<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-18 05:53:18"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0021L02-xwr9p/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0021L02-xwr9p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0021L02-xwr9p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326806" ref_strand="+" ref_description="SGN-U326806        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr3:5081961-5084057 FORWARD | Aliases: K15M2.25(evalue: 5e-37, score=132) genbank/nr: gi|15229495|ref|NP_188128.1| hypothetical protein [Arabidopsis thaliana] gi|24030371|gb|AAN41348.1| unknown protein [Arabidopsis thaliana](evalue: 4e-35, score=132)">
      <seq>agagaaaatgcaaagtagtatgagaagctcaagaaggcatgtgttgaaggtattgagttcaaggatcatgacgatgagagtgttgaaatgaaggaagagaaaggtagagttagcatttgcattccacctaaaaatgctttgcttcttatgagatgtcgatctgatcctatgaaaatggcggatattgctaatcgattctgggaatcacctgctcgggaagaaactaatgagaaagaaatcggagaaaatgcggaggtgaaagaagtagaagatacagaaaacactgaatgcaatgtactacaggaaactagtgtttctgtagatctggtagaaaatgaagaagcagtagaagtcccagatagtagtaaggatgaagaaaagctcaaatgcgatgaattaacgccagaaacagaggaacaagatgaagaagacagtgagatgaagggacttgtagcagtagctgcagtagaagtaaactccattgttgatcaactccttgaatcagaaaaaaaagaagaagaagaagacagcagcattcagaggttttcatctttctcagaaaacgaagaagatgaaacattggaagaagaagagaggttcaaatcaattattaagaaggtgatcgaagaaacactcttgttagaacacattgatagagaagatgcaaaacaaattcaacacgaacacaaacacgaagaagaagcaaaatctgatgcagtattttcaaacaatgaaaacgaaaaagaatcgagaaaacaacagaacgaatcaattcttccagattgcttgcttctaatgatgtgtgagcccaagctatccatggaggtttctaaggaaacatgggtatacagcagcaccgaagtaaaacaagctaaaacagtgacgacaaagaagaagaagaatgaaattcccgaggatccaaagagaaggcgaagcattgacaagagtaaacaacaacatctcctcctccaaccaccaaggtcatcgtgttctttcccggcgaccggagtttcgccggcgatatccatggcaacgatgatagagcagaaactggtaaacgcagtggcttacgagccgttagtgttgacaaggtgcaagtcggagccgatgaggacggtggcggggggggacggctaagcttgtaccggagacttgtttctggaagaatatgaagattgagccacatcgacgagctacatttggattcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-xwr9p/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="1441" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1141" g_stop="1" g_length="1141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1141" r_length="1141" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-U326806" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1141</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1141" e_stop="1"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAAATGCAAAGTAGTATGAGAAGCTCAAGAAGGCATGTGTTTGAAGGTATTGAGTTCAAGGATCATGACGATGAGAGTGTTGAAATGAAGGAAGAGAAAGGTAGAGTTAGCATTTGCATTCCACCTAAAAATGCTTTGCTTCTTATGAGATGTCGATCTGATCCTATGAAAATGGCGGATATTGCTAATCGATTCTGGGAATCACCTGCTCGGGAAGAAACTAATGAGAAAGAAATCGGAGAAAATGCGGAGGTGAAAGAAGTAGAAGATACAGAAAACACTGAATGCAATGTACTACAGGAAACTAGTGTTTCTGTAGATCTGGTAGAAAATGAAGAAGCAGTAGAAGTCACAGATAGTAGTAAGGATGAAGAAAAGCTCAAATGCGATGAATTAACGCCAGAAACAGAGGAACAAGATGAAGAAGACAGTGAGATGAAGGGACTTGTAGCAGTAGCTGCAGTAGAAGTAAACTCCATTGTTGATCAACTCCTTGAATCAGAGAAAAAAGAAGAAGAAGAAGACAGCAGCATTCAGAGTTTTTCATCTTTCTCAGAAAACGAAGAAGATGAAACATTGGAAGAAGAAGAGAGGTTCAAATCAATTATTAAGAAGGTGATCGAAGAAACACTCTTGTTAGAACACATTGATAGAGAAGATGCAAAACAAATTCAACACGAACACAAACACGAAGAAGAAGCAAAATCTGATGCAGTATTTTCAAACAATGAAAACGAAAAAGAATCGAGAAAACAACAGAACGAATCAATTCTTCCAGATTGCTTGCTTCTAATGATGTGTGAGCCCAAGCTATCCATGGAGGTTTCTAAGGAAACATGGGTATACAGCAGCACCGAAGTAAAACAAGCTAAAACAGTGACGACAAAGAAGAAGAAGAATGAAATTCCCGAGGATCCAAAGAGAAGGCGAAGCATTGACAAGAGTAAACAACAACATCTCCTCCTCCAACCACCAAGGTCATCGTGTTCTTTCCCGGCGACCGGAGTTTCGCCGGCGATATCCATGGCAACGATGATAGAGCAGAAACTGGTAAACGCAGTGGCTTACGAGCCGTTAGTGTTGACAAGGTGCAAGTCGGAGCCGATGAGGACGGTGGC-GGGGGGGACGGCTAAGCTT</genome_strand>
        <mrna_strand>AGAGAAAATGCAAAGTAGTATGAGAAGCTCAAGAAGGCATGTG-TTGAAGGTATTGAGTTCAAGGATCATGACGATGAGAGTGTTGAAATGAAGGAAGAGAAAGGTAGAGTTAGCATTTGCATTCCACCTAAAAATGCTTTGCTTCTTATGAGATGTCGATCTGATCCTATGAAAATGGCGGATATTGCTAATCGATTCTGGGAATCACCTGCTCGGGAAGAAACTAATGAGAAAGAAATCGGAGAAAATGCGGAGGTGAAAGAAGTAGAAGATACAGAAAACACTGAATGCAATGTACTACAGGAAACTAGTGTTTCTGTAGATCTGGTAGAAAATGAAGAAGCAGTAGAAGTCCCAGATAGTAGTAAGGATGAAGAAAAGCTCAAATGCGATGAATTAACGCCAGAAACAGAGGAACAAGATGAAGAAGACAGTGAGATGAAGGGACTTGTAGCAGTAGCTGCAGTAGAAGTAAACTCCATTGTTGATCAACTCCTTGAATCAGAAAAAAAAGAAGAAGAAGAAGACAGCAGCATTCAGAGGTTTTCATCTTTCTCAGAAAACGAAGAAGATGAAACATTGGAAGAAGAAGAGAGGTTCAAATCAATTATTAAGAAGGTGATCGAAGAAACACTCTTGTTAGAACACATTGATAGAGAAGATGCAAAACAAATTCAACACGAACACAAACACGAAGAAGAAGCAAAATCTGATGCAGTATTTTCAAACAATGAAAACGAAAAAGAATCGAGAAAACAACAGAACGAATCAATTCTTCCAGATTGCTTGCTTCTAATGATGTGTGAGCCCAAGCTATCCATGGAGGTTTCTAAGGAAACATGGGTATACAGCAGCACCGAAGTAAAACAAGCTAAAACAGTGACGACAAAGAAGAAGAAGAATGAAATTCCCGAGGATCCAAAGAGAAGGCGAAGCATTGACAAGAGTAAACAACAACATCTCCTCCTCCAACCACCAAGGTCATCGTGTTCTTTCCCGGCGACCGGAGTTTCGCCGGCGATATCCATGGCAACGATGATAGAGCAGAAACTGGTAAACGCAGTGGCTTACGAGCCGTTAGTGTTGACAAGGTGCAAGTCGGAGCCGATGAGGACGGTGGCGGGGGGGGACGGCTAAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0021L02-xwr9p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345485" ref_strand="+" ref_description="SGN-U345485        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr3:5081961-5084057 FORWARD | Aliases: K15M2.25(evalue: 4e-28, score=122) genbank/nr: gi|15229495|ref|NP_188128.1| hypothetical protein [Arabidopsis thaliana] gi|24030371|gb|AAN41348.1| unknown protein [Arabidopsis thaliana](evalue: 3e-26, score=122)">
      <seq>aaaaaaacacagcttctctacacttacagacccccaaatccatggctacctacaacagcaataccaagaaaccattatcacattactgaaaactccttcatctcttcttttttgtatactttcttcttcaaatgaaactcaccaaatccatccttagtcctagccatgctcggcatgacccacctcttactcttcccacttctctcagtcggaagcttaaagctaatggcagtattaaaggcggacaatccccagctacgttttctactaccaccggaaagaaacgagggtcgagttttgataacccggaaccttcgtctccgaaggtgacttgtattggtcaggtgaaaatgaagacgaagaagaaagttaggcaaacacggaatttgtctaatagaaggagtgatataagtttcaggaagttggaagaagaaaaaaggggagttttgattcagaatcagaggagttctagtgtgcatttgcaggcgcaagatcaatgtgcggtggcgcatagaaatcagagatgggtacatttgccagtaacgatatatgaagctttgagagagtttagctgtttgtttccatgtcggtcttcgtgtttttcgaatgagaaaggaaaacaacaagataaagttaatggatctagagatgttgataataataatgggcagaggagatgtgaggatgttgttgctagatggctagttgcattacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-xwr9p/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="2237" stop="921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1937" g_stop="1221" g_length="717"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="717" r_length="717" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-U345485" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U345485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1937" e_stop="1221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAACACAGCTTCTCTACACTTACAGACCCCCAAATCCATGGCTACCTACAACAGCAATACCAAGAAACCATTATCACATTACTGAAAACTCCTTCATCTCTTCTTTTTTGTATACTTTCTTCTTCAAATGAAACTCACCAAATCCATCCTTAGTCCTAGCCATGCTCGGCATGACCCACCTCTTACTCTTCCCACTTCTCTCAGTCGGAAGCTTAAAGCTAATGGCAGTATTAAAGGCGGACAATCCCCAGCTACGTTTCCTACTACCACCGGAAAGAAACGAGGGTCGAGTTTTGATAACCCGGAACCTTCGTCTCCGAAGGTGACTTGTATTGGTCAGGTGAAAATGAAGACGAAGAAGAAAGTTAGGCAAACACGGAATTTGTCTAATAGAAGGAGTGATATAAGTTTCAGGAAGTTGGAAGAAGAAAAAAGGGGAGTTTTGATTCAGAATCAGAGGAGTTCTAGTGTGCATTTGCAGGCGCAAGATCAATGTGCGGTGGCGCATAGAAATCAGAGATGGGTACATTTGCCAGTAACGATATATGAAGCTTTGAGAGAGTTTAGCTGTTTGTTTCCATGTCGGTCTTCGTGTTTTTCGAATGAGAAAGGAAAACAACAAGATAAAGTTAATGGATCTAGAGATGTTGATAATAATAATGGGCAGAGGAGATGTGAGGATGTTGTTGCTAGATGGCTAGTTGCATTACAAG</genome_strand>
        <mrna_strand>AAAAAAACACAGCTTCTCTACACTTACAGACCCCCAAATCCATGGCTACCTACAACAGCAATACCAAGAAACCATTATCACATTACTGAAAACTCCTTCATCTCTTCTTTTTTGTATACTTTCTTCTTCAAATGAAACTCACCAAATCCATCCTTAGTCCTAGCCATGCTCGGCATGACCCACCTCTTACTCTTCCCACTTCTCTCAGTCGGAAGCTTAAAGCTAATGGCAGTATTAAAGGCGGACAATCCCCAGCTACGTTTTCTACTACCACCGGAAAGAAACGAGGGTCGAGTTTTGATAACCCGGAACCTTCGTCTCCGAAGGTGACTTGTATTGGTCAGGTGAAAATGAAGACGAAGAAGAAAGTTAGGCAAACACGGAATTTGTCTAATAGAAGGAGTGATATAAGTTTCAGGAAGTTGGAAGAAGAAAAAAGGGGAGTTTTGATTCAGAATCAGAGGAGTTCTAGTGTGCATTTGCAGGCGCAAGATCAATGTGCGGTGGCGCATAGAAATCAGAGATGGGTACATTTGCCAGTAACGATATATGAAGCTTTGAGAGAGTTTAGCTGTTTGTTTCCATGTCGGTCTTCGTGTTTTTCGAATGAGAAAGGAAAACAACAAGATAAAGTTAATGGATCTAGAGATGTTGATAATAATAATGGGCAGAGGAGATGTGAGGATGTTGTTGCTAGATGGCTAGTTGCATTACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0021L02-xwr9p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320664" ref_strand="+" ref_description="SGN-U320664        Tomato 200607 #1 [11 ESTs aligned] arabidopsis/peptide: AT3G15090.1 | Symbol: None | oxidoreductase, zinc-binding dehydrogenase family protein, low similarity to NOGO-interacting mitochondrial protein from Mus musculus (gi:14522884); contains Pfam profile: PF00107 zinc-binding dehydrogenases | chr3:5076756-5079123 FORWARD | Aliases: K15M2.24 (evalue: 6e-148, score=521) genbank/nr: gi|57900324|dbj|BAD87277.1| putative NOGO-interacting mitochondrial protein [Oryza sativa (japonica cultivar-group)] >gi|57899609|dbj|BAD87188.1| putative NOGO-interacting mitochondrial protein [Oryza sativa (japonica cultivar-group)] (evalue: 3e-153, score=545)">
      <seq>acactctttcactgaaccattcaacaatatgcatccattttccccaaatcactgaatttgctgctcaatttctttgcaaaacaatgatccgattgagatatcggaggattgagattggtactggtgatggaggaatttcgaatttaggttttggcaaaagaggtattgttacaagctgtagagctgtgttgttgccgcgatttggtggaccggagatgcttgagtttcgtgacaatgtatctgttcctgatctaaaacctaatcaagtgcttgttcgtgctcgtgctgtttcaatcaatccgcttgataccagaatgcgatcaggctatggacgttcaatttttgaaccacttctaccattgattttgggccgagatataagtggtgaagttgcagctgttggaaattctgtcaagtcacttacagttgggcaggatgtatttggtgctctgcatccaaccgctgtgaggggtacttatactgactatgctattcttgcggaagatgaacttgctccaaagccgggatcactttcacatgtggaagccagtgctatcccttttgctgctctaactgcttggcgtgcgctaaaaagtactgccagaataagagaggggcatagggtattggtcataggtggaggaggagcagtaggtttctctgcaattcagcttgctgtggctgcaggctgccatgtttctactacgtgtggaggagagagtataagtcgcattttagcagccggtgctgagcaggccattgactataccagtgaggatgctgaagtagcacttaaggggcattttgatgctgtcttggatacaattggtgtgccagatacagagagaatgggcattagccttttaaagaaaggtggacactacatgacgttacagggggaggctgcatcggtgactgataggcatggactagctattggtcttcctatggcagcagccatcttgctgaagaagcaaatccaatatcgatattctcatggaatagaatattggtggaattatatgagggctgatgctgagggtttacatgagatacgccggttatctgaggctgggaagcttcaactcccagtagataaaactttcccaatttcacaggtgagagaggctcacgaggccaaggatagacgacaaattcctggcaaagtggtgctagaaattgactgatttaactggacgatcttaaccaacagtgcgtggattcagtgcacaagtctataatatctcatgcaatctggtattacactgaatccttgatgcctattgcctcgtatacgatatcatctctttgcagaataaccagacccaacttacactctgttggcatctataggaagaaaactgtgcaacctgtaaattctcaggacattctcaatcttttttcttttcttccaagtatccgtcattgtttctatgttgcgttaaacatttaagtgagccatttatcgtgctcgtgacaggaaaatgcattgcgaatggtcgtactatgtcacaggggagatgtctgttattttttagaaaaaaaagaaatagataattatgttctgaatttggttgcaattttcaaatttacttactggtgaattaagggtgattgctaaatatccaagtatgtgtataatttgtctatttctaaaattgattagatctaaatttaacaaaagtaaattatatataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-xwr9p/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="12620" stop="5088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12320" g_stop="12007" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12006" i_stop="10579" i_length="1428">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10578" g_stop="10351" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="542" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10350" i_stop="10035" i_length="316">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10034" g_stop="9961" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="616" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9960" i_stop="8446" i_length="1515">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8445" g_stop="8286" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="776" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8285" i_stop="8139" i_length="147">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8138" g_stop="8019" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="777" r_stop="896" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8018" i_stop="7909" i_length="110">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="7908" g_stop="7800" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="897" r_stop="1005" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="7799" i_stop="6082" i_length="1718">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="6081" g_stop="5391" g_length="691"/>
          <reference_exon_boundary r_type="cDNA" r_start="1006" r_stop="1696" r_length="691" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1697" polyA_stop="1712"/>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-U320664" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1696</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12320" e_stop="12007"/>
          <exon e_start="10578" e_stop="10351"/>
          <exon e_start="10034" e_stop="9961"/>
          <exon e_start="8445" e_stop="8286"/>
          <exon e_start="8138" e_stop="8019"/>
          <exon e_start="7908" e_stop="7800"/>
          <exon e_start="6081" e_stop="5391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTCTTTCACTGAACCATTCAACAATATGCATCCATTTTCCCCAAATCACTGAATTTGCTGCTCAATTTCTTTGCAAAACAATGATCCGATTGAGATATCGGAGGATTGAGATTGGTACTGGTGATGGAGGAATTTCGAATTTAGGTTTTGGCAAAAGAGGTATTGTTACAAGCTGTAGAGCTGTGTTGTTGCCGCGATTTGGTGGACCGGAGATGCTTGAGTTTCGTGACAATGTATCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCGCTTGATACCAGAGTTAGTTCAATTATTTTTATTTTCCAATTTCATTTGTTTATTATGATTGATTGAAAATGTAGAGTGAAATTTACCTGTAGTATAATTTCATGTTGGTATTTGGAACTTATGTGTTTTTCAGCTGAGAAATCGATTTGTCTTGTTGGGATAATTATATGAATTCTATATGATTTAGACTATTTTTATGTTGGCTGTCATTTGCCTTAACCTATAGTTAGTTCAATGAGTGAATGGTGAAAAGCACACCTAAAATATTCAGTTTTTTGACTTTCATGACTATCACCAAATGTTTTTTTAAACACACCTCAGTTATCCGTTGTTCACTTTTTCTATTTGAAATATCGCCTTCGTTCGGATAGGAAAAGTTAACAACTGATAGTTGAGGTGTGTTATAATAAACATTTGGTAATAGTTAAAGTAGGGAACTCACATGCCGGATAGTTCAGGTATGAAACTCAAAAAGTCAAAATTTTGATCCTTCTGATTAGGAACGTTACCTAATTGACCTATAGTACAATTTTTTGTTGGTAATTGAAACTCAGTGTGTTTTTCAGTAGATATGTTTAATCCGTTATACCTCAATTTCTGTCTGGTTAGGATGATTATATGAATCATCTCTTATTTAGACTATGTTTTGTGCTGGCTGTCATTTCTGCTTTATTTTGTGTAGGACCAACTATACTTTTAACAAACTTAAATAGTTGGAGTTGTCTGACAATCTCAGAAAATTCAGGCGGGTCCATACAATGTGCTTGAGGTTGAAGGTGAATAGAGGGAAAGGGGACATGTGAAAAAATTGTTTAAGTTGGGGAAAATTTTTGTGCATTTAAGACCTAGCGATCTATGGTTTTCATTTCTTTCTTCCTTTTGTTTTTCTCTGAGAAAGCATAGACTTCCATTTTAGAGAATTCTTGAAGTAATGATCTCTTAAACATAGTGGAGCATCTTTGATCTATGTAATTGATCCCTTAATTTTCTTTGTTTATGCACCACAAGGCAGTTGTTGAATAAGTAAACCACTTCTTAAAGTTGATTATGAACAAAGATTTTTCTGATCGTTCATTTATAATAAAAAATAAAGGTATAAGAACTTGTTTCACAGAAACCATGCTTCCAGATGAATACAGTATGAAGGGAGTGCAATGCAGATAACATCTAAAATAAAATGTCTTATATTTTTCTCGTCTACAATGATTCTGTACATGCGTCAATTCAATGTGGAACGATATTAGTTTGGCGGATACCATTCCGAATTTTTTAATTCTACTATTAAGAGCTGGTAATAGTTATAAAGCTTGTGCAAAGGTTTCCTCTCAATACTTTGAACTTATTTGTTCCTGGGAAGCTATGCCATAGAAATTGTGATCACAAATTCATCTTCACATTATTTTGCGTTGAGCATTTAGTAGATGCTTTAATATGTTTCAGATGCGATCAGGCTATGGACGTTCAATTTTTGAACCACTTCTACCATTGATTTTGGGCCGAGATATAAGTGGTGAAGTTGCAGCTGTTGGAAATTCTGTCAAGTCACTTACAGTTGGGCAGGATGTATTTGGTGCTCTGCATCCAACCGCTGTGAGGGGTACTTATACTGACTATGCTATTCTTGCGGAAGATGAACTTGCTCCAAAGCCGGGATCACTTTCACATGTGGTATGTTTTCTGTTTGGTTACATTTAGTCAGACCAACTTCCTATGAATACTTTTCTGCTCTAAATAATTTTTCTGGCTATTTGCGATCAGTTATAAAATCAGTGTCTATCTTGTTTCCTACTCCTTATACTGTTACTTTTATTGGATGCCCTCTCCACCCCTCAGCCTGCTGATTAAGTTATCAATTTCTGAAATTCATTGTTGTTGGATTAATATCCCTGTCAATTTTCACTCTTGTTATCTGCATCCTGTCACATCACATATCTTGTTTTTTTTACTACTTTAGCATGCTAAGGTTCTATATGTTGTTCCGCAGGAAGCCAGTGCTATCCCTTTTGCTGCTCTAACTGCTTGGCGTGCGCTAAAAAGTACTGCCAGAATAAGAGAGGGGTATGTTTTTATCAGATAGGTTAAATTTTTTCATCAGTGAAATAATTCTCTTTTCTCCATCTCTTATCACCCTTTGTGAAGGAGATGCAGGATGAAAGTAGTCTGTACTTCTACATCCAGTACTGGAGATGTGATTAATACGCACAATGTATGAATCTGACATCATCAGTTAGACTTGAATAATTACCTCTGAGAAAAAGGAAGTAAAATCTATGGCCTATGCAAGTATTACCATGCCATGAAAAGTAGTAATTTAGGAAGGTTTTCCTCTGCAATTATATTGCTGAGTCATAAGCATTTTCTAAAATTGTTGTGCATTTAAATTCTGAATTTCTGTTTTCCTGGGTTTGGCAGCAGACAGTTTCCACTTATAAAGAGGTTAACAGCTTCTAGGAAATTATGATCATTGAACTTTTTAAGCATGGCATGTGAGTCAAAGTATTTTAAGGGATTGAAACTTTACGACTATTTTGTGTTTTTCTTCATCAAATTACTTTTCCCACTTAGTTTTGGCGAAACACTGAAGTGATCAATAGATAAAGTTATTTACTGGGAGGTCTATGACCAACATTATATTCTTTCGAATGTAATTATGTAATAATGATTCTTACGTTGGAGTGTATATAAACTTTTGTAACTTGGAATTGCATAAAGAATTAAGTTCAAAAAACATTTATGTCGGGCATAACGGGAAAACGTGGAGTTGCTCTAATGCTGCTGAACAAGACTATCTTGTTCAGCAGACGAAATTGGTCAAAAGGATGGCTTTTCCTTTTTCTTTGAGAAACAGGATGTGGATTCATATGGATTGAAAACCTTAGCATATAATACTTGCTATTTATTGCTTATGTATATAAAATAATATAGCAGCTTACCTATTTATTGGGGGTAGCTGTTCAGTTCTTAGGTTCTGGATAAGTGTTCACTACACACCAAACTGAATTAGTTCAGTTTGGTGTTTCTAAAACAGCTCTTCCAGTGTGAATGAGAAATAAAACATCCTTATTTGCTCTTTCTTTAAATTTCATGAAGCTGGAAGAAGAGATGCTGAAGCTACTTTTTGCTAATATCAACTATGTGTATGATATTTTTGTTTTTGATCTCCCTTTCTTCATCATCGACCTAATCTATGCACTAGTACTGATTTAACTGTCTAGATGTATGTAGAAATTGCACTATAATAGGAGTTTTGACAGGAAAAAATTGAGAACACAGTTATCGTGCCTGTCATTTGATACTGGCAACTGGAATACAATTAGAACCATATCTTGTCATCCGTAGAATTATATACCTTCAGGTCTATAGATACCTTGAGGATTCTGAAGGAGGATATTCATGCTAAGAAGAATAAAAAATGAAGAAAACAAAATGGAAAAAAGAGTTGGTATCCTTTTACTTCATATTGAGCTCATGATAGTGAATATATGTTGATGGATAGAGACAATATGATGCCTCAAAATGATATATGTGTTTTGTTTATACTGATATCATTATTTCTCAATCAAATTACTTCAGGCATAGGGTATTGGTCATAGGTGGAGGAGGAGCAGTAGGTTTCTCTGCAATTCAGCTTGCTGTGGCTGCAGGCTGCCATGTTTCTACTACGTGTGGAGGAGAGAGTATAAGTCGCATTTTAGCAGCCGGTGCTGAGCAGGCCATTGACTATACCAGTGAGGTGACCTTGCAGTAGTAGTTCACGTGTTTGATTCCATCATGTTATTTTATTTCAACATGATATAGTTGATTGGTTTTTTAAATGGCATTATTGGTGTATTCTGCTCTCTGTCCTTTAGCTAGGGTTGACATGTTTGCTTGTTTACAGGATGCTGAAGTAGCACTTAAGGGGCATTTTGATGCTGTCTTGGATACAATTGGTGTGCCAGATACAGAGAGAATGGGCATTAGCCTTTTAAAGAAAGGTGGACACTACATGACGTTACAGGTTAGGAGCTATCTTACCTTTGTAACCGTGAATCTTCCACTATTTTTTCTTATAAATGCCGAAAAATTGCCACACAGTCTTAAGCAAGATTTCCTGTTCTTTGCGCATAGGGGGAGGCTGCATCGGTGACTGATAGGCATGGACTAGCTATTGGTCTTCCTATGGCAGCAGCCATCTTGCTGAAGAAGCAAATCCAATATCGATATTCTCATGGAATAGGTATTGAGATCTCCTGTAGTTTCTTTGAACTGTTTGGCAGAAATGGGTTTTTCCTGGGTAATTATGAAAATTTTAGAACACCCTTTATCCAAAAACAGGAAGCGAAAAAAGCGAACATGAAAGTTTAATTCATCCCTAACAATATGATATTTTTTTAATTTTTTTTTTAATTTTGTGTTTCTTCTCTCTCATAAAAATAGATATGTTCTTCCTATATGGCAGTGAATTTCAAAACAAAGTAGATAGCATAGCAGGAAAAATAGATTGGTGAAGTTGTAGGTACCATCTCATTATTAGGTGCAACTCCAATCAGATTCTGATTTAGAGACTGTTTGGGTTGGCTTATTTTAGGTGCTTTTAAGCACTTTTAGAGTGTTTGGTAAGTTAAAAAAGTGCTTATAAGCACTTAGTTTTAAGCTAAAATTTCTAGCTTATGGCTTTTGGTGTACAAGTCAAAAATGAAAAGCCAATCCAAACTATTGGTTGAAGAGGTCAGCAGAGGTTATTGTCTGAATAATAGTAGCTAAAGCAACCAGAGAGCTGTTTTAGATTGACCTGGGTTGTGATGTTAACACATCTTTTAAGGCAAGAGGTAAACCAGGGGATGATACCTTCTTCATCTATTTAAAAAATTGTGATGCTCTTTTCAAGTGTATACTATAGTCATTCCGATATGGCAATGACCTTATTTTTTGGAATGGTATAGATATTAGCATATTTCATGCGTATTAACAGGTTTTAGAAGGGCTTTTCAGTGAGAATGACATAGAGATCACTGATCTTCATTAAAGTGGATAAGATGAAGAAACTTTCTTCCATTTTGTGACATCATATACTTTATTTAAAGTAGACGGTGAAGTCATTCTGATATTTTATGACCTTACCATATAACAGATTTTAGAAGGTGTAAGTGAGAATAACATAACAAGCCTGACCTCCATTCTTGTTAATTGGGCTCTCTCTCTTTCTCCTCCTCCTCATTCACAAAGGTTTTCTACGAGGAATAACCTTTGGGTAGTTCAGGACAAATAAGGTATGCAGATTTGTTGAGGTGATTTTGTTCCTAAATCCTATTTGATAGTTCTCGATTTCTATTGTTGATAAAAGCAATTAATTTTATTGATATATTGGGAAACAGACCTGCTGAGTGGACCGAATCACTATGATTGATAATTTTCTAATATATTGTTCTCTGGAGGAGATAGTCTAGCTTTGACCAATATCTAATCTAGATTCCATTCAAATGAACCGCTGGGTGGTCCGAATCAGTTTGGATTGACCTTGATCATCTTTTCACATTTTCATTTATTTTAGAGATATTGATCTCTTTATTATGATAGGCTAATAACGATAAAGTATGCCCAGGGTAACTCTCACTTCAGGTTTCAAAGTGCAGAAACTTCATTCTTTTGTAGCGTGTGACCGCCTTTTTTTTAAAAAAAAAAAAAAGCATGTGACGTGTTTAGAGTGCTTGGAAGAGTGTGGCTGTAGTCGATCACCATGAGAGCATCCTACTACTCATCTGATGTTTCAGTTGGAGAGAGAGAGAGAAATGTTTTTTTGGGGTCATTCATCTGACATTTTGAGTTAAATTTTGTGGCTTGTCTATTATTTGGTATTTATTATTGTTAATAGCTTGAGACTGAAGTGTCAAAAGCTGTGCTATTGAGCCTTATAGGTGCTTTAACTATTGCATTTCTTGTGTTTGCATGATACAGAATATTGGTGGAATTATATGAGGGCTGATGCTGAGGGTTTACATGAGATACGCCGGTTATCTGAGGCTGGGAAGCTTCAACTCCCAGTAGATAAAACTTTCCCAATTTCACAGGTGAGAGAGGCTCACGAGGCCAAGGATAGACGACAAATTCCTGGCAAAGTGGTGCTAGAAATTGACTGATTTAACTGGACGATCTTAACCAACAGTGCGTGGATTCAGTGCACAAGTCTATAATATCTCATGCAATCTGGTATTACACTGAATCCTTGATGCCTATTGCCTCGTATACGATATCATCTCTTTGCAGAATAACCAGACCCAACTTACACTCTGTTGGCATCTATAGGAAGAAAACTGTGCAACCTGTAAATTCTCAGGACATTCTCAATCTTTTTTCTTTTCTTCCAAGTATCCGTCATTGTTTCTATGTTGCGTTAAACATTTAAGTGAGCCATTTATCGTGCTCGTGACAGGAAAATGCATTGCGAATGGTCGTACTATGTCACAGGGGAGATGTCTGTTATTTTTTAGAAAAAAAAGAAATAGATAATTATGTTCTGAATTTGGTTGCAATTTTCAAATTTACTTACTGGTGAATTAAGGGTGATTGCTAAATATCCAAGTATGTGTATAATTTGTCTATTTCTAAAATTGATTAGATCTAAATTTAACAAAAGTAAATTATATAT</genome_strand>
        <mrna_strand>ACACTCTTTCACTGAACCATTCAACAATATGCATCCATTTTCCCCAAATCACTGAATTTGCTGCTCAATTTCTTTGCAAAACAATGATCCGATTGAGATATCGGAGGATTGAGATTGGTACTGGTGATGGAGGAATTTCGAATTTAGGTTTTGGCAAAAGAGGTATTGTTACAAGCTGTAGAGCTGTGTTGTTGCCGCGATTTGGTGGACCGGAGATGCTTGAGTTTCGTGACAATGTATCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCGCTTGATACCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGATCAGGCTATGGACGTTCAATTTTTGAACCACTTCTACCATTGATTTTGGGCCGAGATATAAGTGGTGAAGTTGCAGCTGTTGGAAATTCTGTCAAGTCACTTACAGTTGGGCAGGATGTATTTGGTGCTCTGCATCCAACCGCTGTGAGGGGTACTTATACTGACTATGCTATTCTTGCGGAAGATGAACTTGCTCCAAAGCCGGGATCACTTTCACATGTG............................................................................................................................................................................................................................................................................................................................GAAGCCAGTGCTATCCCTTTTGCTGCTCTAACTGCTTGGCGTGCGCTAAAAAGTACTGCCAGAATAAGAGAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATAGGGTATTGGTCATAGGTGGAGGAGGAGCAGTAGGTTTCTCTGCAATTCAGCTTGCTGTGGCTGCAGGCTGCCATGTTTCTACTACGTGTGGAGGAGAGAGTATAAGTCGCATTTTAGCAGCCGGTGCTGAGCAGGCCATTGACTATACCAGTGAG...................................................................................................................................................GATGCTGAAGTAGCACTTAAGGGGCATTTTGATGCTGTCTTGGATACAATTGGTGTGCCAGATACAGAGAGAATGGGCATTAGCCTTTTAAAGAAAGGTGGACACTACATGACGTTACAG..............................................................................................................GGGGAGGCTGCATCGGTGACTGATAGGCATGGACTAGCTATTGGTCTTCCTATGGCAGCAGCCATCTTGCTGAAGAAGCAAATCCAATATCGATATTCTCATGGAATAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATTGGTGGAATTATATGAGGGCTGATGCTGAGGGTTTACATGAGATACGCCGGTTATCTGAGGCTGGGAAGCTTCAACTCCCAGTAGATAAAACTTTCCCAATTTCACAGGTGAGAGAGGCTCACGAGGCCAAGGATAGACGACAAATTCCTGGCAAAGTGGTGCTAGAAATTGACTGATTTAACTGGACGATCTTAACCAACAGTGCGTGGATTCAGTGCACAAGTCTATAATATCTCATGCAATCTGGTATTACACTGAATCCTTGATGCCTATTGCCTCGTATACGATATCATCTCTTTGCAGAATAACCAGACCCAACTTACACTCTGTTGGCATCTATAGGAAGAAAACTGTGCAACCTGTAAATTCTCAGGACATTCTCAATCTTTTTTCTTTTCTTCCAAGTATCCGTCATTGTTTCTATGTTGCGTTAAACATTTAAGTGAGCCATTTATCGTGCTCGTGACAGGAAAATGCATTGCGAATGGTCGTACTATGTCACAGGGGAGATGTCTGTTATTTTTTAGAAAAAAAAGAAATAGATAATTATGTTCTGAATTTGGTTGCAATTTTCAAATTTACTTACTGGTGAATTAAGGGTGATTGCTAAATATCCAAGTATGTGTATAATTTGTCTATTTCTAAAATTGATTAGATCTAAATTTAACAAAAGTAAATTATATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0021L02-xwr9p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323119" ref_strand="+" ref_description="SGN-U323119        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: | Symbol: None | exonuclease family protein, contains exonuclease domain, Pfam:PF00929 | chr3:5074272-5076528 FORWARD | Aliases: K15M2.23(evalue: 1e-75, score=214) genbank/nr: gi|18400624|ref|NP_566499.1| exonuclease protein family [Arabidopsis thaliana] gi|21593535|gb|AAM65502.1| exonuclease, putative [Arabidopsis thaliana](evalue: 9e-74, score=214)">
      <seq>cgatgaggggcattttaggtccttcaacccttcacatgttgggagcttaaagcggatgttaaagtaattgagccaccacgcggagaggaagacaaaaatggcggatcaattgaaaaaccctaagaaacagtttcagctaaatcccaactgggctcagctccgtcaacaactcaacagcaatggcttccaaaaacaactgtcaaatccttcagaaacagaaaatcctaattccatattaggaaagcgcaaaagcaggcccagtgatgattccggagatgctacgcctaatcctcttactccaacttcatcggattcaagtgttacagatgtgatagggatggattgtgaaatggttggcgtaagctctgtgggaaacagaagtgctcttgggcgagtcacactgttaattgcaggtcaaccaatggggaaatgtgatatatgacgaatatgttcgtccagttgaacgtgttgttgacttccgcaccaaaatcagtggtattagacctcagcacttaaagaaagcaaaagatttccgcgttgttcagaaggaggtggcagaactaataaagggacggattcttgttggccatgctctgcgaaatgattttaaggccttgttattaggccatcaaaagcaggatattcgtgacacttctgaatataagcattttctaagggaaggacgcagtcgtgcactacggaaccttgctactgaagtccttggagtggagatacaaaatggagagcattgcccaatagaggatgcccgtgctgctatgatgctttacctaaagcacagaaaagaatgggaaaagagcatcaaggactttgcaagactgaaggagaaacagaaaaagcgtaaaccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-xwr9p/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="20192" stop="15146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19892" g_stop="19727" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19726" i_stop="19650" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19649" g_stop="19577" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="239" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19576" i_stop="19508" i_length="69">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19507" g_stop="19429" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="318" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19428" i_stop="18117" i_length="1312">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18116" g_stop="18032" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="403" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18031" i_stop="17566" i_length="466">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17565" g_stop="17447" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="522" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17446" i_stop="16238" i_length="1209">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16237" g_stop="16149" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="611" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16148" i_stop="16076" i_length="73">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16075" g_stop="16011" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="676" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="16010" i_stop="15896" i_length="115">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15895" g_stop="15817" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="677" r_stop="755" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="15816" i_stop="15570" i_length="247">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="15569" g_stop="15443" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="756" r_stop="882" r_length="127" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-U323119" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>882</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U323119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19892" e_stop="19727"/>
          <exon e_start="19649" e_stop="19577"/>
          <exon e_start="19507" e_stop="19429"/>
          <exon e_start="18116" e_stop="18032"/>
          <exon e_start="17565" e_stop="17447"/>
          <exon e_start="16237" e_stop="16149"/>
          <exon e_start="16075" e_stop="16011"/>
          <exon e_start="15895" e_stop="15817"/>
          <exon e_start="15569" e_stop="15443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGCAGGGGCATTTTAGGTCCTTCAACCCTTCACATGTTGGGAGCTTAAAGCGGATGTTAAAGTAATTGAGCCACCACGCGGAGAGGAAGACAAAAATGGCGGATCAATTGAAAAACCCTAAGAAACAGTTTCAGCTAAATCCCAACTGGGCTCAGCTCCGTCAAGTATTCTCTCTCTGTTTCTAACCAAGTTTATTTTGTAATTTATTTGTGATTAAGCACTCAATTTCTTTGTTCTGCAGCAACTCAACAGCAATGGCTTCCAAAAACAACTGTCAAATCCTTCAGAAACAGAAAATCCTAATTCCATATTAGGTATATCTCCATTTTTATAATTTTCTTTTTTTTTGGTTCTGAGTTGAGTTTTTTTGGTTGCTATTGTAGGAAAGCGCAAAAGCAGGCCCAGTGATGATTCCGGAGATGCTACGCCTAATCCTCTTACTCCAACTTCATCGGATTCAAGGTGAGTATTAAAAAGGTCTTTTTTTTTGGGTCAGCGTACATTATTTGCTTAGATACACCTTTTATAAAAGATAATAAGAAACTCGTTTAGTTAGGATTTTTATCTACAACACCTGAGTATGTGTGATCTAAATCAAGTTACAATAGATAGTGACTGAAATTGAAGGAATAAGAACGTACAACAGCAATGCTACAATTAGTACTACGGAACGATAAGTGAAACCTATGATGCTCGAACTCTTTAAAAATGTTAGTGGCTGCGTGTTGGATTCTCCAAAGTAGTGTATTTTTGGCAGAAGTCGACGCGGGTGCAACATCAAAGTGAAGAGTCTGCCTAACTTTGAGTGAGTTCTAGTCTGCGTCCTCCATAATCTTCTATATTCTGTATGAGGTTATGTCCTCGGTAAGCTAAAGCTGCACCATGTCCTATTTAATAACCTTTTCCTCAATACTTTTTGGCATAGCACCGACCACTACCTCTCCTGAAACCATCTATAAAGCCAATCTCTCACACCTTCGCATTGAGACATCCGTGCATCTTCTCTAAATATGTCCGAACCATCTTAAATTTGCCTCCTATATCTTGTCCTCCACCCCTCCACCAAGGCCGCTCCCACCTTGTCGTGGATATCTTCATTTCTAATCTTAATTCTCCTTGTATGCCTGCGTATCCATTTTTGCAATTTCCATCTTCTGAACGTGAGGGTTGTTTACTTTCTTTTTATTTTTTAATAAAATACATTCTAGTGTGCTTATAGCAAAAAATACAACTTAATTTTTATAGGATGCACAGTCATCTTTCAGTTCCCATTTAGGTCCATCGTTGTAAGTAATCTGATCATACGAGTAAAAGAGCCCATCATTTGTACATAGCCAATAAATATTTGTCGCGCTTGAAGTGTCTCGTTGTGGATCAAATGCTTGAAAACATGAAATTGGAGGACCATGGTGTAGTTTACAAAAGTAGGCAACATTTGCTCCTTGCAACACAGTCAGTCTAACTACCACTTAGTAGAACTTGCCTTAAATTTCTTGGTGGCATATTTTAGTCACACAAGACTCTGGAAAAGCTTATTTTCAATAAGTTATGAAATGATAACTATACCTAAATTTCTATGTTATTTTAACATTTGCAGGAAATTAGAAAGATTTTATTTTTAACTGGTCACAACATTAAAATACAGTCGAAATCTCACTTTTCTATTCTTATTTAAGCCTCCTCGAGTTCAAGTCTGATTGAGTATTTTTTTTTATTATTAATTGGATAATTATTTTATTACTGTTCAATAATTTAATCGTTAGCTCCATGACAGTGTTACAGATGTGATAGGGATGGATTGTGAAATGGTTGGCGTAAGCTCTGTGGGAAACAGAAGTGCTCTTGGGCGAGTCACACTGGTATTCAGTCTTACTTTCTCATTTACTTAAATACTGGTGATTTTAAAACATATGTTACTTCACTACATTTGACAAATGGTTTTACTAACAATTGTTTCAGTTGCTTCCCCAGTTTAACTTGATGCTTTTGATTATTAGTTACAAGCTTCTATTGCACTATGATTTTCATAACTAAGCTGTTTATATCCTATAATAAATTCTCTTCTTGCTGTTTTTTTGCCTTCTGAGCATATGCCACACACAGAATTATAAATAATTGTTTGTTTTTATGGGTGCTTGTGAACTTATAGTACACTAATTATTGATGTCGCTATATTAAAGCTTCATCTTGTTTACCTATAAAACATAATTTGCCTTATTTTGATTATTCGGGTACATTCCATTAGTTCTTCTGTGTATTTGAACCTACAATTTTCTTGTAAGCTTGTTTGTTCGTCTTATACATGAACAGTTAAATGGAAACCAGTTAATTGCAGGTCAACCAATGGGGAAATGTGATATATGACGAATATGTTCGTCCAGTTGAACGTGTTGTTGACTTCCGCACCAAAATCAGTGGTATTAGACCTCAGCACTTAAAGAAAGGTTGGTTTCACTTCACCCCTTACATTTGAAAAGATACCAACAGAAGGAAAAGTTTTTAGTCTGGTCTCTTGAAAGAATAATGACTACAAAAAAAACTATTCTTGCTAAAGAAGCAGAAAATTGAAAAACATTTCTTTTATTATACTTTAGCATGTTAAGTTGGGTCATCTGAGAAGCAGCGTGGTGTTAATTTAGCACGTTAAGTTGCAGCTGTTTTAGAAGCATTGTGGAATTTTCTCGCTCCTATTCTTCTAATTTTGATGCTTAATGGTTTTCCATTTGGACGGCGAAATGAATGTACTATCACGTGTAGTCAGAATGGAAATTTAAGCTCTTTTAAGAATGTTGACATGAGAAATTCCCATCGGCCATCACAGTGCTCACAGATCATCAACATATTTTAGTAGGTGTTTGTCCATGTTTCTTTGTGAATGAAAAAAAGTAGTTTTTGTTTTCAAAATGAAAAACGATATTTAGAAATTAGAGTTGTGTTACTTTAACTTCATAAAAGAAAAAAGACATTAGAGTTGTGTTTTTTTTAAAATAATTTAGAGTTGTTTTGAATTTTTGCGAGTAATTGGGAGTTAAAAAAGCGAAATTGTTGTTTGTAGTGGAAAAAAGTATAATAATTTCATGGCCAAATGCCTTAGAATTTGATGTTCTGGAATTTTAACTAATTGTTATTAAAGATTTTGAGTCCATCTCATTTTCCTGAAAGAGAGTTCAATGGCTCGTGCACATTCAAGCTACAGAGGTTTGTCCAGAATGCATGAGAGGAAGTTTGGCTAAATGCCCTGAGGGATTCAATATAAGTTTAAAATAAGTAGGGGCTGTGTCCAATGTCCATCAATCTCTAACTAAAGGATAAGTTTGTTTCCATTTCTTTTTGATTAGAAGATTTGTATATAAGAAAATTATATTGCAATCTTTGTTGGACAACATCACTAGTTAATGGTTCAAAGTTGAATAGACTGTCAGTTTATTTCTAATCTGTAGGTTTATATTTTCAATTTGGATTAATTGTTTTTAGCAGTCAGTTTGAAGTTTGACTAGGTGTTAGTTTGACTTCGATCTGGACAAGTATTTATGGACAGTGTAATTCCATTTTTTTGATACTTTCTGCAAGTTATATGCTCAAACCAATATCAAAAACATTTTGTTTGGTTTGTGGTTTGCCCAAGTAATGTGCTCTTCTGATGTCATCTGCAGCAAAAGATTTCCGCGTTGTTCAGAAGGAGGTGGCAGAACTAATAAAGGGACGGATTCTTGTTGGCCATGCTCTGCGAAATGATTTTAAGGTATCTGCGCACCTTCTCAGACTTTGCATCTAGAGTACTTTCTATGACTAAATTGGAAATGTTTCCTGTACAGGCCTTGTTATTAGGCCATCAAAAGCAGGATATTCGTGACACTTCTGAATATAAGCATTTTCTAAGGTAACCTTCGCACCCACCTCCCCACCAAAAAAGAAATTCTTGATTACTTGCAACTTTCAACTTCTAGCTTGTATTTTGGCTGCAATACATTGCTGACATTGGGCTGATAAATTAGGGAAGGACGCAGTCGTGCACTACGGAACCTTGCTACTGAAGTCCTTGGAGTGGAGATACAAAATGGAGAGCATTGCCCAGTTAGTTCTATGCTTTTTAATGACTTCATTGTGCTCTTTTCCTTTCGTTTCTAGTAGTTTCTCCTTCTAAACAGTGGAATCCTTACTGTATGTGCTGTAGTATACTGTTATGGACCTCCAAGTATTATCTTGTGTTTGAATTTGGCTTTACAGGCTGAATCTAAAAAAGAATTCAATCTTGTAGCAGCATGACAGTTGATTATATCCTAATGAATTCTAACATGTATCACATCTGCATATTTTGCAGATAGAGGATGCCCGTGCTGCTATGATGCTTTACCTAAAGCACAGAAAAGAATGGGAAAAGAGCATCAAGGACTTTGCAAGACTGAAGGAGAAACAGAAAAAGCGTAAACCAAAGAAAAAAAAGAGGA</genome_strand>
        <mrna_strand>CGATGAGGGGCATTTTAGGTCCTTCAACCCTTCACATGTTGGGAGCTTAAAGCGGATGTTAAAGTAATTGAGCCACCACGCGGAGAGGAAGACAAAAATGGCGGATCAATTGAAAAACCCTAAGAAACAGTTTCAGCTAAATCCCAACTGGGCTCAGCTCCGTCAA.............................................................................CAACTCAACAGCAATGGCTTCCAAAAACAACTGTCAAATCCTTCAGAAACAGAAAATCCTAATTCCATATTAG.....................................................................GAAAGCGCAAAAGCAGGCCCAGTGATGATTCCGGAGATGCTACGCCTAATCCTCTTACTCCAACTTCATCGGATTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTACAGATGTGATAGGGATGGATTGTGAAATGGTTGGCGTAAGCTCTGTGGGAAACAGAAGTGCTCTTGGGCGAGTCACACTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATTGCAGGTCAACCAATGGGGAAATGTGATATATGACGAATATGTTCGTCCAGTTGAACGTGTTGTTGACTTCCGCACCAAAATCAGTGGTATTAGACCTCAGCACTTAAAGAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAGATTTCCGCGTTGTTCAGAAGGAGGTGGCAGAACTAATAAAGGGACGGATTCTTGTTGGCCATGCTCTGCGAAATGATTTTAAG.........................................................................GCCTTGTTATTAGGCCATCAAAAGCAGGATATTCGTGACACTTCTGAATATAAGCATTTTCTAAG...................................................................................................................GGAAGGACGCAGTCGTGCACTACGGAACCTTGCTACTGAAGTCCTTGGAGTGGAGATACAAAATGGAGAGCATTGCCCA.......................................................................................................................................................................................................................................................ATAGAGGATGCCCGTGCTGCTATGATGCTTTACCTAAAGCACAGAAAAGAATGGGAAAAGAGCATCAAGGACTTTGCAAGACTGAAGGAGAAACAGAAAAAGCGTAAACCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0021L02-xwr9p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313687" ref_strand="+" ref_description="SGN-U313687        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc finger (C3HC4-type RING finger) family protein, similar to RING-H2 finger protein RHG1a GI:3822225 from (Arabidopsis thaliana); contains Pfam profile PF00097: Zinc finger, C3HC4 type (RING finger) | chr1:19840808-19843895 FORWARD | Aliases: F12M16.10, F12M16_10(evalue: 1e-10, score=63.9) genbank/nr: gi|20466834|gb|AAM20734.1| unknown protein [Arabidopsis thaliana](evalue: 3e-09, score=65.1)">
      <seq>ttacaagaaaaataacgtggccaattaataggagaatcaaacagccaattagcagttaaccgtaaaatttccacttttccattgaaacctctcttcaattatcgctttgccctttttgcttctttgatccatcgatcgtctgatcaacctttaattggtgtttttaaactgagcatttttgtgccttttatgtttaaaggcaacaatcaaggaagaagttgatatttggatgataaaaaggaatcaccccacaacattgtaaccacgaagataggctaaaggagcatgtcacacagtaatcgcataattgatatggaagcagatcagcaaggtcaagagttttttcattcagcaccttgcatgttttacgggagcatagcggctttaccacagcctactgtccatgcagtagtaccagctcccgtaaatgctggtaatatatatttgcaccatgtatcagatcatcaagagggtcccttaacgtatggcttgacacagttcaatgggattcaacatcagcatcctgccagcaatcctgacctagctatttctgcttcaaatcattacaatccttacatggctgttccatccgcttctggagatttccctattccagtaaatcacgggccacttgatcggcttcatacaagttctcacaacatctttggaatgaatttcagatacggaagggacaatcattatatggacgatgtcagaggctcatataagagaaagatgctgaaggaattnctgcaaatcttcatatcatcatgctttggcagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-xwr9p/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="32076" stop="35174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32376" g_stop="32532" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32533" i_stop="32788" i_length="256">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32789" g_stop="32871" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="240" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32872" i_stop="34329" i_length="1458">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.788" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34330" g_stop="34874" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="783" r_length="543" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-U313687" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32376" e_stop="32532"/>
          <exon e_start="32789" e_stop="32871"/>
          <exon e_start="34330" e_stop="34874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAAGAAAAATAACGTGGCCAATTAATAGGAGAATCAAACAGCCAATTAGCAGTTAACCGTAAAATTTCCACTTTTCCATTGAAACCTCTCTTCAATTATCGCTTTGCCCTTTTTGCTTCTTTGATCCATCGATCGTCTGATCAACCTTTAATTGGTTAGTTTTTCATTGTATAATCGGACCCAATTTATCAAAGTTTCAAATATAATGTTTAATTTTGTGAATTTGGTAATGTGTAGCTATTTCTTGTTAATCTTGTTTTAAGCATGCATAGGCTATGGCAGGAAGCAATAATTTGTGGGGTTTCTTGTTGATTTTTAGTTTGATGATTATTGATCGCCATTCTGGTATCTGGGTTTTTTTTTTTCGCCTAAAAGATTTTTTTTTTTTTTTGGTTTTGTGACTTGTGTAGGTGTTTTTAAACTGAGCATTTTTGTGCCTTTTATGTTTAAAGGCAACAATCAAGGAAGAAGTTGATATTTGGATGATAAAAAGGTGAGGCTTCGGTTCTGCTGTATGTTTTCTTTTTCTCATCCATGAATTGCATAAGATTGTGTATCAGTTATTTATGTTACGTTGACCTTAACGATACTGGAAGATTATGTTCTTTTATGTGTCTTGCTTGGGTGTATGCCTGTCTAGTTTGGTTTTCCTTTTCTGGTGTTTGGGAAATAATCAACTCAATTGGAATGTTTTGATTTATATGTGTGTATGCATCCTGTTACTAAGTTGGCTTGAGAGAGGTGATTAGATAGGACATGACGCAGTTTCAGCTTACCGAGGACATGATAGGAGAGTGTGGAGGACATGGATTATGACAGAAGGTTGGTAGGTAGCAGTGCGCTGTCTTGTTGTCCGTACATATTAGTAGTTGTAGTATTGCTCCTGTAGTTTCTTGTTCTTCCACTTCTTTACTGTTTGTTGATTTCTTGTATCTCAATTATTGTTTTGTTTTGTTGTAGTTTTTGTTCTGTTTCGATATGTTGTTTCTTGTACTTCCGTTACTTCTTTCGTTGGACTGCATTGGACTGTTTCCATTGAGACGAGGATCTATCAGGAAGAACCTTTCTATCTCTTAGGTTGGGTAAGGTTTGAGTACTCTCTACCCTCTCCAGTTTGTTTATTAATCGTTGTTGTTGTTGTCGTGTAATTTCTAGGTAGTGTTTTTTCATGAGCATCAAACATTTGAATGAAAACTGTGTAATTTGTCTTGCCTCCTCGGGTAACCAAACATGACATAAGTTAATCTCGAAGTCTTAATGAGGGTTGGTGTTGTTTTAAAAAAACACACAACTAAAATCAAGATTTTATTTGGTGTGTTCCCAACTTGAAAATTTGCATCCGGGTTTGTCAATCTCACTTCCCTGCCTGAATATCTACCACAAGAATGTGAATCTCTCTATCTTCAGTGATATGGTGTTAAAGCTCTCTGACAGAACTGATATCCTACTTGATTTGTGGGATACATGAAGTTTAGATGGTTTGGCATCTTGAGAGATACCCTTCATGACTAGTGACTTCGCCAATGATCGGTTAAGGTGATTCTGAATGCAGAAAGAAGAGCTGGCTAAGTCTCCCCACATCATATTTATCTGGTTCATTATATTTACCACATGTAACTACTATAAGAAAAACATTTATGAGTTTTGTGGTTTTATTTTTCATTAGTGTTTTTATTGAGGTGATGATATGTGTTACCCAAGCTCAATTTTTCTGAATCAAAGATGTAATTCCTAAAGTTCTTGAATGAGAACTACTTAAGTTCTAGGTCAATATTGAACTTCACTTATTGGGATGAACATGGAGAAAGATATTGACATAAGCATGCATTGATAGATGTCCATTTGCATACAAAGTGATTATCAGCTAGCCATCTATCAAGTTTATGCAATTTCTTAGTCAATGATGTTACTAGGCTGCAGTATGTATTATAGCTTGTTCTCCTCCAAGCAGGAATCACCCCACAACATTGTAACCACGAAGATAGGCTAAAGGAGCATGTCACACAGTAATCGCATAATTGATATGGAAGCAGATCAGCAAGGTCAAGAGTTTTTTCATTCAGCACCTTGCATGTTTTACGGGAGCATAGCGGCTTTACCACAGCCTACTGTCCATGCAGTAGTACCAGCTCCCGTAAATGCTGGTAATATATATTTGCACCATGTATCAGATCATCAAGAGGGTCCCTTAACGTATGGCTTGACACAGTTCAATGGGATTCAACATCAGCATCCTGCCAGCAATCCTGACCTAGCTATTTCTGCTTCAAATCATTACAATCCTTACATGGCTGTTCCATCCGCTTCTGGAGATTTCCCTATTCCAGTAAATCACGGGCCACTTGATCGGCTTCATACAAGTTCTCACAACATCTTTGGAATGAA-TTCAGATTACGGAAGGAACAATCATTATATGGACGATGTCAGAGGCTCATATAAGAGAAAGAATGCTGAAGGAATTCCTGCAAATCTTCAATATCATCATGCTTTGGCAGG</genome_strand>
        <mrna_strand>TTACAAGAAAAATAACGTGGCCAATTAATAGGAGAATCAAACAGCCAATTAGCAGTTAACCGTAAAATTTCCACTTTTCCATTGAAACCTCTCTTCAATTATCGCTTTGCCCTTTTTGCTTCTTTGATCCATCGATCGTCTGATCAACCTTTAATTG................................................................................................................................................................................................................................................................GTGTTTTTAAACTGAGCATTTTTGTGCCTTTTATGTTTAAAGGCAACAATCAAGGAAGAAGTTGATATTTGGATGATAAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCACCCCACAACATTGTAACCACGAAGATAGGCTAAAGGAGCATGTCACACAGTAATCGCATAATTGATATGGAAGCAGATCAGCAAGGTCAAGAGTTTTTTCATTCAGCACCTTGCATGTTTTACGGGAGCATAGCGGCTTTACCACAGCCTACTGTCCATGCAGTAGTACCAGCTCCCGTAAATGCTGGTAATATATATTTGCACCATGTATCAGATCATCAAGAGGGTCCCTTAACGTATGGCTTGACACAGTTCAATGGGATTCAACATCAGCATCCTGCCAGCAATCCTGACCTAGCTATTTCTGCTTCAAATCATTACAATCCTTACATGGCTGTTCCATCCGCTTCTGGAGATTTCCCTATTCCAGTAAATCACGGGCCACTTGATCGGCTTCATACAAGTTCTCACAACATCTTTGGAATGAATTTCAGA-TACGGAAGGGACAATCATTATATGGACGATGTCAGAGGCTCATATAAGAGAAAG-ATGCTGAAGGAATTNCTGCAAATCTTC-ATATCATCATGCTTTGGCAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0021L02-xwr9p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329980" ref_strand="+" ref_description="SGN-U329980        Tomato 200607 #1 [3 ESTs aligned]">
      <seq>ggaagattatgttcttttatgtgtcttgcttgggtgtatgcctgtgtagtttgcttttccttttctggtgtttgggaaataatcaactcaattggagtgttttgatttatatgtgtgtttatgcatcctgttactaagttggcgagagagaggtgattagatagaacatgacacagtttcagcttaccgaggacatgataggagagtgtggaggacatggattatgacagaaggttggtaggtagcagtgtgctgtcttgttgtccgtacatattagtagttgtagtattgctcctgtagtttcttgttcttccacttctttactgtttgttgatttcttgtatctcaattattgttttgttttgttgtagtttttgttctgtttcgatatgttgtttcttgtactttcgttacttctttcgttggactgcattggactttttccattgagacgaggatctatcaggaagaacctctctatctcttaggttgggtaaggtttgagtactctctacccttcccagtttgtttattatcgttattgttgttctcatgtaatttctgggtagtgttttttcatgagcatcaaacatttgaatgaaagctgtgtaatttgtcttgcctcctctggtaaccaaacatgacataagttaatctcgaagtcttaatgagggttggtgttgtttttaaaaaacacacaactaaaatcaagattttatttggtgtgttcccaacttgaaaatttgcatccggggtttgtcaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-xwr9p/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="32670" stop="34033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32970" g_stop="33733" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="766" r_length="766" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-U329980" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U329980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32970" e_stop="33733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGATTATGTTCTTTTATGTGTCTTGCTTGGGTGTATGCCTGTCTAGTTTGGTTTTCCTTTTCTGGTGTTTGGGAAATAATCAACTCAATTGGAATGTTTTGATTTATATGTGTG--TATGCATCCTGTTACTAAGTTGGCTTGAGAGAGGTGATTAGATAGGACATGACGCAGTTTCAGCTTACCGAGGACATGATAGGAGAGTGTGGAGGACATGGATTATGACAGAAGGTTGGTAGGTAGCAGTGCGCTGTCTTGTTGTCCGTACATATTAGTAGTTGTAGTATTGCTCCTGTAGTTTCTTGTTCTTCCACTTCTTTACTGTTTGTTGATTTCTTGTATCTCAATTATTGTTTTGTTTTGTTGTAGTTTTTGTTCTGTTTCGATATGTTGTTTCTTGTACTTCCGTTACTTCTTTCGTTGGACTGCATTGGACTGTTTCCATTGAGACGAGGATCTATCAGGAAGAACCTTTCTATCTCTTAGGTTGGGTAAGGTTTGAGTACTCTCTACCCTCTCCAGTTTGTTTATTAATCGTTGTTGTTGTTGTCGTGTAATTTCTAGGTAGTGTTTTTTCATGAGCATCAAACATTTGAATGAAAACTGTGTAATTTGTCTTGCCTCCTCGGGTAACCAAACATGACATAAGTTAATCTCGAAGTCTTAATGAGGGTTGGTGTTGTTTTAAAAAAACACACAACTAAAATCAAGATTTTATTTGGTGTGTTCCCAACTTGAAAATTTGCATCC-GGGTTTGTCAATCT</genome_strand>
        <mrna_strand>GGAAGATTATGTTCTTTTATGTGTCTTGCTTGGGTGTATGCCTGTGTAGTTTGCTTTTCCTTTTCTGGTGTTTGGGAAATAATCAACTCAATTGGAGTGTTTTGATTTATATGTGTGTTTATGCATCCTGTTACTAAGTTGGCGAGAGAGAGGTGATTAGATAGAACATGACACAGTTTCAGCTTACCGAGGACATGATAGGAGAGTGTGGAGGACATGGATTATGACAGAAGGTTGGTAGGTAGCAGTGTGCTGTCTTGTTGTCCGTACATATTAGTAGTTGTAGTATTGCTCCTGTAGTTTCTTGTTCTTCCACTTCTTTACTGTTTGTTGATTTCTTGTATCTCAATTATTGTTTTGTTTTGTTGTAGTTTTTGTTCTGTTTCGATATGTTGTTTCTTGTACTTTCGTTACTTCTTTCGTTGGACTGCATTGGACTTTTTCCATTGAGACGAGGATCTATCAGGAAGAACCTCTCTATCTCTTAGGTTGGGTAAGGTTTGAGTACTCTCTACCCTTCCCAGTTTGTTTATT-ATCGTTATTGTTGTTCTCATGTAATTTCTGGGTAGTGTTTTTTCATGAGCATCAAACATTTGAATGAAAGCTGTGTAATTTGTCTTGCCTCCTCTGGTAACCAAACATGACATAAGTTAATCTCGAAGTCTTAATGAGGGTTGGTGTTGTTTTTAAAAAACACACAACTAAAATCAAGATTTTATTTGGTGTGTTCCCAACTTGAAAATTTGCATCCGGGGTTTGTCAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0021L02-xwr9p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U342030" ref_strand="+" ref_description="SGN-U342030        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc finger (C3HC4-type RING finger) family protein, similar to RING-H2 finger protein RHG1a GI:3822225 from (Arabidopsis thaliana); contains Pfam profile PF00097: Zinc finger, C3HC4 type (RING finger) | chr1:19840808-19843895 FORWARD | Aliases: F12M16.10, F12M16_10(evalue: 8e-39, score=157) genbank/nr: gi|56202174|dbj|BAD73652.1| C-terminal zinc-finger-like [Oryza sativa (japonica cultivar-group)] (evalue: 1e-38, score=162)">
      <seq>ttgaaagaaatactagacatcagaaccttcctaacatgagagttctgccagaagacggagtggcaatgctggatgtttcgggctaccatgaagttaacaatcccattgatcagcacagagatatgcgtttagacgtagatcacatgtcctacgaggagcttcttgcactgggggagcagattggcaatgtaacaactggattgtcagatgaaataatcgttaaccgcttgaaaacaagatcattttcgccccccgttattccttgcaccctggaaactgctgcatgtttggatcacgaagctgatttctgtgtcatatgccagactgactacaacaagcaagaaactataggaactcttgattgcgggcacgaatatcatgcagaatgcgtaaagaagtggttggttgtgaagaacacttgccctatctgcaaatccaccggattgtcaatagaaagaaaagatttgtgaaaacagggagttggttggttggtggatgaataattataagagtgggacattttgntctcttgttaaatatttgttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-xwr9p/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="35608" stop="38386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35908" g_stop="35963" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35964" i_stop="36092" i_length="129">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36093" g_stop="36191" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="155" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36192" i_stop="36368" i_length="177">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36369" g_stop="36536" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="323" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36537" i_stop="37860" i_length="1324">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37861" g_stop="38086" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="549" r_length="226" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-U342030" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U342030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35908" e_stop="35963"/>
          <exon e_start="36093" e_stop="36191"/>
          <exon e_start="36369" e_stop="36536"/>
          <exon e_start="37861" e_stop="38086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAAGAAATACTAGACATCAGAACCTTCCTAACATGAGAGTTCTGCCAGAAGACGTAAACTTTTCTCTGTTTGACCATATCTCGTTACTTCCTTTGTCATTATTATTGTCTAATTGATGCATTTGTTTGATGTAATAGAATTGAATTCTAATGGGTTTATCTCTTCATGGTTGCTATATGAAGGGAGTGGCAATGCTGGATGTTTCGGGCTACCATGAAGTTAACAATCCCATTGATCAGCACAGAGATATGCGTTTAGACGTAGATCACATGTCCTACGAGGTGAGCAATAGGTTTCTTGATTATATTGCTGTCTCAGATTTGTCTGATGGTTAATCAGTACTTGTGAAGTCTATTTTGTTTGTATGTTATGTATTATTTCGGAGTTATTGTCTGCTCTGCAATTTGTTTGCATAACATCTATAATAAAATTTCTGCAACTTTCAAATTCTATTTCAGGAGCTTCTTGCACTGGGGGAGCAGATTGGCAATGTAACAACTGGATTGTCAGATGAAATAATCGTTAACCGCTTGAAAACAAGATCATTTTCGCCCCCCGTTATTCCTTGCACCCTGGAAACTGCTGCATGTTTGGATCACGAAGCTGATTTCTGTGTCATATGCCAGGTATTAACACTAAATTATACTTTAAGTTGGATTAGATTTGCCTGTGACTTTTGCAGGGATCACTCTGGGGATGGCTCTACTTCAGTCTCCTTTTCTCCCGTCCATTTCATTTTAGGTGCTGATTAAGTACTCTAACAAAGACAAATCAGATGGGTGTAAGCTCTTGCTTAAACAATCACATTAGTAGGTTTTAGTTTGTTACTCCCCCTGTTTCAGTTTGTTTGCCTTTTCTTTTAAGTCCGTTTAAAAAAGAATGCCTGCTCCCTTTTCTGATAATTCTTTAATTCTAACTTTCCACATGACATATTTTAGACCACAAGATTAAAGGGCATTTTGGTACATTTTATATATCTTTAGTTTAAGACAACAAGATTCAAAAGTTTTCTTTTTTCTTAAACTCCGTGTCAAGCCAAAACCAGATAAGTAGATTGAAACGAGGGAGTGTTAAACTTCATTCCAAATGAACTTCCGAGGAAATGTTTTTGTATCTACTAGTTACTCTTGTTTTCAGTATCTTTGATGAAGATTTTCTTGTTTTAACTCTTTGATAATCGTCAATCTCTCCTATTCACACTTTCCTTTCTCAAAAATTGTTTTTTATCTCTCTTTTTCTGTGGTTAAATAAATTGCTTTTGATGCTTCATATAATTAGTCAAGTTTGGGAGACAATGTATTAAGCAGAAATATGAAGTTGGCACAATTGTCCCCTCATTATTCTTTTATTCTTCCTCCTAATAAAGAATATAATAATTTTACAAATCAATCCACTTGGAGAACTTTTGCATTTGGAATTGATTTCTTTTTCTTTTCCTATATTTGTTGTAACTCTAGAAGTGACGGTATAAAATGTTATGGAGAAAGAATAGGTTGACATCTAAGTATAAGAACCATGCATTCTCTTGGGTGGTTGTATCTATTTAAGCAATAGCATAGTTTAGTCTGTCAGCTGAATTATTGACTAACAGTTTACTATTGCATTGTTTCGAAATAAACTGAGGAGGATGCTTTGTACTCCTTCCTCAATCTTTATAAGCTTAACAATCATCACAGTAGGATGCCGTCAATTATTTCTGGATTTCCACCAGGCAAAGTATTGCCTCGGCTACTAAGATGTTTCTGTCCATCTTCTTATTTTTATGTTCACATAGAATGCTGTCTATCGTAATTTATATTGTCTGGATTTGTAATGCATGATTATTTTCCAATTATGCGCCATTAATGCCTTGCTGTGCTTTCCTATGGAGCTACTTTTCCTTGTTTTCTTTCTTTTAGTTATCCTTGCATCTCTGATGGCTTGCAATGTATATTTTGCCTTCAATTTCAGACTGACTACAACAAGCAAGAAACTATAGGAACTCTTGATTGCGGGCACGAATATCATGCAGAATGCGTAAAGAAGTGGTTGGTTGTGAAGAACACTTGCCCTATCTGCAAATCCACCGGATTGTCAATAGAAAGAAAAGATTTGTGAAAACAGGGAGTTGGTTGGTTGGTGGATGAATAATTATAAGAGTGGGACATTTTGTTCTCTTGTTAAATATTTGTTCTCT</genome_strand>
        <mrna_strand>TTGAAAGAAATACTAGACATCAGAACCTTCCTAACATGAGAGTTCTGCCAGAAGAC.................................................................................................................................GGAGTGGCAATGCTGGATGTTTCGGGCTACCATGAAGTTAACAATCCCATTGATCAGCACAGAGATATGCGTTTAGACGTAGATCACATGTCCTACGAG.................................................................................................................................................................................GAGCTTCTTGCACTGGGGGAGCAGATTGGCAATGTAACAACTGGATTGTCAGATGAAATAATCGTTAACCGCTTGAAAACAAGATCATTTTCGCCCCCCGTTATTCCTTGCACCCTGGAAACTGCTGCATGTTTGGATCACGAAGCTGATTTCTGTGTCATATGCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGACTACAACAAGCAAGAAACTATAGGAACTCTTGATTGCGGGCACGAATATCATGCAGAATGCGTAAAGAAGTGGTTGGTTGTGAAGAACACTTGCCCTATCTGCAAATCCACCGGATTGTCAATAGAAAGAAAAGATTTGTGAAAACAGGGAGTTGGTTGGTTGGTGGATGAATAATTATAAGAGTGGGACATTTTGNTCTCTTGTTAAATATTTGTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0021L02-xwr9p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320805" ref_strand="+" ref_description="SGN-U320805        Tomato 200607 #1 [10 ESTs aligned] arabidopsis/peptide: AT5G60860.1 | Symbol: None | Ras-related GTP-binding protein, putative, similar to GTP-binding protein GI:303742 from (Pisum sativum) | chr5:24501855-24502931 FORWARD | Aliases: MAE1.9, MAE1_9 (evalue: 2e-107, score=385) genbank/nr: gi|3024504|sp|Q40521|RB11B_TOBAC Ras-related protein Rab11B >gi|623578|gb|AAA74113.1| putative (evalue: 1e-115, score=419)">
      <seq>atttgttttccttcttagaactctcagctatctccttaagtaaaccaaaatagttgattttgttgaattaatcgcagatggcaggtgggtatagagctgaggatgattacgattatctgttcaagttggtgttaattggagattctggtgtaggaaaatccaatctcctttctcgattctcaagaaacgagttcaatcttgaatcaaagtctactattggtgttgaatttgctacccgtagcattaaggtagatgataagatcgttaaggctcagatttgggatactgctggacaagaaaggtatcgtgcaattacaagtgcatactacagaggggctgtcggtgcattagttgtctacgatatcactcgacatgtcacatttgaaaatgttgagagatggttaaaagaacttcgagaccataccgaccaaaatatagtcataatgctcgttgggaacaaggccgacttacgtcacttgcgtgctgtttcaacagaggatgccaaggcctttgctgaaagagagagtaccttctatatggagacttcagcacttgaatccttgaacgttgagaatgcgtttacagaagtactgacagagatatacagggtggtctgtcggaaagcactcgaagttggggatgatcctactgcgttgccgaaggggcaaactataaatgttggcaaggatgatgtttcagctgtgaaaaaagttggttgctgctctgtgtaagctaaaaaaatcaagaaatcggtgaagttaaactttcaaatggcttctcctatagttgcattgagtattctcagttttgaatatcttaggaattattccacctctgtattgtttcattaacttacctttagtttgtactttgtaccctattttgctagtcttttgactctttgtaaaagagttttactattatttatatacttttacattatattattattttgtatgtttatggcatcttatgagtttaaataaaaaaaaaaaaaaaaaactcgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-xwr9p/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="42422" stop="38799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42122" g_stop="41822" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41821" i_stop="39791" i_length="2031">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39790" g_stop="39100" g_length="691"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="992" r_length="691" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="993" polyA_stop="1003"/>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-U320805" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>992</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42122" e_stop="41822"/>
          <exon e_start="39790" e_stop="39100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTTTTCCTTCTTAGAACTCTCAGCTATCTCCTTAAGTAAACCAAAATAGTTGATTTTGTTGAATTAATCGCAGATGGCAGGTGGGTATAGAGCTGAGGATGATTACGATTATCTGTTCAAGTTGGTGTTAATTGGAGATTCTGGTGTAGGAAAATCCAATCTCCTTTCTCGATTCTCAAGAAACGAGTTCAATCTTGAATCAAAGTCTACTATTGGTGTTGAATTTGCTACCCGTAGCATTAAGGTAGATGATAAGATCGTTAAGGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTGTTTTTTTTCTCTTTGCTTGTATATTTTCAGCTAATTGGATTGAATCTTGTTTGATCTGGCAATTTCATACTCTTGAAACTTGTGTGTAAGTTGCTAATTTAACTTTCTGAAGTGGGGTTTGTTTCAATTTTAGCTAGAATCTGATAATTAATAAGTTAATAATCTTGCCCCCCAAAAAAAAGTTTTGATTTTTTCGAGTTTCTTTTGGCAAGATTTGAAAAGGATTGGTAGTTTCGTAGCTAAGGGGTGAAGTTCCCTAATTCAGTTACAGATATGTAAAAGCTAGAAGGTGTTGTGTTAGTATGTTATGCTGCCATCTAGATGTTTTGTCTGTGTGGTACTTTGTTTTTGTGAGTTGAGGGTATATCGGAAATAGATTCTCTACCTCAAAGTAGTGGTAAGGTGTGTGTACATTTTATCCGTTCATACCCGTGGGTGGTGGTTGTGGTATTTTGTTTGTGTGTTTATATATCTATCTCTAACGTGTCTCTCTACCCTCACAAAGGTAGGGTTAAGGTTTGCTAACATCATACACTCCCCGGACTCCATACGTGGGATTAGATTTGGTATGTTTTTGTTTTTCTATATATAAGGAGGATGTGAAGGAAATGATTGTTCTGTCTTGCTTGGTATTTTTAGAGATGCTTTCGGTTGTTCACTAGCAATTACAACACTTAGCAGTGATGGATTTTTCCTATGGGTCAATGCCTCCCATTACTGTCTTTTAGGCAACGAGCAAGTGTAGTTATGGATCAAGTTGTAACTGGTAGACCTCAATTTACTTCTAACTTCTTCTAAAAGGTGATCCCTTCTTGTTTTCTTCAAAATTTGTAAATTAGAGGTGAAAACAAATGACATCTGCACAATAAACATCCATAGTTGTGATGGTTCATTGCTCCGGCCAAGAATACGATTGATCTGGCATGGACTACATGTGCCCCTGCTCCCTAGTAGTTAACTGGATAAATTGAGTTGCCGGGCGTTCCTAGTCATTCATAAATCTTTGAGGTTTAAGGCTTCAAATATGGATATCATATAATTAAAGAAAAGGAAAGAAATAGTACCAGAGCGGATAACTAAGGAGTGGAGCAAATGTGGTCCCTAGGGCTTCGGCTAGTGGTAAGAGGGCAGTGCATTGTGTGTGGGTTAGGGGTAGGTCAAAGGTTCAAAGCCTACTGCCGTCAAAAGTGTAGTGCACTGTATTCAATTGGAAAAGGGTAGAGAGGTGGGTCCATTATCCACCGAATTTCAAACGGTGCGCCACTAGCCTCGTGGATTCCTTTTTTAGAATAAAAAGGAACAAAATTTGGCATGTTGGTATTGTTATATTTATATCAAGCTAGCTAGAAAAGTTGGACTTCTACATGTATGATAGTACTAGTATATTAATTATCTCCTAGCTAACATAATCTCATTCAAGTACTAATTAGCCTTTTTAGAAACTTTCTTTTCAGGTGAGACTAGAGTCTAGAGGGCTTTTTTAGAGAATAGGTACTACTTTCCATTACTTATCAAAAAGAAAAAGGAAAATGTCGTGCACTTAATTAATCACGATATTTGACTGTTATCTACTTCATCAGCTTAGGTGCACTTAATTAATCACGATTTTAAGTGGTGGTTCTGTTTCAAATTTTGGACTAGACGCTAGAGTATAGATGCGTATACATGGATGAAAGATGAGCTTCACTCATGTACTCGAAGTAGTTGACTGACTGCCATCCTAAGAGGGGGGGGGGGGGGGTTATCCTTGTATTTCTTCTATTGTGGTTCTCGTAGGTTAGTCTTATATTTCTTGCTTCCCTTCTTTGCCCTTTTTTTGCTTAACCTGCGACTTTATTCTGCCAGCTAACCTGATTCCTGATAAGTTCATTTTCGGGTTTGATTTTTGATTTCTAGTATGGAACTTATGTTTGAGCTCTGTTAGATCTTTGGTTTGAAATCTTTTTGGTTCTACTTTGTCATGGTAAGATTGGCACCTTATTGAAGTGGAGACTAATTAAAACTTCAATTTCCCATGTCGGACAACAGGTATCGTGCAATTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTAGTTGTCTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAAAGAACTTCGAGACCATACCGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCCGACTTACGTCACTTGCGTGCTGTTTCAACAGAGGATGCCAAGGCCTTTGCTGAAAGAGAGAGTACCTTCTATATGGAGACTTCAGCACTTGAATCCTTGAACGTTGAGAATGCGTTTACAGAAGTACTGACAGAGATATACAGGGTGGTCTGTCGGAAAGCACTCGAAGTTGGGGATGATCCTACTGCGTTGCCGAAGGGGCAAACTATAAATGTTGGCAAGGATGATGTTTCAGCTGTGAAAAAAGTTGGTTGCTGCTCTGTGTAAGCTAAAAAAATCAAGAAATCGGTGAAGTTAAACTTTCAAATGGCTTCTCCTATAGTTGCATTGAGTATTCTCAGTTTTGAATATCTTAGGAATTATTCCACCTCTGTATTGTTTCATTAACTTACCTTTAGTTTGTACTTTGTACCCTATTTTGCTAGTCTTTTGACTCTTTGTAAAAGAGTTTTACTATTATTTATATACTTTTACATTATATTATTATTTTGTATGTTTATGGCATCTTATGAGTTTAAATAGAGAAAC</genome_strand>
        <mrna_strand>ATTTGTTTTCCTTCTTAGAACTCTCAGCTATCTCCTTAAGTAAACCAAAATAGTTGATTTTGTTGAATTAATCGCAGATGGCAGGTGGGTATAGAGCTGAGGATGATTACGATTATCTGTTCAAGTTGGTGTTAATTGGAGATTCTGGTGTAGGAAAATCCAATCTCCTTTCTCGATTCTCAAGAAACGAGTTCAATCTTGAATCAAAGTCTACTATTGGTGTTGAATTTGCTACCCGTAGCATTAAGGTAGATGATAAGATCGTTAAGGCTCAGATTTGGGATACTGCTGGACAAGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTGCAATTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTAGTTGTCTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAAAGAACTTCGAGACCATACCGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCCGACTTACGTCACTTGCGTGCTGTTTCAACAGAGGATGCCAAGGCCTTTGCTGAAAGAGAGAGTACCTTCTATATGGAGACTTCAGCACTTGAATCCTTGAACGTTGAGAATGCGTTTACAGAAGTACTGACAGAGATATACAGGGTGGTCTGTCGGAAAGCACTCGAAGTTGGGGATGATCCTACTGCGTTGCCGAAGGGGCAAACTATAAATGTTGGCAAGGATGATGTTTCAGCTGTGAAAAAAGTTGGTTGCTGCTCTGTGTAAGCTAAAAAAATCAAGAAATCGGTGAAGTTAAACTTTCAAATGGCTTCTCCTATAGTTGCATTGAGTATTCTCAGTTTTGAATATCTTAGGAATTATTCCACCTCTGTATTGTTTCATTAACTTACCTTTAGTTTGTACTTTGTACCCTATTTTGCTAGTCTTTTGACTCTTTGTAAAAGAGTTTTACTATTATTTATATACTTTTACATTATATTATTATTTTGTATGTTTATGGCATCTTATGAGTTTAAATAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0021L02-xwr9p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331325" ref_strand="+" ref_description="SGN-U331325        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:19844044-19847071 REVERSE | Aliases: None(evalue: 7e-32, score=105) genbank/nr: gi|8894546|emb|CAB95828.1| hypothetical protein [Cicer arietinum](evalue: 8e-50, score=157)">
      <seq>tgatgataatgtgccgggagaaacgcaaaatgacaattttcagccacaagacttttacatgaattcttctgaaagaagtgaccgtgaaggttcttctatggatcagagtggtgatgatccctatcattccatattctataatcgtgatgaaaatttagaggatgttctcaatatgcatcgggccctgcgtaatgacaactataagaatgcaataaagtatttacgacatgctctgcattccagtccaccagtactagaggcttttcatcctttaatacagatgctgctgctcggggatcaggtgaaggaggctcttgatgaggtggaaaaatttactccatacaccaacacatcatttcagttgagatctctgtcctgataacacttccaattgttatgttcaaaaggttgaaagctactatcttggagcattttgacagcggtaactatgtcaaactttcagcaatccatgaggaaaatttggagaaagatcctgcttgtagccactcattggggagactcatcatcttgcatagaaggggagagtatagcactgaaaagctgatggaaatgatagctttgcatttggatgctactcatgcaaattgtgacacatggaaggagttagcttgttgcttcctgaggctttttncatgtgaagaagattgcatgtctgtgtgctccaacggtgaagatagtgagaagcaaaaattcacaaaatggattagtcagattccaaaaatatttagcgattatgagtctagcaagtcatggaggctccgttgcagatggtggctgactcattacttcagccagactatactcacttcagatattgcttcaggtgactgggaactgctgactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-xwr9p/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="56921" stop="47096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56621" g_stop="56476" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56475" i_stop="55377" i_length="1099">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55376" g_stop="55243" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="280" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55242" i_stop="53875" i_length="1368">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53874" g_stop="53789" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="366" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53788" i_stop="53379" i_length="410">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.430" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53378" g_stop="53338" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="407" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53337" i_stop="52787" i_length="551">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52786" g_stop="52653" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="541" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52652" i_stop="50026" i_length="2627">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50025" g_stop="49723" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="844" r_length="303" r_score="0.993"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="49722" i_stop="47418" i_length="2305">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47417" g_stop="47396" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="845" r_stop="866" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-U331325" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U331325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56621" e_stop="56476"/>
          <exon e_start="55376" e_stop="55243"/>
          <exon e_start="53874" e_stop="53789"/>
          <exon e_start="53378" e_stop="53338"/>
          <exon e_start="52786" e_stop="52653"/>
          <exon e_start="50025" e_stop="49723"/>
          <exon e_start="47417" e_stop="47396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGATAATGTGCCGGGAGAAACGCAAAATGACAATTTTCAGCCACAAGACTTTTACATGAATTCTTCTGAAAGAAGTGACCGTGAAGGTTCTTCTATGGATCAGAGTGGTGATGATCCCTATCATTCCATATTCTATAATCGTGGTGAGTGTTGCTCATGGCTTAAAGATTTGTCTATGCGGCGGCATAGTCATACATGAAATTCAAAAGGGTAGCAAATTTTGCTTTTACTTGCAGAGAACCTTAGAGCCTGGTTCATGGCAATTGGATTTGGACTTGAGGTACAATATGTAGTATGGGCTGAAAAAACAAGTTGACTTTTCTTTTTCCCTTCTCTCTTATGAAGGGGTCAGACGAGACCCTTTATCTCTGTGTCTTAATTGAAGTTGGCACGATTGATGACTGATTATTGTTGATTTCAAGAATGAACATGTCTATCATTCGAATAATTACCTTTAGTTTGTACAGGTCATTCTGTAATGTGAATTTAGCCTCTAATTTTTCTTTGGGTTTAGGTATGTTACAAGTGTTGGCATAGGGTATACTTTAGCCAAAAAATAGTTACATATAATTACATAGGAATGTGGTTATAGGTACGTATTGTCTGGGTCTTCTTTAGACATTAAAATGAATGGCATCTTCCAAGAACTCTCCAGATGAGTGGGAGGAGGAGCAGCTGACTAATGACAACAGCAGCCAAGCTTCCCTCCCTCATTTTGGGTTGTTGCAAAATCATACCTGCAAGGAACATGGGAAAAAGTGTGGACTTTTAAAATTTTCAATACTTTGGATGGTGACAAAATGGGCCTGCCCTGGATTATATACTTCAGTTTCCTAAAGGGATGATGTGAAGATGAGGAAGTTAGTACTTTAGGAGAGAACATTCTCTTGGAATATTCTCAAAAGGATGAAAAGGCAGTTGACATGAGGTGTATAGAATCTGGAATTTCTAAGTCCTTCAACCCTTGTGAAGGTGGATATTGTGCATTCGACATGGTTTGGGTTTTTTTTAAGCTCCAATTGAGATACATTATGTTCTTTATTTTTGGATAACCACGGTGTCCATGGCCATCTTACGCATAACTCGACTAATTCCAAAAAATACTGTCACCACCCAGCTCCCAACAATAATATAATATATGTCATGTTCTTCTTGCTGATTAGATTTAATTATGATATTTCTTACTCTATTCAAATGTAGGTCTTCCATTGTGGTTATTGCCTTTACAATTGCCTTCCTCAGATGAAAATTTAGAGGATGTTCTCAATATGCATCGGGCCCTGCGTAATGACAACTATAAGAATGCAATAAAGTATTTACGACATGCTCTGCATTCCAGTCCACCAGTACTAGAGGCTTTTCATCCTTTAATACAGGTAATTGCTTATGTCCAAGAAAGAATTCAGACAGAATTTTTCAAATTTATTCAGAACTGTATTTTATAGATGTCGTAGGAAGTTCATGCATGTTCACATTATCCCCAACTCTCGGAAGAGGACTCCGTAACCTCATATTGGTTGGTTATATGTATCTGTTTGTGTATCTCTATTTTCTGCATGCTGATCATTGTGTTAGCTTCATCAGCTAAAACCAATAGAGGAGAACTCCTTTTTTATTTGAAACCTAGCCCTGGGGCTCATAATGATTCAAGTTGTTGAACACAGCTTGAACTTGAAATTAAGCTGGTATATTAAACGCACCACCTCAAATTAGTTTCATCTCAAGTTGTTTGTGTTCAATAATGTTAAAAATTCTAATATTTATGAATGTTTTGTAAATATATACTTCAAGAATATATTTGCAAATATTCCATCTTATTTATTCGAGTTGGTATCTAGATACTCTATTTACATTGACAATTTGTATAGAAGGTTAAACTTCATCAGTTAGCACCGCCAGGCTCAAAATGTAAGTGGGTGCTTCAGTTGAATGGCGGGTGAAATGTTGACCAAATCCTCCGCGACACGAGTTCGATTCTCATTTTCTACAATTTTTTCTTATTCTGATGATGTTTTTCTTTTTTGAAACTGGGAATGTTGTTATTTTCTTATTCGTCTTGCTTTCCTTTTTACTCCTCTTTTCCATTTTTACTTTTCTATCCTTTTTCCAGACAATACAATCTCTTCCAGAAAGAAGAACACTATCTCTTTTTACTTCCCCTCCTGAAAAAACTTAATCTTCCTCCAAAACAGAAAGAATTTTTTTTTTCTCACTTATAAAAGCTCTTTCGTTGATGTTCATTTTCTTATTTTTTTGTGTTTCCTTTTACTCTCTCCAGACACCCTTATAAAAAACTTAATCTTCCTCCAGACACCCTTGCGCTTTTCTTTTTCTCTTATGACTTTTCAGATTAACATCTTATTTAACTTTTTTTTGTTTATTAATTTTGTAATTGAATCAAAATATTCAATCTAAGGCTAATCTCACACTGAATTTTTGTGGGAATAAATTAGTGTAAGCAGTGGATGCTATTATTCATTGTTTGAATAATATGAAAAATGTCTAGAACAATTTTAAATAGAATGATAATTTTAAATGATTTACATGTTAAAATTTTTTACCTACATTATTCAAATAGTTGTGCACTTATATTTGATGGTTGTAGCAACTGTATGTTAATTGTAATGGAGCATCCATTACTTCAAAAGTATAGGTCCACTGATGATTCTATCAGGTGTTGAGTGATATATTAAATTAATATATAATATGCTTTTCATGTACTTAAAAGTCTAACATCTTAACAGATGCTGCTGCTCGGGGATCAGGTGAAGGAGGCTCTTGATGAGGTGGAAAAATTTACTCCATACACCAACACATCATTTCAGTTGAGGTAGCTGTTTCTCTCTTATGAAAAAAGTTGAATATAAATCTAAAAGATAACAATGATGATGAGTTTTGAACTTCTCAGACAAAACAGTGCTGGTTACTAGTATATCAAGATTTTTTATGTGAATGGAATGATTAAATATTGAAGTGACAGACCGCTTAGATGTTGCCACTTAAACTTTTCTTCACTATTTACTAGAGATCTTTTATGGAATGATAAACTTTTATTATCTCTGAACTAATGCTAATATCTATATCTATCAAGTGAAGCTCCACTTCTTAAATCAAGATGAGTTTGACTCGATATTTACATGATAAAGATATCATTCATGCTAACTTTATCTGAATCAATATCAAGCCAAGCCCCAATTCTTTAAAGAATTTAACTGAAATTCGGGTATTGATTTGTGACAGATCTCTGTCCTGATAACACTTCCAATTGTTATGTTCAAAAGGTTAGTATGCCTTATGTTTAGTTCTTTTTTATCTAAGTTTCCCGGACTTAGGTGTGGGTGTCTGATACGGGTGTGTGTGGATCTAGAGGTCAGATCTTTTCATGATCTAAATTTGAAGACTCGAGGGTACGGATCCAGGTAAGTATACGGGTATGAGGATTCTGTTAAGAATAATTCAAATATCTAAAATTAGAGTTATAATCTAAATTATGTGACATTATGTGGAAAACTTACAAGGTATTCCGAGGAGTATCTAAAAAAGGAGATAAAAAGGAAAGGACTGACATAGAAATTTCTATATACAAGCTATTCCATTTTCTTCAATTCCACCTTAGTTTTTGTTTTGATTTCATAAATCATAGGTAGATATCCAATTTTACAAGAGATTGTTCAGTAACATATGACAATTTTCTGTAGTGAGCTTCTTGACGTGTCATTAGTTGAGTGTTTGACTGCTTCCTGTACAACCGATCATTATTTATTTTTCTCCGGTCTTAGTCACTACGTCTAATTTCTTCTGGTTTGTTTGTTCTTTATCATGTGGCATGCAGGTTGAAAGCTACTATCTTGGAGCATTTTGACAGCGGTAACTATGTCAAACTTTCAGCAATCCATGAGGAAAATTTGGAGAAAGATCCTGCTTGTAGCCACTCATTGGGGAGACTCATCATCTTGCATAGAAGGGGTACATCCTAACCTGAATAATCATTTTATTCACTTCATCTTGAAGAGATAGGAGATACAAAATCTTAGTACTTCCACAAAGTTAGCGTCACTCCGAAGTATTGTCTTAAGGACATGCAATAAATGATGTTCAATAAAATTGGCTTAAACAAAACTTATCTATTTTTTCAAGAAATGAATCTTGTCTAATTCAACTCTAAAAGCTAGCTCTTGACTCATGACATGGCCAACCCATTATCTCAACCAATAGGGACCACTTTAACATAATCTCACACATCCAAGCTTGGACATTTGGAGTGTTATGTGGGCTCAACATTGGATAAACCACGAATAAGGATAAATTTGATCTTGGTATTGAACCTTGGATGTAAATCTACCCCAAAAGCTAAATCATGATATGTGAACTGTCCAAGACCGTATAAGGAGACAACAACCCGTTCCTCCCTAACAAATGTGTATGCTTAACCTTTTAAAATTTAAAAATACTACTACATACCCGGTGAAATCCCACCAAGTGGAGTTTGGAGATAGTAGAGTGTATGCATCCCTTACCACTACCTCATGGAGATAGAGAGGTAGTTTCTGAAAGACCCTCGGCTCAAGTGTATCAAATTCAAGTAGAGGGAGAAAAATACAATGAAGAAAGCATAGTCATTAATAAGAAAATCAGTGCCAAGTATACAAGAAAGAAATAGTACCAAACATCAAAGTTGTGTGATATTGAAAACATAATAAACCATATATTGCAAGCACTACAACAGTACGACTAGTACTATGACTTCTATCCCTCTACCCTAATACACGACCTCCACTTCTTCCTATCTAGAGACATGTACTCGGTAATATGAAGTTGTGTCATGTCATGTCTAATCACCTTTCCCCAGTACTTCTTCGGCCTACATCTACCCTATGTGTGCCTTCTACAACCAGCCTCTCGCACCTTCTCACTGGGGCATCAACACACCTTCTCTGCACATGCTCAAACCATCTCAATCTTGCTTCTCTCATGTTGTCCGCCACTCCCAGGTTCTCCTGGATAACTTCATTCCTAATATTATCCCTCCTAGTATGCCTGCACATCCATCTCAACATCCACATCTTGGCAACATGCATCTTCTGCACATGTGAGTTCCTGCCTGGGATTTCCATTTAGATACCTCAATTAATGACATGACCTCTGTGAAACACCTGATGTCTATGAAAACTATGCCTATTAAGCACGATGCCTTGACATGGCACAATGTGTATTTCACATTCTTTTTCAGCCAATTAAATGACTTCAAATGGCTAATTTCTTTCCTTTTTTTGTTGCTCTTCTAGTTTTTCCTCTCTTTCTCAGGACTTTCTCTTGTATTCTTTTTGGATCATTGGTCTTTCTTTTCCCTTTCTGGAGGGCTCAAAAAGTTTACTTTTTCTTTTGATTATTTGTTATCAGAATCGAAGTGTCTTTGTTTTATTGCTGTATTTTCCATGTCATTCGCGTGTGGACTACTCATGTTTTATTTTCTTATTGTGTCCCTATAAAGTGTTGAATAGGCACAGTTTTCGCAAACTTTAGGTGTTTGATACGTGTTCTTAGTTTGACATGTCTAAATAAAAGTTGAAGTGGCCACATGTATTCAGCCAAAGTTTTATGTTCAAATCCAATAATTTTGCTCCTTCCATTTTGGACAATTTGTGGCAACTGTTTGGGCAGACCCCAATGCCAGAAGGCTCCTGCTTAGACGGGCTGGGGGGTGGCAAATGTAGCAGCCTTGCCTCCTCATTGGAGAAGTTGGTCCAAGATTCGTACCCTGGTCAACCATATAAACAGGAGCTATTGCTACAAGGTTGCCTCCTCTTAAAACAAAGCAAATCAGGAAATTTGAAGTTTAGGCAATGTGCTCATCTTATTGATGTACCCCCTGGAGAACTGAACAATCTGCACTGGAATTACAAAAAAAATAAAAAATATGTATATACCAGCGAGTTCCAGATCTCAAAATAGAAGTAAACTAGCTTAGCTTATTTACAGAAAACTCTTAAGACCTATGCTTGCAAGATACCCCTAGTTTTAGATTTGTTGATTTTTGAAGATGCAACAACATACCCAGCATAGTCCCACAGGTGGAGTCTGGGGAGGGTGAGGTGTACGCAAAGTCGCAAACCTTACCCCTATCCTTGAGAGACTAGTGAGGTTGTTTCCGATAGACCCCCGGCTTGAGAACAGGTTTGAAAGCTGAGCAAGTGTAGAAAAGCAATGATGAAAATAACGAAGAAAGACAAGTACTGACAATAAAATAGTGTAGATAGCCAAAATAAATGAAACAACAAATAGCAAGAAAAATCAAAGGATAAGGTAATGCCAACAGAAAAATAATAATATACTAGTAAGAAAACAGACTAGAACCCCCAAATGGTACCTTATTTTTGCAATTAATGCGTTAATCATTGTATATTGAGTTTCTTTTTTCTGCGTTTTTCTTGGCCTTGGTTTATATAAACAATCAGGAGATTATAGCACTGAAAAGAAAGTCTCATTTTGTGGTACTGTCCCAAATGATACCTTATTTTTGCAATTGATGCATTATGCATTATATATTGATTTTTTTTCTGTTTTTCCTCGGGCTTGGTTTATATCATCATCAGGAGAGTATAGCACTGAAAAGCTGATGGAAATGATAGCTTTGCATTTGGATGCTACTCATGCAAATTGTGACACATGGAAGGAGTTAGCTTGTTGCTTCCTGAGGCTTTTTCAATGTGAAGAAGATTGCATGTCTGTGTGCTCCAACGGTGAAGATAGTGAGAAGCAAAAATTCACAAAATGGATTAGTCAGATTCCAAAAATATTTAGCGATTATGAGTCTAGCAAGTCATGGAGGCTCCGTTGCAGATGGTGGCTGACTCATTACTTCAGCCAGACTATACTCACTTCAGATATTGCTTCAGGTAAAACTTCATTTCTTTCTTTTTAACATGCAACTAAATTCACTTGTTTACCATGGCAAAGGTCCAAATACTAAAGACTAAAGCTTTGTGGGCTTGTTCTTGGTTTGAGGTGATTAAGGTTGTATATTAGCTGTTTGGTTTGACCCTCCCACCACATCTTTCCCCATAACGTTTGATGTGTAGCAGTTTTTTTGTGTTTGTTTATGCTCAACTTTCTAGCAGCTAATAATCTGTTAACAAATTCTGAAGAACCTGATCCACCTTGAATTATATTTGCCTGAAAAACAGTTGTGTGGAAAACTGCATGGATCCTAACAAAGAACTGTTTCCTGATCCAGCTTCTAAGTTTTCTAGTTTCTTAATGCTAATATATATGATGCAAAAGTCAAGAATTGGCTTTAATAGTTAGTACTAGTATATATGTACAAGAGTTAAAATTCAAATTGTTAAAAAATTCACGTGGTTCCAAGACATAATACTGCATTGTTAATAGTGTCAGGTCTTAGACAAATTAGAAACCGACTTTGATAAATTTAGGTTCTTGTTTTCTCCATTTTCATGCATATCTATTGCTGGATGTCTTTGGCTAGATGCCAGCATTTAAGGCCCCAAATACGGGTGTGGCCATTTTGAGGGGGCAGTGTTTTGGGAAGCGAGAAGCGGAAAAAAGCGATGAGGGCTTGCTTCACAGAAGCGAGAAGCGTGAAGCGAAGCGCGCACATTTTTAAAAAAAAGCGACATTTAGTATAAAAATAAAAAAATATTAAATTACTAAAAAGAGGTAATATAGTCTTAGATTGAAAGAAATTACTTAGAAAAAATACTCACAAGTCATAACATATAAAGCAAAAAATCAAAAACATAATTAAATCACAAAATACTACAAACAAAAGGAAGTTTCAGAAAATAATAAAAAAAGGCTGCTAGCATACACACTGATCACCAAAAAAAAAAAAAGAATTGAAAAAAAAACAGAGGCAGCAGTCAGTTAAGAACTAAGAAGAAAAGAGCAGGCAGCAGAGAATAGAGATGAAGAAAAGAAGAGAAGAAGAAGAAAAAAGAGATGAACAAATTACCTGCAGGCCTCAGTCGAGATCTTGAGGAGAGAAAGAAAGGAGGCAGCCAGCAGCCTCAGTCGAGATCTTCACGAGAAAAAGAAGGGCGGCAGCCAGCAGCCTCAGTTGAGAGCTTCAGGAGAGAGAAGGGAAAGAAAGTCGCGAGGAGAGAAGGGAAAAAGAGTCACGAGGAGAAAAGGGAAAGAAGAGTTGTGAGGAGAGAGAAGTTATATTTCAGATTTTTTAAAAAAAAAACCTATTTTTTTTAAAAAAACCCTAATTGTCGCTTTTTTTTTTATTATAAAAAGCGCGCTTTTTTGCGCTTTTTCCTCAGCGTCGCTTCTCGCTTCTTCCTCTGAAGCGAGTGCTTTTTTCAAATCGCCTCGCTTCAAGTTAAAAAAGCGCACAAGGGTCGCCTTGCTTTGAAGCGCGCTTTTCTGCGCTTTTAACAAAACTGTGAGGGGGTGAAGAAACATCCTTGTTCTCTGAGTCATTACACTTGTAGAAGTTCAGTTTTCTCTGGCATACCATGTGATCGGGAGGTCACGGGTTATCTTGCAGAAATGTAGTGTAAGACTGAGTACAATAGACCCTTGTGATCCATCCCTTCCCTGACCCCTCATAGCAGGAGCTTAGTGCACCGGTCTGCTTTCTTTAGGTTCAGTTTCCACCTGTGATGACCAAACTCTCTCTTGTATATATTAGAAATGCCACATGCAGCAGGGATATCTCCAACTTCATCCAGGATAACATTTCGTTTCCTCTGCCTATTGTAATTAATTTTGAGTCTAGTTAAACTTACATGTTAGACAGAAGAAGACGGACTGCCAAAATATTACAATTTTTACACCAATCCTTTCAAAATGATAAATTTCAAAGCAACCTACTGAACAAACACTGTATTCTGGGGAAAAAAGAATCGAAGCTATCAAAACACCACAACAGACCCGTTTTTTTTAAAAAAAAATTGAATACAGGGTTGGGGAAATGGAAATGGGAAGGGGATTACAAAGCAGGGAATCAAACTCTCACCAATGTGGTGAAAGTTCGGGTAGTCAACCCACCAACTGAACTACTAATATTCCTCACCCAAACCTGTTTCAAGATTGAGGAAGAGAACACATTCAAATGTCAGGAACAACACCGAGAAAAGCTCATATTCTTGAGAATCCACTGATGCGTATTACTCAATATTTGTATTCCAGCAAAGGTTTTACATTTTAATACTTCGATTTGCCTGTTGATGGCAGGTGACTGGGAACTGCTGACTTA</genome_strand>
        <mrna_strand>TGATGATAATGTGCCGGGAGAAACGCAAAATGACAATTTTCAGCCACAAGACTTTTACATGAATTCTTCTGAAAGAAGTGACCGTGAAGGTTCTTCTATGGATCAGAGTGGTGATGATCCCTATCATTCCATATTCTATAATCGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAAATTTAGAGGATGTTCTCAATATGCATCGGGCCCTGCGTAATGACAACTATAAGAATGCAATAAAGTATTTACGACATGCTCTGCATTCCAGTCCACCAGTACTAGAGGCTTTTCATCCTTTAATACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTGCTGCTCGGGGATCAGGTGAAGGAGGCTCTTGATGAGGTGGAAAAATTTACTCCATACACCAACACATCATTTCAGTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCTGTCCTGATAACACTTCCAATTGTTATGTTCAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAAGCTACTATCTTGGAGCATTTTGACAGCGGTAACTATGTCAAACTTTCAGCAATCCATGAGGAAAATTTGGAGAAAGATCCTGCTTGTAGCCACTCATTGGGGAGACTCATCATCTTGCATAGAAGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGTATAGCACTGAAAAGCTGATGGAAATGATAGCTTTGCATTTGGATGCTACTCATGCAAATTGTGACACATGGAAGGAGTTAGCTTGTTGCTTCCTGAGGCTTTTTNCATGTGAAGAAGATTGCATGTCTGTGTGCTCCAACGGTGAAGATAGTGAGAAGCAAAAATTCACAAAATGGATTAGTCAGATTCCAAAAATATTTAGCGATTATGAGTCTAGCAAGTCATGGAGGCTCCGTTGCAGATGGTGGCTGACTCATTACTTCAGCCAGACTATACTCACTTCAGATATTGCTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTGGGAACTGCTGACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0021L02-xwr9p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317896" ref_strand="+" ref_description="SGN-U317896        Tomato 200607 #1 [14 ESTs aligned] arabidopsis/peptide: | Symbol: None | homogentisate 1,2-dioxygenase / homogentisicase/homogentisate oxygenase / homogentisic acid oxidase (HGO), identical to SP:Q9ZRA2 Homogentisate 1,2-dioxygenase (EC 1.13.11.5) (Homogentisicase) (Homogentisate oxygenase) (Homogentisic acid oxidase) {Arabidopsis thaliana}; contains Pfam profile PF04209: homogentisate 1,2-dioxygenase | chr5:21963095-21966139 FORWARD | Aliases: None(evalue: 0, score=787) genbank/nr: gi|8131905|gb|AAF73132.1| homogentisate 1,2-dioxygenase [Lycopersicon esculentum](evalue: 0, score=968)">
      <seq>aacaaataaggacatgtgaaagttcctcaaacaaacacgcctctgtcaaggatcatcctgccacgacagcactgtttcggtttcttcttctcaactctttcttttttagacataaaaatgttcataaaatagcagaggtgtcaaagaaatggagtgcagcagcagaacttccaattttccttctgatttggagtaccaaacaggatttgggaatcatttttcatctgaagctatagttggagctctacctcaaggtcaaaatagtcctcttatttgcccctttggactttatgctgagcagatctctggcacctcttttacttcccctcgcaaacttaatcaacgcagttggctatatcgtattaagccatcggttacacatgaaccgtttagaccaagaatgccgagacatgaaaagcttgtgagtgaattcaaccagtcaaacagttctgctacaccaactcaactaaggtggaagcctgttgagataccagaaacaccgactgatttcattgatggtttgtatactatatgcggggctggcagctcatatctccgacatggttttgcaattcacatgtatactgccaacaaatcaatggagaactctgccttctgcaatgctgatggcgactttctgattgttcctcaaaaaggaaggctgtggattactactgaatgcggaagattgcaggtttgtcctggtgaaattgtgattttgcctcaaggatataggtttgctgttgaccttccggatggaccttcacgtggttatgtcgctgaaacttttggaactcatcttcaacttcctgatctggggccaataggcgcaaatggtctagctgctccaagggattttcttgttcctgttgcctggtacggagatggctcccgtccaggttacactattgtgcagaagtatggtggtgaactcttcactgcgaagcaggacttctctccttttaatgtggtcgcttggcatggcaattatgttccttataagtatgatttaagcaagttctgcccttacaatactgtattgatggaccacagtgatccttcaattaacacagttttgacagcaccaacagataaacctggtgtggcgttgcttgactttgtcattttccctccccggtggttggttgctgaacacaccttccgtcctccatattatcatcgcaattgtatgagcgaatttatgggtctaatctatggcggatacgaggcaaaagctgatggttttcaccctggcggggcaagccttcacagctgcatgactcctcatggtcctgataccaaaacatttgaggcaaccattgcacttggaaatgaagctggtccacatagaatagctgataccatggctttcatgtttgagtcttgcctagtaccccgagtctgtccgtgggctcttgaatctccgtttatggatcacgattattaccaatgctggattggcttgaagtctcacttctcaggactatctatgaacgaagacaacgtcgatttgcagaaaggaaaacccatagaaaggtgaaatgctcattgttcagctagctcctgtagttcctcctaaagtgacttaaacttgtacataaggagtcacaggcatgtaaaacataaaataaaccctatgttagtatcagattgaaagtttagggtggcgatccaagcgcggatgtagtggtaagatgaaaccaatgttctatgaaattgcgacgcaagtaaaaatgtgttaccgtgatgatgttgcatgtagacttgtagtttatggtgcattttgtatatatataaagatggaactatcatggaaatacttgttgcaattacaagagcaatgaattaagtaatgatttatggcaatgtttgatattaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-xwr9p/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="63352" stop="69123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63652" g_stop="63999" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64000" i_stop="65798" i_length="1799">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65799" g_stop="66029" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="579" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66030" i_stop="66358" i_length="329">
            <donor d_prob="0.772" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66359" g_stop="66438" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="659" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66439" i_stop="66534" i_length="96">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66535" g_stop="66702" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="827" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66703" i_stop="66784" i_length="82">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66785" g_stop="66960" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="828" r_stop="1003" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66961" i_stop="67098" i_length="138">
            <donor d_prob="0.334" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67099" g_stop="67168" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1004" r_stop="1073" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67169" i_stop="67287" i_length="119">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67288" g_stop="67442" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1074" r_stop="1228" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="67443" i_stop="67526" i_length="84">
            <donor d_prob="0.331" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="67527" g_stop="67610" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1229" r_stop="1312" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="67611" i_stop="68256" i_length="646">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="68257" g_stop="68819" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="1313" r_stop="1875" r_length="563" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-U317896" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1875</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63652" e_stop="63999"/>
          <exon e_start="65799" e_stop="66029"/>
          <exon e_start="66359" e_stop="66438"/>
          <exon e_start="66535" e_stop="66702"/>
          <exon e_start="66785" e_stop="66960"/>
          <exon e_start="67099" e_stop="67168"/>
          <exon e_start="67288" e_stop="67442"/>
          <exon e_start="67527" e_stop="67610"/>
          <exon e_start="68257" e_stop="68819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAATAAGGACATGTGAAAGTTCCTCAAACAAACACGCCTCTGTCAAGGATCATCCTGCCACGACAGCACTGTTTCGGTTTCTTCTTCTCAACTCTTTCTTTTTTAGACATAAAAATGTTCATAAAATAGCAGAGGTGTCAAAGAAATGGAGTGCAGCAGCAGAACTTCCAATTTTCCTTCTGATTTGGAGTACCAAACAGGATTTGGGAATCATTTTTCATCTGAAGCTATAGTTGGAGCTCTACCTCAAGGTCAAAATAGTCCTCTTATTTGCCCCTTTGGACTTTATGCTGAGCAGATCTCTGGCACCTCTTTTACTTCCCCTCGCAAACTTAATCAACGCAGGTAACATACCTTCGTTTGCTTAATTACTAAGCCTGTTGGAGAATCCGCCTAATCACCTCCCTTTGTTATCTCGTCCTAATTCTGCATATAGTTCAAAGTTATTGCAGCTTAATTAGTTAGGCGTTTGGATAATGGAAAACACGACAAATCTGAACTATCGTAAATGGTATGTTGTACCTCCTGCATTAGTGTCTGTAATTGTCCACCCTTCGGTCTAACGGTTGACTAAATAAGAAGACGTGTCATAAAATGAAAAAGAGTCTAAAATACCTTAAAGTATTGAAAATGGTACAAAATTATTCATTCATCCGTCTTTCATCCAACTATTGACATCAAAATTGACCATTTTTTTAATTGTTTTAAAATTAAACTCTTTATATATTTTTTAAAATACTTGGCATTCAACTATTGGTCATAATATAATTTATTAATATAATTTATAAACTAACTAACTATCCACTTATTACTAATTAAATTTCACCCAATTAATAATTCAATTATAATATCAAAATCGTCATAAACACTACTAAAACACGATGAAATTATAGATTCCTGAAAATGACATCCAAAATTATTCGAGTCCGAATCAAGCCCCAATTAAATTTAGGTTGAGTAGCTTATTTAGGAGGACACTATCTTTTAAAATTGAACTAGAAATTTATGATTAAAGGTAAAGAAGTAATACATCCCGAATTGATTCATGCACTTTTTTTAAATATAATTTTATAAAAATTTATGATTTGTTTTAAAATCTTAGTATATTATTTTAAAAAAAGTTAACTATGAACTAACATCACATAATTGAGACATAAGAATAATTAAGATAAACATAGTCAGACTTTTAAGTATATCGATAATTTTTATTTAGACACTTGAATGTATGATAATTTACTTCTGTAGATATTTTCGGTTTAAGTTTTTAAAAACACTCAATTGGCAGTAGCTAATTTGTTGTTGTATTAATAATGTGATAGGTTTATTAATTTAGAGGGGTTTAATTATTAATGGGTGGGTAGTGGATTGATTTATAAATTATACTAATAAGTTAAGTTATAATAAATAGTTGAGCACTACGTATTTAAAAAAAATATTTAAATAGTTTAAATATAAAACCGTTAAATAAGTGGTCAATTTTGAATCAAAAGGTGGATGACAAGGATATTTTGGACTCAATAGGTGAGTGTGAAGAATATTTTGGAGCCAATAGGTGGATGGATGACAAGGGTATTTTGGACTCAATAGGTGAGTGGGAAGAATATTTTGGAGCCAATAGGTGGATGGAGGGTAATTTTGTACCATTTCCAATACTTTGAGGGTATTTTAGGCCCTTTTCTGTTTAATAAATTGATTGGTATATACAATTATGACACGTGTATGTCGAGTATATATGCTAGTTTTTAGATGGTAGGATATCAATGTCCCAAAAGAATGACAGAGGATAGTACAATAGTTTGTGGAATATATTTGTCCTTTTTCCCTTTGATAATATAAGGTTTTTAGTTTAAAATGGGGTTTGGATATAAGAAAGTGTTTGGATTGGAGTGAAATTGTTAAGTTTTTTGATATTTTGTCAATATTTCAGATAATGAAACTGATTGCCTAACTTCAATGACTTTGGCCATTCACACTAATGAACAGTTATCACTCTTCCATATAAAAATGTGTTAGCTAATTAAAATGAGACCTTTTCTTTCTTTTGTTAATGGATTTTGAGGGTTTGAATAAATGACCATTTAGGATGGAGGTGTAATTGATGGATAGGTTGGTTATGTTACTGAAGGAATCTTTTGTTTGTGCAGTTGGCTATATCGTATTAAGCCATCGGTTACACATGAACCGTTTAGACCAAGAATGCCGAGACATGAAAAGCTTGTGAGTGAATTCAACCAGTCAAACAGTTCTGCTACACCAACTCAACTAAGGTGGAAGCCTGTTGAGATACCAGAAACACCGACTGATTTCATTGATGGTTTGTATACTATATGCGGGGCTGGCAGCTCATATCTCCGACATGGTTTTGCAATTCACATGTAATTGGTATTTCAAACTTGTTGTCACTATGTCCTTCTGATGGTGTTCGGGATATAGTTGTTTCTTTCTTGTTTATGCTTTGTTCATGTTAAAATATAATTGGTATTGAGATTTGTTATGCTTTGGATATAAACATTGGCTTCAAACTCTGTTGCTATTTGCTTTTAAACTGAGAGTATATCGTATCTCCTTGACATAATGGACTATAAATCTGCTAAATGAATTTCTATTGTGAATAGACAATGATGTGTATTGAATATATACTCAGCATAACACCTATTACAAAGTTCAGTAGATCAAGTAATAATGTGTCTTGTTGAAAATGCAGGTATACTGCCAACAAATCAATGGAGAACTCTGCCTTCTGCAATGCTGATGGCGACTTTCTGATTGTTCCTCAAAAAGGAAGTAAGTGTTGATCAGTCAGGTGTCATCTCTCTGTTTGTAGTCAGCGTCAAATATATGTGCTTCGGAATTCTTTCTTACTCTCTGTTCATGATGTAGGGCTGTGGATTACTACTGAATGCGGAAGATTGCAGGTTTGTCCTGGTGAAATTGTGATTTTGCCTCAAGGATATAGGTTTGCTGTTGACCTTCCGGATGGACCTTCACGTGGTTATGTCGCTGAAACTTTTGGAACTCATCTTCAACTTCCTGATCTGGGGCCAATAGGTGCTTTAGAAAGTGCAATCCTATTTGCTGTTTAAACAGCTGATGTTATTTACTGATGATATGGATTTGCACATGTATTTAGGCGCAAATGGTCTAGCTGCTCCAAGGGATTTTCTTGTTCCTGTTGCCTGGTACGGAGATGGCTCCCGTCCAGGTTACACTATTGTGCAGAAGTATGGTGGTGAACTCTTCACTGCGAAGCAGGACTTCTCTCCTTTTAATGTGGTCGCTTGGCATGGCAATTATGTTCCTTATAAGGCGGGTATTTCTCTATATTTCAATCTCTCATAATATGAGTGCCCTTGTGCACTTTTTATCACAATTTACTTTGCTACATGGAAACTTGATGCTGTTTGCCTCCTTAGTCCTGACGTAATATATTTCCTCAATTTGCAGTATGATTTAAGCAAGTTCTGCCCTTACAATACTGTATTGATGGACCACAGTGATCCTTCAATTAACACAGGTTGGTTAGGCTTAAATATCAGCAGTTCATCTATTAATTGTCATTGCTCTGTGTGAATTTTGTTCTTAAATTGTCGGTGTCGCTAGTTACAATTGCTCTAGTTTCTTAAATCAATGCAGTTTTGACAGCACCAACAGATAAACCTGGTGTGGCGTTGCTTGACTTTGTCATTTTCCCTCCCCGGTGGTTGGTTGCTGAACACACCTTCCGTCCTCCATATTATCATCGCAATTGTATGAGCGAATTTATGGGTCTAATCTATGGCGGATACGAGGTTGTTTATCTCACTCTTGCATGAAGTCAATGTCAATTCTGGGGTTATTTCATACAATTTTTAATGCGGTTAAGCTTGTTTTAGGCAAAAGCTGATGGTTTTCACCCTGGCGGGGCAAGCCTTCACAGCTGCATGACTCCTCATGGTCCTGATACCAAAACATTTGAGGTACAACTCCTGCTGTATTCCCCCCTTTTCTATGGCCATGCCCTTCCCGCATATGCGGCTTTATTTACAAGGAAATTTGTTCCTTTTAGTCCCTCCAATGTCAACAAAATTCTGATTTGGTCCTTGTAACAAACCCGAATTGCTCACTATGTTGATAAGAGAACTAAAACGTGATTACAATTTTAGAATTGTAATTGCAATACCCAAACTAGTGAATTACAATAGATATATGAAAATAACAAGTAACTAACGATAGAGATAAGAATGGAAGCTTAGACTCTAGAAGAAAAAGAGGATAGACAACCCATGAATCAGTGACCGCTACCCCTTTTAATGGACACCCACTACTCGGCCAGAACCCCAAATTAACCTTGTTTTCGGCCCAATAGCCCTTGCCAGCCCAGTAACTACTTGTGTTGACCTTGGTATTCATATTGGGTTGAACTTGGTACATAACAGTCCTTGTGTGATTTCCGATACACATTTAATCACAAGTAATATGTGCCCTTTTGATCCTTCCACTTCCGAATCATCACAAATTTAACGATGATCTTAAGTGCTGAACTATTTAATTGTTGATATATTATCTTAAATTTGTATTGTTACTCCACATTCGAGGGTAAAATTCTAAAAAATGTATTGACAGGCAACCATTGCACTTGGAAATGAAGCTGGTCCACATAGAATAGCTGATACCATGGCTTTCATGTTTGAGTCTTGCCTAGTACCCCGAGTCTGTCCGTGGGCTCTTGAATCTCCGTTTATGGATCACGATTATTACCAATGCTGGATTGGCTTGAAGTCTCACTTCTCAGGACTATCTATGAACGAAGACAACGTCGATTTGCAGAAAGGAAAACCCATAGAAAGGTGAAATGCTCATTGTTCAGCTAGCTCCTGTAGTTCCTCCTAAAGTGACTTAAACTTGTACATAAGGAGTCACAGGCATGTAAAACATGAAATAAACCCTATGTTAGTATCAGATTGAAAGTTTAGGGTGGCGATCCAAGCGCGGATATAGTGGTAAGATGAAACCAATGTTCTATGAAATTGCGACGCAAGTAAAAATGTGTTACCGTGATGATGTTGCATGTAGACTTGTAGTTTATGGTGCATTTTGTATATATATAAAGATGGAACTATCATATAAATACTTGTTGCAATTACAAGAGCAATGAATTAAGTAATGATTTATGGCAACGTTTGATA</genome_strand>
        <mrna_strand>AACAAATAAGGACATGTGAAAGTTCCTCAAACAAACACGCCTCTGTCAAGGATCATCCTGCCACGACAGCACTGTTTCGGTTTCTTCTTCTCAACTCTTTCTTTTTTAGACATAAAAATGTTCATAAAATAGCAGAGGTGTCAAAGAAATGGAGTGCAGCAGCAGAACTTCCAATTTTCCTTCTGATTTGGAGTACCAAACAGGATTTGGGAATCATTTTTCATCTGAAGCTATAGTTGGAGCTCTACCTCAAGGTCAAAATAGTCCTCTTATTTGCCCCTTTGGACTTTATGCTGAGCAGATCTCTGGCACCTCTTTTACTTCCCCTCGCAAACTTAATCAACGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCTATATCGTATTAAGCCATCGGTTACACATGAACCGTTTAGACCAAGAATGCCGAGACATGAAAAGCTTGTGAGTGAATTCAACCAGTCAAACAGTTCTGCTACACCAACTCAACTAAGGTGGAAGCCTGTTGAGATACCAGAAACACCGACTGATTTCATTGATGGTTTGTATACTATATGCGGGGCTGGCAGCTCATATCTCCGACATGGTTTTGCAATTCACAT.........................................................................................................................................................................................................................................................................................................................................GTATACTGCCAACAAATCAATGGAGAACTCTGCCTTCTGCAATGCTGATGGCGACTTTCTGATTGTTCCTCAAAAAGGAA................................................................................................GGCTGTGGATTACTACTGAATGCGGAAGATTGCAGGTTTGTCCTGGTGAAATTGTGATTTTGCCTCAAGGATATAGGTTTGCTGTTGACCTTCCGGATGGACCTTCACGTGGTTATGTCGCTGAAACTTTTGGAACTCATCTTCAACTTCCTGATCTGGGGCCAATAG..................................................................................GCGCAAATGGTCTAGCTGCTCCAAGGGATTTTCTTGTTCCTGTTGCCTGGTACGGAGATGGCTCCCGTCCAGGTTACACTATTGTGCAGAAGTATGGTGGTGAACTCTTCACTGCGAAGCAGGACTTCTCTCCTTTTAATGTGGTCGCTTGGCATGGCAATTATGTTCCTTATAAG..........................................................................................................................................TATGATTTAAGCAAGTTCTGCCCTTACAATACTGTATTGATGGACCACAGTGATCCTTCAATTAACACAG.......................................................................................................................TTTTGACAGCACCAACAGATAAACCTGGTGTGGCGTTGCTTGACTTTGTCATTTTCCCTCCCCGGTGGTTGGTTGCTGAACACACCTTCCGTCCTCCATATTATCATCGCAATTGTATGAGCGAATTTATGGGTCTAATCTATGGCGGATACGAG....................................................................................GCAAAAGCTGATGGTTTTCACCCTGGCGGGGCAAGCCTTCACAGCTGCATGACTCCTCATGGTCCTGATACCAAAACATTTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACCATTGCACTTGGAAATGAAGCTGGTCCACATAGAATAGCTGATACCATGGCTTTCATGTTTGAGTCTTGCCTAGTACCCCGAGTCTGTCCGTGGGCTCTTGAATCTCCGTTTATGGATCACGATTATTACCAATGCTGGATTGGCTTGAAGTCTCACTTCTCAGGACTATCTATGAACGAAGACAACGTCGATTTGCAGAAAGGAAAACCCATAGAAAGGTGAAATGCTCATTGTTCAGCTAGCTCCTGTAGTTCCTCCTAAAGTGACTTAAACTTGTACATAAGGAGTCACAGGCATGTAAAACATAAAATAAACCCTATGTTAGTATCAGATTGAAAGTTTAGGGTGGCGATCCAAGCGCGGATGTAGTGGTAAGATGAAACCAATGTTCTATGAAATTGCGACGCAAGTAAAAATGTGTTACCGTGATGATGTTGCATGTAGACTTGTAGTTTATGGTGCATTTTGTATATATATAAAGATGGAACTATCATGGAAATACTTGTTGCAATTACAAGAGCAATGAATTAAGTAATGATTTATGGCAATGTTTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0021L02-xwr9p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317895" ref_strand="+" ref_description="SGN-U317895        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | homogentisate 1,2-dioxygenase / homogentisicase/homogentisate oxygenase / homogentisic acid oxidase (HGO), identical to SP:Q9ZRA2 Homogentisate 1,2-dioxygenase (EC 1.13.11.5) (Homogentisicase) (Homogentisate oxygenase) (Homogentisic acid oxidase) {Arabidopsis thaliana}; contains Pfam profile PF04209: homogentisate 1,2-dioxygenase | chr5:21963095-21966139 FORWARD | Aliases: None(evalue: 2e-62, score=143) genbank/nr: gi|8131905|gb|AAF73132.1| homogentisate 1,2-dioxygenase [Lycopersicon esculentum](evalue: 2e-77, score=180)">
      <seq>agaacttccaattttccttctgatttggagtaccaaacaggatttgggaatcatttttcatctgaagctatagttggagctctacctcaaggtcaaaatagtcctcttatttgcccctttggactttatgctgagcagatctctggcacctcttttacttcccctcgcaaacttaatcaacgcaggtatactgccaacaaatcaatggagaactctgccttctgcaatgctgatggcgactttctgattgttcctcaaaaaggaaggctgtggattactactgaatgcggaagattgcaggtttgtcctggtgaaattgtgattttgcctcaaggatataggtttgctgttgaccttccggatggaccttcacgtggttatgtcgctgaaacttttggaactcatcttcaacttcctgatctggggccaataggtgctttagaaagtgcaatcctatttgctgtttaaacagctgatgttatttactgatgatatggatttgcacatgtatttaggcgcaaatggtctagctgctccaagggattttcttgttcctgttgcctggtacggagatggctcccgtccaggttacactattgtgcagaagtatggtggtgaactcttcactgcgaagcaggacttctctccttttaatgtggtcgcttggcatggcaattatgttccttataaggcgggtatttctctatatttcaatctctcataatatgagtgcccttgtgcactttttatcacaatttactttgctacatggaaacttgatgctgtatgcctccttagtcctgacgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-xwr9p/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="63515" stop="67377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63815" g_stop="63999" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64000" i_stop="66358" i_length="2359">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66359" g_stop="66438" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="265" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66439" i_stop="66534" i_length="96">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66535" g_stop="67077" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="808" r_length="543" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-U317895" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63815" e_stop="63999"/>
          <exon e_start="66359" e_stop="66438"/>
          <exon e_start="66535" e_stop="67077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACTTCCAATTTTCCTTCTGATTTGGAGTACCAAACAGGATTTGGGAATCATTTTTCATCTGAAGCTATAGTTGGAGCTCTACCTCAAGGTCAAAATAGTCCTCTTATTTGCCCCTTTGGACTTTATGCTGAGCAGATCTCTGGCACCTCTTTTACTTCCCCTCGCAAACTTAATCAACGCAGGTAACATACCTTCGTTTGCTTAATTACTAAGCCTGTTGGAGAATCCGCCTAATCACCTCCCTTTGTTATCTCGTCCTAATTCTGCATATAGTTCAAAGTTATTGCAGCTTAATTAGTTAGGCGTTTGGATAATGGAAAACACGACAAATCTGAACTATCGTAAATGGTATGTTGTACCTCCTGCATTAGTGTCTGTAATTGTCCACCCTTCGGTCTAACGGTTGACTAAATAAGAAGACGTGTCATAAAATGAAAAAGAGTCTAAAATACCTTAAAGTATTGAAAATGGTACAAAATTATTCATTCATCCGTCTTTCATCCAACTATTGACATCAAAATTGACCATTTTTTTAATTGTTTTAAAATTAAACTCTTTATATATTTTTTAAAATACTTGGCATTCAACTATTGGTCATAATATAATTTATTAATATAATTTATAAACTAACTAACTATCCACTTATTACTAATTAAATTTCACCCAATTAATAATTCAATTATAATATCAAAATCGTCATAAACACTACTAAAACACGATGAAATTATAGATTCCTGAAAATGACATCCAAAATTATTCGAGTCCGAATCAAGCCCCAATTAAATTTAGGTTGAGTAGCTTATTTAGGAGGACACTATCTTTTAAAATTGAACTAGAAATTTATGATTAAAGGTAAAGAAGTAATACATCCCGAATTGATTCATGCACTTTTTTTAAATATAATTTTATAAAAATTTATGATTTGTTTTAAAATCTTAGTATATTATTTTAAAAAAAGTTAACTATGAACTAACATCACATAATTGAGACATAAGAATAATTAAGATAAACATAGTCAGACTTTTAAGTATATCGATAATTTTTATTTAGACACTTGAATGTATGATAATTTACTTCTGTAGATATTTTCGGTTTAAGTTTTTAAAAACACTCAATTGGCAGTAGCTAATTTGTTGTTGTATTAATAATGTGATAGGTTTATTAATTTAGAGGGGTTTAATTATTAATGGGTGGGTAGTGGATTGATTTATAAATTATACTAATAAGTTAAGTTATAATAAATAGTTGAGCACTACGTATTTAAAAAAAATATTTAAATAGTTTAAATATAAAACCGTTAAATAAGTGGTCAATTTTGAATCAAAAGGTGGATGACAAGGATATTTTGGACTCAATAGGTGAGTGTGAAGAATATTTTGGAGCCAATAGGTGGATGGATGACAAGGGTATTTTGGACTCAATAGGTGAGTGGGAAGAATATTTTGGAGCCAATAGGTGGATGGAGGGTAATTTTGTACCATTTCCAATACTTTGAGGGTATTTTAGGCCCTTTTCTGTTTAATAAATTGATTGGTATATACAATTATGACACGTGTATGTCGAGTATATATGCTAGTTTTTAGATGGTAGGATATCAATGTCCCAAAAGAATGACAGAGGATAGTACAATAGTTTGTGGAATATATTTGTCCTTTTTCCCTTTGATAATATAAGGTTTTTAGTTTAAAATGGGGTTTGGATATAAGAAAGTGTTTGGATTGGAGTGAAATTGTTAAGTTTTTTGATATTTTGTCAATATTTCAGATAATGAAACTGATTGCCTAACTTCAATGACTTTGGCCATTCACACTAATGAACAGTTATCACTCTTCCATATAAAAATGTGTTAGCTAATTAAAATGAGACCTTTTCTTTCTTTTGTTAATGGATTTTGAGGGTTTGAATAAATGACCATTTAGGATGGAGGTGTAATTGATGGATAGGTTGGTTATGTTACTGAAGGAATCTTTTGTTTGTGCAGTTGGCTATATCGTATTAAGCCATCGGTTACACATGAACCGTTTAGACCAAGAATGCCGAGACATGAAAAGCTTGTGAGTGAATTCAACCAGTCAAACAGTTCTGCTACACCAACTCAACTAAGGTGGAAGCCTGTTGAGATACCAGAAACACCGACTGATTTCATTGATGGTTTGTATACTATATGCGGGGCTGGCAGCTCATATCTCCGACATGGTTTTGCAATTCACATGTAATTGGTATTTCAAACTTGTTGTCACTATGTCCTTCTGATGGTGTTCGGGATATAGTTGTTTCTTTCTTGTTTATGCTTTGTTCATGTTAAAATATAATTGGTATTGAGATTTGTTATGCTTTGGATATAAACATTGGCTTCAAACTCTGTTGCTATTTGCTTTTAAACTGAGAGTATATCGTATCTCCTTGACATAATGGACTATAAATCTGCTAAATGAATTTCTATTGTGAATAGACAATGATGTGTATTGAATATATACTCAGCATAACACCTATTACAAAGTTCAGTAGATCAAGTAATAATGTGTCTTGTTGAAAATGCAGGTATACTGCCAACAAATCAATGGAGAACTCTGCCTTCTGCAATGCTGATGGCGACTTTCTGATTGTTCCTCAAAAAGGAAGTAAGTGTTGATCAGTCAGGTGTCATCTCTCTGTTTGTAGTCAGCGTCAAATATATGTGCTTCGGAATTCTTTCTTACTCTCTGTTCATGATGTAGGGCTGTGGATTACTACTGAATGCGGAAGATTGCAGGTTTGTCCTGGTGAAATTGTGATTTTGCCTCAAGGATATAGGTTTGCTGTTGACCTTCCGGATGGACCTTCACGTGGTTATGTCGCTGAAACTTTTGGAACTCATCTTCAACTTCCTGATCTGGGGCCAATAGGTGCTTTAGAAAGTGCAATCCTATTTGCTGTTTAAACAGCTGATGTTATTTACTGATGATATGGATTTGCACATGTATTTAGGCGCAAATGGTCTAGCTGCTCCAAGGGATTTTCTTGTTCCTGTTGCCTGGTACGGAGATGGCTCCCGTCCAGGTTACACTATTGTGCAGAAGTATGGTGGTGAACTCTTCACTGCGAAGCAGGACTTCTCTCCTTTTAATGTGGTCGCTTGGCATGGCAATTATGTTCCTTATAAGGCGGGTATTTCTCTATATTTCAATCTCTCATAATATGAGTGCCCTTGTGCACTTTTTATCACAATTTACTTTGCTACATGGAAACTTGATGCTGTTTGCCTCCTTAGTCCTGACGTA</genome_strand>
        <mrna_strand>AGAACTTCCAATTTTCCTTCTGATTTGGAGTACCAAACAGGATTTGGGAATCATTTTTCATCTGAAGCTATAGTTGGAGCTCTACCTCAAGGTCAAAATAGTCCTCTTATTTGCCCCTTTGGACTTTATGCTGAGCAGATCTCTGGCACCTCTTTTACTTCCCCTCGCAAACTTAATCAACGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATACTGCCAACAAATCAATGGAGAACTCTGCCTTCTGCAATGCTGATGGCGACTTTCTGATTGTTCCTCAAAAAGGAA................................................................................................GGCTGTGGATTACTACTGAATGCGGAAGATTGCAGGTTTGTCCTGGTGAAATTGTGATTTTGCCTCAAGGATATAGGTTTGCTGTTGACCTTCCGGATGGACCTTCACGTGGTTATGTCGCTGAAACTTTTGGAACTCATCTTCAACTTCCTGATCTGGGGCCAATAGGTGCTTTAGAAAGTGCAATCCTATTTGCTGTTTAAACAGCTGATGTTATTTACTGATGATATGGATTTGCACATGTATTTAGGCGCAAATGGTCTAGCTGCTCCAAGGGATTTTCTTGTTCCTGTTGCCTGGTACGGAGATGGCTCCCGTCCAGGTTACACTATTGTGCAGAAGTATGGTGGTGAACTCTTCACTGCGAAGCAGGACTTCTCTCCTTTTAATGTGGTCGCTTGGCATGGCAATTATGTTCCTTATAAGGCGGGTATTTCTCTATATTTCAATCTCTCATAATATGAGTGCCCTTGTGCACTTTTTATCACAATTTACTTTGCTACATGGAAACTTGATGCTGTATGCCTCCTTAGTCCTGACGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0021L02-xwr9p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336323" ref_strand="-" ref_description="SGN-U336323        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | homogentisate 1,2-dioxygenase / homogentisicase/homogentisate oxygenase / homogentisic acid oxidase (HGO), identical to SP:Q9ZRA2 Homogentisate 1,2-dioxygenase (EC 1.13.11.5) (Homogentisicase) (Homogentisate oxygenase) (Homogentisic acid oxidase) {Arabidopsis thaliana}; contains Pfam profile PF04209: homogentisate 1,2-dioxygenase | chr5:21963095-21966139 FORWARD | Aliases: None(evalue: 2e-62, score=143) genbank/nr: gi|8131905|gb|AAF73132.1| homogentisate 1,2-dioxygenase [Lycopersicon esculentum](evalue: 2e-77, score=180)">
      <seq>cccctcgcaaacttaatcaacgcaggtatactgccaacaaatcaatggagaactctgccttctgcaatgctgatggcgactttctgattgttcctcaaaaaggaaggctgtggattactactgaatgcggaagattgcaggtttgtcctggtgaaattgtgattttgcctcaaggatataggtttgctgttgaccttccggatggaccttcacgtggttatgtcgctgaaacttttggaactcatcttcaacttcctgatctggggccaataggtgctttagaaagtgcaatcctatttgctgtttaaacagctgatgttatttactgatgatatggatttgcacatgtatttaggcgcaaatggtctagctgctccaagggattttcttgttcctgttgcctggtacggagatggctcccgtccaggttacactattgtgcagaagtatggtggtgaactcttcactgcgaagcaggacttctctccttttaatgtggtcgcttggcatggcaattatgttccttataaggcgggtatttctctatatttcaatctctcataatatgagtgcccttgtgcactttttatcacaatttactttgctacatggaaacttgatgctgtttgcctccttagtcctgacgtaatatatttcctcaatttgcagtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-xwr9p/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="63675" stop="67400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63975" g_stop="63999" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64000" i_stop="66358" i_length="2359">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66359" g_stop="66438" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="105" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66439" i_stop="66534" i_length="96">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66535" g_stop="67108" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="679" r_length="574" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-U336323" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U336323" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="63975" e_stop="63999"/>
          <exon e_start="66359" e_stop="66438"/>
          <exon e_start="66535" e_stop="67108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCTCGCAAACTTAATCAACGCAGGTAACATACCTTCGTTTGCTTAATTACTAAGCCTGTTGGAGAATCCGCCTAATCACCTCCCTTTGTTATCTCGTCCTAATTCTGCATATAGTTCAAAGTTATTGCAGCTTAATTAGTTAGGCGTTTGGATAATGGAAAACACGACAAATCTGAACTATCGTAAATGGTATGTTGTACCTCCTGCATTAGTGTCTGTAATTGTCCACCCTTCGGTCTAACGGTTGACTAAATAAGAAGACGTGTCATAAAATGAAAAAGAGTCTAAAATACCTTAAAGTATTGAAAATGGTACAAAATTATTCATTCATCCGTCTTTCATCCAACTATTGACATCAAAATTGACCATTTTTTTAATTGTTTTAAAATTAAACTCTTTATATATTTTTTAAAATACTTGGCATTCAACTATTGGTCATAATATAATTTATTAATATAATTTATAAACTAACTAACTATCCACTTATTACTAATTAAATTTCACCCAATTAATAATTCAATTATAATATCAAAATCGTCATAAACACTACTAAAACACGATGAAATTATAGATTCCTGAAAATGACATCCAAAATTATTCGAGTCCGAATCAAGCCCCAATTAAATTTAGGTTGAGTAGCTTATTTAGGAGGACACTATCTTTTAAAATTGAACTAGAAATTTATGATTAAAGGTAAAGAAGTAATACATCCCGAATTGATTCATGCACTTTTTTTAAATATAATTTTATAAAAATTTATGATTTGTTTTAAAATCTTAGTATATTATTTTAAAAAAAGTTAACTATGAACTAACATCACATAATTGAGACATAAGAATAATTAAGATAAACATAGTCAGACTTTTAAGTATATCGATAATTTTTATTTAGACACTTGAATGTATGATAATTTACTTCTGTAGATATTTTCGGTTTAAGTTTTTAAAAACACTCAATTGGCAGTAGCTAATTTGTTGTTGTATTAATAATGTGATAGGTTTATTAATTTAGAGGGGTTTAATTATTAATGGGTGGGTAGTGGATTGATTTATAAATTATACTAATAAGTTAAGTTATAATAAATAGTTGAGCACTACGTATTTAAAAAAAATATTTAAATAGTTTAAATATAAAACCGTTAAATAAGTGGTCAATTTTGAATCAAAAGGTGGATGACAAGGATATTTTGGACTCAATAGGTGAGTGTGAAGAATATTTTGGAGCCAATAGGTGGATGGATGACAAGGGTATTTTGGACTCAATAGGTGAGTGGGAAGAATATTTTGGAGCCAATAGGTGGATGGAGGGTAATTTTGTACCATTTCCAATACTTTGAGGGTATTTTAGGCCCTTTTCTGTTTAATAAATTGATTGGTATATACAATTATGACACGTGTATGTCGAGTATATATGCTAGTTTTTAGATGGTAGGATATCAATGTCCCAAAAGAATGACAGAGGATAGTACAATAGTTTGTGGAATATATTTGTCCTTTTTCCCTTTGATAATATAAGGTTTTTAGTTTAAAATGGGGTTTGGATATAAGAAAGTGTTTGGATTGGAGTGAAATTGTTAAGTTTTTTGATATTTTGTCAATATTTCAGATAATGAAACTGATTGCCTAACTTCAATGACTTTGGCCATTCACACTAATGAACAGTTATCACTCTTCCATATAAAAATGTGTTAGCTAATTAAAATGAGACCTTTTCTTTCTTTTGTTAATGGATTTTGAGGGTTTGAATAAATGACCATTTAGGATGGAGGTGTAATTGATGGATAGGTTGGTTATGTTACTGAAGGAATCTTTTGTTTGTGCAGTTGGCTATATCGTATTAAGCCATCGGTTACACATGAACCGTTTAGACCAAGAATGCCGAGACATGAAAAGCTTGTGAGTGAATTCAACCAGTCAAACAGTTCTGCTACACCAACTCAACTAAGGTGGAAGCCTGTTGAGATACCAGAAACACCGACTGATTTCATTGATGGTTTGTATACTATATGCGGGGCTGGCAGCTCATATCTCCGACATGGTTTTGCAATTCACATGTAATTGGTATTTCAAACTTGTTGTCACTATGTCCTTCTGATGGTGTTCGGGATATAGTTGTTTCTTTCTTGTTTATGCTTTGTTCATGTTAAAATATAATTGGTATTGAGATTTGTTATGCTTTGGATATAAACATTGGCTTCAAACTCTGTTGCTATTTGCTTTTAAACTGAGAGTATATCGTATCTCCTTGACATAATGGACTATAAATCTGCTAAATGAATTTCTATTGTGAATAGACAATGATGTGTATTGAATATATACTCAGCATAACACCTATTACAAAGTTCAGTAGATCAAGTAATAATGTGTCTTGTTGAAAATGCAGGTATACTGCCAACAAATCAATGGAGAACTCTGCCTTCTGCAATGCTGATGGCGACTTTCTGATTGTTCCTCAAAAAGGAAGTAAGTGTTGATCAGTCAGGTGTCATCTCTCTGTTTGTAGTCAGCGTCAAATATATGTGCTTCGGAATTCTTTCTTACTCTCTGTTCATGATGTAGGGCTGTGGATTACTACTGAATGCGGAAGATTGCAGGTTTGTCCTGGTGAAATTGTGATTTTGCCTCAAGGATATAGGTTTGCTGTTGACCTTCCGGATGGACCTTCACGTGGTTATGTCGCTGAAACTTTTGGAACTCATCTTCAACTTCCTGATCTGGGGCCAATAGGTGCTTTAGAAAGTGCAATCCTATTTGCTGTTTAAACAGCTGATGTTATTTACTGATGATATGGATTTGCACATGTATTTAGGCGCAAATGGTCTAGCTGCTCCAAGGGATTTTCTTGTTCCTGTTGCCTGGTACGGAGATGGCTCCCGTCCAGGTTACACTATTGTGCAGAAGTATGGTGGTGAACTCTTCACTGCGAAGCAGGACTTCTCTCCTTTTAATGTGGTCGCTTGGCATGGCAATTATGTTCCTTATAAGGCGGGTATTTCTCTATATTTCAATCTCTCATAATATGAGTGCCCTTGTGCACTTTTTATCACAATTTACTTTGCTACATGGAAACTTGATGCTGTTTGCCTCCTTAGTCCTGACGTAATATATTTCCTCAATTTGCAGTATGATTTAA</genome_strand>
        <mrna_strand>CCCCTCGCAAACTTAATCAACGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATACTGCCAACAAATCAATGGAGAACTCTGCCTTCTGCAATGCTGATGGCGACTTTCTGATTGTTCCTCAAAAAGGAA................................................................................................GGCTGTGGATTACTACTGAATGCGGAAGATTGCAGGTTTGTCCTGGTGAAATTGTGATTTTGCCTCAAGGATATAGGTTTGCTGTTGACCTTCCGGATGGACCTTCACGTGGTTATGTCGCTGAAACTTTTGGAACTCATCTTCAACTTCCTGATCTGGGGCCAATAGGTGCTTTAGAAAGTGCAATCCTATTTGCTGTTTAAACAGCTGATGTTATTTACTGATGATATGGATTTGCACATGTATTTAGGCGCAAATGGTCTAGCTGCTCCAAGGGATTTTCTTGTTCCTGTTGCCTGGTACGGAGATGGCTCCCGTCCAGGTTACACTATTGTGCAGAAGTATGGTGGTGAACTCTTCACTGCGAAGCAGGACTTCTCTCCTTTTAATGTGGTCGCTTGGCATGGCAATTATGTTCCTTATAAGGCGGGTATTTCTCTATATTTCAATCTCTCATAATATGAGTGCCCTTGTGCACTTTTTATCACAATTTACTTTGCTACATGGAAACTTGATGCTGTTTGCCTCCTTAGTCCTGACGTAATATATTTCCTCAATTTGCAGTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0021L02-xwr9p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324621" ref_strand="+" ref_description="SGN-U324621        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: AT1G53210.1 | Symbol: None | sodium/calcium exchanger family protein / calcium-binding EF hand family protein, contains Pfam profiles: PF01699 sodium/calcium exchanger protein, PF00036 EF hand | chr1:19848300-19851504 FORWARD | Aliases: F12M16.12, F12M16_12 (evalue: 1e-116, score=416) genbank/nr: gi|22137208|gb|AAM91449.1| At1g53210/F12M16_12 [Arabidopsis thaliana] >gi|13605639|gb|AAK32813.1| At1g53210/F12M16_12 [Arabidopsis thaliana] (evalue: 8e-115, score=416)">
      <seq>acggattcagcttgacgggtctttcagccttggatacagagtagacgtcttgcttatgtaaaacataaacatgttatatcaggagttttgagacagttaagaatgcgtgcattggggaggctttgcacagaccagggagcaccaaatatagaagttttagaaaagctattcaacgcaattgatgaaaatgaggatgggcatctttcccgtactgaattaaaagctctggtagtaggaatccgtttggaggagataaacttacatgagaatgatgctgtagaaaaactgatgaaggacttcgatacttcacatgatcatcaagttgaaatgtccgagttcattgctggagttacaaaatggcttactgaggccaggggttccgaggctccttctcctgaagctggtcctgatacaatgaagtacctcgatgacttgcatgagcaaacaaggagagaacaccatttcttaggggatcaaagtgacgaaagtgttgagactgttgagaatcctagatcaactgcaattaaggctgttctactgcttttgctgggtactgtcattgctgccgtctttgctgatcctctggttgatgctgtcaataatttctctagtgccacaagcattccttctttcttcatctcattcattgctctgccactggcgaccaactccagtgaggcggtgtcagctattatctttgctagccggaaaaagttgagatctgcatcattaacattttctgagttgtatggagcagtgacaatgaacaatctcctttgtctatcagtcttcctggctctcgtctatatcagaggattgacatgggacttctcgtctgaagtcttggttattctaattgtctgtgttgtcgtgggggtctttgcaagcgtccgaagcacctttcctctttggacttccttgctagcttttctactttaccccttctctctcgtacttgtatatgttcttgactacaaatttggttggtcttagtcttggacgactctttttgttgaacttgtatgcatcttttgagctacggcacactttagtcgctcttggattttctagtagaacttcagtaacttgaaaactgaagtcatttgtttacttacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagggggggggggggggcccccccccccttttccccaaaggaggaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-xwr9p/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="73099" stop="131888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73399" g_stop="73416" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73417" i_stop="74319" i_length="903">
            <donor d_prob="0.561" d_score="0.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74320" g_stop="74465" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="164" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74466" i_stop="74542" i_length="77">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.446" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74543" g_stop="74819" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="441" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74820" i_stop="74895" i_length="76">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74896" g_stop="75198" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="744" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75199" i_stop="75524" i_length="326">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75525" g_stop="75896" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="745" r_stop="1116" r_length="372" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="75897" i_stop="76411" i_length="515">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76412" g_stop="76428" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1117" r_stop="1133" r_length="17" r_score="0.588"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="76429" i_stop="77182" i_length="754">
            <donor d_prob="0.632" d_score="0.00"/>
            <acceptor a_prob="0.855" a_score="0.49"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="77183" g_stop="77223" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1134" r_stop="1173" r_length="40" r_score="0.488"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="77224" i_stop="77305" i_length="82">
            <donor d_prob="0.760" d_score="0.49"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="77306" g_stop="77336" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1174" r_stop="1204" r_length="31" r_score="0.581"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-U324621" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1205</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U324621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73399" e_stop="73416"/>
          <exon e_start="74320" e_stop="74465"/>
          <exon e_start="74543" e_stop="74819"/>
          <exon e_start="74896" e_stop="75198"/>
          <exon e_start="75525" e_stop="75896"/>
          <exon e_start="76412" e_stop="76428"/>
          <exon e_start="77183" e_stop="77223"/>
          <exon e_start="77306" e_stop="77336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGATTCAGCTTGACGGGTTTGCATCTCAACTCTTAGAATATGTATACCGAAACATGTACAAGCTCCATGTTCTTTACTTCTTTTGTCTTTCCTGAAATATGTTGCTGTAGATCTCTTTCGGCTTTCTTTCACCTGTGCCCTTGTATGAATTAAATATGCTCTAGTCTTTGAAATCATTGGGCCACAAGGAGGATTTTGTGTACTTGTGCAAGTGATATTCCTGCTAGTATATGGCAGATTTTGTGTATCAAGATGCTTCTACTCAATGAGTGGCTGTCAATGTAGGTTCTGGTGTTAGTACTGACATCTGGACAAGCCATGCTGCAACGATAATGGCAGCATCTGTAACACCATTTCTTGTTGTCCAACTGCCACAGCTCCTCCATTCAACTTCAGGAAGACATTTATCTGTCTTGATTGGTCTTATCATTTCACTTACTCTGCTTGTTTCTTATTGCATCTATCAGGTACTGTGACATTGCCCATGTGTTTTTTTCTTTTATTCACTGTGGGCAATCTAATTTTCTTTGCAACTGCAATGATGTATCTGCAGAGATTTGCATTGACTACAGACTTTGGAGATGAATATCAATTTTTACAGTTTCTAGCTGAATTTCAAATAGGCAATAACAACAAGACCTATGATTGACCATGCTTTAAATAGTTTTTATCCCCACTATCCTGGATAATGGACTTTCCGCATAACCACCTGAGTTAAAATTGAATTCGTATCAGAAGATAACCTGATTACTCCTGTATACCTCTTCGTCTTCCAACAAGATGAAACAAATAAATATAAATCTTTGTCATTCTTTATACTAGGCTGGTTAATAAACCCACTTTTTAGTGTTTGAGATCACGAGGCCTGAAACTTATCTTCTTTGATGAAGTTGTTCTGAACTTCTAACTTCCAATGCAGGTCTTTCAGCCTTGGATACAGAGTAGACGTCTTGCTTATGTAAAACATAAACATGTTATATCAGGAGTTTTGAGACAGTTAAGAATGCGTGCATTGGGGAGGCTTTGCACAGACCAGGGAGCACCAAATATAGAAGTTTTAGAAAAGTAAGTTTGAAATGATTTCTGCACAGTTCTAATCGGTTTTAGAATCTTGATCAATATGATGAAGGATTACATGACAGGCTATTCAACGCAATTGATGAAAATGAGGATGGGCATCTTTCCCGTACTGAATTAAAAGCTCTGGTAGTAGGAATCCGTTTGGAGGAGATAAACTTACATGAGAATGATGCTGTAGAAAAACTGATGAAGGACTTCGATACTTCACATGATCATCAAGTTGAAATGTCCGAGTTCATTGCTGGAGTTACAAAATGGCTTACTGAGGCCAGGGGTTCCGAGGCTCCTTCTCCTGAAGCTGGTCCTGATACAATGAAGTACCTCGATGACTTGCATGAGGTTTGTTGAGTGTTCTGGCCTTCTCTATATAATTCATTGTCGTGACGATAGTGATAAAGTATAAACTTGCTTGCAGCAAACAAGGAGAGAACACCATTTCTTAGGGGATCAAAGTGACGAAAGTGTTGAGACTGTTGAGAATCCTAGATCAACTGCAATTAAGGCTGTTCTACTGCTTTTGCTGGGTACTGTCATTGCTGCCGTCTTTGCTGATCCTCTGGTTGATGCTGTCAATAATTTCTCTAGTGCCACAAGCATTCCTTCTTTCTTCATCTCATTCATTGCTCTGCCACTGGCGACCAACTCCAGTGAGGCGGTGTCAGCTATTATCTTTGCTAGCCGGAAAAAGTTGAGATCTGCATCATTAACATTTTCTGAGGTTTGTTTTCTTAGAGCTTTGTGCTTTTATGTAGTATAATAATTTGTGGGTTTTCTACCCCTCACTTGCATCAATGAACCTGGAAGATCATTAATAAAAATCAAGAGGCAGACTTGAAGGTTTCCCAATTTGTCAAATCCCTTACGATCATTTCTGTAAATGGCTGGAGCGGATTTAATGTAGGACAGTTAATCCTCAATATCCCTTTTGCTCCATTTTAACCTTTTTTGTTTAAACATCCAATAATTTAGATTTGAGCAGTTTGATCGCATGTATCACTGATACAATTGCCTTTGTTTGATAACATGTGTGATTGTACCTTGCAGTTGTATGGAGCAGTGACAATGAACAATCTCCTTTGTCTATCAGTCTTCCTGGCTCTCGTCTATATCAGAGGATTGACATGGGACTTCTCGTCTGAAGTCTTGGTTATTCTAATTGTCTGTGTTGTCGTGGGGGTCTTTGCAAGCGTCCGAAGCACCTTTCCTCTTTGGACTTCCTTGCTAGCTTTTCTACTTTACCCCTTCTCTCTCGTACTTGTATATGTTCTTGACTACAAATTTGGTTGGTCTTAGTCTTGGACGACTCTTTTTGTTGAACTTGTATGCATCTTTTGAGCTACGGCACACTTTAGTCGCTCTTGGATTTTCTAGTAGAACTTCAGTAACTTGAAAACTGAAGTCATTTGTTTACTTACAATTTCCCACTGCTGTTTATTGGTTACAGGTTTTGAGTGTTCTCTCTAGTCTCTAGTCAATCATCTCATTATTGTTGAGCAGACTGCTTCTGCGCTTCCATTTATCTCTTTAAAAGTTCTGATGTACTTCTCTGCTAAGCACACTTCTTTTTAACCCCTCTCAAGGAACTCCAACTTTTTGCTCCCTTGGTACTCGAATTCACGACTTTCGGGGGATTGAAAGTGAGGAGTGCTTACGTACTGTTTTGCACACTTAAACCAGAAGGGACACTCATTCCGAAACGGCTTGTCGTTTAATAACCTAATTGATCATAGGTCATTAGAATGATAGATCAGCCCAACCTTGGATGGATTGCACTAGCAGATCAAATGGGGAACGAGTTAATAAATGAACAAGTCATTAGCCCACTAAACTTGAGAGTTAAGTCATATTTTTATAGGTTAATTTTGCTACATGTGACCTGTAGGCAAGAGTAAAGCATTTAGGCATCTAATTTTCTGCCTATTCTAATAAACAGACAGAGACACAACAAGTGCGAAACATATTTTGTTCAATACTTGATTTAAACAAGTTACTACAGCTAGAATTCTCAGCATTTCACTTGCCTCGTGGAACTGAAGACATGTGAAAATATAATAATCTAACTCGCCACGCAGAAGAGGGTAACAGTTTACAGAAGTTAAGGTACCAGAAAGACCTGAATCCAGACATCCTAGTTGAAAATTCCAATCAAAATCTCATTCGTCATCCCATCATGGACGCAGAGTCCGGAGGTTAATCCAACCCTCTGGTATGAGGCATATTTTACATGTGAGTAAAGACATACATCAGAAGAAACGTTGTTCTACCACAGAGTGGAATGAAAGCCCTGCAGAAACTAACACCTTAGGACTTGAACTAGCCATCCTACGAAGAGCAGAAATTCTCCCGGAAGAAGCACAACCATGTGTAATGACTAACTTCTACAGCTTCAGATTGAGATCAATGTTTCCTCCTACTTCAACATGGCAATTGCGTTTGTTTGTTCCTTCTTGGCTGATTTGTACCTTGGCAGTTGGGAAGAATCCATAGATGGATTGTTGAACTGATTTGCTTAGGGCTGAGCTTGTTGTAGTAGGTTCTTCAGCAACTCCCTGTGGATTTAACCAAGGCAAGAAGACTGTTACACCAAAATTGAGATACCAATAGATAAAGGCATCAAAACATAAAAGTGTAGACCTTTGTTCTCACCTGACAAGTCACTGATTCCAATCTAAATCTCTCTAGACTCTGAAGGTTTGAATTAGATGAATGCTGATATGGAGAAGCGGCTGTAGGAGGAGCCAACGTGAGAAAATCTCCATTGAGAGCTTTATTTTGCCTGATAACATCCCTTGGTTTGGACTCGGATAGAGTCCTTGATCCTGAAGGAGCTTCTCTGGAGAAAAGAGTAAAAAAAAA</genome_strand>
        <mrna_strand>ACGGATTCAGCTTGACGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTTCAGCCTTGGATACAGAGTAGACGTCTTGCTTATGTAAAACATAAACATGTTATATCAGGAGTTTTGAGACAGTTAAGAATGCGTGCATTGGGGAGGCTTTGCACAGACCAGGGAGCACCAAATATAGAAGTTTTAGAAAA.............................................................................GCTATTCAACGCAATTGATGAAAATGAGGATGGGCATCTTTCCCGTACTGAATTAAAAGCTCTGGTAGTAGGAATCCGTTTGGAGGAGATAAACTTACATGAGAATGATGCTGTAGAAAAACTGATGAAGGACTTCGATACTTCACATGATCATCAAGTTGAAATGTCCGAGTTCATTGCTGGAGTTACAAAATGGCTTACTGAGGCCAGGGGTTCCGAGGCTCCTTCTCCTGAAGCTGGTCCTGATACAATGAAGTACCTCGATGACTTGCATGAG............................................................................CAAACAAGGAGAGAACACCATTTCTTAGGGGATCAAAGTGACGAAAGTGTTGAGACTGTTGAGAATCCTAGATCAACTGCAATTAAGGCTGTTCTACTGCTTTTGCTGGGTACTGTCATTGCTGCCGTCTTTGCTGATCCTCTGGTTGATGCTGTCAATAATTTCTCTAGTGCCACAAGCATTCCTTCTTTCTTCATCTCATTCATTGCTCTGCCACTGGCGACCAACTCCAGTGAGGCGGTGTCAGCTATTATCTTTGCTAGCCGGAAAAAGTTGAGATCTGCATCATTAACATTTTCTGAG......................................................................................................................................................................................................................................................................................................................................TTGTATGGAGCAGTGACAATGAACAATCTCCTTTGTCTATCAGTCTTCCTGGCTCTCGTCTATATCAGAGGATTGACATGGGACTTCTCGTCTGAAGTCTTGGTTATTCTAATTGTCTGTGTTGTCGTGGGGGTCTTTGCAAGCGTCCGAAGCACCTTTCCTCTTTGGACTTCCTTGCTAGCTTTTCTACTTTACCCCTTCTCTCTCGTACTTGTATATGTTCTTGACTACAAATTTGGTTGGTCTTAGTCTTGGACGACTCTTTTTGTTGAACTTGTATGCATCTTTTGAGCTACGGCACACTTTAGTCGCTCTTGGATTTTCTAGTAGAACTTCAGTAACTTGAAAACTGAAGTCATTTGTTTACTTACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAG-GGGGGGGGGGGGGGCCCCC..................................................................................CCCCCCTTTTCCCCAAAGGAGGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0021L02-xwr9p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337258" ref_strand="+" ref_description="SGN-U337258        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>gagtgataaatgtcctaaattgtggagttgtgagtacagtcctgaaagagaaagcaaacagggaaatcgtcatggtgttgttttcggggctaatgtagatttgccaaatgaactgcataaccccattttacctctacccagtgtgctgcaaagatcacaacaatatcagcaaccttcttgttcttcatcaatgatgaatatctcatcagggatttcatcatcatctgtactaaattatcagatggagcccccttcaaaccaaaattattattcgtgtaattatttacctctgtggcctgaagatgtgaagatggttggcatgaagagaccatatcccttcactccagagtttccaccagtccctacatttcactgcaaatttcctccagcctatgttaaccttgcatcgagatcacctgaatcagcttcctgcagcaatgaatgtgcagccagtttagaatcaggaaatttgctcaaaagagaagctccttcaggatcaaggactctatccgagtccaaaccaagggatgttatcaggcaaaataaagctctcaatggagattttctcacgttggctcctcctacagccgcttctccatatcagcattcatctaattcaaaccttcagagtctagagagatttagattggaatcagtgacttgtcagggagttgctgaagaacctactacaacaagctcagccctaagcaaatcagttcaacaatccatctatggattcttcccaactgccaaggtacaaatcagccaagaaggaacaaacaaacggcattgccatgttgaagtaagaggaaacattgatctcaatctgaagctgtagaagttagtcattacacatggttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-xwr9p/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="79189" stop="76535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78889" g_stop="78697" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78696" i_stop="78579" i_length="118">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78578" g_stop="78462" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="310" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78461" i_stop="77564" i_length="898">
            <donor d_prob="0.846" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77563" g_stop="77394" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="480" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77393" i_stop="77314" i_length="80">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.668" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77313" g_stop="77127" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="667" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77126" i_stop="77030" i_length="97">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77029" g_stop="76835" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="862" r_length="195" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-U337258" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U337258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78889" e_stop="78697"/>
          <exon e_start="78578" e_stop="78462"/>
          <exon e_start="77563" e_stop="77394"/>
          <exon e_start="77313" e_stop="77127"/>
          <exon e_start="77029" e_stop="76835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTGATAAATGTCCTAAATTGTGGAGTTGTGAGTACAGTCCTGAAAGAGAAAGCAAACAGGGAAATCGTCATGGTGTTGTTTTCGGGGCTAATGTAGATTTGCCAAATGAACTGCATAACCCCATTTTACCTCTACCCAGTGTGCTGCAAAGATCACAACAATATCAGCAACCTTCTTGTTCTTCATCAATGGTAAGCAAGTTTATTAATTTAGTTGCAATGTTATATATCATCGTTGGATTATCAAGTCTATAATTTTGTTTTGATGTGTTTGAAATGCTCTGATTATATCACTTTGTGGTAACTGCAGATGAATATCTCATCAGGGATTTCATCATCATCTGTACTAAATTATCAGATGGAGCCCCCTTCAAACCAAAATTATTATTCGTGTAATTATTTACCTCTGTGGCCTGAAGATGTGAAGGTAATTTCTTTTATTCTGCGTGTTAGTCACTAATATATAGAAATCAATTTTCATAATGCTCTCTTCTGTCAAAAGGCTGAAATACACTTTACCTGGATATCCTATTGATTCTAGTAAGGATCTTAGTTTGTACAGAACCGTTATGTGAAATGTTCTTTTAATTATAAAGATGGATACATGTCATTTACATCCAATGTGTTGAACATCTCTTTTCTTCGAACTTGATAGTAGAAAACATTATTACACACCTTCTACTGCCAAAACAAGGTAAAGGAGCTTCTCTTTGTGGCCCTAAACTAATATTCAGATACTTGATGAAAAGAGCATCTTAAAAGCGAGAAGAGATGCTCACTCAGCTCAGGTTACACCCTCCACTCCCCACAAATTGTAGGATAGCTCCATAGTTGTCCCTTTGTTGCTCAAACAGTTCTCGTGTTCTTTCATCTAAACAAGCTATCTGAGGATAATGACTTAAAAACCAAGAGACATGTCACAATCACAATTCACAAATGTGTTACACATGTATGCAATCATTATTTCAGTGCGTCAAAGTGGAACTCACAACTAAAGACCCAAAACTAGGTATCTAGATGGTTTGTCTTTGAACTCAAGGGTGTAACATAGTGGTCAATGAAATGGGTCGAGAACCATGAGGTTTAGATGCAAATTTAAACAGAGGCAAAAAACACTAGGTGATTTCTTCCCATATGCCCTTACCCTTGGTGGAAAGAATTACTTTATACTTGTTGCTGGTGAGAGGTGACAGGTTTCCCATGGAATCAGTCGAGTTGCGCGTAAGCTGCTCGATGAACCATGGCTTATACAAAAAAAAAAGATTGTTTAGCTTTAAGTTTTTGGTTGACTGCTACAACTTTGATTACTGATGATGTATTTGTAGATGGTTGGCATGAAGAGACCATATCCCTTCACTCCAGAGTTTCCACCAGTCCCTACATTTCACTGCAAATTTCCTCCAGCCTATGTTAACCTTGCATCGAGATCACCTGAATCAGCTTCCTGCAGCAATGAATGTGCAGCCAGTTTAGAATCAGGAAATTTGCTCAAAAGGTTTGATATCTTGAATGATCATTTCATAGTTTTAGTGCTTTGAATACCCGCTTAGACTTTTTTTTTACTCTTTTCTCCAGAGAAGCTCCTTCAGGATCAAGGACTCTATCCGAGTCCAAACCAAGGGATGTTATCAGGCAAAATAAAGCTCTCAATGGAGATTTTCTCACGTTGGCTCCTCCTACAGCCGCTTCTCCATATCAGCATTCATCTAATTCAAACCTTCAGAGTCTAGAGAGATTTAGATTGGAATCAGTGACTTGTCAGGTGAGAACAAAGGTCTACACTTTTATGTTTTGATGCCTTTATCTATTGGTATCTCAATTTTGGTGTAACAGTCTTCTTGCCTTGGTTAAATCCACAGGGAGTTGCTGAAGAACCTACTACAACAAGCTCAGCCCTAAGCAAATCAGTTCAACAATCCATCTATGGATTCTTCCCAACTGCCAAGGTACAAATCAGCCAAGAAGGAACAAACAAACGCAATTGCCATGTTGAAGTAGGAGGAAACATTGATCTCAATCTGAAGCTGTAGAAGTTAGTCATTACACATGGTTGT</genome_strand>
        <mrna_strand>GAGTGATAAATGTCCTAAATTGTGGAGTTGTGAGTACAGTCCTGAAAGAGAAAGCAAACAGGGAAATCGTCATGGTGTTGTTTTCGGGGCTAATGTAGATTTGCCAAATGAACTGCATAACCCCATTTTACCTCTACCCAGTGTGCTGCAAAGATCACAACAATATCAGCAACCTTCTTGTTCTTCATCAATG......................................................................................................................ATGAATATCTCATCAGGGATTTCATCATCATCTGTACTAAATTATCAGATGGAGCCCCCTTCAAACCAAAATTATTATTCGTGTAATTATTTACCTCTGTGGCCTGAAGATGTGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTGGCATGAAGAGACCATATCCCTTCACTCCAGAGTTTCCACCAGTCCCTACATTTCACTGCAAATTTCCTCCAGCCTATGTTAACCTTGCATCGAGATCACCTGAATCAGCTTCCTGCAGCAATGAATGTGCAGCCAGTTTAGAATCAGGAAATTTGCTCAAAAG................................................................................AGAAGCTCCTTCAGGATCAAGGACTCTATCCGAGTCCAAACCAAGGGATGTTATCAGGCAAAATAAAGCTCTCAATGGAGATTTTCTCACGTTGGCTCCTCCTACAGCCGCTTCTCCATATCAGCATTCATCTAATTCAAACCTTCAGAGTCTAGAGAGATTTAGATTGGAATCAGTGACTTGTCAG.................................................................................................GGAGTTGCTGAAGAACCTACTACAACAAGCTCAGCCCTAAGCAAATCAGTTCAACAATCCATCTATGGATTCTTCCCAACTGCCAAGGTACAAATCAGCCAAGAAGGAACAAACAAACGGCATTGCCATGTTGAAGTAAGAGGAAACATTGATCTCAATCTGAAGCTGTAGAAGTTAGTCATTACACATGGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0021L02-xwr9p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320975" ref_strand="+" ref_description="SGN-U320975        Tomato 200607 #1 [7 ESTs aligned]">
      <seq>gctactagtagaggatcgaaaaaagtgaagcagaaaaaaataccacagagaggacttggtgttgctcaacttgaaaggattataatggaaggggagaaaaaacatgaaaaagatgcaaactttcaaacacctaatgttttggtaccaaattcagttcattctaccaaaactatgtcaaaatgcttagctgttgaaggttctagttttaggcctagttcaatcactttaccaccaccatcaacaatggatctgctttcgaaaaatagtgtctttagaccagatctgtctgccttagttcttgatggtttccgtcccaagactttacaatcatcaaaaccaatgaacatgggtggaggggagttaagttggtcgtctgtttcgggtccagggagtgataaatgtcctaaattgtggagttgtgagtacagtcctgaaagagaaagcaaacagggaaatcgtcatggtgttgttttcggggctaatgtagatttgccaaatgaactgcataaccccattttacctctacccagtgtgctgcaaagatcacaacaatatcagcaaccttcttgttcttcatcaatgatgaatatctcatcagggatttcatcatcatctgtactaaattatcagatggagcccccttcaaaccaaaattattattcgtgtaattatttacctctgtggcctgaagatgtgaagatggttggcatgaagagaccatatcccttcactccagagtttccaccagtccctacatttcactgcaaatttcctccagcctatgttaaccttgcatcgagatcacctgaatcagcttcctgcagcaatgaatgtgcagccagtttagaatcaggaaatttgctcaaaagagaagctccttcaggatcaaggactctatccgagtccaaaccaagggatgttatcaggcaaaataaagctctcaatggagattttctcacgttggctcctcctacagccgcttctccatatcagcattcatctaattcaaaccttcagagtctagagagatttagattggaatcagtgacttgtcagggagttgctgaagaacctactacaacaagctcagccctaagcaaatcagttcaacaatccaatctatggattcttcccaactgccaaggtacaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-xwr9p/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="79578" stop="76634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79278" g_stop="78697" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78696" i_stop="78579" i_length="118">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78578" g_stop="78462" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="699" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78461" i_stop="77564" i_length="898">
            <donor d_prob="0.846" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77563" g_stop="77394" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="700" r_stop="869" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77393" i_stop="77314" i_length="80">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.668" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77313" g_stop="77127" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="870" r_stop="1056" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77126" i_stop="77030" i_length="97">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77029" g_stop="76934" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1057" r_stop="1153" r_length="97" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-U320975" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1152</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79278" e_stop="78697"/>
          <exon e_start="78578" e_stop="78462"/>
          <exon e_start="77563" e_stop="77394"/>
          <exon e_start="77313" e_stop="77127"/>
          <exon e_start="77029" e_stop="76934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTACGAGTAGAGGATCGAAAAAAGTGAAGCAGAAAAAAATACCACAAAGAGGACTTGGTGTTGCTCAACTTGAAAGGATTAGAATGGAAGGGGAGAAAAAACATGAAAAAGATGCAAACTTTCAAACACCTAATGTTTTGGTACCAAATTCAGTTCATTCTACCAAAACTATGTCAAAATGCTTAGCTGTTGAAGGTTCTAGTTTTAGGCCTAGTTCAATCACTTTACCACCACCATCAACAATGGATCTGCTTTCGAAAAATAGTGTCTTTAGACCAGATCTGTCTGCCTTAGTTCTTGATGGTTTCCGTCCCAAGACTTTACAATCATCAAAACCAATGAACATGGGTGGAGGGGAGTTAAGTTGGTCGTCTGTTTCGGGTCCAGGGAGTGATAAATGTCCTAAATTGTGGAGTTGTGAGTACAGTCCTGAAAGAGAAAGCAAACAGGGAAATCGTCATGGTGTTGTTTTCGGGGCTAATGTAGATTTGCCAAATGAACTGCATAACCCCATTTTACCTCTACCCAGTGTGCTGCAAAGATCACAACAATATCAGCAACCTTCTTGTTCTTCATCAATGGTAAGCAAGTTTATTAATTTAGTTGCAATGTTATATATCATCGTTGGATTATCAAGTCTATAATTTTGTTTTGATGTGTTTGAAATGCTCTGATTATATCACTTTGTGGTAACTGCAGATGAATATCTCATCAGGGATTTCATCATCATCTGTACTAAATTATCAGATGGAGCCCCCTTCAAACCAAAATTATTATTCGTGTAATTATTTACCTCTGTGGCCTGAAGATGTGAAGGTAATTTCTTTTATTCTGCGTGTTAGTCACTAATATATAGAAATCAATTTTCATAATGCTCTCTTCTGTCAAAAGGCTGAAATACACTTTACCTGGATATCCTATTGATTCTAGTAAGGATCTTAGTTTGTACAGAACCGTTATGTGAAATGTTCTTTTAATTATAAAGATGGATACATGTCATTTACATCCAATGTGTTGAACATCTCTTTTCTTCGAACTTGATAGTAGAAAACATTATTACACACCTTCTACTGCCAAAACAAGGTAAAGGAGCTTCTCTTTGTGGCCCTAAACTAATATTCAGATACTTGATGAAAAGAGCATCTTAAAAGCGAGAAGAGATGCTCACTCAGCTCAGGTTACACCCTCCACTCCCCACAAATTGTAGGATAGCTCCATAGTTGTCCCTTTGTTGCTCAAACAGTTCTCGTGTTCTTTCATCTAAACAAGCTATCTGAGGATAATGACTTAAAAACCAAGAGACATGTCACAATCACAATTCACAAATGTGTTACACATGTATGCAATCATTATTTCAGTGCGTCAAAGTGGAACTCACAACTAAAGACCCAAAACTAGGTATCTAGATGGTTTGTCTTTGAACTCAAGGGTGTAACATAGTGGTCAATGAAATGGGTCGAGAACCATGAGGTTTAGATGCAAATTTAAACAGAGGCAAAAAACACTAGGTGATTTCTTCCCATATGCCCTTACCCTTGGTGGAAAGAATTACTTTATACTTGTTGCTGGTGAGAGGTGACAGGTTTCCCATGGAATCAGTCGAGTTGCGCGTAAGCTGCTCGATGAACCATGGCTTATACAAAAAAAAAAGATTGTTTAGCTTTAAGTTTTTGGTTGACTGCTACAACTTTGATTACTGATGATGTATTTGTAGATGGTTGGCATGAAGAGACCATATCCCTTCACTCCAGAGTTTCCACCAGTCCCTACATTTCACTGCAAATTTCCTCCAGCCTATGTTAACCTTGCATCGAGATCACCTGAATCAGCTTCCTGCAGCAATGAATGTGCAGCCAGTTTAGAATCAGGAAATTTGCTCAAAAGGTTTGATATCTTGAATGATCATTTCATAGTTTTAGTGCTTTGAATACCCGCTTAGACTTTTTTTTTACTCTTTTCTCCAGAGAAGCTCCTTCAGGATCAAGGACTCTATCCGAGTCCAAACCAAGGGATGTTATCAGGCAAAATAAAGCTCTCAATGGAGATTTTCTCACGTTGGCTCCTCCTACAGCCGCTTCTCCATATCAGCATTCATCTAATTCAAACCTTCAGAGTCTAGAGAGATTTAGATTGGAATCAGTGACTTGTCAGGTGAGAACAAAGGTCTACACTTTTATGTTTTGATGCCTTTATCTATTGGTATCTCAATTTTGGTGTAACAGTCTTCTTGCCTTGGTTAAATCCACAGGGAGTTGCTGAAGAACCTACTACAACAAGCTCAGCCCTAAGCAAATCAGTTCAACAATCC-ATCTATGGATTCTTCCCAACTGCCAAGGTACAAATC</genome_strand>
        <mrna_strand>GCTACTAGTAGAGGATCGAAAAAAGTGAAGCAGAAAAAAATACCACAGAGAGGACTTGGTGTTGCTCAACTTGAAAGGATTATAATGGAAGGGGAGAAAAAACATGAAAAAGATGCAAACTTTCAAACACCTAATGTTTTGGTACCAAATTCAGTTCATTCTACCAAAACTATGTCAAAATGCTTAGCTGTTGAAGGTTCTAGTTTTAGGCCTAGTTCAATCACTTTACCACCACCATCAACAATGGATCTGCTTTCGAAAAATAGTGTCTTTAGACCAGATCTGTCTGCCTTAGTTCTTGATGGTTTCCGTCCCAAGACTTTACAATCATCAAAACCAATGAACATGGGTGGAGGGGAGTTAAGTTGGTCGTCTGTTTCGGGTCCAGGGAGTGATAAATGTCCTAAATTGTGGAGTTGTGAGTACAGTCCTGAAAGAGAAAGCAAACAGGGAAATCGTCATGGTGTTGTTTTCGGGGCTAATGTAGATTTGCCAAATGAACTGCATAACCCCATTTTACCTCTACCCAGTGTGCTGCAAAGATCACAACAATATCAGCAACCTTCTTGTTCTTCATCAATG......................................................................................................................ATGAATATCTCATCAGGGATTTCATCATCATCTGTACTAAATTATCAGATGGAGCCCCCTTCAAACCAAAATTATTATTCGTGTAATTATTTACCTCTGTGGCCTGAAGATGTGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTGGCATGAAGAGACCATATCCCTTCACTCCAGAGTTTCCACCAGTCCCTACATTTCACTGCAAATTTCCTCCAGCCTATGTTAACCTTGCATCGAGATCACCTGAATCAGCTTCCTGCAGCAATGAATGTGCAGCCAGTTTAGAATCAGGAAATTTGCTCAAAAG................................................................................AGAAGCTCCTTCAGGATCAAGGACTCTATCCGAGTCCAAACCAAGGGATGTTATCAGGCAAAATAAAGCTCTCAATGGAGATTTTCTCACGTTGGCTCCTCCTACAGCCGCTTCTCCATATCAGCATTCATCTAATTCAAACCTTCAGAGTCTAGAGAGATTTAGATTGGAATCAGTGACTTGTCAG.................................................................................................GGAGTTGCTGAAGAACCTACTACAACAAGCTCAGCCCTAAGCAAATCAGTTCAACAATCCAATCTATGGATTCTTCCCAACTGCCAAGGTACAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0021L02-xwr9p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337259" ref_strand="+" ref_description="SGN-U337259        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: trans-sialidase(evalue: 2e-08, score=20.8)">
      <seq>cctttatacacaacaatatcagcaaccttcttgttcttcatctttgatgaatatctcatcagggatttcatcatcatctgtactaaattatcagatggagcccccttcaaaccataattattattcgtgtaattatttacctctgtggcctgaagatgtgaaggtaatttcttttattctgcgtgttagtcactaatatatagaaatcaattttcataatgctctcttctgtcaaaaggctgaaatacactttacctggatatcctattgattctagtaaggatcttagtttgtacagaaccgttatgtgaaatgttcttttaattataaagatggatacatgtcatttacatcctatgtgttgaacatctcttttcttcgaacttgatagtagaaaacattattacacaccttctactgccaaaacaaggtaaaggagcttctctttgtggccctaaactaatattcagatacttgatgaaaagagcatcttaaaagcgagaagagatgctcactcagctcatgttacaccctccactccccacaaattgtaggatagctccatagttgtccctttgttgctcaaacagttctctgtgttctttcatctaaacaagctatctgaggataatgacttaaaaaccaagagacttgtcacaatcacaattcacaaatgtgttacacatgtatgcaatcattatttcagtgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-xwr9p/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="79036" stop="77616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78741" g_stop="78697" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.822"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78696" i_stop="78579" i_length="118">
            <donor d_prob="0.995" d_score="0.82"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78578" g_stop="77916" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="710" r_length="664" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-U337259" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U337259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78741" e_stop="78697"/>
          <exon e_start="78578" e_stop="77916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGAT-CACAACAATATCAGCAACCTTCTTGTTCTTCATCAATGGTAAGCAAGTTTATTAATTTAGTTGCAATGTTATATATCATCGTTGGATTATCAAGTCTATAATTTTGTTTTGATGTGTTTGAAATGCTCTGATTATATCACTTTGTGGTAACTGCAGATGAATATCTCATCAGGGATTTCATCATCATCTGTACTAAATTATCAGATGGAGCCCCCTTCAAACCAAAATTATTATTCGTGTAATTATTTACCTCTGTGGCCTGAAGATGTGAAGGTAATTTCTTTTATTCTGCGTGTTAGTCACTAATATATAGAAATCAATTTTCATAATGCTCTCTTCTGTCAAAAGGCTGAAATACACTTTACCTGGATATCCTATTGATTCTAGTAAGGATCTTAGTTTGTACAGAACCGTTATGTGAAATGTTCTTTTAATTATAAAGATGGATACATGTCATTTACATCCAATGTGTTGAACATCTCTTTTCTTCGAACTTGATAGTAGAAAACATTATTACACACCTTCTACTGCCAAAACAAGGTAAAGGAGCTTCTCTTTGTGGCCCTAAACTAATATTCAGATACTTGATGAAAAGAGCATCTTAAAAGCGAGAAGAGATGCTCACTCAGCTCAGGTTACACCCTCCACTCCCCACAAATTGTAGGATAGCTCCATAGTTGTCCCTTTGTTGCTCAAACAGTTCTC-GTGTTCTTTCATCTAAACAAGCTATCTGAGGATAATGACTTAAAAACCAAGAGACATGTCACAATCACAATTCACAAATGTGTTACACATGTATGCAATCATTATTTCAGTGCG</genome_strand>
        <mrna_strand>CCTTTATACACAACAATATCAGCAACCTTCTTGTTCTTCATCTTTG......................................................................................................................ATGAATATCTCATCAGGGATTTCATCATCATCTGTACTAAATTATCAGATGGAGCCCCCTTCAAACCATAATTATTATTCGTGTAATTATTTACCTCTGTGGCCTGAAGATGTGAAGGTAATTTCTTTTATTCTGCGTGTTAGTCACTAATATATAGAAATCAATTTTCATAATGCTCTCTTCTGTCAAAAGGCTGAAATACACTTTACCTGGATATCCTATTGATTCTAGTAAGGATCTTAGTTTGTACAGAACCGTTATGTGAAATGTTCTTTTAATTATAAAGATGGATACATGTCATTTACATCCTATGTGTTGAACATCTCTTTTCTTCGAACTTGATAGTAGAAAACATTATTACACACCTTCTACTGCCAAAACAAGGTAAAGGAGCTTCTCTTTGTGGCCCTAAACTAATATTCAGATACTTGATGAAAAGAGCATCTTAAAAGCGAGAAGAGATGCTCACTCAGCTCATGTTACACCCTCCACTCCCCACAAATTGTAGGATAGCTCCATAGTTGTCCCTTTGTTGCTCAAACAGTTCTCTGTGTTCTTTCATCTAAACAAGCTATCTGAGGATAATGACTTAAAAACCAAGAGACTTGTCACAATCACAATTCACAAATGTGTTACACATGTATGCAATCATTATTTCAGTGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0021L02-xwr9p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337260" ref_strand="+" ref_description="SGN-U337260        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>aagatcacaacaatatcagcaaccttcttgttcttcatcaatgatgaatatctcatcagggatttcatcatcatctgtactaaattatcagatggagcccccttcaaaccaaaattattattcgtgtaattatttacctctgtggcctgaagatgtgaaggtaatttcttttattctgcgtgttagtcactaatatatagaaatcaattttcataatgctctcttctgtcaaaaggctgaaatacactttacctggatatcctattgattctagtaaggatcttagtttgtacagaaccgttatgtgaaatgttcttttaattataaagatggatacatgtcatttacatccaatgtgttgaacatctcttttcttcgaacttgatagtagaaaacattattacacaccttctactgccaaaacaaggtaaaggagcttctctttgtggccctaaactaatattcagatacttgatgaaaagagcatcttaaaagcgagaagagatgctcactcagctcaggttacaccctccactccccacaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-xwr9p/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="79039" stop="77776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78739" g_stop="78697" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78696" i_stop="78579" i_length="118">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78578" g_stop="78076" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="546" r_length="503" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-U337260" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U337260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78739" e_stop="78697"/>
          <exon e_start="78578" e_stop="78076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATCACAACAATATCAGCAACCTTCTTGTTCTTCATCAATGGTAAGCAAGTTTATTAATTTAGTTGCAATGTTATATATCATCGTTGGATTATCAAGTCTATAATTTTGTTTTGATGTGTTTGAAATGCTCTGATTATATCACTTTGTGGTAACTGCAGATGAATATCTCATCAGGGATTTCATCATCATCTGTACTAAATTATCAGATGGAGCCCCCTTCAAACCAAAATTATTATTCGTGTAATTATTTACCTCTGTGGCCTGAAGATGTGAAGGTAATTTCTTTTATTCTGCGTGTTAGTCACTAATATATAGAAATCAATTTTCATAATGCTCTCTTCTGTCAAAAGGCTGAAATACACTTTACCTGGATATCCTATTGATTCTAGTAAGGATCTTAGTTTGTACAGAACCGTTATGTGAAATGTTCTTTTAATTATAAAGATGGATACATGTCATTTACATCCAATGTGTTGAACATCTCTTTTCTTCGAACTTGATAGTAGAAAACATTATTACACACCTTCTACTGCCAAAACAAGGTAAAGGAGCTTCTCTTTGTGGCCCTAAACTAATATTCAGATACTTGATGAAAAGAGCATCTTAAAAGCGAGAAGAGATGCTCACTCAGCTCAGGTTACACCCTCCACTCCCCACAAAT</genome_strand>
        <mrna_strand>AAGATCACAACAATATCAGCAACCTTCTTGTTCTTCATCAATG......................................................................................................................ATGAATATCTCATCAGGGATTTCATCATCATCTGTACTAAATTATCAGATGGAGCCCCCTTCAAACCAAAATTATTATTCGTGTAATTATTTACCTCTGTGGCCTGAAGATGTGAAGGTAATTTCTTTTATTCTGCGTGTTAGTCACTAATATATAGAAATCAATTTTCATAATGCTCTCTTCTGTCAAAAGGCTGAAATACACTTTACCTGGATATCCTATTGATTCTAGTAAGGATCTTAGTTTGTACAGAACCGTTATGTGAAATGTTCTTTTAATTATAAAGATGGATACATGTCATTTACATCCAATGTGTTGAACATCTCTTTTCTTCGAACTTGATAGTAGAAAACATTATTACACACCTTCTACTGCCAAAACAAGGTAAAGGAGCTTCTCTTTGTGGCCCTAAACTAATATTCAGATACTTGATGAAAAGAGCATCTTAAAAGCGAGAAGAGATGCTCACTCAGCTCAGGTTACACCCTCCACTCCCCACAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0021L02-xwr9p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324434" ref_strand="+" ref_description="SGN-U324434        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | TCP family transcription factor, putative, similar to TCP3 GB:AAC24010 (Arabidopsis thaliana) | chr3:5062026-5064045 FORWARD | Aliases: None(evalue: 3e-24, score=109) genbank/nr: gi|37783285|gb|AAO43102.1| mutant cincinnata [Antirrhinum majus](evalue: 4e-33, score=145)">
      <seq>gttttatgcctcattctttagattctgatgcgatttctgataccatcaaatcatttttcccaatgggaggtagtggttcaaatgaaggtaattctttccagagttttcaacaacataatttgatgtcaagaagccaagatttgaagctttctttacaatcttttcaagatccacaagctcagtttgaagcatcaaatttctttactggatttgatgcttcagtgtggcctcagcaccagcagcagccggttgaacttggtcgactggcggctgctcgtggagacattggtggcggggcaattgctggagcaggtagttatctgtttaactctcagcctgccccgccgctattacaacaattgttcactcaaaatcagtttttgtctcagaggggaccccttcagtccagttactcaccttcgattcgtgcatggatagatccatcagcgattgctatcgccacagctgatccaattcaccaaaaccaaaaccatcatcaagctgtgtttcctatgtattcaacatcactttctggcatcggattcgcctcagaattaggcggattctctggctttcgcattcctacacgaatccaaggtgaaatagaggaggagcatgatggtgtttccgacaaaccatcctctgcttcctctgattctcgtcattgaatcagctcggaaacacaatctcccattataacctgacaggaacaagtactatatttgaagatggaaatgggaaaagacaagtcagggaaagcgcgataatccatttttatcgagtctgattcagtgagaatgcaccgcggaagaagaatcctgagcatagtttcaggtttttttctaagattaaatagcggtgtaatgttcatgtataagtgtgtttttctgttgctaagttgttgttgttgttgttgttgtgtgcttattatcttcagttcattagaacaagtaattttctcttgaatgacaattattatcaacctgattgatttggtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-xwr9p/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="96615" stop="94931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96315" g_stop="95609" g_length="707"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="707" r_length="707" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95608" i_stop="95528" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95527" g_stop="95238" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="708" r_stop="997" r_length="290" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="998" polyA_stop="1014"/>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-U324434" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>997</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U324434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96315" e_stop="95609"/>
          <exon e_start="95527" e_stop="95238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTATGCCTCATTCTTTAGATTCTGATGCGATTTCTGATACCATCAAATCATTTTTCCCAATGGGAGGTAGTGGTTCAAATGAAGGTAATTCTTTCCAGAGTTTTCAACAACATAATTTGATGTCAAGAAGCCAAGATTTGAAGCTTTCTTTACAATCTTTTCAAGATCCACAAGCTCAGTTTGAAGCATCAAATTTCTTTACTGGATTTGATGCTTCAGTGTGGCCTCAGCACCAGCAGCAGCCGGTTGAACTTGGTCGACTGGCGGCTGCTCGTGGAGACATTGGTGGCGGGGCAATTGCTGGAGCAGGTAGTTATCTGTTTAACTCTCAGCCTGCCCCGCCGCTATTACAACAATTGTTCACTCAAAATCAGTTTTTGTCTCAGAGGGGACCCCTTCAGTCCAGTTACTCACCTTCGATTCGTGCATGGATAGATCCATCAGCGATTGCTATCGCCACAGCTGATCCAATTCACCAAAACCAAAACCATCATCAAGCTGTGTTTCCTATGTATTCAACATCACTTTCTGGCATCGGATTCGCCTCAGAATTAGGCGGATTCTCTGGCTTTCGCATTCCTACACGAATCCAAGGTGAAATAGAGGAGGAGCATGATGGTGTTTCCGACAAACCATCCTCTGCTTCCTCTGATTCTCGTCATTGAATCAGCTCGGAAACACAATCTCCCATTATAACCTGACAGGTAATTAAATCAATTCACCATTTCAAATTCCATTGTATTCTACCAGCATTAGTTTACTGTTACATTGACCTTAATTTTCAGGAACAAGTACTATATTTGAAGATGGAAATGGGAAAAGACAAGTCAGGGAAAGCGCGATAATCCATTTTTATCGAGTCTGATTCAGTGAGAATGCACCGCGGAAGAAGAATCCTGAGCATAGTTTCAGGTTTTTTTCTAAGATTAAATAGCGGTGTAATGTTCATGTATAAGTGTGTTTTTCTGTTGCTAAGTTGTTGTTGTTGTTGTTGTTGTGTGCTTATTATCTTCAGTTCATTAGAACAAGTAATTTTCTCTTGAATGACAATTATTATCAACCTGATTGATTTGGT</genome_strand>
        <mrna_strand>GTTTTATGCCTCATTCTTTAGATTCTGATGCGATTTCTGATACCATCAAATCATTTTTCCCAATGGGAGGTAGTGGTTCAAATGAAGGTAATTCTTTCCAGAGTTTTCAACAACATAATTTGATGTCAAGAAGCCAAGATTTGAAGCTTTCTTTACAATCTTTTCAAGATCCACAAGCTCAGTTTGAAGCATCAAATTTCTTTACTGGATTTGATGCTTCAGTGTGGCCTCAGCACCAGCAGCAGCCGGTTGAACTTGGTCGACTGGCGGCTGCTCGTGGAGACATTGGTGGCGGGGCAATTGCTGGAGCAGGTAGTTATCTGTTTAACTCTCAGCCTGCCCCGCCGCTATTACAACAATTGTTCACTCAAAATCAGTTTTTGTCTCAGAGGGGACCCCTTCAGTCCAGTTACTCACCTTCGATTCGTGCATGGATAGATCCATCAGCGATTGCTATCGCCACAGCTGATCCAATTCACCAAAACCAAAACCATCATCAAGCTGTGTTTCCTATGTATTCAACATCACTTTCTGGCATCGGATTCGCCTCAGAATTAGGCGGATTCTCTGGCTTTCGCATTCCTACACGAATCCAAGGTGAAATAGAGGAGGAGCATGATGGTGTTTCCGACAAACCATCCTCTGCTTCCTCTGATTCTCGTCATTGAATCAGCTCGGAAACACAATCTCCCATTATAACCTGACAG.................................................................................GAACAAGTACTATATTTGAAGATGGAAATGGGAAAAGACAAGTCAGGGAAAGCGCGATAATCCATTTTTATCGAGTCTGATTCAGTGAGAATGCACCGCGGAAGAAGAATCCTGAGCATAGTTTCAGGTTTTTTTCTAAGATTAAATAGCGGTGTAATGTTCATGTATAAGTGTGTTTTTCTGTTGCTAAGTTGTTGTTGTTGTTGTTGTTGTGTGCTTATTATCTTCAGTTCATTAGAACAAGTAATTTTCTCTTGAATGACAATTATTATCAACCTGATTGATTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0021L02-xwr9p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331960" ref_strand="+" ref_description="SGN-U331960        Tomato 200607 #1 [2 ESTs aligned] genbank/nr: gi|47824994|gb|AAT38766.1| putative polyprotein [Solanum demissum] (evalue: 5e-40, score=165)">
      <seq>gatagtaaaactgttggatcacaagtgcaggaacttcaacttattctccatgatctgattgctgaagatatggtggtaaatgaagcttttcaagtggctgcaatgatcgagaagttgcctccttggtggaatgatttcaagaattatctaaagcacaagcgtaaagtaatgaagcttgaagatcttgtgattcatctcaagattgaggaagataacagaaatgccgaaaagaagtcgcgtaagagttcaacaatcattggagttaatattgttgaagaagctcttaccaaagacaaaaagtgaaagaagtccaacgggcagaagtcagaacaggccaagaagaaattcaaaggcaactcttataattgtggcaaggctggtcatagatcttctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-xwr9p/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="-" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="108712" stop="107732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108387" g_stop="108032" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="395" r_length="356" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="-" ref_id="SGN-U331960" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U331960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108387" e_stop="108032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTCTCCATGATCTGATTGCTGAAGATATGGTAGTAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTGCCTCCTTCGTGGAACGATTTCAAGAATTATCTAAAGCATAAGCGTAAAGAAATGAAGCTTGAAGATCTTGTGATTCGTCTCAAGATTGAGGAAGATAACAAAAATGCCAAAAAAAAGTTGCGTAAGAGTTCAACAATCATTGGAGTTAATATTGCTGAAGATGATCCTACCAAAGACAAAAAGAAAAAAAAGTCCAACGGGTAGAAGTCAGAATAGGCCAAGAAGAAATTCAAAGGCAACTGTTATAATTGTGGCAAGGCTGGTCATAGGTCTTCTGA</genome_strand>
        <mrna_strand>CTTATTCTCCATGATCTGATTGCTGAAGATATGGTGGTAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTGCCTCCTTGGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGTAATGAAGCTTGAAGATCTTGTGATTCATCTCAAGATTGAGGAAGATAACAGAAATGCCGAAAAGAAGTCGCGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCTTACCAAAGACAAAAAGTGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTCTTATAATTGTGGCAAGGCTGGTCATAGATCTTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0021L02-xwr9p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330938" ref_strand="+" ref_description="SGN-U330938        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:27515331-27518458 REVERSE | Aliases: T18K17.17, T18K17_17(evalue: 2e-42, score=168) genbank/nr: gi|18086459|gb|AAL57683.1| At1g73170/T18K17_17 [Arabidopsis thaliana](evalue: 1e-40, score=168)">
      <seq>agcaatgctctctttcgctttagtccatcttcatccttcttcttccccaaacccacagttccattttccccacaaaaatcaaattctgccaattcaatcactcaacttttcaccatttactgtaatacccacaaaattgctgagtaaaccctccttctcccgcttattatcttcggtatcgtcgtcttctttggttgctgatgactttcaagtggaattgggtcggttattgtctttgttgccggaggaaatgcggcgaggagttagcgaacacccggaatattccaatttaattgaggtggttatggacttaggtcgtaagccacttgctcgcttcccttctggagatttcatcttatccgatcaaccgattactttgggtgatcttcaacaagctacctcgcaggttggtgactttgcagttgacaatagagctggcattagcagaactttacaccgaattagtgctattagaaatcggaaaggtgcaattattggtttaacttgtcgagttggtcgtgcaatatctggaagtgcaaactcattgcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0021L02-xwr9p/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0021L02.1" temp_strand="+" temp_description="C12HBa0021L02.1  AC209584.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0021L02 upload_account_name:italy">
        <position start="124766" stop="127431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125066" g_stop="125471" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125472" i_stop="126986" i_length="1515">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126987" g_stop="127131" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="551" r_length="145" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0021L02.1" gen_strand="+" ref_id="SGN-U330938" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0021L02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U330938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125066" e_stop="125471"/>
          <exon e_start="126987" e_stop="127131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATGCTCTCTTTCGCTTTAGTCCATCTTCATCCTTCTTCTTCCCCAAACCCACAGTTCCATTTTCCCCACAAAAATCAAATTCTGCCAATTCAATCACTCAACTTTTCACCATTTACTGTAATACCCACAAAATTGCTGAGTAAACCCTCCTTCTCCCGCTTATTATCTTCGGTATCGTCGTCTTCTTTGGTTGCTGATGACTTTCAAGTGGAATTGGGTCGGTTATTGTCTTTGTTGCCGGAGGAAATGCGGCGAGGAGTTAGCGAACACCCGGAATATTCCAATTTAATTGAGGTGGTTATGGACTTAGGTCGTAAGCCACTTGCTCGCTTCCCTTCTGGAGATTTCATCTTATCCGATCAACCGATTACTTTGGGTGATCTTCAACAAGCTACCTCGCAGGTTAGAATTAATTAAATGCAGCACCCATTTCACCTTGAGATATATGTGTGTATATATACATGAGCAGAGGTAGGGTATCAGAAGGGGATTCGAAACCCTTAATTGTAAAATTACACTATATATATAAAAGATTATAGTAAATCTTGAATTTTTGTAGTAAGAATTCTAACTCTACCACTTATTCTGTATACATGGTTATAGAATAGGCATTATACATAAACATACCTTTAACTTGGCTTCATCGAACAAATATGACTTTTAACTTAGGGTGTACAACTGTACACTTAAACTCATATAAAATTGAATAAATAAACACATTCATTCTGAATGAAGTCCTACGTGGTGATTTTGTATCATGTGGCGTCCTATGTGTATTATGCCACGTAGGACGTATGTGTCTACTCGTTCAATTCCATTCATGTATTATGCCTACATGATATGTTGAATGATCTTCGTGAAAGTTATGACTTTACCACTGACTATATACAAGGTTATAATAAATGTTGAATTCCTTTAATGAAGATTTTAGGTCCCCCAATTACTATATACGTGGTTATAGTATATGTTGAATCTGTTTAGTGAGATTTCTGACTCTACCAATTATTATATACAAGGTTATAGTAAATGTTCAATCCATTTAGTGAAAATTCTGACTCTACCACTTGCTATATGCAAGGTTATAGTAAGTGTTTAATGCGCTTAATGAAAATTCTGGGTACACCACTTACTATATACAAGGTTATAATAGATGTTTAATGTTCTTATTGAAAAATCTGGCTCCAGCACTTACTATGTAATACTCACTCTGTCTCAATTTATCAATTTATGTGATGCACTTTTAACTGGAAGTTTAAGGAAGAAAGAAAGACAACACTTCTAGATTGTGGTAAATAACAAACCATAAGTGTGTGTATATATATATATATATATATATATTTCATCAAGTGTAAAATGTGAAGTTTATTGTTAGGTTGTTTTTAATTATAGAAAGGTAATTCTTTTTGGACAGACTTCAAGAATAAATGCATCACATAAGTTGGGGAGAAAGTAGAACGATTTGAAAAATAACATATACTTGCACTAAGTTTCTATCTAGATGAATCGTGAGTGTGCTGATACTTGATACTTACCATCCATGAATTTCAAATCCTAGATTGCTTTTACCTCTAGGAATAATTTGAACTGAAGTTGCAGTGATAGCTTCAATTGAATTAGGAAGGCTTTGATTTTGATCAGGGTCGGCCTTTGCCAACTCCTTTACACACGCACACTTAACGTTGATTAAGTGGAAATTTTGAGGTTGTGCCCAATTGATTAGCAAGTTCCTTTTTTGTGGTTGGTGTTTCAGTGATATGCTCAAAGACACTAGTGATTTAGTTTCAGACTGAATAGTAACTATGACCCTGGAAATACACTAACATAGTCGTTGATAACAACTTACCTACGTCCAAAGCGAAAAGTTAGTACTAGTAACGATTTAGTTAGTACTGTGTTTAATGGTTATTCATATTACAGGTTGGTGACTTTGCAGTTGACAATAGAGCTGGCATTAGCAGAACTTTACACCGAATTAGTGCTATTAGAAATCGGAAAGGTGCAATTATTGGTTTAACTTGTCGAGTTGGTCGTGCAATATCTGGAAGTGCAAACTCATTGCGAG</genome_strand>
        <mrna_strand>AGCAATGCTCTCTTTCGCTTTAGTCCATCTTCATCCTTCTTCTTCCCCAAACCCACAGTTCCATTTTCCCCACAAAAATCAAATTCTGCCAATTCAATCACTCAACTTTTCACCATTTACTGTAATACCCACAAAATTGCTGAGTAAACCCTCCTTCTCCCGCTTATTATCTTCGGTATCGTCGTCTTCTTTGGTTGCTGATGACTTTCAAGTGGAATTGGGTCGGTTATTGTCTTTGTTGCCGGAGGAAATGCGGCGAGGAGTTAGCGAACACCCGGAATATTCCAATTTAATTGAGGTGGTTATGGACTTAGGTCGTAAGCCACTTGCTCGCTTCCCTTCTGGAGATTTCATCTTATCCGATCAACCGATTACTTTGGGTGATCTTCAACAAGCTACCTCGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTGACTTTGCAGTTGACAATAGAGCTGGCATTAGCAGAACTTTACACCGAATTAGTGCTATTAGAAATCGGAAAGGTGCAATTATTGGTTTAACTTGTCGAGTTGGTCGTGCAATATCTGGAAGTGCAAACTCATTGCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>20</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="1141" PGL_stop="1"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1141" e_stop="1"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="1141" e_stop="1" e_length="1141"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1141" stop="1"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326806" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAGAAAATGCAAAGTAGTATGAGAAGCTCAAGAAGGCATGTGTTTGAAGGTATTGAGTTCAAGGATCATGACGATGAGAGTGTTGAAATGAAGGAAGAGAAAGGTAGAGTTAGCATTTGCATTCCACCTAAAAATGCTTTGCTTCTTATGAGATGTCGATCTGATCCTATGAAAATGGCGGATATTGCTAATCGATTCTGGGAATCACCTGCTCGGGAAGAAACTAATGAGAAAGAAATCGGAGAAAATGCGGAGGTGAAAGAAGTAGAAGATACAGAAAACACTGAATGCAATGTACTACAGGAAACTAGTGTTTCTGTAGATCTGGTAGAAAATGAAGAAGCAGTAGAAGTCACAGATAGTAGTAAGGATGAAGAAAAGCTCAAATGCGATGAATTAACGCCAGAAACAGAGGAACAAGATGAAGAAGACAGTGAGATGAAGGGACTTGTAGCAGTAGCTGCAGTAGAAGTAAACTCCATTGTTGATCAACTCCTTGAATCAGAGAAAAAAGAAGAAGAAGAAGACAGCAGCATTCAGAGTTTTTCATCTTTCTCAGAAAACGAAGAAGATGAAACATTGGAAGAAGAAGAGAGGTTCAAATCAATTATTAAGAAGGTGATCGAAGAAACACTCTTGTTAGAACACATTGATAGAGAAGATGCAAAACAAATTCAACACGAACACAAACACGAAGAAGAAGCAAAATCTGATGCAGTATTTTCAAACAATGAAAACGAAAAAGAATCGAGAAAACAACAGAACGAATCAATTCTTCCAGATTGCTTGCTTCTAATGATGTGTGAGCCCAAGCTATCCATGGAGGTTTCTAAGGAAACATGGGTATACAGCAGCACCGAAGTAAAACAAGCTAAAACAGTGACGACAAAGAAGAAGAAGAATGAAATTCCCGAGGATCCAAAGAGAAGGCGAAGCATTGACAAGAGTAAACAACAACATCTCCTCCTCCAACCACCAAGGTCATCGTGTTCTTTCCCGGCGACCGGAGTTTCGCCGGCGATATCCATGGCAACGATGATAGAGCAGAAACTGGTAAACGCAGTGGCTTACGAGCCGTTAGTGTTGACAAGGTGCAAGTCGGAGCCGATGAGGACGGTGGCGGGGGGGACGGCTAAGCTT</gDNA_template>
            <first_frame> R  E  N  A  K  *  Y  E  K  L  K  K  A  C  V  *  R  Y  *  V  Q  G  S  *  R  *  E  C  *  N  E  G  R  E  R  *  S  *  H  L  H  S  T  *  K  C  F  A  S  Y  E  M  S  I  *  S  Y  E  N  G  G  Y  C  *  S  I  L  G  I  T  C  S  G  R  N  *  *  E  R  N  R  R  K  C  G  G  E  R  S  R  R  Y  R  K  H  *  M  Q  C  T  T  G  N  *  C  F  C  R  S  G  R  K  *  R  S  S  R  S  H  R  *  *  *  G  *  R  K  A  Q  M  R  *  I  N  A  R  N  R  G  T  R  *  R  R  Q  *  D  E  G  T  C  S  S  S  C  S  R  S  K  L  H  C  *  S  T  P  *  I  R  E  K  R  R  R  R  R  Q  Q  H  S  E  F  F  I  F  L  R  K  R  R  R  *  N  I  G  R  R  R  E  V  Q  I  N  Y  *  E  G  D  R  R  N  T  L  V  R  T  H  *  *  R  R  C  K  T  N  S  T  R  T  Q  T  R  R  R  S  K  I  *  C  S  I  F  K  Q  *  K  R  K  R  I  E  K  T  T  E  R  I  N  S  S  R  L  L  A  S  N  D  V  *  A  Q  A  I  H  G  G  F  *  G  N  M  G  I  Q  Q  H  R  S  K  T  S  *  N  S  D  D  K  E  E  E  E  *  N  S  R  G  S  K  E  K  A  K  H  *  Q  E  *  T  T  T  S  P  P  P  T  T  K  V  I  V  F  F  P  G  D  R  S  F  A  G  D  I  H  G  N  D  D  R  A  E  T  G  K  R  S  G  L  R  A  V  S  V  D  K  V  Q  V  G  A  D  E  D  G  G  G  G  D  G  *  A  </first_frame>
            <second_frame>  E  K  M  Q  S  S  M  R  S  S  R  R  H  V  F  E  G  I  E  F  K  D  H  D  D  E  S  V  E  M  K  E  E  K  G  R  V  S  I  C  I  P  P  K  N  A  L  L  L  M  R  C  R  S  D  P  M  K  M  A  D  I  A  N  R  F  W  E  S  P  A  R  E  E  T  N  E  K  E  I  G  E  N  A  E  V  K  E  V  E  D  T  E  N  T  E  C  N  V  L  Q  E  T  S  V  S  V  D  L  V  E  N  E  E  A  V  E  V  T  D  S  S  K  D  E  E  K  L  K  C  D  E  L  T  P  E  T  E  E  Q  D  E  E  D  S  E  M  K  G  L  V  A  V  A  A  V  E  V  N  S  I  V  D  Q  L  L  E  S  E  K  K  E  E  E  E  D  S  S  I  Q  S  F  S  S  F  S  E  N  E  E  D  E  T  L  E  E  E  E  R  F  K  S  I  I  K  K  V  I  E  E  T  L  L  L  E  H  I  D  R  E  D  A  K  Q  I  Q  H  E  H  K  H  E  E  E  A  K  S  D  A  V  F  S  N  N  E  N  E  K  E  S  R  K  Q  Q  N  E  S  I  L  P  D  C  L  L  L  M  M  C  E  P  K  L  S  M  E  V  S  K  E  T  W  V  Y  S  S  T  E  V  K  Q  A  K  T  V  T  T  K  K  K  K  N  E  I  P  E  D  P  K  R  R  R  S  I  D  K  S  K  Q  Q  H  L  L  L  Q  P  P  R  S  S  C  S  F  P  A  T  G  V  S  P  A  I  S  M  A  T  M  I  E  Q  K  L  V  N  A  V  A  Y  E  P  L  V  L  T  R  C  K  S  E  P  M  R  T  V  A  G  G  T  A  K  L </second_frame>
            <third_frame>   R  K  C  K  V  V  *  E  A  Q  E  G  M  C  L  K  V  L  S  S  R  I  M  T  M  R  V  L  K  *  R  K  R  K  V  E  L  A  F  A  F  H  L  K  M  L  C  F  L  *  D  V  D  L  I  L  *  K  W  R  I  L  L  I  D  S  G  N  H  L  L  G  K  K  L  M  R  K  K  S  E  K  M  R  R  *  K  K  *  K  I  Q  K  T  L  N  A  M  Y  Y  R  K  L  V  F  L  *  I  W  *  K  M  K  K  Q  *  K  S  Q  I  V  V  R  M  K  K  S  S  N  A  M  N  *  R  Q  K  Q  R  N  K  M  K  K  T  V  R  *  R  D  L  *  Q  *  L  Q  *  K  *  T  P  L  L  I  N  S  L  N  Q  R  K  K  K  K  K  K  T  A  A  F  R  V  F  H  L  S  Q  K  T  K  K  M  K  H  W  K  K  K  R  G  S  N  Q  L  L  R  R  *  S  K  K  H  S  C  *  N  T  L  I  E  K  M  Q  N  K  F  N  T  N  T  N  T  K  K  K  Q  N  L  M  Q  Y  F  Q  T  M  K  T  K  K  N  R  E  N  N  R  T  N  Q  F  F  Q  I  A  C  F  *  *  C  V  S  P  S  Y  P  W  R  F  L  R  K  H  G  Y  T  A  A  P  K  *  N  K  L  K  Q  *  R  Q  R  R  R  R  M  K  F  P  R  I  Q  R  E  G  E  A  L  T  R  V  N  N  N  I  S  S  S  N  H  Q  G  H  R  V  L  S  R  R  P  E  F  R  R  R  Y  P  W  Q  R  *  *  S  R  N  W  *  T  Q  W  L  T  S  R  *  C  *  Q  G  A  S  R  S  R  *  G  R  W  R  G  G  R  L  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1140" stop="1"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1140</number_coding_nucleotides>
                  <number_encoded_amino_acids>380</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKMQSSMRSSRRHVFEGIEFKDHDDESVEMKEEKGRVSICIPPKNALLLMRCRSDPMKMADIANRFWESPAREETNEKEIGENAEVKEVEDTENTECNVLQETSVSVDLVENEEAVEVTDSSKDEEKLKCDELTPETEEQDEEDSEMKGLVAVAAVEVNSIVDQLLESEKKEEEEDSSIQSFSSFSENEEDETLEEEERFKSIIKKVIEETLLLEHIDREDAKQIQHEHKHEEEAKSDAVFSNNENEKESRKQQNESILPDCLLLMMCEPKLSMEVSKETWVYSSTEVKQAKTVTTKKKKNEIPEDPKRRRSIDKSKQQHLLLQPPRSSCSFPATGVSPAISMATMIEQKLVNAVAYEPLVLTRCKSEPMRTVAGGTAKL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="1937" PGL_stop="1221"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1937" e_stop="1221"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="1937" e_stop="1221" e_length="717"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1937" stop="1221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345485" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAAACACAGCTTCTCTACACTTACAGACCCCCAAATCCATGGCTACCTACAACAGCAATACCAAGAAACCATTATCACATTACTGAAAACTCCTTCATCTCTTCTTTTTTGTATACTTTCTTCTTCAAATGAAACTCACCAAATCCATCCTTAGTCCTAGCCATGCTCGGCATGACCCACCTCTTACTCTTCCCACTTCTCTCAGTCGGAAGCTTAAAGCTAATGGCAGTATTAAAGGCGGACAATCCCCAGCTACGTTTCCTACTACCACCGGAAAGAAACGAGGGTCGAGTTTTGATAACCCGGAACCTTCGTCTCCGAAGGTGACTTGTATTGGTCAGGTGAAAATGAAGACGAAGAAGAAAGTTAGGCAAACACGGAATTTGTCTAATAGAAGGAGTGATATAAGTTTCAGGAAGTTGGAAGAAGAAAAAAGGGGAGTTTTGATTCAGAATCAGAGGAGTTCTAGTGTGCATTTGCAGGCGCAAGATCAATGTGCGGTGGCGCATAGAAATCAGAGATGGGTACATTTGCCAGTAACGATATATGAAGCTTTGAGAGAGTTTAGCTGTTTGTTTCCATGTCGGTCTTCGTGTTTTTCGAATGAGAAAGGAAAACAACAAGATAAAGTTAATGGATCTAGAGATGTTGATAATAATAATGGGCAGAGGAGATGTGAGGATGTTGTTGCTAGATGGCTAGTTGCATTACAAG</gDNA_template>
            <first_frame> K  K  T  Q  L  L  Y  T  Y  R  P  P  N  P  W  L  P  T  T  A  I  P  R  N  H  Y  H  I  T  E  N  S  F  I  S  S  F  L  Y  T  F  F  F  K  *  N  S  P  N  P  S  L  V  L  A  M  L  G  M  T  H  L  L  L  F  P  L  L  S  V  G  S  L  K  L  M  A  V  L  K  A  D  N  P  Q  L  R  F  L  L  P  P  E  R  N  E  G  R  V  L  I  T  R  N  L  R  L  R  R  *  L  V  L  V  R  *  K  *  R  R  R  R  K  L  G  K  H  G  I  C  L  I  E  G  V  I  *  V  S  G  S  W  K  K  K  K  G  E  F  *  F  R  I  R  G  V  L  V  C  I  C  R  R  K  I  N  V  R  W  R  I  E  I  R  D  G  Y  I  C  Q  *  R  Y  M  K  L  *  E  S  L  A  V  C  F  H  V  G  L  R  V  F  R  M  R  K  E  N  N  K  I  K  L  M  D  L  E  M  L  I  I  I  M  G  R  G  D  V  R  M  L  L  L  D  G  *  L  H  Y  K </first_frame>
            <second_frame>  K  K  H  S  F  S  T  L  T  D  P  Q  I  H  G  Y  L  Q  Q  Q  Y  Q  E  T  I  I  T  L  L  K  T  P  S  S  L  L  F  C  I  L  S  S  S  N  E  T  H  Q  I  H  P  *  S  *  P  C  S  A  *  P  T  S  Y  S  S  H  F  S  Q  S  E  A  *  S  *  W  Q  Y  *  R  R  T  I  P  S  Y  V  S  Y  Y  H  R  K  E  T  R  V  E  F  *  *  P  G  T  F  V  S  E  G  D  L  Y  W  S  G  E  N  E  D  E  E  E  S  *  A  N  T  E  F  V  *  *  K  E  *  Y  K  F  Q  E  V  G  R  R  K  K  G  S  F  D  S  E  S  E  E  F  *  C  A  F  A  G  A  R  S  M  C  G  G  A  *  K  S  E  M  G  T  F  A  S  N  D  I  *  S  F  E  R  V  *  L  F  V  S  M  S  V  F  V  F  F  E  *  E  R  K  T  T  R  *  S  *  W  I  *  R  C  *  *  *  *  W  A  E  E  M  *  G  C  C  C  *  M  A  S  C  I  T   </second_frame>
            <third_frame>   K  N  T  A  S  L  H  L  Q  T  P  K  S  M  A  T  Y  N  S  N  T  K  K  P  L  S  H  Y  *  K  L  L  H  L  F  F  F  V  Y  F  L  L  Q  M  K  L  T  K  S  I  L  S  P  S  H  A  R  H  D  P  P  L  T  L  P  T  S  L  S  R  K  L  K  A  N  G  S  I  K  G  G  Q  S  P  A  T  F  P  T  T  T  G  K  K  R  G  S  S  F  D  N  P  E  P  S  S  P  K  V  T  C  I  G  Q  V  K  M  K  T  K  K  K  V  R  Q  T  R  N  L  S  N  R  R  S  D  I  S  F  R  K  L  E  E  E  K  R  G  V  L  I  Q  N  Q  R  S  S  S  V  H  L  Q  A  Q  D  Q  C  A  V  A  H  R  N  Q  R  W  V  H  L  P  V  T  I  Y  E  A  L  R  E  F  S  C  L  F  P  C  R  S  S  C  F  S  N  E  K  G  K  Q  Q  D  K  V  N  G  S  R  D  V  D  N  N  N  G  Q  R  R  C  E  D  V  V  A  R  W  L  V  A  L  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1848" stop="1222"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>627</number_coding_nucleotides>
                  <number_encoded_amino_acids>209</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLLHLFFFVYFLLQMKLTKSILSPSHARHDPPLTLPTSLSRKLKANGSIKGGQSPATFPTTTGKKRGSSFDNPEPSSPKVTCIGQVKMKTKKKVRQTRNLSNRRSDISFRKLEEEKRGVLIQNQRSSSVHLQAQDQCAVAHRNQRWVHLPVTIYEALREFSCLFPCRSSCFSNEKGKQQDKVNGSRDVDNNNGQRRCEDVVARWLVALQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="12320" PGL_stop="5391"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12320" e_stop="12007"/>
            <exon e_start="10578" e_stop="10351"/>
            <exon e_start="10034" e_stop="9961"/>
            <exon e_start="8445" e_stop="8286"/>
            <exon e_start="8138" e_stop="8019"/>
            <exon e_start="7908" e_stop="7800"/>
            <exon e_start="6081" e_stop="5391"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.868" acc_prob="0.975" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12320" e_stop="12007" e_length="314"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.933">
            <gDNA_intron_boundary i_start="12006" i_stop="10579" i_length="1428"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10578" e_stop="10351" e_length="228"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.994">
            <gDNA_intron_boundary i_start="10350" i_stop="10035" i_length="316"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="10034" e_stop="9961" e_length="74"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="9960" i_stop="8446" i_length="1515"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="8445" e_stop="8286" e_length="160"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="8285" i_stop="8139" i_length="147"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="8138" e_stop="8019" e_length="120"/>
          </exon>
          <intron i_serial="5" don_prob="0.985" acc_prob="0.952">
            <gDNA_intron_boundary i_start="8018" i_stop="7909" i_length="110"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="7908" e_stop="7800" e_length="109"/>
          </exon>
          <intron i_serial="6" don_prob="0.868" acc_prob="0.975">
            <gDNA_intron_boundary i_start="7799" i_stop="6082" i_length="1718"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="6081" e_stop="5391" e_length="691"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12320" stop="12007"/>
              <exon start="10578" stop="10351"/>
              <exon start="10034" stop="9961"/>
              <exon start="8445" stop="8286"/>
              <exon start="8138" stop="8019"/>
              <exon start="7908" stop="7800"/>
              <exon start="6081" stop="5391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320664" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACACTCTTTCACTGAACCATTCAACAATATGCATCCATTTTCCCCAAATCACTGAATTTGCTGCTCAATTTCTTTGCAAAACAATGATCCGATTGAGATATCGGAGGATTGAGATTGGTACTGGTGATGGAGGAATTTCGAATTTAGGTTTTGGCAAAAGAGGTATTGTTACAAGCTGTAGAGCTGTGTTGTTGCCGCGATTTGGTGGACCGGAGATGCTTGAGTTTCGTGACAATGTATCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCGCTTGATACCAGA : ATGCGATCAGGCTATGGACGTTCAATTTTTGAACCACTTCTACCATTGATTTTGGGCCGAGATATAAGTGGTGAAGTTGCAGCTGTTGGAAATTCTGTCAAGTCACTTACAGTTGGGCAGGATGTATTTGGTGCTCTGCATCCAACCGCTGTGAGGGGTACTTATACTGACTATGCTATTCTTGCGGAAGATGAACTTGCTCCAAAGCCGGGATCACTTTCACATGTG : GAAGCCAGTGCTATCCCTTTTGCTGCTCTAACTGCTTGGCGTGCGCTAAAAAGTACTGCCAGAATAAGAGAGGG : GCATAGGGTATTGGTCATAGGTGGAGGAGGAGCAGTAGGTTTCTCTGCAATTCAGCTTGCTGTGGCTGCAGGCTGCCATGTTTCTACTACGTGTGGAGGAGAGAGTATAAGTCGCATTTTAGCAGCCGGTGCTGAGCAGGCCATTGACTATACCAGTGAG : GATGCTGAAGTAGCACTTAAGGGGCATTTTGATGCTGTCTTGGATACAATTGGTGTGCCAGATACAGAGAGAATGGGCATTAGCCTTTTAAAGAAAGGTGGACACTACATGACGTTACAG : GGGGAGGCTGCATCGGTGACTGATAGGCATGGACTAGCTATTGGTCTTCCTATGGCAGCAGCCATCTTGCTGAAGAAGCAAATCCAATATCGATATTCTCATGGAATAG : AATATTGGTGGAATTATATGAGGGCTGATGCTGAGGGTTTACATGAGATACGCCGGTTATCTGAGGCTGGGAAGCTTCAACTCCCAGTAGATAAAACTTTCCCAATTTCACAGGTGAGAGAGGCTCACGAGGCCAAGGATAGACGACAAATTCCTGGCAAAGTGGTGCTAGAAATTGACTGATTTAACTGGACGATCTTAACCAACAGTGCGTGGATTCAGTGCACAAGTCTATAATATCTCATGCAATCTGGTATTACACTGAATCCTTGATGCCTATTGCCTCGTATACGATATCATCTCTTTGCAGAATAACCAGACCCAACTTACACTCTGTTGGCATCTATAGGAAGAAAACTGTGCAACCTGTAAATTCTCAGGACATTCTCAATCTTTTTTCTTTTCTTCCAAGTATCCGTCATTGTTTCTATGTTGCGTTAAACATTTAAGTGAGCCATTTATCGTGCTCGTGACAGGAAAATGCATTGCGAATGGTCGTACTATGTCACAGGGGAGATGTCTGTTATTTTTTAGAAAAAAAAGAAATAGATAATTATGTTCTGAATTTGGTTGCAATTTTCAAATTTACTTACTGGTGAATTAAGGGTGATTGCTAAATATCCAAGTATGTGTATAATTTGTCTATTTCTAAAATTGATTAGATCTAAATTTAACAAAAGTAAATTATATAT</gDNA_template>
            <first_frame> T  L  F  H  *  T  I  Q  Q  Y  A  S  I  F  P  K  S  L  N  L  L  L  N  F  F  A  K  Q  *  S  D  *  D  I  G  G  L  R  L  V  L  V  M  E  E  F  R  I  *  V  L  A  K  E  V  L  L  Q  A  V  E  L  C  C  C  R  D  L  V  D  R  R  C  L  S  F  V  T  M  Y  L  F  L  I  *  N  L  I  K  C  L  F  V  L  V  L  F  Q  S  I  R  L  I  P  E :   C  D  Q  A  M  D  V  Q  F  L  N  H  F  Y  H  *  F  W  A  E  I  *  V  V  K  L  Q  L  L  E  I  L  S  S  H  L  Q  L  G  R  M  Y  L  V  L  C  I  Q  P  L  *  G  V  L  I  L  T  M  L  F  L  R  K  M  N  L  L  Q  S  R  D  H  F  H  M  W :   K  P  V  L  S  L  L  L  L  *  L  L  G  V  R  *  K  V  L  P  E  *  E  R   : G  I  G  Y  W  S  *  V  E  E  E  Q  *  V  S  L  Q  F  S  L  L  W  L  Q  A  A  M  F  L  L  R  V  E  E  R  V  *  V  A  F  *  Q  P  V  L  S  R  P  L  T  I  P  V  R :   M  L  K  *  H  L  R  G  I  L  M  L  S  W  I  Q  L  V  C  Q  I  Q  R  E  W  A  L  A  F  *  R  K  V  D  T  T  *  R  Y  R :   G  R  L  H  R  *  L  I  G  M  D  *  L  L  V  F  L  W  Q  Q  P  S  C  *  R  S  K  S  N  I  D  I  L  M  E  *  :  N  I  G  G  I  I  *  G  L  M  L  R  V  Y  M  R  Y  A  G  Y  L  R  L  G  S  F  N  S  Q  *  I  K  L  S  Q  F  H  R  *  E  R  L  T  R  P  R  I  D  D  K  F  L  A  K  W  C  *  K  L  T  D  L  T  G  R  S  *  P  T  V  R  G  F  S  A  Q  V  Y  N  I  S  C  N  L  V  L  H  *  I  L  D  A  Y  C  L  V  Y  D  I  I  S  L  Q  N  N  Q  T  Q  L  T  L  C  W  H  L  *  E  E  N  C  A  T  C  K  F  S  G  H  S  Q  S  F  F  F  S  S  K  Y  P  S  L  F  L  C  C  V  K  H  L  S  E  P  F  I  V  L  V  T  G  K  C  I  A  N  G  R  T  M  S  Q  G  R  C  L  L  F  F  R  K  K  R  N  R  *  L  C  S  E  F  G  C  N  F  Q  I  Y  L  L  V  N  *  G  *  L  L  N  I  Q  V  C  V  *  F  V  Y  F  *  N  *  L  D  L  N  L  T  K  V  N  Y  I  </first_frame>
            <second_frame>  H  S  F  T  E  P  F  N  N  M  H  P  F  S  P  N  H  *  I  C  C  S  I  S  L  Q  N  N  D  P  I  E  I  S  E  D  *  D  W  Y  W  *  W  R  N  F  E  F  R  F  W  Q  K  R  Y  C  Y  K  L  *  S  C  V  V  A  A  I  W  W  T  G  D  A  *  V  S  *  Q  C  I  C  S  *  S  K  T  *  S  S  A  C  S  C  S  C  C  F  N  Q  S  A  *  Y  Q   : N  A  I  R  L  W  T  F  N  F  *  T  T  S  T  I  D  F  G  P  R  Y  K  W  *  S  C  S  C  W  K  F  C  Q  V  T  Y  S  W  A  G  C  I  W  C  S  A  S  N  R  C  E  G  Y  L  Y  *  L  C  Y  S  C  G  R  *  T  C  S  K  A  G  I  T  F  T  C   : G  S  Q  C  Y  P  F  C  C  S  N  C  L  A  C  A  K  K  Y  C  Q  N  K  R  G  :  A  *  G  I  G  H  R  W  R  R  S  S  R  F  L  C  N  S  A  C  C  G  C  R  L  P  C  F  Y  Y  V  W  R  R  E  Y  K  S  H  F  S  S  R  C  *  A  G  H  *  L  Y  Q  *   : G  C  *  S  S  T  *  G  A  F  *  C  C  L  G  Y  N  W  C  A  R  Y  R  E  N  G  H  *  P  F  K  E  R  W  T  L  H  D  V  T   : G  G  G  C  I  G  D  *  *  A  W  T  S  Y  W  S  S  Y  G  S  S  H  L  A  E  E  A  N  P  I  S  I  F  S  W  N  R :   I  L  V  E  L  Y  E  G  *  C  *  G  F  T  *  D  T  P  V  I  *  G  W  E  A  S  T  P  S  R  *  N  F  P  N  F  T  G  E  R  G  S  R  G  Q  G  *  T  T  N  S  W  Q  S  G  A  R  N  *  L  I  *  L  D  D  L  N  Q  Q  C  V  D  S  V  H  K  S  I  I  S  H  A  I  W  Y  Y  T  E  S  L  M  P  I  A  S  Y  T  I  S  S  L  C  R  I  T  R  P  N  L  H  S  V  G  I  Y  R  K  K  T  V  Q  P  V  N  S  Q  D  I  L  N  L  F  S  F  L  P  S  I  R  H  C  F  Y  V  A  L  N  I  *  V  S  H  L  S  C  S  *  Q  E  N  A  L  R  M  V  V  L  C  H  R  G  D  V  C  Y  F  L  E  K  K  E  I  D  N  Y  V  L  N  L  V  A  I  F  K  F  T  Y  W  *  I  K  G  D  C  *  I  S  K  Y  V  Y  N  L  S  I  S  K  I  D  *  I  *  I  *  Q  K  *  I  I  Y </second_frame>
            <third_frame>   T  L  S  L  N  H  S  T  I  C  I  H  F  P  Q  I  T  E  F  A  A  Q  F  L  C  K  T  M  I  R  L  R  Y  R  R  I  E  I  G  T  G  D  G  G  I  S  N  L  G  F  G  K  R  G  I  V  T  S  C  R  A  V  L  L  P  R  F  G  G  P  E  M  L  E  F  R  D  N  V  S  V  P  D  L  K  P  N  Q  V  L  V  R  A  R  A  V  S  I  N  P  L  D  T  R  :  M  R  S  G  Y  G  R  S  I  F  E  P  L  L  P  L  I  L  G  R  D  I  S  G  E  V  A  A  V  G  N  S  V  K  S  L  T  V  G  Q  D  V  F  G  A  L  H  P  T  A  V  R  G  T  Y  T  D  Y  A  I  L  A  E  D  E  L  A  P  K  P  G  S  L  S  H  V  :  E  A  S  A  I  P  F  A  A  L  T  A  W  R  A  L  K  S  T  A  R  I  R  E  G :   H  R  V  L  V  I  G  G  G  G  A  V  G  F  S  A  I  Q  L  A  V  A  A  G  C  H  V  S  T  T  C  G  G  E  S  I  S  R  I  L  A  A  G  A  E  Q  A  I  D  Y  T  S  E  :  D  A  E  V  A  L  K  G  H  F  D  A  V  L  D  T  I  G  V  P  D  T  E  R  M  G  I  S  L  L  K  K  G  G  H  Y  M  T  L  Q  :  G  E  A  A  S  V  T  D  R  H  G  L  A  I  G  L  P  M  A  A  A  I  L  L  K  K  Q  I  Q  Y  R  Y  S  H  G  I   : E  Y  W  W  N  Y  M  R  A  D  A  E  G  L  H  E  I  R  R  L  S  E  A  G  K  L  Q  L  P  V  D  K  T  F  P  I  S  Q  V  R  E  A  H  E  A  K  D  R  R  Q  I  P  G  K  V  V  L  E  I  D  *  F  N  W  T  I  L  T  N  S  A  W  I  Q  C  T  S  L  *  Y  L  M  Q  S  G  I  T  L  N  P  *  C  L  L  P  R  I  R  Y  H  L  F  A  E  *  P  D  P  T  Y  T  L  L  A  S  I  G  R  K  L  C  N  L  *  I  L  R  T  F  S  I  F  F  L  F  F  Q  V  S  V  I  V  S  M  L  R  *  T  F  K  *  A  I  Y  R  A  R  D  R  K  M  H  C  E  W  S  Y  Y  V  T  G  E  M  S  V  I  F  *  K  K  K  K  *  I  I  M  F  *  I  W  L  Q  F  S  N  L  L  T  G  E  L  R  V  I  A  K  Y  P  S  M  C  I  I  C  L  F  L  K  L  I  R  S  K  F  N  K  S  K  L  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12318" stop="12007"/>
                    <exon start="10578" stop="10351"/>
                    <exon start="10034" stop="9961"/>
                    <exon start="8445" stop="8286"/>
                    <exon start="8138" stop="8019"/>
                    <exon start="7908" stop="7800"/>
                    <exon start="6081" stop="5900"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1182</number_coding_nucleotides>
                  <number_encoded_amino_acids>394</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLSLNHSTICIHFPQITEFAAQFLCKTMIRLRYRRIEIGTGDGGISNLGFGKRGIVTSCRAVLLPRFGGPEMLEFRDNVSVPDLKPNQVLVRARAVSINPLDTRMRSGYGRSIFEPLLPLILGRDISGEVAAVGNSVKSLTVGQDVFGALHPTAVRGTYTDYAILAEDELAPKPGSLSHVEASAIPFAALTAWRALKSTARIREGHRVLVIGGGGAVGFSAIQLAVAAGCHVSTTCGGESISRILAAGAEQAIDYTSEDAEVALKGHFDAVLDTIGVPDTERMGISLLKKGGHYMTLQGEAASVTDRHGLAIGLPMAAAILLKKQIQYRYSHGIEYWWNYMRADAEGLHEIRRLSEAGKLQLPVDKTFPISQVREAHEAKDRRQIPGKVVLEID*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5894" stop="5634"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDDLNQQCVDSVHKSIISHAIWYYTESLMPIASYTISSLCRITRPNLHSVGIYRKKTVQPVNSQDILNLFSFLPSIRHCFYVALNI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="19892" PGL_stop="15443"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19892" e_stop="19727"/>
            <exon e_start="19649" e_stop="19577"/>
            <exon e_start="19507" e_stop="19429"/>
            <exon e_start="18116" e_stop="18032"/>
            <exon e_start="17565" e_stop="17447"/>
            <exon e_start="16237" e_stop="16149"/>
            <exon e_start="16075" e_stop="16011"/>
            <exon e_start="15895" e_stop="15817"/>
            <exon e_start="15569" e_stop="15443"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="0.976"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="19892" e_stop="19727" e_length="166"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="19726" i_stop="19650" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19649" e_stop="19577" e_length="73"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="19576" i_stop="19508" i_length="69"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="19507" e_stop="19429" e_length="79"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.952">
            <gDNA_intron_boundary i_start="19428" i_stop="18117" i_length="1312"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="18116" e_stop="18032" e_length="85"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="18031" i_stop="17566" i_length="466"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="17565" e_stop="17447" e_length="119"/>
          </exon>
          <intron i_serial="5" don_prob="0.940" acc_prob="0.958">
            <gDNA_intron_boundary i_start="17446" i_stop="16238" i_length="1209"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="16237" e_stop="16149" e_length="89"/>
          </exon>
          <intron i_serial="6" don_prob="0.978" acc_prob="0.988">
            <gDNA_intron_boundary i_start="16148" i_stop="16076" i_length="73"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="16075" e_stop="16011" e_length="65"/>
          </exon>
          <intron i_serial="7" don_prob="0.990" acc_prob="0.971">
            <gDNA_intron_boundary i_start="16010" i_stop="15896" i_length="115"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="15895" e_stop="15817" e_length="79"/>
          </exon>
          <intron i_serial="8" don_prob="0.953" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15816" i_stop="15570" i_length="247"/>
          </intron>
          <exon e_serial="9" e_score="0.969">
            <gDNA_exon_boundary e_start="15569" e_stop="15443" e_length="127"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19892" stop="19727"/>
              <exon start="19649" stop="19577"/>
              <exon start="19507" stop="19429"/>
              <exon start="18116" stop="18032"/>
              <exon start="17565" stop="17447"/>
              <exon start="16237" stop="16149"/>
              <exon start="16075" stop="16011"/>
              <exon start="15895" stop="15817"/>
              <exon start="15569" stop="15443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323119" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAGCAGGGGCATTTTAGGTCCTTCAACCCTTCACATGTTGGGAGCTTAAAGCGGATGTTAAAGTAATTGAGCCACCACGCGGAGAGGAAGACAAAAATGGCGGATCAATTGAAAAACCCTAAGAAACAGTTTCAGCTAAATCCCAACTGGGCTCAGCTCCGTCAA : CAACTCAACAGCAATGGCTTCCAAAAACAACTGTCAAATCCTTCAGAAACAGAAAATCCTAATTCCATATTAG : GAAAGCGCAAAAGCAGGCCCAGTGATGATTCCGGAGATGCTACGCCTAATCCTCTTACTCCAACTTCATCGGATTCAAG : TGTTACAGATGTGATAGGGATGGATTGTGAAATGGTTGGCGTAAGCTCTGTGGGAAACAGAAGTGCTCTTGGGCGAGTCACACTG : TTAATTGCAGGTCAACCAATGGGGAAATGTGATATATGACGAATATGTTCGTCCAGTTGAACGTGTTGTTGACTTCCGCACCAAAATCAGTGGTATTAGACCTCAGCACTTAAAGAAAG : CAAAAGATTTCCGCGTTGTTCAGAAGGAGGTGGCAGAACTAATAAAGGGACGGATTCTTGTTGGCCATGCTCTGCGAAATGATTTTAAG : GCCTTGTTATTAGGCCATCAAAAGCAGGATATTCGTGACACTTCTGAATATAAGCATTTTCTAAG : GGAAGGACGCAGTCGTGCACTACGGAACCTTGCTACTGAAGTCCTTGGAGTGGAGATACAAAATGGAGAGCATTGCCCA : ATAGAGGATGCCCGTGCTGCTATGATGCTTTACCTAAAGCACAGAAAAGAATGGGAAAAGAGCATCAAGGACTTTGCAAGACTGAAGGAGAAACAGAAAAAGCGTAAACCAAAGAAAAAAAAGAGGA</gDNA_template>
            <first_frame> I  A  G  A  F  *  V  L  Q  P  F  T  C  W  E  L  K  A  D  V  K  V  I  E  P  P  R  G  E  E  D  K  N  G  G  S  I  E  K  P  *  E  T  V  S  A  K  S  Q  L  G  S  A  P  S   : T  T  Q  Q  Q  W  L  P  K  T  T  V  K  S  F  R  N  R  K  S  *  F  H  I  R :   K  A  Q  K  Q  A  Q  *  *  F  R  R  C  Y  A  *  S  S  Y  S  N  F  I  G  F  K  :  C  Y  R  C  D  R  D  G  L  *  N  G  W  R  K  L  C  G  K  Q  K  C  S  W  A  S  H  T   : V  N  C  R  S  T  N  G  E  M  *  Y  M  T  N  M  F  V  Q  L  N  V  L  L  T  S  A  P  K  S  V  V  L  D  L  S  T  *  R  K  :  Q  K  I  S  A  L  F  R  R  R  W  Q  N  *  *  R  D  G  F  L  L  A  M  L  C  E  M  I  L  R :   P  C  Y  *  A  I  K  S  R  I  F  V  T  L  L  N  I  S  I  F  *   : G  K  D  A  V  V  H  Y  G  T  L  L  L  K  S  L  E  W  R  Y  K  M  E  S  I  A  Q :   *  R  M  P  V  L  L  *  C  F  T  *  S  T  E  K  N  G  K  R  A  S  R  T  L  Q  D  *  R  R  N  R  K  S  V  N  Q  R  K  K  R  G </first_frame>
            <second_frame>  *  Q  G  H  F  R  S  F  N  P  S  H  V  G  S  L  K  R  M  L  K  *  L  S  H  H  A  E  R  K  T  K  M  A  D  Q  L  K  N  P  K  K  Q  F  Q  L  N  P  N  W  A  Q  L  R  Q  :  Q  L  N  S  N  G  F  Q  K  Q  L  S  N  P  S  E  T  E  N  P  N  S  I  L   : G  K  R  K  S  R  P  S  D  D  S  G  D  A  T  P  N  P  L  T  P  T  S  S  D  S  S :   V  T  D  V  I  G  M  D  C  E  M  V  G  V  S  S  V  G  N  R  S  A  L  G  R  V  T  L  :  L  I  A  G  Q  P  M  G  K  C  D  I  *  R  I  C  S  S  S  *  T  C  C  *  L  P  H  Q  N  Q  W  Y  *  T  S  A  L  K  E  S :   K  R  F  P  R  C  S  E  G  G  G  R  T  N  K  G  T  D  S  C  W  P  C  S  A  K  *  F  *   : G  L  V  I  R  P  S  K  A  G  Y  S  *  H  F  *  I  *  A  F  S  K  :  G  R  T  Q  S  C  T  T  E  P  C  Y  *  S  P  W  S  G  D  T  K  W  R  A  L  P   : N  R  G  C  P  C  C  Y  D  A  L  P  K  A  Q  K  R  M  G  K  E  H  Q  G  L  C  K  T  E  G  E  T  E  K  A  *  T  K  E  K  K  E   </second_frame>
            <third_frame>   S  R  G  I  L  G  P  S  T  L  H  M  L  G  A  *  S  G  C  *  S  N  *  A  T  T  R  R  G  R  Q  K  W  R  I  N  *  K  T  L  R  N  S  F  S  *  I  P  T  G  L  S  S  V  N :   N  S  T  A  M  A  S  K  N  N  C  Q  I  L  Q  K  Q  K  I  L  I  P  Y  *  :  E  S  A  K  A  G  P  V  M  I  P  E  M  L  R  L  I  L  L  L  Q  L  H  R  I  Q   : V  L  Q  M  *  *  G  W  I  V  K  W  L  A  *  A  L  W  E  T  E  V  L  L  G  E  S  H  C :   *  L  Q  V  N  Q  W  G  N  V  I  Y  D  E  Y  V  R  P  V  E  R  V  V  D  F  R  T  K  I  S  G  I  R  P  Q  H  L  K  K   : A  K  D  F  R  V  V  Q  K  E  V  A  E  L  I  K  G  R  I  L  V  G  H  A  L  R  N  D  F  K  :  A  L  L  L  G  H  Q  K  Q  D  I  R  D  T  S  E  Y  K  H  F  L  R :   E  G  R  S  R  A  L  R  N  L  A  T  E  V  L  G  V  E  I  Q  N  G  E  H  C  P  :  I  E  D  A  R  A  A  M  M  L  Y  L  K  H  R  K  E  W  E  K  S  I  K  D  F  A  R  L  K  E  K  Q  K  K  R  K  P  K  K  K  K  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17561" stop="17447"/>
                    <exon start="16237" stop="16149"/>
                    <exon start="16075" stop="16011"/>
                    <exon start="15895" stop="15817"/>
                    <exon start="15569" stop="15444"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>474</number_coding_nucleotides>
                  <number_encoded_amino_acids>158</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQVNQWGNVIYDEYVRPVERVVDFRTKISGIRPQHLKKAKDFRVVQKEVAELIKGRILVGHALRNDFKALLLGHQKQDIRDTSEYKHFLREGRSRALRNLATEVLGVEIQNGEHCPIEDARAAMMLYLKHRKEWEKSIKDFARLKEKQKKRKPKKKKR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="32376" PGL_stop="34874"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32376" e_stop="32532"/>
            <exon e_start="32789" e_stop="32871"/>
            <exon e_start="34330" e_stop="34874"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.788" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32376" e_stop="32532" e_length="157"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.987">
            <gDNA_intron_boundary i_start="32533" i_stop="32788" i_length="256"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32789" e_stop="32871" e_length="83"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.788">
            <gDNA_intron_boundary i_start="32872" i_stop="34329" i_length="1458"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="34330" e_stop="34874" e_length="545"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32376" stop="32532"/>
              <exon start="32789" stop="32871"/>
              <exon start="34330" stop="34874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313687" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTACAAGAAAAATAACGTGGCCAATTAATAGGAGAATCAAACAGCCAATTAGCAGTTAACCGTAAAATTTCCACTTTTCCATTGAAACCTCTCTTCAATTATCGCTTTGCCCTTTTTGCTTCTTTGATCCATCGATCGTCTGATCAACCTTTAATTG : GTGTTTTTAAACTGAGCATTTTTGTGCCTTTTATGTTTAAAGGCAACAATCAAGGAAGAAGTTGATATTTGGATGATAAAAAG : GAATCACCCCACAACATTGTAACCACGAAGATAGGCTAAAGGAGCATGTCACACAGTAATCGCATAATTGATATGGAAGCAGATCAGCAAGGTCAAGAGTTTTTTCATTCAGCACCTTGCATGTTTTACGGGAGCATAGCGGCTTTACCACAGCCTACTGTCCATGCAGTAGTACCAGCTCCCGTAAATGCTGGTAATATATATTTGCACCATGTATCAGATCATCAAGAGGGTCCCTTAACGTATGGCTTGACACAGTTCAATGGGATTCAACATCAGCATCCTGCCAGCAATCCTGACCTAGCTATTTCTGCTTCAAATCATTACAATCCTTACATGGCTGTTCCATCCGCTTCTGGAGATTTCCCTATTCCAGTAAATCACGGGCCACTTGATCGGCTTCATACAAGTTCTCACAACATCTTTGGAATGAATTCAGATTACGGAAGGAACAATCATTATATGGACGATGTCAGAGGCTCATATAAGAGAAAGAATGCTGAAGGAATTCCTGCAAATCTTCAATATCATCATGCTTTGGCAGG</gDNA_template>
            <first_frame> L  Q  E  K  *  R  G  Q  L  I  G  E  S  N  S  Q  L  A  V  N  R  K  I  S  T  F  P  L  K  P  L  F  N  Y  R  F  A  L  F  A  S  L  I  H  R  S  S  D  Q  P  L  I   : G  V  F  K  L  S  I  F  V  P  F  M  F  K  G  N  N  Q  G  R  S  *  Y  L  D  D  K  K  :  E  S  P  H  N  I  V  T  T  K  I  G  *  R  S  M  S  H  S  N  R  I  I  D  M  E  A  D  Q  Q  G  Q  E  F  F  H  S  A  P  C  M  F  Y  G  S  I  A  A  L  P  Q  P  T  V  H  A  V  V  P  A  P  V  N  A  G  N  I  Y  L  H  H  V  S  D  H  Q  E  G  P  L  T  Y  G  L  T  Q  F  N  G  I  Q  H  Q  H  P  A  S  N  P  D  L  A  I  S  A  S  N  H  Y  N  P  Y  M  A  V  P  S  A  S  G  D  F  P  I  P  V  N  H  G  P  L  D  R  L  H  T  S  S  H  N  I  F  G  M  N  S  D  Y  G  R  N  N  H  Y  M  D  D  V  R  G  S  Y  K  R  K  N  A  E  G  I  P  A  N  L  Q  Y  H  H  A  L  A   </first_frame>
            <second_frame>  Y  K  K  N  N  V  A  N  *  *  E  N  Q  T  A  N  *  Q  L  T  V  K  F  P  L  F  H  *  N  L  S  S  I  I  A  L  P  F  L  L  L  *  S  I  D  R  L  I  N  L  *  L  :  V  F  L  N  *  A  F  L  C  L  L  C  L  K  A  T  I  K  E  E  V  D  I  W  M  I  K  R :   N  H  P  T  T  L  *  P  R  R  *  A  K  G  A  C  H  T  V  I  A  *  L  I  W  K  Q  I  S  K  V  K  S  F  F  I  Q  H  L  A  C  F  T  G  A  *  R  L  Y  H  S  L  L  S  M  Q  *  Y  Q  L  P  *  M  L  V  I  Y  I  C  T  M  Y  Q  I  I  K  R  V  P  *  R  M  A  *  H  S  S  M  G  F  N  I  S  I  L  P  A  I  L  T  *  L  F  L  L  Q  I  I  T  I  L  T  W  L  F  H  P  L  L  E  I  S  L  F  Q  *  I  T  G  H  L  I  G  F  I  Q  V  L  T  T  S  L  E  *  I  Q  I  T  E  G  T  I  I  I  W  T  M  S  E  A  H  I  R  E  R  M  L  K  E  F  L  Q  I  F  N  I  I  M  L  W  Q  </second_frame>
            <third_frame>   T  R  K  I  T  W  P  I  N  R  R  I  K  Q  P  I  S  S  *  P  *  N  F  H  F  S  I  E  T  S  L  Q  L  S  L  C  P  F  C  F  F  D  P  S  I  V  *  S  T  F  N  W :   C  F  *  T  E  H  F  C  A  F  Y  V  *  R  Q  Q  S  R  K  K  L  I  F  G  *  *  K   : G  I  T  P  Q  H  C  N  H  E  D  R  L  K  E  H  V  T  Q  *  S  H  N  *  Y  G  S  R  S  A  R  S  R  V  F  S  F  S  T  L  H  V  L  R  E  H  S  G  F  T  T  A  Y  C  P  C  S  S  T  S  S  R  K  C  W  *  Y  I  F  A  P  C  I  R  S  S  R  G  S  L  N  V  W  L  D  T  V  Q  W  D  S  T  S  A  S  C  Q  Q  S  *  P  S  Y  F  C  F  K  S  L  Q  S  L  H  G  C  S  I  R  F  W  R  F  P  Y  S  S  K  S  R  A  T  *  S  A  S  Y  K  F  S  Q  H  L  W  N  E  F  R  L  R  K  E  Q  S  L  Y  G  R  C  Q  R  L  I  *  E  K  E  C  *  R  N  S  C  K  S  S  I  S  S  C  F  G  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34369" stop="34872"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>504</number_coding_nucleotides>
                  <number_encoded_amino_acids>168</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSMSHSNRIIDMEADQQGQEFFHSAPCMFYGSIAALPQPTVHAVVPAPVNAGNIYLHHVSDHQEGPLTYGLTQFNGIQHQHPASNPDLAISASNHYNPYMAVPSASGDFPIPVNHGPLDRLHTSSHNIFGMNSDYGRNNHYMDDVRGSYKRKNAEGIPANLQYHHALA</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32391" stop="32532"/>
                    <exon start="32789" stop="32853"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGQLIGESNSQLAVNRKISTFPLKPLFNYRFALFASLIHRSSDQPLIGVFKLSIFVPFMFKGNNQGRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="32970" e_stop="33733"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="32970" e_stop="33733" e_length="764"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32970" stop="33733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329980" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAAGATTATGTTCTTTTATGTGTCTTGCTTGGGTGTATGCCTGTCTAGTTTGGTTTTCCTTTTCTGGTGTTTGGGAAATAATCAACTCAATTGGAATGTTTTGATTTATATGTGTGTATGCATCCTGTTACTAAGTTGGCTTGAGAGAGGTGATTAGATAGGACATGACGCAGTTTCAGCTTACCGAGGACATGATAGGAGAGTGTGGAGGACATGGATTATGACAGAAGGTTGGTAGGTAGCAGTGCGCTGTCTTGTTGTCCGTACATATTAGTAGTTGTAGTATTGCTCCTGTAGTTTCTTGTTCTTCCACTTCTTTACTGTTTGTTGATTTCTTGTATCTCAATTATTGTTTTGTTTTGTTGTAGTTTTTGTTCTGTTTCGATATGTTGTTTCTTGTACTTCCGTTACTTCTTTCGTTGGACTGCATTGGACTGTTTCCATTGAGACGAGGATCTATCAGGAAGAACCTTTCTATCTCTTAGGTTGGGTAAGGTTTGAGTACTCTCTACCCTCTCCAGTTTGTTTATTAATCGTTGTTGTTGTTGTCGTGTAATTTCTAGGTAGTGTTTTTTCATGAGCATCAAACATTTGAATGAAAACTGTGTAATTTGTCTTGCCTCCTCGGGTAACCAAACATGACATAAGTTAATCTCGAAGTCTTAATGAGGGTTGGTGTTGTTTTAAAAAAACACACAACTAAAATCAAGATTTTATTTGGTGTGTTCCCAACTTGAAAATTTGCATCCGGGTTTGTCAATCT</gDNA_template>
            <first_frame> G  R  L  C  S  F  M  C  L  A  W  V  Y  A  C  L  V  W  F  S  F  S  G  V  W  E  I  I  N  S  I  G  M  F  *  F  I  C  V  Y  A  S  C  Y  *  V  G  L  R  E  V  I  R  *  D  M  T  Q  F  Q  L  T  E  D  M  I  G  E  C  G  G  H  G  L  *  Q  K  V  G  R  *  Q  C  A  V  L  L  S  V  H  I  S  S  C  S  I  A  P  V  V  S  C  S  S  T  S  L  L  F  V  D  F  L  Y  L  N  Y  C  F  V  L  L  *  F  L  F  C  F  D  M  L  F  L  V  L  P  L  L  L  S  L  D  C  I  G  L  F  P  L  R  R  G  S  I  R  K  N  L  S  I  S  *  V  G  *  G  L  S  T  L  Y  P  L  Q  F  V  Y  *  S  L  L  L  L  S  C  N  F  *  V  V  F  F  H  E  H  Q  T  F  E  *  K  L  C  N  L  S  C  L  L  G  *  P  N  M  T  *  V  N  L  E  V  L  M  R  V  G  V  V  L  K  K  H  T  T  K  I  K  I  L  F  G  V  F  P  T  *  K  F  A  S  G  F  V  N   </first_frame>
            <second_frame>  E  D  Y  V  L  L  C  V  L  L  G  C  M  P  V  *  F  G  F  P  F  L  V  F  G  K  *  S  T  Q  L  E  C  F  D  L  Y  V  C  M  H  P  V  T  K  L  A  *  E  R  *  L  D  R  T  *  R  S  F  S  L  P  R  T  *  *  E  S  V  E  D  M  D  Y  D  R  R  L  V  G  S  S  A  L  S  C  C  P  Y  I  L  V  V  V  V  L  L  L  *  F  L  V  L  P  L  L  Y  C  L  L  I  S  C  I  S  I  I  V  L  F  C  C  S  F  C  S  V  S  I  C  C  F  L  Y  F  R  Y  F  F  R  W  T  A  L  D  C  F  H  *  D  E  D  L  S  G  R  T  F  L  S  L  R  L  G  K  V  *  V  L  S  T  L  S  S  L  F  I  N  R  C  C  C  C  R  V  I  S  R  *  C  F  F  M  S  I  K  H  L  N  E  N  C  V  I  C  L  A  S  S  G  N  Q  T  *  H  K  L  I  S  K  S  *  *  G  L  V  L  F  *  K  N  T  Q  L  K  S  R  F  Y  L  V  C  S  Q  L  E  N  L  H  P  G  L  S  I  </second_frame>
            <third_frame>   K  I  M  F  F  Y  V  S  C  L  G  V  C  L  S  S  L  V  F  L  F  W  C  L  G  N  N  Q  L  N  W  N  V  L  I  Y  M  C  V  C  I  L  L  L  S  W  L  E  R  G  D  *  I  G  H  D  A  V  S  A  Y  R  G  H  D  R  R  V  W  R  T  W  I  M  T  E  G  W  *  V  A  V  R  C  L  V  V  R  T  Y  *  *  L  *  Y  C  S  C  S  F  L  F  F  H  F  F  T  V  C  *  F  L  V  S  Q  L  L  F  C  F  V  V  V  F  V  L  F  R  Y  V  V  S  C  T  S  V  T  S  F  V  G  L  H  W  T  V  S  I  E  T  R  I  Y  Q  E  E  P  F  Y  L  L  G  W  V  R  F  E  Y  S  L  P  S  P  V  C  L  L  I  V  V  V  V  V  V  *  F  L  G  S  V  F  S  *  A  S  N  I  *  M  K  T  V  *  F  V  L  P  P  R  V  T  K  H  D  I  S  *  S  R  S  L  N  E  G  W  C  C  F  K  K  T  H  N  *  N  Q  D  F  I  W  C  V  P  N  L  K  I  C  I  R  V  C  Q  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33302" stop="33526"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLVSQLLFCFVVVFVLFRYVVSCTSVTSFVGLHWTVSIETRIYQEEPFYLLGWVRFEYSLPSPVCLLIVVVVVV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="35908" PGL_stop="38086"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35908" e_stop="35963"/>
            <exon e_start="36093" e_stop="36191"/>
            <exon e_start="36369" e_stop="36536"/>
            <exon e_start="37861" e_stop="38086"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.973" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35908" e_stop="35963" e_length="56"/>
          </exon>
          <intron i_serial="1" don_prob="0.973" acc_prob="0.984">
            <gDNA_intron_boundary i_start="35964" i_stop="36092" i_length="129"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36093" e_stop="36191" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="0.955" acc_prob="0.999">
            <gDNA_intron_boundary i_start="36192" i_stop="36368" i_length="177"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="36369" e_stop="36536" e_length="168"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.983">
            <gDNA_intron_boundary i_start="36537" i_stop="37860" i_length="1324"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="37861" e_stop="38086" e_length="226"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35908" stop="35963"/>
              <exon start="36093" stop="36191"/>
              <exon start="36369" stop="36536"/>
              <exon start="37861" stop="38086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342030" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGAAAGAAATACTAGACATCAGAACCTTCCTAACATGAGAGTTCTGCCAGAAGAC : GGAGTGGCAATGCTGGATGTTTCGGGCTACCATGAAGTTAACAATCCCATTGATCAGCACAGAGATATGCGTTTAGACGTAGATCACATGTCCTACGAG : GAGCTTCTTGCACTGGGGGAGCAGATTGGCAATGTAACAACTGGATTGTCAGATGAAATAATCGTTAACCGCTTGAAAACAAGATCATTTTCGCCCCCCGTTATTCCTTGCACCCTGGAAACTGCTGCATGTTTGGATCACGAAGCTGATTTCTGTGTCATATGCCAG : ACTGACTACAACAAGCAAGAAACTATAGGAACTCTTGATTGCGGGCACGAATATCATGCAGAATGCGTAAAGAAGTGGTTGGTTGTGAAGAACACTTGCCCTATCTGCAAATCCACCGGATTGTCAATAGAAAGAAAAGATTTGTGAAAACAGGGAGTTGGTTGGTTGGTGGATGAATAATTATAAGAGTGGGACATTTTGTTCTCTTGTTAAATATTTGTTCTCT</gDNA_template>
            <first_frame> L  K  E  I  L  D  I  R  T  F  L  T  *  E  F  C  Q  K  T :   E  W  Q  C  W  M  F  R  A  T  M  K  L  T  I  P  L  I  S  T  E  I  C  V  *  T  *  I  T  C  P  T  R :   S  F  L  H  W  G  S  R  L  A  M  *  Q  L  D  C  Q  M  K  *  S  L  T  A  *  K  Q  D  H  F  R  P  P  L  F  L  A  P  W  K  L  L  H  V  W  I  T  K  L  I  S  V  S  Y  A  R :   L  T  T  T  S  K  K  L  *  E  L  L  I  A  G  T  N  I  M  Q  N  A  *  R  S  G  W  L  *  R  T  L  A  L  S  A  N  P  P  D  C  Q  *  K  E  K  I  C  E  N  R  E  L  V  G  W  W  M  N  N  Y  K  S  G  T  F  C  S  L  V  K  Y  L  F  S </first_frame>
            <second_frame>  *  K  K  Y  *  T  S  E  P  S  *  H  E  S  S  A  R  R   : R  S  G  N  A  G  C  F  G  L  P  *  S  *  Q  S  H  *  S  A  Q  R  Y  A  F  R  R  R  S  H  V  L  R   : G  A  S  C  T  G  G  A  D  W  Q  C  N  N  W  I  V  R  *  N  N  R  *  P  L  E  N  K  I  I  F  A  P  R  Y  S  L  H  P  G  N  C  C  M  F  G  S  R  S  *  F  L  C  H  M  P   : D  *  L  Q  Q  A  R  N  Y  R  N  S  *  L  R  A  R  I  S  C  R  M  R  K  E  V  V  G  C  E  E  H  L  P  Y  L  Q  I  H  R  I  V  N  R  K  K  R  F  V  K  T  G  S  W  L  V  G  G  *  I  I  I  R  V  G  H  F  V  L  L  L  N  I  C  S   </second_frame>
            <third_frame>   E  R  N  T  R  H  Q  N  L  P  N  M  R  V  L  P  E  D  :  G  V  A  M  L  D  V  S  G  Y  H  E  V  N  N  P  I  D  Q  H  R  D  M  R  L  D  V  D  H  M  S  Y  E  :  E  L  L  A  L  G  E  Q  I  G  N  V  T  T  G  L  S  D  E  I  I  V  N  R  L  K  T  R  S  F  S  P  P  V  I  P  C  T  L  E  T  A  A  C  L  D  H  E  A  D  F  C  V  I  C  Q  :  T  D  Y  N  K  Q  E  T  I  G  T  L  D  C  G  H  E  Y  H  A  E  C  V  K  K  W  L  V  V  K  N  T  C  P  I  C  K  S  T  G  L  S  I  E  R  K  D  L  *  K  Q  G  V  G  W  L  V  D  E  *  L  *  E  W  D  I  L  F  S  C  *  I  F  V  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35910" stop="35963"/>
                    <exon start="36093" stop="36191"/>
                    <exon start="36369" stop="36536"/>
                    <exon start="37861" stop="38007"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ERNTRHQNLPNMRVLPEDGVAMLDVSGYHEVNNPIDQHRDMRLDVDHMSYEELLALGEQIGNVTTGLSDEIIVNRLKTRSFSPPVIPCTLETAACLDHEADFCVICQTDYNKQETIGTLDCGHEYHAECVKKWLVVKNTCPICKSTGLSIERKDL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="42122" PGL_stop="39100"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42122" e_stop="41822"/>
            <exon e_start="39790" e_stop="39100"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42122" e_stop="41822" e_length="301"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.985">
            <gDNA_intron_boundary i_start="41821" i_stop="39791" i_length="2031"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="39790" e_stop="39100" e_length="691"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42122" stop="41822"/>
              <exon start="39790" stop="39100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320805" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTGTTTTCCTTCTTAGAACTCTCAGCTATCTCCTTAAGTAAACCAAAATAGTTGATTTTGTTGAATTAATCGCAGATGGCAGGTGGGTATAGAGCTGAGGATGATTACGATTATCTGTTCAAGTTGGTGTTAATTGGAGATTCTGGTGTAGGAAAATCCAATCTCCTTTCTCGATTCTCAAGAAACGAGTTCAATCTTGAATCAAAGTCTACTATTGGTGTTGAATTTGCTACCCGTAGCATTAAGGTAGATGATAAGATCGTTAAGGCTCAGATTTGGGATACTGCTGGACAAGAAAG : GTATCGTGCAATTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTAGTTGTCTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAAAGAACTTCGAGACCATACCGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCCGACTTACGTCACTTGCGTGCTGTTTCAACAGAGGATGCCAAGGCCTTTGCTGAAAGAGAGAGTACCTTCTATATGGAGACTTCAGCACTTGAATCCTTGAACGTTGAGAATGCGTTTACAGAAGTACTGACAGAGATATACAGGGTGGTCTGTCGGAAAGCACTCGAAGTTGGGGATGATCCTACTGCGTTGCCGAAGGGGCAAACTATAAATGTTGGCAAGGATGATGTTTCAGCTGTGAAAAAAGTTGGTTGCTGCTCTGTGTAAGCTAAAAAAATCAAGAAATCGGTGAAGTTAAACTTTCAAATGGCTTCTCCTATAGTTGCATTGAGTATTCTCAGTTTTGAATATCTTAGGAATTATTCCACCTCTGTATTGTTTCATTAACTTACCTTTAGTTTGTACTTTGTACCCTATTTTGCTAGTCTTTTGACTCTTTGTAAAAGAGTTTTACTATTATTTATATACTTTTACATTATATTATTATTTTGTATGTTTATGGCATCTTATGAGTTTAAATAGAGAAAC</gDNA_template>
            <first_frame> I  C  F  P  S  *  N  S  Q  L  S  P  *  V  N  Q  N  S  *  F  C  *  I  N  R  R  W  Q  V  G  I  E  L  R  M  I  T  I  I  C  S  S  W  C  *  L  E  I  L  V  *  E  N  P  I  S  F  L  D  S  Q  E  T  S  S  I  L  N  Q  S  L  L  L  V  L  N  L  L  P  V  A  L  R  *  M  I  R  S  L  R  L  R  F  G  I  L  L  D  K  K   : G  I  V  Q  L  Q  V  H  T  T  E  G  L  S  V  H  *  L  S  T  I  S  L  D  M  S  H  L  K  M  L  R  D  G  *  K  N  F  E  T  I  P  T  K  I  *  S  *  C  S  L  G  T  R  P  T  Y  V  T  C  V  L  F  Q  Q  R  M  P  R  P  L  L  K  E  R  V  P  S  I  W  R  L  Q  H  L  N  P  *  T  L  R  M  R  L  Q  K  Y  *  Q  R  Y  T  G  W  S  V  G  K  H  S  K  L  G  M  I  L  L  R  C  R  R  G  K  L  *  M  L  A  R  M  M  F  Q  L  *  K  K  L  V  A  A  L  C  K  L  K  K  S  R  N  R  *  S  *  T  F  K  W  L  L  L  *  L  H  *  V  F  S  V  L  N  I  L  G  I  I  P  P  L  Y  C  F  I  N  L  P  L  V  C  T  L  Y  P  I  L  L  V  F  *  L  F  V  K  E  F  Y  Y  Y  L  Y  T  F  T  L  Y  Y  Y  F  V  C  L  W  H  L  M  S  L  N  R  E   </first_frame>
            <second_frame>  F  V  F  L  L  R  T  L  S  Y  L  L  K  *  T  K  I  V  D  F  V  E  L  I  A  D  G  R  W  V  *  S  *  G  *  L  R  L  S  V  Q  V  G  V  N  W  R  F  W  C  R  K  I  Q  S  P  F  S  I  L  K  K  R  V  Q  S  *  I  K  V  Y  Y  W  C  *  I  C  Y  P  *  H  *  G  R  *  *  D  R  *  G  S  D  L  G  Y  C  W  T  R  K  :  V  S  C  N  Y  K  C  I  L  Q  R  G  C  R  C  I  S  C  L  R  Y  H  S  T  C  H  I  *  K  C  *  E  M  V  K  R  T  S  R  P  Y  R  P  K  Y  S  H  N  A  R  W  E  Q  G  R  L  T  S  L  A  C  C  F  N  R  G  C  Q  G  L  C  *  K  R  E  Y  L  L  Y  G  D  F  S  T  *  I  L  E  R  *  E  C  V  Y  R  S  T  D  R  D  I  Q  G  G  L  S  E  S  T  R  S  W  G  *  S  Y  C  V  A  E  G  A  N  Y  K  C  W  Q  G  *  C  F  S  C  E  K  S  W  L  L  L  C  V  S  *  K  N  Q  E  I  G  E  V  K  L  S  N  G  F  S  Y  S  C  I  E  Y  S  Q  F  *  I  S  *  E  L  F  H  L  C  I  V  S  L  T  Y  L  *  F  V  L  C  T  L  F  C  *  S  F  D  S  L  *  K  S  F  T  I  I  Y  I  L  L  H  Y  I  I  I  L  Y  V  Y  G  I  L  *  V  *  I  E  K  </second_frame>
            <third_frame>   L  F  S  F  L  E  L  S  A  I  S  L  S  K  P  K  *  L  I  L  L  N  *  S  Q  M  A  G  G  Y  R  A  E  D  D  Y  D  Y  L  F  K  L  V  L  I  G  D  S  G  V  G  K  S  N  L  L  S  R  F  S  R  N  E  F  N  L  E  S  K  S  T  I  G  V  E  F  A  T  R  S  I  K  V  D  D  K  I  V  K  A  Q  I  W  D  T  A  G  Q  E  R :   Y  R  A  I  T  S  A  Y  Y  R  G  A  V  G  A  L  V  V  Y  D  I  T  R  H  V  T  F  E  N  V  E  R  W  L  K  E  L  R  D  H  T  D  Q  N  I  V  I  M  L  V  G  N  K  A  D  L  R  H  L  R  A  V  S  T  E  D  A  K  A  F  A  E  R  E  S  T  F  Y  M  E  T  S  A  L  E  S  L  N  V  E  N  A  F  T  E  V  L  T  E  I  Y  R  V  V  C  R  K  A  L  E  V  G  D  D  P  T  A  L  P  K  G  Q  T  I  N  V  G  K  D  D  V  S  A  V  K  K  V  G  C  C  S  V  *  A  K  K  I  K  K  S  V  K  L  N  F  Q  M  A  S  P  I  V  A  L  S  I  L  S  F  E  Y  L  R  N  Y  S  T  S  V  L  F  H  *  L  T  F  S  L  Y  F  V  P  Y  F  A  S  L  L  T  L  C  K  R  V  L  L  L  F  I  Y  F  Y  I  I  L  L  F  C  M  F  M  A  S  Y  E  F  K  *  R  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42051" stop="41822"/>
                    <exon start="39790" stop="39361"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>657</number_coding_nucleotides>
                  <number_encoded_amino_acids>219</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQMAGGYRAEDDYDYLFKLVLIGDSGVGKSNLLSRFSRNEFNLESKSTIGVEFATRSIKVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDITRHVTFENVERWLKELRDHTDQNIVIMLVGNKADLRHLRAVSTEDAKAFAERESTFYMETSALESLNVENAFTEVLTEIYRVVCRKALEVGDDPTALPKGQTINVGKDDVSAVKKVGCCSV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="56621" PGL_stop="47396"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56621" e_stop="56476"/>
            <exon e_start="55376" e_stop="55243"/>
            <exon e_start="53874" e_stop="53789"/>
            <exon e_start="53378" e_stop="53338"/>
            <exon e_start="52786" e_stop="52653"/>
            <exon e_start="50025" e_stop="49723"/>
            <exon e_start="47417" e_stop="47396"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.868" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.430" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.885" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="0.993"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56621" e_stop="56476" e_length="146"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.868">
            <gDNA_intron_boundary i_start="56475" i_stop="55377" i_length="1099"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55376" e_stop="55243" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="55242" i_stop="53875" i_length="1368"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="53874" e_stop="53789" e_length="86"/>
          </exon>
          <intron i_serial="3" don_prob="0.951" acc_prob="0.430">
            <gDNA_intron_boundary i_start="53788" i_stop="53379" i_length="410"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="53378" e_stop="53338" e_length="41"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="0.997">
            <gDNA_intron_boundary i_start="53337" i_stop="52787" i_length="551"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="52786" e_stop="52653" e_length="134"/>
          </exon>
          <intron i_serial="5" don_prob="0.885" acc_prob="0.978">
            <gDNA_intron_boundary i_start="52652" i_stop="50026" i_length="2627"/>
          </intron>
          <exon e_serial="6" e_score="0.993">
            <gDNA_exon_boundary e_start="50025" e_stop="49723" e_length="303"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="49722" i_stop="47418" i_length="2305"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="47417" e_stop="47396" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56621" stop="56476"/>
              <exon start="55376" stop="55243"/>
              <exon start="53874" stop="53789"/>
              <exon start="53378" stop="53338"/>
              <exon start="52786" stop="52653"/>
              <exon start="50025" stop="49723"/>
              <exon start="47417" stop="47396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331325" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGATGATAATGTGCCGGGAGAAACGCAAAATGACAATTTTCAGCCACAAGACTTTTACATGAATTCTTCTGAAAGAAGTGACCGTGAAGGTTCTTCTATGGATCAGAGTGGTGATGATCCCTATCATTCCATATTCTATAATCGTG : ATGAAAATTTAGAGGATGTTCTCAATATGCATCGGGCCCTGCGTAATGACAACTATAAGAATGCAATAAAGTATTTACGACATGCTCTGCATTCCAGTCCACCAGTACTAGAGGCTTTTCATCCTTTAATACAG : ATGCTGCTGCTCGGGGATCAGGTGAAGGAGGCTCTTGATGAGGTGGAAAAATTTACTCCATACACCAACACATCATTTCAGTTGAG : ATCTCTGTCCTGATAACACTTCCAATTGTTATGTTCAAAAG : GTTGAAAGCTACTATCTTGGAGCATTTTGACAGCGGTAACTATGTCAAACTTTCAGCAATCCATGAGGAAAATTTGGAGAAAGATCCTGCTTGTAGCCACTCATTGGGGAGACTCATCATCTTGCATAGAAGGG : GAGAGTATAGCACTGAAAAGCTGATGGAAATGATAGCTTTGCATTTGGATGCTACTCATGCAAATTGTGACACATGGAAGGAGTTAGCTTGTTGCTTCCTGAGGCTTTTTCAATGTGAAGAAGATTGCATGTCTGTGTGCTCCAACGGTGAAGATAGTGAGAAGCAAAAATTCACAAAATGGATTAGTCAGATTCCAAAAATATTTAGCGATTATGAGTCTAGCAAGTCATGGAGGCTCCGTTGCAGATGGTGGCTGACTCATTACTTCAGCCAGACTATACTCACTTCAGATATTGCTTCAG : GTGACTGGGAACTGCTGACTTA</gDNA_template>
            <first_frame> *  *  *  C  A  G  R  N  A  K  *  Q  F  S  A  T  R  L  L  H  E  F  F  *  K  K  *  P  *  R  F  F  Y  G  S  E  W  *  *  S  L  S  F  H  I  L  *  S  * :   *  K  F  R  G  C  S  Q  Y  A  S  G  P  A  *  *  Q  L  *  E  C  N  K  V  F  T  T  C  S  A  F  Q  S  T  S  T  R  G  F  S  S  F  N  T   : D  A  A  A  R  G  S  G  E  G  G  S  *  *  G  G  K  I  Y  S  I  H  Q  H  I  I  S  V  E  :  I  S  V  L  I  T  L  P  I  V  M  F  K  R :   L  K  A  T  I  L  E  H  F  D  S  G  N  Y  V  K  L  S  A  I  H  E  E  N  L  E  K  D  P  A  C  S  H  S  L  G  R  L  I  I  L  H  R  R   : G  E  Y  S  T  E  K  L  M  E  M  I  A  L  H  L  D  A  T  H  A  N  C  D  T  W  K  E  L  A  C  C  F  L  R  L  F  Q  C  E  E  D  C  M  S  V  C  S  N  G  E  D  S  E  K  Q  K  F  T  K  W  I  S  Q  I  P  K  I  F  S  D  Y  E  S  S  K  S  W  R  L  R  C  R  W  W  L  T  H  Y  F  S  Q  T  I  L  T  S  D  I  A  S   : G  D  W  E  L  L  T   </first_frame>
            <second_frame>  D  D  N  V  P  G  E  T  Q  N  D  N  F  Q  P  Q  D  F  Y  M  N  S  S  E  R  S  D  R  E  G  S  S  M  D  Q  S  G  D  D  P  Y  H  S  I  F  Y  N  R   : D  E  N  L  E  D  V  L  N  M  H  R  A  L  R  N  D  N  Y  K  N  A  I  K  Y  L  R  H  A  L  H  S  S  P  P  V  L  E  A  F  H  P  L  I  Q  :  M  L  L  L  G  D  Q  V  K  E  A  L  D  E  V  E  K  F  T  P  Y  T  N  T  S  F  Q  L  R :   S  L  S  *  *  H  F  Q  L  L  C  S  K   : G  *  K  L  L  S  W  S  I  L  T  A  V  T  M  S  N  F  Q  Q  S  M  R  K  I  W  R  K  I  L  L  V  A  T  H  W  G  D  S  S  S  C  I  E  G  :  E  S  I  A  L  K  S  *  W  K  *  *  L  C  I  W  M  L  L  M  Q  I  V  T  H  G  R  S  *  L  V  A  S  *  G  F  F  N  V  K  K  I  A  C  L  C  A  P  T  V  K  I  V  R  S  K  N  S  Q  N  G  L  V  R  F  Q  K  Y  L  A  I  M  S  L  A  S  H  G  G  S  V  A  D  G  G  *  L  I  T  S  A  R  L  Y  S  L  Q  I  L  L  Q  :  V  T  G  N  C  *  L  </second_frame>
            <third_frame>   M  I  M  C  R  E  K  R  K  M  T  I  F  S  H  K  T  F  T  *  I  L  L  K  E  V  T  V  K  V  L  L  W  I  R  V  V  M  I  P  I  I  P  Y  S  I  I  V  :  M  K  I  *  R  M  F  S  I  C  I  G  P  C  V  M  T  T  I  R  M  Q  *  S  I  Y  D  M  L  C  I  P  V  H  Q  Y  *  R  L  F  I  L  *  Y  R :   C  C  C  S  G  I  R  *  R  R  L  L  M  R  W  K  N  L  L  H  T  P  T  H  H  F  S  *   : D  L  C  P  D  N  T  S  N  C  Y  V  Q  K  :  V  E  S  Y  Y  L  G  A  F  *  Q  R  *  L  C  Q  T  F  S  N  P  *  G  K  F  G  E  R  S  C  L  *  P  L  I  G  E  T  H  H  L  A  *  K  G :   R  V  *  H  *  K  A  D  G  N  D  S  F  A  F  G  C  Y  S  C  K  L  *  H  M  E  G  V  S  L  L  L  P  E  A  F  S  M  *  R  R  L  H  V  C  V  L  Q  R  *  R  *  *  E  A  K  I  H  K  M  D  *  S  D  S  K  N  I  *  R  L  *  V  *  Q  V  M  E  A  P  L  Q  M  V  A  D  S  L  L  Q  P  D  Y  T  H  F  R  Y  C  F  R :   *  L  G  T  A  D  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53833" stop="53789"/>
                    <exon start="53378" stop="53338"/>
                    <exon start="52786" stop="52653"/>
                    <exon start="50025" stop="49723"/>
                    <exon start="47417" stop="47398"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>543</number_coding_nucleotides>
                  <number_encoded_amino_acids>181</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGKIYSIHQHIISVEISVLITLPIVMFKRLKATILEHFDSGNYVKLSAIHEENLEKDPACSHSLGRLIILHRRGEYSTEKLMEMIALHLDATHANCDTWKELACCFLRLFQCEEDCMSVCSNGEDSEKQKFTKWISQIPKIFSDYESSKSWRLRCRWWLTHYFSQTILTSDIASGDWELLT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="63652" PGL_stop="68819"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63815" e_stop="63999"/>
            <exon e_start="66359" e_stop="66438"/>
            <exon e_start="66535" e_stop="67108"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.892" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="63815" e_stop="63999" e_length="185"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="1.000">
            <gDNA_intron_boundary i_start="64000" i_stop="66358" i_length="2359"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="66359" e_stop="66438" e_length="80"/>
          </exon>
          <intron i_serial="2" don_prob="0.892" acc_prob="0.993">
            <gDNA_intron_boundary i_start="66439" i_stop="66534" i_length="96"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="66535" e_stop="67108" e_length="574"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63815" stop="63999"/>
              <exon start="66359" stop="66438"/>
              <exon start="66535" stop="67077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63975" stop="63999"/>
              <exon start="66359" stop="66438"/>
              <exon start="66535" stop="67108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336323" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAACTTCCAATTTTCCTTCTGATTTGGAGTACCAAACAGGATTTGGGAATCATTTTTCATCTGAAGCTATAGTTGGAGCTCTACCTCAAGGTCAAAATAGTCCTCTTATTTGCCCCTTTGGACTTTATGCTGAGCAGATCTCTGGCACCTCTTTTACTTCCCCTCGCAAACTTAATCAACGCAG : GTATACTGCCAACAAATCAATGGAGAACTCTGCCTTCTGCAATGCTGATGGCGACTTTCTGATTGTTCCTCAAAAAGGAA : GGCTGTGGATTACTACTGAATGCGGAAGATTGCAGGTTTGTCCTGGTGAAATTGTGATTTTGCCTCAAGGATATAGGTTTGCTGTTGACCTTCCGGATGGACCTTCACGTGGTTATGTCGCTGAAACTTTTGGAACTCATCTTCAACTTCCTGATCTGGGGCCAATAGGTGCTTTAGAAAGTGCAATCCTATTTGCTGTTTAAACAGCTGATGTTATTTACTGATGATATGGATTTGCACATGTATTTAGGCGCAAATGGTCTAGCTGCTCCAAGGGATTTTCTTGTTCCTGTTGCCTGGTACGGAGATGGCTCCCGTCCAGGTTACACTATTGTGCAGAAGTATGGTGGTGAACTCTTCACTGCGAAGCAGGACTTCTCTCCTTTTAATGTGGTCGCTTGGCATGGCAATTATGTTCCTTATAAGGCGGGTATTTCTCTATATTTCAATCTCTCATAATATGAGTGCCCTTGTGCACTTTTTATCACAATTTACTTTGCTACATGGAAACTTGATGCTGTTTGCCTCCTTAGTCCTGACGTAATATATTTCCTCAATTTGCAGTATGATTTAA</gDNA_template>
            <first_frame> R  T  S  N  F  P  S  D  L  E  Y  Q  T  G  F  G  N  H  F  S  S  E  A  I  V  G  A  L  P  Q  G  Q  N  S  P  L  I  C  P  F  G  L  Y  A  E  Q  I  S  G  T  S  F  T  S  P  R  K  L  N  Q  R  R :   Y  T  A  N  K  S  M  E  N  S  A  F  C  N  A  D  G  D  F  L  I  V  P  Q  K  G   : R  L  W  I  T  T  E  C  G  R  L  Q  V  C  P  G  E  I  V  I  L  P  Q  G  Y  R  F  A  V  D  L  P  D  G  P  S  R  G  Y  V  A  E  T  F  G  T  H  L  Q  L  P  D  L  G  P  I  G  A  L  E  S  A  I  L  F  A  V  *  T  A  D  V  I  Y  *  *  Y  G  F  A  H  V  F  R  R  K  W  S  S  C  S  K  G  F  S  C  S  C  C  L  V  R  R  W  L  P  S  R  L  H  Y  C  A  E  V  W  W  *  T  L  H  C  E  A  G  L  L  S  F  *  C  G  R  L  A  W  Q  L  C  S  L  *  G  G  Y  F  S  I  F  Q  S  L  I  I  *  V  P  L  C  T  F  Y  H  N  L  L  C  Y  M  E  T  *  C  C  L  P  P  *  S  *  R  N  I  F  P  Q  F  A  V  *  F   </first_frame>
            <second_frame>  E  L  P  I  F  L  L  I  W  S  T  K  Q  D  L  G  I  I  F  H  L  K  L  *  L  E  L  Y  L  K  V  K  I  V  L  L  F  A  P  L  D  F  M  L  S  R  S  L  A  P  L  L  L  P  L  A  N  L  I  N  A   : G  I  L  P  T  N  Q  W  R  T  L  P  S  A  M  L  M  A  T  F  *  L  F  L  K  K  E  :  G  C  G  L  L  L  N  A  E  D  C  R  F  V  L  V  K  L  *  F  C  L  K  D  I  G  L  L  L  T  F  R  M  D  L  H  V  V  M  S  L  K  L  L  E  L  I  F  N  F  L  I  W  G  Q  *  V  L  *  K  V  Q  S  Y  L  L  F  K  Q  L  M  L  F  T  D  D  M  D  L  H  M  Y  L  G  A  N  G  L  A  A  P  R  D  F  L  V  P  V  A  W  Y  G  D  G  S  R  P  G  Y  T  I  V  Q  K  Y  G  G  E  L  F  T  A  K  Q  D  F  S  P  F  N  V  V  A  W  H  G  N  Y  V  P  Y  K  A  G  I  S  L  Y  F  N  L  S  *  Y  E  C  P  C  A  L  F  I  T  I  Y  F  A  T  W  K  L  D  A  V  C  L  L  S  P  D  V  I  Y  F  L  N  L  Q  Y  D  L  </second_frame>
            <third_frame>   N  F  Q  F  S  F  *  F  G  V  P  N  R  I  W  E  S  F  F  I  *  S  Y  S  W  S  S  T  S  R  S  K  *  S  S  Y  L  P  L  W  T  L  C  *  A  D  L  W  H  L  F  Y  F  P  S  Q  T  *  S  T  Q  :  V  Y  C  Q  Q  I  N  G  E  L  C  L  L  Q  C  *  W  R  L  S  D  C  S  S  K  R  K :   A  V  D  Y  Y  *  M  R  K  I  A  G  L  S  W  *  N  C  D  F  A  S  R  I  *  V  C  C  *  P  S  G  W  T  F  T  W  L  C  R  *  N  F  W  N  S  S  S  T  S  *  S  G  A  N  R  C  F  R  K  C  N  P  I  C  C  L  N  S  *  C  Y  L  L  M  I  W  I  C  T  C  I  *  A  Q  M  V  *  L  L  Q  G  I  F  L  F  L  L  P  G  T  E  M  A  P  V  Q  V  T  L  L  C  R  S  M  V  V  N  S  S  L  R  S  R  T  S  L  L  L  M  W  S  L  G  M  A  I  M  F  L  I  R  R  V  F  L  Y  I  S  I  S  H  N  M  S  A  L  V  H  F  L  S  Q  F  T  L  L  H  G  N  L  M  L  F  A  S  L  V  L  T  *  Y  I  S  S  I  C  S  M  I  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63815" stop="63999"/>
                    <exon start="66359" stop="66438"/>
                    <exon start="66535" stop="66737"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTSNFPSDLEYQTGFGNHFSSEAIVGALPQGQNSPLICPFGLYAEQISGTSFTSPRKLNQRRYTANKSMENSAFCNADGDFLIVPQKGRLWITTECGRLQVCPGEIVILPQGYRFAVDLPDGPSRGYVAETFGTHLQLPDLGPIGALESAILFAV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66712" stop="66993"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVQSYLLFKQLMLFTDDMDLHMYLGANGLAAPRDFLVPVAWYGDGSRPGYTIVQKYGGELFTAKQDFSPFNVVAWHGNYVPYKAGISLYFNLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="63652" e_stop="63999"/>
            <exon e_start="65799" e_stop="66029"/>
            <exon e_start="66359" e_stop="66438"/>
            <exon e_start="66535" e_stop="66702"/>
            <exon e_start="66785" e_stop="66960"/>
            <exon e_start="67099" e_stop="67168"/>
            <exon e_start="67288" e_stop="67442"/>
            <exon e_start="67527" e_stop="67610"/>
            <exon e_start="68257" e_stop="68819"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.772" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.892" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.334" acc_prob="0.797" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.331" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="63652" e_stop="63999" e_length="348"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.994">
            <gDNA_intron_boundary i_start="64000" i_stop="65798" i_length="1799"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65799" e_stop="66029" e_length="231"/>
          </exon>
          <intron i_serial="2" don_prob="0.772" acc_prob="1.000">
            <gDNA_intron_boundary i_start="66030" i_stop="66358" i_length="329"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="66359" e_stop="66438" e_length="80"/>
          </exon>
          <intron i_serial="3" don_prob="0.892" acc_prob="0.993">
            <gDNA_intron_boundary i_start="66439" i_stop="66534" i_length="96"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="66535" e_stop="66702" e_length="168"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.978">
            <gDNA_intron_boundary i_start="66703" i_stop="66784" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="66785" e_stop="66960" e_length="176"/>
          </exon>
          <intron i_serial="5" don_prob="0.334" acc_prob="0.797">
            <gDNA_intron_boundary i_start="66961" i_stop="67098" i_length="138"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="67099" e_stop="67168" e_length="70"/>
          </exon>
          <intron i_serial="6" don_prob="0.971" acc_prob="0.984">
            <gDNA_intron_boundary i_start="67169" i_stop="67287" i_length="119"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="67288" e_stop="67442" e_length="155"/>
          </exon>
          <intron i_serial="7" don_prob="0.331" acc_prob="0.965">
            <gDNA_intron_boundary i_start="67443" i_stop="67526" i_length="84"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="67527" e_stop="67610" e_length="84"/>
          </exon>
          <intron i_serial="8" don_prob="0.985" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67611" i_stop="68256" i_length="646"/>
          </intron>
          <exon e_serial="9" e_score="0.991">
            <gDNA_exon_boundary e_start="68257" e_stop="68819" e_length="563"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63652" stop="63999"/>
              <exon start="65799" stop="66029"/>
              <exon start="66359" stop="66438"/>
              <exon start="66535" stop="66702"/>
              <exon start="66785" stop="66960"/>
              <exon start="67099" stop="67168"/>
              <exon start="67288" stop="67442"/>
              <exon start="67527" stop="67610"/>
              <exon start="68257" stop="68819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317896" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACAAATAAGGACATGTGAAAGTTCCTCAAACAAACACGCCTCTGTCAAGGATCATCCTGCCACGACAGCACTGTTTCGGTTTCTTCTTCTCAACTCTTTCTTTTTTAGACATAAAAATGTTCATAAAATAGCAGAGGTGTCAAAGAAATGGAGTGCAGCAGCAGAACTTCCAATTTTCCTTCTGATTTGGAGTACCAAACAGGATTTGGGAATCATTTTTCATCTGAAGCTATAGTTGGAGCTCTACCTCAAGGTCAAAATAGTCCTCTTATTTGCCCCTTTGGACTTTATGCTGAGCAGATCTCTGGCACCTCTTTTACTTCCCCTCGCAAACTTAATCAACGCAG : TTGGCTATATCGTATTAAGCCATCGGTTACACATGAACCGTTTAGACCAAGAATGCCGAGACATGAAAAGCTTGTGAGTGAATTCAACCAGTCAAACAGTTCTGCTACACCAACTCAACTAAGGTGGAAGCCTGTTGAGATACCAGAAACACCGACTGATTTCATTGATGGTTTGTATACTATATGCGGGGCTGGCAGCTCATATCTCCGACATGGTTTTGCAATTCACAT : GTATACTGCCAACAAATCAATGGAGAACTCTGCCTTCTGCAATGCTGATGGCGACTTTCTGATTGTTCCTCAAAAAGGAA : GGCTGTGGATTACTACTGAATGCGGAAGATTGCAGGTTTGTCCTGGTGAAATTGTGATTTTGCCTCAAGGATATAGGTTTGCTGTTGACCTTCCGGATGGACCTTCACGTGGTTATGTCGCTGAAACTTTTGGAACTCATCTTCAACTTCCTGATCTGGGGCCAATAG : GCGCAAATGGTCTAGCTGCTCCAAGGGATTTTCTTGTTCCTGTTGCCTGGTACGGAGATGGCTCCCGTCCAGGTTACACTATTGTGCAGAAGTATGGTGGTGAACTCTTCACTGCGAAGCAGGACTTCTCTCCTTTTAATGTGGTCGCTTGGCATGGCAATTATGTTCCTTATAAG : TATGATTTAAGCAAGTTCTGCCCTTACAATACTGTATTGATGGACCACAGTGATCCTTCAATTAACACAG : TTTTGACAGCACCAACAGATAAACCTGGTGTGGCGTTGCTTGACTTTGTCATTTTCCCTCCCCGGTGGTTGGTTGCTGAACACACCTTCCGTCCTCCATATTATCATCGCAATTGTATGAGCGAATTTATGGGTCTAATCTATGGCGGATACGAG : GCAAAAGCTGATGGTTTTCACCCTGGCGGGGCAAGCCTTCACAGCTGCATGACTCCTCATGGTCCTGATACCAAAACATTTGAG : GCAACCATTGCACTTGGAAATGAAGCTGGTCCACATAGAATAGCTGATACCATGGCTTTCATGTTTGAGTCTTGCCTAGTACCCCGAGTCTGTCCGTGGGCTCTTGAATCTCCGTTTATGGATCACGATTATTACCAATGCTGGATTGGCTTGAAGTCTCACTTCTCAGGACTATCTATGAACGAAGACAACGTCGATTTGCAGAAAGGAAAACCCATAGAAAGGTGAAATGCTCATTGTTCAGCTAGCTCCTGTAGTTCCTCCTAAAGTGACTTAAACTTGTACATAAGGAGTCACAGGCATGTAAAACATGAAATAAACCCTATGTTAGTATCAGATTGAAAGTTTAGGGTGGCGATCCAAGCGCGGATATAGTGGTAAGATGAAACCAATGTTCTATGAAATTGCGACGCAAGTAAAAATGTGTTACCGTGATGATGTTGCATGTAGACTTGTAGTTTATGGTGCATTTTGTATATATATAAAGATGGAACTATCATATAAATACTTGTTGCAATTACAAGAGCAATGAATTAAGTAATGATTTATGGCAACGTTTGATA</gDNA_template>
            <first_frame> N  K  *  G  H  V  K  V  P  Q  T  N  T  P  L  S  R  I  I  L  P  R  Q  H  C  F  G  F  F  F  S  T  L  S  F  L  D  I  K  M  F  I  K  *  Q  R  C  Q  R  N  G  V  Q  Q  Q  N  F  Q  F  S  F  *  F  G  V  P  N  R  I  W  E  S  F  F  I  *  S  Y  S  W  S  S  T  S  R  S  K  *  S  S  Y  L  P  L  W  T  L  C  *  A  D  L  W  H  L  F  Y  F  P  S  Q  T  *  S  T  Q  :  L  A  I  S  Y  *  A  I  G  Y  T  *  T  V  *  T  K  N  A  E  T  *  K  A  C  E  *  I  Q  P  V  K  Q  F  C  Y  T  N  S  T  K  V  E  A  C  *  D  T  R  N  T  D  *  F  H  *  W  F  V  Y  Y  M  R  G  W  Q  L  I  S  P  T  W  F  C  N  S  H  :  V  Y  C  Q  Q  I  N  G  E  L  C  L  L  Q  C  *  W  R  L  S  D  C  S  S  K  R  K :   A  V  D  Y  Y  *  M  R  K  I  A  G  L  S  W  *  N  C  D  F  A  S  R  I  *  V  C  C  *  P  S  G  W  T  F  T  W  L  C  R  *  N  F  W  N  S  S  S  T  S  *  S  G  A  N  R :   R  K  W  S  S  C  S  K  G  F  S  C  S  C  C  L  V  R  R  W  L  P  S  R  L  H  Y  C  A  E  V  W  W  *  T  L  H  C  E  A  G  L  L  S  F  *  C  G  R  L  A  W  Q  L  C  S  L  *   : V  *  F  K  Q  V  L  P  L  Q  Y  C  I  D  G  P  Q  *  S  F  N  *  H  S :   F  D  S  T  N  R  *  T  W  C  G  V  A  *  L  C  H  F  P  S  P  V  V  G  C  *  T  H  L  P  S  S  I  L  S  S  Q  L  Y  E  R  I  Y  G  S  N  L  W  R  I  R   : G  K  S  *  W  F  S  P  W  R  G  K  P  S  Q  L  H  D  S  S  W  S  *  Y  Q  N  I  *   : G  N  H  C  T  W  K  *  S  W  S  T  *  N  S  *  Y  H  G  F  H  V  *  V  L  P  S  T  P  S  L  S  V  G  S  *  I  S  V  Y  G  S  R  L  L  P  M  L  D  W  L  E  V  S  L  L  R  T  I  Y  E  R  R  Q  R  R  F  A  E  R  K  T  H  R  K  V  K  C  S  L  F  S  *  L  L  *  F  L  L  K  *  L  K  L  V  H  K  E  S  Q  A  C  K  T  *  N  K  P  Y  V  S  I  R  L  K  V  *  G  G  D  P  S  A  D  I  V  V  R  *  N  Q  C  S  M  K  L  R  R  K  *  K  C  V  T  V  M  M  L  H  V  D  L  *  F  M  V  H  F  V  Y  I  *  R  W  N  Y  H  I  N  T  C  C  N  Y  K  S  N  E  L  S  N  D  L  W  Q  R  L  I </first_frame>
            <second_frame>  T  N  K  D  M  *  K  F  L  K  Q  T  R  L  C  Q  G  S  S  C  H  D  S  T  V  S  V  S  S  S  Q  L  F  L  F  *  T  *  K  C  S  *  N  S  R  G  V  K  E  M  E  C  S  S  R  T  S  N  F  P  S  D  L  E  Y  Q  T  G  F  G  N  H  F  S  S  E  A  I  V  G  A  L  P  Q  G  Q  N  S  P  L  I  C  P  F  G  L  Y  A  E  Q  I  S  G  T  S  F  T  S  P  R  K  L  N  Q  R  S :   W  L  Y  R  I  K  P  S  V  T  H  E  P  F  R  P  R  M  P  R  H  E  K  L  V  S  E  F  N  Q  S  N  S  S  A  T  P  T  Q  L  R  W  K  P  V  E  I  P  E  T  P  T  D  F  I  D  G  L  Y  T  I  C  G  A  G  S  S  Y  L  R  H  G  F  A  I  H  M :   Y  T  A  N  K  S  M  E  N  S  A  F  C  N  A  D  G  D  F  L  I  V  P  Q  K  G   : R  L  W  I  T  T  E  C  G  R  L  Q  V  C  P  G  E  I  V  I  L  P  Q  G  Y  R  F  A  V  D  L  P  D  G  P  S  R  G  Y  V  A  E  T  F  G  T  H  L  Q  L  P  D  L  G  P  I   : G  A  N  G  L  A  A  P  R  D  F  L  V  P  V  A  W  Y  G  D  G  S  R  P  G  Y  T  I  V  Q  K  Y  G  G  E  L  F  T  A  K  Q  D  F  S  P  F  N  V  V  A  W  H  G  N  Y  V  P  Y  K  :  Y  D  L  S  K  F  C  P  Y  N  T  V  L  M  D  H  S  D  P  S  I  N  T   : V  L  T  A  P  T  D  K  P  G  V  A  L  L  D  F  V  I  F  P  P  R  W  L  V  A  E  H  T  F  R  P  P  Y  Y  H  R  N  C  M  S  E  F  M  G  L  I  Y  G  G  Y  E  :  A  K  A  D  G  F  H  P  G  G  A  S  L  H  S  C  M  T  P  H  G  P  D  T  K  T  F  E  :  A  T  I  A  L  G  N  E  A  G  P  H  R  I  A  D  T  M  A  F  M  F  E  S  C  L  V  P  R  V  C  P  W  A  L  E  S  P  F  M  D  H  D  Y  Y  Q  C  W  I  G  L  K  S  H  F  S  G  L  S  M  N  E  D  N  V  D  L  Q  K  G  K  P  I  E  R  *  N  A  H  C  S  A  S  S  C  S  S  S  *  S  D  L  N  L  Y  I  R  S  H  R  H  V  K  H  E  I  N  P  M  L  V  S  D  *  K  F  R  V  A  I  Q  A  R  I  *  W  *  D  E  T  N  V  L  *  N  C  D  A  S  K  N  V  L  P  *  *  C  C  M  *  T  C  S  L  W  C  I  L  Y  I  Y  K  D  G  T  I  I  *  I  L  V  A  I  T  R  A  M  N  *  V  M  I  Y  G  N  V  *   </second_frame>
            <third_frame>   Q  I  R  T  C  E  S  S  S  N  K  H  A  S  V  K  D  H  P  A  T  T  A  L  F  R  F  L  L  L  N  S  F  F  F  R  H  K  N  V  H  K  I  A  E  V  S  K  K  W  S  A  A  A  E  L  P  I  F  L  L  I  W  S  T  K  Q  D  L  G  I  I  F  H  L  K  L  *  L  E  L  Y  L  K  V  K  I  V  L  L  F  A  P  L  D  F  M  L  S  R  S  L  A  P  L  L  L  P  L  A  N  L  I  N  A   : V  G  Y  I  V  L  S  H  R  L  H  M  N  R  L  D  Q  E  C  R  D  M  K  S  L  *  V  N  S  T  S  Q  T  V  L  L  H  Q  L  N  *  G  G  S  L  L  R  Y  Q  K  H  R  L  I  S  L  M  V  C  I  L  Y  A  G  L  A  A  H  I  S  D  M  V  L  Q  F  T   : C  I  L  P  T  N  Q  W  R  T  L  P  S  A  M  L  M  A  T  F  *  L  F  L  K  K  E  :  G  C  G  L  L  L  N  A  E  D  C  R  F  V  L  V  K  L  *  F  C  L  K  D  I  G  L  L  L  T  F  R  M  D  L  H  V  V  M  S  L  K  L  L  E  L  I  F  N  F  L  I  W  G  Q  *  :  A  Q  M  V  *  L  L  Q  G  I  F  L  F  L  L  P  G  T  E  M  A  P  V  Q  V  T  L  L  C  R  S  M  V  V  N  S  S  L  R  S  R  T  S  L  L  L  M  W  S  L  G  M  A  I  M  F  L  I  S :   M  I  *  A  S  S  A  L  T  I  L  Y  *  W  T  T  V  I  L  Q  L  T  Q  :  F  *  Q  H  Q  Q  I  N  L  V  W  R  C  L  T  L  S  F  S  L  P  G  G  W  L  L  N  T  P  S  V  L  H  I  I  I  A  I  V  *  A  N  L  W  V  *  S  M  A  D  T  R :   Q  K  L  M  V  F  T  L  A  G  Q  A  F  T  A  A  *  L  L  M  V  L  I  P  K  H  L  R :   Q  P  L  H  L  E  M  K  L  V  H  I  E  *  L  I  P  W  L  S  C  L  S  L  A  *  Y  P  E  S  V  R  G  L  L  N  L  R  L  W  I  T  I  I  T  N  A  G  L  A  *  S  L  T  S  Q  D  Y  L  *  T  K  T  T  S  I  C  R  K  E  N  P  *  K  G  E  M  L  I  V  Q  L  A  P  V  V  P  P  K  V  T  *  T  C  T  *  G  V  T  G  M  *  N  M  K  *  T  L  C  *  Y  Q  I  E  S  L  G  W  R  S  K  R  G  Y  S  G  K  M  K  P  M  F  Y  E  I  A  T  Q  V  K  M  C  Y  R  D  D  V  A  C  R  L  V  V  Y  G  A  F  C  I  Y  I  K  M  E  L  S  Y  K  Y  L  L  Q  L  Q  E  Q  *  I  K  *  *  F  M  A  T  F  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63779" stop="63999"/>
                    <exon start="65799" stop="66029"/>
                    <exon start="66359" stop="66438"/>
                    <exon start="66535" stop="66702"/>
                    <exon start="66785" stop="66960"/>
                    <exon start="67099" stop="67168"/>
                    <exon start="67288" stop="67442"/>
                    <exon start="67527" stop="67610"/>
                    <exon start="68257" stop="68484"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1410</number_coding_nucleotides>
                  <number_encoded_amino_acids>470</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSRGVKEMECSSRTSNFPSDLEYQTGFGNHFSSEAIVGALPQGQNSPLICPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSVTHEPFRPRMPRHEKLVSEFNQSNSSATPTQLRWKPVEIPETPTDFIDGLYTICGAGSSYLRHGFAIHMYTANKSMENSAFCNADGDFLIVPQKGRLWITTECGRLQVCPGEIVILPQGYRFAVDLPDGPSRGYVAETFGTHLQLPDLGPIGANGLAAPRDFLVPVAWYGDGSRPGYTIVQKYGGELFTAKQDFSPFNVVAWHGNYVPYKYDLSKFCPYNTVLMDHSDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIYGGYEAKADGFHPGGASLHSCMTPHGPDTKTFEATIALGNEAGPHRIADTMAFMFESCLVPRVCPWALESPFMDHDYYQCWIGLKSHFSGLSMNEDNVDLQKGKPIER*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68588" stop="68788"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YQIESLGWRSKRGYSGKMKPMFYEIATQVKMCYRDDVACRLVVYGAFCIYIKMELSYKYLLQLQEQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="73399" PGL_stop="77336"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73399" e_stop="73416"/>
            <exon e_start="74320" e_stop="74465"/>
            <exon e_start="74543" e_stop="74819"/>
            <exon e_start="74896" e_stop="75198"/>
            <exon e_start="75525" e_stop="75896"/>
            <exon e_start="76412" e_stop="76428"/>
            <exon e_start="77183" e_stop="77223"/>
            <exon e_start="77306" e_stop="77336"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.561" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.446" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.632" acc_prob="0.855" e_score="0.588"/>
          <exon-intron don_prob="0.760" acc_prob="0.000" e_score="0.488"/>
          <exon-only e_score="0.581"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73399" e_stop="73416" e_length="18"/>
          </exon>
          <intron i_serial="1" don_prob="0.561" acc_prob="0.941">
            <gDNA_intron_boundary i_start="73417" i_stop="74319" i_length="903"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74320" e_stop="74465" e_length="146"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.446">
            <gDNA_intron_boundary i_start="74466" i_stop="74542" i_length="77"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="74543" e_stop="74819" e_length="277"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.953">
            <gDNA_intron_boundary i_start="74820" i_stop="74895" i_length="76"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="74896" e_stop="75198" e_length="303"/>
          </exon>
          <intron i_serial="4" don_prob="0.965" acc_prob="0.997">
            <gDNA_intron_boundary i_start="75199" i_stop="75524" i_length="326"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="75525" e_stop="75896" e_length="372"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="75897" i_stop="76411" i_length="515"/>
          </intron>
          <exon e_serial="6" e_score="0.588">
            <gDNA_exon_boundary e_start="76412" e_stop="76428" e_length="17"/>
          </exon>
          <intron i_serial="6" don_prob="0.632" acc_prob="0.855">
            <gDNA_intron_boundary i_start="76429" i_stop="77182" i_length="754"/>
          </intron>
          <exon e_serial="7" e_score="0.488">
            <gDNA_exon_boundary e_start="77183" e_stop="77223" e_length="41"/>
          </exon>
          <intron i_serial="7" don_prob="0.760" acc_prob="0.000">
            <gDNA_intron_boundary i_start="77224" i_stop="77305" i_length="82"/>
          </intron>
          <exon e_serial="8" e_score="0.581">
            <gDNA_exon_boundary e_start="77306" e_stop="77336" e_length="31"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73399" stop="73416"/>
              <exon start="74320" stop="74465"/>
              <exon start="74543" stop="74819"/>
              <exon start="74896" stop="75198"/>
              <exon start="75525" stop="75896"/>
              <exon start="76412" stop="76428"/>
              <exon start="77183" stop="77223"/>
              <exon start="77306" stop="77336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324621" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACGGATTCAGCTTGACGG : GTCTTTCAGCCTTGGATACAGAGTAGACGTCTTGCTTATGTAAAACATAAACATGTTATATCAGGAGTTTTGAGACAGTTAAGAATGCGTGCATTGGGGAGGCTTTGCACAGACCAGGGAGCACCAAATATAGAAGTTTTAGAAAA : GCTATTCAACGCAATTGATGAAAATGAGGATGGGCATCTTTCCCGTACTGAATTAAAAGCTCTGGTAGTAGGAATCCGTTTGGAGGAGATAAACTTACATGAGAATGATGCTGTAGAAAAACTGATGAAGGACTTCGATACTTCACATGATCATCAAGTTGAAATGTCCGAGTTCATTGCTGGAGTTACAAAATGGCTTACTGAGGCCAGGGGTTCCGAGGCTCCTTCTCCTGAAGCTGGTCCTGATACAATGAAGTACCTCGATGACTTGCATGAG : CAAACAAGGAGAGAACACCATTTCTTAGGGGATCAAAGTGACGAAAGTGTTGAGACTGTTGAGAATCCTAGATCAACTGCAATTAAGGCTGTTCTACTGCTTTTGCTGGGTACTGTCATTGCTGCCGTCTTTGCTGATCCTCTGGTTGATGCTGTCAATAATTTCTCTAGTGCCACAAGCATTCCTTCTTTCTTCATCTCATTCATTGCTCTGCCACTGGCGACCAACTCCAGTGAGGCGGTGTCAGCTATTATCTTTGCTAGCCGGAAAAAGTTGAGATCTGCATCATTAACATTTTCTGAG : TTGTATGGAGCAGTGACAATGAACAATCTCCTTTGTCTATCAGTCTTCCTGGCTCTCGTCTATATCAGAGGATTGACATGGGACTTCTCGTCTGAAGTCTTGGTTATTCTAATTGTCTGTGTTGTCGTGGGGGTCTTTGCAAGCGTCCGAAGCACCTTTCCTCTTTGGACTTCCTTGCTAGCTTTTCTACTTTACCCCTTCTCTCTCGTACTTGTATATGTTCTTGACTACAAATTTGGTTGGTCTTAGTCTTGGACGACTCTTTTTGTTGAACTTGTATGCATCTTTTGAGCTACGGCACACTTTAGTCGCTCTTGGATTTTCTAGTAGAACTTCAGTAACTTGAAAACTGAAGTCATTTGTTTACTTACA : AGACAGAGACACAACAA : ATGAATGCTGATATGGAGAAGCGGCTGTAGGAGGAGCCAAC : GAGCTTCTCTGGAGAAAAGAGTAAAAAAAAA</gDNA_template>
            <first_frame> T  D  S  A  *  R  :  V  F  Q  P  W  I  Q  S  R  R  L  A  Y  V  K  H  K  H  V  I  S  G  V  L  R  Q  L  R  M  R  A  L  G  R  L  C  T  D  Q  G  A  P  N  I  E  V  L  E  K :   L  F  N  A  I  D  E  N  E  D  G  H  L  S  R  T  E  L  K  A  L  V  V  G  I  R  L  E  E  I  N  L  H  E  N  D  A  V  E  K  L  M  K  D  F  D  T  S  H  D  H  Q  V  E  M  S  E  F  I  A  G  V  T  K  W  L  T  E  A  R  G  S  E  A  P  S  P  E  A  G  P  D  T  M  K  Y  L  D  D  L  H  E  :  Q  T  R  R  E  H  H  F  L  G  D  Q  S  D  E  S  V  E  T  V  E  N  P  R  S  T  A  I  K  A  V  L  L  L  L  L  G  T  V  I  A  A  V  F  A  D  P  L  V  D  A  V  N  N  F  S  S  A  T  S  I  P  S  F  F  I  S  F  I  A  L  P  L  A  T  N  S  S  E  A  V  S  A  I  I  F  A  S  R  K  K  L  R  S  A  S  L  T  F  S  E  :  L  Y  G  A  V  T  M  N  N  L  L  C  L  S  V  F  L  A  L  V  Y  I  R  G  L  T  W  D  F  S  S  E  V  L  V  I  L  I  V  C  V  V  V  G  V  F  A  S  V  R  S  T  F  P  L  W  T  S  L  L  A  F  L  L  Y  P  F  S  L  V  L  V  Y  V  L  D  Y  K  F  G  W  S  *  S  W  T  T  L  F  V  E  L  V  C  I  F  *  A  T  A  H  F  S  R  S  W  I  F  *  *  N  F  S  N  L  K  T  E  V  I  C  L  L  T  :  R  Q  R  H  N  K :   *  M  L  I  W  R  S  G  C  R  R  S  Q   : R  A  S  L  E  K  R  V  K  K   </first_frame>
            <second_frame>  R  I  Q  L  D  G :   S  F  S  L  G  Y  R  V  D  V  L  L  M  *  N  I  N  M  L  Y  Q  E  F  *  D  S  *  E  C  V  H  W  G  G  F  A  Q  T  R  E  H  Q  I  *  K  F  *  K   : S  Y  S  T  Q  L  M  K  M  R  M  G  I  F  P  V  L  N  *  K  L  W  *  *  E  S  V  W  R  R  *  T  Y  M  R  M  M  L  *  K  N  *  *  R  T  S  I  L  H  M  I  I  K  L  K  C  P  S  S  L  L  E  L  Q  N  G  L  L  R  P  G  V  P  R  L  L  L  L  K  L  V  L  I  Q  *  S  T  S  M  T  C  M  S :   K  Q  G  E  N  T  I  S  *  G  I  K  V  T  K  V  L  R  L  L  R  I  L  D  Q  L  Q  L  R  L  F  Y  C  F  C  W  V  L  S  L  L  P  S  L  L  I  L  W  L  M  L  S  I  I  S  L  V  P  Q  A  F  L  L  S  S  S  H  S  L  L  C  H  W  R  P  T  P  V  R  R  C  Q  L  L  S  L  L  A  G  K  S  *  D  L  H  H  *  H  F  L  S :   C  M  E  Q  *  Q  *  T  I  S  F  V  Y  Q  S  S  W  L  S  S  I  S  E  D  *  H  G  T  S  R  L  K  S  W  L  F  *  L  S  V  L  S  W  G  S  L  Q  A  S  E  A  P  F  L  F  G  L  P  C  *  L  F  Y  F  T  P  S  L  S  Y  L  Y  M  F  L  T  T  N  L  V  G  L  S  L  G  R  L  F  L  L  N  L  Y  A  S  F  E  L  R  H  T  L  V  A  L  G  F  S  S  R  T  S  V  T  *  K  L  K  S  F  V  Y  L  Q :   D  R  D  T  T   : N  E  C  *  Y  G  E  A  A  V  G  G  A  N  :  E  L  L  W  R  K  E  *  K  K  </second_frame>
            <third_frame>   G  F  S  L  T   : G  L  S  A  L  D  T  E  *  T  S  C  L  C  K  T  *  T  C  Y  I  R  S  F  E  T  V  K  N  A  C  I  G  E  A  L  H  R  P  G  S  T  K  Y  R  S  F  R  K  :  A  I  Q  R  N  *  *  K  *  G  W  A  S  F  P  Y  *  I  K  S  S  G  S  R  N  P  F  G  G  D  K  L  T  *  E  *  C  C  R  K  T  D  E  G  L  R  Y  F  T  *  S  S  S  *  N  V  R  V  H  C  W  S  Y  K  M  A  Y  *  G  Q  G  F  R  G  S  F  S  *  S  W  S  *  Y  N  E  V  P  R  *  L  A  *   : A  N  K  E  R  T  P  F  L  R  G  S  K  *  R  K  C  *  D  C  *  E  S  *  I  N  C  N  *  G  C  S  T  A  F  A  G  Y  C  H  C  C  R  L  C  *  S  S  G  *  C  C  Q  *  F  L  *  C  H  K  H  S  F  F  L  H  L  I  H  C  S  A  T  G  D  Q  L  Q  *  G  G  V  S  Y  Y  L  C  *  P  E  K  V  E  I  C  I  I  N  I  F  *   : V  V  W  S  S  D  N  E  Q  S  P  L  S  I  S  L  P  G  S  R  L  Y  Q  R  I  D  M  G  L  L  V  *  S  L  G  Y  S  N  C  L  C  C  R  G  G  L  C  K  R  P  K  H  L  S  S  L  D  F  L  A  S  F  S  T  L  P  L  L  S  R  T  C  I  C  S  *  L  Q  I  W  L  V  L  V  L  D  D  S  F  C  *  T  C  M  H  L  L  S  Y  G  T  L  *  S  L  L  D  F  L  V  E  L  Q  *  L  E  N  *  S  H  L  F  T  Y   : K  T  E  T  Q  Q  :  M  N  A  D  M  E  K  R  L  *  E  E  P  T :   S  F  S  G  E  K  S  K  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73414" stop="73416"/>
                    <exon start="74320" stop="74465"/>
                    <exon start="74543" stop="74819"/>
                    <exon start="74896" stop="75198"/>
                    <exon start="75525" stop="75773"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>975</number_coding_nucleotides>
                  <number_encoded_amino_acids>325</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVFQPWIQSRRLAYVKHKHVISGVLRQLRMRALGRLCTDQGAPNIEVLEKLFNAIDENEDGHLSRTELKALVVGIRLEEINLHENDAVEKLMKDFDTSHDHQVEMSEFIAGVTKWLTEARGSEAPSPEAGPDTMKYLDDLHEQTRREHHFLGDQSDESVETVENPRSTAIKAVLLLLLGTVIAAVFADPLVDAVNNFSSATSIPSFFISFIALPLATNSSEAVSAIIFASRKKLRSASLTFSELYGAVTMNNLLCLSVFLALVYIRGLTWDFSSEVLVILIVCVVVGVFASVRSTFPLWTSLLAFLLYPFSLVLVYVLDYKFGWS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="79278" PGL_stop="76835"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79278" e_stop="78697"/>
            <exon e_start="78578" e_stop="78462"/>
            <exon e_start="77563" e_stop="77394"/>
            <exon e_start="77313" e_stop="77127"/>
            <exon e_start="77029" e_stop="76835"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.994" e_score="0.995"/>
          <exon-intron don_prob="0.846" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.885" acc_prob="0.668" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="79278" e_stop="78697" e_length="582"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.994">
            <gDNA_intron_boundary i_start="78696" i_stop="78579" i_length="118"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78578" e_stop="78462" e_length="117"/>
          </exon>
          <intron i_serial="2" don_prob="0.846" acc_prob="0.999">
            <gDNA_intron_boundary i_start="78461" i_stop="77564" i_length="898"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="77563" e_stop="77394" e_length="170"/>
          </exon>
          <intron i_serial="3" don_prob="0.885" acc_prob="0.668">
            <gDNA_intron_boundary i_start="77393" i_stop="77314" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="77313" e_stop="77127" e_length="187"/>
          </exon>
          <intron i_serial="4" don_prob="0.936" acc_prob="0.997">
            <gDNA_intron_boundary i_start="77126" i_stop="77030" i_length="97"/>
          </intron>
          <exon e_serial="5" e_score="0.985">
            <gDNA_exon_boundary e_start="77029" e_stop="76835" e_length="195"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79278" stop="78697"/>
              <exon start="78578" stop="78462"/>
              <exon start="77563" stop="77394"/>
              <exon start="77313" stop="77127"/>
              <exon start="77029" stop="76934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78889" stop="78697"/>
              <exon start="78578" stop="78462"/>
              <exon start="77563" stop="77394"/>
              <exon start="77313" stop="77127"/>
              <exon start="77029" stop="76835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337258" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTACGAGTAGAGGATCGAAAAAAGTGAAGCAGAAAAAAATACCACAAAGAGGACTTGGTGTTGCTCAACTTGAAAGGATTAGAATGGAAGGGGAGAAAAAACATGAAAAAGATGCAAACTTTCAAACACCTAATGTTTTGGTACCAAATTCAGTTCATTCTACCAAAACTATGTCAAAATGCTTAGCTGTTGAAGGTTCTAGTTTTAGGCCTAGTTCAATCACTTTACCACCACCATCAACAATGGATCTGCTTTCGAAAAATAGTGTCTTTAGACCAGATCTGTCTGCCTTAGTTCTTGATGGTTTCCGTCCCAAGACTTTACAATCATCAAAACCAATGAACATGGGTGGAGGGGAGTTAAGTTGGTCGTCTGTTTCGGGTCCAGGGAGTGATAAATGTCCTAAATTGTGGAGTTGTGAGTACAGTCCTGAAAGAGAAAGCAAACAGGGAAATCGTCATGGTGTTGTTTTCGGGGCTAATGTAGATTTGCCAAATGAACTGCATAACCCCATTTTACCTCTACCCAGTGTGCTGCAAAGATCACAACAATATCAGCAACCTTCTTGTTCTTCATCAATG : ATGAATATCTCATCAGGGATTTCATCATCATCTGTACTAAATTATCAGATGGAGCCCCCTTCAAACCAAAATTATTATTCGTGTAATTATTTACCTCTGTGGCCTGAAGATGTGAAG : ATGGTTGGCATGAAGAGACCATATCCCTTCACTCCAGAGTTTCCACCAGTCCCTACATTTCACTGCAAATTTCCTCCAGCCTATGTTAACCTTGCATCGAGATCACCTGAATCAGCTTCCTGCAGCAATGAATGTGCAGCCAGTTTAGAATCAGGAAATTTGCTCAAAAG : AGAAGCTCCTTCAGGATCAAGGACTCTATCCGAGTCCAAACCAAGGGATGTTATCAGGCAAAATAAAGCTCTCAATGGAGATTTTCTCACGTTGGCTCCTCCTACAGCCGCTTCTCCATATCAGCATTCATCTAATTCAAACCTTCAGAGTCTAGAGAGATTTAGATTGGAATCAGTGACTTGTCAG : GGAGTTGCTGAAGAACCTACTACAACAAGCTCAGCCCTAAGCAAATCAGTTCAACAATCCATCTATGGATTCTTCCCAACTGCCAAGGTACAAATCAGCCAAGAAGGAACAAACAAACGCAATTGCCATGTTGAAGTAGGAGGAAACATTGATCTCAATCTGAAGCTGTAGAAGTTAGTCATTACACATGGTTGT</gDNA_template>
            <first_frame> A  T  S  R  G  S  K  K  V  K  Q  K  K  I  P  Q  R  G  L  G  V  A  Q  L  E  R  I  R  M  E  G  E  K  K  H  E  K  D  A  N  F  Q  T  P  N  V  L  V  P  N  S  V  H  S  T  K  T  M  S  K  C  L  A  V  E  G  S  S  F  R  P  S  S  I  T  L  P  P  P  S  T  M  D  L  L  S  K  N  S  V  F  R  P  D  L  S  A  L  V  L  D  G  F  R  P  K  T  L  Q  S  S  K  P  M  N  M  G  G  G  E  L  S  W  S  S  V  S  G  P  G  S  D  K  C  P  K  L  W  S  C  E  Y  S  P  E  R  E  S  K  Q  G  N  R  H  G  V  V  F  G  A  N  V  D  L  P  N  E  L  H  N  P  I  L  P  L  P  S  V  L  Q  R  S  Q  Q  Y  Q  Q  P  S  C  S  S  S  M  :  M  N  I  S  S  G  I  S  S  S  S  V  L  N  Y  Q  M  E  P  P  S  N  Q  N  Y  Y  S  C  N  Y  L  P  L  W  P  E  D  V  K  :  M  V  G  M  K  R  P  Y  P  F  T  P  E  F  P  P  V  P  T  F  H  C  K  F  P  P  A  Y  V  N  L  A  S  R  S  P  E  S  A  S  C  S  N  E  C  A  A  S  L  E  S  G  N  L  L  K  R :   E  A  P  S  G  S  R  T  L  S  E  S  K  P  R  D  V  I  R  Q  N  K  A  L  N  G  D  F  L  T  L  A  P  P  T  A  A  S  P  Y  Q  H  S  S  N  S  N  L  Q  S  L  E  R  F  R  L  E  S  V  T  C  Q  :  G  V  A  E  E  P  T  T  T  S  S  A  L  S  K  S  V  Q  Q  S  I  Y  G  F  F  P  T  A  K  V  Q  I  S  Q  E  G  T  N  K  R  N  C  H  V  E  V  G  G  N  I  D  L  N  L  K  L  *  K  L  V  I  T  H  G  C </first_frame>
            <second_frame>  L  R  V  E  D  R  K  K  *  S  R  K  K  Y  H  K  E  D  L  V  L  L  N  L  K  G  L  E  W  K  G  R  K  N  M  K  K  M  Q  T  F  K  H  L  M  F  W  Y  Q  I  Q  F  I  L  P  K  L  C  Q  N  A  *  L  L  K  V  L  V  L  G  L  V  Q  S  L  Y  H  H  H  Q  Q  W  I  C  F  R  K  I  V  S  L  D  Q  I  C  L  P  *  F  L  M  V  S  V  P  R  L  Y  N  H  Q  N  Q  *  T  W  V  E  G  S  *  V  G  R  L  F  R  V  Q  G  V  I  N  V  L  N  C  G  V  V  S  T  V  L  K  E  K  A  N  R  E  I  V  M  V  L  F  S  G  L  M  *  I  C  Q  M  N  C  I  T  P  F  Y  L  Y  P  V  C  C  K  D  H  N  N  I  S  N  L  L  V  L  H  Q  * :   *  I  S  H  Q  G  F  H  H  H  L  Y  *  I  I  R  W  S  P  L  Q  T  K  I  I  I  R  V  I  I  Y  L  C  G  L  K  M  *  R :   W  L  A  *  R  D  H  I  P  S  L  Q  S  F  H  Q  S  L  H  F  T  A  N  F  L  Q  P  M  L  T  L  H  R  D  H  L  N  Q  L  P  A  A  M  N  V  Q  P  V  *  N  Q  E  I  C  S  K   : E  K  L  L  Q  D  Q  G  L  Y  P  S  P  N  Q  G  M  L  S  G  K  I  K  L  S  M  E  I  F  S  R  W  L  L  L  Q  P  L  L  H  I  S  I  H  L  I  Q  T  F  R  V  *  R  D  L  D  W  N  Q  *  L  V  R :   E  L  L  K  N  L  L  Q  Q  A  Q  P  *  A  N  Q  F  N  N  P  S  M  D  S  S  Q  L  P  R  Y  K  S  A  K  K  E  Q  T  N  A  I  A  M  L  K  *  E  E  T  L  I  S  I  *  S  C  R  S  *  S  L  H  M  V   </second_frame>
            <third_frame>   Y  E  *  R  I  E  K  S  E  A  E  K  N  T  T  K  R  T  W  C  C  S  T  *  K  D  *  N  G  R  G  E  K  T  *  K  R  C  K  L  S  N  T  *  C  F  G  T  K  F  S  S  F  Y  Q  N  Y  V  K  M  L  S  C  *  R  F  *  F  *  A  *  F  N  H  F  T  T  T  I  N  N  G  S  A  F  E  K  *  C  L  *  T  R  S  V  C  L  S  S  *  W  F  P  S  Q  D  F  T  I  I  K  T  N  E  H  G  W  R  G  V  K  L  V  V  C  F  G  S  R  E  *  *  M  S  *  I  V  E  L  *  V  Q  S  *  K  R  K  Q  T  G  K  S  S  W  C  C  F  R  G  *  C  R  F  A  K  *  T  A  *  P  H  F  T  S  T  Q  C  A  A  K  I  T  T  I  S  A  T  F  L  F  F  I  N   : D  E  Y  L  I  R  D  F  I  I  I  C  T  K  L  S  D  G  A  P  F  K  P  K  L  L  F  V  *  L  F  T  S  V  A  *  R  C  E   : D  G  W  H  E  E  T  I  S  L  H  S  R  V  S  T  S  P  Y  I  S  L  Q  I  S  S  S  L  C  *  P  C  I  E  I  T  *  I  S  F  L  Q  Q  *  M  C  S  Q  F  R  I  R  K  F  A  Q  K  :  R  S  S  F  R  I  K  D  S  I  R  V  Q  T  K  G  C  Y  Q  A  K  *  S  S  Q  W  R  F  S  H  V  G  S  S  Y  S  R  F  S  I  S  A  F  I  *  F  K  P  S  E  S  R  E  I  *  I  G  I  S  D  L  S   : G  S  C  *  R  T  Y  Y  N  K  L  S  P  K  Q  I  S  S  T  I  H  L  W  I  L  P  N  C  Q  G  T  N  Q  P  R  R  N  K  Q  T  Q  L  P  C  *  S  R  R  K  H  *  S  Q  S  E  A  V  E  V  S  H  Y  T  W  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79278" stop="78697"/>
                    <exon start="78578" stop="78462"/>
                    <exon start="77563" stop="77394"/>
                    <exon start="77313" stop="77127"/>
                    <exon start="77029" stop="76859"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1224</number_coding_nucleotides>
                  <number_encoded_amino_acids>408</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ATSRGSKKVKQKKIPQRGLGVAQLERIRMEGEKKHEKDANFQTPNVLVPNSVHSTKTMSKCLAVEGSSFRPSSITLPPPSTMDLLSKNSVFRPDLSALVLDGFRPKTLQSSKPMNMGGGELSWSSVSGPGSDKCPKLWSCEYSPERESKQGNRHGVVFGANVDLPNELHNPILPLPSVLQRSQQYQQPSCSSSMMNISSGISSSSVLNYQMEPPSNQNYYSCNYLPLWPEDVKMVGMKRPYPFTPEFPPVPTFHCKFPPAYVNLASRSPESASCSNECAASLESGNLLKREAPSGSRTLSESKPRDVIRQNKALNGDFLTLAPPTAASPYQHSSNSNLQSLERFRLESVTCQGVAEEPTTTSSALSKSVQQSIYGFFPTAKVQISQEGTNKRNCHVEVGGNIDLNLKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="78741" e_stop="78697"/>
            <exon e_start="78578" e_stop="77916"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78741" e_stop="78697" e_length="45"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.994">
            <gDNA_intron_boundary i_start="78696" i_stop="78579" i_length="118"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="78578" e_stop="77916" e_length="663"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78741" stop="78697"/>
              <exon start="78578" stop="77916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78739" stop="78697"/>
              <exon start="78578" stop="78076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337260" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAGATCACAACAATATCAGCAACCTTCTTGTTCTTCATCAATG : ATGAATATCTCATCAGGGATTTCATCATCATCTGTACTAAATTATCAGATGGAGCCCCCTTCAAACCAAAATTATTATTCGTGTAATTATTTACCTCTGTGGCCTGAAGATGTGAAGGTAATTTCTTTTATTCTGCGTGTTAGTCACTAATATATAGAAATCAATTTTCATAATGCTCTCTTCTGTCAAAAGGCTGAAATACACTTTACCTGGATATCCTATTGATTCTAGTAAGGATCTTAGTTTGTACAGAACCGTTATGTGAAATGTTCTTTTAATTATAAAGATGGATACATGTCATTTACATCCAATGTGTTGAACATCTCTTTTCTTCGAACTTGATAGTAGAAAACATTATTACACACCTTCTACTGCCAAAACAAGGTAAAGGAGCTTCTCTTTGTGGCCCTAAACTAATATTCAGATACTTGATGAAAAGAGCATCTTAAAAGCGAGAAGAGATGCTCACTCAGCTCAGGTTACACCCTCCACTCCCCACAAATTGTAGGATAGCTCCATAGTTGTCCCTTTGTTGCTCAAACAGTTCTCGTGTTCTTTCATCTAAACAAGCTATCTGAGGATAATGACTTAAAAACCAAGAGACATGTCACAATCACAATTCACAAATGTGTTACACATGTATGCAATCATTATTTCAGTGCG</gDNA_template>
            <first_frame> Q  R  S  Q  Q  Y  Q  Q  P  S  C  S  S  S  M  :  M  N  I  S  S  G  I  S  S  S  S  V  L  N  Y  Q  M  E  P  P  S  N  Q  N  Y  Y  S  C  N  Y  L  P  L  W  P  E  D  V  K  V  I  S  F  I  L  R  V  S  H  *  Y  I  E  I  N  F  H  N  A  L  F  C  Q  K  A  E  I  H  F  T  W  I  S  Y  *  F  *  *  G  S  *  F  V  Q  N  R  Y  V  K  C  S  F  N  Y  K  D  G  Y  M  S  F  T  S  N  V  L  N  I  S  F  L  R  T  *  *  *  K  T  L  L  H  T  F  Y  C  Q  N  K  V  K  E  L  L  F  V  A  L  N  *  Y  S  D  T  *  *  K  E  H  L  K  S  E  K  R  C  S  L  S  S  G  Y  T  L  H  S  P  Q  I  V  G  *  L  H  S  C  P  F  V  A  Q  T  V  L  V  F  F  H  L  N  K  L  S  E  D  N  D  L  K  T  K  R  H  V  T  I  T  I  H  K  C  V  T  H  V  C  N  H  Y  F  S  A </first_frame>
            <second_frame>  K  D  H  N  N  I  S  N  L  L  V  L  H  Q  * :   *  I  S  H  Q  G  F  H  H  H  L  Y  *  I  I  R  W  S  P  L  Q  T  K  I  I  I  R  V  I  I  Y  L  C  G  L  K  M  *  R  *  F  L  L  F  C  V  L  V  T  N  I  *  K  S  I  F  I  M  L  S  S  V  K  R  L  K  Y  T  L  P  G  Y  P  I  D  S  S  K  D  L  S  L  Y  R  T  V  M  *  N  V  L  L  I  I  K  M  D  T  C  H  L  H  P  M  C  *  T  S  L  F  F  E  L  D  S  R  K  H  Y  Y  T  P  S  T  A  K  T  R  *  R  S  F  S  L  W  P  *  T  N  I  Q  I  L  D  E  K  S  I  L  K  A  R  R  D  A  H  S  A  Q  V  T  P  S  T  P  H  K  L  *  D  S  S  I  V  V  P  L  L  L  K  Q  F  S  C  S  F  I  *  T  S  Y  L  R  I  M  T  *  K  P  R  D  M  S  Q  S  Q  F  T  N  V  L  H  M  Y  A  I  I  I  S  V   </second_frame>
            <third_frame>   K  I  T  T  I  S  A  T  F  L  F  F  I  N   : D  E  Y  L  I  R  D  F  I  I  I  C  T  K  L  S  D  G  A  P  F  K  P  K  L  L  F  V  *  L  F  T  S  V  A  *  R  C  E  G  N  F  F  Y  S  A  C  *  S  L  I  Y  R  N  Q  F  S  *  C  S  L  L  S  K  G  *  N  T  L  Y  L  D  I  L  L  I  L  V  R  I  L  V  C  T  E  P  L  C  E  M  F  F  *  L  *  R  W  I  H  V  I  Y  I  Q  C  V  E  H  L  F  S  S  N  L  I  V  E  N  I  I  T  H  L  L  L  P  K  Q  G  K  G  A  S  L  C  G  P  K  L  I  F  R  Y  L  M  K  R  A  S  *  K  R  E  E  M  L  T  Q  L  R  L  H  P  P  L  P  T  N  C  R  I  A  P  *  L  S  L  C  C  S  N  S  S  R  V  L  S  S  K  Q  A  I  *  G  *  *  L  K  N  Q  E  T  C  H  N  H  N  S  Q  M  C  Y  T  C  M  Q  S  L  F  Q  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78741" stop="78697"/>
                    <exon start="78578" stop="78429"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QRSQQYQQPSCSSSMMNISSGISSSSVLNYQMEPPSNQNYYSCNYLPLWPEDVKVISFILRVSH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="96315" PGL_stop="95238"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96315" e_stop="95609"/>
            <exon e_start="95527" e_stop="95238"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96315" e_stop="95609" e_length="707"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="95608" i_stop="95528" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="95527" e_stop="95238" e_length="290"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96315" stop="95609"/>
              <exon start="95527" stop="95238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324434" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTTATGCCTCATTCTTTAGATTCTGATGCGATTTCTGATACCATCAAATCATTTTTCCCAATGGGAGGTAGTGGTTCAAATGAAGGTAATTCTTTCCAGAGTTTTCAACAACATAATTTGATGTCAAGAAGCCAAGATTTGAAGCTTTCTTTACAATCTTTTCAAGATCCACAAGCTCAGTTTGAAGCATCAAATTTCTTTACTGGATTTGATGCTTCAGTGTGGCCTCAGCACCAGCAGCAGCCGGTTGAACTTGGTCGACTGGCGGCTGCTCGTGGAGACATTGGTGGCGGGGCAATTGCTGGAGCAGGTAGTTATCTGTTTAACTCTCAGCCTGCCCCGCCGCTATTACAACAATTGTTCACTCAAAATCAGTTTTTGTCTCAGAGGGGACCCCTTCAGTCCAGTTACTCACCTTCGATTCGTGCATGGATAGATCCATCAGCGATTGCTATCGCCACAGCTGATCCAATTCACCAAAACCAAAACCATCATCAAGCTGTGTTTCCTATGTATTCAACATCACTTTCTGGCATCGGATTCGCCTCAGAATTAGGCGGATTCTCTGGCTTTCGCATTCCTACACGAATCCAAGGTGAAATAGAGGAGGAGCATGATGGTGTTTCCGACAAACCATCCTCTGCTTCCTCTGATTCTCGTCATTGAATCAGCTCGGAAACACAATCTCCCATTATAACCTGACAG : GAACAAGTACTATATTTGAAGATGGAAATGGGAAAAGACAAGTCAGGGAAAGCGCGATAATCCATTTTTATCGAGTCTGATTCAGTGAGAATGCACCGCGGAAGAAGAATCCTGAGCATAGTTTCAGGTTTTTTTCTAAGATTAAATAGCGGTGTAATGTTCATGTATAAGTGTGTTTTTCTGTTGCTAAGTTGTTGTTGTTGTTGTTGTTGTGTGCTTATTATCTTCAGTTCATTAGAACAAGTAATTTTCTCTTGAATGACAATTATTATCAACCTGATTGATTTGGT</gDNA_template>
            <first_frame> V  L  C  L  I  L  *  I  L  M  R  F  L  I  P  S  N  H  F  S  Q  W  E  V  V  V  Q  M  K  V  I  L  S  R  V  F  N  N  I  I  *  C  Q  E  A  K  I  *  S  F  L  Y  N  L  F  K  I  H  K  L  S  L  K  H  Q  I  S  L  L  D  L  M  L  Q  C  G  L  S  T  S  S  S  R  L  N  L  V  D  W  R  L  L  V  E  T  L  V  A  G  Q  L  L  E  Q  V  V  I  C  L  T  L  S  L  P  R  R  Y  Y  N  N  C  S  L  K  I  S  F  C  L  R  G  D  P  F  S  P  V  T  H  L  R  F  V  H  G  *  I  H  Q  R  L  L  S  P  Q  L  I  Q  F  T  K  T  K  T  I  I  K  L  C  F  L  C  I  Q  H  H  F  L  A  S  D  S  P  Q  N  *  A  D  S  L  A  F  A  F  L  H  E  S  K  V  K  *  R  R  S  M  M  V  F  P  T  N  H  P  L  L  P  L  I  L  V  I  E  S  A  R  K  H  N  L  P  L  *  P  D  R :   N  K  Y  Y  I  *  R  W  K  W  E  K  T  S  Q  G  K  R  D  N  P  F  L  S  S  L  I  Q  *  E  C  T  A  E  E  E  S  *  A  *  F  Q  V  F  F  *  D  *  I  A  V  *  C  S  C  I  S  V  F  F  C  C  *  V  V  V  V  V  V  V  V  C  L  L  S  S  V  H  *  N  K  *  F  S  L  E  *  Q  L  L  S  T  *  L  I  W  </first_frame>
            <second_frame>  F  Y  A  S  F  F  R  F  *  C  D  F  *  Y  H  Q  I  I  F  P  N  G  R  *  W  F  K  *  R  *  F  F  P  E  F  S  T  T  *  F  D  V  K  K  P  R  F  E  A  F  F  T  I  F  S  R  S  T  S  S  V  *  S  I  K  F  L  Y  W  I  *  C  F  S  V  A  S  A  P  A  A  A  G  *  T  W  S  T  G  G  C  S  W  R  H  W  W  R  G  N  C  W  S  R  *  L  S  V  *  L  S  A  C  P  A  A  I  T  T  I  V  H  S  K  S  V  F  V  S  E  G  T  P  S  V  Q  L  L  T  F  D  S  C  M  D  R  S  I  S  D  C  Y  R  H  S  *  S  N  S  P  K  P  K  P  S  S  S  C  V  S  Y  V  F  N  I  T  F  W  H  R  I  R  L  R  I  R  R  I  L  W  L  S  H  S  Y  T  N  P  R  *  N  R  G  G  A  *  W  C  F  R  Q  T  I  L  C  F  L  *  F  S  S  L  N  Q  L  G  N  T  I  S  H  Y  N  L  T   : G  T  S  T  I  F  E  D  G  N  G  K  R  Q  V  R  E  S  A  I  I  H  F  Y  R  V  *  F  S  E  N  A  P  R  K  K  N  P  E  H  S  F  R  F  F  S  K  I  K  *  R  C  N  V  H  V  *  V  C  F  S  V  A  K  L  L  L  L  L  L  L  C  A  Y  Y  L  Q  F  I  R  T  S  N  F  L  L  N  D  N  Y  Y  Q  P  D  *  F  G </second_frame>
            <third_frame>   F  M  P  H  S  L  D  S  D  A  I  S  D  T  I  K  S  F  F  P  M  G  G  S  G  S  N  E  G  N  S  F  Q  S  F  Q  Q  H  N  L  M  S  R  S  Q  D  L  K  L  S  L  Q  S  F  Q  D  P  Q  A  Q  F  E  A  S  N  F  F  T  G  F  D  A  S  V  W  P  Q  H  Q  Q  Q  P  V  E  L  G  R  L  A  A  A  R  G  D  I  G  G  G  A  I  A  G  A  G  S  Y  L  F  N  S  Q  P  A  P  P  L  L  Q  Q  L  F  T  Q  N  Q  F  L  S  Q  R  G  P  L  Q  S  S  Y  S  P  S  I  R  A  W  I  D  P  S  A  I  A  I  A  T  A  D  P  I  H  Q  N  Q  N  H  H  Q  A  V  F  P  M  Y  S  T  S  L  S  G  I  G  F  A  S  E  L  G  G  F  S  G  F  R  I  P  T  R  I  Q  G  E  I  E  E  E  H  D  G  V  S  D  K  P  S  S  A  S  S  D  S  R  H  *  I  S  S  E  T  Q  S  P  I  I  T  *  Q  :  E  Q  V  L  Y  L  K  M  E  M  G  K  D  K  S  G  K  A  R  *  S  I  F  I  E  S  D  S  V  R  M  H  R  G  R  R  I  L  S  I  V  S  G  F  F  L  R  L  N  S  G  V  M  F  M  Y  K  C  V  F  L  L  L  S  C  C  C  C  C  C  C  V  L  I  I  F  S  S  L  E  Q  V  I  F  S  *  M  T  I  I  I  N  L  I  D  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96313" stop="95648"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>663</number_coding_nucleotides>
                  <number_encoded_amino_acids>221</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FMPHSLDSDAISDTIKSFFPMGGSGSNEGNSFQSFQQHNLMSRSQDLKLSLQSFQDPQAQFEASNFFTGFDASVWPQHQQQPVELGRLAAARGDIGGGAIAGAGSYLFNSQPAPPLLQQLFTQNQFLSQRGPLQSSYSPSIRAWIDPSAIAIATADPIHQNQNHHQAVFPMYSTSLSGIGFASELGGFSGFRIPTRIQGEIEEEHDGVSDKPSSASSDSRH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95467" stop="95270"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIFIESDSVRMHRGRRILSIVSGFFLRLNSGVMFMYKCVFLLLSCCCCCCCVLIIFSSLEQVIFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="108387" PGL_stop="108032"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108387" e_stop="108032"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="108387" e_stop="108032" e_length="356"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108387" stop="108032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331960" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTATTCTCCATGATCTGATTGCTGAAGATATGGTAGTAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTGCCTCCTTCGTGGAACGATTTCAAGAATTATCTAAAGCATAAGCGTAAAGAAATGAAGCTTGAAGATCTTGTGATTCGTCTCAAGATTGAGGAAGATAACAAAAATGCCAAAAAAAAGTTGCGTAAGAGTTCAACAATCATTGGAGTTAATATTGCTGAAGATGATCCTACCAAAGACAAAAAGAAAAAAAAGTCCAACGGGTAGAAGTCAGAATAGGCCAAGAAGAAATTCAAAGGCAACTGTTATAATTGTGGCAAGGCTGGTCATAGGTCTTCTGA</gDNA_template>
            <first_frame> F  I  L  H  D  L  I  A  E  D  M  V  V  N  E  A  F  Q  V  A  A  M  I  E  K  L  P  P  S  W  N  D  F  K  N  Y  L  K  H  K  R  K  E  M  K  L  E  D  L  V  I  R  L  K  I  E  E  D  N  K  N  A  K  K  K  L  R  K  S  S  T  I  I  G  V  N  I  A  E  D  D  P  T  K  D  K  K  K  K  K  S  N  G  *  K  S  E  *  A  K  K  K  F  K  G  N  C  Y  N  C  G  K  A  G  H  R  S  S   </first_frame>
            <second_frame>  L  F  S  M  I  *  L  L  K  I  W  *  *  M  K  L  F  K  W  L  Q  *  S  R  S  C  L  L  R  G  T  I  S  R  I  I  *  S  I  S  V  K  K  *  S  L  K  I  L  *  F  V  S  R  L  R  K  I  T  K  M  P  K  K  S  C  V  R  V  Q  Q  S  L  E  L  I  L  L  K  M  I  L  P  K  T  K  R  K  K  S  P  T  G  R  S  Q  N  R  P  R  R  N  S  K  A  T  V  I  I  V  A  R  L  V  I  G  L  L  </second_frame>
            <third_frame>   Y  S  P  *  S  D  C  *  R  Y  G  S  K  *  S  F  S  S  G  C  N  D  R  E  V  A  S  F  V  E  R  F  Q  E  L  S  K  A  *  A  *  R  N  E  A  *  R  S  C  D  S  S  Q  D  *  G  R  *  Q  K  C  Q  K  K  V  A  *  E  F  N  N  H  W  S  *  Y  C  *  R  *  S  Y  Q  R  Q  K  E  K  K  V  Q  R  V  E  V  R  I  G  Q  E  E  I  Q  R  Q  L  L  *  L  W  Q  G  W  S  *  V  F  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108387" stop="108106"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FILHDLIAEDMVVNEAFQVAAMIEKLPPSWNDFKNYLKHKRKEMKLEDLVIRLKIEEDNKNAKKKLRKSSTIIGVNIAEDDPTKDKKKKKSNG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108236" stop="108033"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FVSRLRKITKMPKKSCVRVQQSLELILLKMILPKTKRKKSPTGRSQNRPRRNSKATVIIVARLVIGLL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="125066" PGL_stop="127131"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="125066" e_stop="125471"/>
            <exon e_start="126987" e_stop="127131"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="125066" e_stop="125471" e_length="406"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="1.000">
            <gDNA_intron_boundary i_start="125472" i_stop="126986" i_length="1515"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="126987" e_stop="127131" e_length="145"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125066" stop="125471"/>
              <exon start="126987" stop="127131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330938" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCAATGCTCTCTTTCGCTTTAGTCCATCTTCATCCTTCTTCTTCCCCAAACCCACAGTTCCATTTTCCCCACAAAAATCAAATTCTGCCAATTCAATCACTCAACTTTTCACCATTTACTGTAATACCCACAAAATTGCTGAGTAAACCCTCCTTCTCCCGCTTATTATCTTCGGTATCGTCGTCTTCTTTGGTTGCTGATGACTTTCAAGTGGAATTGGGTCGGTTATTGTCTTTGTTGCCGGAGGAAATGCGGCGAGGAGTTAGCGAACACCCGGAATATTCCAATTTAATTGAGGTGGTTATGGACTTAGGTCGTAAGCCACTTGCTCGCTTCCCTTCTGGAGATTTCATCTTATCCGATCAACCGATTACTTTGGGTGATCTTCAACAAGCTACCTCGCAG : GTTGGTGACTTTGCAGTTGACAATAGAGCTGGCATTAGCAGAACTTTACACCGAATTAGTGCTATTAGAAATCGGAAAGGTGCAATTATTGGTTTAACTTGTCGAGTTGGTCGTGCAATATCTGGAAGTGCAAACTCATTGCGAG</gDNA_template>
            <first_frame> S  N  A  L  F  R  F  S  P  S  S  S  F  F  F  P  K  P  T  V  P  F  S  P  Q  K  S  N  S  A  N  S  I  T  Q  L  F  T  I  Y  C  N  T  H  K  I  A  E  *  T  L  L  L  P  L  I  I  F  G  I  V  V  F  F  G  C  *  *  L  S  S  G  I  G  S  V  I  V  F  V  A  G  G  N  A  A  R  S  *  R  T  P  G  I  F  Q  F  N  *  G  G  Y  G  L  R  S  *  A  T  C  S  L  P  F  W  R  F  H  L  I  R  S  T  D  Y  F  G  *  S  S  T  S  Y  L  A   : G  W  *  L  C  S  *  Q  *  S  W  H  *  Q  N  F  T  P  N  *  C  Y  *  K  S  E  R  C  N  Y  W  F  N  L  S  S  W  S  C  N  I  W  K  C  K  L  I  A   </first_frame>
            <second_frame>  A  M  L  S  F  A  L  V  H  L  H  P  S  S  S  P  N  P  Q  F  H  F  P  H  K  N  Q  I  L  P  I  Q  S  L  N  F  S  P  F  T  V  I  P  T  K  L  L  S  K  P  S  F  S  R  L  L  S  S  V  S  S  S  S  L  V  A  D  D  F  Q  V  E  L  G  R  L  L  S  L  L  P  E  E  M  R  R  G  V  S  E  H  P  E  Y  S  N  L  I  E  V  V  M  D  L  G  R  K  P  L  A  R  F  P  S  G  D  F  I  L  S  D  Q  P  I  T  L  G  D  L  Q  Q  A  T  S  Q  :  V  G  D  F  A  V  D  N  R  A  G  I  S  R  T  L  H  R  I  S  A  I  R  N  R  K  G  A  I  I  G  L  T  C  R  V  G  R  A  I  S  G  S  A  N  S  L  R  </second_frame>
            <third_frame>   Q  C  S  L  S  L  *  S  I  F  I  L  L  L  P  Q  T  H  S  S  I  F  P  T  K  I  K  F  C  Q  F  N  H  S  T  F  H  H  L  L  *  Y  P  Q  N  C  *  V  N  P  P  S  P  A  Y  Y  L  R  Y  R  R  L  L  W  L  L  M  T  F  K  W  N  W  V  G  Y  C  L  C  C  R  R  K  C  G  E  E  L  A  N  T  R  N  I  P  I  *  L  R  W  L  W  T  *  V  V  S  H  L  L  A  S  L  L  E  I  S  S  Y  P  I  N  R  L  L  W  V  I  F  N  K  L  P  R  R :   L  V  T  L  Q  L  T  I  E  L  A  L  A  E  L  Y  T  E  L  V  L  L  E  I  G  K  V  Q  L  L  V  *  L  V  E  L  V  V  Q  Y  L  E  V  Q  T  H  C  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0021L02.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="125067" stop="125471"/>
                    <exon start="126987" stop="127130"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>549</number_coding_nucleotides>
                  <number_encoded_amino_acids>183</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AMLSFALVHLHPSSSPNPQFHFPHKNQILPIQSLNFSPFTVIPTKLLSKPSFSRLLSSVSSSSLVADDFQVELGRLLSLLPEEMRRGVSEHPEYSNLIEVVMDLGRKPLARFPSGDFILSDQPITLGDLQQATSQVGDFAVDNRAGISRTLHRISAIRNRKGAIIGLTCRVGRAISGSANSLR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 67 chains have been computed
$ 
$ memory statistics:
$ 150624 bytes spliced alignments in total
$ 20 spliced alignments have been stored
$ 7531 bytes was the average size of a spliced alignment
$ 22680 bytes predicted gene locations in total
$ 14 predicted gene locations have been stored
$ 1620 bytes was the average size of a predicted gene location
$ 22 megabytes was the average size of the backtrace matrix
$ 76 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-18 05:59:03
-->
