......... .......... .......... 191 GGATAGACTC GACCAGGGTA GTGTCAGTGG ACGCCTGTGT AGCTGTGCGG GCCTAGGCTA 131372 .......... .......... .......... .......... .......... .......... 191 CCGTATCAGC AAGATCATCA GCAAGTGGGG GCATCTCTGG ATGGGGCCCT CTTCGTAGAG 131432 .......... .......... .......... .......... .......... .......... 191 CCAACTCATT GGCCTCGTCT CTGATGAGGC CGACGTCCAC AGTGCCCTGT GGGGTCTTAA 131492 .......... .......... .......... .......... .......... .......... 191 GCTAATCTAC GTGCCATATG GGCATACCTG CGGACCTGAA AATGGCAAAG ATCATACACG 131552 .......... .......... .......... .......... .......... .......... 191 GGAAGGGGTA GGTAGTAGTG ACCTTGAATG CCCTCTCGTG CATGATTGCC TGGTGAAGCC 131612 .......... .......... .......... .......... .......... .......... 191 ATGCGAAGTC CACCTCGAAT CCGGCTAACA TCGCTGCCAT CAACACTGCT CGATCCCAGG 131672 .......... .......... .......... .......... .......... .......... 191 TAACGATGTT ATCAGCAGCT GTGGGGGAAA GGTAGTGACG GATGAGCAGC CACAAGAACT 131732 .......... .......... .......... .......... .......... .......... 191 TTGCTGTGAA CCTGAGGTTG GCCTTCTTGA TGGCCCCCTT CGGCTCAGTG ACCCAATCGG 131792 | | ||| | |||| | | | ||||| .......... .......... .......... ..GATCACTT CAGCTC-GCG GCTCAATCCA 218 CACCCTCTCC ATCT 131806 || | ||| |||| CA-CGTCTGG ATCT 231 hqPGS_C10HBa0111D09.1+_SGN-E546067- (128733 128923) ******************************************************************************** EST sequence 44 -strand 624 n (File: SGN-E336039-) 1 ACCGTCATAA GCTCCGTAGG TGGTCTCTTC TGCATTTCTT CGCTCAAAAT CTCTACATTC 61 ATCTTTGGAC AGATTTCTGT GAAACCACGT TATATCAACT GTCCATCACG CACTCCGTAA 121 CCCCATGCTT GGTCAGAATT CTCCATCTTC TTTCAGCAGC TGCGCTACGA TACCATCTAC 181 GGATCTTCAC GAGCACGACG AACCGTCACA ATCTCCGTAG GTGGTAGTTT TCTATATTTC 241 TTGCTAAAAA ACCTCCGTAT TCATCTTTTA GACAAATTTC CTCCCATTTC TGGTTGGAGC 301 CTACTCGTCT ATCGCATGTT CTCGCTGCTG CTTGCTGCTG TCGGAGCTGG TGGCCGGAGT 361 TTTGCTGTTG CTGCTCCTAA TCCTGCAAAA AGAAGAGGAA CGAGAGGTGG AGGGAGATGG 421 CTTGGCGTCG ACTACTGGCT GTCCTTGCCT GTGGAGCTGC TCGCTGCTCT CCTCGCCTCC 481 ACTGGAGAGA ATGGGGTAAC GAGAGGAGGG GGGACGGCAG CTACCTGGCT CTTCGCCAGT 541 TGCTGCTGCC CACCGGTGGT GTTTGGAGCC GCTGGAATTG AGAAGACGAG AGGAGGAGGA 601 GCAACGGAGG AGTTGGAGGC GGAT Predicted gene structure (within gDNA segment 127035 to 135807): Exon 1 128038 128051 ( 14 n); cDNA 86 99 ( 14 n); score: 0.571 Intron 1 128052 128742 ( 691 n); Pd: 0.716 (s: 0), Pa: 0.000 (s: 0.78) Exon 2 128743 128927 ( 185 n); cDNA 100 286 ( 187 n); score: 0.749 Intron 2 128928 134604 (5677 n); Pd: 0.000 (s: 0.71), Pa: 0.999 (s: 0.57) Exon 3 134605 134648 ( 44 n); cDNA 287 330 ( 44 n); score: 0.568 MATCH C10HBa0111D09.1+ SGN-E336039- 0.749 243 0.389 C PGS_C10HBa0111D09.1+_SGN-E336039- (128038 128051,128743 128927,134605 134648) Alignment (genomic DNA sequence = upper lines): CAAGTAGCAT TAAGGCGAGT TCTAACGTCG GCCATCCATT AAAAAGACTT TTAAGCGAAA 128097 || || || || CACGTTATAT CAAC...... .......... .......... .......... .......... 99 GAATTATTAA TACATGCAAG ACACTAATCT AGAAATGTTA TTTTAGTTAG GGTTTATCTC 128157 .......... .......... .......... .......... .......... .......... 99 ATTATTTGCC TATGGTTCCC ACAACCCTAG TTATGGAGTT TAGTTACTCA TAGCCATAAA 128217 .......... .......... .......... .......... .......... .......... 99 CACAATATTC AAATATATTA AATACGAATT CATGTACTTA CTTCAATGAG AAACAATAAA 128277 .......... .......... .......... .......... .......... .......... 99 ATCCACAGTT TGCTTGATTA ATCTCCAAAA ATCACTTGCA AGAATCTAAA AATCTAACAA 128337 .......... .......... .......... .......... .......... .......... 99 TAATACACAA AGTCTAATAA TACGGAGTCT AACTATCTGG TGTCTAATCT CATAGAGTCT 128397 .......... .......... .......... .......... .......... .......... 99 AACCTCAAAA AAGAGATTTT TCGAACTATT TATAAAAAAA ACAAAAACCT AATTAAAAAA 128457 .......... .......... .......... .......... .......... .......... 99 GGATTCTAAT TGCTTGAAAT TTGCCAAAAT GCGGCTGGGT CGACGGACCA CGCGACGGAG 128517 .......... .......... .......... .......... .......... .......... 99 CGTCGTAGTC ACGACGGACC GTCATGGACT CCGTCGTCCC ATACTTGTGC AATTTCTTCT 128577 .......... .......... .......... .......... .......... .......... 99 GCTGCTATCC TCATTCTCCT TGACGGCAAG TATGACGGAC CGTCATAGGC AAAACGGTCC 128637 .......... .......... .......... .......... .......... .......... 99 GTTTAGGGTC TCGTTCCAAA GTACTTCAAC TCTTGAAATC TGGGTACTGG ACCACTTCTC 128697 .......... .......... .......... .......... .......... .......... 99 TGTTCTTCAC GACAAACCTG CTGGACGGAC CGTCATAGCC ACGACGGACC ATCACAAGCT 128757 | || ||||| || .......... .......... .......... .......... .....TGTCC ATCACGCACT 114 TCGTAATCCC ACACTTGGTC AGACTTCCCC ATCTTCCTTC AGCAACTGCA CTATGCTTCC 128817 ||||| ||| | ||||||| ||| ||| || |||||| ||| |||| |||| ||| | | || CCGTAACCCC ATGCTTGGTC AGAATTCTCC ATCTTCTTTC AGCAGCTGCG CTACGATACC 174 ACCCACGGAC CGTCACAAGC ACGACGGACC GTCATAAGCT CCGTAGGTGG T-CTCTTCTG 128876 | | ||||| | |||| ||| |||||| ||| |||| || || |||||||||| | | |||| ATCTACGGAT CTTCACGAGC ACGACGAACC GTCACAATCT CCGTAGGTGG TAGTTTTCTA 234 CAATTCTTCG CT-CAAAATC TCCGCATTCA GC-TTTGGAC AGATTTCCTG CAAAACAAAG 128934 | ||||| | || |||| | |||| ||||| | ||| ||| | ||||||| | | TATTTCTT-G CTAAAAAACC TCCGTATTCA TCTTTTAGAC AAATTTCCTC CCA....... 286 AGAAACTTAT ATAAAAATTA GCATAAAAAG GCTTTTGGAC ACACTAAACT TAAGGAAATT 128994 .......... .......... .......... .......... .......... .......... 286 TTTTTAATAA TACCGTGAAA CCACGGTATA TCAACACCCT CAACTTAAAT TCATTGTTTG 129054 .......... .......... .......... .......... .......... .......... 286 TCCTCAAGCG ATGCACTATG ACTCACTACA CAATCTTTGT ACAATAGTAT CCATGTTTTA 129114 .......... .......... .......... .......... .......... .......... 286 TCCTTTGCAA TCATTTGGCT ATCAATCCCG ATTAATCTCA TCACATCTAT GCATGCTATC 129174 .......... .......... .......... .......... .......... .......... 286 ACTGTTAGGC TTGAATTTTG TGGGATCAGA ACATGACACA GACTCACCAC GCACTAACAC 129234 .......... .......... .......... .......... .......... .......... 286 CTATCCTCTT CAATTTCTCA CTGAGGTGCT AACAATTATG GTATTGTAAC TACTGTCCTC 129294 .......... .......... .......... .......... .......... .......... 286 ACTTTAAAAC AAAATCCTCC TTTTTCACAC AATGATTTCA GTTTGAGTAT AAGGATTACT 129354 .......... .......... .......... .......... .......... .......... 286 TTTCAACACT CACTCTTAGA ACAAAGTCAC ACTCATTCAT ACCTTTTGCC ATAAGGTTGC 129414 .......... .......... .......... .......... .......... .......... 286 CCTTATTTTC ACTTCCTTAA GTTCGCTACA CAACCCTTAA GATCACGATA GGACTTTTTT 129474 .......... .......... .......... .......... .......... .......... 286 AGCTAGTAAC ATAGGCTCGG GGTCAGGTAA GGTATATTTT GGTATACTTT AGTGACTTTT 129534 .......... .......... .......... .......... .......... .......... 286 TTCCCTCCTT GACATATCGG CTAAACCTTC CACAGTCTCT CATTTTATCT TGCCCAGTTT 129594 .......... .......... .......... .......... .......... .......... 286 CTCATATTCT TTCACCTTGC TATTTTCTCT TCTTTCTTCA TTTGTGTAAG TGACTCTCTT 129654 .......... .......... .......... .......... .......... .......... 286 CTTTTCTTGC TTGTATTTCT TGTGTACTTT TATTTTTCTT TACTTTTTTT TCATCTAATT 129714 .......... .......... .......... .......... .......... .......... 286 CTTGAGTCAC TTTACTTTTT TTCTTTCTCT CTCTTTGTTC TTTCAACCCC ACTTTCCAGA 129774 .......... .......... .......... .......... .......... .......... 286 GCATTCCTCA TAGTAGCCAC CCTCAACTCA TGGCTTTGCC ATGAGTCAAG GTACACAATA 129834 .......... .......... .......... .......... .......... .......... 286 CCCAAAGTTG GGTCAGGGCC ATAACGAAGG TTGTTTATGC ATTAGCCACC CTCAACTTAT 129894 .......... .......... .......... .......... .......... .......... 286 GCTTTTGGCA TAAGCTGAGG TGCACATGTC CAAGGAGGGA CCAGGGCCAA CACATTGTTC 129954 .......... .......... .......... .......... .......... .......... 286 CCAGAAAAGA TCAGTTGGGG TGAAAAAGAA AGGTCTAATT TTAAGCTCAG ATTATTTGGA 130014 .......... .......... .......... .......... .......... .......... 286 TCAAAGAAGG ATAAATTTCA TTTGGTTTCT TTTATTTAGG CTAGAAATGG GCTATATTGA 130074 .......... .......... .......... .......... .......... .......... 286 ATAAGGGCCT ATGATCCTTT CCTAATTGTC TATTACAACT TACTTTTAGC AGGACTAACC 130134 .......... .......... .......... .......... .......... .......... 286 AGGCAAGTTC TAGCTCAGTA CCAATAGTAG ACTATTCAAA TTTCCTCACA CTCACTTGAT 130194 .......... .......... .......... .......... .......... .......... 286 ATCTCATCAC TATACCAGAT TATCAGACAC CTAGTTCGAA TTTAAGACTT AGGGTAATGC 130254 .......... .......... .......... .......... .......... .......... 286 AATGGTGTAA CTCTGTTTCA TGCTTAGAGC CACACAATTA TCAGTTACTA TGCCTAGTCA 130314 .......... .......... .......... .......... .......... .......... 286 TGCATTATTT TCCAGTTTAT CAGGATATCA TTTTAGCCGT CATGCTTCAG ACTTAAACTA 130374 .......... .......... .......... .......... .......... .......... 286 TGTACAAAAG ATATAAACAT ACCTGTTCAA CAGAAAAAGT AATCAGTCTT TTGGGGAAAA 130434 .......... .......... .......... .......... .......... .......... 286 AGAACACATG CAAGAAAACC CCTAAAGAGG ATAGTGAATT GGGCTACTAA GACTTCACCC 130494 .......... .......... .......... .......... .......... .......... 286 TAACACTCAC TATCCATTTA CCCCACCCCC AACAAAAAGG CATGCAATTG TCCCCAATGC 130554 .......... .......... .......... .......... .......... .......... 286 ATAAAAATCT AAATACAAGA GTGGTAGGTG AAGCAAACCT GTGGCGCAAA GCGCCGTCGA 130614 .......... .......... .......... .......... .......... .......... 286 TCAACAAGAT CGTGGGTTCG GTTCCCCAGA ACCACGTCCT CTGCAATCTG GACACCCTCA 130674 .......... .......... .......... .......... .......... .......... 286 GTGGTGTGCT CAGCAACATC CACACCATCA GTAGTGCCTC CTGCTATCTC CACAGTGCGG 130734 .......... .......... .......... .......... .......... .......... 286 GAGCTAGACG CCCCAACCGC TAACTCAGAT GCTCTCAGTC GGTCCGCCTC CTTCTCAGCA 130794 .......... .......... .......... .......... .......... .......... 286 AGGGAGGCTC TCCTCGCAGC CTCTATCACG GCGCTCCTTC TTCCGTGCTC GCGCCTCTTC 130854 .......... .......... .......... .......... .......... .......... 286 CTCTGCTCGA CCCCTACGCC TCTTGGCACT CTCTCAAGGG GAAGGTGGTG GAATGTCAGA 130914 .......... .......... .......... .......... .......... .......... 286 GGTAGCAAAA AGGGCCGCCA ACATGGTGTC CTCAGTAGGC TCGACAGAAG GGGCCTCAGA 130974 .......... .......... .......... .......... .......... .......... 286 CTCCGGCACC CTAGTCTCTA AGATCGTGTC GATGTCTGCA CGAAGACTAT CGACTGCAGC 131034 .......... .......... .......... .......... .......... .......... 286 CTGAAGATTC GAGACATCCA CCGGAGGGGT TGGTCGGGCT AGCACTCTCA ACTCAAAGGT 131094 .......... .......... .......... .......... .......... .......... 286 GTCCAGACGC TGGTTAACTT CAGCGATCTT CCGCTCTGTA AACTGCATCA TGTTCCTCTC 131154 .......... .......... .......... .......... .......... .......... 286 CAGACGCTCT TCGGACTCAG TGATCAACCT CTGCATCCAC GGCTGGATAT GATACAGAAG 131214 .......... .......... .......... .......... .......... .......... 286 AGTGGCCATT TGTGCCTCTA GTTGTTGGAC CCTTGCAAGC GGGACCAGTA TCGATAGAGG 131274 .......... .......... .......... .......... .......... .......... 286 GGATGTGCGA GAGGAGCTCG GGGCTGTGCT ACTACCCGGG ATAGACTCGA CCAGGGTAGT 131334 .......... .......... .......... .......... .......... .......... 286 GTCAGTGGAC GCCTGTGTAG CTGTGCGGGC CTAGGCTACC GTATCAGCAA GATCATCAGC 131394 .......... .......... .......... .......... .......... .......... 286 AAGTGGGGGC ATCTCTGGAT GGGGCCCTCT TCGTAGAGCC AACTCATTGG CCTCGTCTCT 131454 .......... .......... .......... .......... .......... .......... 286 GATGAGGCCG ACGTCCACAG TGCCCTGTGG GGTCTTAAGC TAATCTACGT GCCATATGGG 131514 .......... .......... .......... .......... .......... .......... 286 CATACCTGCG GACCTGAAAA TGGCAAAGAT CATACACGGG AAGGGGTAGG TAGTAGTGAC 131574 .......... .......... .......... .......... .......... .......... 286 CTTGAATGCC CTCTCGTGCA TGATTGCCTG GTGAAGCCAT GCGAAGTCCA CCTCGAATCC 131634 .......... .......... .......... .......... .......... .......... 286 GGCTAACATC GCTGCCATCA ACACTGCTCG ATCCCAGGTA ACGATGTTAT CAGCAGCTGT 131694 .......... .......... .......... .......... .......... .......... 286 GGGGGAAAGG TAGTGACGGA TGAGCAGCCA CAAGAACTTT GCTGTGAACC TGAGGTTGGC 131754 .......... .......... .......... .......... .......... .......... 286 CTTCTTGATG GCCCCCTTCG GCTCAGTGAC CCAATCGGCA CCCTCTCCAT CTACTGACAG 131814 .......... .......... .......... .......... .......... .......... 286 GTGCAAGGCC ATCCACCTCT TGGTGGTCTC TCCCAGTGCT GTCTCAGCAA GAACTGTCCA 131874 .......... .......... .......... .......... .......... .......... 286 TCCTTTACTA TCTGACAGCG GTAGTCAAAC TCGGCAGTGA TAGGGGTTCG AGTAGCATCT 131934 .......... .......... .......... .......... .......... .......... 286 GCACTGTCAC CGTATAGAAA CCGGCGGATG GCTGGCAGGG AAATGTCAAC CTGCACACCC 131994 .......... .......... .......... .......... .......... .......... 286 CAGACTCGAA CCTGCTCCAG TGGGGCCTAT TTAACGGGAG CAGCCCGCCT ATCGATCTGT 132054 .......... .......... .......... .......... .......... .......... 286 GATCGGAGAG TCGCTACGTA GGATGCGTAG AACTCTCGGA TCATTTCCTC ACTGTATCAT 132114 .......... .......... .......... .......... .......... .......... 286 CCCAACAGGC ATGCTTTCCA CTCTAAGCGA TGCCTGGTGA AGAGGTTGTG GATCTCCGGC 132174 .......... .......... .......... .......... .......... .......... 286 ATCGTTGGGA GACTCCCTGT AAGTACCCGC CGCTCCAAGG TAAGTGTTTG AGTCATCACA 132234 .......... .......... .......... .......... .......... .......... 286 CCTTTATCAG TCAGAAACTT GGCATCGGAG TAGACTTGAA ACTGCCCGTC GACACACCAC 132294 .......... .......... .......... .......... .......... .......... 286 CGGTTGCGCA AGTCAGTGGC TGGAGTGGGG ACCTGAGCTG GTGCGCTGGA TGTAGAGTCT 132354 .......... .......... .......... .......... .......... .......... 286 GAACTGTCAG CCTCATCAAA CGAGGCTGAC GCTGCAGCAG TGGCGGGGGC GGGAACCTCA 132414 .......... .......... .......... .......... .......... .......... 286 GTAGAGTCAG AGGCTTCCTC GGACCAGGAT ACTCCCAAGG AGCCAAATGC TCCTTCCTCA 132474 .......... .......... .......... .......... .......... .......... 286 TTTCTGGTTG ACCCAGAGAG TGTGCCGGTC AGTGTGCACT CCTCATCAGA CTGGGAGGCA 132534 .......... .......... .......... .......... .......... .......... 286 GTGACTACGC CGGACGCCAC CTTTTTGGGT GTGGCTTTGG GAGCACGTGC AGCACGGGAA 132594 .......... .......... .......... .......... .......... .......... 286 GGTGTAGAAG TGCTTGGGGG CAGATACTCA GGGTCCCGGT CATCATAAGA GCCGATGATC 132654 .......... .......... .......... .......... .......... .......... 286 ATGCGTGCAG ACGGGGCGAC AGACCTTGAT TGCCCACGTG CGTAGCTTCG GTCTTGCTTG 132714 .......... .......... .......... .......... .......... .......... 286 GGTACCATAG TAGATAGTAC TTGCAAAGGA TCAATATTAG TACGATTAGT GGCAAACAAG 132774 .......... .......... .......... .......... .......... .......... 286 ACAAGTGAAA CCATAAAAAA TAAAACATTA AAAATAGTAT GTCATTGCTG TAGAAGCAGT 132834 .......... .......... .......... .......... .......... .......... 286 GACACACGAC GGGCCAGGTG ACGGCTCGTC GTGACTATGA CGGACCGTCG TGAGGTCCGT 132894 .......... .......... .......... .......... .......... .......... 286 CGTGTTTTAC TTAGACTGTA TATATAGAGA ACCCTGAAGG AGAGTCTTTG ACTAGAATGA 132954 .......... .......... .......... .......... .......... .......... 286 TGGTATGTGC AGGACGAACC ATCACAGGTA CGACGATCCG TCGTATATGT CCGTCGTAGG 133014 .......... .......... .......... .......... .......... .......... 286 ACACTTGAGA AAAAATGGAG ACCCTTAGGA GAGGGCTCTC TGACCGTTAT GACGGTCATG 133074 .......... .......... .......... .......... .......... .......... 286 CAGGACGGTC TGTCGTGGGT ACGACGGTCC GTCACATGTG TCCATTGAAG GACACTTGGA 133134 .......... .......... .......... .......... .......... .......... 286 AAAAAATGAG AGACCCTTAG AAACAGGGTC TCTGACAACC AGAACGGTTG TGTAGGATGG 133194 .......... .......... .......... .......... .......... .......... 286 ACCGTTGTGA AGACGATGGT CCGTCACATG TGTCCGTTGA AGGACACTTG GGAAAAAATG 133254 .......... .......... .......... .......... .......... .......... 286 AGAGACCCTT AGAAATAGGG TCTCTGTCTA GCATGACGGT TGTGCAGGAC GGACCGTCGT 133314 .......... .......... .......... .......... .......... .......... 286 AAGTACGACG ATCCTTCACA TGTGTCCTTT GGGACAGGGG TGCTAGGGCT TATGTGATGG 133374 .......... .......... .......... .......... .......... .......... 286 ACTCTATGAC GGTCTGTCGT GGGTACGACG GTCCGTCATC GGGGTCTCGT TCTGAATGAC 133434 .......... .......... .......... .......... .......... .......... 286 AGTGACAAAA CTAAGGGTAC CCGAAGCATC CCCAATGAAC CCACATCAAC CTTGTAGTGT 133494 .......... .......... .......... .......... .......... .......... 286 TTTGGACCTA CATGTGTCTA ACCCAACTAC CTAGGAAACT AGCAATGCAA AAGCACCTAT 133554 .......... .......... .......... .......... .......... .......... 286 GTCTAGGGTG GTAAACATGG CAATTTCGAA CATTTGTAAC CTAGGTTAGA GAGAATCATC 133614 .......... .......... .......... .......... .......... .......... 286 TAAAGTAAAC AACATACGAA GAGGAACTAA GCATAATACT AACTAGTAAA CAAAAAACAA 133674 .......... .......... .......... .......... .......... .......... 286 GATAAATGAG TTTAATTTTA GAGACACATA CCTTAGAAAT GGAGAAAAAC AAATGCACAC 133734 .......... .......... .......... .......... .......... .......... 286 GTACTCGGTG GAAAGGTAGA CACTCACAGC AGCAGTTTCC ACTAGTAGAT AACACTTTAG 133794 .......... .......... .......... .......... .......... .......... 286 AGCTTTGGAG AATTGTGAGA GGGCAATGAT CGGTGGTTGA GAGAGTGTGG AAGTTGAAAA 133854 .......... .......... .......... .......... .......... .......... 286 GAGAGGGGAG ATGAGAGGAA TAATGAAGTA ATGGGGGTGA AATGAGGGGT TAGAAGGGTT 133914 .......... .......... .......... .......... .......... .......... 286 TAAACGTTCT GATTTAGAAA AAGGGTTCCG CCGGGTCGAG TCGGGTATAC TTCACTAATC 133974 .......... .......... .......... .......... .......... .......... 286 ACGCGACGGT TCCCCAACGA CGGTCCATCG CAGTTGTGAC GAACCGTCGT TTGTTCCGTC 134034 .......... .......... .......... .......... .......... .......... 286 ACGTCTTCCC TAGATTCAAA ATAACAGAAA AACGTACCTG GTACGACGGA TGCATACGAC 134094 .......... .......... .......... .......... .......... .......... 286 GGTCCGTCGC AAGCGCGACG GTCCGTCGAT ATGTCCGTCA GTGACTGCTG CAGAGTAATT 134154 .......... .......... .......... .......... .......... .......... 286 TTCTGCAGAA ATTCCTGGTG ATGTGCCTGC AAATTTAAAA CCTATTAGTA GAAAAATGCT 134214 .......... .......... .......... .......... .......... .......... 286 ACCATTACTA AAAAAACTAT AAGTATTGGG TTGCCTCCCA AGAAGCGCCT GATTTATTGC 134274 .......... .......... .......... .......... .......... .......... 286 CGCGGCACGA CTGAGAACCC TTGATTACTC AGACTTCATC AAGATGGTAT GCCTCTATAA 134334 .......... .......... .......... .......... .......... .......... 286 CTTTATTCCC CGATGCTTTA TGTCCAAAAT AGAGTTTTAT TCTATCTCTA TTCCACTTAA 134394 .......... .......... .......... .......... .......... .......... 286 ACCACACTCC CTCCTTGGCG TTTTACTCAA CTGCTCCATG AGGGAATACT TGGGTAATCA 134454 .......... .......... .......... .......... .......... .......... 286 AGTAGGGGCC AGTCTATTTA GACCTGAGCT TGCCTGGAAA ACAAGGCACC CCAGAACTGT 134514 .......... .......... .......... .......... .......... .......... 286 CTACAAGCAC GAAATCCCCA ACCATAAACT CTTGTTTTGC ATTTATCTGT TCAGTCTCCT 134574 .......... .......... .......... .......... .......... .......... 286 TCTTCATCTT TTCTTTGTGG GATATGGCAG ATACCGATTG GAGCTCACCA CTCTGCCTCA 134634 | | | ||| |||| || ||| | || .......... .......... .......... TTTCTGGTTG GAGCCTACTC GTCTATCGCA 316 TGGTCCTACA AATG 134648 || || | || TGTTCTCGCT GCTG 330 hqPGS_C10HBa0111D09.1+_SGN-E336039- (128743 128927) ******************************************************************************** EST sequence 29 +strand 222 n (File: SGN-E356584+) 1 CCCCACACTT GTTCAGAATT CCCCATCTTC CTTCATCAGC AGAACTACGA TGTCACCTAT 61 GGACCGGCAC GAGGATGACG GACCGTGAAA AGCTCAGTAG GTTGTACTTT TCTGTATTTC 121 ATGCTCAAAA ACTTTTGAAT TCATCTTTTA CACAGATTTC CTGCAAATAA AGAGAAACTT 181 ATATCAAAAT TAGCACAAAA AGGCTTTTGG ACACACTAAA CT Predicted gene structure (within gDNA segment 126803 to 129594): Exon 1 128765 128984 ( 220 n); cDNA 2 222 ( 221 n); score: 0.802 MATCH C10HBa0111D09.1+ SGN-E356584+ 0.802 220 0.991 C PGS_C10HBa0111D09.1+_SGN-E356584+ (128765 128984) Alignment (genomic DNA sequence = upper lines): CCCACACTTG GTCAGACTTC CCCATCTTCC TTCAGCAACT GCACTATGCT TCCACCCACG 128824 |||||||||| ||||| ||| |||||||||| |||| || | | |||| | | |||| | | CCCACACTTG TTCAGAATTC CCCATCTTCC TTCATCAGCA GAACTACGAT GTCACCTATG 61 GACCGTCACA AGCACGACGG ACCGTCATAA GCTCCGTAGG TGGT-CTCTT CTGCAATTCT 128883 ||||| ||| || | ||||| ||||| | || |||| ||||| | || || || ||| | ||| GACCGGCACG AGGATGACGG ACCGTGAAAA GCTCAGTAGG TTGTACTTTT CTGTATTTCA 121 TCGCTCAAAA TC-TCCGCAT TCAGC-TTTG GACAGATTTC CTGCAAAACA AAGAGAAACT 128941 | |||||||| | | | || ||| | ||| ||||||||| |||| ||| | |||||||||| T-GCTCAAAA ACTTTTGAAT TCATCTTTTA CACAGATTTC CTGC-AAATA AAGAGAAACT 179 TATATAAAAA TTAGCATAAA AAGGCTTTTG GACACACTAA ACT 128984 ||||| |||| |||||| ||| |||||||||| |||||||||| ||| TATATCAAAA TTAGCACAAA AAGGCTTTTG GACACACTAA ACT 222 hqPGS_C10HBa0111D09.1+_SGN-E356584+ (128765 128984) ******************************************************************************** EST sequence 22 +strand 560 n (File: SGN-E244201+) 1 TAAGCTTGCA CTTATTTTCA CTGCATTAAG TTTGCTATAC AACTCTTAGG ATCGCGATAG 61 GACTTTCTTA GCTTGTAACA TAGGCTCAGG GTCAGGTAGG GTATATTTAG GTATACTTTA 121 GTGACTTTTT GCCCTCCTTG AAATATCGGC TAAACATACC ATTTTCTATC ATTTTATTTG 181 CCCAGTTTCT CATATTTTTT CACCTTGTTA TTTTCCCTTC TTTCTTCATT TTTGTAAGTG 241 ACTCTTCTTT TCTTGCTTGT ATTTCTTGTG TGTGTGTGTG TGTGTGTGTG TGTGTATATA 301 TATATATATA TATATATATA TATATTAACT TTTCTTTCAA CTAATTCTTG AGTCAATTTA 361 CTTTTATTCT TTCTCTCTCT TTGTTCTTTC AACCCCACTT TCAAGAGCAT TCCTCATAAT 421 AACCACTCTC AACTCATGGC TTTGCCATGA GTCAAAGTAT TCAATACCCA AAGTTGGGTC 481 AGAGCCATAA AAAGGGTTGT TTACTACATT AGCCACTCTC AACTTATGCT TTTGGCATAA 541 TCTGAGGTGC ACATGTCCAA Predicted gene structure (within gDNA segment 126640 to 130537): Exon 1 129406 129927 ( 522 n); cDNA 1 560 ( 560 n); score: 0.717 MATCH C10HBa0111D09.1+ SGN-E244201+ 0.717 522 0.932 C PGS_C10HBa0111D09.1+_SGN-E244201+ (129406 129927) Alignment (genomic DNA sequence = upper lines): TAAGGTTGCC CTTATTTTCA CTTCCTTAAG TTCGCTACAC AACCCTTAAG ATCACGATAG 129465 |||| |||| |||||||||| || | ||||| || |||| || ||| |||| | ||| |||||| TAAGCTTGCA CTTATTTTCA CTGCATTAAG TTTGCTATAC AACTCTTAGG ATCGCGATAG 60 GACTTTTTTA GCTAGTAACA TAGGCTCGGG GTCAGGTAAG GTATATTTTG GTATACTTTA 129525 |||||| ||| ||| |||||| ||||||| || |||||||| | |||||||| | |||||||||| GACTTTCTTA GCTTGTAACA TAGGCTCAGG GTCAGGTAGG GTATATTTAG GTATACTTTA 120 GTGACTTTTT TCCCTCCTTG ACATATCGGC TAAACCTTCC ACAGTCTCTC ATTTTATCTT 129585 |||||||||| ||||||||| | |||||||| ||||| | || | ||| || ||||||| || GTGACTTTTT GCCCTCCTTG AAATATCGGC TAAACATACC ATTTTCTATC ATTTTAT-TT 179 GCCCAGTTTC TCATATTCTT TCACCTTGCT ATTTTCTCTT CTTTCTTCAT TTGTGTAAGT 129645 |||||||||| ||||||| || |||||||| | |||||| ||| |||||||||| || ||||||| GCCCAGTTTC TCATATTTTT TCACCTTGTT ATTTTCCCTT CTTTCTTCAT TTTTGTAAGT 239 GA--C-TC-- -TCTT-C--- T-TTTC---- -T-TG-CT-T GTAT-T-TCT -TGTGTA-CT 129682 || | || |||| | | |||| | || | | || | | | | |||||| | GACTCTTCTT TTCTTGCTTG TATTTCTTGT GTGTGTGTGT GTGTGTGTGT GTGTGTATAT 299 -T-T-TAT-T -T-T-TCT-T -TA-CTT--- -TTT-TTTCA TCTAATTCTT GAGTCACTTT 129727 | | ||| | | | | | | || || ||| ||||| ||||||||| |||||| ||| ATATATATAT ATATATATAT ATATATTAAC TTTTCTTTCA ACTAATTCTT GAGTCAATTT 359 ACTTTTTTTC TTTCTCTCTC TTTGTTCTTT CAACCCCACT TTCCAGAGCA TTCCTCATAG 129787 |||||| ||| |||||||||| |||||||||| |||||||||| ||| |||||| ||||||||| ACTTTTATTC TTTCTCTCTC TTTGTTCTTT CAACCCCACT TTCAAGAGCA TTCCTCATAA 419 TAGCCACCCT CAACTCATGG CTTTGCCATG AGTCAAGGTA CACAATACCC AAAGTTGGGT 129847 || |||| || |||||||||| |||||||||| |||||| ||| |||||||| |||||||||| TAACCACTCT CAACTCATGG CTTTGCCATG AGTCAAAGTA TTCAATACCC AAAGTTGGGT 479 CAGGGCCATA ACGAAGGTTG TTTA-TGCAT TAGCCACCCT CAACTTATGC TTTTGGCATA 129906 ||| |||||| | | ||||| |||| | ||| ||||||| || |||||||||| |||||||||| CAGAGCCATA AAAAGGGTTG TTTACTACAT TAGCCACTCT CAACTTATGC TTTTGGCATA 539 AGCTGAGGTG CACATGTCCA A 129927 | |||||||| |||||||||| | ATCTGAGGTG CACATGTCCA A 560 hqPGS_C10HBa0111D09.1+_SGN-E244201+ (129406 129927) ******************************************************************************** EST sequence 2 -strand 706 n (File: SGN-E577987-) 1 AGGTGTGTGT GGACATTGAC TTTGACAATT TTGCGGAGCA CAATAACTTT CTGTTGTTCC 61 ACACCAACTC CAAATACTAC AACACTCATT GCTTTTACAT TTTCCACCAC CACCTCCCAT 121 TCCACATCGC GGATATGGAG GTGGAGGTGA TAAGGAGGCG GGGGTCGAAA GGAGGATGAG 181 GCTAGAGCAC GGAAGAAGGA GCGCCGCAAG ACGGAGGCTA TGAGGACACT ACTGAAGGTG 241 TCTAGATTAC AGAGGTAGTG GGTTCCGGGG AACCACACCC ACTAGCTTGC TGATCGTCTG 301 CGCTTTGCGC CCCATGTTTT CTTCACCTAC CACTCTCGTA TTTCAATTTT TTATGCATTG 361 GGGACAATTC CATGTCTTTT TGTTGGGGGT GGGGTAAATG GAATGTGAGT TCTAGGGTGA 421 AGTCTGAGTA TCCCCATTCA CTATCATCTT TTGGGTTTTT CTTGCCTATG TTCTTTTTCC 481 CCAAGAGACT GATTATTTTT ACTGTTGAAC CGGCATGTCT ATATCTTGTG TACATAAAAT 541 AACTCTAAAG CATGATGGCT AAAACAAAAA TGATATCCTT ATGAAATGAA AATGATGCAT 601 GACTAGAAAT AGTAATAATT GTTGAAAAAG AAGAAAGTTG ACGATTGGAA CAGGTCCAAC 661 ACGTATCTGC AGCAAGTGTG GATGAAGAAG GAAGCTGATG ATTGAA Predicted gene structure (within gDNA segment 134397 to 126267): Exon 1 130875 130815 ( 61 n); cDNA 156 212 ( 57 n); score: 0.803 Intron 1 130814 130696 ( 119 n); Pd: 0.000 (s: 0.80), Pa: 0.000 (s: 0.72) Exon 2 130695 130343 ( 353 n); cDNA 213 566 ( 354 n); score: 0.833 Intron 2 130342 128922 (1421 n); Pd: 0.900 (s: 0.80), Pa: 1.000 (s: 0) Exon 3 128921 128917 ( 5 n); cDNA 567 571 ( 5 n); score: 0.800 Intron 3 128916 127074 (1843 n); Pd: 0.000 (s: 0), Pa: 0.985 (s: 0) Exon 4 127073 127068 ( 6 n); cDNA 572 577 ( 6 n); score: 1.000 MATCH C10HBa0111D09.1- SGN-E577987- 0.829 425 0.602 C PGS_C10HBa0111D09.1-_SGN-E577987- (130875 130815,130695 130343,128921 128917,127073 127068) Alignment (genomic DNA sequence = upper lines): AGGCGTAGGG GTCGAGCAGA GGAAGAGGCG CGAGCACGGA AGAAGGAGCG CCGTGATAGA 130816 ||||| ||| ||||| || ||| ||||| ||||||||| |||||||||| ||| | ||| AGGCG--GGG GTCGAAAGGA GGATGAGGCT AGAGCACGGA AGAAGGAGCG CCG-CA-AGA 211 GGCTGCGAGG AGAGCCTCCC TTGCTGAGAA GGAGGCGGAC CGACTGAGAG CATCTGAGTT 130756 C......... .......... .......... .......... .......... .......... 212 AGCGGTTGGG GCGTCTAGCT CCCGCACTGT GGAGATAGCA GGAGGCACTA CTGATGGTGT 130696 .......... .......... .......... .......... .......... .......... 212 GGATGTTGCT GAGCACACCA CTGAGGGTGT CCAGATTGCA GAGGACGT-G GTTCTGGGGA 130637 ||| | | | ||| |||| | |||| ||||| | ||||| || |||| || | |||| ||||| GGAGGCT-AT GAGGACACTA CTGAAGGTGT CTAGATTACA GAGGTAGTGG GTTCCGGGGA 271 ACCGAACCCA CGATCTTGTT GATCGACGGC GCTTTGCGCC ACAGGTTTGC TTCACCTACC 130577 ||| ||||| | | |||| | ||||| | || |||||||||| || |||| | |||||||||| ACCACACCCA CTAGCTTGCT GATCGTCTGC GCTTTGCGCC CCATGTTTTC TTCACCTACC 331 ACTCTTGTAT TT-AGATTTT TATGCATTGG GGACAATTGC ATGCCTTTTT GTTGGGGGTG 130518 ||||| |||| || | |||| |||||||||| |||||||| | ||| |||||| |||||||||| ACTCTCGTAT TTCAATTTTT TATGCATTGG GGACAATTCC ATGTCTTTTT GTTGGGGGTG 391 GGGTAAATGG ATAGTGAGTG TTAGGGTGAA GTCTTAGTAG CCCAATTCAC TATCCTCTTT 130458 |||||||||| | |||||| ||||||||| |||| |||| ||| |||||| |||| ||||| GGGTAAATGG AATGTGAGTT CTAGGGTGAA GTCTGAGTAT CCCCATTCAC TATCATCTTT 451 AGGGGTTTTC TTGCATGTGT TCTTTTTCCC CAAAAGACTG ATTACTTTTT CTGTTGAACA 130398 ||| ||||| |||| | ||| |||||||||| ||| |||||| |||| |||| ||||||||| TGGGTTTTTC TTGCCTATGT TCTTTTTCCC CAAGAGACTG ATTATTTTTA CTGTTGAACC 511 GGTATGTTTA TATCTTTTGT ACATAGTTTA AGTCTGAAGC ATGACGGCTA AAATGATATC 130338 || |||| || |||||| ||| ||||| || | ||| |||| |||| ||||| ||| GGCATGTCTA TATCTTGTGT ACATAAAATA ACTCTAAAGC ATGATGGCTA AAACA..... 566 CTGATAAACT GGAAAATAAT GCATGACTAG GCATAGTAAC TGATAATTGT GTGGCTCTAA 130278 .......... .......... .......... .......... .......... .......... 566 GCATGAAACA GAGTTACACC ATTGCATTAC CCTAAGTCTT AAATTCGAAC TAGGTGTCTG 130218 .......... .......... .......... .......... .......... .......... 566 ATAATCTGGT ATAGTGATGA GATATCAAGT GAGTGTGAGG AAATTTGAAT AGTCTACTAT 130158 .......... .......... .......... .......... .......... .......... 566 TGGTACTGAG CTAGAACTTG CCTGGTTAGT CCTGCTAAAA GTAAGTTGTA ATAGACAATT 130098 .......... .......... .......... .......... .......... .......... 566 AGGAAAGGAT CATAGGCCCT TATTCAATAT AGCCCATTTC TAGCCTAAAT AAAAGAAACC 130038 .......... .......... .......... .......... .......... .......... 566 AAATGAAATT TATCCTTCTT TGATCCAAAT AATCTGAGCT TAAAATTAGA CCTTTCTTTT 129978 .......... .......... .......... .......... .......... .......... 566 TCACCCCAAC TGATCTTTTC TGGGAACAAT GTGTTGGCCC TGGTCCCTCC TTGGACATGT 129918 .......... .......... .......... .......... .......... .......... 566 GCACCTCAGC TTATGCCAAA AGCATAAGTT GAGGGTGGCT AATGCATAAA CAACCTTCGT 129858 .......... .......... .......... .......... .......... .......... 566 TATGGCCCTG ACCCAACTTT GGGTATTGTG TACCTTGACT CATGGCAAAG CCATGAGTTG 129798 .......... .......... .......... .......... .......... .......... 566 AGGGTGGCTA CTATGAGGAA TGCTCTGGAA AGTGGGGTTG AAAGAACAAA GAGAGAGAAA 129738 .......... .......... .......... .......... .......... .......... 566 GAAAAAAAGT AAAGTGACTC AAGAATTAGA TGAAAAAAAA GTAAAGAAAA ATAAAAGTAC 129678 .......... .......... .......... .......... .......... .......... 566 ACAAGAAATA CAAGCAAGAA AAGAAGAGAG TCACTTACAC AAATGAAGAA AGAAGAGAAA 129618 .......... .......... .......... .......... .......... .......... 566 ATAGCAAGGT GAAAGAATAT GAGAAACTGG GCAAGATAAA ATGAGAGACT GTGGAAGGTT 129558 .......... .......... .......... .......... .......... .......... 566 TAGCCGATAT GTCAAGGAGG GAAAAAAGTC ACTAAAGTAT ACCAAAATAT ACCTTACCTG 129498 .......... .......... .......... .......... .......... .......... 566 ACCCCGAGCC TATGTTACTA GCTAAAAAAG TCCTATCGTG ATCTTAAGGG TTGTGTAGCG 129438 .......... .......... .......... .......... .......... .......... 566 AACTTAAGGA AGTGAAAATA AGGGCAACCT TATGGCAAAA GGTATGAATG AGTGTGACTT 129378 .......... .......... .......... .......... .......... .......... 566 TGTTCTAAGA GTGAGTGTTG AAAAGTAATC CTTATACTCA AACTGAAATC ATTGTGTGAA 129318 .......... .......... .......... .......... .......... .......... 566 AAAGGAGGAT TTTGTTTTAA AGTGAGGACA GTAGTTACAA TACCATAATT GTTAGCACCT 129258 .......... .......... .......... .......... .......... .......... 566 CAGTGAGAAA TTGAAGAGGA TAGGTGTTAG TGCGTGGTGA GTCTGTGTCA TGTTCTGATC 129198 .......... .......... .......... .......... .......... .......... 566 CCACAAAATT CAAGCCTAAC AGTGATAGCA TGCATAGATG TGATGAGATT AATCGGGATT 129138 .......... .......... .......... .......... .......... .......... 566 GATAGCCAAA TGATTGCAAA GGATAAAACA TGGATACTAT TGTACAAAGA TTGTGTAGTG 129078 .......... .......... .......... .......... .......... .......... 566 AGTCATAGTG CATCGCTTGA GGACAAACAA TGAATTTAAG TTGAGGGTGT TGATATACCG 129018 .......... .......... .......... .......... .......... .......... 566 TGGTTTCACG GTATTATTAA AAAAATTTCC TTAAGTTTAG TGTGTCCAAA AGCCTTTTTA 128958 .......... .......... .......... .......... .......... .......... 566 TGCTAATTTT TATATAAGTT TCTCTTTGTT TTGCAGGAAA TCTGTCCAAA GCTGAATGCG 128898 ||| | .......... .......... .......... ......AAAA T......... .......... 571 GAGATTTTGA GCGAAGAATT GCAGAAGAGA CCACCTACGG AGCTTATGAC GGTCCGTCGT 128838 .......... .......... .......... .......... .......... .......... 571 GCTTGTGACG GTCCGTGGGT GGAAGCATAG TGCAGTTGCT GAAGGAAGAT GGGGAAGTCT 128778 .......... .......... .......... .......... .......... .......... 571 GACCAAGTGT GGGATTACGA AGCTTGTGAT GGTCCGTCGT GGCTATGACG GTCCGTCCAG 128718 .......... .......... .......... .......... .......... .......... 571 CAGGTTTGTC GTGAAGAACA GAGAAGTGGT CCAGTACCCA GATTTCAAGA GTTGAAGTAC 128658 .......... .......... .......... .......... .......... .......... 571 TTTGGAACGA GACCCTAAAC GGACCGTTTT GCCTATGACG GTCCGTCATA CTTGCCGTCA 128598 .......... .......... .......... .......... .......... .......... 571 AGGAGAATGA GGATAGCAGC AGAAGAAATT GCACAAGTAT GGGACGACGG AGTCCATGAC 128538 .......... .......... .......... .......... .......... .......... 571 GGTCCGTCGT GACTACGACG CTCCGTCGCG TGGTCCGTCG ACCCAGCCGC ATTTTGGCAA 128478 .......... .......... .......... .......... .......... .......... 571 ATTTCAAGCA ATTAGAATCC TTTTTTAATT AGGTTTTTGT TTTTTTTATA AATAGTTCGA 128418 .......... .......... .......... .......... .......... .......... 571 AAAATCTCTT TTTTGAGGTT AGACTCTATG AGATTAGACA CCAGATAGTT AGACTCCGTA 128358 .......... .......... .......... .......... .......... .......... 571 TTATTAGACT TTGTGTATTA TTGTTAGATT TTTAGATTCT TGCAAGTGAT TTTTGGAGAT 128298 .......... .......... .......... .......... .......... .......... 571 TAATCAAGCA AACTGTGGAT TTTATTGTTT CTCATTGAAG TAAGTACATG AATTCGTATT 128238 .......... .......... .......... .......... .......... .......... 571 TAATATATTT GAATATTGTG TTTATGGCTA TGAGTAACTA AACTCCATAA CTAGGGTTGT 128178 .......... .......... .......... .......... .......... .......... 571 GGGAACCATA GGCAAATAAT GAGATAAACC CTAACTAAAA TAACATTTCT AGATTAGTGT 128118 .......... .......... .......... .......... .......... .......... 571 CTTGCATGTA TTAATAATTC TTTCGCTTAA AAGTCTTTTT AATGGATGGC CGACGTTAGA 128058 .......... .......... .......... .......... .......... .......... 571 ACTCGCCTTA ATGCTACTTG CTGGACCAAG GAGGTAGATA ATAGGAAAAG AATTATTAAC 127998 .......... .......... .......... .......... .......... .......... 571 ATAGATTTAG TGTATACTAT CTAATAGGCT AGTATTGATT GGTACGAGGT AATAACTTAG 127938 .......... .......... .......... .......... .......... .......... 571 TCAAATATTG AATACGATGC TTAATATGAG GTAAGGATAA GGGTTAGGAT AGCAACACAC 127878 .......... .......... .......... .......... .......... .......... 571 GTAGCCGGAC CAAGGTACGG AATGAGATTT TCTAGATGCC GGACCAAGGA TTTAGAAATA 127818 .......... .......... .......... .......... .......... .......... 571 ATAACTTATC ACTTTGCATG CAAGATACTA GAAAATAATT GTTATAGTTG GAATTATCAA 127758 .......... .......... .......... .......... .......... .......... 571 GTTATGAACC TGTGAGGAAC ACGTAAACCC TAGTTACTTT GATTAATTGA TTAAAACCCA 127698 .......... .......... .......... .......... .......... .......... 571 TCATTCAAAA GTTGTTAAGT GTCTCTTTCA AGTTCGTTAT TTATTTTCAC TCATTTAGAA 127638 .......... .......... .......... .......... .......... .......... 571 ATAGAAACCC CCCGTTATTG TTTTTACTTT CCAAGGAAGC CATTAACCCA ACAATAGTAA 127578 .......... .......... .......... .......... .......... .......... 571 TAACAAGTTG AAGTTAAGTC TAGACTATTT TCCTCGTGGG AACGATCCCA ACCTCACTAG 127518 .......... .......... .......... .......... .......... .......... 571 TTGGGTCATT TACTTGACAC GACCGCTTTA CTTCTTATTC GAGAAGTAAG TTTGAGAATA 127458 .......... .......... .......... .......... .......... .......... 571 TCACCCAACA TGTTAGTATT AATGGTATAA GGTACTAAAT TGGTCTAATT TATGGTATAG 127398 .......... .......... .......... .......... .......... .......... 571 AGTCAGTAGA TGAAGTATTA GGTGCATTGG AAGTCAAACG TCAAGGGACG ACCAAGACAT 127338 .......... .......... .......... .......... .......... .......... 571 TCAAAAACTA AGTCACCTAT GTGCCTCATA TGTGGTTCTA TGTGTTTATG TGTGATTCAT 127278 .......... .......... .......... .......... .......... .......... 571 GAGGTTTTAA GGTACTTAAA TGAGTTATTA TAGCATGTAT AGGAAGTGTA TCAATTTTCG 127218 .......... .......... .......... .......... .......... .......... 571 TGGAGTTTAG AGGTTAAACG TCCAAGAACG TCAATGACGT TTGAAAGATG TGCCTTGAAG 127158 .......... .......... .......... .......... .......... .......... 571 TGACCTTGTG TGTCTAGGCA TGTTATGTCG AGTTTTATGT GTTCGTTTTA GACGAAACTT 127098 .......... .......... .......... .......... .......... .......... 571 ATGTGATATG TGTTAAACTC ATAGGATATC 127068 |||||| .......... .......... ....GATATC 577 hqPGS_C10HBa0111D09.1-_SGN-E577987- (130875 130815,130695 130343) ******************************************************************************** EST sequence 84 +strand 547 n (File: SGN-E243970+) 1 CCCCCTCGAG AGAGTGCCAA GAGGCGTAGG GGCCGATCAG AGGATGAGGC ACAAGCAAAG 61 AAGAAGGAGC GCCGAGAGAT GGAGGCTGCG AGGAGAGCCT CGCTGAGACG GAGGCACACC 121 AAATCAGAGC ATCGCAGATA GCGGATGGGG CGTCTAGCTC CCGCACTGTA GAGATAGCAA 181 GAGGCACTAC TGATGGTGCG GTTGTTGCTG AGGACATCAC TGAGGGTGTC CAGATTGCTG 241 AGGACACCAC TGAGGGTGTC CAGATTGCAG AGGATGTGGG TTCCAGGAAA CCGGACCCAC 301 CATCTTGTTA AATCGACGGT GCTTTGCGCC ACAGGTTTGC TTCACCTACC ACTCTAATAT 361 TTAGATTTTT TATGCATTGG GGACAGTTGC ATGCTTTTTT GTTGGGGGTG GGGTAAATGG 421 AAAGTGAGTG TTAGGGTGAA GTCTGAGTAG CCCAACTCAC TATCCTCTTT TGGGGTTTTC 481 TTGCCTGTGT TCTTTTTCCC CAAAAGACTG ATTACTTTTT TTGTTGAACC GACACGTTAT 541 ATATTTT Predicted gene structure (within gDNA segment 132799 to 129528): Exon 1 130710 130399 ( 312 n); cDNA 215 529 ( 315 n); score: 0.893 MATCH C10HBa0111D09.1- SGN-E243970+ 0.893 312 0.570 C PGS_C10HBa0111D09.1-_SGN-E243970+ (130710 130399) Alignment (genomic DNA sequence = upper lines): CACTACTGAT GGTGTGGATG TTGCTGAGCA CACCACTGAG GGTGTCCAGA TTGCAGAGGA 130651 || ||||| ||||| | |||||||| | |||||||||| |||||||||| |||||||||| CATCACTGAG GGTGTCCAGA TTGCTGAGGA CACCACTGAG GGTGTCCAGA TTGCAGAGGA 274 CGT-GGTTCT GGGGAACCGA ACCCACGATC TTGTT-GATC GACGGCGCTT TGCGCCACAG 130593 || ||||| || ||||| |||||| ||| ||||| ||| ||||| |||| |||||||||| TGTGGGTTCC AGGAAACCGG ACCCACCATC TTGTTAAATC GACGGTGCTT TGCGCCACAG 334 GTTTGCTTCA CCTACCACTC TTGTATTTAG A-TTTTTATG CATTGGGGAC AATTGCATGC 130534 |||||||||| |||||||||| | ||||||| | |||||||| |||||||||| | |||||||| GTTTGCTTCA CCTACCACTC TAATATTTAG ATTTTTTATG CATTGGGGAC AGTTGCATGC 394 CTTTTTGTTG GGGGTGGGGT AAATGGATAG TGAGTGTTAG GGTGAAGTCT TAGTAGCCCA 130474 ||||||||| |||||||||| ||||||| || |||||||||| |||||||||| ||||||||| TTTTTTGTTG GGGGTGGGGT AAATGGAAAG TGAGTGTTAG GGTGAAGTCT GAGTAGCCCA 454 ATTCACTATC CTCTTTAGGG GTTTTCTTGC ATGTGTTCTT TTTCCCCAAA AGACTGATTA 130414 | |||||||| |||||| ||| |||||||||| ||||||||| |||||||||| |||||||||| ACTCACTATC CTCTTTTGGG GTTTTCTTGC CTGTGTTCTT TTTCCCCAAA AGACTGATTA 514 CTTTTTCTGT TGAAC 130399 |||||| ||| ||||| CTTTTTTTGT TGAAC 529 hqPGS_C10HBa0111D09.1-_SGN-E243970+ (130710 130399) ******************************************************************************** EST sequence 5 -strand 715 n (File: SGN-E578194-) 1 AGTTTCAAGT CTACTCCGAC GCCAAGTTCC TGACAGATAA AGGAGTGATG ACTCGACCAC 61 TCACTTTGGA GAGGGGGGGA CTTACAAGGA GTCTCCCGAC AATGCCTGAG ATTTACAACC 121 TCTTCACCAG GCATCTCTTG GAGTTGACAG CACGTCCATT GGGACGATAC AGCGAAGAAA 181 TGGTCCGAGA GTTCTACGCA TCCTACGTAG CGACTCTTCG ATCACAGATC GATAGGCAGG 241 ATGCCCCCGC TAAAAAGGCC CCGCTGGAGC AGGTTTGAGT CCGGGGCGTA CAGGTTGACA 301 TTTCCCTGCC AGCCATCCGC CGGTTTCTAT ACAACCAGAG TGATGAAGCA ACTCGGACCC 361 CCCTCACTAC CGAGTTTGAT TACTGCTGGC AGATATATAA GGATGGCAAG TTCTTGCGCG 421 AGCCATCACT GAGAGAGACC ACGAAGAGGT TAATGGCCCT GCACCTGTCA GTAGATGGAG 481 AGGGTGCCGA TTGGGTGACT GATCCAAAGG GGGCCATCAA GAAGGCCAAC CTCACGTTCA 541 CGGCAAAGTT CTTGTGGCTT CTTGTCCGTC ACTGCCTTTC CCCCACAACT GCTGATAATA 601 TTGTTTCCTG GGATCGAGCA GTGTCGATGG CGGCGATGAT ATCCGGATTC GAGGTGGACT 661 TTGTATGTCT TCTCCAGGCA GTCATGCACG TGAAGACATT CAAGGTCACT ACTAC Predicted gene structure (within gDNA segment 134534 to 130478): Exon 1 132277 131564 ( 714 n); cDNA 1 715 ( 715 n); score: 0.865 MATCH C10HBa0111D09.1- SGN-E578194- 0.865 714 0.999 C PGS_C10HBa0111D09.1-_SGN-E578194- (132277 131564) Alignment (genomic DNA sequence = upper lines): AGTTTCAAGT CTACTCCGAT GCCAAGTTTC TGACTGATAA AGGTGTGATG ACTCAAACAC 132218 |||||||||| ||||||||| |||||||| | |||| ||||| ||| |||||| |||| | ||| AGTTTCAAGT CTACTCCGAC GCCAAGTTCC TGACAGATAA AGGAGTGATG ACTCGACCAC 60 TTACCTTGGA GCGGCGGGTA CTTACAGGGA GTCTCCCAAC GATGCCGGAG ATCCACAACC 132158 | || ||||| | || ||| | |||||| ||| ||||||| || ||||| ||| || |||||| TCACTTTGGA GAGGGGGGGA CTTACAAGGA GTCTCCCGAC AATGCCTGAG ATTTACAACC 120 TCTTCACCAG GCATCGCTTA GAGTGGAAAG CATGCCTGTT GGGATGATAC AGTGAGGAAA 132098 |||||||||| ||||| ||| |||| || || || | | || |||| ||||| || || |||| TCTTCACCAG GCATCTCTTG GAGTTGACAG CACGTCCATT GGGACGATAC AGCGAAGAAA 180 TGATCCGAGA GTTCTACGCA TCCTACGTAG CGACTCTCCG ATCACAGATC GATAGGCGGG 132038 || ||||||| |||||||||| |||||||||| ||||||| || |||||||||| ||||||| || TGGTCCGAGA GTTCTACGCA TCCTACGTAG CGACTCTTCG ATCACAGATC GATAGGCAGG 240 CTGCTCCCGT TAAATAGGCC CCACTGGAGC AGGTTCGAGT CTGGGGTGTG CAGGTTGACA 131978 ||| |||| |||| ||||| || ||||||| ||||| |||| | |||| || |||||||||| ATGCCCCCGC TAAAAAGGCC CCGCTGGAGC AGGTTTGAGT CCGGGGCGTA CAGGTTGACA 300 TTTCCCTGCC AGCCATCCGC CGGTTTCTAT ACGGTGACAG TGCAGATGCT ACTCGAACCC 131918 |||||||||| |||||||||| |||||||||| || | || || || || ||||| |||| TTTCCCTGCC AGCCATCCGC CGGTTTCTAT ACAACCAGAG TGATGAAGCA ACTCGGACCC 360 CTATCACTGC CGAGTTTGAC TACCGCTGTC AGATAGTAAA GGATGGACAG TTCTTGC-TG 131859 | ||||| | ||||||||| ||| |||| | ||||| || |||||| || ||||||| | CCCTCACTAC CGAGTTTGAT TACTGCTGGC AGATATATAA GGATGGCAAG TTCTTGCGCG 420 AGACAGCACT GGGAGAGACC ACCAAGAGGT GGATGGCCTT GCACCTGTCA GTAGATGGAG 131799 || || |||| | |||||||| || ||||||| |||||| | |||||||||| |||||||||| AGCCATCACT GAGAGAGACC ACGAAGAGGT TAATGGCCCT GCACCTGTCA GTAGATGGAG 480 AGGGTGCCGA TTGGGTCACT GAGCCGAAGG GGGCCATCAA GAAGGCCAAC CTCAGGTTCA 131739 |||||||||| |||||| ||| || || |||| |||||||||| |||||||||| |||| ||||| AGGGTGCCGA TTGGGTGACT GATCCAAAGG GGGCCATCAA GAAGGCCAAC CTCACGTTCA 540 CAGCAAAGTT CTTGTGGCTG CTCATCCGTC ACTACCTTTC CCCCACAGCT GCTGATAACA 131679 | |||||||| ||||||||| || |||||| ||| |||||| ||||||| || |||||||| | CGGCAAAGTT CTTGTGGCTT CTTGTCCGTC ACTGCCTTTC CCCCACAACT GCTGATAATA 600 TCGTTACCTG GGATCGAGCA GTGTTGATGG CAGCGATGTT AGCCGGATTC GAGGTGGACT 131619 | ||| |||| |||||||||| |||| ||||| | |||||| | | |||||||| |||||||||| TTGTTTCCTG GGATCGAGCA GTGTCGATGG CGGCGATGAT ATCCGGATTC GAGGTGGACT 660 TCGCATGGCT TCACCAGGCA ATCATGCACG AGAGGGCATT CAAGGTCACT ACTAC 131564 | | ||| || || ||||||| ||||||||| || | |||| |||||||||| ||||| TTGTATGTCT TCTCCAGGCA GTCATGCACG TGAAGACATT CAAGGTCACT ACTAC 715 hqPGS_C10HBa0111D09.1-_SGN-E578194- (132277 131564) ******************************************************************************** EST sequence 37 +strand 684 n (File: SGN-E350443+) 1 AAATGTAGGT CCAAAACATT ACAAGTTTGA TGTGGGTTCA TCAGGGATGC ATAGGGTACC 61 CTCAGTTTTG TCACTGTTAT TCAGAACGAG ACCCCGATGA CGGACCGTCG TACCCACTAT 121 GGACCGTTGT AGGGTCCATT CGAAAATCCC TAGCACCTTG TCCCAACGGA CACATGGTGA 181 CGGACCGTCG TCTTCACGAC GGTCCGTCCC GCACAACTAA TCCGGTTGTA AGAGACCCTG 241 TTTCTAAGGG TCTCTCATTT TTTCTAAGTG TCCTTCAACG AATATATGTG ACAGACCGTT 301 ATACCCACGA TGTTCCGTCC TGCACGACCG TCATGACGGT CAGAGACCCC TCTCCTAAGG 361 GTCTCCATAT TTTTTTAAGT GTCCTACGAC GGACACCTAC GACGGACCGT CGTACCTGTG 421 ACGGTCCGTC CTGCACATAC CGTTATGCTA GTCAGAGACT CTCCTTTAGG GTTCTCTATA 481 TATAAATAGT CTAAGTAAAA CACGACGGAC CTTATGACGG TCCGTCATAG TCACGACGAG 541 CCATCACCAG GCCCGTCGTG TGTCACTGTT TCTATAGTAA TGACCTACTA TTTCCAGTGT 601 TTTGTTCAGT ATGGTTTTGC TTGTCTTGTT TGCCACTACC CGTACTAATA TTGATCCTTT 661 ACAAGTACTG TTTACTATGG CACC Predicted gene structure (within gDNA segment 134811 to 131889): Exon 1 133507 133333 ( 175 n); cDNA 3 176 ( 174 n); score: 0.874 Intron 1 133332 133222 ( 111 n); Pd: 0.000 (s: 0.78), Pa: 0.000 (s: 0.82) Exon 2 133221 132715 ( 507 n); cDNA 177 684 ( 508 n); score: 0.866 MATCH C10HBa0111D09.1- SGN-E350443+ 0.868 682 0.997 C PGS_C10HBa0111D09.1-_SGN-E350443+ (133507 133333,133221 132715) Alignment (genomic DNA sequence = upper lines): ATGTAGGTCC AAAACACTAC AAGGTTGATG TGGGTTCATT GGGGATGCTT CGGGTACCCT 133448 |||||||||| |||||| ||| ||| |||||| ||||||||| ||||||| | ||||||||| ATGTAGGTCC AAAACATTAC AAGTTTGATG TGGGTTCATC AGGGATGCAT AGGGTACCCT 62 TAGTTTTGTC ACTGTCATTC AGAACGAGAC CCCGATGACG GACCGTCGTA CCCACGACAG 133388 ||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| ||||| | | CAGTTTTGTC ACTGTTATTC AGAACGAGAC CCCGATGACG GACCGTCGTA CCCACTATGG 122 ACCGTCATAG AGTCCATCAC ATAAGCCCTA GCACCCCTGT CCCAAAGGAC ACATGTGAAG 133328 ||||| ||| |||||| | || ||||| ||| || ||| ||||| |||| ||||| ACCGTTGTAG GGTCCATTCG AAAATCCCTA GCA-CCTTGT CCCAACGGAC ACATG..... 176 GATCGTCGTA CTTACGACGG TCCGTCCTGC ACAACCGTCA TGCTAGACAG AGACCCTATT 133268 .......... .......... .......... .......... .......... .......... 176 TCTAAGGGTC TCTCATTTTT TCCCAAGTGT CCTTCAACGG ACACATGTGA CGGACCATCG 133208 |||| |||||| ||| .......... .......... .......... .......... ......GTGA CGGACCGTCG 190 TCTTCACAAC GGTCCATCCT ACACAACCGT TCTGGTTGTC AGAGACCCTG TTTCTAAGGG 133148 ||||||| || ||||| ||| |||||| || |||||| |||||||||| |||||||||| TCTTCACGAC GGTCCGTCCC GCACAACTAA TCCGGTTGTA AGAGACCCTG TTTCTAAGGG 250 TCTCTCATTT TTTTCCAAGT GTCCTTCAAT GGACACATGT GACGGACCGT CGTACCCACG 133088 ||||||| || ||||| |||| ||||||||| | | | |||| ||| |||||| |||||||| TCTCTCA-TT TTTTCTAAGT GTCCTTCAAC GAATATATGT GACAGACCGT TATACCCACG 309 ACAGACCGTC CTGCATGACC GTCATAACGG TCAGAGAGCC CTCTCCTAAG GGTCTCCATT 133028 | ||||| ||||| |||| ||||| |||| ||||||| || |||||||||| ||||||||| ATGTTCCGTC CTGCACGACC GTCATGACGG TCAGAGACCC CTCTCCTAAG GGTCTCCATA 369 TTTTCTCAAG TGTCCTACGA CGGACATATA CGACGGATCG TCGTACCTGT GATGGTTCGT 132968 |||| | ||| |||||||||| |||||| || ||||||| || |||||||||| || ||| ||| TTTTTTTAAG TGTCCTACGA CGGACACCTA CGACGGACCG TCGTACCTGT GACGGTCCGT 429 CCTGCACATA CCATCATTCT AGTCAAAGAC TCTCCTTCAG GGTTCTCTAT ATAT--ACAG 132910 |||||||||| || | || || ||||| |||| ||||||| || |||||||||| |||| | || CCTGCACATA CCGTTATGCT AGTCAGAGAC TCTCCTTTAG GGTTCTCTAT ATATAAATAG 489 TCTAAGTAAA ACACGACGGA CCTCACGACG GTCCGTCATA GTCACGACGA GCCGTCACCT 132850 |||||||||| |||||||||| ||| | |||| |||||||||| |||||||||| ||| ||||| TCTAAGTAAA ACACGACGGA CCTTATGACG GTCCGTCATA GTCACGACGA GCCATCACCA 549 GGCCCGTCGT GTGTCACTGC TTCTACAGCA ATGACATACT ATTTTTAATG TTTTATTTTT 132790 |||||||||| ||||||||| ||||| || | ||||| |||| |||| | || |||| || GGCCCGTCGT GTGTCACTGT TTCTATAGTA ATGACCTACT ATTTCCAGTG TTTTGTTCAG 609 TATGGTTTCA CTTGTCTTGT TTGCCACTAA TCGTACTAAT ATTGATCCTT TGCAAGTACT 132730 |||||||| |||||||||| ||||||||| ||||||||| |||||||||| | |||||||| TATGGTTTTG CTTGTCTTGT TTGCCACTAC CCGTACTAAT ATTGATCCTT TACAAGTACT 669 ATCTACTATG GTACC 132715 | ||||||| | ||| GTTTACTATG GCACC 684 hqPGS_C10HBa0111D09.1-_SGN-E350443+ (133507 133333,133221 132715) ******************************************************************************** EST sequence 110 +strand 553 n (File: SGN-E356743+) 1 TAGTTTCCTA GGTAGTTGGG ATAGACAAAT GTAGGTCCAA AACACTACAA GTTTGATGTG 61 GGTTCATCGG GGATGCATAG GGTACCCCAG TTCTGTCATT GTTATTCAGA ATGAGACCCC 121 GATGACGGAC CGTCGTACCC ACGACGGACC GTCATAGGGT CCATTCCAAA AGCCCTAGCA 181 CCCTATCCCA ACAGACACAT GTGATGGACC GTCGTCTTCA CGATGGTCCG TCCTGCACAA 241 CCGTTTCGGT TGTCAGAGAC CCTGTTTCTA AAGGTATCTC ATTTTTTCCT AAGTGTTCCC 301 CAACGGACAC ATCTGCACAA CCGTTCTGGT TATTAGAGAC CCTATTTCTA AGGGTCTTTC 361 ATTTTATCCC AAGTGTTTCC CAACTGACAC ATGTGAAGGA CTGTCGTCTT CATGACGGTC 421 CATCCTACAC AACCGTTCTG GTTGTTAGAG ACCCTGTTTC TAAGGGTCTC TCACTCTTTC 481 TAAGTGTCCT TCAACGGACA CATGTGACGG ACCGTCATAC CCACAACGGT CTATCCTGCA 541 CGACTGTCAT GAC Predicted gene structure (within gDNA segment 134135 to 131731): Exon 1 133535 133222 ( 314 n); cDNA 1 312 ( 312 n); score: 0.873 Intron 1 133221 133190 ( 32 n); Pd: 0.000 (s: 0.86), Pa: 0.000 (s: 0.90) Exon 2 133189 132986 ( 204 n); cDNA 313 516 ( 204 n); score: 0.762 MATCH C10HBa0111D09.1- SGN-E356743+ 0.829 518 0.937 C PGS_C10HBa0111D09.1-_SGN-E356743+ (133535 133222,133189 132986) Alignment (genomic DNA sequence = upper lines): TAGTTTCCTA GGTAGTTGGG TTAGACACAT GTAGGTCCAA AACACTACAA GGTTGATGTG 133476 |||||||||| |||||||||| |||||| || |||||||||| |||||||||| | |||||||| TAGTTTCCTA GGTAGTTGGG ATAGACAAAT GTAGGTCCAA AACACTACAA GTTTGATGTG 60 GGTTCATTGG GGATGCTTCG GGTACCCTTA GTTTTGTCAC TGTCATTCAG AACGAGACCC 133416 ||||||| || |||||| | | ||||||| | ||| ||||| ||| |||||| || ||||||| GGTTCATCGG GGATGCATAG GGTACCC-CA GTTCTGTCAT TGTTATTCAG AATGAGACCC 119 CGATGACGGA CCGTCGTACC CACGACAGAC CGTCATAGAG TCCATCACAT AAGCCCTAGC 133356 |||||||||| |||||||||| |||||| ||| |||||||| | ||||| || |||||||||| CGATGACGGA CCGTCGTACC CACGACGGAC CGTCATAGGG TCCATTCCAA AAGCCCTAGC 179 ACCCCTGTCC CAAAGGACAC ATGTGAAGGA TCGTCGTACT TACGACGGTC CGTCCTGCAC 133296 | |||| ||| ||| ||||| |||||| ||| |||||| | |||| |||| |||||||||| A-CCCTATCC CAACAGACAC ATGTGATGGA CCGTCGTCTT CACGATGGTC CGTCCTGCAC 238 AACCGTCATG CTAGACAGAG ACCCTATTTC TAAGGGTCTC TCATTTTTTC CCAAGTGTCC 133236 |||||| | | | ||||| ||||| |||| ||| ||| || |||||||||| | |||||| | AACCGTTTCG GTTGTCAGAG ACCCTGTTTC TAAAGGTATC TCATTTTTTC CTAAGTGTTC 298 TTCAACGGAC ACATGTGACG GACCATCGTC TTCACAACGG TCCATCCTAC ACAACCGTTC 133176 |||||||| |||| || | |||||||||| CCCAACGGAC ACAT...... .......... .......... ......CTGC ACAACCGTTC 326 TGGTTGTCAG AGACCCTGTT TCTAAGGGTC TCTCATTTTT TTCCAAGTGT CCTTCAATGG 133116 ||||| | || ||||||| || |||||||||| | ||||||| | |||||||| ||| | TGGTTATTAG AGACCCTATT TCTAAGGGTC TTTCATTTTA TCCCAAGTGT TTCCCAACTG 386 ACACATGTGA CGGACCGTCG TACCCACGAC AGACCGTCCT GCATGACCGT CATAACGGTC 133056 |||||||||| |||| |||| | || ||| | || |||| || ||||| | || ACACATGTGA AGGACTGTCG TCTTCATGAC GGTCCATCCT ACACAACCGT TCTGGTTGTT 446 AGAGAGCCCT CTCCTAAGGG TCTC-CATTT TTTCTCAAGT GTCCTACGAC GGACATATAC 132997 ||||| || | ||||||| |||| || | ||||| |||| ||||| | || ||||| || AGAGACCCTG TTTCTAAGGG TCTCTCACTC TTTCT-AAGT GTCCTTCAAC GGACACATGT 505 GACGGATCGT C 132986 |||||| ||| | GACGGACCGT C 516 hqPGS_C10HBa0111D09.1-_SGN-E356743+ (133535 133222,133189 132986) ******************************************************************************** EST sequence 45 +strand 594 n (File: SGN-E350708+) 1 GGGGATTTAG TGCTTCTATT CAATTCCAGA TTGCGCTTGT TTCCAGGCAA ACTCAAGTCC 61 AAATGGACTG GTCCTTACAC GGTTACCCAA CTATTCCCTC ATGGAGCAGT TGAGTTGGAA 121 ACGAAGGAGG GTGTGCGGTT CAAGGTGAAT GGACAGCGCA TAAAAATCTA TCTCGGACAT 181 GCTGAATCGG CGAATGAAGT GATCGAGGCA TACCATCTTG ATGAAGTCTG AGTAATCAAG 241 TGGCCCCAGT CGTGCCGCGA CATTAAATCA GGCGCTTGTT GGGAGGCAAC CCAATACTTA 301 TCGTCTTTTT AATAATGGTA GCATTTTTTT CTATAAATGG GTTTTAAATT TGCAGGCACA 361 TCACCAAGAA ATTCTGCAGA AAACTACTCC GCAGTAGCCA CTGACGGATA CAACAACGGA 421 CCGTCGTATG CATCCGTCAC ACCAGGTATG TATTTCTGTC ATTTTTGAAA TTAGGGCGCA 481 TACGACGGAA CCTACGATGG GGCGTCGCAA GTGCGATGGA CCGTCGTCGG GGAACCGTTG 541 CGCGATTAAT GAAATCTNAC CGACCCACCC GGCTGGACCT TTTCAAATCT GACC Predicted gene structure (within gDNA segment 136969 to 131280): Exon 1 134533 133922 ( 612 n); cDNA 1 592 ( 592 n); score: 0.783 MATCH C10HBa0111D09.1- SGN-E350708+ 0.783 612 1.030 C PGS_C10HBa0111D09.1-_SGN-E350708+ (134533 133922) Alignment (genomic DNA sequence = upper lines): GGGGATTTCG TGCTTGTAGA CAGTTCTGGG GTGCCTTGTT TTCCAGGCAA GCTCAGGTCT 134474 |||||||| | ||||| || || ||| | ||| | | |||||||||| |||| ||| GGGGATTTAG TGCTTCTATT CAATTCCAGA TTGCGCTTGT TTCCAGGCAA ACTCAAGTCC 60 AAATAGACTG GCCCCTACTT GATTACCCAA GTATTCCCTC ATGGAGCAGT TGAGTAAAAC 134414 |||| ||||| | || ||| | |||||||| ||||||||| |||||||||| ||||| | AAATGGACTG GTCCTTACAC GGTTACCCAA CTATTCCCTC ATGGAGCAGT TGAGTTGGAA 120 GCCAAGGAGG GAGTGTGGTT TAAGTGGAAT AGAGATAGAA TAAAACTCTA TTTTGGACAT 134354 | ||||||| | ||| |||| ||| |||| || | | | ||||| |||| | | |||||| ACGAAGGAGG GTGTGCGGTT CAAGGTGAAT GGACAGCGCA TAAAAATCTA TCTCGGACAT 180 AAAGCATCGG GGAATAAAGT TATAGAGGCA TACCATCTTG ATGAAGTCTG AGTAATCAAG 134294 | ||||| |||| |||| || |||||| |||||||||| |||||||||| |||||||||| GCTGAATCGG CGAATGAAGT GATCGAGGCA TACCATCTTG ATGAAGTCTG AGTAATCAAG 240 GGTTCTCAGT CGTGCCGCGG CAATAAATCA GGCGCTTCTT GGGAGGCAAC CCAATACTTA 134234 | | |||| ||||||||| || ||||||| ||||||| || |||||||||| |||||||||| TGGCCCCAGT CGTGCCGCGA CATTAAATCA GGCGCTTGTT GGGAGGCAAC CCAATACTTA 300 TAGTTTTTTT AGTAATGGTA GCA--TTTTT CTACTAATAG GTTTTAAATT TGCAGGCACA 134176 | || ||||| | |||||||| ||| ||||| ||| ||| | |||||||||| |||||||||| TCGTCTTTTT AATAATGGTA GCATTTTTTT CTATAAATGG GTTTTAAATT TGCAGGCACA 360 TCACCAGGAA TTTCTGCAGA AAATTACTCT GCAGCAGTCA CTGACGGACA TATCGACGGA 134116 |||||| ||| ||||||||| ||| ||||| |||| || || ||||||| | || | | | TCACCAAGAA ATTCTGCAGA AAACTACTCC GCAGTAGCCA CTGACGG--A TA-C-A---A 413 CCGTCGCGCT TGCGACGGAC CGTCGTATGC ATCCGTCGTA CCAGGTACGT TTTTCTGTTA 134056 | |||||| |||||||||| ||||||| | ||||||| || ||||||| | ---------- --CAACGGAC CGTCGTATGC ATCCGTCACA CCAGGTATGT ATTTCTGTCA 461 -TTTTGAATC TAGGGAAGAC GTGACGGAAC AAACGACGGT TCGTCACAAC TGCGATGGAC 133997 ||||||| ||||| | |||||||| |||| || |||| ||| |||||||||| TTTTTGAAAT TAGGGCGCAT ACGACGGAAC CTACGATGGG GCGTCGCAAG TGCGATGGAC 521 CGTCGTTGGG GAACCGTCGC GTGATTAGTG AAGTATACCC GACTCGACCC GGCGGAACCC 133937 |||||| ||| ||||||| || | ||||| || || | | || ||| | |||| ||| | | || CGTCGTCGGG GAACCGTTGC GCGATTAATG AAATCTNACC GAC-CCACCC GGCTGGA-CC 579 TTTTTCTAAA TCAGA 133922 ||||| ||| || || -TTTTC-AAA TCTGA 592 hqPGS_C10HBa0111D09.1-_SGN-E350708+ (134533 133922) ******************************************************************************** EST sequence 26 +strand 823 n (File: SGN-E548861+) 1 CCCTAGTGAA CCTTCCTTGG TAGGGTAAAT GTGATTGGGT TATGAACTTG TTATGGAACC 61 CTTTTATGTG AACCTAATGT ATGAATTACT CTATAAGAAC GAAGCCTACC ACCGAGTGAG 121 TATGGTAAGG TAAAGTAGTT CTAGTTAACA AAGAGACTAG ATTACGAAGC ATGTTCTTCA 181 TATTCCTTAA CCATGTGCCT ACATGGGATG TGTCCAAGTT CTACCATTGG CAAGTAGAAT 241 AACCTCATCG CAGTAGTATA GAACTCCAGA TTCCATGGCT AGCTATCATG GTCTATGTCG 301 GTAATTGCGT ATTCTCATCA TATTTAATAC CTATAAGCAT TAGAGGAGTT TATGGAGTTT 361 AGGTGGCTGT ATGGGACACT ATCTAAACAT TGCCCAATAG ACTTTGAAGG TGTTATGTGG 421 AGTTCCTAGG TCTTGTCCAA GACCATTATT TGAATGTCCT TATGTGATAT ATGAGTTTTA 481 ATGAACTAAT AACTTATGTT ATGGAGAGTA TAAAAGGAAT AAATACCTAT CTAGAATAGT 541 TAAGGGTTGT CTAGTTAAGT TGTGAAAGGG GCATAGGAAT GGTCACTTTA TATCTTACCT 601 AGATGAGTCT TAAGAATGAC TCTAATTAGG GAAGATGTTG ATTATGTGGA CATGATCCGA 661 ACTTGGGAAG TCATAAGGAT TATTTAGGTA GTCTTGAAGA GGTCAATCAT AGACTTTATC 721 TTCTTGACCT ACTTAAGTAA GTCTTTTGAT AGCCTTTGAT GAGGAAAGGT CATAGTGTCT 781 ATATGTTGAT ATGTTTGATG CCTTGAAGTG TGTATGTGAC TCA Predicted gene structure (within gDNA segment 136274 to 145137): Exon 1 138450 139282 ( 833 n); cDNA 1 823 ( 823 n); score: 0.757 MATCH C10HBa0111D09.1+ SGN-E548861+ 0.757 833 1.012 C PGS_C10HBa0111D09.1+_SGN-E548861+ (138450 139282) Alignment (genomic DNA sequence = upper lines): CCCTACTGGA CCTTTATTTG GTAGGGTAAA TGTAACTGAG TTATGAACTT TATATGGAAC 138509 ||||| || | || || ||| |||||||||| ||| | || | |||||||||| |||||||| CCCTAGTGAA CC-TTCCTTG GTAGGGTAAA TGTGATTGGG TTATGAACTT GTTATGGAAC 59 CCCTTTGTAT GAACCTTA-A TGTGAA-TAC TCTATGAAAA CAAAGGCTAG AACCGAGTGA 138567 || ||| | | |||||| | | |||| ||| ||||| | || | ||| ||| ||||||||| CCTTTTATGT GAACCTAATG TATGAATTAC TCTATAAGAA CGAAGCCTAC CACCGAGTGA 119 GTATGGTAAG G-GAAGTAGT TATAGTTAAA GTATGTGGCT AGAATACAAA GTAAGCCCTT 138626 |||||||||| | ||||||| | ||||| || | | | || ||| ||| || | | | ||| GTATGGTAAG GTAAAGTAGT TCTAGTT-AA CAAAGAGACT AGATTACGAA GCATGTTCTT 178 CATATTCCTT AACTATGTGC CTACATGGGA TATGTCCAAG TTCTACCATT GGCAAGTAGA 138686 |||||||||| ||| |||||| |||||||||| | |||||||| |||||||||| |||||||||| CATATTCCTT AACCATGTGC CTACATGGGA TGTGTCCAAG TTCTACCATT GGCAAGTAGA 238 ACAACCTCAT CGGAGTAGGA TAGAACTCTG GATTCCATGT TTTTCTACCA TGGCCTATGT 138746 | |||||||| || ||||| | |||||||| ||||||||| | ||| || ||| |||||| ATAACCTCAT CGCAGTAGTA TAGAACTCCA GATTCCATGG CTAGCTATCA TGGTCTATGT 298 AGGTTATTGT CTATTCTCAT CATGTGGGAT ACCCATTAGC ATTATAGAAT TTCTATAAAA 138806 ||| |||| ||||||||| ||| | || ||| || ||| |||| || | || ||| | CGGTAATTGC GTATTCTCAT CATATTTAAT ACCTATAAGC ATTAGAGGAG TT-TATGGAG 357 TTTAGGTGGT GGTATGGGAC ACTATCTAGA CATTGCACAA TTGGCATTGA AGATATT-GG 138865 ||||||||| ||||||||| |||||||| | |||||| ||| | | | |||| || | || | TTTAGGTGGC TGTATGGGAC ACTATCTAAA CATTGCCCAA TAGACTTTGA AGGTGTTATG 417 TGAGAGTCCC TAGGTATTCT CCAAGACCAT TACTTGAATG TCCTTTGTGT GATGAATGTC 138925 || |||| || ||||| || | |||||||||| || ||||||| ||| || ||| ||| ||| TG-GAGTTCC TAGGTCTTGT CCAAGACCAT TATTTGAATG TCC-TTATGT GATATATGAG 475 TCTTAAGTGA ACTATTGAAC TAATGACTTA TGTTATGAAG TATGTAAATG AATGAGTACC 138985 | |||| ||| |||| | ||| | ||| ||| || | | || ||| ||| | ||| | |||| TTTTAA-TGA ACTAAT-AAC TTATG--TTA TG-GA-G-AG TAT-AAAAGG AATAAATACC 527 TAATCTGGAG TGACTTAAGG ATTCCTTATT TAAAGTGTGC AGAGGGCAAT AAGGGATGAT 139045 | |||| || | | |||||| || || | ||| |||| | |||| || ||| ||| | T-ATCTAGAA T-AGTTAAGG GTTGTCTAGT TAAGTTGTG- AAAGGGGCAT -AGGAATGGT 583 CTCTTCATGT CTTATCTATG GAATTCTTGA AAATGACCCT AGTTAGGACA GTTTGTTGAT 139105 | ||| || | |||| ||| | |||| | |||||| || | ||||| | | ||||||| CACTTTATAT CTTACCTAGA TGAGTCTTAA GAATGACTCT AATTAGGGAA G-ATGTTGAT 642 TCTTTAAATG TGATGTAAAC TTAGGATGTC TTAAATATTA TTTAGGTAAC CTTGAAGAGG 139165 | | | | |||| ||| || ||| ||| ||| |||| |||||||| |||||||||| TATGTGGACA TGATCCGAAC TTGGGAAGTC ATAAGGATTA TTTAGGTAGT CTTGAAGAGG 702 -GTGT-ATGT GCATTATCTT CTAGGAGTAC TTAAGTAAGT CTTTTGACAG CCTTGGTAAA 139223 | || | ||||||| || | ||| |||||||||| ||||||| || |||| | | TCAATCATAG ACTTTATCTT CTTGACCTAC TTAAGTAAGT CTTTTGATAG CCTTTGATGA 762 GGAAATGTCA TA-TCT-TGT ATGTT-ATGT GTTTGGTGTA TTGTAAGTGT GTATGTGTCT 139280 ||||| |||| || | | | | ||||| || | ||||| || ||| |||||| ||||||| || GGAAAGGTCA TAGTGTCTAT ATGTTGATAT GTTTGATGCC TTG-AAGTGT GTATGTGACT 821 CA 139282 || CA 823 hqPGS_C10HBa0111D09.1+_SGN-E548861+ (138450 139282) ******************************************************************************** EST sequence 9 +strand 506 n (File: SGN-E303196+) 1 CCTAGTGAAC CTTCCTTGGT AGGGTAAATG TGATTGGGTT ATGAACTTGT TATGGAACCC 61 TTTTATGTGA ACCTAATGTA TGAATTACTC TATAAGAACG AAGCCTACCA CCGAGTGAGT 121 ATGGTAAGGT AAAGTAGTTC TAGTTAACAA AGAGACTAGA TTACGAAGCA TGTTCTTCAT 181 ATTCCTTAAC CATGTGCCTA CATGGGATGT GTCCAAGTTC TACCATTGGC AAGTAGAATA 241 ACCTCATCGC AGTAGTATAG AACTCCAGAT TCCATGGCTA GCTATCATGG TCTATGTCGG 301 TAATTGCGTA TTCTCATCAT ATTTAATACC TATAAGCATT AGAGGAGTTT ATGGAGTTTA 361 GGTGGCTGTA TGGGACACTA TCTAAACATT GCCCAATAGA CTTTGAAGGT GTTATGTGGA 421 GTTCCTAGGT CTTGTCCAAG ACCATTATTT GAATGTCCTT ATGTGATATA TGAGTTTTAA 481 TGAACTAATA ACTTATGTTA TGGAGA Predicted gene structure (within gDNA segment 136284 to 141977): Exon 1 138451 138957 ( 507 n); cDNA 1 502 ( 502 n); score: 0.795 MATCH C10HBa0111D09.1+ SGN-E303196+ 0.795 507 1.002 C PGS_C10HBa0111D09.1+_SGN-E303196+ (138451 138957) Alignment (genomic DNA sequence = upper lines): CCTACTGGAC CTTTATTTGG TAGGGTAAAT GTAACTGAGT TATGAACTTT ATATGGAACC 138510 |||| || || | || |||| |||||||||| || | || || ||||||||| ||||||||| CCTAGTGAAC C-TTCCTTGG TAGGGTAAAT GTGATTGGGT TATGAACTTG TTATGGAACC 59 CCTTTGTATG AACCTTA-AT GTGAA-TACT CTATGAAAAC AAAGGCTAGA ACCGAGTGAG 138568 | ||| | || ||||| | | |||| |||| |||| | ||| ||| ||| |||||||||| CTTTTATGTG AACCTAATGT ATGAATTACT CTATAAGAAC GAAGCCTACC ACCGAGTGAG 119 TATGGTAAGG -GAAGTAGTT ATAGTTAAAG TATGTGGCTA GAATACAAAG TAAGCCCTTC 138627 |||||||||| |||||||| ||||| || | | | ||| || ||| ||| | | |||| TATGGTAAGG TAAAGTAGTT CTAGTT-AAC AAAGAGACTA GATTACGAAG CATGTTCTTC 178 ATATTCCTTA ACTATGTGCC TACATGGGAT ATGTCCAAGT TCTACCATTG GCAAGTAGAA 138687 |||||||||| || ||||||| |||||||||| ||||||||| |||||||||| |||||||||| ATATTCCTTA ACCATGTGCC TACATGGGAT GTGTCCAAGT TCTACCATTG GCAAGTAGAA 238 CAACCTCATC GGAGTAGGAT AGAACTCTGG ATTCCATGTT TTTCTACCAT GGCCTATGTA 138747 ||||||||| | ||||| || ||||||| | |||||||| | ||| ||| || |||||| TAACCTCATC GCAGTAGTAT AGAACTCCAG ATTCCATGGC TAGCTATCAT GGTCTATGTC 298 GGTTATTGTC TATTCTCATC ATGTGGGATA CCCATTAGCA TTATAGAATT TCTATAAAAT 138807 ||| |||| |||||||||| || | ||| || || |||| ||| || | | | ||| | | GGTAATTGCG TATTCTCATC ATATTTAATA CCTATAAGCA TTAGAGGAGT T-TATGGAGT 357 TTAGGTGGTG GTATGGGACA CTATCTAGAC ATTGCACAAT TGGCATTGAA GATATT-GGT 138866 |||||||| |||||||||| ||||||| || ||||| |||| | | ||||| | | || || TTAGGTGGCT GTATGGGACA CTATCTAAAC ATTGCCCAAT AGACTTTGAA GGTGTTATGT 417 GAGAGTCCCT AGGTATTCTC CAAGACCATT ACTTGAATGT CCTTTGTGTG ATGAATGTCT 138926 | |||| ||| |||| || || |||||||||| | |||||||| || || |||| || ||| | G-GAGTTCCT AGGTCTTGTC CAAGACCATT ATTTGAATGT CC-TTATGTG ATATATGAGT 475 CTTAAGTGAA CTATTGAACT AATGACTTAT G 138957 |||| |||| ||| | |||| ||| |||| | TTTAA-TGAA CTAAT-AACT TATG--TTAT G 502 hqPGS_C10HBa0111D09.1+_SGN-E303196+ (138451 138957) Total number of EST alignments reported: 118 ________________________________________________________________________________ Predicted gene locations (21) in segment 1 to 148613: PGL 1 (- strand): 6250 5893 AGS-1 (6250 6234,6109 5893) SCR (e 1.000 d 0.696 a 1.000,e 0.991) Exon 1 6250 6234 ( 17 n); score: 1.000 Intron 1 6233 6110 ( 124 n); Pd: 0.696 Pa: 1.000 Exon 2 6109 5893 ( 217 n); score: 0.991 PGS (6250 6234,6109 5893) SGN-E270415+ 3-phase translation of AGS-1 (-strand): . . : . . . . 6250 TCTGAAGGGGGATCATT : GTATGTACCTACTACCAAAAAGGAGCTTGTGCTTATGGAAGCA S E G G S L : Y V P T T K K E L V L M E A L K G D H : C M Y L L P K R S L C L W K Q - R G I I : V C T Y Y Q K G A C A Y G S . . . . . . 6066 GGTGTAGATATGATCATGTTAAACTGTCTCGATCACAACCTTCAGCTCAGTCTTCAGCAC G V D M I M L N C L D H N L Q L S L Q H V - I - S C - T V S I T T F S S V F S T R C R Y D H V K L S R S Q P S A Q S S A . . . . . . 6006 AACCTCAACAATGTCTGCTTTCAAGTTCTACGCCTATCAATGTGTCTCCTGGAATGGGTG N L N N V C F Q V L R L S M C L L E W V T S T M S A F K F Y A Y Q C V S W N G C Q P Q Q C L L S S S T P I N V S P G M G . . . . . . 5946 CACATAATGCAGATGTTCTGCCAGGCATTTGTACTGAGTATTTAGCTTCAAGCA H I M Q M F C Q A F V L S I - L Q A T - C R C S A R H L Y - V F S F K A H N A D V L P G I C T E Y L A S S Maximal non-overlapping open reading frames (>= 64 codons): >C10HBa0111D09.1-_PGL-1_AGS-1_PPS_1 (6245 6234,6109 5894) (frame '0'; 228 bp, 76 residues) 1 RGIIVCTYYQ KGACAYGSRC RYDHVKLSRS QPSAQSSAQP QQCLLSSSTP INVSPGMGAH 61 NADVLPGICT EYLASS >C10HBa0111D09.1-_PGL-1_AGS-1_PPS_2 (6250 6234,6109 5902) (frame '1'; 222 bp, 74 residues) 1 SEGGSLYVPT TKKELVLMEA GVDMIMLNCL DHNLQLSLQH NLNNVCFQVL RLSMCLLEWV 61 HIMQMFCQAF VLSI- PGL 2 (+ strand): 20889 21413 AGS-1 (20889 21413) SCR (e 0.833) Exon 1 20889 21413 ( 525 n); score: 0.833 PGS (20889 21413) SGN-E243174+ 3-phase translation of AGS-1 (+strand): . . . . . . 20889 ACTTGAAACCATGATTTACTACAACCCTATCACCAAGGAAAAATATCACAAGAATGAATA T - N H D L L Q P Y H Q G K I S Q E - I L E T M I Y Y N P I T K E K Y H K N E - L K P - F T T T L S P R K N I T R M N . . . . . . 20949 AGAGTCAATCATATCATGATAGAGAGACAACTATTCATGAATCCTTATCAACTCAACAAG R V N H I M I E R Q L F M N P Y Q L N K E S I I S - - R D N Y S - I L I N S T S K S Q S Y H D R E T T I H E S L S T Q Q . . . . . . 21009 TGCAATAACCAAGCAAAGCCTCATAACCTTACTCAATCAAGTATCCTCAAAAAGAAACCA C N N Q A K P H N L T Q S S I L K K K P A I T K Q S L I T L L N Q V S S K R N H V Q - P S K A S - P Y S I K Y P Q K E T . . . . . . 21069 TGACCAATGTCCAACTTTACCTAACATAGCATTTAGGTTTACATTTTATCATATATTAAC - P M S N F T - H S I - V Y I L S Y I N D Q C P T L P N I A F R F T F Y H I L T M T N V Q L Y L T - H L G L H F I I Y - . . . . . . 21129 ATTATGACCCAAGGCATACTCATTAGTAAACTAATTAATATATAATATCAACAATGTGCC I M T Q G I L I S K L I N I - Y Q Q C A L - P K A Y S L V N - L I Y N I N N V P H Y D P R H T H - - T N - Y I I S T M C . . . . . . 21189 ATAGTAATCATATATACATAATATATCATCATAACATAAACATATATAAAAACCTCCTTC I V I I Y T - Y I I I T - T Y I K T S F - - S Y I H N I S S - H K H I - K P P S H S N H I Y I I Y H H N I N I Y K N L L . . . . . . 21249 TAAGACTCCCCTCAAGGCTAACTAGTGAAATGTTTAGGTAGAGCCCCATACCCCTACCTA - D S P Q G - L V K C L G R A P Y P Y L K T P L K A N - - N V - V E P H T P T - L R L P S R L T S E M F R - S P I P L P . . . . . . 21309 GATTAAGCTAGACCCCTTAGGTTATCCAAGTTAGAGTTCAAGTCCTTTAATTCGTTTTAC D - A R P L R L S K L E F K S F N S F Y I K L D P L G Y P S - S S S P L I R F T R L S - T P - V I Q V R V Q V L - F V L . . . . . 21369 CTTTTGGGAACATCTTGCCCTAACCGACATAGACCACATGAGCTA L L G T S C P N R H R P H E L F W E H L A L T D I D H M S P F G N I L P - P T - T T - A Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 21413 TAGCTCATGTGGTCTATGTCGGTTAGGGCAAGATGTTCCCAAAAGGTAAAACGAATTAAA - L M W S M S V R A R C S Q K V K R I K S S C G L C R L G Q D V P K R - N E L K A H V V Y V G - G K M F P K G K T N - . . . . . . 21353 GGACTTGAACTCTAACTTGGATAACCTAAGGGGTCTAGCTTAATCTAGGTAGGGGTATGG G L E L - L G - P K G S S L I - V G V W D L N S N L D N L R G L A - S R - G Y G R T - T L T W I T - G V - L N L G R G M . . . . . . 21293 GGCTCTACCTAAACATTTCACTAGTTAGCCTTGAGGGGAGTCTTAGAAGGAGGTTTTTAT G S T - T F H - L A L R G V L E G G F Y A L P K H F T S - P - G E S - K E V F I G L Y L N I S L V S L E G S L R R R F L . . . . . . 21233 ATATGTTTATGTTATGATGATATATTATGTATATATGATTACTATGGCACATTGTTGATA I C L C Y D D I L C I Y D Y Y G T L L I Y V Y V M M I Y Y V Y M I T M A H C - Y Y M F M L - - Y I M Y I - L L W H I V D . . . . . . 21173 TTATATATTAATTAGTTTACTAATGAGTATGCCTTGGGTCATAATGTTAATATATGATAA L Y I N - F T N E Y A L G H N V N I - - Y I L I S L L M S M P W V I M L I Y D K I I Y - L V Y - - V C L G S - C - Y M I . . . . . . 21113 AATGTAAACCTAAATGCTATGTTAGGTAAAGTTGGACATTGGTCATGGTTTCTTTTTGAG N V N L N A M L G K V G H W S W F L F E M - T - M L C - V K L D I G H G F F L R K C K P K C Y V R - S W T L V M V S F - . . . . . . 21053 GATACTTGATTGAGTAAGGTTATGAGGCTTTGCTTGGTTATTGCACTTGTTGAGTTGATA D T - L S K V M R L C L V I A L V E L I I L D - V R L - G F A W L L H L L S - - G Y L I E - G Y E A L L G Y C T C - V D . . . . . . 20993 AGGATTCATGAATAGTTGTCTCTCTATCATGATATGATTGACTCTTATTCATTCTTGTGA R I H E - L S L Y H D M I D S Y S F L - G F M N S C L S I M I - L T L I H S C D K D S - I V V S L S - Y D - L L F I L V . . . . . 20933 TATTTTTCCTTGGTGATAGGGTTGTAGTAAATCATGGTTTCAAGT Y F S L V I G L - - I M V S S I F P W - - G C S K S W F Q I F F L G D R V V V N H G F K Maximal non-overlapping open reading frames (>= 64 codons): none PGL 3 (- strand): 25822 25197 AGS-1 (25822 25197) SCR (e 0.816) Exon 1 25822 25197 ( 626 n); score: 0.816 PGS (25822 25197) SGN-E349363+ 3-phase translation of AGS-1 (-strand): . . . . . . 25822 GTTGACACTATCGGAGGGTACGAAGGGTTTTGTTGTGTATTGTGACGCATCCCGAGTGGG V D T I G G Y E G F C C V L - R I P S G L T L S E G T K G F V V Y C D A S R V G - H Y R R V R R V L L C I V T H P E W . . . . . . 25762 TTTGCGGTATGTGCTTATGCAACACGGGAAAGTCATAGCCTATGCCTCTAGGAAACTTAA F A V C A Y A T R E S H S L C L - E T - L R Y V L M Q H G K V I A Y A S R K L K V C G M C L C N T G K S - P M P L G N L . . . . . . 25702 GGTACATGAGAGAAACTATCCCACTCATGACCTTGAGTTAGAAGTTGTGGTATTTGCTTT G T - E K L S H S - P - V R S C G I C F V H E R N Y P T H D L E L E V V V F A L R Y M R E T I P L M T L S - K L W Y L L . . . . . . 25642 GAAAATTTGGAGGCATTACTTTTATGGGGTTCATGTGGATGTCTTTACTGATCACAAGAG E N L E A L L L W G S C G C L Y - S Q E K I W R H Y F Y G V H V D V F T D H K S - K F G G I T F M G F M W M S L L I T R . . . . . . 25582 TCTCCAATATATGTTTACCTAGAAAGGAGTTGAATCTCTGACATAGTTGGTGGCTAGAGT S P I Y V Y L E R S - I S D I V G G - S L Q Y M F T - K G V E S L T - L V A R V V S N I C L P R K E L N L - H S W W L E . . . . . . 25522 TGTTGAAAGATTATTATATGAGTGTCCTTTATCACCCCGGCAAGGATAATGTGGTTGCGG C - K I I I - V S F I T P A R I M W L R V E R L L Y E C P L S P R Q G - C G C G L L K D Y Y M S V L Y H P G K D N V V A . . . . . . 25462 ATGCCCTAAGTCGTATGACAATGGGTAGTGTATCCCACCTTGACGAAGACAAGAGAAACC M P - V V - Q W V V Y P T L T K T R E T C P K S Y D N G - C I P P - R R Q E K P D A L S R M T M G S V S H L D E D K R N . . . . . . 25402 TAGCAAGGGAAGTACATAGGTTGGCTAGGTTGGGGGTGAGGTTGAAAAGTTCTCCAGATG - Q G K Y I G W L G W G - G - K V L Q M S K G S T - V G - V G G E V E K F S R W L A R E V H R L A R L G V R L K S S P D . . . . . . 25342 GAGGGGCTATAGTTCATCATAACTCCGAGTCAACTCTAGTGGTTGAGGTGAAGTCCAAAC E G L - F I I T P S Q L - W L R - S P N R G Y S S S - L R V N S S G - G E V Q T G G A I V H H N S E S T L V V E V K S K . . . . . . 25282 AACACCTTGATCTAGCCTTAATGGAGTTGAAAGAATCGGTTCTCGGCAAGTTGAATGAAT N T L I - P - W S - K N R F S A S - M N T P - S S L N G V E R I G S R Q V E - I Q H L D L A L M E L K E S V L G K L N E . . . 25222 CATTATCCTTAGGGGAAGATGATGTG H Y P - G K M M I I L R G R - C S L S L G E D D V Maximal non-overlapping open reading frames (>= 64 codons): >C10HBa0111D09.1-_PGL-3_AGS-1_PPS_1 (25541 25197) (frame '0'; 345 bp, 115 residues) 1 HSWWLELLKD YYMSVLYHPG KDNVVADALS RMTMGSVSHL DEDKRNLARE VHRLARLGVR 61 LKSSPDGGAI VHHNSESTLV VEVKSKQHLD LALMELKESV LGKLNESLSL GEDDV >C10HBa0111D09.1-_PGL-3_AGS-1_PPS_2 (25821 25561) (frame '2'; 258 bp, 86 residues) 1 LTLSEGTKGF VVYCDASRVG LRYVLMQHGK VIAYASRKLK VHERNYPTHD LELEVVVFAL 61 KIWRHYFYGV HVDVFTDHKS LQYMFT- 3-phase translation of AGS-1 (+strand): . . . . . . 25197 CACATCATCTTCCCCTAAGGATAATGATTCATTCAACTTGCCGAGAACCGATTCTTTCAA H I I F P - G - - F I Q L A E N R F F Q T S S S P K D N D S F N L P R T D S F N H H L P L R I M I H S T C R E P I L S . . . . . . 25257 CTCCATTAAGGCTAGATCAAGGTGTTGTTTGGACTTCACCTCAACCACTAGAGTTGACTC L H - G - I K V L F G L H L N H - S - L S I K A R S R C C L D F T S T T R V D S T P L R L D Q G V V W T S P Q P L E L T . . . . . . 25317 GGAGTTATGATGAACTATAGCCCCTCCATCTGGAGAACTTTTCAACCTCACCCCCAACCT G V M M N Y S P S I W R T F Q P H P Q P E L - - T I A P P S G E L F N L T P N L R S Y D E L - P L H L E N F S T S P P T . . . . . . 25377 AGCCAACCTATGTACTTCCCTTGCTAGGTTTCTCTTGTCTTCGTCAAGGTGGGATACACT S Q P M Y F P C - V S L V F V K V G Y T A N L C T S L A R F L L S S S R W D T L - P T Y V L P L L G F S C L R Q G G I H . . . . . . 25437 ACCCATTGTCATACGACTTAGGGCATCCGCAACCACATTATCCTTGCCGGGGTGATAAAG T H C H T T - G I R N H I I L A G V I K P I V I R L R A S A T T L S L P G - - R Y P L S Y D L G H P Q P H Y P C R G D K . . . . . . 25497 GACACTCATATAATAATCTTTCAACAACTCTAGCCACCAACTATGTCAGAGATTCAACTC D T H I I I F Q Q L - P P T M S E I Q L T L I - - S F N N S S H Q L C Q R F N S G H S Y N N L S T T L A T N Y V R D S T . . . . . . 25557 CTTTCTAGGTAAACATATATTGGAGACTCTTGTGATCAGTAAAGACATCCACATGAACCC L S R - T Y I G D S C D Q - R H P H E P F L G K H I L E T L V I S K D I H M N P P F - V N I Y W R L L - S V K T S T - T . . . . . . 25617 CATAAAAGTAATGCCTCCAAATTTTCAAAGCAAATACCACAACTTCTAACTCAAGGTCAT H K S N A S K F S K Q I P Q L L T Q G H I K V M P P N F Q S K Y H N F - L K V M P - K - C L Q I F K A N T T T S N S R S . . . . . . 25677 GAGTGGGATAGTTTCTCTCATGTACCTTAAGTTTCCTAGAGGCATAGGCTATGACTTTCC E W D S F S H V P - V S - R H R L - L S S G I V S L M Y L K F P R G I G Y D F P - V G - F L S C T L S F L E A - A M T F . . . . . . 25737 CGTGTTGCATAAGCACATACCGCAAACCCACTCGGGATGCGTCACAATACACAACAAAAC R V A - A H T A N P L G M R H N T Q Q N V L H K H I P Q T H S G C V T I H N K T P C C I S T Y R K P T R D A S Q Y T T K . . . 25797 CCTTCGTACCCTCCGATAGTGTCAAC P S Y P P I V S L R T L R - C Q P F V P S D S V N Maximal non-overlapping open reading frames (>= 64 codons): none PGL 4 (+ strand): 43717 44252 AGS-1 (43717 44252) SCR (e 0.784) Exon 1 43717 44252 ( 536 n); score: 0.784 PGS (43717 44252) SGN-E319785- 3-phase translation of AGS-1 (+strand): . . . . . . 43717 GAGTGAGTTGTGAAGCAACTACCTATACAATCCCTTCACACACACCTAAGAGATCCTTTT E - V V K Q L P I Q S L H T H L R D P F S E L - S N Y L Y N P F T H T - E I L L V S C E A T T Y T I P S H T P K R S F . . . . . . 43777 GAATACCTAGTAAGATTATTCTCACTTCATACAATAACATATATAAAATATGACATTCTC E Y L V R L F S L H T I T Y I K Y D I L N T - - D Y S H F I Q - H I - N M T F S - I P S K I I L T S Y N N I Y K I - H S . . . . . . 43837 TTCACAAAGGTTATCAAAAGACTTAATTAAGTAATTCAAGAAGAGAACGCCCATATACCC F T K V I K R L N - V I Q E E N A H I P S Q R L S K D L I K - F K K R T P I Y P L H K G Y Q K T - L S N S R R E R P Y T . . . . . . 43897 TCTCCAAGATTACCTAAATAATCTTTATGATGTCCTAAGTTTAGATTATGTCTACTTAAT S P R L P K - S L - C P K F R L C L L N L Q D Y L N N L Y D V L S L D Y V Y L I L S K I T - I I F M M S - V - I M S T - . . . . . . 43957 CCACCAAATTTCGTATCTAGAGTCATTCTTAAGCTTACCTAGAGACATGAAGTGCCCATT P P N F V S R V I L K L T - R H E V P I H Q I S Y L E S F L S L P R D M K C P F S T K F R I - S H S - A Y L E T - S A H . . . . . . 44017 CATATACCTTCTTCGCACCTTAACTAGGCAACCCTTAAACTACTCTAGGTAAGTACTTAT H I P S S H L N - A T L K L L - V S T Y I Y L L R T L T R Q P L N Y S R - V L I S Y T F F A P - L G N P - T T L G K Y L . . . . . . 44077 TCATTTACATGCTTTCTAAATTATGTCCTTATCTTCATTATCTCATTTAAGATTCATTCA S F T C F L N Y V L I F I I S F K I H S H L H A F - I M S L S S L S H L R F I Q F I Y M L S K L C P Y L H Y L I - D S F . . . . . . 44137 ACATATAAGGACCTTCAAGTAATAGTATTGGAGAAGACCTAGGGACTCACTCCACTAACA T Y K D L Q V I V L E K T - G L T P L T H I R T F K - - Y W R R P R D S L H - H N I - G P S S N S I G E D L G T H S T N . . . . . . 44197 TCTTCAAAGCTTATTGTGCAATGTCTAGATAGCATCCTATACCACCACCTAAACTT S S K L I V Q C L D S I L Y H H L N L Q S L L C N V - I A S Y T T T - T I F K A Y C A M S R - H P I P P P K L Maximal non-overlapping open reading frames (>= 64 codons): >C10HBa0111D09.1+_PGL-4_AGS-1_PPS_1 (43871 44068) (frame '2'; 195 bp, 65 residues) 1 FKKRTPIYPL QDYLNNLYDV LSLDYVYLIH QISYLESFLS LPRDMKCPFI YLLRTLTRQP 61 LNYSR- 3-phase translation of AGS-1 (-strand): . . . . . . 44252 AAGTTTAGGTGGTGGTATAGGATGCTATCTAGACATTGCACAATAAGCTTTGAAGATGTT K F R W W Y R M L S R H C T I S F E D V S L G G G I G C Y L D I A Q - A L K M L V - V V V - D A I - T L H N K L - R C . . . . . . 44192 AGTGGAGTGAGTCCCTAGGTCTTCTCCAATACTATTACTTGAAGGTCCTTATATGTTGAA S G V S P - V F S N T I T - R S L Y V E V E - V P R S S P I L L L E G P Y M L N - W S E S L G L L Q Y Y Y L K V L I C - . . . . . . 44132 TGAATCTTAAATGAGATAATGAAGATAAGGACATAATTTAGAAAGCATGTAAATGAATAA - I L N E I M K I R T - F R K H V N E - E S - M R - - R - G H N L E S M - M N K M N L K - D N E D K D I I - K A C K - I . . . . . . 44072 GTACTTACCTAGAGTAGTTTAAGGGTTGCCTAGTTAAGGTGCGAAGAAGGTATATGAATG V L T - S S L R V A - L R C E E G I - M Y L P R V V - G L P S - G A K K V Y E W S T Y L E - F K G C L V K V R R R Y M N . . . . . . 44012 GGCACTTCATGTCTCTAGGTAAGCTTAAGAATGACTCTAGATACGAAATTTGGTGGATTA G T S C L - V S L R M T L D T K F G G L A L H V S R - A - E - L - I R N L V D - G H F M S L G K L K N D S R Y E I W W I . . . . . . 43952 AGTAGACATAATCTAAACTTAGGACATCATAAAGATTATTTAGGTAATCTTGGAGAGGGT S R H N L N L G H H K D Y L G N L G E G V D I I - T - D I I K I I - V I L E R V K - T - S K L R T S - R L F R - S W R G . . . . . . 43892 ATATGGGCGTTCTCTTCTTGAATTACTTAATTAAGTCTTTTGATAACCTTTGTGAAGAGA I W A F S S - I T - L S L L I T F V K R Y G R S L L E L L N - V F - - P L - R E Y M G V L F L N Y L I K S F D N L C E E . . . . . . 43832 ATGTCATATTTTATATATGTTATTGTATGAAGTGAGAATAATCTTACTAGGTATTCAAAA M S Y F I Y V I V - S E N N L T R Y S K C H I L Y M L L Y E V R I I L L G I Q K N V I F Y I C Y C M K - E - S Y - V F K . . . . . . 43772 GGATCTCTTAGGTGTGTGTGAAGGGATTGTATAGGTAGTTGCTTCACAACTCACTC G S L R C V - R D C I G S C F T T H D L L G V C E G I V - V V A S Q L T R I S - V C V K G L Y R - L L H N S L Maximal non-overlapping open reading frames (>= 64 codons): none PGL 5 (+ strand): 75581 76599 AGS-1 (75581 75815,75954 76107,76219 76599) SCR (e 0.719 d 0.000 a 0.000,e 0.802 d 0.000 a 0.000,e 0.801) Exon 1 75581 75815 ( 235 n); score: 0.719 Intron 1 75816 75953 ( 138 n); Pd: 0.000 Pa: 0.000 Exon 2 75954 76107 ( 154 n); score: 0.802 Intron 2 76108 76218 ( 111 n); Pd: 0.000 Pa: 0.000 Exon 3 76219 76599 ( 381 n); score: 0.801 PGS (75581 75815,75954 76107,76219 76599) SGN-E543334- 3-phase translation of AGS-1 (+strand): . . . . . . 75581 AAGTGTGAAGATGGTATAAGAGATGATCTCTTCATGTCTTATCTTTGAAAGTCTTGAAGA K C E D G I R D D L F M S Y L - K S - R S V K M V - E M I S S C L I F E S L E D V - R W Y K R - S L H V L S L K V L K . . . . . . 75641 TGACTATAGTTAGGGAAGATGTTTGGTGTTGTGGACCTAATCTAAGCCTTAGGTAGTCTT - L - L G K M F G V V D L I - A L G S L D Y S - G R C L V L W T - S K P - V V L M T I V R E D V W C C G P N L S L R - S . . . . . . 75701 AAGGACTATTTAGGTTATCTTGAAGAGGTCACAATGGACGTTATGTTCTTGATTTACTAA K D Y L G Y L E E V T M D V M F L I Y - R T I - V I L K R S Q W T L C S - F T K - G L F R L S - R G H N G R Y V L D L L . . . . . . : 75761 ACTAGGTATTTTGATAGCCTTTGGAAGAAGAATGTCATATCATTTATGTGTTAGT : ATGAT T R Y F D S L W K K N V I S F M C - : Y D L G I L I A F G R R M S Y H L C V S : M I N - V F - - P L E E E C H I I Y V L V : - . . . . . . 75959 TATGATACTTGGTAAGTATGTATGTGACTCATTATAACTAATAGTAAGGGTCGTTTAGGC Y D T W - V C M - L I I T N S K G R L G M I L G K Y V C D S L - L I V R V V - A L - Y L V S M Y V T H Y N - - - G S F R . . . . . . 76019 ACATCTAGAAGGGTTTACGGGCGGTCTCTCTTTGCGTGATTTAAGTGAATCTTAGGATAG T S R R V Y G R S L F A - F K - I L G - H L E G F T G G L S L R D L S E S - D S H I - K G L R A V S L C V I - V N L R I . . . : . . . 76079 CTTTAAGTGAGAAGATTACATGCAAAAGG : TATATTATGTATTTCTAAATTGTTAAATGTT L - V R R L H A K G : I L C I S K L L N V F K - E D Y M Q K : V Y Y V F L N C - M L A L S E K I T C K R : Y I M Y F - I V K C . . . . . . 76250 GTTCTTATGATTTATAGTATGATTTTTAATTGAAAATATGCATATTTCAAATAAAACTCT V L M I Y S M I F N - K Y A Y F K - N S F L - F I V - F L I E N M H I S N K T L C S Y D L - Y D F - L K I C I F Q I K L . . . . . . 76310 GTTTTCATGATTTTTATGAATAATGTCATAATTAGTACGTGTGGTTGTACTAACTCCATG V F M I F M N N V I I S T C G C T N S M F S - F L - I M S - L V R V V V L T P C C F H D F Y E - C H N - Y V W L Y - L H . . . . . . 76370 TTTTTATCTATATATATAGTTATTCGTGGGTGAAGAGCTTCGGGAAGAAGACTTGGACTG F L S I Y I V I R G - R A S G R R L G L F Y L Y I - L F V G E E L R E E D L D - V F I Y I Y S Y S W V K S F G K K T W T . . . . . . 76430 AAGATCATTCAAGAGAAGTTGAAGTATGTCCTCATTTGACTCAAGGGCATATATGTCTTT K I I Q E K L K Y V L I - L K G I Y V F R S F K R S - S M S S F D S R A Y M S F E D H S R E V E V C P H L T Q G H I C L . . . . . . 76490 TATGTTTTCTTTGAAGTATTTTAATAGACTAAGTATTTTCTATATTCGTATTTCGTATGA Y V F F E V F - - T K Y F L Y S Y F V - M F S L K Y F N R L S I F Y I R I S Y E L C F L - S I L I D - V F S I F V F R M . . . . . 76550 GCCGTGTCCAAGTGTTCTTATGTCTTAAGATGGTGAGATTGAGACTTAGT A V S K C S Y V L R W - D - D L P C P S V L M S - D G E I E T - S R V Q V F L C L K M V R L R L S Maximal non-overlapping open reading frames (>= 64 codons): none PGL 6 (+ strand): 80976 84723 AGS-1 (80976 81183) SCR (e 0.743) Exon 1 80976 81183 ( 208 n); score: 0.743 PGS (80976 81183) SGN-E271481- 3-phase translation of AGS-1 (+strand): . . . . . . 80976 AATCAATATTAATGAATAAGACATATGAAATATATAAAAGCTTGTAAAATAATGAAAATA N Q Y - - I R H M K Y I K A C K I M K I I N I N E - D I - N I - K L V K - - K Y S I L M N K T Y E I Y K S L - N N E N . . . . . . 81036 CTTAGTTTGTTAAGGAAAATGCAATAACAAACTCAACTTTACTTATATATGAAGTAATAT L S L L R K M Q - Q T Q L Y L Y M K - Y L V C - G K C N N K L N F T Y I - S N I T - F V K E N A I T N S T L L I Y E V I . . . . . . 81096 AGTTTCTATGGAAGATTTTCTAATAGAAAACCATTATGAGCCTTAGCGATGGTCAAATGT S F Y G R F S N R K P L - A L A M V K C V S M E D F L I E N H Y E P - R W S N V - F L W K I F - - K T I M S L S D G Q M . . . 81156 TCTTACCTCACGTTGAAAGAGGACCATC S Y L T L K E D H L T S R - K R T I F L P H V E R G P Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 81183 GATGGTCCTCTTTCAACGTGAGGTAAGAACATTTGACCATCGCTAAGGCTCATAATGGTT D G P L S T - G K N I - P S L R L I M V M V L F Q R E V R T F D H R - G S - W F W S S F N V R - E H L T I A K A H N G . . . . . . 81123 TTCTATTAGAAAATCTTCCATAGAAACTATATTACTTCATATATAAGTAAAGTTGAGTTT F Y - K I F H R N Y I T S Y I S K V E F S I R K S S I E T I L L H I - V K L S L F L L E N L P - K L Y Y F I Y K - S - V . . . . . . 81063 GTTATTGCATTTTCCTTAACAAACTAAGTATTTTCATTATTTTACAAGCTTTTATATATT V I A F S L T N - V F S L F Y K L L Y I L L H F P - Q T K Y F H Y F T S F Y I F C Y C I F L N K L S I F I I L Q A F I Y . . . 81003 TCATATGTCTTATTCATTAATATTGATT S Y V L F I N I D H M S Y S L I L I F I C L I H - Y - Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (81184 81603,82284 82307,83046 83052,84703 84723) SCR (e 0.819 d 0.000 a 0.864,e 0.625 d 0.000 a 0.950,e 0.714 d 0.000 a 0.000,e 0.714) Exon 1 81184 81603 ( 420 n); score: 0.819 Intron 1 81604 82283 ( 680 n); Pd: 0.000 Pa: 0.864 Exon 2 82284 82307 ( 24 n); score: 0.625 Intron 2 82308 83045 ( 738 n); Pd: 0.000 Pa: 0.950 Exon 3 83046 83052 ( 7 n); score: 0.714 Intron 3 83053 84702 (1650 n); Pd: 0.000 Pa: 0.000 Exon 4 84703 84723 ( 21 n); score: 0.714 PGS (81184 81603,82284 82307,83046 83052,84703 84723) SGN-E210664- PGS (81195 81603,82284 82307,83046 83052,84703 84723) SGN-E257221- 3-phase translation of AGS-2 (+strand): . . . . . . 81184 CAATCTATCAGCCTGAACTACTACGTGGATCCACTAGGCTATGTTAAAAAGTACAATGGA Q S I S L N Y Y V D P L G Y V K K Y N G N L S A - T T T W I H - A M L K S T M E I Y Q P E L L R G S T R L C - K V Q W . . . . . . 81244 GTCATCTAAAAAGTATGACCTTTTTTGTTTCCATGTTGGGTACATGGTTTATGGGGGATT V I - K V - P F L F P C W V H G L W G I S S K K Y D L F C F H V G Y M V Y G G L S H L K S M T F F V S M L G T W F M G D . . . . . . 81304 GAGTTAATATGAACTCATGTCCACATATCAGTGTTTAATTCTACTCCCAAAAATACTTAG E L I - T H V H I S V F N S T P K N T - S - Y E L M S T Y Q C L I L L P K I L S - V N M N S C P H I S V - F Y S Q K Y L . . . . . . 81364 CTTATATGTTTTTAAAATAACTTTTTCTCTGTTTTGAGGTAATTGCTCAAACATAGATTT L I C F - N N F F S V L R - L L K H R F L Y V F K I T F S L F - G N C S N I D L A Y M F L K - L F L C F E V I A Q T - I . . . . . . 81424 AAAATCTCATGGAAATTAGTTTACTGTTTACTGAAAACTAGCTAAAGGCTCTGTTAGAAG K I S W K L V Y C L L K T S - R L C - K K S H G N - F T V Y - K L A K G S V R S - N L M E I S L L F T E N - L K A L L E . . . . . . 81484 TCTAGCTTCCTTTCTTGCTCAAAATGTGAAAACATTTGTAACTCTTAGGGAATACTTAGT S S F L S C S K C E N I C N S - G I L S L A S F L A Q N V K T F V T L R E Y L V V - L P F L L K M - K H L - L L G N T - . . . . . . : 81544 TCCTTAAATTTTGAGAAATGAACTCAACTCTTTACTATTTGCTTAACTTGAAACTTGAGC : S L N F E K - T Q L F T I C L T - N L S : P - I L R N E L N S L L F A - L E T - A : F L K F - E M N S T L Y Y L L N L K L E : . . . : . : . . 82284 GTTTAACTAAACCAATATGAAAAT : GCTAAGT : TCACGTTTGTTATCCTGAAAG V - L N Q Y E N : A K : F T F V I L K F N - T N M K M : L S : S R L L S - K R L T K P I - K : C - V : H V C Y P E Maximal non-overlapping open reading frames (>= 64 codons): none PGL 7 (- strand): 86555 86021 AGS-1 (86555 86021) SCR (e 0.818) Exon 1 86555 86021 ( 535 n); score: 0.818 PGS (86555 86021) SGN-E232987+ PGS (86555 86021) SGN-E376857+ PGS (86552 86022) SGN-E550037+ 3-phase translation of AGS-1 (-strand): . . . . . . 86555 TTTATTTTTCACTAAAATTTTATTCCTTTCAACCTCTTAAAAAATTATACTTGCTTATTA F I F H - N F I P F N L L K N Y T C L L L F F T K I L F L S T S - K I I L A Y Y Y F S L K F Y S F Q P L K K L Y L L I . . . . . . 86495 TGCAAAAATAATGATTTAATAATCATCTAGTCTGGTCACTACTACAGTTTTCTTCTTTGA C K N N D L I I I - S G H Y Y S F L L - A K I M I - - S S S L V T T T V F F F D M Q K - - F N N H L V W S L L Q F S S L . . . . . . 86435 TTAGTTACCCTAACAGCGCCTCAACTTTGTTTACTCCCCTAAACGGCCTTCTCTGCCTAC L V T L T A P Q L C L L P - T A F S A Y - L P - Q R L N F V Y S P K R P S L P T I S Y P N S A S T L F T P L N G L L C L . . . . . . 86375 CGGTTTCAACCTTAGGATGGCATAGTCTGGCAATACTTGTTTGAAGAATATTTCTGTAGC R F Q P - D G I V W Q Y L F E E Y F C S G F N L R M A - S G N T C L K N I S V A P V S T L G W H S L A I L V - R I F L - . . . . . . 86315 AAACTTTCTAAAGATGGTTATTATAACATTATTCAAACATTATAAACAATTATAATTAAC K L S K D G Y Y N I I Q T L - T I I I N N F L K M V I I T L F K H Y K Q L - L T Q T F - R W L L - H Y S N I I N N Y N - . . . . . . 86255 AAGAGATTTTCAGGAATAAATTAATTTAGCTACTCATAAATATAAAATGGTATACCTGTT K R F S G I N - F S Y S - I - N G I P V R D F Q E - I N L A T H K Y K M V Y L F Q E I F R N K L I - L L I N I K W Y T C . . . . . . 86195 CTTGTAGATCATCTGTCATAGTTGATTTGTTTTCCATAGTTATTTAATTAACTAGCTCTG L V D H L S - L I C F P - L F N - L A L L - I I C H S - F V F H S Y L I N - L - S C R S S V I V D L F S I V I - L T S S . . . . . . 86135 ATACCAATGGAGGGGATGGAAGCGTAAAGAGAATATTCAGAAAGATGAGAGATGTAAGGA I P M E G M E A - R E Y S E R - E M - G Y Q W R G W K R K E N I Q K D E R C K D D T N G G D G S V K R I F R K M R D V R . . . . . . 86075 TGAAGGTGTGTTTTATTTATGAGGAAAGCTCCTCTATTTATACACAAAATTTACA - R C V L F M R K A P L F I H K I Y E G V F Y L - G K L L Y L Y T K F T M K V C F I Y E E S S S I Y T Q N L Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 86021 TGTAAATTTTGTGTATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTT C K F C V - I E E L S S - I K H T F I L V N F V Y K - R S F P H K - N T P S S L - I L C I N R G A F L I N K T H L H P . . . . . . 86081 ACATCTCTCATCTTTCTGAATATTCTCTTTACGCTTCCATCCCCTCCATTGGTATCAGAG T S L I F L N I L F T L P S P P L V S E H L S S F - I F S L R F H P L H W Y Q S Y I S H L S E Y S L Y A S I P S I G I R . . . . . . 86141 CTAGTTAATTAAATAACTATGGAAAACAAATCAACTATGACAGATGATCTACAAGAACAG L V N - I T M E N K S T M T D D L Q E Q - L I K - L W K T N Q L - Q M I Y K N R A S - L N N Y G K Q I N Y D R - S T R T . . . . . . 86201 GTATACCATTTTATATTTATGAGTAGCTAAATTAATTTATTCCTGAAAATCTCTTGTTAA V Y H F I F M S S - I N L F L K I S C - Y T I L Y L - V A K L I Y S - K S L V N G I P F Y I Y E - L N - F I P E N L L L . . . . . . 86261 TTATAATTGTTTATAATGTTTGAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTAC L - L F I M F E - C Y N N H L - K V C Y Y N C L - C L N N V I I T I F R K F A T I I I V Y N V - I M L - - P S L E S L L . . . . . . 86321 AGAAATATTCTTCAAACAAGTATTGCCAGACTATGCCATCCTAAGGTTGAAACCGGTAGG R N I L Q T S I A R L C H P K V E T G R E I F F K Q V L P D Y A I L R L K P V G Q K Y S S N K Y C Q T M P S - G - N R - . . . . . . 86381 CAGAGAAGGCCGTTTAGGGGAGTAAACAAAGTTGAGGCGCTGTTAGGGTAACTAATCAAA Q R R P F R G V N K V E A L L G - L I K R E G R L G E - T K L R R C - G N - S K A E K A V - G S K Q S - G A V R V T N Q . . . . . . 86441 GAAGAAAACTGTAGTAGTGACCAGACTAGATGATTATTAAATCATTATTTTTGCATAATA E E N C S S D Q T R - L L N H Y F C I I K K T V V V T R L D D Y - I I I F A - - R R K L - - - P D - M I I K S L F L H N . . . . . . 86501 AGCAAGTATAATTTTTTAAGAGGTTGAAAGGAATAAAATTTTAGTGAAAAATAAA S K Y N F L R G - K E - N F S E K - A S I I F - E V E R N K I L V K N K K Q V - F F K R L K G I K F - - K I Maximal non-overlapping open reading frames (>= 64 codons): none PGL 8 (+ strand): 87907 89561 AGS-1 (87907 88603) SCR (e 0.892) Exon 1 87907 88603 ( 697 n); score: 0.892 PGS (87907 88603) SGN-E578125+ 3-phase translation of AGS-1 (+strand): . . . . . . 87907 CCCAGATAATAGTCCCAGAAATAGTCCTAGGAGAACACCACCAACTTATTATACAGAGAG P R - - S Q K - S - E N T T N L L Y R E P D N S P R N S P R R T P P T Y Y T E S Q I I V P E I V L G E H H Q L I I Q R . . . . . . 87967 CTATCAACAATCAGATAGAAATAATGCAATATGGAACAGTAGATTAAATAAAAATTGGAC L S T I R - K - C N M E Q - I K - K L D Y Q Q S D R N N A I W N S R L N K N W T A I N N Q I E I M Q Y G T V D - I K I G . . . . . . 88027 ACCTAAACCAGCAAATGAACAATACAATTTTTTAGATTTAGATTGTGTCGCAGATATAAA T - T S K - T I Q F F R F R L C R R Y K P K P A N E Q Y N F L D L D C V A D I N H L N Q Q M N N T I F - I - I V S Q I - . . . . . . 88087 TAAAGCAATATTAATATGGATAGGAAATATGTCTAAACAGTTAATAGACAATAAAATAGA - S N I N M D R K Y V - T V N R Q - N R K A I L I W I G N M S K Q L I D N K I E I K Q Y - Y G - E I C L N S - - T I K - . . . . . . 88147 AACAGCAAAAACACCAAGATACATAGAAAGAACATTTGTAGGAACAACAAAATTATGGAT N S K N T K I H R K N I C R N N K I M D T A K T P R Y I E R T F V G T T K L W I K Q Q K H Q D T - K E H L - E Q Q N Y G . . . . . . 88207 AGAAAATCTACCCTCGGAAAGTTTAGAAGTACTTAGGAATGATAAGAAAATGGATGGATC R K S T L G K F R S T - E - - E N G W I E N L P S E S L E V L R N D K K M D G S - K I Y P R K V - K Y L G M I R K W M D . . . . . . 88267 TGCATCAGCAACAAATATAGATATACTAGATAAATATGAATCAGCAATAAGAAATGAATT C I S N K Y R Y T R - I - I S N K K - I A S A T N I D I L D K Y E S A I R N E F L H Q Q Q I - I Y - I N M N Q Q - E M N . . . . . . 88327 TGGAGGCATGACTACAGATATAAGAGAACAAAATAGAGAAAAAATAATAAATAGACAACT W R H D Y R Y K R T K - R K N N K - T T G G M T T D I R E Q N R E K I I N R Q L L E A - L Q I - E N K I E K K - - I D N . . . . . . 88387 TATGACAAAATTAGCTATATGTAAAATGTGTTACTTAGAAGAATATACTTGCGCATTTAA Y D K I S Y M - N V L L R R I Y L R I - M T K L A I C K M C Y L E E Y T C A F K L - Q N - L Y V K C V T - K N I L A H L . . . . . . 88447 AGAATATTATTACAAAGCTAAATACAATTTAGACGAAGCAAAAGAAATAAGAAAACAATA R I L L Q S - I Q F R R S K R N K K T I E Y Y Y K A K Y N L D E A K E I R K Q Y K N I I T K L N T I - T K Q K K - E N N . . . . . . 88507 TTATACAAAATTACCAGAACCATTTAGTACAAACGTAATAAAGGATTGGAATAATGAAGG L Y K I T R T I - Y K R N K G L E - - R Y T K L P E P F S T N V I K D W N N E G I I Q N Y Q N H L V Q T - - R I G I M K . . . . 88567 AATAATAGATACTTTAGGATCTAGAATAAAATTTTTA N N R Y F R I - N K I F I I D T L G S R I K F L E - - I L - D L E - N F Maximal non-overlapping open reading frames (>= 64 codons): >C10HBa0111D09.1+_PGL-8_AGS-1_PPS_1 (87908 88603) (frame '2'; 696 bp, 232 residues) 1 PDNSPRNSPR RTPPTYYTES YQQSDRNNAI WNSRLNKNWT PKPANEQYNF LDLDCVADIN 61 KAILIWIGNM SKQLIDNKIE TAKTPRYIER TFVGTTKLWI ENLPSESLEV LRNDKKMDGS 121 ASATNIDILD KYESAIRNEF GGMTTDIREQ NREKIINRQL MTKLAICKMC YLEEYTCAFK 181 EYYYKAKYNL DEAKEIRKQY YTKLPEPFST NVIKDWNNEG IIDTLGSRIK FL 3-phase translation of AGS-1 (-strand): . . . . . . 88603 TAAAAATTTTATTCTAGATCCTAAAGTATCTATTATTCCTTCATTATTCCAATCCTTTAT - K F Y S R S - S I Y Y S F I I P I L Y K N F I L D P K V S I I P S L F Q S F I K I L F - I L K Y L L F L H Y S N P L . . . . . . 88543 TACGTTTGTACTAAATGGTTCTGGTAATTTTGTATAATATTGTTTTCTTATTTCTTTTGC Y V C T K W F W - F C I I L F S Y F F C T F V L N G S G N F V - Y C F L I S F A L R L Y - M V L V I L Y N I V F L F L L . . . . . . 88483 TTCGTCTAAATTGTATTTAGCTTTGTAATAATATTCTTTAAATGCGCAAGTATATTCTTC F V - I V F S F V I I F F K C A S I F F S S K L Y L A L - - Y S L N A Q V Y S S L R L N C I - L C N N I L - M R K Y I L . . . . . . 88423 TAAGTAACACATTTTACATATAGCTAATTTTGTCATAAGTTGTCTATTTATTATTTTTTC - V T H F T Y S - F C H K L S I Y Y F F K - H I L H I A N F V I S C L F I I F S L S N T F Y I - L I L S - V V Y L L F F . . . . . . 88363 TCTATTTTGTTCTCTTATATCTGTAGTCATGCCTCCAAATTCATTTCTTATTGCTGATTC S I L F S Y I C S H A S K F I S Y C - F L F C S L I S V V M P P N S F L I A D S L Y F V L L Y L - S C L Q I H F L L L I . . . . . . 88303 ATATTTATCTAGTATATCTATATTTGTTGCTGATGCAGATCCATCCATTTTCTTATCATT I F I - Y I Y I C C - C R S I H F L I I Y L S S I S I F V A D A D P S I F L S F H I Y L V Y L Y L L L M Q I H P F S Y H . . . . . . 88243 CCTAAGTACTTCTAAACTTTCCGAGGGTAGATTTTCTATCCATAATTTTGTTGTTCCTAC P K Y F - T F R G - I F Y P - F C C S Y L S T S K L S E G R F S I H N F V V P T S - V L L N F P R V D F L S I I L L F L . . . . . . 88183 AAATGTTCTTTCTATGTATCTTGGTGTTTTTGCTGTTTCTATTTTATTGTCTATTAACTG K C S F Y V S W C F C C F Y F I V Y - L N V L S M Y L G V F A V S I L L S I N C Q M F F L C I L V F L L F L F Y C L L T . . . . . . 88123 TTTAGACATATTTCCTATCCATATTAATATTGCTTTATTTATATCTGCGACACAATCTAA F R H I S Y P Y - Y C F I Y I C D T I - L D I F P I H I N I A L F I S A T Q S K V - T Y F L S I L I L L Y L Y L R H N L . . . . . . 88063 ATCTAAAAAATTGTATTGTTCATTTGCTGGTTTAGGTGTCCAATTTTTATTTAATCTACT I - K I V L F I C W F R C P I F I - S T S K K L Y C S F A G L G V Q F L F N L L N L K N C I V H L L V - V S N F Y L I Y . . . . . . 88003 GTTCCATATTGCATTATTTCTATCTGATTGTTGATAGCTCTCTGTATAATAAGTTGGTGG V P Y C I I S I - L L I A L C I I S W W F H I A L F L S D C - - L S V - - V G G C S I L H Y F Y L I V D S S L Y N K L V . . . . 87943 TGTTCTCCTAGGACTATTTCTGGGACTATTATCTGGG C S P R T I S G T I I W V L L G L F L G L L S G V F S - D Y F W D Y Y L Maximal non-overlapping open reading frames (>= 64 codons): >C10HBa0111D09.1-_PGL-8_AGS-1_PPS_1 (88416 87970) (frame '2'; 444 bp, 148 residues) 1 HILHIANFVI SCLFIIFSLF CSLISVVMPP NSFLIADSYL SSISIFVADA DPSIFLSFLS 61 TSKLSEGRFS IHNFVVPTNV LSMYLGVFAV SILLSINCLD IFPIHINIAL FISATQSKSK 121 KLYCSFAGLG VQFLFNLLFH IALFLSDC- AGS-2 (88802 89561) SCR (e 0.914) Exon 1 88802 89561 ( 760 n); score: 0.914 PGS (88802 89561) SGN-E343544+ 3-phase translation of AGS-2 (+strand): . . . . . . 88802 TATTATGTAAAAAACTATAAAATAAAAAGACCATACAGACCGAAAAGAAAGATATCCCAA Y Y V K N Y K I K R P Y R P K R K I S Q I M - K T I K - K D H T D R K E R Y P N L C K K L - N K K T I Q T E K K D I P . . . . . . 88862 TGTACTTGTTATAATTGTGGAAAGATAGGACACATAGCTAAAGATTGTAAATTACCCAAA C T C Y N C G K I G H I A K D C K L P K V L V I I V E R - D T - L K I V N Y P K M Y L L - L W K D R T H S - R L - I T Q . . . . . . 88922 AATCCAAAAAGAAAACAGATAGCAGAATTAATTATAGATAATGAAAAATATATGCAAATA N P K R K Q I A E L I I D N E K Y M Q I I Q K E N R - Q N - L - I M K N I C K - K S K K K T D S R I N Y R - - K I Y A N . . . . . . 88982 GAGTACATAGATTATGAATTAAGTGAAAATGATAGTATATATGAAGTATCAGATATAGAA E Y I D Y E L S E N D S I Y E V S D I E S T - I M N - V K M I V Y M K Y Q I - K R V H R L - I K - K - - Y I - S I R Y R . . . . . . 89042 ACTGAGAATGAAGAAGAAAATATTAACATAGATAATAATGAAACAGATGAAGAAATATAA T E N E E E N I N I D N N E T D E E I - L R M K K K I L T - I I M K Q M K K Y N N - E - R R K Y - H R - - - N R - R N I . . . . . . 89102 TGTCTGAAAATGAAATAAAAATAATATCTAAGGAAGAATATCAAAATGAAGAATCATCAG C L K M K - K - Y L R K N I K M K N H Q V - K - N K N N I - G R I S K - R I I R M S E N E I K I I S K E E Y Q N E E S S . . . . . . 89162 AACAGAAAATTATATTTGATAATACGATATTTGAACAAATAAAAGGAAAAGAATTAGATT N R K L Y L I I R Y L N K - K E K N - I T E N Y I - - Y D I - T N K R K R I R F E Q K I I F D N T I F E Q I K G K E L D . . . . . . 89222 TAAGTGTTGAAAAAGTATTAGAAATACCTATTTTAAGAAATTTGTTTAAAAGACAAAAAG - V L K K Y - K Y L F - E I C L K D K K K C - K S I R N T Y F K K F V - K T K R L S V E K V L E I P I L R N L F K R Q K . . . . . . 89282 AAGAATACTATGTAGTTAGCCAAAAAGAACATATCATAGATTGCAAATACACAAGAGGAA K N T M - L A K K N I S - I A N T Q E E R I L C S - P K R T Y H R L Q I H K R K E E Y Y V V S Q K E H I I D C K Y T R G . . . . . . 89342 AAACATATATACCTATAATAAATAAAAGAATGATAAACAAAGAAATACAAGATATAAAAG K H I Y L - - I K E - - T K K Y K I - K N I Y T Y N K - K N D K Q R N T R Y K S K T Y I P I I N K R M I N K E I Q D I K . . . . . . 89402 CTAAATCACCAATAAAATATGTACATTTAGGAGGAACAGAAATATTAATAAAAGCCTGCT L N H Q - N M Y I - E E Q K Y - - K P A - I T N K I C T F R R N R N I N K S L L A K S P I K Y V H L G G T E I L I K A C . . . . . . 89462 TTAGAGAAGGAATAGATACACCTATAGAAATATATTTAGCAGATGATAGAATTGTACACC L E K E - I H L - K Y I - Q M I E L Y T - R R N R Y T Y R N I F S R - - N C T P F R E G I D T P I E I Y L A D D R I V H . . . . 89522 CTATAGAAAAAAGCGTAATTAGTGCAGTAAAAGGAAACTT L - K K A - L V Q - K E T Y R K K R N - C S K R K L P I E K S V I S A V K G N Maximal non-overlapping open reading frames (>= 64 codons): >C10HBa0111D09.1+_PGL-8_AGS-2_PPS_1 (89092 89559) (frame '0'; 468 bp, 156 residues) 1 RNIMSENEIK IISKEEYQNE ESSEQKIIFD NTIFEQIKGK ELDLSVEKVL EIPILRNLFK 61 RQKEEYYVVS QKEHIIDCKY TRGKTYIPII NKRMINKEIQ DIKAKSPIKY VHLGGTEILI 121 KACFREGIDT PIEIYLADDR IVHPIEKSVI SAVKGN >C10HBa0111D09.1+_PGL-8_AGS-2_PPS_2 (88802 89101) (frame '1'; 297 bp, 99 residues) 1 YYVKNYKIKR PYRPKRKISQ CTCYNCGKIG HIAKDCKLPK NPKRKQIAEL IIDNEKYMQI 61 EYIDYELSEN DSIYEVSDIE TENEEENINI DNNETDEEI- 3-phase translation of AGS-2 (-strand): . . . . . . 89561 AAGTTTCCTTTTACTGCACTAATTACGCTTTTTTCTATAGGGTGTACAATTCTATCATCT K F P F T A L I T L F S I G C T I L S S S F L L L H - L R F F L - G V Q F Y H L V S F Y C T N Y A F F Y R V Y N S I I . . . . . . 89501 GCTAAATATATTTCTATAGGTGTATCTATTCCTTCTCTAAAGCAGGCTTTTATTAATATT A K Y I S I G V S I P S L K Q A F I N I L N I F L - V Y L F L L - S R L L L I F C - I Y F Y R C I Y S F S K A G F Y - Y . . . . . . 89441 TCTGTTCCTCCTAAATGTACATATTTTATTGGTGATTTAGCTTTTATATCTTGTATTTCT S V P P K C T Y F I G D L A F I S C I S L F L L N V H I L L V I - L L Y L V F L F C S S - M Y I F Y W - F S F Y I L Y F . . . . . . 89381 TTGTTTATCATTCTTTTATTTATTATAGGTATATATGTTTTTCCTCTTGTGTATTTGCAA L F I I L L F I I G I Y V F P L V Y L Q C L S F F Y L L - V Y M F F L L C I C N F V Y H S F I Y Y R Y I C F S S C V F A . . . . . . 89321 TCTATGATATGTTCTTTTTGGCTAACTACATAGTATTCTTCTTTTTGTCTTTTAAACAAA S M I C S F W L T T - Y S S F C L L N K L - Y V L F G - L H S I L L F V F - T N I Y D M F F L A N Y I V F F F L S F K Q . . . . . . 89261 TTTCTTAAAATAGGTATTTCTAATACTTTTTCAACACTTAAATCTAATTCTTTTCCTTTT F L K I G I S N T F S T L K S N S F P F F L K - V F L I L F Q H L N L I L F L L I S - N R Y F - Y F F N T - I - F F S F . . . . . . 89201 ATTTGTTCAAATATCGTATTATCAAATATAATTTTCTGTTCTGATGATTCTTCATTTTGA I C S N I V L S N I I F C S D D S S F - F V Q I S Y Y Q I - F S V L M I L H F D Y L F K Y R I I K Y N F L F - - F F I L . . . . . . 89141 TATTCTTCCTTAGATATTATTTTTATTTCATTTTCAGACATTATATTTCTTCATCTGTTT Y S S L D I I F I S F S D I I F L H L F I L P - I L F L F H F Q T L Y F F I C F I F F L R Y Y F Y F I F R H Y I S S S V . . . . . . 89081 CATTATTATCTATGTTAATATTTTCTTCTTCATTCTCAGTTTCTATATCTGATACTTCAT H Y Y L C - Y F L L H S Q F L Y L I L H I I I Y V N I F F F I L S F Y I - Y F I S L L S M L I F S S S F S V S I S D T S . . . . . . 89021 ATATACTATCATTTTCACTTAATTCATAATCTATGTACTCTATTTGCATATATTTTTCAT I Y Y H F H L I H N L C T L F A Y I F H Y T I I F T - F I I Y V L Y L H I F F I Y I L S F S L N S - S M Y S I C I Y F S . . . . . . 88961 TATCTATAATTAATTCTGCTATCTGTTTTCTTTTTGGATTTTTGGGTAATTTACAATCTT Y L - L I L L S V F F L D F W V I Y N L I Y N - F C Y L F S F W I F G - F T I F L S I I N S A I C F L F G F L G N L Q S . . . . . . 88901 TAGCTATGTGTCCTATCTTTCCACAATTATAACAAGTACATTGGGATATCTTTCTTTTCG - L C V L S F H N Y N K Y I G I S F F S S Y V S Y L S T I I T S T L G Y L S F R L A M C P I F P Q L - Q V H W D I F L F . . . . 88841 GTCTGTATGGTCTTTTTATTTTATAGTTTTTTACATAATA V C M V F L F Y S F L H N S V W S F Y F I V F Y I I G L Y G L F I L - F F T - Maximal non-overlapping open reading frames (>= 64 codons): >C10HBa0111D09.1-_PGL-8_AGS-2_PPS_1 (89561 89289) (frame '1'; 270 bp, 90 residues) 1 KFPFTALITL FSIGCTILSS AKYISIGVSI PSLKQAFINI SVPPKCTYFI GDLAFISCIS 61 LFIILLFIIG IYVFPLVYLQ SMICSFWLTT - PGL 9 (+ strand): 90982 93834 AGS-1 (90982 91265,91660 91692,93529 93646,93720 93834) SCR (e 0.923 d 0.000 a 0.000,e 0.636 d 0.916 a 0.000,e 0.891 d 0.000 a 0.000,e 0.861) Exon 1 90982 91265 ( 284 n); score: 0.923 Intron 1 91266 91659 ( 394 n); Pd: 0.000 Pa: 0.000 Exon 2 91660 91692 ( 33 n); score: 0.636 Intron 2 91693 93528 (1836 n); Pd: 0.916 Pa: 0.000 Exon 3 93529 93646 ( 118 n); score: 0.891 Intron 3 93647 93719 ( 73 n); Pd: 0.000 Pa: 0.000 Exon 4 93720 93834 ( 115 n); score: 0.861 PGS (90982 91247) SGN-E391508+ PGS (91118 91265,91660 91692,93529 93554) SGN-E276276- PGS (93551 93646,93720 93834) SGN-E376857- PGS (93563 93646,93720 93834) SGN-E232987- 3-phase translation of AGS-1 (+strand): . . . . . . 90982 TTAAAATATAACTTTGCTGATCTAGAAGAATTTAAAATACATATAAATGAATTGTTAGAA L K Y N F A D L E E F K I H I N E L L E - N I T L L I - K N L K Y I - M N C - K K I - L C - S R R I - N T Y K - I V R . . . . . . 91042 AATAATTACATACAAAAAAGCAATAGTAAACATACAAGTCCAGCATTTATAGTAATAAAA N N Y I Q K S N S K H T S P A F I V I K I I T Y K K A I V N I Q V Q H L - - - N K - L H T K K Q - - T Y K S S I Y S N K . . . . . . 91102 CATAGTGAACAAAAAAGAGGTAAAAGTAGAATGGTCATAGATTATCGTAATCTAAATGCT H S E Q K R G K S R M V I D Y R N L N A I V N K K E V K V E W S - I I V I - M L T - - T K K R - K - N G H R L S - S K C . . . . . . 91162 AAAACCAAAACATACAATTATCCAATACCAAACAAAATACTAAAAATAAGACAAATACAA K T K T Y N Y P I P N K I L K I R Q I Q K P K H T I I Q Y Q T K Y - K - D K Y K - N Q N I Q L S N T K Q N T K N K T N T . . . . . : . 91222 GGATATAATTATTTCAGTAAATTTGACTGCAAATCAGGATTTTA : AAATTATAATCCTTTC G Y N Y F S K F D C K S G F - : N Y N P F D I I I S V N L T A N Q D F : K I I I L S R I - L F Q - I - L Q I R I L : K L - S F . . : . . . . 91676 TAGGATTAGTAAATCAG : TTTGTCGTGTTGCGTCGGCTATAAAAAGCCAAATTGTATAAAA - D - - I S : L S C C V G Y K K P N C I K R I S K S : V C R V A S A I K S Q I V - K L G L V N Q : F V V L R R L - K A K L Y K . . . . . . 93572 GTCGTAAAGTAAATAGTTTGTCAGCCAATCATGTAAAAAGTTTGTCGGCCAATTATATAA V V K - I V C Q P I M - K V C R P I I - S - S K - F V S Q S C K K F V G Q L Y K S R K V N S L S A N H V K S L S A N Y I . . : . . . . 93632 AGTAGTAATAGTAAG : AGTTTGTAAATTTTGTATATAAATAGAGGAGCTTTCCTCATAAAT S S N S K : S L - I L Y I N R G A F L I N V V I V R : V C K F C I - I E E L S S - I K - - - - : E F V N F V Y K - R S F P H K . . . . . . 93765 AAAACACACCTTCATCCTTACATCTCTCATCTTTCTGAATATTCTCTTTACGCTTCCATC K T H L H P Y I S H L S E Y S L Y A S I K H T F I L T S L I F L N I L F T L P S - N T P S S L H L S S F - I F S L R F H . 93825 CCCTCCATTG P S I P P L P L H Maximal non-overlapping open reading frames (>= 64 codons): >C10HBa0111D09.1+_PGL-9_AGS-1_PPS_1 (90982 91265,91660 91660) (frame '1'; 282 bp, 94 residues) 1 LKYNFADLEE FKIHINELLE NNYIQKSNSK HTSPAFIVIK HSEQKRGKSR MVIDYRNLNA 61 KTKTYNYPIP NKILKIRQIQ GYNYFSKFDC KSGF- AGS-2 (93472 93646,93720 93834) SCR (e 0.800 d 0.000 a 0.000,e 0.861) Exon 1 93472 93646 ( 175 n); score: 0.800 Intron 1 93647 93719 ( 73 n); Pd: 0.000 Pa: 0.000 Exon 2 93720 93834 ( 115 n); score: 0.861 PGS (93472 93646,93720 93834) SGN-E550037- 3-phase translation of AGS-2 (+strand): . . . . . . 93472 TATTAAAATTCTGTGTCGGCTGAATATCAGCCATATGTAGAAAGAAATAATTTTATTTTT Y - N S V S A E Y Q P Y V E R N N F I F I K I L C R L N I S H M - K E I I L F L L K F C V G - I S A I C R K K - F Y F . . . . . . 93532 GTCGTGTTGCGTCGGCTATAAAAAGCCAAATTGTATAAAAGTCGTAAAGTAAATAGTTTG V V L R R L - K A K L Y K S R K V N S L S C C V G Y K K P N C I K V V K - I V C C R V A S A I K S Q I V - K S - S K - F . . . . . . : 93592 TCAGCCAATCATGTAAAAAGTTTGTCGGCCAATTATATAAAGTAGTAATAGTAAG : AGTTT S A N H V K S L S A N Y I K - - - - : E F Q P I M - K V C R P I I - S S N S K : S L V S Q S C K K F V G Q L Y K V V I V R : V . . . . . . 93725 GTAAATTTTGTATATAAATAGAGGAGCTTTCCTCATAAATAAAACACACCTTCATCCTTA V N F V Y K - R S F P H K - N T P S S L - I L Y I N R G A F L I N K T H L H P Y C K F C I - I E E L S S - I K H T F I L . . . . . 93785 CATCTCTCATCTTTCTGAATATTCTCTTTACGCTTCCATCCCCTCCATTG H L S S F - I F S L R F H P L H I S H L S E Y S L Y A S I P S I T S L I F L N I L F T L P S P P L Maximal non-overlapping open reading frames (>= 64 codons): none PGL 10 (- strand): 96906 96496 AGS-1 (96906 96496) SCR (e 0.759) Exon 1 96906 96496 ( 411 n); score: 0.759 PGS (96906 96496) SGN-E541821- 3-phase translation of AGS-1 (-strand): . . . . . . 96906 TTATTGTTGAGAATATGTGATTGTTAGAATGATATTGTTGAGATATGTGCTTGTAAATTG L L L R I C D C - N D I V E I C A C K L Y C - E Y V I V R M I L L R Y V L V N C I V E N M - L L E - Y C - D M C L - I . . . . . . 96846 TGCACTGTTAGGTTGAACTTATTTTATGCACGTTGTTGTTGTGGAGATTCGGTTGGGGTG C T V R L N L F Y A R C C C G D S V G V A L L G - T Y F M H V V V V E I R L G C V H C - V E L I L C T L L L W R F G W G . . . . . . 96786 TAAGGAGTACCCGTATTTTATCCTCTTAGATTGTGTTTAGAGGTTTACTTGCTGAGTACC - G V P V F Y P L R L C L E V Y L L S T K E Y P Y F I L L D C V - R F T C - V P V R S T R I L S S - I V F R G L L A E Y . . . . . . 96726 GTGTGATTGATACTCACCCCTTGCTTCTACTATTTTGTTTGTAGGTTATTAGCTTGGACC V - L I L T P C F Y Y F V C R L L A W T C D - Y S P L A S T I L F V G Y - L G P R V I D T H P L L L L F C L - V I S L D . . . . . . 96666 TTTGTGATATTTTCTCTTTACCTTGTATGAGGCTTCTTATGGAGATTTATGAGGCCGTTG F V I F S L Y L V - G F L W R F M R P L L - Y F L F T L Y E A S Y G D L - G R C L C D I F S L P C M R L L M E I Y E A V . . . . . . 96606 CTTGTCATTTCAGTGGACCTTCTTACTGCTATTTATGATCTTGTTCTACTCTAGAAACAA L V I S V D L L T A I Y D L V L L - K Q L S F Q W T F L L L F M I L F Y S R N N A C H F S G P S Y C Y L - S C S T L E T . . . . . . 96546 TGTCATATGAGACTTGTATTTTTCTTTTGATTAGATTGCAATACTTTAGAG C H M R L V F F F - L D C N T L E V I - D L Y F S F D - I A I L - M S Y E T C I F L L I R L Q Y F R Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 96496 CTCTAAAGTATTGCAATCTAATCAAAAGAAAAATACAAGTCTCATATGACATTGTTTCTA L - S I A I - S K E K Y K S H M T L F L S K V L Q S N Q K K N T S L I - H C F - L K Y C N L I K R K I Q V S Y D I V S . . . . . . 96556 GAGTAGAACAAGATCATAAATAGCAGTAAGAAGGTCCACTGAAATGACAAGCAACGGCCT E - N K I I N S S K K V H - N D K Q R P S R T R S - I A V R R S T E M T S N G L R V E Q D H K - Q - E G P L K - Q A T A . . . . . . 96616 CATAAATCTCCATAAGAAGCCTCATACAAGGTAAAGAGAAAATATCACAAAGGTCCAAGC H K S P - E A S Y K V K R K Y H K G P S I N L H K K P H T R - R E N I T K V Q A S - I S I R S L I Q G K E K I S Q R S K . . . . . . 96676 TAATAACCTACAAACAAAATAGTAGAAGCAAGGGGTGAGTATCAATCACACGGTACTCAG - - P T N K I V E A R G E Y Q S H G T Q N N L Q T K - - K Q G V S I N H T V L S L I T Y K Q N S R S K G - V S I T R Y S . . . . . . 96736 CAAGTAAACCTCTAAACACAATCTAAGAGGATAAAATACGGGTACTCCTTACACCCCAAC Q V N L - T Q S K R I K Y G Y S L H P N K - T S K H N L R G - N T G T P Y T P T A S K P L N T I - E D K I R V L L T P Q . . . . . . 96796 CGAATCTCCACAACAACAACGTGCATAAAATAAGTTCAACCTAACAGTGCACAATTTACA R I S T T T T C I K - V Q P N S A Q F T E S P Q Q Q R A - N K F N L T V H N L Q P N L H N N N V H K I S S T - Q C T I Y . . . . . . 96856 AGCACATATCTCAACAATATCATTCTAACAATCACATATTCTCAACAATAA S T Y L N N I I L T I T Y S Q Q - A H I S T I S F - Q S H I L N N K H I S Q Q Y H S N N H I F S T I Maximal non-overlapping open reading frames (>= 64 codons): none PGL 11 (+ strand): 97992 102187 AGS-1 (97992 98030,98095 98647,98874 98901,99281 99313,101877 101919) SCR (e 0.564 d 0.947 a 0.000,e 0.930 d 0.108 a 0.809,e 0.643 d 0.000 a 0.000,e 0.697 d 0.000 a 0.000,e 0.721) Exon 1 97992 98030 ( 39 n); score: 0.564 Intron 1 98031 98094 ( 64 n); Pd: 0.947 Pa: 0.000 Exon 2 98095 98647 ( 553 n); score: 0.930 Intron 2 98648 98873 ( 226 n); Pd: 0.108 Pa: 0.809 Exon 3 98874 98901 ( 28 n); score: 0.643 Intron 3 98902 99280 ( 379 n); Pd: 0.000 Pa: 0.000 Exon 4 99281 99313 ( 33 n); score: 0.697 Intron 4 99314 101876 (2563 n); Pd: 0.000 Pa: 0.000 Exon 5 101877 101919 ( 43 n); score: 0.721 PGS (97992 98030,98095 98496) SGN-E262710- PGS (97992 98030,98095 98496) SGN-E369760- PGS (97992 98030,98095 98466) SGN-E254845- PGS (97992 98030,98095 98465) SGN-E273518- PGS (98094 98487) SGN-E262800- PGS (98096 98238) SGN-E241550- PGS (98096 98216) SGN-E236009- PGS (98109 98365) SGN-E263584- PGS (98109 98326) SGN-E261066- PGS (98109 98325) SGN-E276669- PGS (98110 98496) SGN-E255327- PGS (98110 98430) SGN-E258205- PGS (98110 98239) SGN-E228046- PGS (98271 98496) SGN-E261310- PGS (98321 98515) SGN-E542858+ PGS (98467 98647,98874 98901,99281 99313,101877 101919) SGN-E395007- 3-phase translation of AGS-1 (+strand): . . . . : . . 97992 GGTGTAGTCTCAATATCTCCAAATAACATAATCTTAATG : AATGTGATTTCACCCTGTTAT G V V S I S P N N I I L M : N V I S P C Y V - S Q Y L Q I T - S - - : M - F H P V I C S L N I S K - H N L N : E C D F T L L . . . . . . 98116 TCTTACAATAACTTGTATTTATGAAGTTAATGAACAGAAACAGAAACAAGATGAAGCAGA S Y N N L Y L - S - - T E T E T R - S R L T I T C I Y E V N E Q K Q K Q D E A E F L Q - L V F M K L M N R N R N K M K Q . . . . . . 98176 AAAAATTTAAAATAGAGGAATTAATCCGAGTCCACTGAAACTACTGTGTGTCCTTAAGAA K N L K - R N - S E S T E T T V C P - E K I - N R G I N P S P L K L L C V L K K K K F K I E E L I R V H - N Y C V S L R . . . . . . 98236 ATTTAATCCCCTCACTGTACCCAAGGTTATGGATTAATTTCTCCCAAGATAAAACGGATT I - S P H C T Q G Y G L I S P K I K R I F N P L T V P K V M D - F L P R - N G L N L I P S L Y P R L W I N F S Q D K T D . . . . . . 98296 ACACCTGTTAAAGAAATAGCGGTACCTCAAACTTCTTTAACTTCAACGAACTGAAAACAG T P V K E I A V P Q T S L T S T N - K Q H L L K K - R Y L K L L - L Q R T E N S Y T C - R N S G T S N F F N F N E L K T . . . . . . 98356 CAACAAGTCACACAGACTCAGTCGATCGACACTTTGATTTTATTTGAGAGAAAAATAAAT Q Q V T Q T Q S I D T L I L F E R K I N N K S H R L S R S T L - F Y L R E K - M A T S H T D S V D R H F D F I - E K N K . . . . . . 98416 GCAGAGAAAGAAAAAATCTTCAGTGATTAAAAAATCAAAAATTGACTTCCTTTTATAGCC A E K E K I F S D - K I K N - L P F I A Q R K K K S S V I K K S K I D F L L - P C R E R K N L Q - L K N Q K L T S F Y S . . . . . . 98476 ATTTTCAGCAAGGAACATGTCTTTTCAGTGAAATCTGTTCAGACCCATTTTATCCAGAAA I F S K E H V F S V K S V Q T H F I Q K F S A R N M S F Q - N L F R P I L S R K H F Q Q G T C L F S E I C S D P F Y P E . . . . . . 98536 GTTGTGTCTTTTGGAAAAAATAACAGCTTTTCGAAAAAATTGTGTCTGTTAGGAAAATAA V V S F G K N N S F S K K L C L L G K - L C L L E K I T A F R K N C V C - E N N S C V F W K K - Q L F E K I V S V R K I . . . . . . : 98596 CTACTTTTTGGAAAGTAACGACTTTTCGAAAAGTAACGACTTTTCGGAAAGA : GTAAAGGT L L F G K - R L F E K - R L F G K : S K G Y F L E S N D F S K S N D F S E R : V K V T T F W K V T T F R K V T T F R K E : - R . . : . . . . : 98882 TAATCGCATCTGGATAAGTA : AAAATAATAATAATATTTTTTTTCTTTGACAAT : GATTTAT - S H L D K - : K - - - Y F F S L T M : I Y N R I W I S : K N N N N I F F L - Q : - F I L I A S G - V : K I I I I F F F F D N : D L . . . . 101884 TGCACTCAAATTTTGGCAAAATATATAAGTTAATCA C T Q I L A K Y I S - S A L K F W Q N I - V N L H S N F G K I Y K L I Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (98678 99238) SCR (e 0.869) Exon 1 98678 99238 ( 561 n); score: 0.869 PGS (98678 98806) SGN-E542859- PGS (98680 98806) SGN-E250408- PGS (98692 99238) SGN-E351952- PGS (98692 99238) SGN-E357316- PGS (98693 98804) SGN-E250410- 3-phase translation of AGS-2 (+strand): . . . . . . 98678 TGCAAATTTATAAGAAATGACTTTTCATTTGCACTTTGCAAATGACTTTTCATTTTCCCT C K F I R N D F S F A L C K - L F I F P A N L - E M T F H L H F A N D F S F S L Q I Y K K - L F I C T L Q M T F H F P . . . . . . 98738 CCAAAGTAGTTCCCTCACTTTTCATATTCTCTCTTTTCTTTTCCCATTCACATTTGCTAA P K - F P H F S Y S L F S F P I H I C - Q S S S L T F H I L S F L F P F T F A K S K V V P S L F I F S L F F S H S H L L . . . . . . 98798 AACCCAACAATCCCCCACATGAATGGGGAAGGCTATTGTTAAAACATATGCATGAAAAAA N P T I P H M N G E G Y C - N I C M K K T Q Q S P T - M G K A I V K T Y A - K N K P N N P P H E W G R L L L K H M H E K . . . . . . 98858 CTTGTGTGTCTTGTAGGTAAAGGTTAATCGCATCTGGATAAGTAGGTTTACCTTTAAACT L V C L V G K G - S H L D K - V Y L - T L C V L - V K V N R I W I S R F T F K L T C V S C R - R L I A S G - V G L P L N . . . . . . 98918 TTCCGTAGTGAACATATATCGGATATACTCGGTCAATCGGTAGATTTGATATCTTTGAAC F R S E H I S D I L G Q S V D L I S L N S V V N I Y R I Y S V N R - I - Y L - T F P - - T Y I G Y T R S I G R F D I F E . . . . . . 98978 CGTCGAGCTTTGGTGTATACCTAGACAACATATCACACAATCAACCCTTGAACTGTTCTT R R A L V Y T - T T Y H T I N P - T V L V E L W C I P R Q H I T Q S T L E L F L P S S F G V Y L D N I S H N Q P L N C S . . . . . . 99038 AGTTCTCATTGTTTTGTTCGTTTCAGCCATGAACACATCTTGGATAGTAAGTGCTTAAAG S S H C F V R F S H E H I L D S K C L K V L I V L F V S A M N T S W I V S A - R - F S L F C S F Q P - T H L G - - V L K . . . . . . 99098 AACTGGCCTTACCGGATTCTCCTTGAAGCGGCTTACACTTCACACTTACATAGGTGATTT N W P Y R I L L E A A Y T S H L H R - F T G L T G F S L K R L T L H T Y I G D F E L A L P D S P - S G L H F T L T - V I . . . . . . 99158 CTAAATGTGTTATCCCATAGATACACCATTTTATATTCCCTGTATCAAACTTAGAAACCA L N V L S H R Y T I L Y S L Y Q T - K P - M C Y P I D T P F Y I P C I K L R N H S K C V I P - I H H F I F P V S N L E T . . . 99218 TTAAAAATTCCTTATGTCTTT L K I P Y V F - K F L M S I K N S L C L Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-2 (-strand): . . . . . . 99238 AAAGACATAAGGAATTTTTAATGGTTTCTAAGTTTGATACAGGGAATATAAAATGGTGTA K D I R N F - W F L S L I Q G I - N G V K T - G I F N G F - V - Y R E Y K M V Y R H K E F L M V S K F D T G N I K W C . . . . . . 99178 TCTATGGGATAACACATTTAGAAATCACCTATGTAAGTGTGAAGTGTAAGCCGCTTCAAG S M G - H I - K S P M - V - S V S R F K L W D N T F R N H L C K C E V - A A S R I Y G I T H L E I T Y V S V K C K P L Q . . . . . . 99118 GAGAATCCGGTAAGGCCAGTTCTTTAAGCACTTACTATCCAAGATGTGTTCATGGCTGAA E N P V R P V L - A L T I Q D V F M A E R I R - G Q F F K H L L S K M C S W L K G E S G K A S S L S T Y Y P R C V H G - . . . . . . 99058 ACGAACAAAACAATGAGAACTAAGAACAGTTCAAGGGTTGATTGTGTGATATGTTGTCTA T N K T M R T K N S S R V D C V I C C L R T K Q - E L R T V Q G L I V - Y V V - N E Q N N E N - E Q F K G - L C D M L S . . . . . . 98998 GGTATACACCAAAGCTCGACGGTTCAAAGATATCAAATCTACCGATTGACCGAGTATATC G I H Q S S T V Q R Y Q I Y R L T E Y I V Y T K A R R F K D I K S T D - P S I S R Y T P K L D G S K I S N L P I D R V Y . . . . . . 98938 CGATATATGTTCACTACGGAAAGTTTAAAGGTAAACCTACTTATCCAGATGCGATTAACC R Y M F T T E S L K V N L L I Q M R L T D I C S L R K V - R - T Y L S R C D - P P I Y V H Y G K F K G K P T Y P D A I N . . . . . . 98878 TTTACCTACAAGACACACAAGTTTTTTCATGCATATGTTTTAACAATAGCCTTCCCCATT F T Y K T H K F F H A Y V L T I A F P I L P T R H T S F F M H M F - Q - P S P F L Y L Q D T Q V F S C I C F N N S L P H . . . . . . 98818 CATGTGGGGGATTGTTGGGTTTTAGCAAATGTGAATGGGAAAAGAAAAGAGAGAATATGA H V G D C W V L A N V N G K R K E R I - M W G I V G F - Q M - M G K E K R E Y E S C G G L L G F S K C E W E K K R E N M . . . . . . 98758 AAAGTGAGGGAACTACTTTGGAGGGAAAATGAAAAGTCATTTGCAAAGTGCAAATGAAAA K V R E L L W R E N E K S F A K C K - K K - G N Y F G G K M K S H L Q S A N E K K S E G T T L E G K - K V I C K V Q M K . . . 98698 GTCATTTCTTATAAATTTGCA V I S Y K F A S F L I N L S H F L - I C Maximal non-overlapping open reading frames (>= 64 codons): >C10HBa0111D09.1-_PGL-11_AGS-2_PPS_1 (99091 98759) (frame '1'; 330 bp, 110 residues) 1 ALTIQDVFMA ETNKTMRTKN SSRVDCVICC LGIHQSSTVQ RYQIYRLTEY IRYMFTTESL 61 KVNLLIQMRL TFTYKTHKFF HAYVLTIAFP IHVGDCWVLA NVNGKRKERI - AGS-3 (100485 101031) SCR (e 0.835) Exon 1 100485 101031 ( 547 n); score: 0.835 PGS (100485 101031) SGN-E395967- 3-phase translation of AGS-3 (+strand): . . . . . . 100485 CCATAAAGTGACTTAATAAGTTTGCACACTTTCTTTTCTTTACCAGGAACTACAAAACCC P - S D L I S L H T F F S L P G T T K P H K V T - - V C T L S F L Y Q E L Q N P I K - L N K F A H F L F F T R N Y K T . . . . . . 100545 TCAGGCTGTTCTATGTAAATTTCCTCTTCAAGCTCTCCATTTAAGAAGGCTGTTTTTACA S G C S M - I S S S S S P F K K A V F T Q A V L C K F P L Q A L H L R R L F L H L R L F Y V N F L F K L S I - E G C F Y . . . . . . 100605 TCCATTTGATGAATTTCAAGACCGTATACTGCAGCTAGTGCAATAAACATCCGAATTGAT S I - - I S R P Y T A A S A I N I R I D P F D E F Q D R I L Q L V Q - T S E L M I H L M N F K T V Y C S - C N K H P N - . . . . . . 100665 GTAATCATAGTCACTGGTGAGTATGTGTCAAAATAATCAAGACTTTCTTTTTGTCTAAAA V I I V T G E Y V S K - S R L S F C L K - S - S L V S M C Q N N Q D F L F V - N C N H S H W - V C V K I I K T F F L S K . . . . . . 100725 CCTTTGACAACAAGTCTTGCTTTATATTTGTCAATAGTTCCATCGTCTTTCATCTTCCTT P L T T S L A L Y L S I V P S S F I F L L - Q Q V L L Y I C Q - F H R L S S S F T F D N K S C F I F V N S S I V F H L P . . . . . . 100785 TTAAAGATCCATTTTGAACCCAAGGGTTTGTTCCCTGAAGGAAGATCAACCAACTCCCAA L K I H F E P K G L F P E G R S T N S Q - R S I L N P R V C S L K E D Q P T P K F K D P F - T Q G F V P - R K I N Q L P . . . . . . 100845 GTATGATTGCTTAAGATTGATTCAATTTCACTATTAACAGCCTCCTTCCAAGAGGATGAG V - L L K I D S I S L L T A S F Q E D E Y D C L R L I Q F H Y - Q P P S K R M S S M I A - D - F N F T I N S L L P R G - . . . . . . 100905 TCACTAGACAACATTGCTTCCTTGAATGTTTGAGGCTCACTTTCAAGAAGAAATGTTACA S L D N I A S L N V - G S L S R R N V T H - T T L L P - M F E A H F Q E E M L Q V T R Q H C F L E C L R L T F K K K C Y . . . . . . 100965 AAATCTGATCCAAATGAAGTAGATGTCTTTTGACGTTTACTGCGTCTTGGACTTTCTTCA K S D P N E V D V F - R L L R L G L S S N L I Q M K - M S F D V Y C V L D F L H K I - S K - S R C L L T F T A S W T F F . 101025 TTTTGTT F C F V I L Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-3 (-strand): . . . . . . 101031 AACAAAATGAAGAAAGTCCAAGACGCAGTAAACGTCAAAAGACATCTACTTCATTTGGAT N K M K K V Q D A V N V K R H L L H L D T K - R K S K T Q - T S K D I Y F I W I Q N E E S P R R S K R Q K T S T S F G . . . . . . 100971 CAGATTTTGTAACATTTCTTCTTGAAAGTGAGCCTCAAACATTCAAGGAAGCAATGTTGT Q I L - H F F L K V S L K H S R K Q C C R F C N I S S - K - A S N I Q G S N V V S D F V T F L L E S E P Q T F K E A M L . . . . . . 100911 CTAGTGACTCATCCTCTTGGAAGGAGGCTGTTAATAGTGAAATTGAATCAATCTTAAGCA L V T H P L G R R L L I V K L N Q S - A - - L I L L E G G C - - - N - I N L K Q S S D S S S W K E A V N S E I E S I L S . . . . . . 100851 ATCATACTTGGGAGTTGGTTGATCTTCCTTCAGGGAACAAACCCTTGGGTTCAAAATGGA I I L G S W L I F L Q G T N P W V Q N G S Y L G V G - S S F R E Q T L G F K M D N H T W E L V D L P S G N K P L G S K W . . . . . . 100791 TCTTTAAAAGGAAGATGAAAGACGATGGAACTATTGACAAATATAAAGCAAGACTTGTTG S L K G R - K T M E L L T N I K Q D L L L - K E D E R R W N Y - Q I - S K T C C I F K R K M K D D G T I D K Y K A R L V . . . . . . 100731 TCAAAGGTTTTAGACAAAAAGAAAGTCTTGATTATTTTGACACATACTCACCAGTGACTA S K V L D K K K V L I I L T H T H Q - L Q R F - T K R K S - L F - H I L T S D Y V K G F R Q K E S L D Y F D T Y S P V T . . . . . . 100671 TGATTACATCAATTCGGATGTTTATTGCACTAGCTGCAGTATACGGTCTTGAAATTCATC - L H Q F G C L L H - L Q Y T V L K F I D Y I N S D V Y C T S C S I R S - N S S M I T S I R M F I A L A A V Y G L E I H . . . . . . 100611 AAATGGATGTAAAAACAGCCTTCTTAAATGGAGAGCTTGAAGAGGAAATTTACATAGAAC K W M - K Q P S - M E S L K R K F T - N N G C K N S L L K W R A - R G N L H R T Q M D V K T A F L N G E L E E E I Y I E . . . . . . 100551 AGCCTGAGGGTTTTGTAGTTCCTGGTAAAGAAAAGAAAGTGTGCAAACTTATTAAGTCAC S L R V L - F L V K K R K C A N L L S H A - G F C S S W - R K E S V Q T Y - V T Q P E G F V V P G K E K K V C K L I K S . 100491 TTTATGG F M L W L Y Maximal non-overlapping open reading frames (>= 64 codons): >C10HBa0111D09.1-_PGL-11_AGS-3_PPS_1 (101029 100487) (frame '0'; 543 bp, 181 residues) 1 QNEESPRRSK RQKTSTSFGS DFVTFLLESE PQTFKEAMLS SDSSSWKEAV NSEIESILSN 61 HTWELVDLPS GNKPLGSKWI FKRKMKDDGT IDKYKARLVV KGFRQKESLD YFDTYSPVTM 121 ITSIRMFIAL AAVYGLEIHQ MDVKTAFLNG ELEEEIYIEQ PEGFVVPGKE KKVCKLIKSL 181 Y AGS-4 (101995 102187) SCR (e 0.907) Exon 1 101995 102187 ( 193 n); score: 0.907 PGS (101995 102187) SGN-E398572+ 3-phase translation of AGS-4 (+strand): . . . . . . 101995 AAGCAAAATCTTTATTCATATTAACTGCAATTACATTGAGTTTGAAAAGGCCATCACTAA K Q N L Y S Y - L Q L H - V - K G H H - S K I F I H I N C N Y I E F E K A I T K A K S L F I L T A I T L S L K R P S L . . . . . . 102055 GGTAGCCTTTTCCTACATACATATCATTTTTGCTTACTACTACTTTATCAGAAACAAATA G S L F L H T Y H F C L L L L Y Q K Q I V A F S Y I H I I F A Y Y Y F I R N K Y R - P F P T Y I S F L L T T T L S E T N . . . . . . 102115 CACATTTAAATCCATTCTTGGTCAGAACTGGAATTGAAACTAAATTCTTTCTCAATTCTG H I - I H S W S E L E L K L N S F S I L T F K S I L G Q N W N - N - I L S Q F W T H L N P F L V R T G I E T K F F L N S . . 102175 GAACATATGAGAC E H M R N I - D G T Y E Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-4 (-strand): . . . . . . 102187 GTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCAGTTCTGACCAAGAAT V S Y V P E L R K N L V S I P V L T K N S H M F Q N - E R I - F Q F Q F - P R M L I C S R I E K E F S F N S S S D Q E . . . . . . 102127 GGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTA G F K C V F V S D K V V V S K N D M Y V D L N V Y L F L I K - - - A K M I C M - W I - M C I C F - - S S S K Q K - Y V C . . . . . . 102067 GGAAAAGGCTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTAATATGAAT G K G Y L S D G L F K L N V I A V N M N E K A T L V M A F S N S M - L Q L I - I R K R L P - - W P F Q T Q C N C S - Y E . . 102007 AAAGATTTTGCTT K D F A K I L L - R F C Maximal non-overlapping open reading frames (>= 64 codons): >C10HBa0111D09.1-_PGL-11_AGS-4_PPS_1 (102187 101996) (frame '1'; 192 bp, 64 residues) 1 VSYVPELRKN LVSIPVLTKN GFKCVFVSDK VVVSKNDMYV GKGYLSDGLF KLNVIAVNMN 61 KDFA PGL 12 (- strand): 104931 101988 AGS-1 (102708 101988) SCR (e 0.952) Exon 1 102708 101988 ( 721 n); score: 0.952 PGS (102708 101988) SGN-E369759- PGS (102560 101988) SGN-E395006- PGS (102536 101988) SGN-E250407- PGS (102504 101988) SGN-E375520- 3-phase translation of AGS-1 (-strand): . . . . . . 102708 TAAGGTTGAGAATCGAAGAGGATAATAAGGCTGCAGAAAAGAGGTCACGTGGTAATTCAG - G - E S K R I I R L Q K R G H V V I Q K V E N R R G - - G C R K E V T W - F S R L R I E E D N K A A E K R S R G N S . . . . . . 102648 CAATATCTGGAGTAAATTTTGTTGAAGAAAATTCCACAAAATTAAAGAAAAGAAAGAAAG Q Y L E - I L L K K I P Q N - R K E R K N I W S K F C - R K F H K I K E K K E S A I S G V N F V E E N S T K L K K R K K . . . . . . 102588 CATCTGTCCAAAAAGCAATCCTCCTAAGAAGAAATTCAATGGAAACTGCTTTAATTGTGG H L S K K Q S S - E E I Q W K L L - L W I C P K S N P P K K K F N G N C F N C G A S V Q K A I L L R R N S M E T A L I V . . . . . . 102528 TAAACATGGTCATAGGGCTAATGAATGCCGGGGTTCTAAGAAGGACAAGAAAAAGAAGGA - T W S - G - - M P G F - E G Q E K E G K H G H R A N E C R G S K K D K K K K D V N M V I G L M N A G V L R R T R K R R . . . . . . 102468 TCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGA S S K L G - I Q R R N G R S L C N A F R Q A N L A E S K G E M D D L C A M L S E I K Q T W L N P K E K W T I S V Q C F Q . . . . . . 102408 ATGTAACTTGGTTGGAAATCCAAGAGAATGGTCGATAGATTCTGGGTGTATCCAAAGGAG M - L G W K S K R M V D R F W V Y P K E C N L V G N P R E W S I D S G C I Q R R N V T W L E I Q E N G R - I L G V S K G . . . . . . 102348 AAATGGACGATCTCTGTGCCAACAAAGAATTATTTTCATCATATACTCCAGCACTTACAG K W T I S V P T K N Y F H H I L Q H L Q N G R S L C Q Q R I I F I I Y S S T Y R E M D D L C A N K E L F S S Y T P A L T . . . . . . 102288 ATGAAAAATTATTTATGGAAAACTCCGTTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCC M K N Y L W K T P L L Q R W K E L A K S - K I I Y G K L R C C K G G R N W Q S P D E K L F M E N S V V A K V E G T G K V . . . . . . 102228 TATTAAAGATGACATCAGGCAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAAT Y - R - H Q A R W - L - I G S H M F Q N I K D D I R Q G G D F E - G L I C S R I L L K M T S G K V V T L N R V S Y V P E . . . . . . 102168 TGAGAAAGAATTTAGTTTCAATTCCAGTTCTGACCAAGAATGGATTTAAATGTGTATTTG - E R I - F Q F Q F - P R M D L N V Y L E K E F S F N S S S D Q E W I - M C I C L R K N L V S I P V L T K N G F K C V F . . . . . . 102108 TTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGGCTACCTTAGTG F L I K - - - A K M I C M - E K A T L V F - - S S S K Q K - Y V C R K R L P - - V S D K V V V S K N D M Y V G K G Y L S . . . . . . 102048 ATGGCCTTTTCAAACTCAATGTAATTGCAGTTAATATGAATAAAGATTTTGCTTCTTCTT M A F S N S M - L Q L I - I K I L L L L W P F Q T Q C N C S - Y E - R F C F F L D G L F K L N V I A V N M N K D F A S S . 101988 A Maximal non-overlapping open reading frames (>= 64 codons): >C10HBa0111D09.1-_PGL-12_AGS-1_PPS_1 (102370 101990) (frame '0'; 381 bp, 127 residues) 1 ILGVSKGEMD DLCANKELFS SYTPALTDEK LFMENSVVAK VEGTGKVLLK MTSGKVVTLN 61 RVSYVPELRK NLVSIPVLTK NGFKCVFVSD KVVVSKNDMY VGKGYLSDGL FKLNVIAVNM 121 NKDFASS >C10HBa0111D09.1-_PGL-12_AGS-1_PPS_2 (102706 102371) (frame '0'; 333 bp, 111 residues) 1 RLRIEEDNKA AEKRSRGNSA ISGVNFVEEN STKLKKRKKA SVQKAILLRR NSMETALIVV 61 NMVIGLMNAG VLRRTRKRRI KQTWLNPKEK WTISVQCFQN VTWLEIQENG R- 3-phase translation of AGS-1 (+strand): . . . . . . 101988 TAAGAAGAAGCAAAATCTTTATTCATATTAACTGCAATTACATTGAGTTTGAAAAGGCCA - E E A K S L F I L T A I T L S L K R P K K K Q N L Y S Y - L Q L H - V - K G H R R S K I F I H I N C N Y I E F E K A . . . . . . 102048 TCACTAAGGTAGCCTTTTCCTACATACATATCATTTTTGCTTACTACTACTTTATCAGAA S L R - P F P T Y I S F L L T T T L S E H - G S L F L H T Y H F C L L L L Y Q K I T K V A F S Y I H I I F A Y Y Y F I R . . . . . . 102108 ACAAATACACATTTAAATCCATTCTTGGTCAGAACTGGAATTGAAACTAAATTCTTTCTC T N T H L N P F L V R T G I E T K F F L Q I H I - I H S W S E L E L K L N S F S N K Y T F K S I L G Q N W N - N - I L S . . . . . . 102168 AATTCTGGAACATATGAGACCCTATTCAAAGTCACCACCTTGCCTGATGTCATCTTTAAT N S G T Y E T L F K V T T L P D V I F N I L E H M R P Y S K S P P C L M S S L I Q F W N I - D P I Q S H H L A - C H L - . . . . . . 102228 AGGACTTTGCCAGTTCCTTCCACCTTTGCAACAACGGAGTTTTCCATAAATAATTTTTCA R T L P V P S T F A T T E F S I N N F S G L C Q F L P P L Q Q R S F P - I I F H - D F A S S F H L C N N G V F H K - F F . . . . . . 102288 TCTGTAAGTGCTGGAGTATATGATGAAAATAATTCTTTGTTGGCACAGAGATCGTCCATT S V S A G V Y D E N N S L L A Q R S S I L - V L E Y M M K I I L C W H R D R P F I C K C W S I - - K - F F V G T E I V H . . . . . . 102348 TCTCCTTTGGATACACCCAGAATCTATCGACCATTCTCTTGGATTTCCAACCAAGTTACA S P L D T P R I Y R P F S W I S N Q V T L L W I H P E S I D H S L G F P T K L H F S F G Y T Q N L S T I L L D F Q P S Y . . . . . . 102408 TTCTGAAAGCATTGCACAGAGATCGTCCATTTCTCCTTTGGATTCAGCCAAGTTTGCTTG F - K H C T E I V H F S F G F S Q V C L S E S I A Q R S S I S P L D S A K F A - I L K A L H R D R P F L L W I Q P S L L . . . . . . 102468 ATCCTTCTTTTTCTTGTCCTTCTTAGAACCCCGGCATTCATTAGCCCTATGACCATGTTT I L L F L V L L R T P A F I S P M T M F S F F F L S F L E P R H S L A L - P C L D P S F S C P S - N P G I H - P Y D H V . . . . . . 102528 ACCACAATTAAAGCAGTTTCCATTGAATTTCTTCTTAGGAGGATTGCTTTTTGGACAGAT T T I K A V S I E F L L R R I A F W T D P Q L K Q F P L N F F L G G L L F G Q M Y H N - S S F H - I S S - E D C F L D R . . . . . . 102588 GCTTTCTTTCTTTTCTTTAATTTTGTGGAATTTTCTTCAACAAAATTTACTCCAGATATT A F F L F F N F V E F S S T K F T P D I L S F F S L I L W N F L Q Q N L L Q I L C F L S F L - F C G I F F N K I Y S R Y . . . . . . 102648 GCTGAATTACCACGTGACCTCTTTTCTGCAGCCTTATTATCCTCTTCGATTCTCAACCTT A E L P R D L F S A A L L S S S I L N L L N Y H V T S F L Q P Y Y P L R F S T L C - I T T - P L F C S L I I L F D S Q P . 102708 A Maximal non-overlapping open reading frames (>= 64 codons): >C10HBa0111D09.1+_PGL-12_AGS-1_PPS_1 (102060 102413) (frame '1'; 351 bp, 117 residues) 1 PFPTYISFLL TTTLSETNTH LNPFLVRTGI ETKFFLNSGT YETLFKVTTL PDVIFNRTLP 61 VPSTFATTEF SINNFSSVSA GVYDENNSLL AQRSSISPLD TPRIYRPFSW ISNQVTF- >C10HBa0111D09.1+_PGL-12_AGS-1_PPS_2 (102414 102707) (frame '1'; 294 bp, 98 residues) 1 KHCTEIVHFS FGFSQVCLIL LFLVLLRTPA FISPMTMFTT IKAVSIEFLL RRIAFWTDAF 61 FLFFNFVEFS STKFTPDIAE LPRDLFSAAL LSSSILNL AGS-2 (104011 102904,102831 102720) SCR (e 0.948 d 0.997 a 0.907,e 0.964) Exon 1 104011 102904 (1108 n); score: 0.948 Intron 1 102903 102832 ( 72 n); Pd: 0.997 Pa: 0.907 Exon 2 102831 102720 ( 112 n); score: 0.964 PGS (103400 102904,102831 102720) SGN-E251204+ PGS (103580 102904,102831 102735) SGN-E261540+ PGS (103614 102904,102831 102810) SGN-E262550+ PGS (103981 103330) SGN-E273518+ PGS (103755 103382) SGN-E241550+ PGS (103982 103394) SGN-E254845+ PGS (104011 103439) SGN-E369760+ PGS (104003 103613) SGN-E262800+ PGS (103946 103623) SGN-E258205+ PGS (104011 103787) SGN-E261310+ 3-phase translation of AGS-2 (-strand): . . . . . . 104011 ACATGTTTCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTTAATCACTG T C F L L K M A I K G S Q F L I F - S L H V S C - K W L - K E V N F - F F N H - M F L A E N G Y K R K S I F D F L I T . . . . . . 103951 AAGATTTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGAC K I F S F S A F I F L S N K I K V S I D R F F L S L H L F F S Q I K S K C R S T E D F F F L C I Y F S L K - N Q S V D R . . . . . . 103891 TGAGTCAGTGTGACTTGTTGCTGTTTACAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACC - V S V T C C C L Q F V E V K E V - G T E S V - L V A V Y S S L K L K K F E V P L S Q C D L L L F T V R - S - R S L R Y . . . . . . 103831 ACTATTTATTTAACAGGTTTAATCTGTTTTATCTTGGGAGAAATTAATCCATAACCTTGG T I Y L T G L I C F I L G E I N P - P W L F I - Q V - S V L S W E K L I H N L G H Y L F N R F N L F Y L G R N - S I T L . . . . . . 103771 GTACAGTGAGGGATTAAATTTCTTAAGGACACACAATAGTTTCAGTGGACTCGGATTAAT V Q - G I K F L K D T Q - F Q W T R I N Y S E G L N F L R T H N S F S G L G L I G T V R D - I S - G H T I V S V D S D - . . . . . . 103711 TCTTCTATTTTAAATTTTTTCTGCTTCATCTTGTTTCTGTTTCTGTTCATTAACTTCATA S S I L N F F C F I L F L F L F I N F I L L F - I F S A S S C F C F C S L T S - F F Y F K F F L L H L V S V S V H - L H . . . . . . 103651 AATACAAGTTATTGTAAGAAGAACAATCTTAAGAAATTTAAACAGTTTCTGTATTTGAGG N T S Y C K K N N L K K F K Q F L Y L R I Q V I V R R T I L R N L N S F C I - G K Y K L L - E E Q S - E I - T V S V F E . . . . . . 103591 TTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCG F L E I K T F M V F Y S A - I F K I H S F W R L K P L W F S T L L E F L K F I R V S G D - N L Y G F L L C L N F - N S F . . . . . . 103531 ATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAAAAACAGTTTGTGTAAAGA I N D - K N I K T L S L N Q K Q F V - R L T I K R T - K L Y R - I K N S L C K D D - R L K E H K N F I V K S K T V C V K . . . . . . 103471 TTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAA F V L Y C - Y F K Y L I Y L P F V T E K L F F T V S I L N T - F I C H L - Q K K I C S L L L V F - I L N L S A I C D R K . . . . . . 103411 AAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTG K - L I Q V K Q M L E Q - V L Q Q Q R L N D - F K S N K C W N S K C C N N N G C K M T N S S Q T N A G T V S A A T T T V . . . . . . 103351 CACATAATCATTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTTTGGAG H I I I Q M L P - H R L R N L Q S F L E T - S F K C C L S T G - E T C K V F W S A H N H S N A A L A P A E K P A K F F G . . . . . . 103291 TCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGA S T L R D G S K R C S S I S L R - V C R R L - E M A A K D V L L S H Y V E S A E V D F K R W Q Q K M F F Y L T T L S L Q . . . . . . 103231 AGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCT S S S M R M F L L C Q M K L R L M N D S V H Q - E C S C Y V R - N S G - - T I L K F I N E N V P V M S D E T P A D E R F . . . . . . 103171 TGGTAACAGAAGCATGGACACACTCTGATTTTTTTGTGTAAAAATTATATTTTGAGTGGT W - Q K H G H T L I F L C K N Y I L S G G N R S M D T L - F F C V K I I F - V V L V T E A W T H S D F F V - K L Y F E W . . . . . . 103111 CTGCAAGATGATCTGTACAATGTGTACAGCAATGCAAAAACCTCAAAAGAACTCTGGGAT L Q D D L Y N V Y S N A K T S K E L W D C K M I C T M C T A M Q K P Q K N S G M S A R - S V Q C V Q Q C K N L K R T L G . . . . . . 103051 GCTTTAGAAAAGAAGTACAAAACAGAAGATGTCGGAATGAAGAAATTCATTGTGGCAAAA A L E K K Y K T E D V G M K K F I V A K L - K R S T K Q K M S E - R N S L W Q N C F R K E V Q N R R C R N E E I H C G K . . . . . . 102991 TTTCTGGACTTTAAGATGATAGACAGTAAGTCTGTCGTCACCCAAGTTCAAGAATTGCAG F L D F K M I D S K S V V T Q V Q E L Q F W T L R - - T V S L S S P K F K N C R I S G L - D D R Q - V C R H P S S R I A . . . : . . . 102931 GTCATAATCCATGATCTCCTTGCTGAAG : GATTGATTGTGAATGATGTTTTTCAAGTGGCT V I I H D L L A E : G L I V N D V F Q V A S - S M I S L L K : D - L - M M F F K W L G H N P - S P C - R : I D C E - C F S S G . . . . . . 102799 GCAATTATTGAAAAGTTATCTCCATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAA A I I E K L S P L W K D F K N Y L K H K Q L L K S Y L H C G R T L K T T - N T N C N Y - K V I S I V E G L - K L L E T Q . . 102739 CGCAAGGAGATGACTGTTGA R K E M T V A R R - L L T Q G D D C - Maximal non-overlapping open reading frames (>= 64 codons): >C10HBa0111D09.1-_PGL-12_AGS-2_PPS_1 (103165 102904,102831 102722) (frame '1'; 372 bp, 124 residues) 1 QKHGHTLIFL CKNYILSGLQ DDLYNVYSNA KTSKELWDAL EKKYKTEDVG MKKFIVAKFL 61 DFKMIDSKSV VTQVQELQVI IHDLLAEGLI VNDVFQVAAI IEKLSPLWKD FKNYLKHKRK 121 EMTV AGS-3 (104031 103837,103416 102853) SCR (e 0.859 d 0.648 a 0.966,e 0.920) Exon 1 104031 103837 ( 195 n); score: 0.859 Intron 1 103836 103417 ( 420 n); Pd: 0.648 Pa: 0.966 Exon 2 103416 102853 ( 564 n); score: 0.920 PGS (104031 103837,103416 102853) SGN-E542858- 3-phase translation of AGS-3 (-strand): . . . . . . 104031 GAATAGATTTCACTGAACACACATGTTTCTTGCTGAAAATGGCTATAAAAGGAAGTCAAT E - I S L N T H V S C - K W L - K E V N N R F H - T H M F L A E N G Y K R K S I I D F T E H T C F L L K M A I K G S Q . . . . . . 103971 TTTTGATTTTTTAATCACTGAAGATTTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATA F - F F N H - R F F L S L H L F F S Q I F D F L I T E D F F F L C I Y F S L K - F L I F - S L K I F S F S A F I F L S N . . . . . . 103911 AAATCAAAGTGTCGATCGACTGAGTCAGTGTGACTTGTTGCTGTTTACAGTTCGTTGAAG K S K C R S T E S V - L V A V Y S S L K N Q S V D R L S Q C D L L L F T V R - S K I K V S I D - V S V T C C C L Q F V E . . : . . . . 103851 TTAAAGAAGTTTGAG : AAAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAG L K K F E : K K N D - F K S N K C W N S K - R S L R : K K M T N S S Q T N A G T V S V K E V - : E K K - L I Q V K Q M L E Q - . . . . . . 103371 TGCTGCAACAACAACGGTTGCACATAATCATTCAAATGCTGCCTTAGCACCGGCTGAGAA C C N N N G C T - S F K C C L S T G - E A A T T T V A H N H S N A A L A P A E K V L Q Q Q R L H I I I Q M L P - H R L R . . . . . . 103311 ACCTGCAAAGTTTTTTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCT T C K V F W S R L - E M A A K D V L L S P A K F F G V D F K R W Q Q K M F F Y L N L Q S F L E S T L R D G S K R C S S I . . . . . . 103251 CACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAAC H Y V E S A E V H Q - E C S C Y V R - N T T L S L Q K F I N E N V P V M S D E T S L R - V C R S S S M R M F L L C Q M K . . . . . . 103191 TCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCTGATTTTTTTGTGTA S G - - T I L G N R S M D T L - F F C V P A D E R F L V T E A W T H S D F F V - L R L M N D S W - Q K H G H T L I F L C . . . . . . 103131 AAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGCAAAAA K I I F - V V C K M I C T M C T A M Q K K L Y F E W S A R - S V Q C V Q Q C K N K N Y I L S G L Q D D L Y N V Y S N A K . . . . . . 103071 CCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGTCGGAATGA P Q K N S G M L - K R S T K Q K M S E - L K R T L G C F R K E V Q N R R C R N E T S K E L W D A L E K K Y K T E D V G M . . . . . . 103011 AGAAATTCATTGTGGCAAAATTTCTGGACTTTAAGATGATAGACAGTAAGTCTGTCGTCA R N S L W Q N F W T L R - - T V S L S S E I H C G K I S G L - D D R Q - V C R H K K F I V A K F L D F K M I D S K S V V . . . . . . 102951 CCCAAGTTCAAGAATTGCAGGTCATAATCCATGATCTCCTTGCTGAAGGTATAAATTTAT P K F K N C R S - S M I S L L K V - I Y P S S R I A G H N P - S P C - R Y K F I T Q V Q E L Q V I I H D L L A E G I N L . . . . 102891 TTAATGCCTATGTTAGAAATATTAAGTTTTCCCTTAATA L M P M L E I L S F P L I - C L C - K Y - V F P - F N A Y V R N I K F S L N Maximal non-overlapping open reading frames (>= 64 codons): >C10HBa0111D09.1-_PGL-12_AGS-3_PPS_1 (103165 102854) (frame '0'; 312 bp, 104 residues) 1 QKHGHTLIFL CKNYILSGLQ DDLYNVYSNA KTSKELWDAL EKKYKTEDVG MKKFIVAKFL 61 DFKMIDSKSV VTQVQELQVI IHDLLAEGIN LFNAYVRNIK FSLN >C10HBa0111D09.1-_PGL-12_AGS-3_PPS_2 (103847 103837,103416 103131) (frame '2'; 294 bp, 98 residues) 1 RSLRKKMTNS SQTNAGTVSA ATTTVAHNHS NAALAPAEKP AKFFGVDFKR WQQKMFFYLT 61 TLSLQKFINE NVPVMSDETP ADERFLVTEA WTHSDFFV- AGS-4 (104931 104905,104327 104193) SCR (e 0.704 d 0.900 a 0.000,e 0.910) Exon 1 104931 104905 ( 27 n); score: 0.704 Intron 1 104904 104328 ( 577 n); Pd: 0.900 Pa: 0.000 Exon 2 104327 104193 ( 135 n); score: 0.910 PGS (104332 104193) SGN-E542859+ PGS (104931 104905,104327 104195) SGN-E395007+ PGS (104931 104905,104327 104195) SGN-E250408+ PGS (104931 104905,104327 104195) SGN-E250410+ 3-phase translation of AGS-4 (-strand): . . . : . . . 104931 TTGTTAATGGATCAAATCCATAAGTTA : TGGGTGTGTTGGGTTTTAGCAAGTGTGAATGGG L L M D Q I H K L : W V C W V L A S V N G C - W I K S I S Y : G C V G F - Q V - M G V N G S N P - V : M G V L G F S K C E W . . . . . . 104294 AAAAGAAAAGAGAGAATATGACAAGTGAGGGAACTACTTTGGAGGGAAAATGAAAAGTCA K R K E R I - Q V R E L L W R E N E K S K E K R E Y D K - G N Y F G G K M K S H E K K R E N M T S E G T T L E G K - K V . . . . . 104234 TTTGCAAAGTGCAAATGAAAAGTCATTTCTTATAAATTTGCA F A K C K - K V I S Y K F A L Q S A N E K S F L I N L I C K V Q M K S H F L - I C Maximal non-overlapping open reading frames (>= 64 codons): none PGL 13 (+ strand): 103115 104525 AGS-1 (103115 104011) SCR (e 0.941) Exon 1 103115 104011 ( 897 n); score: 0.941 PGS (103115 103726) SGN-E253427- PGS (103138 103842) SGN-E261066- PGS (103170 103614) SGN-E258047- PGS (103177 103881) SGN-E263584- PGS (103208 103841) SGN-E276669- PGS (103410 104011) SGN-E262710- PGS (103502 104011) SGN-E255327- PGS (103539 103726) SGN-E375521- PGS (103625 103756) SGN-E228046- 3-phase translation of AGS-1 (+strand): . . . . . . 103115 ACTCAAAATATAATTTTTACACAAAAAAATCAGAGTGTGTCCATGCTTCTGTTACCAAGA T Q N I I F T Q K N Q S V S M L L L P R L K I - F L H K K I R V C P C F C Y Q E S K Y N F Y T K K S E C V H A S V T K . . . . . . 103175 ATCGTTCATCAGCCGGAGTTTCATCTGACATAACAGGAACATTCTCATTGATGAACTTCT I V H Q P E F H L T - Q E H S H - - T S S F I S R S F I - H N R N I L I D E L L N R S S A G V S S D I T G T F S L M N F . . . . . . 103235 GCAGACTCAACGTAGTGAGATAGAAGAACATCTTTTGCTGCCATCTCTTAAAGTCGACTC A D S T - - D R R T S F A A I S - S R L Q T Q R S E I E E H L L L P S L K V D S C R L N V V R - K N I F C C H L L K S T . . . . . . 103295 CAAAAAACTTTGCAGGTTTCTCAGCCGGTGCTAAGGCAGCATTTGAATGATTATGTGCAA Q K T L Q V S Q P V L R Q H L N D Y V Q K K L C R F L S R C - G S I - M I M C N P K N F A G F S A G A K A A F E - L C A . . . . . . 103355 CCGTTGTTGTTGCAGCACTTACTGTTCCAGCATTTGTTTGACTTGAATTAGTCATTTTTT P L L L Q H L L F Q H L F D L N - S F F R C C C S T Y C S S I C L T - I S H F F T V V V A A L T V P A F V - L E L V I F . . . . . . 103415 TTCTGTCACAAATGGCAGATAAATTAAGTATTTAAAATACTAACAGTAAAGAACAAATCT F C H K W Q I N - V F K I L T V K N K S S V T N G R - I K Y L K Y - Q - R T N L F L S Q M A D K L S I - N T N S K E Q I . . . . . . 103475 TTACACAAACTGTTTTTGATTTAACGATAAAGTTTTTATGTTCTTTTAATCGTTAATCGA L H K L F L I - R - S F Y V L L I V N R Y T N C F - F N D K V F M F F - S L I E F T Q T V F D L T I K F L C S F N R - S . . . . . . 103535 ATGAATTTTAAAAATTCAAGCAGAGTAGAAAACCATAAAGGTTTTAATCTCCAGAAACCT M N F K N S S R V E N H K G F N L Q K P - I L K I Q A E - K T I K V L I S R N L N E F - K F K Q S R K P - R F - S P E T . . . . . . 103595 CAAATACAGAAACTGTTTAAATTTCTTAAGATTGTTCTTCTTACAATAACTTGTATTTAT Q I Q K L F K F L K I V L L T I T C I Y K Y R N C L N F L R L F F L Q - L V F M S N T E T V - I S - D C S S Y N N L Y L . . . . . . 103655 GAAGTTAATGAACAGAAACAGAAACAAGATGAAGCAGAAAAAATTTAAAATAGAAGAATT E V N E Q K Q K Q D E A E K I - N R R I K L M N R N R N K M K Q K K F K I E E L - S - - T E T E T R - S R K N L K - K N . . . . . . 103715 AATCCGAGTCCACTGAAACTATTGTGTGTCCTTAAGAAATTTAATCCCTCACTGTACCCA N P S P L K L L C V L K K F N P S L Y P I R V H - N Y C V S L R N L I P H C T Q - S E S T E T I V C P - E I - S L T V P . . . . . . 103775 AGGTTATGGATTAATTTCTCCCAAGATAAAACAGATTAAACCTGTTAAATAAATAGTGGT R L W I N F S Q D K T D - T C - I N S G G Y G L I S P K I K Q I K P V K - I V V K V M D - F L P R - N R L N L L N K - W . . . . . . 103835 ACCTCAAACTTCTTTAACTTCAACGAACTGTAAACAGCAACAAGTCACACTGACTCAGTC T S N F F N F N E L - T A T S H T D S V P Q T S L T S T N C K Q Q Q V T L T Q S Y L K L L - L Q R T V N S N K S H - L S . . . . . . 103895 GATCGACACTTTGATTTTATTTGAGAGAAAAATAAATGCAGAGAAAGAAAAAATCTTCAG D R H F D F I - E K N K C R E R K N L Q I D T L I L F E R K I N A E K E K I F S R S T L - F Y L R E K - M Q R K K K S S . . . . . . 103955 TGATTAAAAAATCAAAAATTGACTTCCTTTTATAGCCATTTTCAGCAAGAAACATGT - L K N Q K L T S F Y S H F Q Q E T C D - K I K N - L P F I A I F S K K H V I K K S K I D F L L - P F S A R N M Maximal non-overlapping open reading frames (>= 64 codons): >C10HBa0111D09.1+_PGL-13_AGS-1_PPS_1 (103505 103702) (frame '1'; 195 bp, 65 residues) 1 SFYVLLIVNR MNFKNSSRVE NHKGFNLQKP QIQKLFKFLK IVLLTITCIY EVNEQKQKQD 61 EAEKI- 3-phase translation of AGS-1 (-strand): . . . . . . 104011 ACATGTTTCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTTAATCACTG T C F L L K M A I K G S Q F L I F - S L H V S C - K W L - K E V N F - F F N H - M F L A E N G Y K R K S I F D F L I T . . . . . . 103951 AAGATTTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGAC K I F S F S A F I F L S N K I K V S I D R F F L S L H L F F S Q I K S K C R S T E D F F F L C I Y F S L K - N Q S V D R . . . . . . 103891 TGAGTCAGTGTGACTTGTTGCTGTTTACAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACC - V S V T C C C L Q F V E V K E V - G T E S V - L V A V Y S S L K L K K F E V P L S Q C D L L L F T V R - S - R S L R Y . . . . . . 103831 ACTATTTATTTAACAGGTTTAATCTGTTTTATCTTGGGAGAAATTAATCCATAACCTTGG T I Y L T G L I C F I L G E I N P - P W L F I - Q V - S V L S W E K L I H N L G H Y L F N R F N L F Y L G R N - S I T L . . . . . . 103771 GTACAGTGAGGGATTAAATTTCTTAAGGACACACAATAGTTTCAGTGGACTCGGATTAAT V Q - G I K F L K D T Q - F Q W T R I N Y S E G L N F L R T H N S F S G L G L I G T V R D - I S - G H T I V S V D S D - . . . . . . 103711 TCTTCTATTTTAAATTTTTTCTGCTTCATCTTGTTTCTGTTTCTGTTCATTAACTTCATA S S I L N F F C F I L F L F L F I N F I L L F - I F S A S S C F C F C S L T S - F F Y F K F F L L H L V S V S V H - L H . . . . . . 103651 AATACAAGTTATTGTAAGAAGAACAATCTTAAGAAATTTAAACAGTTTCTGTATTTGAGG N T S Y C K K N N L K K F K Q F L Y L R I Q V I V R R T I L R N L N S F C I - G K Y K L L - E E Q S - E I - T V S V F E . . . . . . 103591 TTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCG F L E I K T F M V F Y S A - I F K I H S F W R L K P L W F S T L L E F L K F I R V S G D - N L Y G F L L C L N F - N S F . . . . . . 103531 ATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAAAAACAGTTTGTGTAAAGA I N D - K N I K T L S L N Q K Q F V - R L T I K R T - K L Y R - I K N S L C K D D - R L K E H K N F I V K S K T V C V K . . . . . . 103471 TTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAA F V L Y C - Y F K Y L I Y L P F V T E K L F F T V S I L N T - F I C H L - Q K K I C S L L L V F - I L N L S A I C D R K . . . . . . 103411 AAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTG K - L I Q V K Q M L E Q - V L Q Q Q R L N D - F K S N K C W N S K C C N N N G C K M T N S S Q T N A G T V S A A T T T V . . . . . . 103351 CACATAATCATTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTTTGGAG H I I I Q M L P - H R L R N L Q S F L E T - S F K C C L S T G - E T C K V F W S A H N H S N A A L A P A E K P A K F F G . . . . . . 103291 TCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGA S T L R D G S K R C S S I S L R - V C R R L - E M A A K D V L L S H Y V E S A E V D F K R W Q Q K M F F Y L T T L S L Q . . . . . . 103231 AGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCT S S S M R M F L L C Q M K L R L M N D S V H Q - E C S C Y V R - N S G - - T I L K F I N E N V P V M S D E T P A D E R F . . . . . . 103171 TGGTAACAGAAGCATGGACACACTCTGATTTTTTTGTGTAAAAATTATATTTTGAGT W - Q K H G H T L I F L C K N Y I L S G N R S M D T L - F F C V K I I F - L V T E A W T H S D F F V - K L Y F E Maximal non-overlapping open reading frames (>= 64 codons): >C10HBa0111D09.1-_PGL-13_AGS-1_PPS_1 (103445 103131) (frame '0'; 312 bp, 104 residues) 1 ILNLSAICDR KKMTNSSQTN AGTVSAATTT VAHNHSNAAL APAEKPAKFF GVDFKRWQQK 61 MFFYLTTLSL QKFINENVPV MSDETPADER FLVTEAWTHS DFFV- AGS-2 (103184 103529,103670 103709) SCR (e 0.790 d 0.000 a 0.926,e 0.650) Exon 1 103184 103529 ( 346 n); score: 0.790 Intron 1 103530 103669 ( 140 n); Pd: 0.000 Pa: 0.926 Exon 2 103670 103709 ( 40 n); score: 0.650 PGS (103184 103529,103670 103709) SGN-E553348+ 3-phase translation of AGS-2 (+strand): . . . . . . 103184 CAGCCGGAGTTTCATCTGACATAACAGGAACATTCTCATTGATGAACTTCTGCAGACTCA Q P E F H L T - Q E H S H - - T S A D S S R S F I - H N R N I L I D E L L Q T Q A G V S S D I T G T F S L M N F C R L . . . . . . 103244 ACGTAGTGAGATAGAAGAACATCTTTTGCTGCCATCTCTTAAAGTCGACTCCAAAAAACT T - - D R R T S F A A I S - S R L Q K T R S E I E E H L L L P S L K V D S K K L N V V R - K N I F C C H L L K S T P K N . . . . . . 103304 TTGCAGGTTTCTCAGCCGGTGCTAAGGCAGCATTTGAATGATTATGTGCAACCGTTGTTG L Q V S Q P V L R Q H L N D Y V Q P L L C R F L S R C - G S I - M I M C N R C C F A G F S A G A K A A F E - L C A T V V . . . . . . 103364 TTGCAGCACTTACTGTTCCAGCATTTGTTTGACTTGAATTAGTCATTTTTTTTCTGTCAC L Q H L L F Q H L F D L N - S F F F C H C S T Y C S S I C L T - I S H F F S V T V A A L T V P A F V - L E L V I F F L S . . . . . . 103424 AAATGGCAGATAAATTAAGTATTTAAAATACTAACAGTAAAGAACAAATCTTTACACAAA K W Q I N - V F K I L T V K N K S L H K N G R - I K Y L K Y - Q - R T N L Y T N Q M A D K L S I - N T N S K E Q I F T Q . . . . . : . 103484 CTGTTTTTGATTTAACGATAAAGTTTTTATGTTCTTTTAATCGTTA : AAACAGAAACAAGA L F L I - R - S F Y V L L I V : K T E T R C F - F N D K V F M F F - S L : K Q K Q D T V F D L T I K F L C S F N R - : N R N K . . . 103684 TGAAGCAGAAAAAATTTAAAATAGAA - S R K N L K - E A E K I - N R M K Q K K F K I E Maximal non-overlapping open reading frames (>= 64 codons): none AGS-3 (103243 103301,103344 103733) SCR (e 0.932 d 0.000 a 0.000,e 0.869) Exon 1 103243 103301 ( 59 n); score: 0.932 Intron 1 103302 103343 ( 42 n); Pd: 0.000 Pa: 0.000 Exon 2 103344 103733 ( 390 n); score: 0.869 PGS (103243 103301,103344 103733) SGN-E236009- 3-phase translation of AGS-3 (+strand): . . . . . . : 103243 AACGTAGTGAGATAGAAGAACATCTTTTGCTGCCATCTCTTAAAGTCGACTCCAAAAAA : A N V V R - K N I F C C H L L K S T P K K : T - - D R R T S F A A I S - S R L Q K : N R S E I E E H L L L P S L K V D S K K : . . . . . . 103345 TTATGTGCAACCGTTGTTGTTGCAGCACTTACTGTTCCAGCATTTGTTTGACTTGAATTA L C A T V V V A A L T V P A F V - L E L Y V Q P L L L Q H L L F Q H L F D L N - I M C N R C C C S T Y C S S I C L T - I . . . . . . 103405 GTCATTTTTTTTCTGTCACAAATGGCAGATAAATTAAGTATTTAAAATACTAACAGTAAA V I F F L S Q M A D K L S I - N T N S K S F F F C H K W Q I N - V F K I L T V K S H F F S V T N G R - I K Y L K Y - Q - . . . . . . 103465 GAACAAATCTTTACACAAACTGTTTTTGATTTAACGATAAAGTTTTTATGTTCTTTTAAT E Q I F T Q T V F D L T I K F L C S F N N K S L H K L F L I - R - S F Y V L L I R T N L Y T N C F - F N D K V F M F F - . . . . . . 103525 CGTTAATCGAATGAATTTTAAAAATTCAAGCAGAGTAGAAAACCATAAAGGTTTTAATCT R - S N E F - K F K Q S R K P - R F - S V N R M N F K N S S R V E N H K G F N L S L I E - I L K I Q A E - K T I K V L I . . . . . . 103585 CCAGAAACCTCAAATACAGAAACTGTTTAAATTTCTTAAGATTGTTCTTCTTACAATAAC P E T S N T E T V - I S - D C S S Y N N Q K P Q I Q K L F K F L K I V L L T I T S R N L K Y R N C L N F L R L F F L Q - . . . . . . 103645 TTGTATTTATGAAGTTAATGAACAGAAACAGAAACAAGATGAAGCAGAAAAAATTTAAAA L Y L - S - - T E T E T R - S R K N L K C I Y E V N E Q K Q K Q D E A E K I - N L V F M K L M N R N R N K M K Q K K F K . . . 103705 TAGAAGAATTAATCCGAGTCCACTGAAAC - K N - S E S T E R R I N P S P L K I E E L I R V H - N Maximal non-overlapping open reading frames (>= 64 codons): >C10HBa0111D09.1+_PGL-13_AGS-3_PPS_1 (103505 103702) (frame '2'; 195 bp, 65 residues) 1 SFYVLLIVNR MNFKNSSRVE NHKGFNLQKP QIQKLFKFLK IVLLTITCIY EVNEQKQKQD 61 EAEKI- AGS-4 (103258 103449,104494 104525) SCR (e 0.948 d 0.000 a 0.000,e 0.719) Exon 1 103258 103449 ( 192 n); score: 0.948 Intron 1 103450 104493 (1044 n); Pd: 0.000 Pa: 0.000 Exon 2 104494 104525 ( 32 n); score: 0.719 PGS (103258 103449,104494 104525) SGN-E396239- 3-phase translation of AGS-4 (+strand): . . . . . . 103258 AAGAACATCTTTTGCTGCCATCTCTTAAAGTCGACTCCAAAAAACTTTGCAGGTTTCTCA K N I F C C H L L K S T P K N F A G F S R T S F A A I S - S R L Q K T L Q V S Q E H L L L P S L K V D S K K L C R F L . . . . . . 103318 GCCGGTGCTAAGGCAGCATTTGAATGATTATGTGCAACCGTTGTTGTTGCAGCACTTACT A G A K A A F E - L C A T V V V A A L T P V L R Q H L N D Y V Q P L L L Q H L L S R C - G S I - M I M C N R C C C S T Y . . . . . . 103378 GTTCCAGCATTTGTTTGACTTGAATTAGTCATTTTTTTTCTGTCACAAATGGCAGATAAA V P A F V - L E L V I F F L S Q M A D K F Q H L F D L N - S F F F C H K W Q I N C S S I C L T - I S H F F S V T N G R - . . : . . . 103438 TTAAGTATTTAA : CTCAATTGTTTTTCTTTTGTTTTCTAGTAACC L S I - : L N C F S F V F - - - V F N : S I V F L L F S S N I K Y L : T Q L F F F C F L V T Maximal non-overlapping open reading frames (>= 64 codons): none PGL 14 (+ strand): 108647 109264 AGS-1 (108647 109264) SCR (e 0.831) Exon 1 108647 109264 ( 618 n); score: 0.831 PGS (108647 109264) SGN-E380050- PGS (108647 108773) SGN-E379349+ 3-phase translation of AGS-1 (+strand): . . . . . . 108647 ATTGTGTGAGCCGTCAAAATGGGCTTGGCCCACAAGGCCGGCCCAACCCAACCCTTGAAA I V - A V K M G L A H K A G P T Q P L K L C E P S K W A W P T R P A Q P N P - N C V S R Q N G L G P Q G R P N P T L E . . . . . . 108707 TAAGTGGGGTTGGGCTTAATATTTTTGGCCCATTTACGAATGAGGCTTTTTAGCCCGCCC - V G L G L I F L A H L R M R L F S P P K W G W A - Y F W P I Y E - G F L A R P I S G V G L N I F G P F T N E A F - P A . . . . . . 108767 CATTTGGTTTGTTGGCCTCTTAGCCCAACCCGCAAGCCTTAGATGCCAGCCCGTGGGCTA H L V C W P L S P T R K P - M P A R G L I W F V G L L A Q P A S L R C Q P V G Y P F G L L A S - P N P Q A L D A S P W A . . . . . . 108827 TTAATATTTTAAAATATTTTTATATATATTTTTAATAATGTTTTATTTGTAAAGATTTTA L I F - N I F I Y I F N N V L F V K I L - Y F K I F L Y I F L I M F Y L - R F Y I N I L K Y F Y I Y F - - C F I C K D F . . . . . . 108887 TGAATAAATATTTTGAATAATAAAAAATCAAGTATTTTGAAATATCATCTTACATGGTAA - I N I L N N K K S S I L K Y H L T W - E - I F - I I K N Q V F - N I I L H G K M N K Y F E - - K I K Y F E I S S Y M V . . . . . . 108947 ACTGTAGATGAAGATGAACTTCTTAATAAAATAATATCATACATTGATTCAAATGTGATC T V D E D E L L N K I I S Y I D S N V I L - M K M N F L I K - Y H T L I Q M - S N C R - R - T S - - N N I I H - F K C D . . . . . . 109007 GATAGTTGAAGTAGAAGCGGAGTTATAAAACATTAATTAATGAGTCATGTAATATTTAGA D S - S R S G V I K H - L M S H V I F R I V E V E A E L - N I N - - V M - Y L E R - L K - K R S Y K T L I N E S C N I - . . . . . . 109067 AATTTAGATTTGTCAAGTATTTAGGTTGTCTTGTGTTGCTGGAAATCTTTTAAACCAGCT N L D L S S I - V V L C C W K S F K P A I - I C Q V F R L S C V A G N L L N Q L K F R F V K Y L G C L V L L E I F - T S . . . . . . 109127 AGTTTTTTGTGGGAGAAATGATGGAATCAACATTTGTCTACTAAATCTTACGTTGACTAT S F L W E K - W N Q H L S T K S Y V D Y V F C G R N D G I N I C L L N L T L T I - F F V G E M M E S T F V Y - I L R - L . . . . . . 109187 TATGTATTTTTTTAAGTATTCACCAAAGTGTGTGATTCATAAATGTATTTTTGTAAGTAT Y V F F - V F T K V C D S - M Y F C K Y M Y F F K Y S P K C V I H K C I F V S I L C I F L S I H Q S V - F I N V F L - V . . 109247 TCATTGAAGCGTGTGATT S L K R V I H - S V - F I E A C D Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 109264 AATCACACGCTTCAATGAATACTTACAAAAATACATTTATGAATCACACACTTTGGTGAA N H T L Q - I L T K I H L - I T H F G E I T R F N E Y L Q K Y I Y E S H T L V N S H A S M N T Y K N T F M N H T L W - . . . . . . 109204 TACTTAAAAAAATACATAATAGTCAACGTAAGATTTAGTAGACAAATGTTGATTCCATCA Y L K K Y I I V N V R F S R Q M L I P S T - K N T - - S T - D L V D K C - F H H I L K K I H N S Q R K I - - T N V D S I . . . . . . 109144 TTTCTCCCACAAAAAACTAGCTGGTTTAAAAGATTTCCAGCAACACAAGACAACCTAAAT F L P Q K T S W F K R F P A T Q D N L N F S H K K L A G L K D F Q Q H K T T - I I S P T K N - L V - K I S S N T R Q P K . . . . . . 109084 ACTTGACAAATCTAAATTTCTAAATATTACATGACTCATTAATTAATGTTTTATAACTCC T - Q I - I S K Y Y M T H - L M F Y N S L D K S K F L N I T - L I N - C F I T P Y L T N L N F - I L H D S L I N V L - L . . . . . . 109024 GCTTCTACTTCAACTATCGATCACATTTGAATCAATGTATGATATTATTTTATTAAGAAG A S T S T I D H I - I N V - Y Y F I K K L L L Q L S I T F E S M Y D I I L L R S R F Y F N Y R S H L N Q C M I L F Y - E . . . . . . 108964 TTCATCTTCATCTACAGTTTACCATGTAAGATGATATTTCAAAATACTTGATTTTTTATT F I F I Y S L P C K M I F Q N T - F F I S S S S T V Y H V R - Y F K I L D F L L V H L H L Q F T M - D D I S K Y L I F Y . . . . . . 108904 ATTCAAAATATTTATTCATAAAATCTTTACAAATAAAACATTATTAAAAATATATATAAA I Q N I Y S - N L Y K - N I I K N I Y K F K I F I H K I F T N K T L L K I Y I K Y S K Y L F I K S L Q I K H Y - K Y I - . . . . . . 108844 AATATTTTAAAATATTAATAGCCCACGGGCTGGCATCTAAGGCTTGCGGGTTGGGCTAAG N I L K Y - - P T G W H L R L A G W A K I F - N I N S P R A G I - G L R V G L R K Y F K I L I A H G L A S K A C G L G - . . . . . . 108784 AGGCCAACAAACCAAATGGGGCGGGCTAAAAAGCCTCATTCGTAAATGGGCCAAAAATAT R P T N Q M G R A K K P H S - M G Q K Y G Q Q T K W G G L K S L I R K W A K N I E A N K P N G A G - K A S F V N G P K I . . . . . . 108724 TAAGCCCAACCCCACTTATTTCAAGGGTTGGGTTGGGCCGGCCTTGTGGGCCAAGCCCAT - A Q P H L F Q G L G W A G L V G Q A H K P N P T Y F K G W V G P A L W A K P I L S P T P L I S R V G L G R P C G P S P . . 108664 TTTGACGGCTCACACAAT F D G S H N L T A H T F - R L T Q Maximal non-overlapping open reading frames (>= 64 codons): none PGL 15 (- strand): 121845 116288 AGS-1 (121845 121664,116809 116288) SCR (e 1.000 d 0.484 a 0.998,e 0.995) Exon 1 121845 121664 ( 182 n); score: 1.000 Intron 1 121663 116810 (4854 n); Pd: 0.484 Pa: 0.998 Exon 2 116809 116288 ( 522 n); score: 0.995 PGS (116808 116288) SGN-E355123+ PGS (116773 116336) SGN-E295805+ PGS (116805 116366) SGN-E356809+ PGS (116780 116383) SGN-E221912- PGS (116701 116383) SGN-E221509- PGS (121832 121664,116809 116428) SGN-E336498+ PGS (121836 121664,116809 116430) SGN-E276014+ PGS (121832 121664,116809 116450) SGN-E321761+ PGS (116796 116512) SGN-E295804+ PGS (121845 121664,116809 116581) SGN-E335737+ 3-phase translation of AGS-1 (-strand): . . . . . . 121845 GAAGTAGGGTAACTGAAATCGAATTGTAGCAGTAAGAATGCCGTTGAAGGTGTTGGACGC E V G - L K S N C S S K N A V E G V G R K - G N - N R I V A V R M P L K V L D A S R V T E I E L - Q - E C R - R C W T . . . . . . 121785 AACCATAACAACTTTTGATGGAGTTTTTGAAAAGTTTAAAGCAGAGTCGCCCAAAAACAA N H N N F - W S F - K V - S R V A Q K Q T I T T F D G V F E K F K A E S P K N K Q P - Q L L M E F L K S L K Q S R P K T . . . . . . 121725 AGCCAATTTCATCCTGTTCCTGGCTGATATAGACCCTTCTACCAACCTTAGTTGGTGCCC S Q F H P V P G - Y R P F Y Q P - L V P A N F I L F L A D I D P S T N L S W C P K P I S S C S W L I - T L L P T L V G A . : . . . . . 121665 TG : ATTGTGTAAGAGCTGAACCTGTGATATACAAGAAACTGGAAGCATCATATGATGATAT - : L C K S - T C D I Q E T G S I I - - Y : D C V R A E P V I Y K K L E A S Y D D I L : I V - E L N L - Y T R N W K H H M M I . . . . . . 116751 AGCACTTCTGAGGGCTTATGTCGGGGACAGACCTACTTGGAGGACTCCACAGCACCCATG S T S E G L C R G Q T Y L E D S T A P M A L L R A Y V G D R P T W R T P Q H P W - H F - G L M S G T D L L G G L H S T H . . . . . . 116691 GCGAGTAGATGGGAGGTTCAACCTCAAAGGGGTACCAACCTTAATCAGATGGGAAAATGA A S R W E V Q P Q R G T N L N Q M G K - R V D G R F N L K G V P T L I R W E N D G E - M G G S T S K G Y Q P - S D G K M . . . . . . 116631 TGCAATCAAAGGTCGTCTTGAAGACCATGAAGCACACCTTGATCACAAAATTGGTTCCCT C N Q R S S - R P - S T P - S Q N W F P A I K G R L E D H E A H L D H K I G S L M Q S K V V L K T M K H T L I T K L V P . . . . . . 116571 TCTGAATGAAGCTTAAAGTGTCCCATTAACTACTTCAAGGGGCTGCCTTATATTATGAGA S E - S L K C P I N Y F K G L P Y I M R L N E A - S V P L T T S R G C L I L - E F - M K L K V S H - L L Q G A A L Y Y E . . . . . . 116511 GTGCCTTAATAAAATATGCGAAACTTCATTGGCCTGAATGAACCTCATTTAAGAAGCCGT V P - - N M R N F I G L N E P H L R S R C L N K I C E T S L A - M N L I - E A V S A L I K Y A K L H W P E - T S F K K P . . . . . . 116451 GAATATGATGACTCAGTGCTAGTGGTAGCGGGAAAAACTAGTGATTCTTGTTTAACATGT E Y D D S V L V V A G K T S D S C L T C N M M T Q C - W - R E K L V I L V - H V - I - - L S A S G S G K N - - F L F N M . . . . . . 116391 GTTGCTTCCATTTCTCCTGCCATGCTTAGTGTACTAAATTATACATCAATAGCATGTTTA V A S I S P A M L S V L N Y T S I A C L L L P F L L P C L V Y - I I H Q - H V - C C F H F S C H A - C T K L Y I N S M F . . . . . 116331 ATGTGTTGCTAAAATGGAAATTATTGCATTGTGTTTGACATGAA M C C - N G N Y C I V F D M C V A K M E I I A L C L T - N V L L K W K L L H C V - H E Maximal non-overlapping open reading frames (>= 64 codons): >C10HBa0111D09.1-_PGL-15_AGS-1_PPS_1 (121829 121664,116809 116556) (frame '2'; 417 bp, 139 residues) 1 NRIVAVRMPL KVLDATITTF DGVFEKFKAE SPKNKANFIL FLADIDPSTN LSWCPDCVRA 61 EPVIYKKLEA SYDDIALLRA YVGDRPTWRT PQHPWRVDGR FNLKGVPTLI RWENDAIKGR 121 LEDHEAHLDH KIGSLLNEA- PGL 16 (+ strand): 124815 129927 AGS-1 (124815 124843,128353 129353) SCR (e 0.793 d 0.900 a 0.000,e 0.877) Exon 1 124815 124843 ( 29 n); score: 0.793 Intron 1 124844 128352 (3509 n); Pd: 0.900 Pa: 0.000 Exon 2 128353 129353 (1001 n); score: 0.877 PGS (124815 124843,128353 128923) SGN-E369291- PGS (128344 128572) SGN-E357596- PGS (128346 128923) SGN-E261921- PGS (128355 128837) SGN-E349968- PGS (128367 128921) SGN-E546025+ PGS (128453 128923) SGN-E322644- PGS (128479 129041) SGN-E346859- PGS (128490 129008) SGN-E243969+ PGS (128508 129027) SGN-E540293+ PGS (128508 129019) SGN-E286708+ PGS (128520 128923) SGN-E258752- PGS (128530 129191) SGN-E352282+ PGS (128554 128923) SGN-E255290- PGS (128612 128923) SGN-E258181- PGS (128642 129353) SGN-E578039+ PGS (128648 129019) SGN-E577891+ PGS (128733 128923) SGN-E546067- PGS (128743 128927) SGN-E336039- PGS (128765 128984) SGN-E356584+ 3-phase translation of AGS-1 (+strand): . . . : . . . 124815 CAACAAGTGCAATGATTAATCAAAACCCT : AATAATACGGAGTCTAACTATCTGGTGTCTA Q Q V Q - L I K T L : I I R S L T I W C L N K C N D - S K P : - - Y G V - L S G V - T S A M I N Q N P : N N T E S N Y L V S . . . . . . 128384 ATCTCATAGAGTCTAACCTCAAAAAAGAGATTTTTCGAACTATTTATAAAAAAAACAAAA I S - S L T S K K R F F E L F I K K T K S H R V - P Q K R D F S N Y L - K K Q K N L I E S N L K K E I F R T I Y K K N K . . . . . . 128444 ACCTAATTAAAAAAGGATTCTAATTGCTTGAAATTTGCCAAAATGCGGCTGGGTCGACGG T - L K K D S N C L K F A K M R L G R R P N - K R I L I A - N L P K C G W V D G N L I K K G F - L L E I C Q N A A G S T . . . . . . 128504 ACCACGCGACGGAGCGTCGTAGTCACGACGGACCGTCATGGACTCCGTCGTCCCATACTT T T R R S V V V T T D R H G L R R P I L P R D G A S - S R R T V M D S V V P Y L D H A T E R R S H D G P S W T P S S H T . . . . . . 128564 GTGCAATTTCTTCTGCTGCTATCCTCATTCTCCTTGACGGCAAGTATGACGGACCGTCAT V Q F L L L L S S F S L T A S M T D R H C N F F C C Y P H S P - R Q V - R T V I C A I S S A A I L I L L D G K Y D G P S . . . . . . 128624 AGGCAAAACGGTCCGTTTAGGGTCTCGTTCCAAAGTACTTCAACTCTTGAAATCTGGGTA R Q N G P F R V S F Q S T S T L E I W V G K T V R L G S R S K V L Q L L K S G Y - A K R S V - G L V P K Y F N S - N L G . . . . . . 128684 CTGGACCACTTCTCTGTTCTTCACGACAAACCTGCTGGACGGACCGTCATAGCCACGACG L D H F S V L H D K P A G R T V I A T T W T T S L F F T T N L L D G P S - P R R T G P L L C S S R Q T C W T D R H S H D . . . . . . 128744 GACCATCACAAGCTTCGTAATCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAAC D H H K L R N P T L G Q T S P S S F S N T I T S F V I P H L V R L P H L P S A T G P S Q A S - S H T W S D F P I F L Q Q . . . . . . 128804 TGCACTATGCTTCCACCCACGGACCGTCACAAGCACGACGGACCGTCATAAGCTCCGTAG C T M L P P T D R H K H D G P S - A P - A L C F H P R T V T S T T D R H K L R R L H Y A S T H G P S Q A R R T V I S S V . . . . . . 128864 GTGGTCTCTTCTGCAATTCTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCT V V S S A I L R S K S P H S A L D R F P W S L L Q F F A Q N L R I Q L W T D F L G G L F C N S S L K I S A F S F G Q I S . . . . . . 128924 GCAAAACAAAGAGAAACTTATATAAAAATTAGCATAAAAAGGCTTTTGGACACACTAAAC A K Q R E T Y I K I S I K R L L D T L N Q N K E K L I - K L A - K G F W T H - T C K T K R N L Y K N - H K K A F G H T K . . . . . . 128984 TTAAGGAAATTTTTTTAATAATACCGTGAAACCACGGTATATCAACACCCTCAACTTAAA L R K F F - - Y R E T T V Y Q H P Q L K - G N F F N N T V K P R Y I N T L N L N L K E I F L I I P - N H G I S T P S T - . . . . . . 129044 TTCATTGTTTGTCCTCAAGCGATGCACTATGACTCACTACACAATCTTTGTACAATAGTA F I V C P Q A M H Y D S L H N L C T I V S L F V L K R C T M T H Y T I F V Q - Y I H C L S S S D A L - L T T Q S L Y N S . . . . . . 129104 TCCATGTTTTATCCTTTGCAATCATTTGGCTATCAATCCCGATTAATCTCATCACATCTA S M F Y P L Q S F G Y Q S R L I S S H L P C F I L C N H L A I N P D - S H H I Y I H V L S F A I I W L S I P I N L I T S . . . . . . 129164 TGCATGCTATCACTGTTAGGCTTGAATTTTGTGGGATCAGAACATGACACAGACTCACCA C M L S L L G L N F V G S E H D T D S P A C Y H C - A - I L W D Q N M T Q T H H M H A I T V R L E F C G I R T - H R L T . . . . . . 129224 CGCACTAACACCTATCCTCTTCAATTTCTCACTGAGGTGCTAACAATTATGGTATTGTAA R T N T Y P L Q F L T E V L T I M V L - A L T P I L F N F S L R C - Q L W Y C N T H - H L S S S I S H - G A N N Y G I V . . . . . . 129284 CTACTGTCCTCACTTTAAAACAAAATCCTCCTTTTTCACACAATGATTTCAGTTTGAGTA L L S S L - N K I L L F H T M I S V - V Y C P H F K T K S S F F T Q - F Q F E Y T T V L T L K Q N P P F S H N D F S L S . 129344 TAAGGATTAC - G L K D Y I R I Maximal non-overlapping open reading frames (>= 64 codons): >C10HBa0111D09.1+_PGL-16_AGS-1_PPS_1 (128450 128854) (frame '1'; 402 bp, 134 residues) 1 LKKDSNCLKF AKMRLGRRTT RRSVVVTTDR HGLRRPILVQ FLLLLSSFSL TASMTDRHRQ 61 NGPFRVSFQS TSTLEIWVLD HFSVLHDKPA GRTVIATTDH HKLRNPTLGQ TSPSSFSNCT 121 MLPPTDRHKH DGPS- >C10HBa0111D09.1+_PGL-16_AGS-1_PPS_2 (129005 129283) (frame '1'; 276 bp, 92 residues) 1 YRETTVYQHP QLKFIVCPQA MHYDSLHNLC TIVSMFYPLQ SFGYQSRLIS SHLCMLSLLG 61 LNFVGSEHDT DSPRTNTYPL QFLTEVLTIM VL- AGS-2 (127557 128923) SCR (e 0.838) Exon 1 127557 128923 (1367 n); score: 0.838 PGS (127557 128241) SGN-E241731+ PGS (128085 128654) SGN-E550629+ PGS (128085 128654) SGN-E550645+ PGS (128086 128465) SGN-E273427+ PGS (128325 128923) SGN-E369290+ 3-phase translation of AGS-2 (+strand): . . . . . . 127557 AGACTTAACTTCAACTTGTTATTACTATTGTTGGGTTAATGGCTTCCTTGGAAAGTAAAA R L N F N L L L L L L G - W L P W K V K D L T S T C Y Y Y C W V N G F L G K - K T - L Q L V I T I V G L M A S L E S K . . . . . . 127617 ACAATAACGGGGGGTTTCTATTTCTAAATGAGTGAAAATAAATAACGAACTTGAAAGAGA T I T G G F Y F - M S E N K - R T - K R Q - R G V S I S K - V K I N N E L E R D N N N G G F L F L N E - K - I T N L K E . . . . . . 127677 CACTTAACAACTTTTGAATGATGGGTTTTAATCAATTAATCAAAGTAACTAGGGTTTACG H L T T F E - W V L I N - S K - L G F T T - Q L L N D G F - S I N Q S N - G L R T L N N F - M M G F N Q L I K V T R V Y . . . . . . 127737 TGTTCCTCACAGGTTCATAACTTGATAATTCCAACTATAACAATTATTTTCTAGTATCTT C S S Q V H N L I I P T I T I I F - Y L V P H R F I T - - F Q L - Q L F S S I L V F L T G S - L D N S N Y N N Y F L V S . . . . . . 127797 GCATGCAAAGTGATAAGTTATTATTTCTAAATCCTTGGTCCGGCATCTAGAAAATCTCAT A C K V I S Y Y F - I L G P A S R K S H H A K - - V I I S K S L V R H L E N L I C M Q S D K L L F L N P W S G I - K I S . . . . . . 127857 TCCGTACCTTGGTCCGGCTACGTGTGTTGCTATCCTAACCCTTATCCTTACCTCATATTA S V P W S G Y V C C Y P N P Y P Y L I L P Y L G P A T C V A I L T L I L T S Y - F R T L V R L R V L L S - P L S L P H I . . . . . . 127917 AGCATCGTATTCAATATTTGACTAAGTTATTACCTCGTACCAATCAATACTAGCCTATTA S I V F N I - L S Y Y L V P I N T S L L A S Y S I F D - V I T S Y Q S I L A Y - K H R I Q Y L T K L L P R T N Q Y - P I . . . . . . 127977 GATAGTATACACTAAATCTATGTTAATAATTCTTTTCCTATTATCTACCTCCTTGGTCCA D S I H - I Y V N N S F P I I Y L L G P I V Y T K S M L I I L F L L S T S L V Q R - Y T L N L C - - F F S Y Y L P P W S . . . . . . 128037 GCAAGTAGCATTAAGGCGAGTTCTAACGTCGGCCATCCATTAAAAAGACTTTTAAGCGAA A S S I K A S S N V G H P L K R L L S E Q V A L R R V L T S A I H - K D F - A K S K - H - G E F - R R P S I K K T F K R . . . . . . 128097 AGAATTATTAATACATGCAAGACACTAATCTAGAAATGTTATTTTAGTTAGGGTTTATCT R I I N T C K T L I - K C Y F S - G L S E L L I H A R H - S R N V I L V R V Y L K N Y - Y M Q D T N L E M L F - L G F I . . . . . . 128157 CATTATTTGCCTATGGTTCCCACAACCCTAGTTATGGAGTTTAGTTACTCATAGCCATAA H Y L P M V P T T L V M E F S Y S - P - I I C L W F P Q P - L W S L V T H S H K S L F A Y G S H N P S Y G V - L L I A I . . . . . . 128217 ACACAATATTCAAATATATTAAATACGAATTCATGTACTTACTTCAATGAGAAACAATAA T Q Y S N I L N T N S C T Y F N E K Q - H N I Q I Y - I R I H V L T S M R N N K N T I F K Y I K Y E F M Y L L Q - E T I . . . . . . 128277 AATCCACAGTTTGCTTGATTAATCTCCAAAAATCACTTGCAAGAATCTAAAAATCTAACA N P Q F A - L I S K N H L Q E S K N L T I H S L L D - S P K I T C K N L K I - Q K S T V C L I N L Q K S L A R I - K S N . . . . . . 128337 ATAATACACAAAGTCTAATAATACGGAGTCTAACTATCTGGTGTCTAATCTCATAGAGTC I I H K V - - Y G V - L S G V - S H R V - Y T K S N N T E S N Y L V S N L I E S N N T Q S L I I R S L T I W C L I S - S . . . . . . 128397 TAACCTCAAAAAAGAGATTTTTCGAACTATTTATAAAAAAAACAAAAACCTAATTAAAAA - P Q K R D F S N Y L - K K Q K P N - K N L K K E I F R T I Y K K N K N L I K K L T S K K R F F E L F I K K T K T - L K . . . . . . 128457 AGGATTCTAATTGCTTGAAATTTGCCAAAATGCGGCTGGGTCGACGGACCACGCGACGGA R I L I A - N L P K C G W V D G P R D G G F - L L E I C Q N A A G S T D H A T E K D S N C L K F A K M R L G R R T T R R . . . . . . 128517 GCGTCGTAGTCACGACGGACCGTCATGGACTCCGTCGTCCCATACTTGTGCAATTTCTTC A S - S R R T V M D S V V P Y L C N F F R R S H D G P S W T P S S H T C A I S S S V V V T T D R H G L R R P I L V Q F L . . . . . . 128577 TGCTGCTATCCTCATTCTCCTTGACGGCAAGTATGACGGACCGTCATAGGCAAAACGGTC C C Y P H S P - R Q V - R T V I G K T V A A I L I L L D G K Y D G P S - A K R S L L L S S F S L T A S M T D R H R Q N G . . . . . . 128637 CGTTTAGGGTCTCGTTCCAAAGTACTTCAACTCTTGAAATCTGGGTACTGGACCACTTCT R L G S R S K V L Q L L K S G Y W T T S V - G L V P K Y F N S - N L G T G P L L P F R V S F Q S T S T L E I W V L D H F . . . . . . 128697 CTGTTCTTCACGACAAACCTGCTGGACGGACCGTCATAGCCACGACGGACCATCACAAGC L F F T T N L L D G P S - P R R T I T S C S S R Q T C W T D R H S H D G P S Q A S V L H D K P A G R T V I A T T D H H K . . . . . . 128757 TTCGTAATCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAACTGCACTATGCTTC F V I P H L V R L P H L P S A T A L C F S - S H T W S D F P I F L Q Q L H Y A S L R N P T L G Q T S P S S F S N C T M L . . . . . . 128817 CACCCACGGACCGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTG H P R T V T S T T D R H K L R R W S L L T H G P S Q A R R T V I S S V G G L F C P P T D R H K H D G P S - A P - V V S S . . . . . 128877 CAATTCTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCT Q F F A Q N L R I Q L W T D F N S S L K I S A F S F G Q I S A I L R S K S P H S A L D R F P Maximal non-overlapping open reading frames (>= 64 codons): >C10HBa0111D09.1+_PGL-16_AGS-2_PPS_1 (128450 128854) (frame '0'; 402 bp, 134 residues) 1 LKKDSNCLKF AKMRLGRRTT RRSVVVTTDR HGLRRPILVQ FLLLLSSFSL TASMTDRHRQ 61 NGPFRVSFQS TSTLEIWVLD HFSVLHDKPA GRTVIATTDH HKLRNPTLGQ TSPSSFSNCT 121 MLPPTDRHKH DGPS- 3-phase translation of AGS-2 (-strand): . . . . . . 128923 AGGAAATCTGTCCAAAGCTGAATGCGGAGATTTTGAGCGAAGAATTGCAGAAGAGACCAC R K S V Q S - M R R F - A K N C R R D H G N L S K A E C G D F E R R I A E E T T E I C P K L N A E I L S E E L Q K R P . . . . . . 128863 CTACGGAGCTTATGACGGTCCGTCGTGCTTGTGACGGTCCGTGGGTGGAAGCATAGTGCA L R S L - R S V V L V T V R G W K H S A Y G A Y D G P S C L - R S V G G S I V Q P T E L M T V R R A C D G P W V E A - C . . . . . . 128803 GTTGCTGAAGGAAGATGGGGAAGTCTGACCAAGTGTGGGATTACGAAGCTTGTGATGGTC V A E G R W G S L T K C G I T K L V M V L L K E D G E V - P S V G L R S L - W S S C - R K M G K S D Q V W D Y E A C D G . . . . . . 128743 CGTCGTGGCTATGACGGTCCGTCCAGCAGGTTTGTCGTGAAGAACAGAGAAGTGGTCCAG R R G Y D G P S S R F V V K N R E V V Q V V A M T V R P A G L S - R T E K W S S P S W L - R S V Q Q V C R E E Q R S G P . . . . . . 128683 TACCCAGATTTCAAGAGTTGAAGTACTTTGGAACGAGACCCTAAACGGACCGTTTTGCCT Y P D F K S - S T L E R D P K R T V L P T Q I S R V E V L W N E T L N G P F C L V P R F Q E L K Y F G T R P - T D R F A . . . . . . 128623 ATGACGGTCCGTCATACTTGCCGTCAAGGAGAATGAGGATAGCAGCAGAAGAAATTGCAC M T V R H T C R Q G E - G - Q Q K K L H - R S V I L A V K E N E D S S R R N C T Y D G P S Y L P S R R M R I A A E E I A . . . . . . 128563 AAGTATGGGACGACGGAGTCCATGACGGTCCGTCGTGACTACGACGCTCCGTCGCGTGGT K Y G T T E S M T V R R D Y D A P S R G S M G R R S P - R S V V T T T L R R V V Q V W D D G V H D G P S - L R R S V A W . . . . . . 128503 CCGTCGACCCAGCCGCATTTTGGCAAATTTCAAGCAATTAGAATCCTTTTTTAATTAGGT P S T Q P H F G K F Q A I R I L F - L G R R P S R I L A N F K Q L E S F F N - V S V D P A A F W Q I S S N - N P F L I R . . . . . . 128443 TTTTGTTTTTTTTATAAATAGTTCGAAAAATCTCTTTTTTGAGGTTAGACTCTATGAGAT F C F F Y K - F E K S L F - G - T L - D F V F F I N S S K N L F F E V R L Y E I F L F F L - I V R K I S F L R L D S M R . . . . . . 128383 TAGACACCAGATAGTTAGACTCCGTATTATTAGACTTTGTGTATTATTGTTAGATTTTTA - T P D S - T P Y Y - T L C I I V R F L R H Q I V R L R I I R L C V L L L D F - L D T R - L D S V L L D F V Y Y C - I F . . . . . . 128323 GATTCTTGCAAGTGATTTTTGGAGATTAATCAAGCAAACTGTGGATTTTATTGTTTCTCA D S C K - F L E I N Q A N C G F Y C F S I L A S D F W R L I K Q T V D F I V S H R F L Q V I F G D - S S K L W I L L F L . . . . . . 128263 TTGAAGTAAGTACATGAATTCGTATTTAATATATTTGAATATTGTGTTTATGGCTATGAG L K - V H E F V F N I F E Y C V Y G Y E - S K Y M N S Y L I Y L N I V F M A M S I E V S T - I R I - Y I - I L C L W L - . . . . . . 128203 TAACTAAACTCCATAACTAGGGTTGTGGGAACCATAGGCAAATAATGAGATAAACCCTAA - L N S I T R V V G T I G K - - D K P - N - T P - L G L W E P - A N N E I N P N V T K L H N - G C G N H R Q I M R - T L . . . . . . 128143 CTAAAATAACATTTCTAGATTAGTGTCTTGCATGTATTAATAATTCTTTCGCTTAAAAGT L K - H F - I S V L H V L I I L S L K S - N N I S R L V S C M Y - - F F R L K V T K I T F L D - C L A C I N N S F A - K . . . . . . 128083 CTTTTTAATGGATGGCCGACGTTAGAACTCGCCTTAATGCTACTTGCTGGACCAAGGAGG L F N G W P T L E L A L M L L A G P R R F L M D G R R - N S P - C Y L L D Q G G S F - W M A D V R T R L N A T C W T K E . . . . . . 128023 TAGATAATAGGAAAAGAATTATTAACATAGATTTAGTGTATACTATCTAATAGGCTAGTA - I I G K E L L T - I - C I L S N R L V R - - E K N Y - H R F S V Y Y L I G - Y V D N R K R I I N I D L V Y T I - - A S . . . . . . 127963 TTGATTGGTACGAGGTAATAACTTAGTCAAATATTGAATACGATGCTTAATATGAGGTAA L I G T R - - L S Q I L N T M L N M R - - L V R G N N L V K Y - I R C L I - G K I D W Y E V I T - S N I E Y D A - Y E V . . . . . . 127903 GGATAAGGGTTAGGATAGCAACACACGTAGCCGGACCAAGGTACGGAATGAGATTTTCTA G - G L G - Q H T - P D Q G T E - D F L D K G - D S N T R S R T K V R N E I F - R I R V R I A T H V A G P R Y G M R F S . . . . . . 127843 GATGCCGGACCAAGGATTTAGAAATAATAACTTATCACTTTGCATGCAAGATACTAGAAA D A G P R I - K - - L I T L H A R Y - K M P D Q G F R N N N L S L C M Q D T R K R C R T K D L E I I T Y H F A C K I L E . . . . . . 127783 ATAATTGTTATAGTTGGAATTATCAAGTTATGAACCTGTGAGGAACACGTAAACCCTAGT I I V I V G I I K L - T C E E H V N P S - L L - L E L S S Y E P V R N T - T L V N N C Y S W N Y Q V M N L - G T R K P - . . . . . . 127723 TACTTTGATTAATTGATTAAAACCCATCATTCAAAAGTTGTTAAGTGTCTCTTTCAAGTT Y F D - L I K T H H S K V V K C L F Q V T L I N - L K P I I Q K L L S V S F K F L L - L I D - N P S F K S C - V S L S S . . . . . . 127663 CGTTATTTATTTTCACTCATTTAGAAATAGAAACCCCCCGTTATTGTTTTTACTTTCCAA R Y L F S L I - K - K P P V I V F T F Q V I Y F H S F R N R N P P L L F L L S K S L F I F T H L E I E T P R Y C F Y F P . . . . . 127603 GGAAGCCATTAACCCAACAATAGTAATAACAAGTTGAAGTTAAGTCT G S H - P N N S N N K L K L S E A I N P T I V I T S - S - V R K P L T Q Q - - - Q V E V K S Maximal non-overlapping open reading frames (>= 64 codons): none AGS-3 (129406 129927) SCR (e 0.717) Exon 1 129406 129927 ( 522 n); score: 0.717 PGS (129406 129927) SGN-E244201+ 3-phase translation of AGS-3 (+strand): . . . . . . 129406 TAAGGTTGCCCTTATTTTCACTTCCTTAAGTTCGCTACACAACCCTTAAGATCACGATAG - G C P Y F H F L K F A T Q P L R S R - K V A L I F T S L S S L H N P - D H D R R L P L F S L P - V R Y T T L K I T I . . . . . . 129466 GACTTTTTTAGCTAGTAACATAGGCTCGGGGTCAGGTAAGGTATATTTTGGTATACTTTA D F F S - - H R L G V R - G I F W Y T L T F L A S N I G S G S G K V Y F G I L - G L F - L V T - A R G Q V R Y I L V Y F . . . . . . 129526 GTGACTTTTTTCCCTCCTTGACATATCGGCTAAACCTTCCACAGTCTCTCATTTTATCTT V T F F P P - H I G - T F H S L S F Y L - L F S L L D I S A K P S T V S H F I L S D F F P S L T Y R L N L P Q S L I L S . . . . . . 129586 GCCCAGTTTCTCATATTCTTTCACCTTGCTATTTTCTCTTCTTTCTTCATTTGTGTAAGT A Q F L I F F H L A I F S S F F I C V S P S F S Y S F T L L F S L L S S F V - V C P V S H I L S P C Y F L F F L H L C K . . . . . . 129646 GACTCTCTTCTTTTCTTGCTTGTATTTCTTGTGTACTTTTATTTTTCTTTACTTTTTTTT D S L L F L L V F L V Y F Y F S L L F F T L F F S C L Y F L C T F I F L Y F F F - L S S F L A C I S C V L L F F F T F F . . . . . . 129706 CATCTAATTCTTGAGTCACTTTACTTTTTTTCTTTCTCTCTCTTTGTTCTTTCAACCCCA H L I L E S L Y F F S F S L F V L S T P I - F L S H F T F F L S L S L F F Q P H S S N S - V T L L F F F L S L C S F N P . . . . . . 129766 CTTTCCAGAGCATTCCTCATAGTAGCCACCCTCAACTCATGGCTTTGCCATGAGTCAAGG L S R A F L I V A T L N S W L C H E S R F P E H S S - - P P S T H G F A M S Q G T F Q S I P H S S H P Q L M A L P - V K . . . . . . 129826 TACACAATACCCAAAGTTGGGTCAGGGCCATAACGAAGGTTGTTTATGCATTAGCCACCC Y T I P K V G S G P - R R L F M H - P P T Q Y P K L G Q G H N E G C L C I S H P V H N T Q S W V R A I T K V V Y A L A T . . . . . 129886 TCAACTTATGCTTTTGGCATAAGCTGAGGTGCACATGTCCAA S T Y A F G I S - G A H V Q Q L M L L A - A E V H M S L N L C F W H K L R C T C P Maximal non-overlapping open reading frames (>= 64 codons): >C10HBa0111D09.1+_PGL-16_AGS-3_PPS_1 (129559 129858) (frame '1'; 297 bp, 99 residues) 1 TFHSLSFYLA QFLIFFHLAI FSSFFICVSD SLLFLLVFLV YFYFSLLFFH LILESLYFFS 61 FSLFVLSTPL SRAFLIVATL NSWLCHESRY TIPKVGSGP- 3-phase translation of AGS-3 (-strand): . . . . . . 129927 TTGGACATGTGCACCTCAGCTTATGCCAAAAGCATAAGTTGAGGGTGGCTAATGCATAAA L D M C T S A Y A K S I S - G W L M H K W T C A P Q L M P K A - V E G G - C I N G H V H L S L C Q K H K L R V A N A - . . . . . . 129867 CAACCTTCGTTATGGCCCTGACCCAACTTTGGGTATTGTGTACCTTGACTCATGGCAAAG Q P S L W P - P N F G Y C V P - L M A K N L R Y G P D P T L G I V Y L D S W Q S T T F V M A L T Q L W V L C T L T H G K . . . . . . 129807 CCATGAGTTGAGGGTGGCTACTATGAGGAATGCTCTGGAAAGTGGGGTTGAAAGAACAAA P - V E G G Y Y E E C S G K W G - K N K H E L R V A T M R N A L E S G V E R T K A M S - G W L L - G M L W K V G L K E Q . . . . . . 129747 GAGAGAGAAAGAAAAAAAGTAAAGTGACTCAAGAATTAGATGAAAAAAAAGTAAAGAAAA E R E R K K V K - L K N - M K K K - R K R E K E K K - S D S R I R - K K S K E K R E R K K K S K V T Q E L D E K K V K K . . . . . . 129687 ATAAAAGTACACAAGAAATACAAGCAAGAAAAGAAGAGAGTCACTTACACAAATGAAGAA I K V H K K Y K Q E K K R V T Y T N E E - K Y T R N T S K K R R E S L T Q M K K N K S T Q E I Q A R K E E S H L H K - R . . . . . . 129627 AGAAGAGAAAATAGCAAGGTGAAAGAATATGAGAAACTGGGCAAGATAAAATGAGAGACT R R E N S K V K E Y E K L G K I K - E T E E K I A R - K N M R N W A R - N E R L K K R K - Q G E R I - E T G Q D K M R D . . . . . . 129567 GTGGAAGGTTTAGCCGATATGTCAAGGAGGGAAAAAAGTCACTAAAGTATACCAAAATAT V E G L A D M S R R E K S H - S I P K Y W K V - P I C Q G G K K V T K V Y Q N I C G R F S R Y V K E G K K S L K Y T K I . . . . . . 129507 ACCTTACCTGACCCCGAGCCTATGTTACTAGCTAAAAAAGTCCTATCGTGATCTTAAGGG T L P D P E P M L L A K K V L S - S - G P Y L T P S L C Y - L K K S Y R D L K G Y L T - P R A Y V T S - K S P I V I L R . . . . . 129447 TTGTGTAGCGAACTTAAGGAAGTGAAAATAAGGGCAACCTTA L C S E L K E V K I R A T L C V A N L R K - K - G Q P V V - R T - G S E N K G N L Maximal non-overlapping open reading frames (>= 64 codons): none PGL 17 (- strand): 130875 130343 AGS-1 (130875 130815,130695 130343) SCR (e 0.803 d 0.000 a 0.000,e 0.833) Exon 1 130875 130815 ( 61 n); score: 0.803 Intron 1 130814 130696 ( 119 n); Pd: 0.000 Pa: 0.000 Exon 2 130695 130343 ( 353 n); score: 0.833 PGS (130875 130815,130695 130343) SGN-E577987- PGS (130710 130399) SGN-E243970+ 3-phase translation of AGS-1 (-strand): . . . . . . 130875 AGGCGTAGGGGTCGAGCAGAGGAAGAGGCGCGAGCACGGAAGAAGGAGCGCCGTGATAGA R R R G R A E E E A R A R K K E R R D R G V G V E Q R K R R E H G R R S A V I E A - G S S R G R G A S T E E G A P - - . : . . . . . 130815 G : GGATGTTGCTGAGCACACCACTGAGGGTGTCCAGATTGCAGAGGACGTGGTTCTGGGGA : G M L L S T P L R V S R L Q R T W F W G : G C C - A H H - G C P D C R G R G S G E R : D V A E H T T E G V Q I A E D V V L G . . . . . . 130636 ACCGAACCCACGATCTTGTTGATCGACGGCGCTTTGCGCCACAGGTTTGCTTCACCTACC T E P T I L L I D G A L R H R F A S P T P N P R S C - S T A L C A T G L L H L P N R T H D L V D R R R F A P Q V C F T Y . . . . . . 130576 ACTCTTGTATTTAGATTTTTATGCATTGGGGACAATTGCATGCCTTTTTGTTGGGGGTGG T L V F R F L C I G D N C M P F C W G W L L Y L D F Y A L G T I A C L F V G G G H S C I - I F M H W G Q L H A F L L G V . . . . . . 130516 GGTAAATGGATAGTGAGTGTTAGGGTGAAGTCTTAGTAGCCCAATTCACTATCCTCTTTA G K W I V S V R V K S - - P N S L S S L V N G - - V L G - S L S S P I H Y P L - G - M D S E C - G E V L V A Q F T I L F . . . . . . 130456 GGGGTTTTCTTGCATGTGTTCTTTTTCCCCAAAAGACTGATTACTTTTTCTGTTGAACAG G V F L H V F F F P K R L I T F S V E Q G F S C M C S F S P K D - L L F L L N R R G F L A C V L F P Q K T D Y F F C - T . . . . . . 130396 GTATGTTTATATCTTTTGTACATAGTTTAAGTCTGAAGCATGACGGCTAAAATG V C L Y L L Y I V - V - S M T A K M Y V Y I F C T - F K S E A - R L K G M F I S F V H S L S L K H D G - N Maximal non-overlapping open reading frames (>= 64 codons): >C10HBa0111D09.1-_PGL-17_AGS-1_PPS_1 (130875 130815,130695 130481) (frame '1'; 273 bp, 91 residues) 1 RRRGRAEEEA RARKKERRDR GMLLSTPLRV SRLQRTWFWG TEPTILLIDG ALRHRFASPT 61 TLVFRFLCIG DNCMPFCWGW GKWIVSVRVK S- PGL 18 (- strand): 132277 131564 AGS-1 (132277 131564) SCR (e 0.865) Exon 1 132277 131564 ( 714 n); score: 0.865 PGS (132277 131564) SGN-E578194- 3-phase translation of AGS-1 (-strand): . . . . . . 132277 AGTTTCAAGTCTACTCCGATGCCAAGTTTCTGACTGATAAAGGTGTGATGACTCAAACAC S F K S T P M P S F - L I K V - - L K H V S S L L R C Q V S D - - R C D D S N T F Q V Y S D A K F L T D K G V M T Q T . . . . . . 132217 TTACCTTGGAGCGGCGGGTACTTACAGGGAGTCTCCCAACGATGCCGGAGATCCACAACC L P W S G G Y L Q G V S Q R C R R S T T Y L G A A G T Y R E S P N D A G D P Q P L T L E R R V L T G S L P T M P E I H N . . . . . . 132157 TCTTCACCAGGCATCGCTTAGAGTGGAAAGCATGCCTGTTGGGATGATACAGTGAGGAAA S S P G I A - S G K H A C W D D T V R K L H Q A S L R V E S M P V G M I Q - G N L F T R H R L E W K A C L L G - Y S E E . . . . . . 132097 TGATCCGAGAGTTCTACGCATCCTACGTAGCGACTCTCCGATCACAGATCGATAGGCGGG - S E S S T H P T - R L S D H R S I G G D P R V L R I L R S D S P I T D R - A G M I R E F Y A S Y V A T L R S Q I D R R . . . . . . 132037 CTGCTCCCGTTAAATAGGCCCCACTGGAGCAGGTTCGAGTCTGGGGTGTGCAGGTTGACA L L P L N R P H W S R F E S G V C R L T C S R - I G P T G A G S S L G C A G - H A A P V K - A P L E Q V R V W G V Q V D . . . . . . 131977 TTTCCCTGCCAGCCATCCGCCGGTTTCTATACGGTGACAGTGCAGATGCTACTCGAACCC F P C Q P S A G F Y T V T V Q M L L E P F P A S H P P V S I R - Q C R C Y S N P I S L P A I R R F L Y G D S A D A T R T . . . . . . 131917 CTATCACTGCCGAGTTTGACTACCGCTGTCAGATAGTAAAGGATGGACAGTTCTTGCTGA L S L P S L T T A V R - - R M D S S C - Y H C R V - L P L S D S K G W T V L A E P I T A E F D Y R C Q I V K D G Q F L L . . . . . . 131857 GACAGCACTGGGAGAGACCACCAAGAGGTGGATGGCCTTGCACCTGTCAGTAGATGGAGA D S T G R D H Q E V D G L A P V S R W R T A L G E T T K R W M A L H L S V D G E R Q H W E R P P R G G W P C T C Q - M E . . . . . . 131797 GGGTGCCGATTGGGTCACTGAGCCGAAGGGGGCCATCAAGAAGGCCAACCTCAGGTTCAC G C R L G H - A E G G H Q E G Q P Q V H G A D W V T E P K G A I K K A N L R F T R V P I G S L S R R G P S R R P T S G S . . . . . . 131737 AGCAAAGTTCTTGTGGCTGCTCATCCGTCACTACCTTTCCCCCACAGCTGCTGATAACAT S K V L V A A H P S L P F P H S C - - H A K F L W L L I R H Y L S P T A A D N I Q Q S S C G C S S V T T F P P Q L L I T . . . . . . 131677 CGTTACCTGGGATCGAGCAGTGTTGATGGCAGCGATGTTAGCCGGATTCGAGGTGGACTT R Y L G S S S V D G S D V S R I R G G L V T W D R A V L M A A M L A G F E V D F S L P G I E Q C - W Q R C - P D S R W T . . . . . . 131617 CGCATGGCTTCACCAGGCAATCATGCACGAGAGGGCATTCAAGGTCACTACTAC R M A S P G N H A R E G I Q G H Y Y A W L H Q A I M H E R A F K V T T S H G F T R Q S C T R G H S R S L L Maximal non-overlapping open reading frames (>= 64 codons): >C10HBa0111D09.1-_PGL-18_AGS-1_PPS_1 (131898 131566) (frame '2'; 333 bp, 111 residues) 1 LPLSDSKGWT VLAETALGET TKRWMALHLS VDGEGADWVT EPKGAIKKAN LRFTAKFLWL 61 LIRHYLSPTA ADNIVTWDRA VLMAAMLAGF EVDFAWLHQA IMHERAFKVT T 3-phase translation of AGS-1 (+strand): . . . . . . 131564 GTAGTAGTGACCTTGAATGCCCTCTCGTGCATGATTGCCTGGTGAAGCCATGCGAAGTCC V V V T L N A L S C M I A W - S H A K S - - - P - M P S R A - L P G E A M R S P S S D L E C P L V H D C L V K P C E V . . . . . . 131624 ACCTCGAATCCGGCTAACATCGCTGCCATCAACACTGCTCGATCCCAGGTAACGATGTTA T S N P A N I A A I N T A R S Q V T M L P R I R L T S L P S T L L D P R - R C Y H L E S G - H R C H Q H C S I P G N D V . . . . . . 131684 TCAGCAGCTGTGGGGGAAAGGTAGTGACGGATGAGCAGCCACAAGAACTTTGCTGTGAAC S A A V G E R - - R M S S H K N F A V N Q Q L W G K G S D G - A A T R T L L - T I S S C G G K V V T D E Q P Q E L C C E . . . . . . 131744 CTGAGGTTGGCCTTCTTGATGGCCCCCTTCGGCTCAGTGACCCAATCGGCACCCTCTCCA L R L A F L M A P F G S V T Q S A P S P - G W P S - W P P S A Q - P N R H P L H P E V G L L D G P L R L S D P I G T L S . . . . . . 131804 TCTACTGACAGGTGCAAGGCCATCCACCTCTTGGTGGTCTCTCCCAGTGCTGTCTCAGCA S T D R C K A I H L L V V S P S A V S A L L T G A R P S T S W W S L P V L S Q Q I Y - Q V Q G H P P L G G L S Q C C L S . . . . . . 131864 AGAACTGTCCATCCTTTACTATCTGACAGCGGTAGTCAAACTCGGCAGTGATAGGGGTTC R T V H P L L S D S G S Q T R Q - - G F E L S I L Y Y L T A V V K L G S D R G S K N C P S F T I - Q R - S N S A V I G V . . . . . . 131924 GAGTAGCATCTGCACTGTCACCGTATAGAAACCGGCGGATGGCTGGCAGGGAAATGTCAA E - H L H C H R I E T G G W L A G K C Q S S I C T V T V - K P A D G W Q G N V N R V A S A L S P Y R N R R M A G R E M S . . . . . . 131984 CCTGCACACCCCAGACTCGAACCTGCTCCAGTGGGGCCTATTTAACGGGAGCAGCCCGCC P A H P R L E P A P V G P I - R E Q P A L H T P D S N L L Q W G L F N G S S P P T C T P Q T R T C S S G A Y L T G A A R . . . . . . 132044 TATCGATCTGTGATCGGAGAGTCGCTACGTAGGATGCGTAGAACTCTCGGATCATTTCCT Y R S V I G E S L R R M R R T L G S F P I D L - S E S R Y V G C V E L S D H F L L S I C D R R V A T - D A - N S R I I S . . . . . . 132104 CACTGTATCATCCCAACAGGCATGCTTTCCACTCTAAGCGATGCCTGGTGAAGAGGTTGT H C I I P T G M L S T L S D A W - R G C T V S S Q Q A C F P L - A M P G E E V V S L Y H P N R H A F H S K R C L V K R L . . . . . . 132164 GGATCTCCGGCATCGTTGGGAGACTCCCTGTAAGTACCCGCCGCTCCAAGGTAAGTGTTT G S P A S L G D S L - V P A A P R - V F D L R H R W E T P C K Y P P L Q G K C L W I S G I V G R L P V S T R R S K V S V . . . . . . 132224 GAGTCATCACACCTTTATCAGTCAGAAACTTGGCATCGGAGTAGACTTGAAACT E S S H L Y Q S E T W H R S R L E T S H H T F I S Q K L G I G V D L K - V I T P L S V R N L A S E - T - N Maximal non-overlapping open reading frames (>= 64 codons): >C10HBa0111D09.1+_PGL-18_AGS-1_PPS_1 (131711 131914) (frame '1'; 201 bp, 67 residues) 1 RMSSHKNFAV NLRLAFLMAP FGSVTQSAPS PSTDRCKAIH LLVVSPSAVS ARTVHPLLSD 61 SGSQTRQ- PGL 19 (- strand): 133535 132715 AGS-1 (133507 133333,133221 132715) SCR (e 0.874 d 0.000 a 0.000,e 0.866) Exon 1 133507 133333 ( 175 n); score: 0.874 Intron 1 133332 133222 ( 111 n); Pd: 0.000 Pa: 0.000 Exon 2 133221 132715 ( 507 n); score: 0.866 PGS (133507 133333,133221 132715) SGN-E350443+ 3-phase translation of AGS-1 (-strand): . . . . . . 133507 ATGTAGGTCCAAAACACTACAAGGTTGATGTGGGTTCATTGGGGATGCTTCGGGTACCCT M - V Q N T T R L M W V H W G C F G Y P C R S K T L Q G - C G F I G D A S G T L V G P K H Y K V D V G S L G M L R V P . . . . . . 133447 TAGTTTTGTCACTGTCATTCAGAACGAGACCCCGATGACGGACCGTCGTACCCACGACAG - F C H C H S E R D P D D G P S Y P R Q S F V T V I Q N E T P M T D R R T H D R L V L S L S F R T R P R - R T V V P T T . . . . . . : 133387 ACCGTCATAGAGTCCATCACATAAGCCCTAGCACCCCTGTCCCAAAGGACACATG : GTGAC T V I E S I T - A L A P L S Q R T H : G D P S - S P S H K P - H P C P K G H M : V T D R H R V H H I S P S T P V P K D T W : - . . . . . . 133216 GGACCATCGTCTTCACAACGGTCCATCCTACACAACCGTTCTGGTTGTCAGAGACCCTGT G P S S S Q R S I L H N R S G C Q R P C D H R L H N G P S Y T T V L V V R D P V R T I V F T T V H P T Q P F W L S E T L . . . . . . 133156 TTCTAAGGGTCTCTCATTTTTTTCCAAGTGTCCTTCAATGGACACATGTGACGGACCGTC F - G S L I F F Q V S F N G H M - R T V S K G L S F F S K C P S M D T C D G P S F L R V S H F F P S V L Q W T H V T D R . . . . . . 133096 GTACCCACGACAGACCGTCCTGCATGACCGTCATAACGGTCAGAGAGCCCTCTCCTAAGG V P T T D R P A - P S - R S E S P L L R Y P R Q T V L H D R H N G Q R A L S - G R T H D R P S C M T V I T V R E P S P K . . . . . . 133036 GTCTCCATTTTTTCTCAAGTGTCCTACGACGGACATATACGACGGATCGTCGTACCTGTG V S I F S Q V S Y D G H I R R I V V P V S P F F L K C P T T D I Y D G S S Y L - G L H F F S S V L R R T Y T T D R R T C . . . . . . 132976 ATGGTTCGTCCTGCACATACCATCATTCTAGTCAAAGACTCTCCTTCAGGGTTCTCTATA M V R P A H T I I L V K D S P S G F S I W F V L H I P S F - S K T L L Q G S L Y D G S S C T Y H H S S Q R L S F R V L Y . . . . . . 132916 TATACAGTCTAAGTAAAACACGACGGACCTCACGACGGTCCGTCATAGTCACGACGAGCC Y T V - V K H D G P H D G P S - S R R A I Q S K - N T T D L T T V R H S H D E P I Y S L S K T R R T S R R S V I V T T S . . . . . . 132856 GTCACCTGGCCCGTCGTGTGTCACTGCTTCTACAGCAATGACATACTATTTTTAATGTTT V T W P V V C H C F Y S N D I L F L M F S P G P S C V T A S T A M T Y Y F - C F R H L A R R V S L L L Q Q - H T I F N V . . . . . . 132796 TATTTTTTATGGTTTCACTTGTCTTGTTTGCCACTAATCGTACTAATATTGATCCTTTGC Y F L W F H L S C L P L I V L I L I L C I F Y G F T C L V C H - S Y - Y - S F A L F F M V S L V L F A T N R T N I D P L . . . 132736 AAGTACTATCTACTATGGTACC K Y Y L L W Y S T I Y Y G T Q V L S T M V Maximal non-overlapping open reading frames (>= 64 codons): >C10HBa0111D09.1-_PGL-19_AGS-1_PPS_1 (133217 132816) (frame '0'; 399 bp, 133 residues) 1 RTIVFTTVHP TQPFWLSETL FLRVSHFFPS VLQWTHVTDR RTHDRPSCMT VITVREPSPK 61 GLHFFSSVLR RTYTTDRRTC DGSSCTYHHS SQRLSFRVLY IYSLSKTRRT SRRSVIVTTS 121 RHLARRVSLL LQQ- AGS-2 (133535 133222,133189 132986) SCR (e 0.873 d 0.000 a 0.000,e 0.762) Exon 1 133535 133222 ( 314 n); score: 0.873 Intron 1 133221 133190 ( 32 n); Pd: 0.000 Pa: 0.000 Exon 2 133189 132986 ( 204 n); score: 0.762 PGS (133535 133222,133189 132986) SGN-E356743+ 3-phase translation of AGS-2 (-strand): . . . . . . 133535 TAGTTTCCTAGGTAGTTGGGTTAGACACATGTAGGTCCAAAACACTACAAGGTTGATGTG - F P R - L G - T H V G P K H Y K V D V S F L G S W V R H M - V Q N T T R L M W V S - V V G L D T C R S K T L Q G - C . . . . . . 133475 GGTTCATTGGGGATGCTTCGGGTACCCTTAGTTTTGTCACTGTCATTCAGAACGAGACCC G S L G M L R V P L V L S L S F R T R P V H W G C F G Y P - F C H C H S E R D P G F I G D A S G T L S F V T V I Q N E T . . . . . . 133415 CGATGACGGACCGTCGTACCCACGACAGACCGTCATAGAGTCCATCACATAAGCCCTAGC R - R T V V P T T D R H R V H H I S P S D D G P S Y P R Q T V I E S I T - A L A P M T D R R T H D R P S - S P S H K P - . . . . . . 133355 ACCCCTGTCCCAAAGGACACATGTGAAGGATCGTCGTACTTACGACGGTCCGTCCTGCAC T P V P K D T C E G S S Y L R R S V L H P L S Q R T H V K D R R T Y D G P S C T H P C P K G H M - R I V V L T T V R P A . . . . . . 133295 AACCGTCATGCTAGACAGAGACCCTATTTCTAAGGGTCTCTCATTTTTTCCCAAGTGTCC N R H A R Q R P Y F - G S L I F S Q V S T V M L D R D P I S K G L S F F P K C P Q P S C - T E T L F L R V S H F F P S V . . : . . . . 133235 TTCAACGGACACAT : CTACACAACCGTTCTGGTTGTCAGAGACCCTGTTTCTAAGGGTCTC F N G H I : Y T T V L V V R D P V S K G L S T D T : S T Q P F W L S E T L F L R V S L Q R T H : L H N R S G C Q R P C F - G S . . . . . . 133143 TCATTTTTTTCCAAGTGTCCTTCAATGGACACATGTGACGGACCGTCGTACCCACGACAG S F F S K C P S M D T C D G P S Y P R Q H F F P S V L Q W T H V T D R R T H D R L I F F Q V S F N G H M - R T V V P T T . . . . . . 133083 ACCGTCCTGCATGACCGTCATAACGGTCAGAGAGCCCTCTCCTAAGGGTCTCCATTTTTT T V L H D R H N G Q R A L S - G S P F F P S C M T V I T V R E P S P K G L H F F D R P A - P S - R S E S P L L R V S I F . . . . 133023 CTCAAGTGTCCTACGACGGACATATACGACGGATCGTC L K C P T T D I Y D G S S S V L R R T Y T T D R S Q V S Y D G H I R R I V Maximal non-overlapping open reading frames (>= 64 codons): >C10HBa0111D09.1-_PGL-19_AGS-2_PPS_1 (133363 133222,133189 132987) (frame '2'; 345 bp, 115 residues) 1 ALAPLSQRTH VKDRRTYDGP SCTTVMLDRD PISKGLSFFP KCPSTDTSTQ PFWLSETLFL 61 RVSHFFPSVL QWTHVTDRRT HDRPSCMTVI TVREPSPKGL HFFSSVLRRT YTTDR PGL 20 (- strand): 134533 133922 AGS-1 (134533 133922) SCR (e 0.783) Exon 1 134533 133922 ( 612 n); score: 0.783 PGS (134533 133922) SGN-E350708+ 3-phase translation of AGS-1 (-strand): . . . . . . 134533 GGGGATTTCGTGCTTGTAGACAGTTCTGGGGTGCCTTGTTTTCCAGGCAAGCTCAGGTCT G D F V L V D S S G V P C F P G K L R S G I S C L - T V L G C L V F Q A S S G L G F R A C R Q F W G A L F S R Q A Q V . . . . . . 134473 AAATAGACTGGCCCCTACTTGATTACCCAAGTATTCCCTCATGGAGCAGTTGAGTAAAAC K - T G P Y L I T Q V F P H G A V E - N N R L A P T - L P K Y S L M E Q L S K T - I D W P L L D Y P S I P S W S S - V K . . . . . . 134413 GCCAAGGAGGGAGTGTGGTTTAAGTGGAATAGAGATAGAATAAAACTCTATTTTGGACAT A K E G V W F K W N R D R I K L Y F G H P R R E C G L S G I E I E - N S I L D I R Q G G S V V - V E - R - N K T L F W T . . . . . . 134353 AAAGCATCGGGGAATAAAGTTATAGAGGCATACCATCTTGATGAAGTCTGAGTAATCAAG K A S G N K V I E A Y H L D E V - V I K K H R G I K L - R H T I L M K S E - S R - S I G E - S Y R G I P S - - S L S N Q . . . . . . 134293 GGTTCTCAGTCGTGCCGCGGCAATAAATCAGGCGCTTCTTGGGAGGCAACCCAATACTTA G S Q S C R G N K S G A S W E A T Q Y L V L S R A A A I N Q A L L G R Q P N T Y G F S V V P R Q - I R R F L G G N P I L . . . . . . 134233 TAGTTTTTTTAGTAATGGTAGCATTTTTCTACTAATAGGTTTTAAATTTGCAGGCACATC - F F - - W - H F S T N R F - I C R H I S F F S N G S I F L L I G F K F A G T S I V F L V M V A F F Y - - V L N L Q A H . . . . . . 134173 ACCAGGAATTTCTGCAGAAAATTACTCTGCAGCAGTCACTGACGGACATATCGACGGACC T R N F C R K L L C S S H - R T Y R R T P G I S A E N Y S A A V T D G H I D G P H Q E F L Q K I T L Q Q S L T D I S T D . . . . . . 134113 GTCGCGCTTGCGACGGACCGTCGTATGCATCCGTCGTACCAGGTACGTTTTTCTGTTATT V A L A T D R R M H P S Y Q V R F S V I S R L R R T V V C I R R T R Y V F L L F R R A C D G P S Y A S V V P G T F F C Y . . . . . . 134053 TTGAATCTAGGGAAGACGTGACGGAACAAACGACGGTTCGTCACAACTGCGATGGACCGT L N L G K T - R N K R R F V T T A M D R - I - G R R D G T N D G S S Q L R W T V F E S R E D V T E Q T T V R H N C D G P . . . . . . 133993 CGTTGGGGAACCGTCGCGTGATTAGTGAAGTATACCCGACTCGACCCGGCGGAACCCTTT R W G T V A - L V K Y T R L D P A E P F V G E P S R D - - S I P D S T R R N P F S L G N R R V I S E V Y P T R P G G T L . . 133933 TTCTAAATCAGA F - I R S K S F L N Q Maximal non-overlapping open reading frames (>= 64 codons): >C10HBa0111D09.1-_PGL-20_AGS-1_PPS_1 (134195 133923) (frame '0'; 273 bp, 91 residues) 1 VLNLQAHHQE FLQKITLQQS LTDISTDRRA CDGPSYASVV PGTFFCYFES REDVTEQTTV 61 RHNCDGPSLG NRRVISEVYP TRPGGTLFLN Q >C10HBa0111D09.1-_PGL-20_AGS-1_PPS_2 (134298 134050) (frame '2'; 246 bp, 82 residues) 1 SRVLSRAAAI NQALLGRQPN TYSFFSNGSI FLLIGFKFAG TSPGISAENY SAAVTDGHID 61 GPSRLRRTVV CIRRTRYVFL LF- 3-phase translation of AGS-1 (+strand): . . . . . . 133922 TCTGATTTAGAAAAAGGGTTCCGCCGGGTCGAGTCGGGTATACTTCACTAATCACGCGAC S D L E K G F R R V E S G I L H - S R D L I - K K G S A G S S R V Y F T N H A T - F R K R V P P G R V G Y T S L I T R . . . . . . 133982 GGTTCCCCAACGACGGTCCATCGCAGTTGTGACGAACCGTCGTTTGTTCCGTCACGTCTT G S P T T V H R S C D E P S F V P S R L V P Q R R S I A V V T N R R L F R H V F R F P N D G P S Q L - R T V V C S V T S . . . . . . 134042 CCCTAGATTCAAAATAACAGAAAAACGTACCTGGTACGACGGATGCATACGACGGTCCGT P - I Q N N R K T Y L V R R M H T T V R P R F K I T E K R T W Y D G C I R R S V S L D S K - Q K N V P G T T D A Y D G P . . . . . . 134102 CGCAAGCGCGACGGTCCGTCGATATGTCCGTCAGTGACTGCTGCAGAGTAATTTTCTGCA R K R D G P S I C P S V T A A E - F S A A S A T V R R Y V R Q - L L Q S N F L Q S Q A R R S V D M S V S D C C R V I F C . . . . . . 134162 GAAATTCCTGGTGATGTGCCTGCAAATTTAAAACCTATTAGTAGAAAAATGCTACCATTA E I P G D V P A N L K P I S R K M L P L K F L V M C L Q I - N L L V E K C Y H Y R N S W - C A C K F K T Y - - K N A T I . . . . . . 134222 CTAAAAAAACTATAAGTATTGGGTTGCCTCCCAAGAAGCGCCTGATTTATTGCCGCGGCA L K K L - V L G C L P R S A - F I A A A - K N Y K Y W V A S Q E A P D L L P R H T K K T I S I G L P P K K R L I Y C R G . . . . . . 134282 CGACTGAGAACCCTTGATTACTCAGACTTCATCAAGATGGTATGCCTCTATAACTTTATT R L R T L D Y S D F I K M V C L Y N F I D - E P L I T Q T S S R W Y A S I T L F T T E N P - L L R L H Q D G M P L - L Y . . . . . . 134342 CCCCGATGCTTTATGTCCAAAATAGAGTTTTATTCTATCTCTATTCCACTTAAACCACAC P R C F M S K I E F Y S I S I P L K P H P D A L C P K - S F I L S L F H L N H T S P M L Y V Q N R V L F Y L Y S T - T T . . . . . . 134402 TCCCTCCTTGGCGTTTTACTCAACTGCTCCATGAGGGAATACTTGGGTAATCAAGTAGGG S L L G V L L N C S M R E Y L G N Q V G P S L A F Y S T A P - G N T W V I K - G L P P W R F T Q L L H E G I L G - S S R . . . . . . 134462 GCCAGTCTATTTAGACCTGAGCTTGCCTGGAAAACAAGGCACCCCAGAACTGTCTACAAG A S L F R P E L A W K T R H P R T V Y K P V Y L D L S L P G K Q G T P E L S T S G Q S I - T - A C L E N K A P Q N C L Q . . 134522 CACGAAATCCCC H E I P T K S A R N P Maximal non-overlapping open reading frames (>= 64 codons): >C10HBa0111D09.1+_PGL-20_AGS-1_PPS_1 (134267 134533) (frame '1'; 267 bp, 89 residues) 1 FIAAARLRTL DYSDFIKMVC LYNFIPRCFM SKIEFYSISI PLKPHSLLGV LLNCSMREYL 61 GNQVGASLFR PELAWKTRHP RTVYKHEIP >C10HBa0111D09.1+_PGL-20_AGS-1_PPS_2 (133932 134138) (frame '2'; 204 bp, 68 residues) 1 KKGSAGSSRV YFTNHATVPQ RRSIAVVTNR RLFRHVFPRF KITEKRTWYD GCIRRSVASA 61 TVRRYVRQ- PGL 21 (+ strand): 138450 139282 AGS-1 (138450 139282) SCR (e 0.757) Exon 1 138450 139282 ( 833 n); score: 0.757 PGS (138450 139282) SGN-E548861+ PGS (138451 138957) SGN-E303196+ 3-phase translation of AGS-1 (+strand): . . . . . . 138450 CCCTACTGGACCTTTATTTGGTAGGGTAAATGTAACTGAGTTATGAACTTTATATGGAAC P Y W T F I W - G K C N - V M N F I W N P T G P L F G R V N V T E L - T L Y G T L L D L Y L V G - M - L S Y E L Y M E . . . . . . 138510 CCCTTTGTATGAACCTTAATGTGAATACTCTATGAAAACAAAGGCTAGAACCGAGTGAGT P F V - T L M - I L Y E N K G - N R V S P L Y E P - C E Y S M K T K A R T E - V P L C M N L N V N T L - K Q R L E P S E . . . . . . 138570 ATGGTAAGGGAAGTAGTTATAGTTAAAGTATGTGGCTAGAATACAAAGTAAGCCCTTCAT M V R E V V I V K V C G - N T K - A L H W - G K - L - L K Y V A R I Q S K P F I Y G K G S S Y S - S M W L E Y K V S P S . . . . . . 138630 ATTCCTTAACTATGTGCCTACATGGGATATGTCCAAGTTCTACCATTGGCAAGTAGAACA I P - L C A Y M G Y V Q V L P L A S R T F L N Y V P T W D M S K F Y H W Q V E Q Y S L T M C L H G I C P S S T I G K - N . . . . . . 138690 ACCTCATCGGAGTAGGATAGAACTCTGGATTCCATGTTTTTCTACCATGGCCTATGTAGG T S S E - D R T L D S M F F Y H G L C R P H R S R I E L W I P C F S T M A Y V G N L I G V G - N S G F H V F L P W P M - . . . . . . 138750 TTATTGTCTATTCTCATCATGTGGGATACCCATTAGCATTATAGAATTTCTATAAAATTT L L S I L I M W D T H - H Y R I S I K F Y C L F S S C G I P I S I I E F L - N L V I V Y S H H V G Y P L A L - N F Y K I . . . . . . 138810 AGGTGGTGGTATGGGACACTATCTAGACATTGCACAATTGGCATTGAAGATATTGGTGAG R W W Y G T L S R H C T I G I E D I G E G G G M G H Y L D I A Q L A L K I L V R - V V V W D T I - T L H N W H - R Y W - . . . . . . 138870 AGTCCCTAGGTATTCTCCAAGACCATTACTTGAATGTCCTTTGTGTGATGAATGTCTCTT S P - V F S K T I T - M S F V - - M S L V P R Y S P R P L L E C P L C D E C L L E S L G I L Q D H Y L N V L C V M N V S . . . . . . 138930 AAGTGAACTATTGAACTAATGACTTATGTTATGAAGTATGTAAATGAATGAGTACCTAAT K - T I E L M T Y V M K Y V N E - V P N S E L L N - - L M L - S M - M N E Y L I - V N Y - T N D L C Y E V C K - M S T - . . . . . . 138990 CTGGAGTGACTTAAGGATTCCTTATTTAAAGTGTGCAGAGGGCAATAAGGGATGATCTCT L E - L K D S L F K V C R G Q - G M I S W S D L R I P Y L K C A E G N K G - S L S G V T - G F L I - S V Q R A I R D D L . . . . . . 139050 TCATGTCTTATCTATGGAATTCTTGAAAATGACCCTAGTTAGGACAGTTTGTTGATTCTT S C L I Y G I L E N D P S - D S L L I L H V L S M E F L K M T L V R T V C - F F F M S Y L W N S - K - P - L G Q F V D S . . . . . . 139110 TAAATGTGATGTAAACTTAGGATGTCTTAAATATTATTTAGGTAACCTTGAAGAGGGTGT - M - C K L R M S - I L F R - P - R G C K C D V N L G C L K Y Y L G N L E E G V L N V M - T - D V L N I I - V T L K R V . . . . . . 139170 ATGTGCATTATCTTCTAGGAGTACTTAAGTAAGTCTTTTGACAGCCTTGGTAAAGGAAAT M C I I F - E Y L S K S F D S L G K G N C A L S S R S T - V S L L T A L V K E M Y V H Y L L G V L K - V F - Q P W - R K . . . . . . 139230 GTCATATCTTGTATGTTATGTGTTTGGTGTATTGTAAGTGTGTATGTGTCTCA V I S C M L C V W C I V S V Y V S S Y L V C Y V F G V L - V C M C L C H I L Y V M C L V Y C K C V C V S Maximal non-overlapping open reading frames (>= 64 codons): >C10HBa0111D09.1+_PGL-21_AGS-1_PPS_1 (138592 138804) (frame '2'; 210 bp, 70 residues) 1 LKYVARIQSK PFIFLNYVPT WDMSKFYHWQ VEQPHRSRIE LWIPCFSTMA YVGYCLFSSC 61 GIPISIIEFL - 3-phase translation of AGS-1 (-strand): . . . . . . 139282 TGAGACACATACACACTTACAATACACCAAACACATAACATACAAGATATGACATTTCCT - D T Y T L T I H Q T H N I Q D M T F P E T H T H L Q Y T K H I T Y K I - H F L R H I H T Y N T P N T - H T R Y D I S . . . . . . 139222 TTACCAAGGCTGTCAAAAGACTTACTTAAGTACTCCTAGAAGATAATGCACATACACCCT L P R L S K D L L K Y S - K I M H I H P Y Q G C Q K T Y L S T P R R - C T Y T L F T K A V K R L T - V L L E D N A H T P . . . . . . 139162 CTTCAAGGTTACCTAAATAATATTTAAGACATCCTAAGTTTACATCACATTTAAAGAATC L Q G Y L N N I - D I L S L H H I - R I F K V T - I I F K T S - V Y I T F K E S S S R L P K - Y L R H P K F T S H L K N . . . . . . 139102 AACAAACTGTCCTAACTAGGGTCATTTTCAAGAATTCCATAGATAAGACATGAAGAGATC N K L S - L G S F S R I P - I R H E E I T N C P N - G H F Q E F H R - D M K R S Q Q T V L T R V I F K N S I D K T - R D . . . . . . 139042 ATCCCTTATTGCCCTCTGCACACTTTAAATAAGGAATCCTTAAGTCACTCCAGATTAGGT I P Y C P L H T L N K E S L S H S R L G S L I A L C T L - I R N P - V T P D - V H P L L P S A H F K - G I L K S L Q I R . . . . . . 138982 ACTCATTCATTTACATACTTCATAACATAAGTCATTAGTTCAATAGTTCACTTAAGAGAC T H S F T Y F I T - V I S S I V H L R D L I H L H T S - H K S L V Q - F T - E T Y S F I Y I L H N I S H - F N S S L K R . . . . . . 138922 ATTCATCACACAAAGGACATTCAAGTAATGGTCTTGGAGAATACCTAGGGACTCTCACCA I H H T K D I Q V M V L E N T - G L S P F I T Q R T F K - W S W R I P R D S H Q H S S H K G H S S N G L G E Y L G T L T . . . . . . 138862 ATATCTTCAATGCCAATTGTGCAATGTCTAGATAGTGTCCCATACCACCACCTAAATTTT I S S M P I V Q C L D S V P Y H H L N F Y L Q C Q L C N V - I V S H T T T - I L N I F N A N C A M S R - C P I P P P K F . . . . . . 138802 ATAGAAATTCTATAATGCTAATGGGTATCCCACATGATGAGAATAGACAATAACCTACAT I E I L - C - W V S H M M R I D N N L H - K F Y N A N G Y P T - - E - T I T Y I Y R N S I M L M G I P H D E N R Q - P T . . . . . . 138742 AGGCCATGGTAGAAAAACATGGAATCCAGAGTTCTATCCTACTCCGATGAGGTTGTTCTA R P W - K N M E S R V L S Y S D E V V L G H G R K T W N P E F Y P T P M R L F Y - A M V E K H G I Q S S I L L R - G C S . . . . . . 138682 CTTGCCAATGGTAGAACTTGGACATATCCCATGTAGGCACATAGTTAAGGAATATGAAGG L A N G R T W T Y P M - A H S - G I - R L P M V E L G H I P C R H I V K E Y E G T C Q W - N L D I S H V G T - L R N M K . . . . . . 138622 GCTTACTTTGTATTCTAGCCACATACTTTAACTATAACTACTTCCCTTACCATACTCACT A Y F V F - P H T L T I T T S L T I L T L T L Y S S H I L - L - L L P L P Y S L G L L C I L A T Y F N Y N Y F P Y H T H . . . . . . 138562 CGGTTCTAGCCTTTGTTTTCATAGAGTATTCACATTAAGGTTCATACAAAGGGGTTCCAT R F - P L F S - S I H I K V H T K G F H G S S L C F H R V F T L R F I Q R G S I S V L A F V F I E Y S H - G S Y K G V P . . . . . . 138502 ATAAAGTTCATAACTCAGTTACATTTACCCTACCAAATAAAGGTCCAGTAGGG I K F I T Q L H L P Y Q I K V Q - - S S - L S Y I Y P T K - R S S R Y K V H N S V T F T L P N K G P V G Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Tue Jul 25 14:26:17 2006