<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-18 02:31:41"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338433" ref_strand="+" ref_description="SGN-E338433 [cTOE-15-C18]">
      <seq>taaatatcctgaagataaacttttggagactagaacgaagatcatcactctctccgtactaacagacaacctctgcaaagagttgtacgattgcattgacaacgatttactgcttcctctacagcaggcgaatcataccatagctcattatagatccgagggagtggcgaaagcatcagaacttcctaattgacattccaccaacactaggcatgtgagcactctcaatcagaggcaagaaaagatgcacattccttttctcatgagctgatctacaattttatgctagagggtttgattactacagcatctaatattcttttgctacacttgatatgaatttagtctagattcttaactacatatagtttgagttgaagacaatgtatgaacattggttttcgtttggccatatcatatcatatattattataagtgggaagattcaaactgcaaagttgaattatcattttgtccctctacagttaataaatgagtacattgatattgcttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="-" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="7308" stop="5890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7008" g_stop="6925" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6924" i_stop="6623" i_length="302">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6622" g_stop="6182" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="525" r_length="441" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="-" ref_id="SGN-E338433" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7008" e_stop="6925"/>
          <exon e_start="6622" e_stop="6182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATATCCTGAAGATAAACTTTTGGAGACTAGAACGAAGATCATCACTCTCTCCGTACTAACAGACAACCTCTGCAAAGAGTTGTAAGTGTGCATCACATCTAATAAACTAGCTATGCATTATTTATATTTGCGTTAGGTTCTTCAAGTACATTGATATGTTAAAGAAGTCATCTACAGAAGGTCCTTTATATAACAATTCAGTTTCAAGGGAAACGAAACTCATGCTTTTCTAAACGAGTATCAACCATAATGCCCTTTGGTTAGAATCACAAGAAAGGCAAAAACAGTGATCTTTACTTGTGTTCTGTAGAAACTGACTGATCTGGATATTGCTAATGTGTCTACCAAGTGAGGCTTCATTCCTGGATTTTTTGTTTTTGCAGGTACGATTGCATTGACAACGATTTACTGCTTCCTCTACAGCAGGCGAATCATACCATAGCTCATTATAGATCCGAGGGAGTGGCGAAAGCATCAGAACTTCCTAATTGACATTCCACCAACACTAGGCATGTGAGCACTCTCAATCAGAGGCAAGAAAAGATGCACATTCCTTTTCTCATGAGCTGATCTACAATTTTATGCTAGAGGGTTTGATTACTACAGCATCTAATATTCTTTTGCTACACTTGATATGAATTTAGTCTAGATTCTTAACTACATATAGTTTGAGTTGAAGACAATGTATGAACATTGGTTTTCGTTTGGCCATATCATATCATATATTATTATAAGTGGGAAGATTCAAACTGCAAAGTTGAATTATCATTTTGTCCCTCTACAGTTAATAAATGAGTACATTGATATTGCTTTTAATCGTAATC</genome_strand>
        <mrna_strand>TAAATATCCTGAAGATAAACTTTTGGAGACTAGAACGAAGATCATCACTCTCTCCGTACTAACAGACAACCTCTGCAAAGAGTT..............................................................................................................................................................................................................................................................................................................GTACGATTGCATTGACAACGATTTACTGCTTCCTCTACAGCAGGCGAATCATACCATAGCTCATTATAGATCCGAGGGAGTGGCGAAAGCATCAGAACTTCCTAATTGACATTCCACCAACACTAGGCATGTGAGCACTCTCAATCAGAGGCAAGAAAAGATGCACATTCCTTTTCTCATGAGCTGATCTACAATTTTATGCTAGAGGGTTTGATTACTACAGCATCTAATATTCTTTTGCTACACTTGATATGAATTTAGTCTAGATTCTTAACTACATATAGTTTGAGTTGAAGACAATGTATGAACATTGGTTTTCGTTTGGCCATATCATATCATATATTATTATAAGTGGGAAGATTCAAACTGCAAAGTTGAATTATCATTTTGTCCCTCTACAGTTAATAAATGAGTACATTGATATTGCTTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338943" ref_strand="+" ref_description="SGN-E338943 [cTOE-21-L6]">
      <seq>gcgaatcataccatagctcatgatagatccgagggagtggcgaaagcatcacaacttcctaattgacattccaccaacactaggcatgtgagcactctcaatcagaggcaagaaaagatgcacattccttttctcatgagctgatctacaattttatgctacagggtttgattactacagcatctaatattcttttgctacactcgatatgaatttagtctagattcttaactacatatagcttgagttgaagacaatgtatgaacattggttttcgtttggccatatcatatcatatattattataagtgggaagattcaaactgcaaagttgaattatcattttgtccctctaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="-" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="6879" stop="5923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6579" g_stop="6223" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="-" ref_id="SGN-E338943" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6579" e_stop="6223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAATCATACCATAGCTCATTATAGATCCGAGGGAGTGGCGAAAGCATCAGAACTTCCTAATTGACATTCCACCAACACTAGGCATGTGAGCACTCTCAATCAGAGGCAAGAAAAGATGCACATTCCTTTTCTCATGAGCTGATCTACAATTTTATGCTAGAGGGTTTGATTACTACAGCATCTAATATTCTTTTGCTACACTTGATATGAATTTAGTCTAGATTCTTAACTACATATAGTTTGAGTTGAAGACAATGTATGAACATTGGTTTTCGTTTGGCCATATCATATCATATATTATTATAAGTGGGAAGATTCAAACTGCAAAGTTGAATTATCATTTTGTCCCTCTACA</genome_strand>
        <mrna_strand>GCGAATCATACCATAGCTCATGATAGATCCGAGGGAGTGGCGAAAGCATCACAACTTCCTAATTGACATTCCACCAACACTAGGCATGTGAGCACTCTCAATCAGAGGCAAGAAAAGATGCACATTCCTTTTCTCATGAGCTGATCTACAATTTTATGCTACAGGGTTTGATTACTACAGCATCTAATATTCTTTTGCTACACTCGATATGAATTTAGTCTAGATTCTTAACTACATATAGCTTGAGTTGAAGACAATGTATGAACATTGGTTTTCGTTTGGCCATATCATATCATATATTATTATAAGTGGGAAGATTCAAACTGCAAAGTTGAATTATCATTTTGTCCCTCTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375518" ref_strand="+" ref_description="SGN-E375518 [TUS-34-B6](-)">
      <seq>tggaggctgaagcaaacatgaagcaaaaactaaagtttgaagtgttgaaactcgaagcaagggaattgctatcaaaggacttcagctgggtagaaaatggatgtaatagactccttgaattgaggcgaattctctcctgttcctatccagtttcattttacgtttttgatcagacgctgttcaaggatgaaatgacacaaaaagatagggaaataaagaagaacctttttgaaaacctgcagcagcaacttgaaataaacgttgagagactttcgatgttcttggaagaaccatttgctaaatatcctgaagataaacttttggagactagaacgaagatcatcactctctccgtactaacagacaacctctgcaaagagttgtacgattgcattgacaacgatttactgcttcctctacagcaggcgaatcataccatagctcattatagatccgagggagtggcgaaagcatcagaacttcctaattgacattccaccaacactaggcatgtgagcactctcaatcagaggcaagaaaagatgcacattccttttctcatgagctgatctacaattttatgctagagggtttgattactacagcatctaatattcttttgctacacttgatatgaatttagtctagattcttaactacatatagtttgagttgaagacaatgtatgaacattggttttcgtttggccatatcatatcatatattattataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="-" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="7606" stop="5972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7306" g_stop="6925" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6924" i_stop="6623" i_length="302">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6622" g_stop="6272" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="733" r_length="351" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="-" ref_id="SGN-E375518" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7306" e_stop="6925"/>
          <exon e_start="6622" e_stop="6272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGGCTGAAGCAAACATGAAGCAAAAACTAAAGTTTGAAGTGTTGAAACTCGAAGCAAGGGAATTGCTATCAAAGGACTTCAGCTGGGTAGAAAATGGATGTAATAGACTCCTTGAATTGAGGCGAATTCTCTCCTGTTCCTATCCAGTTTCATTTTACGTTTTTGATCAGACGCTGTTCAAGGATGAAATGACACAAAAAGATAGGGAAATAAAGAAGAACCTTTTTGAAAACCTGCAGCAGCAACTTGAAATAAACGTTGAGAGACTTTCGATGTTCTTGGAAGAACCATTTGCTAAATATCCTGAAGATAAACTTTTGGAGACTAGAACGAAGATCATCACTCTCTCCGTACTAACAGACAACCTCTGCAAAGAGTTGTAAGTGTGCATCACATCTAATAAACTAGCTATGCATTATTTATATTTGCGTTAGGTTCTTCAAGTACATTGATATGTTAAAGAAGTCATCTACAGAAGGTCCTTTATATAACAATTCAGTTTCAAGGGAAACGAAACTCATGCTTTTCTAAACGAGTATCAACCATAATGCCCTTTGGTTAGAATCACAAGAAAGGCAAAAACAGTGATCTTTACTTGTGTTCTGTAGAAACTGACTGATCTGGATATTGCTAATGTGTCTACCAAGTGAGGCTTCATTCCTGGATTTTTTGTTTTTGCAGGTACGATTGCATTGACAACGATTTACTGCTTCCTCTACAGCAGGCGAATCATACCATAGCTCATTATAGATCCGAGGGAGTGGCGAAAGCATCAGAACTTCCTAATTGACATTCCACCAACACTAGGCATGTGAGCACTCTCAATCAGAGGCAAGAAAAGATGCACATTCCTTTTCTCATGAGCTGATCTACAATTTTATGCTAGAGGGTTTGATTACTACAGCATCTAATATTCTTTTGCTACACTTGATATGAATTTAGTCTAGATTCTTAACTACATATAGTTTGAGTTGAAGACAATGTATGAACATTGGTTTTCGTTTGGCCATATCATATCATATATTATTATAA</genome_strand>
        <mrna_strand>TGGAGGCTGAAGCAAACATGAAGCAAAAACTAAAGTTTGAAGTGTTGAAACTCGAAGCAAGGGAATTGCTATCAAAGGACTTCAGCTGGGTAGAAAATGGATGTAATAGACTCCTTGAATTGAGGCGAATTCTCTCCTGTTCCTATCCAGTTTCATTTTACGTTTTTGATCAGACGCTGTTCAAGGATGAAATGACACAAAAAGATAGGGAAATAAAGAAGAACCTTTTTGAAAACCTGCAGCAGCAACTTGAAATAAACGTTGAGAGACTTTCGATGTTCTTGGAAGAACCATTTGCTAAATATCCTGAAGATAAACTTTTGGAGACTAGAACGAAGATCATCACTCTCTCCGTACTAACAGACAACCTCTGCAAAGAGTT..............................................................................................................................................................................................................................................................................................................GTACGATTGCATTGACAACGATTTACTGCTTCCTCTACAGCAGGCGAATCATACCATAGCTCATTATAGATCCGAGGGAGTGGCGAAAGCATCAGAACTTCCTAATTGACATTCCACCAACACTAGGCATGTGAGCACTCTCAATCAGAGGCAAGAAAAGATGCACATTCCTTTTCTCATGAGCTGATCTACAATTTTATGCTAGAGGGTTTGATTACTACAGCATCTAATATTCTTTTGCTACACTTGATATGAATTTAGTCTAGATTCTTAACTACATATAGTTTGAGTTGAAGACAATGTATGAACATTGGTTTTCGTTTGGCCATATCATATCATATATTATTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375519" ref_strand="+" ref_description="SGN-E375519 [TUS-34-B6]">
      <seq>aaacattgcccaaactgtcacaatgccgtggagaagaatgggggatgcaaccttgtaagatgtagatgtggacagccgttttgttggttgtgcggtggagctactggcttagaccacacatggagtagcattcgaggtcacacttgtggcatttataaggaaggggaagaggataagtcgacgactgtcagaaatgatctcttgcgctatactcattattatgagcgctatatggttcatcgtgattcgttggaggctgaagcaaacatgaagcaaaaactaaagtttgaagtgttgaaactcgaagcaagggaattgctatcaaaggacttcagctgggtagaaaatggatgtaatagactccttgaattgaggcgaattctctcctgttcctatccagtttcattttacgtttttgatcagacgctgttcaaggatgaaatgacacaaaaagatagggaaataaagaagaacctttttgaaaacctgcagcagcaacttgaaataaacgttgagagactttcgatgttcttggaagaaccatttgctaaatatcctgaagataaacttttggagactagaacgaagatcatcactctctccgtactaacagacaacctctgcaaagagttgtacgattgcattgacaacgatttactgcttcctctacagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="-" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="8625" stop="6280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8325" g_stop="8243" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8242" i_stop="7474" i_length="769">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7473" g_stop="6925" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="632" r_length="549" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6924" i_stop="6623" i_length="302">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6622" g_stop="6580" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="675" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="-" ref_id="SGN-E375519" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8325" e_stop="8243"/>
          <exon e_start="7473" e_stop="6925"/>
          <exon e_start="6622" e_stop="6580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATTGCCCAAACTGTCACAATGCCGTGGAGAAGAATGGGGGATGCAACCTTGTAAGATGTAGATGTGGACAGCCGTTTTGGTGAGACTTTATCCATGTCTGCAGTCTTTATTTTTTTCAAATTTTCTAATTTATATGTTCTATTCTTATTCCATTTATTTGCTATACCATTTTCATTTTATATATATTTTTCTATTGAAGTCTTTTAACAATATATTCTGTTCCTTCTCTTTTCTTTGGTCTCCCGGGAGTTTTCTTGGGGTGGGGGTGGGGGGTGATTAGTCTTGTGATGCATGAATTGCATATGATGCAAACAAGGACTTCCAAGGAGTAGAGATTGATGACTTTTAAAGCAGGAAACTGTAAAATAAAAGAAAGAGGGGGAAAGGAGAGCAAATGCTAAGAGAGTTGAACAGATAAAACGGATAATCCGTCCTTATTCCAAGAATGAAAACTTGACCAAGAATTAGAAGGACAAAGAGAAGCAGCAATATTTGTGGTTGTAGTATAAGCGGGCAAAGGAAAAGGAAGCATAACCTCAGTTGTTAAGAGCGGGAAGAGAAAGAGAAAAAGAGCATTTTCAAGGTTATAGAAGTTAAGATCCTAAGGTTATCCATCCCTTGCTAGAGATGTAGCTAGTTATTCTTTGAGTGTAGGGTAACAGTTAAATACACATTTCTCCTTTTTCTTACCTACAAGCTCAAAGTATGGCATAGTAGTTTCTCCTTTTTTTTCCTTGCACGTATTGGTTAATTTATTGAAAACATGTTGGCCAAGCCAAATTATCCCAGTACTTTCTCTTTCTCCATCACTTATATTTGTGTATGCAATTTTATTTTATACTTTGTAGTTGGTTGTGCGGTGGAGCTACTGGCTTAGACCACACATGGAGTAGCATTCGAGGTCACACTTGTGGCATTTATAAGGAAGGGGAAGAGGATAAGTCGACGACTGTCAGAAATGATCTCTTGCGCTATACTCATTATTATGAGCGCTATATGGTTCATCGTGATTCGTTGGAGGCTGAAGCAAACATGAAGCAAAAACTAAAGTTTGAAGTGTTGAAACTCGAAGCAAGGGAATTGCTATCAAAGGACTTCAGCTGGGTAGAAAATGGATGTAATAGACTCCTTGAATTGAGGCGAATTCTCTCCTGTTCCTATCCAGTTTCATTTTACGTTTTTGATCAGACGCTGTTCAAGGATGAAATGACACAAAAAGATAGGGAAATAAAGAAGAACCTTTTTGAAAACCTGCAGCAGCAACTTGAAATAAACGTTGAGAGACTTTCGATGTTCTTGGAAGAACCATTTGCTAAATATCCTGAAGATAAACTTTTGGAGACTAGAACGAAGATCATCACTCTCTCCGTACTAACAGACAACCTCTGCAAAGAGTTGTAAGTGTGCATCACATCTAATAAACTAGCTATGCATTATTTATATTTGCGTTAGGTTCTTCAAGTACATTGATATGTTAAAGAAGTCATCTACAGAAGGTCCTTTATATAACAATTCAGTTTCAAGGGAAACGAAACTCATGCTTTTCTAAACGAGTATCAACCATAATGCCCTTTGGTTAGAATCACAAGAAAGGCAAAAACAGTGATCTTTACTTGTGTTCTGTAGAAACTGACTGATCTGGATATTGCTAATGTGTCTACCAAGTGAGGCTTCATTCCTGGATTTTTTGTTTTTGCAGGTACGATTGCATTGACAACGATTTACTGCTTCCTCTACAGCAG</genome_strand>
        <mrna_strand>AAACATTGCCCAAACTGTCACAATGCCGTGGAGAAGAATGGGGGATGCAACCTTGTAAGATGTAGATGTGGACAGCCGTTTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTTGTGCGGTGGAGCTACTGGCTTAGACCACACATGGAGTAGCATTCGAGGTCACACTTGTGGCATTTATAAGGAAGGGGAAGAGGATAAGTCGACGACTGTCAGAAATGATCTCTTGCGCTATACTCATTATTATGAGCGCTATATGGTTCATCGTGATTCGTTGGAGGCTGAAGCAAACATGAAGCAAAAACTAAAGTTTGAAGTGTTGAAACTCGAAGCAAGGGAATTGCTATCAAAGGACTTCAGCTGGGTAGAAAATGGATGTAATAGACTCCTTGAATTGAGGCGAATTCTCTCCTGTTCCTATCCAGTTTCATTTTACGTTTTTGATCAGACGCTGTTCAAGGATGAAATGACACAAAAAGATAGGGAAATAAAGAAGAACCTTTTTGAAAACCTGCAGCAGCAACTTGAAATAAACGTTGAGAGACTTTCGATGTTCTTGGAAGAACCATTTGCTAAATATCCTGAAGATAAACTTTTGGAGACTAGAACGAAGATCATCACTCTCTCCGTACTAACAGACAACCTCTGCAAAGAGTT..............................................................................................................................................................................................................................................................................................................GTACGATTGCATTGACAACGATTTACTGCTTCCTCTACAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245389" ref_strand="+" ref_description="SGN-E245389 [cLEF-53-N14]">
      <seq>tggcttagaccacacatggagtagcattcgaggtcacacttgtggcatttataaggaaggggaagaggataagtcgacgactgtcagaaatgatctcttgcgctatactcattattatgagcgctatatggttcatcgtgattcgttggaggctgaagcaaacatgaagcaaaaactaaagtttgaagtgttgaaactcgaagcaagggaattgctatcaaaggacttcagctgggtagaaaatggatgtaatagactccttgaattgaggcgaattctctcctgttcctatccagtttcattttacgtttttgatcagacgctgttcaaggatgaaatgacacaaaaagatagggaaataaagaagaacctttttgaaaacctgcagcagcaacttgaaataaacgttgagagactttcgatgttcttggaagaaccatttgctaaatatcctgaagataaacttttggagactagaacgaagatcatcactctctccgtactaacagacaacctctgcaaagagttgtaagtgtgcatcacatctaataaactagctatgcattatttatatttgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="-" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="7752" stop="6574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7452" g_stop="6874" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="579" r_length="579" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="-" ref_id="SGN-E245389" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7452" e_stop="6874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTTAGACCACACATGGAGTAGCATTCGAGGTCACACTTGTGGCATTTATAAGGAAGGGGAAGAGGATAAGTCGACGACTGTCAGAAATGATCTCTTGCGCTATACTCATTATTATGAGCGCTATATGGTTCATCGTGATTCGTTGGAGGCTGAAGCAAACATGAAGCAAAAACTAAAGTTTGAAGTGTTGAAACTCGAAGCAAGGGAATTGCTATCAAAGGACTTCAGCTGGGTAGAAAATGGATGTAATAGACTCCTTGAATTGAGGCGAATTCTCTCCTGTTCCTATCCAGTTTCATTTTACGTTTTTGATCAGACGCTGTTCAAGGATGAAATGACACAAAAAGATAGGGAAATAAAGAAGAACCTTTTTGAAAACCTGCAGCAGCAACTTGAAATAAACGTTGAGAGACTTTCGATGTTCTTGGAAGAACCATTTGCTAAATATCCTGAAGATAAACTTTTGGAGACTAGAACGAAGATCATCACTCTCTCCGTACTAACAGACAACCTCTGCAAAGAGTTGTAAGTGTGCATCACATCTAATAAACTAGCTATGCATTATTTATATTTGCG</genome_strand>
        <mrna_strand>TGGCTTAGACCACACATGGAGTAGCATTCGAGGTCACACTTGTGGCATTTATAAGGAAGGGGAAGAGGATAAGTCGACGACTGTCAGAAATGATCTCTTGCGCTATACTCATTATTATGAGCGCTATATGGTTCATCGTGATTCGTTGGAGGCTGAAGCAAACATGAAGCAAAAACTAAAGTTTGAAGTGTTGAAACTCGAAGCAAGGGAATTGCTATCAAAGGACTTCAGCTGGGTAGAAAATGGATGTAATAGACTCCTTGAATTGAGGCGAATTCTCTCCTGTTCCTATCCAGTTTCATTTTACGTTTTTGATCAGACGCTGTTCAAGGATGAAATGACACAAAAAGATAGGGAAATAAAGAAGAACCTTTTTGAAAACCTGCAGCAGCAACTTGAAATAAACGTTGAGAGACTTTCGATGTTCTTGGAAGAACCATTTGCTAAATATCCTGAAGATAAACTTTTGGAGACTAGAACGAAGATCATCACTCTCTCCGTACTAACAGACAACCTCTGCAAAGAGTTGTAAGTGTGCATCACATCTAATAAACTAGCTATGCATTATTTATATTTGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253459" ref_strand="+" ref_description="SGN-E253459 [cLEG-24-J2]">
      <seq>attgcccaaactgtcaccaatgccgtggagaagaatgggggatgccaaccttgtaagatgtagatgtggacagccgttttgttggttgtgccggtggagctactggcttagaccacaccatggagtagcattcgaggtcacacttgtggcatttataaggaaggggaagaggataagtcgacgactgtcagaaatgatctcttgcgctatacctcattattatgagcgcctatatggttcatcgtgattcgttggaggctgaagcaaacatgaagcaaaaactaaagtttgaagtgttgaaactcgaagcaagggaattgctatcaaaggaccttcagctgggtagaaaatggatgtaatagactccttgaattgaggcgaattctctcctgttcctatccagtttcattttacgtttttgatcagaccgctgttcaaggatgaaatgacacaaaaagatagggaaataaagaagaacctttttgaaaaccctgcagcagcaacttgaaataaacgttgagagactttcgatgttcttggaagaaccatttgctaaatatcctgaagataaacttttggagactagaacgaagatcatcactctctccgtactaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="-" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="8621" stop="6646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8321" g_stop="8243" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8242" i_stop="7474" i_length="769">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7473" g_stop="6946" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="616" r_length="535" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="-" ref_id="SGN-E253459" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8321" e_stop="8243"/>
          <exon e_start="7473" e_stop="6946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGCCCAAACTGTCA-CAATGCCGTGGAGAAGAATGGGGGATG-CAACCTTGTAAGATGTAGATGTGGACAGCCGTTTTGGTGAGACTTTATCCATGTCTGCAGTCTTTATTTTTTTCAAATTTTCTAATTTATATGTTCTATTCTTATTCCATTTATTTGCTATACCATTTTCATTTTATATATATTTTTCTATTGAAGTCTTTTAACAATATATTCTGTTCCTTCTCTTTTCTTTGGTCTCCCGGGAGTTTTCTTGGGGTGGGGGTGGGGGGTGATTAGTCTTGTGATGCATGAATTGCATATGATGCAAACAAGGACTTCCAAGGAGTAGAGATTGATGACTTTTAAAGCAGGAAACTGTAAAATAAAAGAAAGAGGGGGAAAGGAGAGCAAATGCTAAGAGAGTTGAACAGATAAAACGGATAATCCGTCCTTATTCCAAGAATGAAAACTTGACCAAGAATTAGAAGGACAAAGAGAAGCAGCAATATTTGTGGTTGTAGTATAAGCGGGCAAAGGAAAAGGAAGCATAACCTCAGTTGTTAAGAGCGGGAAGAGAAAGAGAAAAAGAGCATTTTCAAGGTTATAGAAGTTAAGATCCTAAGGTTATCCATCCCTTGCTAGAGATGTAGCTAGTTATTCTTTGAGTGTAGGGTAACAGTTAAATACACATTTCTCCTTTTTCTTACCTACAAGCTCAAAGTATGGCATAGTAGTTTCTCCTTTTTTTTCCTTGCACGTATTGGTTAATTTATTGAAAACATGTTGGCCAAGCCAAATTATCCCAGTACTTTCTCTTTCTCCATCACTTATATTTGTGTATGCAATTTTATTTTATACTTTGTAGTTGGTTGTG-CGGTGGAGCTACTGGCTTAGACCACA-CATGGAGTAGCATTCGAGGTCACACTTGTGGCATTTATAAGGAAGGGGAAGAGGATAAGTCGACGACTGTCAGAAATGATCTCTTGCGCTATA-CTCATTATTATGAGCG-CTATATGGTTCATCGTGATTCGTTGGAGGCTGAAGCAAACATGAAGCAAAAACTAAAGTTTGAAGTGTTGAAACTCGAAGCAAGGGAATTGCTATCAAAGGAC-TTCAGCTGGGTAGAAAATGGATGTAATAGACTCCTTGAATTGAGGCGAATTCTCTCCTGTTCCTATCCAGTTTCATTTTACGTTTTTGATCAGA-CGCTGTTCAAGGATGAAATGACACAAAAAGATAGGGAAATAAAGAAGAACCTTTTTGAAAA-CCTGCAGCAGCAACTTGAAATAAACGTTGAGAGACTTTCGATGTTCTTGGAAGAACCATTTGCTAAATATCCTGAAGATAAACTTTTGGAGACTAGAACGAAGATCATCACTCTCTCCGTACTAAC</genome_strand>
        <mrna_strand>ATTGCCCAAACTGTCACCAATGCCGTGGAGAAGAATGGGGGATGCCAACCTTGTAAGATGTAGATGTGGACAGCCGTTTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTTGTGCCGGTGGAGCTACTGGCTTAGACCACACCATGGAGTAGCATTCGAGGTCACACTTGTGGCATTTATAAGGAAGGGGAAGAGGATAAGTCGACGACTGTCAGAAATGATCTCTTGCGCTATACCTCATTATTATGAGCGCCTATATGGTTCATCGTGATTCGTTGGAGGCTGAAGCAAACATGAAGCAAAAACTAAAGTTTGAAGTGTTGAAACTCGAAGCAAGGGAATTGCTATCAAAGGACCTTCAGCTGGGTAGAAAATGGATGTAATAGACTCCTTGAATTGAGGCGAATTCTCTCCTGTTCCTATCCAGTTTCATTTTACGTTTTTGATCAGACCGCTGTTCAAGGATGAAATGACACAAAAAGATAGGGAAATAAAGAAGAACCTTTTTGAAAACCCTGCAGCAGCAACTTGAAATAAACGTTGAGAGACTTTCGATGTTCTTGGAAGAACCATTTGCTAAATATCCTGAAGATAAACTTTTGGAGACTAGAACGAAGATCATCACTCTCTCCGTACTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709780" ref_strand="+" ref_description="SGN-E709780 [FA53AE02]">
      <seq>gttgagagagggacagaaatgttatatgttgaagcgggtgtgacactggaagggaaagaggaacatacttccactctgtcgacatctgaagtgacgtgtcaaatttgcttcgaagatgcccctgttgagaagaccactgtaatggactgcaaccatatattttgcaatgaatgttggacaactcatttcattgtaaaaataaatgagggtcagagtaaacaagtaacttgcatggcccaaaagtgcaatgtgatctgtgatgaaggaaagattagggatctcgtcactgcaagagatcctgctttagcagagaaatttgatcgttttctgttagagtcatatattgatgataacaagagggttaaatggtgccctagtgttcctcattgtggaaatgcaattcgtattgaggatgatgattactgctgtgaagttgaatgtgcatgtggtgtacagttctgttttaattgtttatcagaagcgcactcaccttgttcatgtctgatgtggaaactttggatgaagaagtgcaagaacgatgggaagacagtaacgtggataagtgaaaatgccaaacattgcccaaactgtcacaatgccgtggagaagaatgggggatgcaaccttgtaagatgtagatgtggacagccgttttgttggttgtgcggtggagctactggcttagaccacacatggagtagcattcgaggtcacacttgtggcatttataaagaaggggaagaggataagtcgacgactgtcagaaatgatctcttgcgctatactcattattatgagcgctatatggttcatcgtgattcgttggaggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="-" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="9640" stop="6998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9340" g_stop="9169" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9168" i_stop="8727" i_length="442">
            <donor d_prob="0.506" d_score="1.00"/>
            <acceptor a_prob="0.812" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8726" g_stop="8243" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="656" r_length="484" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8242" i_stop="7474" i_length="769">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7473" g_stop="7298" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="832" r_length="176" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="-" ref_id="SGN-E709780" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9340" e_stop="9169"/>
          <exon e_start="8726" e_stop="8243"/>
          <exon e_start="7473" e_stop="7298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAGAGAGGGACAGAAATGTTATATGCTGAAGCGGGTGTGACACTGGAAGGGAAAGAGGAACATACTTCCACTCTGTCGACATCTGAAGTGACGTGTCAAATTTGCTTCGAAGATGCCCCTGTTGAGAAGACCACTGTAATGGACTGCAACCATATATTTTGCAATGAATGTGAGCATCTCCCATCCCTTCCCTGAGCCTCTATCTCTGTACGAGTAAAATGTTTCTCTTATCTCTTATCCCCATTTAATCATTATACTAGTGACATGTCACTTTTGACACATGATCTGGAGTTTGTTGTCCCAACAGTTGAAGTCTCTGTTTGTATGCCTCACATAAGTGGGAAAGCTGTTGGGATCCTTTTCGTAACTACCTAACTTCGAAATACTGATGATTTCACTACATCTTTAATGGCATCAATAGCATTTAGAATCTTTTTCTGTAGCAAACCTATGTCTTTGTTAATTTTCTTTAATGTCAAAGTGATTAGTGCAGCTTGAAAAGTTGATGAGCTAGATTCACTTTTTGTATTTATTGTTGGTGCTTTCTCTTTTCTGGTCACTCGAACAAACGATGGTGTAGGCTTAAGGTTGCCAATAATTGTTCTATGCAGGTTGGACAACTCATTTCATTGTAAAAATAAATGAGGGTCAGAGTAAACAAGTAACTTGCATGGCCCAAAAGTGCAATGTGATCTGTGATGAAGGAAAGATTAGGGATCTCGTCACTGCAAGAGATCCTGCTTTAGCAGAGAAATTTGATCGTTTTCTGTTAGAGTCATATATTGATGATAACAAGAGGGTTAAATGGTGCCCTAGTGTTCCTCATTGTGGAAATGCAATTCGTATTGAGGATGATGATTACTGCTGTGAAGTTGAATGTGCATGTGGTGTACAGTTCTGTTTTAATTGTTTATCAGAAGCGCACTCACCTTGTTCATGTCTGATGTGGAAACTTTGGATGAAGAAGTGCAAGAACGATGGGAAGACAGTAACGTGGATAAGTGAAAATGCCAAACATTGCCCAAACTGTCACAATGCCGTGGAGAAGAATGGGGGATGCAACCTTGTAAGATGTAGATGTGGACAGCCGTTTTGGTGAGACTTTATCCATGTCTGCAGTCTTTATTTTTTTCAAATTTTCTAATTTATATGTTCTATTCTTATTCCATTTATTTGCTATACCATTTTCATTTTATATATATTTTTCTATTGAAGTCTTTTAACAATATATTCTGTTCCTTCTCTTTTCTTTGGTCTCCCGGGAGTTTTCTTGGGGTGGGGGTGGGGGGTGATTAGTCTTGTGATGCATGAATTGCATATGATGCAAACAAGGACTTCCAAGGAGTAGAGATTGATGACTTTTAAAGCAGGAAACTGTAAAATAAAAGAAAGAGGGGGAAAGGAGAGCAAATGCTAAGAGAGTTGAACAGATAAAACGGATAATCCGTCCTTATTCCAAGAATGAAAACTTGACCAAGAATTAGAAGGACAAAGAGAAGCAGCAATATTTGTGGTTGTAGTATAAGCGGGCAAAGGAAAAGGAAGCATAACCTCAGTTGTTAAGAGCGGGAAGAGAAAGAGAAAAAGAGCATTTTCAAGGTTATAGAAGTTAAGATCCTAAGGTTATCCATCCCTTGCTAGAGATGTAGCTAGTTATTCTTTGAGTGTAGGGTAACAGTTAAATACACATTTCTCCTTTTTCTTACCTACAAGCTCAAAGTATGGCATAGTAGTTTCTCCTTTTTTTTCCTTGCACGTATTGGTTAATTTATTGAAAACATGTTGGCCAAGCCAAATTATCCCAGTACTTTCTCTTTCTCCATCACTTATATTTGTGTATGCAATTTTATTTTATACTTTGTAGTTGGTTGTGCGGTGGAGCTACTGGCTTAGACCACACATGGAGTAGCATTCGAGGTCACACTTGTGGCATTTATAAGGAAGGGGAAGAGGATAAGTCGACGACTGTCAGAAATGATCTCTTGCGCTATACTCATTATTATGAGCGCTATATGGTTCATCGTGATTCGTTGGAGGCTG</genome_strand>
        <mrna_strand>GTTGAGAGAGGGACAGAAATGTTATATGTTGAAGCGGGTGTGACACTGGAAGGGAAAGAGGAACATACTTCCACTCTGTCGACATCTGAAGTGACGTGTCAAATTTGCTTCGAAGATGCCCCTGTTGAGAAGACCACTGTAATGGACTGCAACCATATATTTTGCAATGAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGACAACTCATTTCATTGTAAAAATAAATGAGGGTCAGAGTAAACAAGTAACTTGCATGGCCCAAAAGTGCAATGTGATCTGTGATGAAGGAAAGATTAGGGATCTCGTCACTGCAAGAGATCCTGCTTTAGCAGAGAAATTTGATCGTTTTCTGTTAGAGTCATATATTGATGATAACAAGAGGGTTAAATGGTGCCCTAGTGTTCCTCATTGTGGAAATGCAATTCGTATTGAGGATGATGATTACTGCTGTGAAGTTGAATGTGCATGTGGTGTACAGTTCTGTTTTAATTGTTTATCAGAAGCGCACTCACCTTGTTCATGTCTGATGTGGAAACTTTGGATGAAGAAGTGCAAGAACGATGGGAAGACAGTAACGTGGATAAGTGAAAATGCCAAACATTGCCCAAACTGTCACAATGCCGTGGAGAAGAATGGGGGATGCAACCTTGTAAGATGTAGATGTGGACAGCCGTTTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTTGTGCGGTGGAGCTACTGGCTTAGACCACACATGGAGTAGCATTCGAGGTCACACTTGTGGCATTTATAAAGAAGGGGAAGAGGATAAGTCGACGACTGTCAGAAATGATCTCTTGCGCTATACTCATTATTATGAGCGCTATATGGTTCATCGTGATTCGTTGGAGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249719" ref_strand="+" ref_description="SGN-E249719 [cLEF-56-N12]">
      <seq>agctatggaagcagcgatgatgatgaatgggacaatcaacagtgcaataatgacgatgaagacgatgatgatggtgaatttcttgatgggtttacggaaattgaacaagagagaaacggaatctctggaaagggtccttcatgcaaggtaatcaggaaagagactcttttagctgcacagaaagaagacttgcaaagagtgatggacttgctatctctgaaggaacatcatgctcgaagcttgcttattcattaccgatgggaagttgacaaggtctttgcggttcttgttgagagagggacagaaatgttatatgctgaagcgggtgtgacactggaagggaaagaggaacatacttccactctgtcgacatctgaagtgacgtgtcaaatttgcttcgaagatgcccctgttgagaagaccactgtaatggactgcaaccatatattttgcaatgaatgttggacaactcatttcattgtaaaaataaatgagggtcagagtaaacaagtaacttgcatggcccaaaagtgcaatgtgatctgtgatgaaagaaagattanggatctcgtcactgcaagagatcctgctttagcagagaaatttgatcgttttctgttagagtcatatattgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="-" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="10987" stop="8248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10687" g_stop="10541" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10540" i_stop="9565" i_length="976">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9564" g_stop="9532" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="180" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9531" i_stop="9449" i_length="83">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9448" g_stop="9169" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="460" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9168" i_stop="8727" i_length="442">
            <donor d_prob="0.506" d_score="1.00"/>
            <acceptor a_prob="0.812" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8726" g_stop="8548" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="639" r_length="179" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="-" ref_id="SGN-E249719" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10687" e_stop="10541"/>
          <exon e_start="9564" e_stop="9532"/>
          <exon e_start="9448" e_stop="9169"/>
          <exon e_start="8726" e_stop="8548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTATGGGAGCAGCGATGATGATGAATGGGACAATCAACAGTGCAATAATGACGATGAAGACGATGATGATGGTGAATTTCTTGATGGGTTTACGGAAATTGAACAAGAGAGAAACGGAATCTCTGGAAAGGGTCCTTCATGCAAGGTAGTATGATAAAAGTAAAATTTTTACGGGTTTAAACGAATTCAGTAAGCTTTATATTTCGAAACCGATAAAGGATTTTGAGAAATTAACCTATAAAGTTTAAATCTTCGATACACCCCTTGTAACCCTTTTCATGCAAATGCTTAATTTTATTGTTTTCGAAAAAAAAGGTGTCTCTTTTGAGACTTGATTAGGTTTTCCTTCATATTTTGTTCTGGTTTTGGTTGTAGTTCTTTCATACACAAAATATATGCTTCGTATCAGAAATGTCAGTTTCTAATACATTAGAACTCTAGAATGACTGTTTAATACTGTTTCAGTTGAAAGATTGGTACTAGTAGATTTTATGCATGTTCAGTGATTAAATATTGGGTAAGACACTGGATGGTGTAGTGATTTGTCTCGCTATCCGTTCAGACTAGGAGTCGTAGTATTGCTAATGTAGTTTCTTGCCTTCGATTTCTGTTGTTTCTCGTAAGTATATTTTGTTATACTTTCACTTCCGTTGTTTGTTTTGGACTGTTTTTTCTTGAGCTGAGGGTCTGCAGGAAGCAGCCTCTCTACCTCTTAAGGTAAAGGTAAGGGCGGCGTACAAGTACCCTCCCTAGACCTCACTTTACGGGACTATGATGGGTATGTTGTTGTATACTGGATGGTGTTTTCTTTAACAAAAAAAGAGTTTTAATGATTTTAAATATTTTGATATTATGCTAGAAATTCTTTAAATGAGATTAGCTTCTGGCTAGCAGCGTAACTTTTTGAGTTTCTGCCACATACAATCATTTTCTAAGTCCTGTGAAGCAATGAATACCCTGTGCCAAGTGAGTGCATGAGGCACAGTACATGATATATAATTACTTATCAGGGAAAGTATAGGAAGGAAAAAATCACCCTGAATTGTGAAGTTGTCTGCTATTTTCATTTTTATGATTTATGAATTTCTTCAGTTCTTCATGCCTACTGTTGGGTTTTGTAGGTAATCAGGAAAGAGACTCTTTTAGCTGCACAGGTGAGCAACTTTTCCCAAAATTTTGACTTTTCCATATGGATATATGTTAACTGACATGAGAAATAATGGTATTTAACTTGCAGAAAGAAGACTTGCAAAGAGTGATGGACTTGCTATCTCTGAAGGAACATCATGCTCGAAGCTTGCTTATTCATTACCGATGGGAAGTTGACAAGGTCTTTGCGGTTCTTGTTGAGAGAGGGACAGAAATGTTATATGCTGAAGCGGGTGTGACACTGGAAGGGAAAGAGGAACATACTTCCACTCTGTCGACATCTGAAGTGACGTGTCAAATTTGCTTCGAAGATGCCCCTGTTGAGAAGACCACTGTAATGGACTGCAACCATATATTTTGCAATGAATGTGAGCATCTCCCATCCCTTCCCTGAGCCTCTATCTCTGTACGAGTAAAATGTTTCTCTTATCTCTTATCCCCATTTAATCATTATACTAGTGACATGTCACTTTTGACACATGATCTGGAGTTTGTTGTCCCAACAGTTGAAGTCTCTGTTTGTATGCCTCACATAAGTGGGAAAGCTGTTGGGATCCTTTTCGTAACTACCTAACTTCGAAATACTGATGATTTCACTACATCTTTAATGGCATCAATAGCATTTAGAATCTTTTTCTGTAGCAAACCTATGTCTTTGTTAATTTTCTTTAATGTCAAAGTGATTAGTGCAGCTTGAAAAGTTGATGAGCTAGATTCACTTTTTGTATTTATTGTTGGTGCTTTCTCTTTTCTGGTCACTCGAACAAACGATGGTGTAGGCTTAAGGTTGCCAATAATTGTTCTATGCAGGTTGGACAACTCATTTCATTGTAAAAATAAATGAGGGTCAGAGTAAACAAGTAACTTGCATGGCCCAAAAGTGCAATGTGATCTGTGATGAAGGAAAGATTAGGGATCTCGTCACTGCAAGAGATCCTGCTTTAGCAGAGAAATTTGATCGTTTTCTGTTAGAGTCATATATTGATGAT</genome_strand>
        <mrna_strand>AGCTATGGAAGCAGCGATGATGATGAATGGGACAATCAACAGTGCAATAATGACGATGAAGACGATGATGATGGTGAATTTCTTGATGGGTTTACGGAAATTGAACAAGAGAGAAACGGAATCTCTGGAAAGGGTCCTTCATGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCAGGAAAGAGACTCTTTTAGCTGCACAG...................................................................................AAAGAAGACTTGCAAAGAGTGATGGACTTGCTATCTCTGAAGGAACATCATGCTCGAAGCTTGCTTATTCATTACCGATGGGAAGTTGACAAGGTCTTTGCGGTTCTTGTTGAGAGAGGGACAGAAATGTTATATGCTGAAGCGGGTGTGACACTGGAAGGGAAAGAGGAACATACTTCCACTCTGTCGACATCTGAAGTGACGTGTCAAATTTGCTTCGAAGATGCCCCTGTTGAGAAGACCACTGTAATGGACTGCAACCATATATTTTGCAATGAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGACAACTCATTTCATTGTAAAAATAAATGAGGGTCAGAGTAAACAAGTAACTTGCATGGCCCAAAAGTGCAATGTGATCTGTGATGAAAGAAAGATTANGGATCTCGTCACTGCAAGAGATCCTGCTTTAGCAGAGAAATTTGATCGTTTTCTGTTAGAGTCATATATTGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704209" ref_strand="+" ref_description="SGN-E704209 [FA23CF04]">
      <seq>tttcactccgatcaaaactctccaaaaaaaaatccaaaaatcttccttccccacgaaggaatttcaagaatcgacaaacctagggatcatcaaagcgtaaaattgctaacttttttggggtttttcgatttttctctgtggggggttttagtgtatgtgaaaaattatggaggattatagctatgggagcagcgatgatgatgaatgggacaatcaacagtgcaataatgacgatgaagacgatgatgatggtgaatttcttgatgggtttacggaaattgaacaagagagaaacggaatctctggaaagggtccttcatgcaaggtaatcaggaaagagactcttttagctgcacagaaagaagacttgcaaagagtgatggacttgctatctctgaaggaacatcatgctcgaagcttgcttattcattaccgatgggaagttgacaaggtctttgcggttcttgttgagagagggacagaaatgttatatgctgaagcgggtgtgacactggaagggaaagaggaacatacttccactctgtcgacatctgaagtgacgtgtcaaatttgcttcgaagatgcccctgttgagaagaccactgtaatggactgcaaccatatattttgcaatgaatgttggacaactcatttcattgtaaaaataaatgagggtcagagtaaacaagtaacttgcatggcccaaaagtgcaatgtgatctgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="-" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="11165" stop="8339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10865" g_stop="10541" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10540" i_stop="9565" i_length="976">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9564" g_stop="9532" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="358" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9531" i_stop="9449" i_length="83">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9448" g_stop="9169" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="638" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9168" i_stop="8727" i_length="442">
            <donor d_prob="0.506" d_score="1.00"/>
            <acceptor a_prob="0.812" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8726" g_stop="8639" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="726" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="-" ref_id="SGN-E704209" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10865" e_stop="10541"/>
          <exon e_start="9564" e_stop="9532"/>
          <exon e_start="9448" e_stop="9169"/>
          <exon e_start="8726" e_stop="8639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCACTCCGATCAAAACTCTCCAAAAAAAAATCCAAAAATCTTCCTTCCCCACGAAGGAATTTCAAGAATCGACAAACCTAGGGATCATCAAAGCGTAAAATTGCTAACTTTTTTGGGGTTTTTCGATTTTTCTCTGTGGGGGGTTTTAGTGTATGTGAAAAATTATGGAGGATTATAGCTATGGGAGCAGCGATGATGATGAATGGGACAATCAACAGTGCAATAATGACGATGAAGACGATGATGATGGTGAATTTCTTGATGGGTTTACGGAAATTGAACAAGAGAGAAACGGAATCTCTGGAAAGGGTCCTTCATGCAAGGTAGTATGATAAAAGTAAAATTTTTACGGGTTTAAACGAATTCAGTAAGCTTTATATTTCGAAACCGATAAAGGATTTTGAGAAATTAACCTATAAAGTTTAAATCTTCGATACACCCCTTGTAACCCTTTTCATGCAAATGCTTAATTTTATTGTTTTCGAAAAAAAAGGTGTCTCTTTTGAGACTTGATTAGGTTTTCCTTCATATTTTGTTCTGGTTTTGGTTGTAGTTCTTTCATACACAAAATATATGCTTCGTATCAGAAATGTCAGTTTCTAATACATTAGAACTCTAGAATGACTGTTTAATACTGTTTCAGTTGAAAGATTGGTACTAGTAGATTTTATGCATGTTCAGTGATTAAATATTGGGTAAGACACTGGATGGTGTAGTGATTTGTCTCGCTATCCGTTCAGACTAGGAGTCGTAGTATTGCTAATGTAGTTTCTTGCCTTCGATTTCTGTTGTTTCTCGTAAGTATATTTTGTTATACTTTCACTTCCGTTGTTTGTTTTGGACTGTTTTTTCTTGAGCTGAGGGTCTGCAGGAAGCAGCCTCTCTACCTCTTAAGGTAAAGGTAAGGGCGGCGTACAAGTACCCTCCCTAGACCTCACTTTACGGGACTATGATGGGTATGTTGTTGTATACTGGATGGTGTTTTCTTTAACAAAAAAAGAGTTTTAATGATTTTAAATATTTTGATATTATGCTAGAAATTCTTTAAATGAGATTAGCTTCTGGCTAGCAGCGTAACTTTTTGAGTTTCTGCCACATACAATCATTTTCTAAGTCCTGTGAAGCAATGAATACCCTGTGCCAAGTGAGTGCATGAGGCACAGTACATGATATATAATTACTTATCAGGGAAAGTATAGGAAGGAAAAAATCACCCTGAATTGTGAAGTTGTCTGCTATTTTCATTTTTATGATTTATGAATTTCTTCAGTTCTTCATGCCTACTGTTGGGTTTTGTAGGTAATCAGGAAAGAGACTCTTTTAGCTGCACAGGTGAGCAACTTTTCCCAAAATTTTGACTTTTCCATATGGATATATGTTAACTGACATGAGAAATAATGGTATTTAACTTGCAGAAAGAAGACTTGCAAAGAGTGATGGACTTGCTATCTCTGAAGGAACATCATGCTCGAAGCTTGCTTATTCATTACCGATGGGAAGTTGACAAGGTCTTTGCGGTTCTTGTTGAGAGAGGGACAGAAATGTTATATGCTGAAGCGGGTGTGACACTGGAAGGGAAAGAGGAACATACTTCCACTCTGTCGACATCTGAAGTGACGTGTCAAATTTGCTTCGAAGATGCCCCTGTTGAGAAGACCACTGTAATGGACTGCAACCATATATTTTGCAATGAATGTGAGCATCTCCCATCCCTTCCCTGAGCCTCTATCTCTGTACGAGTAAAATGTTTCTCTTATCTCTTATCCCCATTTAATCATTATACTAGTGACATGTCACTTTTGACACATGATCTGGAGTTTGTTGTCCCAACAGTTGAAGTCTCTGTTTGTATGCCTCACATAAGTGGGAAAGCTGTTGGGATCCTTTTCGTAACTACCTAACTTCGAAATACTGATGATTTCACTACATCTTTAATGGCATCAATAGCATTTAGAATCTTTTTCTGTAGCAAACCTATGTCTTTGTTAATTTTCTTTAATGTCAAAGTGATTAGTGCAGCTTGAAAAGTTGATGAGCTAGATTCACTTTTTGTATTTATTGTTGGTGCTTTCTCTTTTCTGGTCACTCGAACAAACGATGGTGTAGGCTTAAGGTTGCCAATAATTGTTCTATGCAGGTTGGACAACTCATTTCATTGTAAAAATAAATGAGGGTCAGAGTAAACAAGTAACTTGCATGGCCCAAAAGTGCAATGTGATCTGTGA</genome_strand>
        <mrna_strand>TTTCACTCCGATCAAAACTCTCCAAAAAAAAATCCAAAAATCTTCCTTCCCCACGAAGGAATTTCAAGAATCGACAAACCTAGGGATCATCAAAGCGTAAAATTGCTAACTTTTTTGGGGTTTTTCGATTTTTCTCTGTGGGGGGTTTTAGTGTATGTGAAAAATTATGGAGGATTATAGCTATGGGAGCAGCGATGATGATGAATGGGACAATCAACAGTGCAATAATGACGATGAAGACGATGATGATGGTGAATTTCTTGATGGGTTTACGGAAATTGAACAAGAGAGAAACGGAATCTCTGGAAAGGGTCCTTCATGCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCAGGAAAGAGACTCTTTTAGCTGCACAG...................................................................................AAAGAAGACTTGCAAAGAGTGATGGACTTGCTATCTCTGAAGGAACATCATGCTCGAAGCTTGCTTATTCATTACCGATGGGAAGTTGACAAGGTCTTTGCGGTTCTTGTTGAGAGAGGGACAGAAATGTTATATGCTGAAGCGGGTGTGACACTGGAAGGGAAAGAGGAACATACTTCCACTCTGTCGACATCTGAAGTGACGTGTCAAATTTGCTTCGAAGATGCCCCTGTTGAGAAGACCACTGTAATGGACTGCAACCATATATTTTGCAATGAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGACAACTCATTTCATTGTAAAAATAAATGAGGGTCAGAGTAAACAAGTAACTTGCATGGCCCAAAAGTGCAATGTGATCTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437089" ref_strand="+" ref_description="SGN-E437089 [cSTA-2-L17]">
      <seq>aaagccccgtgccagagattcaacggacaaatcttgggaatgtggttttgctgctcaagtctctcaaaattcagaacctgttggattttgattttatggacccacctcctcaggataacatccttaactccatgtatcagttgtgggtattaggtgcacttaacaatgttggggatttaacaagccttggctggaaaatggtggagttcccattggatcctccccttgccaaaatgctcttgatgggagaacaactagaatgcttaaatgaggttctgactattgtttctatgctttcagtgccttccgttttctttagacccaaggatagggctgaggaaagtgatgccgctagggaaaagttttttgtgccagaatctgatcaccttacactgcttaatgtttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="14614" stop="15619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14914" g_stop="15319" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E437089" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E437089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14914" e_stop="15319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCCCCGTGCCAGAGATTCAACGGACAAATCTTGGGAATGTGGTTTTGCTGCTCAAGTCTCTCAAAATTCAGAACTTGTTGGATTTTGATTTTATGGATCCACCTCCTCAAGATAACATCCTTAACTCCATGTATCAGTTGTGGTTACTAGGTGCACTGAATGATGTTGGTGATTTAACGGACCTTGGACGAAAAATGGTGAAGTTCCCGTTGGACCCTGCCCTTGCCAAATTGCTC-TGATGGGGGAACAACTAGAATGCTTAAATGAGGTTCTGACAATTGTTTCTATGCTTTCAGTGCCTTCAGTTTTCTTTCGACCTAAGGATAGGGAAGCGGAAAGTGATGCTGCTAGGGAAAAGTTTTTTGTGCCAGAATCTGATCACCTTACATTGCTTAATGTTTAC</genome_strand>
        <mrna_strand>AAAGCCCCGTGCCAGAGATTCAACGGACAAATCTTGGGAATGTGGTTTTGCTGCTCAAGTCTCTCAAAATTCAGAACCTGTTGGATTTTGATTTTATGGACCCACCTCCTCAGGATAACATCCTTAACTCCATGTATCAGTTGTGGGTATTAGGTGCACTTAACAATGTTGGGGATTTAACAAGCCTTGGCTGGAAAATGGTGGAGTTCCCATTGGATCCTCCCCTTGCCAAAATGCTCTTGATGGGAGAACAACTAGAATGCTTAAATGAGGTTCTGACTATTGTTTCTATGCTTTCAGTGCCTTCCGTTTTCTTTAGACCCAAGGATAGGGCTGAGGAAAGTGATGCCGCTAGGGAAAAGTTTTTTGTGCCAGAATCTGATCACCTTACACTGCTTAATGTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E223337" ref_strand="-" ref_description="SGN-E223337 [cLEL-14-F18](-)">
      <seq>tttttttttttgcttttttcttttgattatcctgattgcattatgtcaatgtttaagctttgtatcacacatgtattaatgtacttttaatacatttttgaacaatgtattggaaggggagcaaatgttgatgtacacactgaatgaggcatcgaggaacgtcatggcatcgatgataaagttgatgctctgaagagcataatcaagatcagcgtcagtagttcaataggtatcacatggtggtcgagggctcatcaacagtcaatagaacttaatatacagtaaacatgatactgtctcttccatgcttggacgatttgttggttctcgagttttcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="15878" stop="16957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16179" g_stop="16460" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16461" i_stop="16606" i_length="146">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.852" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16607" g_stop="16664" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="340" r_length="58" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E223337" ref_strand="-">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>340</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223337" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="16179" e_stop="16460"/>
          <exon e_start="16607" e_stop="16664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTATTTTTGCCGTTTTCTTTTGATTATCCTGATTGCATTATGTCAATGTTTAAGCTTTGTATCACACATGTATTAATGTACTTTTAATACATTTTTGAACAATGTATTGGAAGGGGAGCAAATGTTGATGTACACACTGAATGAGGCATCGAGGAACGTCATGGCATCGATGATAAAGTTGATGCTCTGAAGAGCATAATCAAGATCAGCGTCAGTAGTTCAATAGGTATCACATGGTGGTCGAGGGCTCATCAACAGTCAATAGAACTTAATATACAGGTGTGTATTCGGAATTTAGACGTCTGAATCTTAAAAAATACAAATGAGGCCTTAGTCTAGGCCCTAGAAGAAATGCAAAAAAAATGCCCATATTCTTAATTCTAACTGGTTTATTCTGCCTTATGTACATTTACTTGAATCTTCAGTAAACATGATACTGTCTCTTCCATGCTTGGACGATTTGTTGGTTCTCGAGTCAAGCAT</genome_strand>
        <mrna_strand>TTTTTTTTTTTGCTTTTTTCTTTTGATTATCCTGATTGCATTATGTCAATGTTTAAGCTTTGTATCACACATGTATTAATGTACTTTTAATACATTTTTGAACAATGTATTGGAAGGGGAGCAAATGTTGATGTACACACTGAATGAGGCATCGAGGAACGTCATGGCATCGATGATAAAGTTGATGCTCTGAAGAGCATAATCAAGATCAGCGTCAGTAGTTCAATAGGTATCACATGGTGGTCGAGGGCTCATCAACAGTCAATAGAACTTAATATACAG..................................................................................................................................................TAAACATGATACTGTCTCTTCCATGCTTGGACGATTTGTTGGTTCTCGAGTTTTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E223560" ref_strand="-" ref_description="SGN-E223560 [cLEL-14-F18](-)">
      <seq>tttttttttttgccgttttcttttgattatcctgattgcattatgtcaatgtttaagctttgtatcacacatgtattaatgtacttttaatacatttttgaacaatgtattggaaggggagcaaatgttgatgtacacactgaatgaggcatcgaggaacgtcatggcatcgatgataaagttgatgctctgaagagcataatcaagatcagcgtcagtagttcaataggtatcacatggtggtcgagggctcatcaacagtcaatagaacttaatatacagtaaacatgatactgtctcttccatgcttggacgatttgttggttctcgagtttttctttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="15878" stop="16957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16179" g_stop="16460" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16461" i_stop="16606" i_length="146">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.852" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16607" g_stop="16655" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="331" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E223560" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223560" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="16179" e_stop="16460"/>
          <exon e_start="16607" e_stop="16655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTATTTTTGCCGTTTTCTTTTGATTATCCTGATTGCATTATGTCAATGTTTAAGCTTTGTATCACACATGTATTAATGTACTTTTAATACATTTTTGAACAATGTATTGGAAGGGGAGCAAATGTTGATGTACACACTGAATGAGGCATCGAGGAACGTCATGGCATCGATGATAAAGTTGATGCTCTGAAGAGCATAATCAAGATCAGCGTCAGTAGTTCAATAGGTATCACATGGTGGTCGAGGGCTCATCAACAGTCAATAGAACTTAATATACAGGTGTGTATTCGGAATTTAGACGTCTGAATCTTAAAAAATACAAATGAGGCCTTAGTCTAGGCCCTAGAAGAAATGCAAAAAAAATGCCCATATTCTTAATTCTAACTGGTTTATTCTGCCTTATGTACATTTACTTGAATCTTCAGTAAACATGATACTGTCTCTTCCATGCTTGGACGATTTGTTGGTTCTCGA</genome_strand>
        <mrna_strand>TTTTTTTTTTTGCCGTTTTCTTTTGATTATCCTGATTGCATTATGTCAATGTTTAAGCTTTGTATCACACATGTATTAATGTACTTTTAATACATTTTTGAACAATGTATTGGAAGGGGAGCAAATGTTGATGTACACACTGAATGAGGCATCGAGGAACGTCATGGCATCGATGATAAAGTTGATGCTCTGAAGAGCATAATCAAGATCAGCGTCAGTAGTTCAATAGGTATCACATGGTGGTCGAGGGCTCATCAACAGTCAATAGAACTTAATATACAG..................................................................................................................................................TAAACATGATACTGTCTCTTCCATGCTTGGACGATTTGTTGGTTCTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458892" ref_strand="+" ref_description="SGN-E458892 [cPRO-32-P17]">
      <seq>attggaatgggagcaaatgttgatgtacagactgaacgaggcgtcgaggaacgtcatggcatcgatgataatgttgatgctttgaagagcataatcaagatcagcgtcagtaattcaatattgggtaccacatagtggtcgagggctcattcaacagtcaatagaacttaatatacagctactgcagcagaaagcagaatttctctactttcctctacaattaccgcgtcttttccggtgactaattccaacagtacaactccaaaggcataaatgtccatctttgaagtcactgaccctctctcaacgtactcaggcgccatgtatcctgttgtccccacaagctcccaagtcgtgcctgatgtatctgtttctttagcaagactgaagtttgcaatctttgctcgtatgttgctgtcaaggagaatgtttctactgttgatgttcttgtggatgtagcctggtttggtaaagctgtgaagataatgaagtccattagctacatccaacgcaatctgaatcctttttttccagcttatggtatctcgagacttggttctggtcagccattccctgagagagccatttttcatgtattcaaagacaagaaagaagcaacctttatgttcacaatagccacaaagctttattagattgaagtgattgatcttatgcagcatgttcacttctctagatacatccgtgatcgccattttgactgctaatatttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="15987" stop="17633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16287" g_stop="16460" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16461" i_stop="16779" i_length="319">
            <donor d_prob="0.950" d_score="0.94"/>
            <acceptor a_prob="0.841" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16780" g_stop="17333" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="732" r_length="554" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E458892" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E458892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16287" e_stop="16460"/>
          <exon e_start="16780" e_stop="17333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGAAGGGGAGCAAATGTTGATGTACACACTGAATGAGGCATCGAGGAACGTCATGGCATCGATGATAAAGTTGATGCTCTGAAGAGCATAATCAAGATCAGCGTCAGTAGTTCAATA---GGTATCACATGGTGGTCGAGGGCTCA-TCAACAGTCAATAGAACTTAATATACAGGTGTGTATTCGGAATTTAGACGTCTGAATCTTAAAAAATACAAATGAGGCCTTAGTCTAGGCCCTAGAAGAAATGCAAAAAAAATGCCCATATTCTTAATTCTAACTGGTTTATTCTGCCTTATGTACATTTACTTGAATCTTCAGTAAACATGATACTGTCTCTTCCATGCTTGGACGATTTGTTGGTTCTCGAGTCAAGCATCTTAAGCTTAGGTTGGCTACCGAAATTGCTATTTCCAAATCACTATCTTCCCTCATATCTGCTTTGATGAATCCATCCAGTTCAATTTCTGCATTTTCTCCTTCCATTATTGCAGCTACTGCAGCAGAAAGCAGAATTTCTCCACTTTCCTCTACAATTACAGCATCTTTGCCGGTGACTAATTCCAACAGGACAACTCCAAAGACATAAATGTCCATCTTTGAAGTCACTGTCCCTCTCTCAGCGTACTCAGGAGCCATGTAACCTGTTGTCCCCACAAGCTCCCAACTCATGCCTGATGTATCCGTTTCTTTAGCAACACTGAAGTTTGTAATCTTTGCTCGTATGTTGTTGTCGAGGAGAATGTTTCTACTGTTGATGTTCTTGTGGATGTAGCCTGGTTTGGTAAAGCTGTGAAGATAATGAAGTCCATTAGCTACATCCAACACAATCTGAATCCTTTTTTTCCAGCTTATGGTATCTTGAGACTTGGTTCTGATCAGCCATTCCCTGAGAGAGCCATTTTGCATGTATTCAAAGACAAGAAAGAAGCAACCTTTATGTTCACAATAGCCACAAAGCTTTATTAGATTGAAGTGATTGATCTTATGTAGTATGTTCACTTCTCTAGATACATCCATGATCGCCATTTTGACTGCTAAGGTTTCC</genome_strand>
        <mrna_strand>ATTGGAATGGGAGCAAATGTTGATGTACAGACTGAACGAGGCGTCGAGGAACGTCATGGCATCGATGATAATGTTGATGCTTTGAAGAGCATAATCAAGATCAGCGTCAGTAATTCAATATTGGGTACCACATAGTGGTCGAGGGCTCATTCAACAGTCAATAGAACTTAATATACAG...............................................................................................................................................................................................................................................................................................................................CTACTGCAGCAGAAAGCAGAATTTCTCTACTTTCCTCTACAATTACCGCGTCTTTTCCGGTGACTAATTCCAACAGTACAACTCCAAAGGCATAAATGTCCATCTTTGAAGTCACTGACCCTCTCTCAACGTACTCAGGCGCCATGTATCCTGTTGTCCCCACAAGCTCCCAAGTCGTGCCTGATGTATCTGTTTCTTTAGCAAGACTGAAGTTTGCAATCTTTGCTCGTATGTTGCTGTCAAGGAGAATGTTTCTACTGTTGATGTTCTTGTGGATGTAGCCTGGTTTGGTAAAGCTGTGAAGATAATGAAGTCCATTAGCTACATCCAACGCAATCTGAATCCTTTTTTTCCAGCTTATGGTATCTCGAGACTTGGTTCTGGTCAGCCATTCCCTGAGAGAGCCATTTTTCATGTATTCAAAGACAAGAAAGAAGCAACCTTTATGTTCACAATAGCCACAAAGCTTTATTAGATTGAAGTGATTGATCTTATGCAGCATGTTCACTTCTCTAGATACATCCGTGATCGCCATTTTGACTGCTAATATTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238365" ref_strand="+" ref_description="SGN-E238365 [cLED-17-K22]">
      <seq>cttgagacttggttctgatcagccattccctgagagagccattttgcatgtattcaaagacaagaaagaagcaacctttatgttcacaatagccacaaagctttattagattgaagtgattgatcttatgtagtatgttcacttctctagatacatccatgatcgccattttgactgctaaggtttcccctttaaaccctccccagtatacagatccctttatccggttcttggagtcaaagttttgcgtagcatgcttcaattctttaaacttaaaaaccttagggacatgatctatgttcgcgatctccacgaggatatcttcatgacttgaagacctcctcggaaatttgctatctcttttcttaaacaaagcaagaaggatgacccaagaaaccacaaagcctgttgcaactccactacctatgtaaagatttctctttgattttccctttgaagcattagctgcagatggaggtgaaaacgacctaataggttttctataattctcatttccggtatctaaatttgatggttcagaaggcaggggaattagaatggttgtaaaaggatacaaaacagaattttcatccaagaatccatttgcttcgattatgttccttccattaactttaaatcttttgccgactgtaaggatgtcatcgccaacgtttattgaataagtcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="16846" stop="18134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17146" g_stop="17834" g_length="689"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="689" r_length="689" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E238365" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17146" e_stop="17834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGAGACTTGGTTCTGATCAGCCATTCCCTGAGAGAGCCATTTTGCATGTATTCAAAGACAAGAAAGAAGCAACCTTTATGTTCACAATAGCCACAAAGCTTTATTAGATTGAAGTGATTGATCTTATGTAGTATGTTCACTTCTCTAGATACATCCATGATCGCCATTTTGACTGCTAAGGTTTCCCCTTTAAACCCTCCCCAGTATACAGATCCCTTTATCCGGTTCTTGGAGTCAAAGTTTTGCGTAGCATGCTTCAATTCTTTAAACTTAAAAACCTTAGGGACATGATCTATGTTCGCGATCTCCACGAGGATATCTTCATGACTTGAAGACCTCCTCGGAAATTTGCTATCTCTTTTCTTAAACAAAGCAAGAAGGATGACCCAAGAAACCACAAAGCCTGTTGCAACTCCACTACCTATGTAAAGATTTCTCTTTGATTTTCCCTTTGAAGCATTAGCTGCAGATGGAGGTGAAAACGACCTAATAGGTTTTCTATAATTCTCATTTCCGGTATCTAAATTTGATGGTTCAGAAGGCAGGGGAATTAGAATGGTTGTAAAAGGATACAAAACAGAATTTTCATCCAAGAATCCATTTGCTTCGATTATGTTCCTTCCATTAACTTTAAATCTTTTGCCGACTGTAAGGATGTCATCGCCAACGTTTATTGAATAAGTCATC</genome_strand>
        <mrna_strand>CTTGAGACTTGGTTCTGATCAGCCATTCCCTGAGAGAGCCATTTTGCATGTATTCAAAGACAAGAAAGAAGCAACCTTTATGTTCACAATAGCCACAAAGCTTTATTAGATTGAAGTGATTGATCTTATGTAGTATGTTCACTTCTCTAGATACATCCATGATCGCCATTTTGACTGCTAAGGTTTCCCCTTTAAACCCTCCCCAGTATACAGATCCCTTTATCCGGTTCTTGGAGTCAAAGTTTTGCGTAGCATGCTTCAATTCTTTAAACTTAAAAACCTTAGGGACATGATCTATGTTCGCGATCTCCACGAGGATATCTTCATGACTTGAAGACCTCCTCGGAAATTTGCTATCTCTTTTCTTAAACAAAGCAAGAAGGATGACCCAAGAAACCACAAAGCCTGTTGCAACTCCACTACCTATGTAAAGATTTCTCTTTGATTTTCCCTTTGAAGCATTAGCTGCAGATGGAGGTGAAAACGACCTAATAGGTTTTCTATAATTCTCATTTCCGGTATCTAAATTTGATGGTTCAGAAGGCAGGGGAATTAGAATGGTTGTAAAAGGATACAAAACAGAATTTTCATCCAAGAATCCATTTGCTTCGATTATGTTCCTTCCATTAACTTTAAATCTTTTGCCGACTGTAAGGATGTCATCGCCAACGTTTATTGAATAAGTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E376834" ref_strand="+" ref_description="SGN-E376834 [TUS-19-L5]">
      <seq>cttgagacttggttctgatcagccattccctgagagagccattttgcatgtattcaaagacaagaaagaagcaacctttatgttcacaatagccacaaagctttattagattgaagtgattgatcttatgtagtatgttcacttctctagatacatccatgatcgccattttgactgctaaggtttcccctttaaaccctccccagtatacagatccctttatccggttcttggagtcaaagttttgcgtagcatgcttcaattctttaaacttaaaaaccttagggacatgatctatgttcgcgatctccacgaggatatcttcatgacttgaagacctcctcggaaatttgctatctcttttcttaaacaaagcaagaaggatgacccaagaaaccacaaagcctgttgcaactccactacctatgtaaagatttctctttgattttccctttgaagcattagctgcagatggaggtgaaaacgacctaataggttttctataattctcatttccggtatctaaatttgatggttcagaaggcaggggaattagaatggttgtaaaaggatacaaaacagaattttcatccaagaatccatttgcttcgattatgttccttccattaactttaaatcttttgccga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="16846" stop="18093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17146" g_stop="17793" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="648" r_length="648" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E376834" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17146" e_stop="17793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGAGACTTGGTTCTGATCAGCCATTCCCTGAGAGAGCCATTTTGCATGTATTCAAAGACAAGAAAGAAGCAACCTTTATGTTCACAATAGCCACAAAGCTTTATTAGATTGAAGTGATTGATCTTATGTAGTATGTTCACTTCTCTAGATACATCCATGATCGCCATTTTGACTGCTAAGGTTTCCCCTTTAAACCCTCCCCAGTATACAGATCCCTTTATCCGGTTCTTGGAGTCAAAGTTTTGCGTAGCATGCTTCAATTCTTTAAACTTAAAAACCTTAGGGACATGATCTATGTTCGCGATCTCCACGAGGATATCTTCATGACTTGAAGACCTCCTCGGAAATTTGCTATCTCTTTTCTTAAACAAAGCAAGAAGGATGACCCAAGAAACCACAAAGCCTGTTGCAACTCCACTACCTATGTAAAGATTTCTCTTTGATTTTCCCTTTGAAGCATTAGCTGCAGATGGAGGTGAAAACGACCTAATAGGTTTTCTATAATTCTCATTTCCGGTATCTAAATTTGATGGTTCAGAAGGCAGGGGAATTAGAATGGTTGTAAAAGGATACAAAACAGAATTTTCATCCAAGAATCCATTTGCTTCGATTATGTTCCTTCCATTAACTTTAAATCTTTTGCCGA</genome_strand>
        <mrna_strand>CTTGAGACTTGGTTCTGATCAGCCATTCCCTGAGAGAGCCATTTTGCATGTATTCAAAGACAAGAAAGAAGCAACCTTTATGTTCACAATAGCCACAAAGCTTTATTAGATTGAAGTGATTGATCTTATGTAGTATGTTCACTTCTCTAGATACATCCATGATCGCCATTTTGACTGCTAAGGTTTCCCCTTTAAACCCTCCCCAGTATACAGATCCCTTTATCCGGTTCTTGGAGTCAAAGTTTTGCGTAGCATGCTTCAATTCTTTAAACTTAAAAACCTTAGGGACATGATCTATGTTCGCGATCTCCACGAGGATATCTTCATGACTTGAAGACCTCCTCGGAAATTTGCTATCTCTTTTCTTAAACAAAGCAAGAAGGATGACCCAAGAAACCACAAAGCCTGTTGCAACTCCACTACCTATGTAAAGATTTCTCTTTGATTTTCCCTTTGAAGCATTAGCTGCAGATGGAGGTGAAAACGACCTAATAGGTTTTCTATAATTCTCATTTCCGGTATCTAAATTTGATGGTTCAGAAGGCAGGGGAATTAGAATGGTTGTAAAAGGATACAAAACAGAATTTTCATCCAAGAATCCATTTGCTTCGATTATGTTCCTTCCATTAACTTTAAATCTTTTGCCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231060" ref_strand="+" ref_description="SGN-E231060 [cLED-5-N17]">
      <seq>cttgagacttggttctgatcagccattccctgagagagccattttgcatgtattcaaagacaagaaagaagcaacctttatgttcacaatagccacaaagctttattagattgaagtgattgatcttatgtagtatgttcacttctctagatacatccatgatcgccattttgactgctaaggtttcccctttaaaccctccccagtatacagatccctttatccggttcttggagtcaaagttttgcgtagcatgcttcaattctttaaacttaaaaaccttagggacatgatctatgttcgcgatctccacgaggatatcttcatgacttgaagacctcctcggaaatttgctatctcttttcttaaacaaagcaagaaggatgacccaagaaaccacaaagcctgttgcaactccactacctatgtaaagatttctctttgattttccctttgaagcattagctgcagatggaggtgaaaacgacctaataggttttctataattctcatttccggtatctaaatttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="16846" stop="17978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17146" g_stop="17678" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E231060" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17146" e_stop="17678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGAGACTTGGTTCTGATCAGCCATTCCCTGAGAGAGCCATTTTGCATGTATTCAAAGACAAGAAAGAAGCAACCTTTATGTTCACAATAGCCACAAAGCTTTATTAGATTGAAGTGATTGATCTTATGTAGTATGTTCACTTCTCTAGATACATCCATGATCGCCATTTTGACTGCTAAGGTTTCCCCTTTAAACCCTCCCCAGTATACAGATCCCTTTATCCGGTTCTTGGAGTCAAAGTTTTGCGTAGCATGCTTCAATTCTTTAAACTTAAAAACCTTAGGGACATGATCTATGTTCGCGATCTCCACGAGGATATCTTCATGACTTGAAGACCTCCTCGGAAATTTGCTATCTCTTTTCTTAAACAAAGCAAGAAGGATGACCCAAGAAACCACAAAGCCTGTTGCAACTCCACTACCTATGTAAAGATTTCTCTTTGATTTTCCCTTTGAAGCATTAGCTGCAGATGGAGGTGAAAACGACCTAATAGGTTTTCTATAATTCTCATTTCCGGTATCTAAATTTGAT</genome_strand>
        <mrna_strand>CTTGAGACTTGGTTCTGATCAGCCATTCCCTGAGAGAGCCATTTTGCATGTATTCAAAGACAAGAAAGAAGCAACCTTTATGTTCACAATAGCCACAAAGCTTTATTAGATTGAAGTGATTGATCTTATGTAGTATGTTCACTTCTCTAGATACATCCATGATCGCCATTTTGACTGCTAAGGTTTCCCCTTTAAACCCTCCCCAGTATACAGATCCCTTTATCCGGTTCTTGGAGTCAAAGTTTTGCGTAGCATGCTTCAATTCTTTAAACTTAAAAACCTTAGGGACATGATCTATGTTCGCGATCTCCACGAGGATATCTTCATGACTTGAAGACCTCCTCGGAAATTTGCTATCTCTTTTCTTAAACAAAGCAAGAAGGATGACCCAAGAAACCACAAAGCCTGTTGCAACTCCACTACCTATGTAAAGATTTCTCTTTGATTTTCCCTTTGAAGCATTAGCTGCAGATGGAGGTGAAAACGACCTAATAGGTTTTCTATAATTCTCATTTCCGGTATCTAAATTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443936" ref_strand="+" ref_description="SGN-E443936 [cSTA-40-D16]">
      <seq>ttcatgtattcaaagacaagaaagaagcaacctttatgttcacaatagccacaaagctttattagattgaagtgattgatcttatgcagcatgttcacttctctagatacatccgtgatcgccattttgactgctaatatttcccctttaaaccctccccagtatacagatccctttatccggttcttggagtcaaagtttcgcgtagcatgcttcaattctttgaacttgaaaactttagggacatgatctatgttcgcgatctccacgaggatatcttcatgacttgaagacctcctcggaaattttctatcccttttcttaaacaaagcaagaaggatgacccaagaaaccacaagcagtaacagaacaaagcctgttgcaactccactacctatgtaaagatttctctttgattttccctttgaagcattagctgcaggtggaggtgaaaaggacctaataggttttctgtaattctcatttccggtatctaaatttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="16890" stop="17977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17190" g_stop="17677" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E443936" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E443936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17190" e_stop="17677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATGTATTCAAAGACAAGAAAGAAGCAACCTTTATGTTCACAATAGCCACAAAGCTTTATTAGATTGAAGTGATTGATCTTATGTAGTATGTTCACTTCTCTAGATACATCCATGATCGCCATTTTGACTGCTAAGGTTTCCCCTTTAAACCCTCCCCAGTATACAGATCCCTTTATCCGGTTCTTGGAGTCAAAGTTTTGCGTAGCATGCTTCAATTCTTTAAACTTAAAAACCTTAGGGACATGATCTATGTTCGCGATCTCCACGAGGATATCTTCATGACTTGAAGACCTCCTCGGAAATTTGCTATCTCTTTTCTTAAACAAAGCAAGAAGGATGACCCAAGAAA-C-C-A-CA--AA---------GCCTGTTGCAACTCCACTACCTATGTAAAGATTTCTCTTTGATTTTCCCTTTGAAGCATTAGCTGCAGATGGAGGTGAAAACGACCTAATAGGTTTTCTATAATTCTCATTTCCGGTATCTAAATTTGA</genome_strand>
        <mrna_strand>TTCATGTATTCAAAGACAAGAAAGAAGCAACCTTTATGTTCACAATAGCCACAAAGCTTTATTAGATTGAAGTGATTGATCTTATGCAGCATGTTCACTTCTCTAGATACATCCGTGATCGCCATTTTGACTGCTAATATTTCCCCTTTAAACCCTCCCCAGTATACAGATCCCTTTATCCGGTTCTTGGAGTCAAAGTTTCGCGTAGCATGCTTCAATTCTTTGAACTTGAAAACTTTAGGGACATGATCTATGTTCGCGATCTCCACGAGGATATCTTCATGACTTGAAGACCTCCTCGGAAATTTTCTATCCCTTTTCTTAAACAAAGCAAGAAGGATGACCCAAGAAACCACAAGCAGTAACAGAACAAAGCCTGTTGCAACTCCACTACCTATGTAAAGATTTCTCTTTGATTTTCCCTTTGAAGCATTAGCTGCAGGTGGAGGTGAAAAGGACCTAATAGGTTTTCTGTAATTCTCATTTCCGGTATCTAAATTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443854" ref_strand="+" ref_description="SGN-E443854 [cSTA-40-E10]">
      <seq>ttcatgtatccaaagacaagaaagaagcaacctttatggggacaatagccacaaagctttattagattgaagtgattgatcttatgcagcatgttcacttctctagatacatccgtgatcgccattttgactgctaatatttcccctttaaaccctccccagaatacagatccctttatccggttcttggagtcaaagtttcgcgtagcatgcttcaattctttgaacttgaaaactttacggacatgatctatgttcgcgatctccacgaggatatcttcatgacttgaagacctcctcggaaattttctatccctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="16890" stop="17809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17190" g_stop="17509" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E443854" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>320</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E443854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17190" e_stop="17509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATGTATTCAAAGACAAGAAAGAAGCAACCTTTATGTTCACAATAGCCACAAAGCTTTATTAGATTGAAGTGATTGATCTTATGTAGTATGTTCACTTCTCTAGATACATCCATGATCGCCATTTTGACTGCTAAGGTTTCCCCTTTAAACCCTCCCCAGTATACAGATCCCTTTATCCGGTTCTTGGAGTCAAAGTTTTGCGTAGCATGCTTCAATTCTTTAAACTTAAAAACCTTAGGGACATGATCTATGTTCGCGATCTCCACGAGGATATCTTCATGACTTGAAGACCTCCTCGGAAATTTGCTATCTCTTTT</genome_strand>
        <mrna_strand>TTCATGTATCCAAAGACAAGAAAGAAGCAACCTTTATGGGGACAATAGCCACAAAGCTTTATTAGATTGAAGTGATTGATCTTATGCAGCATGTTCACTTCTCTAGATACATCCGTGATCGCCATTTTGACTGCTAATATTTCCCCTTTAAACCCTCCCCAGAATACAGATCCCTTTATCCGGTTCTTGGAGTCAAAGTTTCGCGTAGCATGCTTCAATTCTTTGAACTTGAAAACTTTACGGACATGATCTATGTTCGCGATCTCCACGAGGATATCTTCATGACTTGAAGACCTCCTCGGAAATTTTCTATCCCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443939" ref_strand="+" ref_description="SGN-E443939 [cSTA-40-D24]">
      <seq>ttgaagtgattgatcttatgcagcatgttcacttttctagatacattcgtgatcgccattttgactgctaatatttcccctttaaaccctccccagtatacagatccctttatccggttcttggagtcaaagtttcgcgtagcatgctttcaattctttgaacttgaaaactttagggacatgatctatgttcgcgatctccacgaggatatcttcatgactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="16956" stop="17777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17256" g_stop="17477" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E443939" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>222</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E443939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17256" e_stop="17477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAGTGATTGATCTTATGTAGTATGTTCACTTCTCTAGATACATCCATGATCGCCATTTTGACTGCTAAGGTTTCCCCTTTAAACCCTCCCCAGTATACAGATCCCTTTATCCGGTTCTTGGAGTCAAAGTTTTGCGTAGCATGC-TTCAATTCTTTAAACTTAAAAACCTTAGGGACATGATCTATGTTCGCGATCTCCACGAGGATATCTTCATGACTT</genome_strand>
        <mrna_strand>TTGAAGTGATTGATCTTATGCAGCATGTTCACTTTTCTAGATACATTCGTGATCGCCATTTTGACTGCTAATATTTCCCCTTTAAACCCTCCCCAGTATACAGATCCCTTTATCCGGTTCTTGGAGTCAAAGTTTCGCGTAGCATGCTTTCAATTCTTTGAACTTGAAAACTTTAGGGACATGATCTATGTTCGCGATCTCCACGAGGATATCTTCATGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397691" ref_strand="+" ref_description="SGN-E397691 [TUS-46-D1]">
      <seq>agatattagaggatacctttctattaaaattctcatttcagcagcagcaggaggaggttcacataattttgggaaccatgattaagttgtttaaagtgaaggagaaacagagagagcttgctgaaaatgcaaatggaaagccaccaattaagaaacaaagtgcaggagagctgcgtcttcataaagatatcagtgaactaaatctacctgaaacgtgtagcatatcattccctaacggaaaagatgacctcatgaactttgaagtcaccattcggcctgatgaaggatattatgtgggtggaacttttgtcttctctttcagcatttcttctatttatcctcatgaggctccaaaggtcaagtgcaagacaaaggtttaccacccgaatattgacttggaaggtaatgtgtgtctcaacattcttcgagaagactggaaacctgtgctcaacatcaacacaataatctatggcttgtatcatttgttcacggaacccaatcaccga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="21610" stop="26659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21910" g_stop="21937" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21938" i_stop="22051" i_length="114">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22052" g_stop="22094" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="71" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22095" i_stop="24531" i_length="2437">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24532" g_stop="24646" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="186" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24647" i_stop="25768" i_length="1122">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25769" g_stop="25877" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="295" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25878" i_stop="26049" i_length="172">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26050" g_stop="26128" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="374" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26129" i_stop="26238" i_length="110">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26239" g_stop="26355" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="491" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="26356" i_stop="26434" i_length="79">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="26435" g_stop="26445" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="502" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E397691" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21910" e_stop="21937"/>
          <exon e_start="22052" e_stop="22094"/>
          <exon e_start="24532" e_stop="24646"/>
          <exon e_start="25769" e_stop="25877"/>
          <exon e_start="26050" e_stop="26128"/>
          <exon e_start="26239" e_stop="26355"/>
          <exon e_start="26435" e_stop="26445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACAATAGAGGATACCTTTCTATTAAAGTAAAAAAATAAATTATAATACATTAGTGTCCTTTTTTTTCTCAGATTCTCTTCTACTATTTTTCTCTATAAATATAGAGACTCCATCACTATTCTTCAATCTTCTTTTTGCAGATTCTCATTTCAGCAGCAGCAGGAGGAGGTTCACATAATTTTGGTATTTTCTTGAGCTATTTGCTATTACTTTTATCAGATTCAGCGATAAAAAGGGTTCTTTTACGTGTTTTTCTTTTTTGTTTTCAAGTTTTGTTCTTACCCAGATCGTGAAATCGACTGAATTATCGATGGTTGCTCTTTAATTTAAACCCCTTTTGATAAATTTGTTGATTTTGAAGAATTTTGTCCAGAAATTATGCTTCTTGGCGGCGTGTTTGATCTTAGTTGATATCAGTCTGTCTTGTTTGCTTTTAGTTGGGATTGACTGAATTTGTTGTTGTTGTTGCTGCTGCTGCTGCTGTTAACGTTTTAAGTTTGGGTAGTGGAAAGTGCTAGTATAGAGAACCTCTTAAAAAAAAGATGATTTTTTTTAGCATTATTAGATGTTGGTTGCTTGTTGATATGTTGTTCGGATTTTTCAAAAATGGCGCCTCGAATTCTCAAAAACAGCGCATTTTTGCTGGATTGTGATATGGGTGTGGCGTTGATTGCTCTAGTTTTGTTAAAGCTCAAGCCTTTCTTGTGTCTTCCCGAAATGATGGCACACCTGTGGGAAGCTACAATTGTGACATTATTTTTGGAGAGCCTGAGCACTATAGCCAGTTTGTGATCTTAACTTTTGAGCCTGAATAAGTGTTTGAAGCTACAATTGTTGCTTCCTAGTTTAATTGCTCTAGTTTTGTTAAAGCTCATGTATTTTCTTGTGTCTTTCCAAAATAATGGCACCTTCGTGGGAAGCTACAATTTCGGCATTATTTTTGGAGAGCCCGAGCAACATAGCCATTTGTGATCTTATTTTTGAGCCTGAATTAGTGTTTGAAGCTACAATTGTTGTTCCTAGTTTAATTGCTCTAGCCTCTGTTAAAGCTCAAGTATTTTCTTGTGTCTTTAACAGAAAAGGTGTAGCTTGATTGATGCTGAATTTTACTTTTGATTAGCAGAATTGTCCCAAGCTAGAGTTTGGTGCTGGGTCGTTCTATGCATGTCTGTTAAGATCTTTGTGTTTAGTTCTGGCCGAGAATAGATTCAGTGATAGTACCCGCAGTTGGAAAAATTAGTGGTATCCCAGAAGGTAATATTCATTATTGATCTACTCTTAATGTCCATAACCAGAAGTGAATTTATAACCTAAAACTGGGGCACATGAACTCGTGCTCTTTCCGTAGAACTAGGTATTTTATCTATACATTTTCTAAGGTCACGAGAAGGCTAAATGGTGCACTTGGTTGACTGTTGAGTTATTTATCTAGTGGACTGGGGATCAATCCTACTTGATGCAAATTTTCGTTCTTCCTTTTAGCAGTGCACCATGTTCTAGAAATCCTAGATTCGCCTCTGTCCATAACATACAACTTGAATTGTTTTATGTTAATTGATTTTTGGCCAGTGAATGGATATTATGAGATGATAATATCTCTAGTTAATCCTCTTTCATATTCCATCTATCAAAGTCCTTGAATAGCCTTCAATTGACTTGAATGACATTTACAATATTCAAATGGTTACACTTTCCAAAACTGAGCCATTGCCCATTATATTTTGTTGTCAGATGTTAGCATCTTTTCCCTTCTTTACTCCTATATATTCTCTATGTGTTTCCACTTTGTTAAGTGTGAAAAATCAAGAATCAATACTAAGAAACAAAGTCTCTTCTTCTCCATTTCTTGAGTGCTGGGTTTTCTTCTAAATAAATCTTTATAGTTTCTGTGTTTCTAGTTCTATACTAGAAGAGCTTATTGAATCATAGGGGACAGTGTCTTTGACATGCCTCAAGCTTTCAAGAGTTCTCGACAGGTTTCGTGATCAAGTATTTTCCATAAGAATCCAACACCAATTTCAAAGCTTAACTGGTAGTGAAAAAGAAATACAAAAAGTTAAAGTTCTATTTTTCTGCTTTAAAGCTCAGAAGAGTTATTGGAACATTACGCAGAAACATTGGCTATTTTAAAAGAAATGATTTTTATATTCTTTATTCATATTAGCACAGGAGGTTAGTTGATTCAGATGACTTACAAGCTCTAGATTGCAGATTTTGCAAGCGCATCCAAATATGTTAGAAGTAAAAGATCCATCCAAGTGATACCAACTAGCTGAGAATAATATATTAGTGTGTGTGAGGAATCCTTTTCATCTTGATTAGAGACTTGTATATCTCTATAAGAATAAATGTGAGATTTGAAGAACCTTTAGTTCAAGAGAACTTCTAATTTGCTTTATTATTCAATATTAAATGAACTTGAGTAGCATGTAATGATACATAGATTCATATTTTCGAACCCAAATACTTTGGGGCGGAGGCTTAGTTAACTGCTGGAATTTTTACGTACTTACTGTTCTGATTTGTACTTATAAATGAAAAAGATGGAGAAGATTTATTTTTCATGTATTTCATCTCTTAGTTCTTATTGTGGTTCAACGTATGCATTTTGCTTTTGCAGGGAACCATGATTAAGTTGTTTAAAGTGAAGGAGAAACAGAGAGAGCTTGCTGAAAATGCAAATGGAAAGCCACCAATTAAGAAACAAAGTGCAGGAGAGCTGCGTCTTCATAAAGGTATTTCCTTTTCAATTTCTTTGTAAAATCTTTTTTAATCAAATTAGTACTTTAAGCATTTCGTTTCATGCAAGGTAATTTGTTATATCTTTTAGCATGCCAAATTGGTCAATTTAGGTTTGATTAGCTAGGGTTTCATTTCAGTTGTTTGTTTACCTTCCTTAGAGATCTTCCATGTAAAGTTTCAGATGAAATAGTGCACTCTGATTATAATTTGAGACATGAGAAGTTGTGGTTGTCATGAACCAGTTTTCTCCTCTTTGGTATCATGGGAGCATGTGGAGTGTGTAGTAAATGTAGAAATGGCAAGAGAGAATGCAGTGCTTCCTGATAAAAAAAAAGTAATTGTTTTTAGAAAATGTAGTACTTTACTTGGAGGGGGTGGGTGTTGTTGATCTCAGGTATTTCACAAACAGTCTGTCCACCTGCTACAACTACAAGTTTACAGGCCCATGCTGTGTATTGCTAGAATCCAACGTGTGTGTTGAAGTGGATCCCTCGTGAAGTGGTTTTTTGTACAGTGAAGGTAAGAAGTGGAGGTTGGACTGTTGGAGGAGGGTAAGTGTAAATGGAGGCCAGAAGGCAGTGAAACTTTGAGTGCCCCCCAAATTCATATTACATCATTCACGGGTTTCCTCAAATCTCCCATGTATGCTGTAGAGATTTGACGTATACATTGTCATTTCTTTGTTGACTCCTTTTACTCGTATATAGGCGAAAATTTGTGTTATGTTTGACCATCCACTGTTGAAGATTGATGTTGCTTGAACCTCTATATGTGACAGCTAACTGCATATGACTCTCACATATATTGAAAGTTAAAAGTGAAGATTATTGTTGCTTGATGCAAAGCACTTTCTAGTGAAGGGGTTCTCTTCGTCTTTCTTTTGATTGATGAACTTTCTGATGGAAGTTCATGAATAATTGTGTCAGTTCCTTCCTTCATTGACTCATTCTCCGATTCATTATAGAATGTTTCCTCTTATAATAAAGAATCTATACAAAAGGGATTCATTTATATTTCTTTGTTCCAGGTGGTTCTTTTCTCCGACTATTTATTTGTCTTCTATTTTTTTCCACACCAATGAAGATGGCCTTAACGTTTTTTTAATTTCCCTGTAGATATCAGTGAACTAAATCTACCTGAAACGTGTAGCATATCATTCCCTAACGGAAAAGATGACCTCATGAACTTTGAAGTCACCATTCGGCCTGATGAAGGATATTATGTGTAAGTAGTTCTGCTGAAATTATTCTCTCTTTAATGAAGTATATTCCTGAAAAAAGTTTACTTCGACTTGGATATACCTTTCTGCTTTCGTATTTTTATGGAAAATTGGTGCACTTCAAGTTAGCTTTCCTCGGTGCTGATAACGTACATTGTATTATTTGTTCGTATTCAGGGGTGGAACTTTTGTCTTCTCTTTCAGCATTTCTTCTATTTATCCTCATGAGGCTCCAAAGGTCAAGTGCAAGACAAAGGTGGGTAATGGTTTATAGCTTTTTTTCTTTCGATTCTCTTTTAATTTCTTGAAGAATGAATTTAGATTCCAATTGTTTTATCCATAGCTCTGGAAACTCGGATTTTGCAGGTTTACCACCCGAATATTGACTTGGAAGGTAATGTGTGTCTCAACATTCTTCGAGAAGACTGGAAACCTGTGCTCAACATCAACACAATAATCTATGGCTTGTATCATTTGTTCACGGTACTTTAACTTCCTTCTAGTTTGATGTACTTTATGCTACTCTTAAGTAGTTGTTAGTTTATAACTTCCGCTTCTGCAGGAACCCAATCA</genome_strand>
        <mrna_strand>AGATATTAGAGGATACCTTTCTATTAAA..................................................................................................................ATTCTCATTTCAGCAGCAGCAGGAGGAGGTTCACATAATTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACCATGATTAAGTTGTTTAAAGTGAAGGAGAAACAGAGAGAGCTTGCTGAAAATGCAAATGGAAAGCCACCAATTAAGAAACAAAGTGCAGGAGAGCTGCGTCTTCATAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAGTGAACTAAATCTACCTGAAACGTGTAGCATATCATTCCCTAACGGAAAAGATGACCTCATGAACTTTGAAGTCACCATTCGGCCTGATGAAGGATATTATGT............................................................................................................................................................................GGGTGGAACTTTTGTCTTCTCTTTCAGCATTTCTTCTATTTATCCTCATGAGGCTCCAAAGGTCAAGTGCAAGACAAAG..............................................................................................................GTTTACCACCCGAATATTGACTTGGAAGGTAATGTGTGTCTCAACATTCTTCGAGAAGACTGGAAACCTGTGCTCAACATCAACACAATAATCTATGGCTTGTATCATTTGTTCACG...............................................................................GAACCCAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E275613" ref_strand="+" ref_description="SGN-E275613 [cLEN-10-L14]">
      <seq>gacaatagaggatacctttctattaaaattctcatttcagcagcagcaggaggaggttcacataattttgggaaccatgattaagttgtttaaagtgaaggagaaacagagagagcttgctgaaaatgcaaatggaaagccaccaattaagaaacaaagtgcaggagagctgcgtcttcataaagatatcagtgaactaaatctacctgaaacgtgtagcatatcattccctaacggaaaagatgacctcatgaactttgaagtcaccattcggcctgatgaaggatattatgtgggtggaacttttgtcttctctttcagcatttcttctatttatcctcatgaggctccaaaggtcaagtgcaagacaaaggtttaccacccgaatattgacttggaaggtaatgtgtgtctcaacattcttcgagaagactggaaacctgtgctcaacatcaacacaataatctatggcttgtatcatttgttcacggaacccaatcacgaggatcccctcaatcatgaagcagctgctgtgttgagtgacaaccccagcttgttcgagtccaatgtcagaagggcaatgtctggaggatatgtaggagaaacgttcttccaacgctgcatataaacgtctcagatgcagaatcgattagttgatgatgcttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="21611" stop="26911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21911" g_stop="21937" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21938" i_stop="22051" i_length="114">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22052" g_stop="22094" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="70" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22095" i_stop="24531" i_length="2437">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24532" g_stop="24646" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="185" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24647" i_stop="25768" i_length="1122">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25769" g_stop="25877" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="294" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25878" i_stop="26049" i_length="172">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26050" g_stop="26128" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="373" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26129" i_stop="26238" i_length="110">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26239" g_stop="26355" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="490" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="26356" i_stop="26434" i_length="79">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="26435" g_stop="26611" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="667" r_length="177" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E275613" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21911" e_stop="21937"/>
          <exon e_start="22052" e_stop="22094"/>
          <exon e_start="24532" e_stop="24646"/>
          <exon e_start="25769" e_stop="25877"/>
          <exon e_start="26050" e_stop="26128"/>
          <exon e_start="26239" e_stop="26355"/>
          <exon e_start="26435" e_stop="26611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAATAGAGGATACCTTTCTATTAAAGTAAAAAAATAAATTATAATACATTAGTGTCCTTTTTTTTCTCAGATTCTCTTCTACTATTTTTCTCTATAAATATAGAGACTCCATCACTATTCTTCAATCTTCTTTTTGCAGATTCTCATTTCAGCAGCAGCAGGAGGAGGTTCACATAATTTTGGTATTTTCTTGAGCTATTTGCTATTACTTTTATCAGATTCAGCGATAAAAAGGGTTCTTTTACGTGTTTTTCTTTTTTGTTTTCAAGTTTTGTTCTTACCCAGATCGTGAAATCGACTGAATTATCGATGGTTGCTCTTTAATTTAAACCCCTTTTGATAAATTTGTTGATTTTGAAGAATTTTGTCCAGAAATTATGCTTCTTGGCGGCGTGTTTGATCTTAGTTGATATCAGTCTGTCTTGTTTGCTTTTAGTTGGGATTGACTGAATTTGTTGTTGTTGTTGCTGCTGCTGCTGCTGTTAACGTTTTAAGTTTGGGTAGTGGAAAGTGCTAGTATAGAGAACCTCTTAAAAAAAAGATGATTTTTTTTAGCATTATTAGATGTTGGTTGCTTGTTGATATGTTGTTCGGATTTTTCAAAAATGGCGCCTCGAATTCTCAAAAACAGCGCATTTTTGCTGGATTGTGATATGGGTGTGGCGTTGATTGCTCTAGTTTTGTTAAAGCTCAAGCCTTTCTTGTGTCTTCCCGAAATGATGGCACACCTGTGGGAAGCTACAATTGTGACATTATTTTTGGAGAGCCTGAGCACTATAGCCAGTTTGTGATCTTAACTTTTGAGCCTGAATAAGTGTTTGAAGCTACAATTGTTGCTTCCTAGTTTAATTGCTCTAGTTTTGTTAAAGCTCATGTATTTTCTTGTGTCTTTCCAAAATAATGGCACCTTCGTGGGAAGCTACAATTTCGGCATTATTTTTGGAGAGCCCGAGCAACATAGCCATTTGTGATCTTATTTTTGAGCCTGAATTAGTGTTTGAAGCTACAATTGTTGTTCCTAGTTTAATTGCTCTAGCCTCTGTTAAAGCTCAAGTATTTTCTTGTGTCTTTAACAGAAAAGGTGTAGCTTGATTGATGCTGAATTTTACTTTTGATTAGCAGAATTGTCCCAAGCTAGAGTTTGGTGCTGGGTCGTTCTATGCATGTCTGTTAAGATCTTTGTGTTTAGTTCTGGCCGAGAATAGATTCAGTGATAGTACCCGCAGTTGGAAAAATTAGTGGTATCCCAGAAGGTAATATTCATTATTGATCTACTCTTAATGTCCATAACCAGAAGTGAATTTATAACCTAAAACTGGGGCACATGAACTCGTGCTCTTTCCGTAGAACTAGGTATTTTATCTATACATTTTCTAAGGTCACGAGAAGGCTAAATGGTGCACTTGGTTGACTGTTGAGTTATTTATCTAGTGGACTGGGGATCAATCCTACTTGATGCAAATTTTCGTTCTTCCTTTTAGCAGTGCACCATGTTCTAGAAATCCTAGATTCGCCTCTGTCCATAACATACAACTTGAATTGTTTTATGTTAATTGATTTTTGGCCAGTGAATGGATATTATGAGATGATAATATCTCTAGTTAATCCTCTTTCATATTCCATCTATCAAAGTCCTTGAATAGCCTTCAATTGACTTGAATGACATTTACAATATTCAAATGGTTACACTTTCCAAAACTGAGCCATTGCCCATTATATTTTGTTGTCAGATGTTAGCATCTTTTCCCTTCTTTACTCCTATATATTCTCTATGTGTTTCCACTTTGTTAAGTGTGAAAAATCAAGAATCAATACTAAGAAACAAAGTCTCTTCTTCTCCATTTCTTGAGTGCTGGGTTTTCTTCTAAATAAATCTTTATAGTTTCTGTGTTTCTAGTTCTATACTAGAAGAGCTTATTGAATCATAGGGGACAGTGTCTTTGACATGCCTCAAGCTTTCAAGAGTTCTCGACAGGTTTCGTGATCAAGTATTTTCCATAAGAATCCAACACCAATTTCAAAGCTTAACTGGTAGTGAAAAAGAAATACAAAAAGTTAAAGTTCTATTTTTCTGCTTTAAAGCTCAGAAGAGTTATTGGAACATTACGCAGAAACATTGGCTATTTTAAAAGAAATGATTTTTATATTCTTTATTCATATTAGCACAGGAGGTTAGTTGATTCAGATGACTTACAAGCTCTAGATTGCAGATTTTGCAAGCGCATCCAAATATGTTAGAAGTAAAAGATCCATCCAAGTGATACCAACTAGCTGAGAATAATATATTAGTGTGTGTGAGGAATCCTTTTCATCTTGATTAGAGACTTGTATATCTCTATAAGAATAAATGTGAGATTTGAAGAACCTTTAGTTCAAGAGAACTTCTAATTTGCTTTATTATTCAATATTAAATGAACTTGAGTAGCATGTAATGATACATAGATTCATATTTTCGAACCCAAATACTTTGGGGCGGAGGCTTAGTTAACTGCTGGAATTTTTACGTACTTACTGTTCTGATTTGTACTTATAAATGAAAAAGATGGAGAAGATTTATTTTTCATGTATTTCATCTCTTAGTTCTTATTGTGGTTCAACGTATGCATTTTGCTTTTGCAGGGAACCATGATTAAGTTGTTTAAAGTGAAGGAGAAACAGAGAGAGCTTGCTGAAAATGCAAATGGAAAGCCACCAATTAAGAAACAAAGTGCAGGAGAGCTGCGTCTTCATAAAGGTATTTCCTTTTCAATTTCTTTGTAAAATCTTTTTTAATCAAATTAGTACTTTAAGCATTTCGTTTCATGCAAGGTAATTTGTTATATCTTTTAGCATGCCAAATTGGTCAATTTAGGTTTGATTAGCTAGGGTTTCATTTCAGTTGTTTGTTTACCTTCCTTAGAGATCTTCCATGTAAAGTTTCAGATGAAATAGTGCACTCTGATTATAATTTGAGACATGAGAAGTTGTGGTTGTCATGAACCAGTTTTCTCCTCTTTGGTATCATGGGAGCATGTGGAGTGTGTAGTAAATGTAGAAATGGCAAGAGAGAATGCAGTGCTTCCTGATAAAAAAAAAGTAATTGTTTTTAGAAAATGTAGTACTTTACTTGGAGGGGGTGGGTGTTGTTGATCTCAGGTATTTCACAAACAGTCTGTCCACCTGCTACAACTACAAGTTTACAGGCCCATGCTGTGTATTGCTAGAATCCAACGTGTGTGTTGAAGTGGATCCCTCGTGAAGTGGTTTTTTGTACAGTGAAGGTAAGAAGTGGAGGTTGGACTGTTGGAGGAGGGTAAGTGTAAATGGAGGCCAGAAGGCAGTGAAACTTTGAGTGCCCCCCAAATTCATATTACATCATTCACGGGTTTCCTCAAATCTCCCATGTATGCTGTAGAGATTTGACGTATACATTGTCATTTCTTTGTTGACTCCTTTTACTCGTATATAGGCGAAAATTTGTGTTATGTTTGACCATCCACTGTTGAAGATTGATGTTGCTTGAACCTCTATATGTGACAGCTAACTGCATATGACTCTCACATATATTGAAAGTTAAAAGTGAAGATTATTGTTGCTTGATGCAAAGCACTTTCTAGTGAAGGGGTTCTCTTCGTCTTTCTTTTGATTGATGAACTTTCTGATGGAAGTTCATGAATAATTGTGTCAGTTCCTTCCTTCATTGACTCATTCTCCGATTCATTATAGAATGTTTCCTCTTATAATAAAGAATCTATACAAAAGGGATTCATTTATATTTCTTTGTTCCAGGTGGTTCTTTTCTCCGACTATTTATTTGTCTTCTATTTTTTTCCACACCAATGAAGATGGCCTTAACGTTTTTTTAATTTCCCTGTAGATATCAGTGAACTAAATCTACCTGAAACGTGTAGCATATCATTCCCTAACGGAAAAGATGACCTCATGAACTTTGAAGTCACCATTCGGCCTGATGAAGGATATTATGTGTAAGTAGTTCTGCTGAAATTATTCTCTCTTTAATGAAGTATATTCCTGAAAAAAGTTTACTTCGACTTGGATATACCTTTCTGCTTTCGTATTTTTATGGAAAATTGGTGCACTTCAAGTTAGCTTTCCTCGGTGCTGATAACGTACATTGTATTATTTGTTCGTATTCAGGGGTGGAACTTTTGTCTTCTCTTTCAGCATTTCTTCTATTTATCCTCATGAGGCTCCAAAGGTCAAGTGCAAGACAAAGGTGGGTAATGGTTTATAGCTTTTTTTCTTTCGATTCTCTTTTAATTTCTTGAAGAATGAATTTAGATTCCAATTGTTTTATCCATAGCTCTGGAAACTCGGATTTTGCAGGTTTACCACCCGAATATTGACTTGGAAGGTAATGTGTGTCTCAACATTCTTCGAGAAGACTGGAAACCTGTGCTCAACATCAACACAATAATCTATGGCTTGTATCATTTGTTCACGGTACTTTAACTTCCTTCTAGTTTGATGTACTTTATGCTACTCTTAAGTAGTTGTTAGTTTATAACTTCCGCTTCTGCAGGAACCCAATCACGAGGATCCCCTCAATCATGAAGCAGCTGCTGTGTTGAGTGACAACCCCAGCTTGTTCGAGTCCAATGTCAGAAGGGCAATGTCTGGAGGATATGTAGGAGAAACGTTCTTCCAACGCTGCATATAAACGTCTCAGATGCAGAATCGATTAGTTGATGATGCTTAC</genome_strand>
        <mrna_strand>GACAATAGAGGATACCTTTCTATTAAA..................................................................................................................ATTCTCATTTCAGCAGCAGCAGGAGGAGGTTCACATAATTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACCATGATTAAGTTGTTTAAAGTGAAGGAGAAACAGAGAGAGCTTGCTGAAAATGCAAATGGAAAGCCACCAATTAAGAAACAAAGTGCAGGAGAGCTGCGTCTTCATAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAGTGAACTAAATCTACCTGAAACGTGTAGCATATCATTCCCTAACGGAAAAGATGACCTCATGAACTTTGAAGTCACCATTCGGCCTGATGAAGGATATTATGT............................................................................................................................................................................GGGTGGAACTTTTGTCTTCTCTTTCAGCATTTCTTCTATTTATCCTCATGAGGCTCCAAAGGTCAAGTGCAAGACAAAG..............................................................................................................GTTTACCACCCGAATATTGACTTGGAAGGTAATGTGTGTCTCAACATTCTTCGAGAAGACTGGAAACCTGTGCTCAACATCAACACAATAATCTATGGCTTGTATCATTTGTTCACG...............................................................................GAACCCAATCACGAGGATCCCCTCAATCATGAAGCAGCTGCTGTGTTGAGTGACAACCCCAGCTTGTTCGAGTCCAATGTCAGAAGGGCAATGTCTGGAGGATATGTAGGAGAAACGTTCTTCCAACGCTGCATATAAACGTCTCAGATGCAGAATCGATTAGTTGATGATGCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699566" ref_strand="+" ref_description="SGN-E699566 [FA10CB08]">
      <seq>tcattcgagtctcctatttttctctataaatatagagactccccctttattcttcaatcttctttttgcagattctcatttcagcagcagcaggaggaggttcacataattttgggaaccatgattaagttgtttaaagtgaaggagaaacagagagagcttgctgaaaatgcaaatggaaagccaccaattaagaaacaaagtgcaggagagctgcgtcttcataaagatatcagtgaactaaatctacctgaaacgtgtagcatatcattccctaacggaaaagatgacctcatgaactttgaagtcaccattcggcctgatgaaggatattatgtgggtggaacttttgtcttctctttcagcatttcttctatttatcctcatgaggctccaaaggtcaagtgcaagacaaaggtttaccacccgaatattgacttggaaggtaatgtgtgtctcaacattcttcgagaagactggaaacctgtgctcaacatcaacacaataatctatggcttgtatcatttgttcacggaacccaatcacgaggatcccctcaatcatgaagcagctgctgtgttgagtgacaaccccagcttgttcgagtccaatgtcagaagggcaatgtctggaggatatgtaggagaaacgttcttccaacgctgcatataaacgtctcagatgcagaatcgattagttgatgatgcttacaccagaagttgaaggctctgaaagtctgtgaagttgggaccaggaagaaccatttttacatgtgaaaaagatttgagtgcaaaaatgttattagatatttgcaaaacttaaaacctgcagaacgttttctgtatgtaagtgttaaaactgaagctgtttagaagaccctttgcctggatgaatttatgtacaatctgaaactatgttttcgcgatcctgccgcctcaattatcgtattattttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="21690" stop="27154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21981" g_stop="22094" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22095" i_stop="24531" i_length="2437">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24532" g_stop="24646" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="229" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24647" i_stop="25768" i_length="1122">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25769" g_stop="25877" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="338" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25878" i_stop="26049" i_length="172">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26050" g_stop="26128" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="417" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26129" i_stop="26238" i_length="110">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26239" g_stop="26355" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="534" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26356" i_stop="26434" i_length="79">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26435" g_stop="26851" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="953" r_length="419" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="955" polyA_stop="968"/>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E699566" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>951</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21981" e_stop="22094"/>
          <exon e_start="24532" e_stop="24646"/>
          <exon e_start="25769" e_stop="25877"/>
          <exon e_start="26050" e_stop="26128"/>
          <exon e_start="26239" e_stop="26355"/>
          <exon e_start="26435" e_stop="26851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTCTCTTCTACTATTTTTCTCTATAAATATAGAGACTCCATCACTATTCTTCAATCTTCTTTTTGCAGATTCTCATTTCAGCAGCAGCAGGAGGAGGTTCACATAATTTTGGTATTTTCTTGAGCTATTTGCTATTACTTTTATCAGATTCAGCGATAAAAAGGGTTCTTTTACGTGTTTTTCTTTTTTGTTTTCAAGTTTTGTTCTTACCCAGATCGTGAAATCGACTGAATTATCGATGGTTGCTCTTTAATTTAAACCCCTTTTGATAAATTTGTTGATTTTGAAGAATTTTGTCCAGAAATTATGCTTCTTGGCGGCGTGTTTGATCTTAGTTGATATCAGTCTGTCTTGTTTGCTTTTAGTTGGGATTGACTGAATTTGTTGTTGTTGTTGCTGCTGCTGCTGCTGTTAACGTTTTAAGTTTGGGTAGTGGAAAGTGCTAGTATAGAGAACCTCTTAAAAAAAAGATGATTTTTTTTAGCATTATTAGATGTTGGTTGCTTGTTGATATGTTGTTCGGATTTTTCAAAAATGGCGCCTCGAATTCTCAAAAACAGCGCATTTTTGCTGGATTGTGATATGGGTGTGGCGTTGATTGCTCTAGTTTTGTTAAAGCTCAAGCCTTTCTTGTGTCTTCCCGAAATGATGGCACACCTGTGGGAAGCTACAATTGTGACATTATTTTTGGAGAGCCTGAGCACTATAGCCAGTTTGTGATCTTAACTTTTGAGCCTGAATAAGTGTTTGAAGCTACAATTGTTGCTTCCTAGTTTAATTGCTCTAGTTTTGTTAAAGCTCATGTATTTTCTTGTGTCTTTCCAAAATAATGGCACCTTCGTGGGAAGCTACAATTTCGGCATTATTTTTGGAGAGCCCGAGCAACATAGCCATTTGTGATCTTATTTTTGAGCCTGAATTAGTGTTTGAAGCTACAATTGTTGTTCCTAGTTTAATTGCTCTAGCCTCTGTTAAAGCTCAAGTATTTTCTTGTGTCTTTAACAGAAAAGGTGTAGCTTGATTGATGCTGAATTTTACTTTTGATTAGCAGAATTGTCCCAAGCTAGAGTTTGGTGCTGGGTCGTTCTATGCATGTCTGTTAAGATCTTTGTGTTTAGTTCTGGCCGAGAATAGATTCAGTGATAGTACCCGCAGTTGGAAAAATTAGTGGTATCCCAGAAGGTAATATTCATTATTGATCTACTCTTAATGTCCATAACCAGAAGTGAATTTATAACCTAAAACTGGGGCACATGAACTCGTGCTCTTTCCGTAGAACTAGGTATTTTATCTATACATTTTCTAAGGTCACGAGAAGGCTAAATGGTGCACTTGGTTGACTGTTGAGTTATTTATCTAGTGGACTGGGGATCAATCCTACTTGATGCAAATTTTCGTTCTTCCTTTTAGCAGTGCACCATGTTCTAGAAATCCTAGATTCGCCTCTGTCCATAACATACAACTTGAATTGTTTTATGTTAATTGATTTTTGGCCAGTGAATGGATATTATGAGATGATAATATCTCTAGTTAATCCTCTTTCATATTCCATCTATCAAAGTCCTTGAATAGCCTTCAATTGACTTGAATGACATTTACAATATTCAAATGGTTACACTTTCCAAAACTGAGCCATTGCCCATTATATTTTGTTGTCAGATGTTAGCATCTTTTCCCTTCTTTACTCCTATATATTCTCTATGTGTTTCCACTTTGTTAAGTGTGAAAAATCAAGAATCAATACTAAGAAACAAAGTCTCTTCTTCTCCATTTCTTGAGTGCTGGGTTTTCTTCTAAATAAATCTTTATAGTTTCTGTGTTTCTAGTTCTATACTAGAAGAGCTTATTGAATCATAGGGGACAGTGTCTTTGACATGCCTCAAGCTTTCAAGAGTTCTCGACAGGTTTCGTGATCAAGTATTTTCCATAAGAATCCAACACCAATTTCAAAGCTTAACTGGTAGTGAAAAAGAAATACAAAAAGTTAAAGTTCTATTTTTCTGCTTTAAAGCTCAGAAGAGTTATTGGAACATTACGCAGAAACATTGGCTATTTTAAAAGAAATGATTTTTATATTCTTTATTCATATTAGCACAGGAGGTTAGTTGATTCAGATGACTTACAAGCTCTAGATTGCAGATTTTGCAAGCGCATCCAAATATGTTAGAAGTAAAAGATCCATCCAAGTGATACCAACTAGCTGAGAATAATATATTAGTGTGTGTGAGGAATCCTTTTCATCTTGATTAGAGACTTGTATATCTCTATAAGAATAAATGTGAGATTTGAAGAACCTTTAGTTCAAGAGAACTTCTAATTTGCTTTATTATTCAATATTAAATGAACTTGAGTAGCATGTAATGATACATAGATTCATATTTTCGAACCCAAATACTTTGGGGCGGAGGCTTAGTTAACTGCTGGAATTTTTACGTACTTACTGTTCTGATTTGTACTTATAAATGAAAAAGATGGAGAAGATTTATTTTTCATGTATTTCATCTCTTAGTTCTTATTGTGGTTCAACGTATGCATTTTGCTTTTGCAGGGAACCATGATTAAGTTGTTTAAAGTGAAGGAGAAACAGAGAGAGCTTGCTGAAAATGCAAATGGAAAGCCACCAATTAAGAAACAAAGTGCAGGAGAGCTGCGTCTTCATAAAGGTATTTCCTTTTCAATTTCTTTGTAAAATCTTTTTTAATCAAATTAGTACTTTAAGCATTTCGTTTCATGCAAGGTAATTTGTTATATCTTTTAGCATGCCAAATTGGTCAATTTAGGTTTGATTAGCTAGGGTTTCATTTCAGTTGTTTGTTTACCTTCCTTAGAGATCTTCCATGTAAAGTTTCAGATGAAATAGTGCACTCTGATTATAATTTGAGACATGAGAAGTTGTGGTTGTCATGAACCAGTTTTCTCCTCTTTGGTATCATGGGAGCATGTGGAGTGTGTAGTAAATGTAGAAATGGCAAGAGAGAATGCAGTGCTTCCTGATAAAAAAAAAGTAATTGTTTTTAGAAAATGTAGTACTTTACTTGGAGGGGGTGGGTGTTGTTGATCTCAGGTATTTCACAAACAGTCTGTCCACCTGCTACAACTACAAGTTTACAGGCCCATGCTGTGTATTGCTAGAATCCAACGTGTGTGTTGAAGTGGATCCCTCGTGAAGTGGTTTTTTGTACAGTGAAGGTAAGAAGTGGAGGTTGGACTGTTGGAGGAGGGTAAGTGTAAATGGAGGCCAGAAGGCAGTGAAACTTTGAGTGCCCCCCAAATTCATATTACATCATTCACGGGTTTCCTCAAATCTCCCATGTATGCTGTAGAGATTTGACGTATACATTGTCATTTCTTTGTTGACTCCTTTTACTCGTATATAGGCGAAAATTTGTGTTATGTTTGACCATCCACTGTTGAAGATTGATGTTGCTTGAACCTCTATATGTGACAGCTAACTGCATATGACTCTCACATATATTGAAAGTTAAAAGTGAAGATTATTGTTGCTTGATGCAAAGCACTTTCTAGTGAAGGGGTTCTCTTCGTCTTTCTTTTGATTGATGAACTTTCTGATGGAAGTTCATGAATAATTGTGTCAGTTCCTTCCTTCATTGACTCATTCTCCGATTCATTATAGAATGTTTCCTCTTATAATAAAGAATCTATACAAAAGGGATTCATTTATATTTCTTTGTTCCAGGTGGTTCTTTTCTCCGACTATTTATTTGTCTTCTATTTTTTTCCACACCAATGAAGATGGCCTTAACGTTTTTTTAATTTCCCTGTAGATATCAGTGAACTAAATCTACCTGAAACGTGTAGCATATCATTCCCTAACGGAAAAGATGACCTCATGAACTTTGAAGTCACCATTCGGCCTGATGAAGGATATTATGTGTAAGTAGTTCTGCTGAAATTATTCTCTCTTTAATGAAGTATATTCCTGAAAAAAGTTTACTTCGACTTGGATATACCTTTCTGCTTTCGTATTTTTATGGAAAATTGGTGCACTTCAAGTTAGCTTTCCTCGGTGCTGATAACGTACATTGTATTATTTGTTCGTATTCAGGGGTGGAACTTTTGTCTTCTCTTTCAGCATTTCTTCTATTTATCCTCATGAGGCTCCAAAGGTCAAGTGCAAGACAAAGGTGGGTAATGGTTTATAGCTTTTTTTCTTTCGATTCTCTTTTAATTTCTTGAAGAATGAATTTAGATTCCAATTGTTTTATCCATAGCTCTGGAAACTCGGATTTTGCAGGTTTACCACCCGAATATTGACTTGGAAGGTAATGTGTGTCTCAACATTCTTCGAGAAGACTGGAAACCTGTGCTCAACATCAACACAATAATCTATGGCTTGTATCATTTGTTCACGGTACTTTAACTTCCTTCTAGTTTGATGTACTTTATGCTACTCTTAAGTAGTTGTTAGTTTATAACTTCCGCTTCTGCAGGAACCCAATCACGAGGATCCCCTCAATCATGAAGCAGCTGCTGTGTTGAGTGACAACCCCAGCTTGTTCGAGTCCAATGTCAGAAGGGCAATGTCTGGAGGATATGTAGGAGAAACGTTCTTCCAACGCTGCATATAAACGTCTCAGATGCAGAATCGATTAGTTGATGATGCTTACACCAGAAGTTGAAGGCTCTGAAAGTCTGTGAAGTTGGGACCAGGAAGAACCATTTTTACATGTGAAAAAGATTTGAGTGCAAAAATGTTATTAGATATTTGCAAAACTTAAAACCTGCAGAACGTTTTCTGTATGTAAGTGTTAAAACTGAAGCTGTTAAG-AGACCCTTTGCCTGGATGAATTTATGTACAATCTGAACTTATGTTTTCGCGATCTTG-CGCTTCAATTATCGTATTATTT</genome_strand>
        <mrna_strand>TCATTCGAGTCTCCTATTTTTCTCTATAAATATAGAGACTCCCCCTTTATTCTTCAATCTTCTTTTTGCAGATTCTCATTTCAGCAGCAGCAGGAGGAGGTTCACATAATTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACCATGATTAAGTTGTTTAAAGTGAAGGAGAAACAGAGAGAGCTTGCTGAAAATGCAAATGGAAAGCCACCAATTAAGAAACAAAGTGCAGGAGAGCTGCGTCTTCATAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAGTGAACTAAATCTACCTGAAACGTGTAGCATATCATTCCCTAACGGAAAAGATGACCTCATGAACTTTGAAGTCACCATTCGGCCTGATGAAGGATATTATGT............................................................................................................................................................................GGGTGGAACTTTTGTCTTCTCTTTCAGCATTTCTTCTATTTATCCTCATGAGGCTCCAAAGGTCAAGTGCAAGACAAAG..............................................................................................................GTTTACCACCCGAATATTGACTTGGAAGGTAATGTGTGTCTCAACATTCTTCGAGAAGACTGGAAACCTGTGCTCAACATCAACACAATAATCTATGGCTTGTATCATTTGTTCACG...............................................................................GAACCCAATCACGAGGATCCCCTCAATCATGAAGCAGCTGCTGTGTTGAGTGACAACCCCAGCTTGTTCGAGTCCAATGTCAGAAGGGCAATGTCTGGAGGATATGTAGGAGAAACGTTCTTCCAACGCTGCATATAAACGTCTCAGATGCAGAATCGATTAGTTGATGATGCTTACACCAGAAGTTGAAGGCTCTGAAAGTCTGTGAAGTTGGGACCAGGAAGAACCATTTTTACATGTGAAAAAGATTTGAGTGCAAAAATGTTATTAGATATTTGCAAAACTTAAAACCTGCAGAACGTTTTCTGTATGTAAGTGTTAAAACTGAAGCTGTTTAGAAGACCCTTTGCCTGGATGAATTTATGTACAATCTGAAACTATGTTTTCGCGATCCTGCCGCCTCAATTATCGTATTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E622184" ref_strand="+" ref_description="SGN-E622184 [72548]">
      <seq>ctcttctatactatttttctctccatgtataanatagagagacccgtcattcttcttcaatcttttttgcagattctcatttcagcagcagcagcagcaggttcacataattttgggaccatgattaagctatttaaagtaaaggagaaacagagagagcttgctgaaaatgctaatggaaagcctccaattaagaaacaaagtgcaggagagctgcgtcttcataaagatatcagtgaactaaatctacctaaaacgtgtagcatatcattccctaacggaaaagatgacctcatgaactttgaagtcaccattcggcctgatgacggatattatatgggtggaacttttgtcttctctttcagcatttcttctatttatcctcatgaggctccaaaagtcaagtgcaagacgaaggtttaccacccgaatattgacttggaaggaaatgtatgtctcaacattcttcgagaagactggaaacctgtgctcaacatcaacacagtaatctatggcttgtatcatctgttcacggaacccaatcacgaggatcccctcaatcatgaagcagctgctgtgttgagtgacaacccgagcatgttcgagtctaatgtcagaagggcaatgtctggaggatatgtagggcaaacgtacttccaaacgctgcatgtaatgtctcaaatgcagaatcaattagttgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="21684" stop="26872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22016" g_stop="22094" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="115" r_length="76" r_score="0.899"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22095" i_stop="24531" i_length="2437">
            <donor d_prob="0.941" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24532" g_stop="24646" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="229" r_length="114" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24647" i_stop="25768" i_length="1122">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.914" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25769" g_stop="25877" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="338" r_length="109" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25878" i_stop="26049" i_length="172">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26050" g_stop="26128" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="417" r_length="79" r_score="0.975"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26129" i_stop="26238" i_length="110">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.977" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26239" g_stop="26355" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="534" r_length="117" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26356" i_stop="26434" i_length="79">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26435" g_stop="26605" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="705" r_length="171" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E622184" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E622184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22016" e_stop="22094"/>
          <exon e_start="24532" e_stop="24646"/>
          <exon e_start="25769" e_stop="25877"/>
          <exon e_start="26050" e_stop="26128"/>
          <exon e_start="26239" e_stop="26355"/>
          <exon e_start="26435" e_stop="26605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTCCATCACTATTCTTCAATCTTCTTTTTGCAGATTCTCATTTCAGCAGCAGCAGGAGGAGGTTCACATAATTTTGGTATTTTCTTGAGCTATTTGCTATTACTTTTATCAGATTCAGCGATAAAAAGGGTTCTTTTACGTGTTTTTCTTTTTTGTTTTCAAGTTTTGTTCTTACCCAGATCGTGAAATCGACTGAATTATCGATGGTTGCTCTTTAATTTAAACCCCTTTTGATAAATTTGTTGATTTTGAAGAATTTTGTCCAGAAATTATGCTTCTTGGCGGCGTGTTTGATCTTAGTTGATATCAGTCTGTCTTGTTTGCTTTTAGTTGGGATTGACTGAATTTGTTGTTGTTGTTGCTGCTGCTGCTGCTGTTAACGTTTTAAGTTTGGGTAGTGGAAAGTGCTAGTATAGAGAACCTCTTAAAAAAAAGATGATTTTTTTTAGCATTATTAGATGTTGGTTGCTTGTTGATATGTTGTTCGGATTTTTCAAAAATGGCGCCTCGAATTCTCAAAAACAGCGCATTTTTGCTGGATTGTGATATGGGTGTGGCGTTGATTGCTCTAGTTTTGTTAAAGCTCAAGCCTTTCTTGTGTCTTCCCGAAATGATGGCACACCTGTGGGAAGCTACAATTGTGACATTATTTTTGGAGAGCCTGAGCACTATAGCCAGTTTGTGATCTTAACTTTTGAGCCTGAATAAGTGTTTGAAGCTACAATTGTTGCTTCCTAGTTTAATTGCTCTAGTTTTGTTAAAGCTCATGTATTTTCTTGTGTCTTTCCAAAATAATGGCACCTTCGTGGGAAGCTACAATTTCGGCATTATTTTTGGAGAGCCCGAGCAACATAGCCATTTGTGATCTTATTTTTGAGCCTGAATTAGTGTTTGAAGCTACAATTGTTGTTCCTAGTTTAATTGCTCTAGCCTCTGTTAAAGCTCAAGTATTTTCTTGTGTCTTTAACAGAAAAGGTGTAGCTTGATTGATGCTGAATTTTACTTTTGATTAGCAGAATTGTCCCAAGCTAGAGTTTGGTGCTGGGTCGTTCTATGCATGTCTGTTAAGATCTTTGTGTTTAGTTCTGGCCGAGAATAGATTCAGTGATAGTACCCGCAGTTGGAAAAATTAGTGGTATCCCAGAAGGTAATATTCATTATTGATCTACTCTTAATGTCCATAACCAGAAGTGAATTTATAACCTAAAACTGGGGCACATGAACTCGTGCTCTTTCCGTAGAACTAGGTATTTTATCTATACATTTTCTAAGGTCACGAGAAGGCTAAATGGTGCACTTGGTTGACTGTTGAGTTATTTATCTAGTGGACTGGGGATCAATCCTACTTGATGCAAATTTTCGTTCTTCCTTTTAGCAGTGCACCATGTTCTAGAAATCCTAGATTCGCCTCTGTCCATAACATACAACTTGAATTGTTTTATGTTAATTGATTTTTGGCCAGTGAATGGATATTATGAGATGATAATATCTCTAGTTAATCCTCTTTCATATTCCATCTATCAAAGTCCTTGAATAGCCTTCAATTGACTTGAATGACATTTACAATATTCAAATGGTTACACTTTCCAAAACTGAGCCATTGCCCATTATATTTTGTTGTCAGATGTTAGCATCTTTTCCCTTCTTTACTCCTATATATTCTCTATGTGTTTCCACTTTGTTAAGTGTGAAAAATCAAGAATCAATACTAAGAAACAAAGTCTCTTCTTCTCCATTTCTTGAGTGCTGGGTTTTCTTCTAAATAAATCTTTATAGTTTCTGTGTTTCTAGTTCTATACTAGAAGAGCTTATTGAATCATAGGGGACAGTGTCTTTGACATGCCTCAAGCTTTCAAGAGTTCTCGACAGGTTTCGTGATCAAGTATTTTCCATAAGAATCCAACACCAATTTCAAAGCTTAACTGGTAGTGAAAAAGAAATACAAAAAGTTAAAGTTCTATTTTTCTGCTTTAAAGCTCAGAAGAGTTATTGGAACATTACGCAGAAACATTGGCTATTTTAAAAGAAATGATTTTTATATTCTTTATTCATATTAGCACAGGAGGTTAGTTGATTCAGATGACTTACAAGCTCTAGATTGCAGATTTTGCAAGCGCATCCAAATATGTTAGAAGTAAAAGATCCATCCAAGTGATACCAACTAGCTGAGAATAATATATTAGTGTGTGTGAGGAATCCTTTTCATCTTGATTAGAGACTTGTATATCTCTATAAGAATAAATGTGAGATTTGAAGAACCTTTAGTTCAAGAGAACTTCTAATTTGCTTTATTATTCAATATTAAATGAACTTGAGTAGCATGTAATGATACATAGATTCATATTTTCGAACCCAAATACTTTGGGGCGGAGGCTTAGTTAACTGCTGGAATTTTTACGTACTTACTGTTCTGATTTGTACTTATAAATGAAAAAGATGGAGAAGATTTATTTTTCATGTATTTCATCTCTTAGTTCTTATTGTGGTTCAACGTATGCATTTTGCTTTTGCAGGGAACCATGATTAAGTTGTTTAAAGTGAAGGAGAAACAGAGAGAGCTTGCTGAAAATGCAAATGGAAAGCCACCAATTAAGAAACAAAGTGCAGGAGAGCTGCGTCTTCATAAAGGTATTTCCTTTTCAATTTCTTTGTAAAATCTTTTTTAATCAAATTAGTACTTTAAGCATTTCGTTTCATGCAAGGTAATTTGTTATATCTTTTAGCATGCCAAATTGGTCAATTTAGGTTTGATTAGCTAGGGTTTCATTTCAGTTGTTTGTTTACCTTCCTTAGAGATCTTCCATGTAAAGTTTCAGATGAAATAGTGCACTCTGATTATAATTTGAGACATGAGAAGTTGTGGTTGTCATGAACCAGTTTTCTCCTCTTTGGTATCATGGGAGCATGTGGAGTGTGTAGTAAATGTAGAAATGGCAAGAGAGAATGCAGTGCTTCCTGATAAAAAAAAAGTAATTGTTTTTAGAAAATGTAGTACTTTACTTGGAGGGGGTGGGTGTTGTTGATCTCAGGTATTTCACAAACAGTCTGTCCACCTGCTACAACTACAAGTTTACAGGCCCATGCTGTGTATTGCTAGAATCCAACGTGTGTGTTGAAGTGGATCCCTCGTGAAGTGGTTTTTTGTACAGTGAAGGTAAGAAGTGGAGGTTGGACTGTTGGAGGAGGGTAAGTGTAAATGGAGGCCAGAAGGCAGTGAAACTTTGAGTGCCCCCCAAATTCATATTACATCATTCACGGGTTTCCTCAAATCTCCCATGTATGCTGTAGAGATTTGACGTATACATTGTCATTTCTTTGTTGACTCCTTTTACTCGTATATAGGCGAAAATTTGTGTTATGTTTGACCATCCACTGTTGAAGATTGATGTTGCTTGAACCTCTATATGTGACAGCTAACTGCATATGACTCTCACATATATTGAAAGTTAAAAGTGAAGATTATTGTTGCTTGATGCAAAGCACTTTCTAGTGAAGGGGTTCTCTTCGTCTTTCTTTTGATTGATGAACTTTCTGATGGAAGTTCATGAATAATTGTGTCAGTTCCTTCCTTCATTGACTCATTCTCCGATTCATTATAGAATGTTTCCTCTTATAATAAAGAATCTATACAAAAGGGATTCATTTATATTTCTTTGTTCCAGGTGGTTCTTTTCTCCGACTATTTATTTGTCTTCTATTTTTTTCCACACCAATGAAGATGGCCTTAACGTTTTTTTAATTTCCCTGTAGATATCAGTGAACTAAATCTACCTGAAACGTGTAGCATATCATTCCCTAACGGAAAAGATGACCTCATGAACTTTGAAGTCACCATTCGGCCTGATGAAGGATATTATGTGTAAGTAGTTCTGCTGAAATTATTCTCTCTTTAATGAAGTATATTCCTGAAAAAAGTTTACTTCGACTTGGATATACCTTTCTGCTTTCGTATTTTTATGGAAAATTGGTGCACTTCAAGTTAGCTTTCCTCGGTGCTGATAACGTACATTGTATTATTTGTTCGTATTCAGGGGTGGAACTTTTGTCTTCTCTTTCAGCATTTCTTCTATTTATCCTCATGAGGCTCCAAAGGTCAAGTGCAAGACAAAGGTGGGTAATGGTTTATAGCTTTTTTTCTTTCGATTCTCTTTTAATTTCTTGAAGAATGAATTTAGATTCCAATTGTTTTATCCATAGCTCTGGAAACTCGGATTTTGCAGGTTTACCACCCGAATATTGACTTGGAAGGTAATGTGTGTCTCAACATTCTTCGAGAAGACTGGAAACCTGTGCTCAACATCAACACAATAATCTATGGCTTGTATCATTTGTTCACGGTACTTTAACTTCCTTCTAGTTTGATGTACTTTATGCTACTCTTAAGTAGTTGTTAGTTTATAACTTCCGCTTCTGCAGGAACCCAATCACGAGGATCCCCTCAATCATGAAGCAGCTGCTGTGTTGAGTGACAACCCCAGCTTGTTCGAGTCCAATGTCAGAAGGGCAATGTCTGGAGGATATGTAGGAGAAACGTTCTTCC-AACGCTGCATATAAACGTCTCAGATGCAGAATCGATTAGTTGATGAT</genome_strand>
        <mrna_strand>AGAC-CCGTCATTCTTCTTCAATC-T-TTTTTGCAGATTCTCATTTCAGCAGCAGCAGCAGCAGGTTCACATAATTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG-ACCATGATTAAGCTATTTAAAGTAAAGGAGAAACAGAGAGAGCTTGCTGAAAATGCTAATGGAAAGCCTCCAATTAAGAAACAAAGTGCAGGAGAGCTGCGTCTTCATAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAGTGAACTAAATCTACCTAAAACGTGTAGCATATCATTCCCTAACGGAAAAGATGACCTCATGAACTTTGAAGTCACCATTCGGCCTGATGACGGATATTATAT............................................................................................................................................................................GGGTGGAACTTTTGTCTTCTCTTTCAGCATTTCTTCTATTTATCCTCATGAGGCTCCAAAAGTCAAGTGCAAGACGAAG..............................................................................................................GTTTACCACCCGAATATTGACTTGGAAGGAAATGTATGTCTCAACATTCTTCGAGAAGACTGGAAACCTGTGCTCAACATCAACACAGTAATCTATGGCTTGTATCATCTGTTCACG...............................................................................GAACCCAATCACGAGGATCCCCTCAATCATGAAGCAGCTGCTGTGTTGAGTGACAACCCGAGCATGTTCGAGTCTAATGTCAGAAGGGCAATGTCTGGAGGATATGTAGGGCAAACGTACTTCCAAACGCTGCATGT-AATGTCTCAAATGCAGAATCAATTAGTTGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E567127" ref_strand="+" ref_description="SGN-E567127 [11204]">
      <seq>ctcttctatactatttttctctccatgtataaatagagagacccgtcattcttcttcaatcttttttgcagattctcatttcagcagcagcagcagcaggttcacataattttgggaccatgattaagctatttaaagtaaaggagaaacagagagagcttgctgaaaatgctaatggaaagcctccaattaagaaacaaagtgcaggagagctgcgtcttcataaagatatcagtgaactaaatctacctaaaacgtgtagcatatcattccctaacggaaaagatgacctcatgaactttgaagtcaccattcggcctgatgacggatattatatgggtggaacttttgtcttctctttcagcatttcttctatttatcctcatgaggctccaaaagtcaagtgcaagacgaaggtttaccacccgaatattgacttggaaggaaatgtatgtctcaacattcttcgagaagactggaaacctgtgctcaacatcaacacagtaatctatgggttgtatcatctgttcacgggaaccaaatcacgaggatcccctcaatcatgaagcagctgtgtgttgagtgacaaacccgagcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="21684" stop="26800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22016" g_stop="22094" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="114" r_length="76" r_score="0.899"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22095" i_stop="24531" i_length="2437">
            <donor d_prob="0.941" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24532" g_stop="24646" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="228" r_length="114" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24647" i_stop="25768" i_length="1122">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.914" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25769" g_stop="25877" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="337" r_length="109" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25878" i_stop="26049" i_length="172">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26050" g_stop="26128" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="416" r_length="79" r_score="0.975"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26129" i_stop="26238" i_length="110">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.977" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26239" g_stop="26355" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="533" r_length="117" r_score="0.957"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26356" i_stop="26434" i_length="79">
            <donor d_prob="0.976" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26435" g_stop="26500" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="600" r_length="67" r_score="0.879"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E567127" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E567127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22016" e_stop="22094"/>
          <exon e_start="24532" e_stop="24646"/>
          <exon e_start="25769" e_stop="25877"/>
          <exon e_start="26050" e_stop="26128"/>
          <exon e_start="26239" e_stop="26355"/>
          <exon e_start="26435" e_stop="26500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTCCATCACTATTCTTCAATCTTCTTTTTGCAGATTCTCATTTCAGCAGCAGCAGGAGGAGGTTCACATAATTTTGGTATTTTCTTGAGCTATTTGCTATTACTTTTATCAGATTCAGCGATAAAAAGGGTTCTTTTACGTGTTTTTCTTTTTTGTTTTCAAGTTTTGTTCTTACCCAGATCGTGAAATCGACTGAATTATCGATGGTTGCTCTTTAATTTAAACCCCTTTTGATAAATTTGTTGATTTTGAAGAATTTTGTCCAGAAATTATGCTTCTTGGCGGCGTGTTTGATCTTAGTTGATATCAGTCTGTCTTGTTTGCTTTTAGTTGGGATTGACTGAATTTGTTGTTGTTGTTGCTGCTGCTGCTGCTGTTAACGTTTTAAGTTTGGGTAGTGGAAAGTGCTAGTATAGAGAACCTCTTAAAAAAAAGATGATTTTTTTTAGCATTATTAGATGTTGGTTGCTTGTTGATATGTTGTTCGGATTTTTCAAAAATGGCGCCTCGAATTCTCAAAAACAGCGCATTTTTGCTGGATTGTGATATGGGTGTGGCGTTGATTGCTCTAGTTTTGTTAAAGCTCAAGCCTTTCTTGTGTCTTCCCGAAATGATGGCACACCTGTGGGAAGCTACAATTGTGACATTATTTTTGGAGAGCCTGAGCACTATAGCCAGTTTGTGATCTTAACTTTTGAGCCTGAATAAGTGTTTGAAGCTACAATTGTTGCTTCCTAGTTTAATTGCTCTAGTTTTGTTAAAGCTCATGTATTTTCTTGTGTCTTTCCAAAATAATGGCACCTTCGTGGGAAGCTACAATTTCGGCATTATTTTTGGAGAGCCCGAGCAACATAGCCATTTGTGATCTTATTTTTGAGCCTGAATTAGTGTTTGAAGCTACAATTGTTGTTCCTAGTTTAATTGCTCTAGCCTCTGTTAAAGCTCAAGTATTTTCTTGTGTCTTTAACAGAAAAGGTGTAGCTTGATTGATGCTGAATTTTACTTTTGATTAGCAGAATTGTCCCAAGCTAGAGTTTGGTGCTGGGTCGTTCTATGCATGTCTGTTAAGATCTTTGTGTTTAGTTCTGGCCGAGAATAGATTCAGTGATAGTACCCGCAGTTGGAAAAATTAGTGGTATCCCAGAAGGTAATATTCATTATTGATCTACTCTTAATGTCCATAACCAGAAGTGAATTTATAACCTAAAACTGGGGCACATGAACTCGTGCTCTTTCCGTAGAACTAGGTATTTTATCTATACATTTTCTAAGGTCACGAGAAGGCTAAATGGTGCACTTGGTTGACTGTTGAGTTATTTATCTAGTGGACTGGGGATCAATCCTACTTGATGCAAATTTTCGTTCTTCCTTTTAGCAGTGCACCATGTTCTAGAAATCCTAGATTCGCCTCTGTCCATAACATACAACTTGAATTGTTTTATGTTAATTGATTTTTGGCCAGTGAATGGATATTATGAGATGATAATATCTCTAGTTAATCCTCTTTCATATTCCATCTATCAAAGTCCTTGAATAGCCTTCAATTGACTTGAATGACATTTACAATATTCAAATGGTTACACTTTCCAAAACTGAGCCATTGCCCATTATATTTTGTTGTCAGATGTTAGCATCTTTTCCCTTCTTTACTCCTATATATTCTCTATGTGTTTCCACTTTGTTAAGTGTGAAAAATCAAGAATCAATACTAAGAAACAAAGTCTCTTCTTCTCCATTTCTTGAGTGCTGGGTTTTCTTCTAAATAAATCTTTATAGTTTCTGTGTTTCTAGTTCTATACTAGAAGAGCTTATTGAATCATAGGGGACAGTGTCTTTGACATGCCTCAAGCTTTCAAGAGTTCTCGACAGGTTTCGTGATCAAGTATTTTCCATAAGAATCCAACACCAATTTCAAAGCTTAACTGGTAGTGAAAAAGAAATACAAAAAGTTAAAGTTCTATTTTTCTGCTTTAAAGCTCAGAAGAGTTATTGGAACATTACGCAGAAACATTGGCTATTTTAAAAGAAATGATTTTTATATTCTTTATTCATATTAGCACAGGAGGTTAGTTGATTCAGATGACTTACAAGCTCTAGATTGCAGATTTTGCAAGCGCATCCAAATATGTTAGAAGTAAAAGATCCATCCAAGTGATACCAACTAGCTGAGAATAATATATTAGTGTGTGTGAGGAATCCTTTTCATCTTGATTAGAGACTTGTATATCTCTATAAGAATAAATGTGAGATTTGAAGAACCTTTAGTTCAAGAGAACTTCTAATTTGCTTTATTATTCAATATTAAATGAACTTGAGTAGCATGTAATGATACATAGATTCATATTTTCGAACCCAAATACTTTGGGGCGGAGGCTTAGTTAACTGCTGGAATTTTTACGTACTTACTGTTCTGATTTGTACTTATAAATGAAAAAGATGGAGAAGATTTATTTTTCATGTATTTCATCTCTTAGTTCTTATTGTGGTTCAACGTATGCATTTTGCTTTTGCAGGGAACCATGATTAAGTTGTTTAAAGTGAAGGAGAAACAGAGAGAGCTTGCTGAAAATGCAAATGGAAAGCCACCAATTAAGAAACAAAGTGCAGGAGAGCTGCGTCTTCATAAAGGTATTTCCTTTTCAATTTCTTTGTAAAATCTTTTTTAATCAAATTAGTACTTTAAGCATTTCGTTTCATGCAAGGTAATTTGTTATATCTTTTAGCATGCCAAATTGGTCAATTTAGGTTTGATTAGCTAGGGTTTCATTTCAGTTGTTTGTTTACCTTCCTTAGAGATCTTCCATGTAAAGTTTCAGATGAAATAGTGCACTCTGATTATAATTTGAGACATGAGAAGTTGTGGTTGTCATGAACCAGTTTTCTCCTCTTTGGTATCATGGGAGCATGTGGAGTGTGTAGTAAATGTAGAAATGGCAAGAGAGAATGCAGTGCTTCCTGATAAAAAAAAAGTAATTGTTTTTAGAAAATGTAGTACTTTACTTGGAGGGGGTGGGTGTTGTTGATCTCAGGTATTTCACAAACAGTCTGTCCACCTGCTACAACTACAAGTTTACAGGCCCATGCTGTGTATTGCTAGAATCCAACGTGTGTGTTGAAGTGGATCCCTCGTGAAGTGGTTTTTTGTACAGTGAAGGTAAGAAGTGGAGGTTGGACTGTTGGAGGAGGGTAAGTGTAAATGGAGGCCAGAAGGCAGTGAAACTTTGAGTGCCCCCCAAATTCATATTACATCATTCACGGGTTTCCTCAAATCTCCCATGTATGCTGTAGAGATTTGACGTATACATTGTCATTTCTTTGTTGACTCCTTTTACTCGTATATAGGCGAAAATTTGTGTTATGTTTGACCATCCACTGTTGAAGATTGATGTTGCTTGAACCTCTATATGTGACAGCTAACTGCATATGACTCTCACATATATTGAAAGTTAAAAGTGAAGATTATTGTTGCTTGATGCAAAGCACTTTCTAGTGAAGGGGTTCTCTTCGTCTTTCTTTTGATTGATGAACTTTCTGATGGAAGTTCATGAATAATTGTGTCAGTTCCTTCCTTCATTGACTCATTCTCCGATTCATTATAGAATGTTTCCTCTTATAATAAAGAATCTATACAAAAGGGATTCATTTATATTTCTTTGTTCCAGGTGGTTCTTTTCTCCGACTATTTATTTGTCTTCTATTTTTTTCCACACCAATGAAGATGGCCTTAACGTTTTTTTAATTTCCCTGTAGATATCAGTGAACTAAATCTACCTGAAACGTGTAGCATATCATTCCCTAACGGAAAAGATGACCTCATGAACTTTGAAGTCACCATTCGGCCTGATGAAGGATATTATGTGTAAGTAGTTCTGCTGAAATTATTCTCTCTTTAATGAAGTATATTCCTGAAAAAAGTTTACTTCGACTTGGATATACCTTTCTGCTTTCGTATTTTTATGGAAAATTGGTGCACTTCAAGTTAGCTTTCCTCGGTGCTGATAACGTACATTGTATTATTTGTTCGTATTCAGGGGTGGAACTTTTGTCTTCTCTTTCAGCATTTCTTCTATTTATCCTCATGAGGCTCCAAAGGTCAAGTGCAAGACAAAGGTGGGTAATGGTTTATAGCTTTTTTTCTTTCGATTCTCTTTTAATTTCTTGAAGAATGAATTTAGATTCCAATTGTTTTATCCATAGCTCTGGAAACTCGGATTTTGCAGGTTTACCACCCGAATATTGACTTGGAAGGTAATGTGTGTCTCAACATTCTTCGAGAAGACTGGAAACCTGTGCTCAACATCAACACAATAATCTATGGCTTGTATCATTTGTTCACGGTACTTTAACTTCCTTCTAGTTTGATGTACTTTATGCTACTCTTAAGTAGTTGTTAGTTTATAACTTCCGCTTCTGCAG-GAACCCAATCACGAGGATCCCCTCAATCATGAAGCAGCTGCTGTGTTGAGTGAC-AACCCCAGCTTG</genome_strand>
        <mrna_strand>AGAC-CCGTCATTCTTCTTCAATC-T-TTTTTGCAGATTCTCATTTCAGCAGCAGCAGCAGCAGGTTCACATAATTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG-ACCATGATTAAGCTATTTAAAGTAAAGGAGAAACAGAGAGAGCTTGCTGAAAATGCTAATGGAAAGCCTCCAATTAAGAAACAAAGTGCAGGAGAGCTGCGTCTTCATAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAGTGAACTAAATCTACCTAAAACGTGTAGCATATCATTCCCTAACGGAAAAGATGACCTCATGAACTTTGAAGTCACCATTCGGCCTGATGACGGATATTATAT............................................................................................................................................................................GGGTGGAACTTTTGTCTTCTCTTTCAGCATTTCTTCTATTTATCCTCATGAGGCTCCAAAAGTCAAGTGCAAGACGAAG..............................................................................................................GTTTACCACCCGAATATTGACTTGGAAGGAAATGTATGTCTCAACATTCTTCGAGAAGACTGGAAACCTGTGCTCAACATCAACACAGTAATCTATGGGTTGTATCATCTGTTCACG...............................................................................GGAACCAAATCACGAGGATCCCCTCAATCATGAAGCAGCTG-TGTGTTGAGTGACAAACCCGAGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450872" ref_strand="+" ref_description="SGN-E450872 [cSTS-10-P9]">
      <seq>ctcagattctcttctaactatttttctctccatgtataaatagagagacccatcattcttcttcaatcttttttgcagattctcatttcagcagcagcagcagcaggttcacataatttggcaccatgattaagttatttaaagtaaaggagaaacagagagagcttgctgaaaatgcaaatggaaagccaccaattaagaaacaaagtgcaggagagctgcgtcttcataaagatatcagtgaactaaatctacctaaaacgtgtagcatatcattccctaatggaaaagatgacctcatgaactttgaagtcaccattcggcctgatgacggatattatatgggtggaacttttgtcttctctttcagcatttcttctatttatcctcatgaggctccaaaagtcaagtgcaagacgaaggtttaccacccgaatattgacttggaaggaaatgtgtgtctcaacattcttcgagaagactggaaacctgtgctcaacatcaacacaataatctatggcttgtatcatctgttcacggaacccaatcacgaagatcccctcaatcatgaagcagctgctgtgttgagtgacaacccgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="21691" stop="26796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22016" g_stop="22094" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="119" r_length="74" r_score="0.886"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22095" i_stop="24531" i_length="2437">
            <donor d_prob="0.941" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24532" g_stop="24646" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="234" r_length="115" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24647" i_stop="25768" i_length="1122">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25769" g_stop="25877" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="343" r_length="109" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25878" i_stop="26049" i_length="172">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26050" g_stop="26128" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="422" r_length="79" r_score="0.975"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26129" i_stop="26238" i_length="110">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26239" g_stop="26355" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="539" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26356" i_stop="26434" i_length="79">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26435" g_stop="26496" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="601" r_length="62" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E450872" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E450872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22016" e_stop="22094"/>
          <exon e_start="24532" e_stop="24646"/>
          <exon e_start="25769" e_stop="25877"/>
          <exon e_start="26050" e_stop="26128"/>
          <exon e_start="26239" e_stop="26355"/>
          <exon e_start="26435" e_stop="26496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTCCATCACTATTCTTCAATCTTCTTTTTGCAGATTCTCATTTCAGCAGCAGCAGGAGGAGGTTCACATAATTTTGGTATTTTCTTGAGCTATTTGCTATTACTTTTATCAGATTCAGCGATAAAAAGGGTTCTTTTACGTGTTTTTCTTTTTTGTTTTCAAGTTTTGTTCTTACCCAGATCGTGAAATCGACTGAATTATCGATGGTTGCTCTTTAATTTAAACCCCTTTTGATAAATTTGTTGATTTTGAAGAATTTTGTCCAGAAATTATGCTTCTTGGCGGCGTGTTTGATCTTAGTTGATATCAGTCTGTCTTGTTTGCTTTTAGTTGGGATTGACTGAATTTGTTGTTGTTGTTGCTGCTGCTGCTGCTGTTAACGTTTTAAGTTTGGGTAGTGGAAAGTGCTAGTATAGAGAACCTCTTAAAAAAAAGATGATTTTTTTTAGCATTATTAGATGTTGGTTGCTTGTTGATATGTTGTTCGGATTTTTCAAAAATGGCGCCTCGAATTCTCAAAAACAGCGCATTTTTGCTGGATTGTGATATGGGTGTGGCGTTGATTGCTCTAGTTTTGTTAAAGCTCAAGCCTTTCTTGTGTCTTCCCGAAATGATGGCACACCTGTGGGAAGCTACAATTGTGACATTATTTTTGGAGAGCCTGAGCACTATAGCCAGTTTGTGATCTTAACTTTTGAGCCTGAATAAGTGTTTGAAGCTACAATTGTTGCTTCCTAGTTTAATTGCTCTAGTTTTGTTAAAGCTCATGTATTTTCTTGTGTCTTTCCAAAATAATGGCACCTTCGTGGGAAGCTACAATTTCGGCATTATTTTTGGAGAGCCCGAGCAACATAGCCATTTGTGATCTTATTTTTGAGCCTGAATTAGTGTTTGAAGCTACAATTGTTGTTCCTAGTTTAATTGCTCTAGCCTCTGTTAAAGCTCAAGTATTTTCTTGTGTCTTTAACAGAAAAGGTGTAGCTTGATTGATGCTGAATTTTACTTTTGATTAGCAGAATTGTCCCAAGCTAGAGTTTGGTGCTGGGTCGTTCTATGCATGTCTGTTAAGATCTTTGTGTTTAGTTCTGGCCGAGAATAGATTCAGTGATAGTACCCGCAGTTGGAAAAATTAGTGGTATCCCAGAAGGTAATATTCATTATTGATCTACTCTTAATGTCCATAACCAGAAGTGAATTTATAACCTAAAACTGGGGCACATGAACTCGTGCTCTTTCCGTAGAACTAGGTATTTTATCTATACATTTTCTAAGGTCACGAGAAGGCTAAATGGTGCACTTGGTTGACTGTTGAGTTATTTATCTAGTGGACTGGGGATCAATCCTACTTGATGCAAATTTTCGTTCTTCCTTTTAGCAGTGCACCATGTTCTAGAAATCCTAGATTCGCCTCTGTCCATAACATACAACTTGAATTGTTTTATGTTAATTGATTTTTGGCCAGTGAATGGATATTATGAGATGATAATATCTCTAGTTAATCCTCTTTCATATTCCATCTATCAAAGTCCTTGAATAGCCTTCAATTGACTTGAATGACATTTACAATATTCAAATGGTTACACTTTCCAAAACTGAGCCATTGCCCATTATATTTTGTTGTCAGATGTTAGCATCTTTTCCCTTCTTTACTCCTATATATTCTCTATGTGTTTCCACTTTGTTAAGTGTGAAAAATCAAGAATCAATACTAAGAAACAAAGTCTCTTCTTCTCCATTTCTTGAGTGCTGGGTTTTCTTCTAAATAAATCTTTATAGTTTCTGTGTTTCTAGTTCTATACTAGAAGAGCTTATTGAATCATAGGGGACAGTGTCTTTGACATGCCTCAAGCTTTCAAGAGTTCTCGACAGGTTTCGTGATCAAGTATTTTCCATAAGAATCCAACACCAATTTCAAAGCTTAACTGGTAGTGAAAAAGAAATACAAAAAGTTAAAGTTCTATTTTTCTGCTTTAAAGCTCAGAAGAGTTATTGGAACATTACGCAGAAACATTGGCTATTTTAAAAGAAATGATTTTTATATTCTTTATTCATATTAGCACAGGAGGTTAGTTGATTCAGATGACTTACAAGCTCTAGATTGCAGATTTTGCAAGCGCATCCAAATATGTTAGAAGTAAAAGATCCATCCAAGTGATACCAACTAGCTGAGAATAATATATTAGTGTGTGTGAGGAATCCTTTTCATCTTGATTAGAGACTTGTATATCTCTATAAGAATAAATGTGAGATTTGAAGAACCTTTAGTTCAAGAGAACTTCTAATTTGCTTTATTATTCAATATTAAATGAACTTGAGTAGCATGTAATGATACATAGATTCATATTTTCGAACCCAAATACTTTGGGGCGGAGGCTTAGTTAACTGCTGGAATTTTTACGTACTTACTGTTCTGATTTGTACTTATAAATGAAAAAGATGGAGAAGATTTATTTTTCATGTATTTCATCTCTTAGTTCTTATTGTGGTTCAACGTATGCATTTTGCTTTTGCAGGGAACCATGATTAAGTTGTTTAAAGTGAAGGAGAAACAGAGAGAGCTTGCTGAAAATGCAAATGGAAAGCCACCAATTAAGAAACAAAGTGCAGGAGAGCTGCGTCTTCATAAAGGTATTTCCTTTTCAATTTCTTTGTAAAATCTTTTTTAATCAAATTAGTACTTTAAGCATTTCGTTTCATGCAAGGTAATTTGTTATATCTTTTAGCATGCCAAATTGGTCAATTTAGGTTTGATTAGCTAGGGTTTCATTTCAGTTGTTTGTTTACCTTCCTTAGAGATCTTCCATGTAAAGTTTCAGATGAAATAGTGCACTCTGATTATAATTTGAGACATGAGAAGTTGTGGTTGTCATGAACCAGTTTTCTCCTCTTTGGTATCATGGGAGCATGTGGAGTGTGTAGTAAATGTAGAAATGGCAAGAGAGAATGCAGTGCTTCCTGATAAAAAAAAAGTAATTGTTTTTAGAAAATGTAGTACTTTACTTGGAGGGGGTGGGTGTTGTTGATCTCAGGTATTTCACAAACAGTCTGTCCACCTGCTACAACTACAAGTTTACAGGCCCATGCTGTGTATTGCTAGAATCCAACGTGTGTGTTGAAGTGGATCCCTCGTGAAGTGGTTTTTTGTACAGTGAAGGTAAGAAGTGGAGGTTGGACTGTTGGAGGAGGGTAAGTGTAAATGGAGGCCAGAAGGCAGTGAAACTTTGAGTGCCCCCCAAATTCATATTACATCATTCACGGGTTTCCTCAAATCTCCCATGTATGCTGTAGAGATTTGACGTATACATTGTCATTTCTTTGTTGACTCCTTTTACTCGTATATAGGCGAAAATTTGTGTTATGTTTGACCATCCACTGTTGAAGATTGATGTTGCTTGAACCTCTATATGTGACAGCTAACTGCATATGACTCTCACATATATTGAAAGTTAAAAGTGAAGATTATTGTTGCTTGATGCAAAGCACTTTCTAGTGAAGGGGTTCTCTTCGTCTTTCTTTTGATTGATGAACTTTCTGATGGAAGTTCATGAATAATTGTGTCAGTTCCTTCCTTCATTGACTCATTCTCCGATTCATTATAGAATGTTTCCTCTTATAATAAAGAATCTATACAAAAGGGATTCATTTATATTTCTTTGTTCCAGGTGGTTCTTTTCTCCGACTATTTATTTGTCTTCTATTTTTTTCCACACCAATGAAGATGGCCTTAACGTTTTTTTAATTTCCCTGTAGATATCAGTGAACTAAATCTACCTGAAACGTGTAGCATATCATTCCCTAACGGAAAAGATGACCTCATGAACTTTGAAGTCACCATTCGGCCTGATGAAGGATATTATGTGTAAGTAGTTCTGCTGAAATTATTCTCTCTTTAATGAAGTATATTCCTGAAAAAAGTTTACTTCGACTTGGATATACCTTTCTGCTTTCGTATTTTTATGGAAAATTGGTGCACTTCAAGTTAGCTTTCCTCGGTGCTGATAACGTACATTGTATTATTTGTTCGTATTCAGGGGTGGAACTTTTGTCTTCTCTTTCAGCATTTCTTCTATTTATCCTCATGAGGCTCCAAAGGTCAAGTGCAAGACAAAGGTGGGTAATGGTTTATAGCTTTTTTTCTTTCGATTCTCTTTTAATTTCTTGAAGAATGAATTTAGATTCCAATTGTTTTATCCATAGCTCTGGAAACTCGGATTTTGCAGGTTTACCACCCGAATATTGACTTGGAAGGTAATGTGTGTCTCAACATTCTTCGAGAAGACTGGAAACCTGTGCTCAACATCAACACAATAATCTATGGCTTGTATCATTTGTTCACGGTACTTTAACTTCCTTCTAGTTTGATGTACTTTATGCTACTCTTAAGTAGTTGTTAGTTTATAACTTCCGCTTCTGCAGGAACCCAATCACGAGGATCCCCTCAATCATGAAGCAGCTGCTGTGTTGAGTGACAACCCCAG</genome_strand>
        <mrna_strand>AGAC-CCATCATTCTTCTTCAATC-T-TTTTTGCAGATTCTCATTTCAGCAGCAGCAGCAGCAGGTTCACATAA-TTT-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACCATGATTAAGTTATTTAAAGTAAAGGAGAAACAGAGAGAGCTTGCTGAAAATGCAAATGGAAAGCCACCAATTAAGAAACAAAGTGCAGGAGAGCTGCGTCTTCATAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAGTGAACTAAATCTACCTAAAACGTGTAGCATATCATTCCCTAATGGAAAAGATGACCTCATGAACTTTGAAGTCACCATTCGGCCTGATGACGGATATTATAT............................................................................................................................................................................GGGTGGAACTTTTGTCTTCTCTTTCAGCATTTCTTCTATTTATCCTCATGAGGCTCCAAAAGTCAAGTGCAAGACGAAG..............................................................................................................GTTTACCACCCGAATATTGACTTGGAAGGAAATGTGTGTCTCAACATTCTTCGAGAAGACTGGAAACCTGTGCTCAACATCAACACAATAATCTATGGCTTGTATCATCTGTTCACG...............................................................................GAACCCAATCACGAAGATCCCCTCAATCATGAAGCAGCTGCTGTGTTGAGTGACAACCCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458664" ref_strand="+" ref_description="SGN-E458664 [cPRO-6-O24]">
      <seq>cttctatactattgttctctccatgtataaatagagagacccatcattcttcttcaatcttttttgcagattctcatttcagcagcagcagcagcaggttcacataattttgggaccatgattaagctatttaaagtaaaggagaaacagagagagcttgctgaaaatgctaatggaaagcctccaattaagaaacaaagtgcaggagagctgcgtcttcataaagatatcagtgaactaaatctacctaaaacgtgtagcatatcattccctaacggaaaagatgacctcatgaactttgaagtcaccattcggcctgatgacggatattatatgggtggaacttttgtcttctctttcaacatttcttctatttatcctcatgaagctccaaaagtctagtgcaagacgaacgtttaccacccgaatattgacttggaaggaaatgtatgtctcaacattcttctagaagactggaaacctgtgctcaacatccacacgataatctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="21684" stop="26635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22016" g_stop="22094" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="112" r_length="76" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22095" i_stop="24531" i_length="2437">
            <donor d_prob="0.941" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24532" g_stop="24646" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="226" r_length="114" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24647" i_stop="25768" i_length="1122">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.914" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25769" g_stop="25877" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="335" r_length="109" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25878" i_stop="26049" i_length="172">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.905" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26050" g_stop="26128" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="414" r_length="79" r_score="0.924"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26129" i_stop="26238" i_length="110">
            <donor d_prob="0.995" d_score="0.90"/>
            <acceptor a_prob="0.977" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26239" g_stop="26335" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="511" r_length="97" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E458664" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E458664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22016" e_stop="22094"/>
          <exon e_start="24532" e_stop="24646"/>
          <exon e_start="25769" e_stop="25877"/>
          <exon e_start="26050" e_stop="26128"/>
          <exon e_start="26239" e_stop="26335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTCCATCACTATTCTTCAATCTTCTTTTTGCAGATTCTCATTTCAGCAGCAGCAGGAGGAGGTTCACATAATTTTGGTATTTTCTTGAGCTATTTGCTATTACTTTTATCAGATTCAGCGATAAAAAGGGTTCTTTTACGTGTTTTTCTTTTTTGTTTTCAAGTTTTGTTCTTACCCAGATCGTGAAATCGACTGAATTATCGATGGTTGCTCTTTAATTTAAACCCCTTTTGATAAATTTGTTGATTTTGAAGAATTTTGTCCAGAAATTATGCTTCTTGGCGGCGTGTTTGATCTTAGTTGATATCAGTCTGTCTTGTTTGCTTTTAGTTGGGATTGACTGAATTTGTTGTTGTTGTTGCTGCTGCTGCTGCTGTTAACGTTTTAAGTTTGGGTAGTGGAAAGTGCTAGTATAGAGAACCTCTTAAAAAAAAGATGATTTTTTTTAGCATTATTAGATGTTGGTTGCTTGTTGATATGTTGTTCGGATTTTTCAAAAATGGCGCCTCGAATTCTCAAAAACAGCGCATTTTTGCTGGATTGTGATATGGGTGTGGCGTTGATTGCTCTAGTTTTGTTAAAGCTCAAGCCTTTCTTGTGTCTTCCCGAAATGATGGCACACCTGTGGGAAGCTACAATTGTGACATTATTTTTGGAGAGCCTGAGCACTATAGCCAGTTTGTGATCTTAACTTTTGAGCCTGAATAAGTGTTTGAAGCTACAATTGTTGCTTCCTAGTTTAATTGCTCTAGTTTTGTTAAAGCTCATGTATTTTCTTGTGTCTTTCCAAAATAATGGCACCTTCGTGGGAAGCTACAATTTCGGCATTATTTTTGGAGAGCCCGAGCAACATAGCCATTTGTGATCTTATTTTTGAGCCTGAATTAGTGTTTGAAGCTACAATTGTTGTTCCTAGTTTAATTGCTCTAGCCTCTGTTAAAGCTCAAGTATTTTCTTGTGTCTTTAACAGAAAAGGTGTAGCTTGATTGATGCTGAATTTTACTTTTGATTAGCAGAATTGTCCCAAGCTAGAGTTTGGTGCTGGGTCGTTCTATGCATGTCTGTTAAGATCTTTGTGTTTAGTTCTGGCCGAGAATAGATTCAGTGATAGTACCCGCAGTTGGAAAAATTAGTGGTATCCCAGAAGGTAATATTCATTATTGATCTACTCTTAATGTCCATAACCAGAAGTGAATTTATAACCTAAAACTGGGGCACATGAACTCGTGCTCTTTCCGTAGAACTAGGTATTTTATCTATACATTTTCTAAGGTCACGAGAAGGCTAAATGGTGCACTTGGTTGACTGTTGAGTTATTTATCTAGTGGACTGGGGATCAATCCTACTTGATGCAAATTTTCGTTCTTCCTTTTAGCAGTGCACCATGTTCTAGAAATCCTAGATTCGCCTCTGTCCATAACATACAACTTGAATTGTTTTATGTTAATTGATTTTTGGCCAGTGAATGGATATTATGAGATGATAATATCTCTAGTTAATCCTCTTTCATATTCCATCTATCAAAGTCCTTGAATAGCCTTCAATTGACTTGAATGACATTTACAATATTCAAATGGTTACACTTTCCAAAACTGAGCCATTGCCCATTATATTTTGTTGTCAGATGTTAGCATCTTTTCCCTTCTTTACTCCTATATATTCTCTATGTGTTTCCACTTTGTTAAGTGTGAAAAATCAAGAATCAATACTAAGAAACAAAGTCTCTTCTTCTCCATTTCTTGAGTGCTGGGTTTTCTTCTAAATAAATCTTTATAGTTTCTGTGTTTCTAGTTCTATACTAGAAGAGCTTATTGAATCATAGGGGACAGTGTCTTTGACATGCCTCAAGCTTTCAAGAGTTCTCGACAGGTTTCGTGATCAAGTATTTTCCATAAGAATCCAACACCAATTTCAAAGCTTAACTGGTAGTGAAAAAGAAATACAAAAAGTTAAAGTTCTATTTTTCTGCTTTAAAGCTCAGAAGAGTTATTGGAACATTACGCAGAAACATTGGCTATTTTAAAAGAAATGATTTTTATATTCTTTATTCATATTAGCACAGGAGGTTAGTTGATTCAGATGACTTACAAGCTCTAGATTGCAGATTTTGCAAGCGCATCCAAATATGTTAGAAGTAAAAGATCCATCCAAGTGATACCAACTAGCTGAGAATAATATATTAGTGTGTGTGAGGAATCCTTTTCATCTTGATTAGAGACTTGTATATCTCTATAAGAATAAATGTGAGATTTGAAGAACCTTTAGTTCAAGAGAACTTCTAATTTGCTTTATTATTCAATATTAAATGAACTTGAGTAGCATGTAATGATACATAGATTCATATTTTCGAACCCAAATACTTTGGGGCGGAGGCTTAGTTAACTGCTGGAATTTTTACGTACTTACTGTTCTGATTTGTACTTATAAATGAAAAAGATGGAGAAGATTTATTTTTCATGTATTTCATCTCTTAGTTCTTATTGTGGTTCAACGTATGCATTTTGCTTTTGCAGGGAACCATGATTAAGTTGTTTAAAGTGAAGGAGAAACAGAGAGAGCTTGCTGAAAATGCAAATGGAAAGCCACCAATTAAGAAACAAAGTGCAGGAGAGCTGCGTCTTCATAAAGGTATTTCCTTTTCAATTTCTTTGTAAAATCTTTTTTAATCAAATTAGTACTTTAAGCATTTCGTTTCATGCAAGGTAATTTGTTATATCTTTTAGCATGCCAAATTGGTCAATTTAGGTTTGATTAGCTAGGGTTTCATTTCAGTTGTTTGTTTACCTTCCTTAGAGATCTTCCATGTAAAGTTTCAGATGAAATAGTGCACTCTGATTATAATTTGAGACATGAGAAGTTGTGGTTGTCATGAACCAGTTTTCTCCTCTTTGGTATCATGGGAGCATGTGGAGTGTGTAGTAAATGTAGAAATGGCAAGAGAGAATGCAGTGCTTCCTGATAAAAAAAAAGTAATTGTTTTTAGAAAATGTAGTACTTTACTTGGAGGGGGTGGGTGTTGTTGATCTCAGGTATTTCACAAACAGTCTGTCCACCTGCTACAACTACAAGTTTACAGGCCCATGCTGTGTATTGCTAGAATCCAACGTGTGTGTTGAAGTGGATCCCTCGTGAAGTGGTTTTTTGTACAGTGAAGGTAAGAAGTGGAGGTTGGACTGTTGGAGGAGGGTAAGTGTAAATGGAGGCCAGAAGGCAGTGAAACTTTGAGTGCCCCCCAAATTCATATTACATCATTCACGGGTTTCCTCAAATCTCCCATGTATGCTGTAGAGATTTGACGTATACATTGTCATTTCTTTGTTGACTCCTTTTACTCGTATATAGGCGAAAATTTGTGTTATGTTTGACCATCCACTGTTGAAGATTGATGTTGCTTGAACCTCTATATGTGACAGCTAACTGCATATGACTCTCACATATATTGAAAGTTAAAAGTGAAGATTATTGTTGCTTGATGCAAAGCACTTTCTAGTGAAGGGGTTCTCTTCGTCTTTCTTTTGATTGATGAACTTTCTGATGGAAGTTCATGAATAATTGTGTCAGTTCCTTCCTTCATTGACTCATTCTCCGATTCATTATAGAATGTTTCCTCTTATAATAAAGAATCTATACAAAAGGGATTCATTTATATTTCTTTGTTCCAGGTGGTTCTTTTCTCCGACTATTTATTTGTCTTCTATTTTTTTCCACACCAATGAAGATGGCCTTAACGTTTTTTTAATTTCCCTGTAGATATCAGTGAACTAAATCTACCTGAAACGTGTAGCATATCATTCCCTAACGGAAAAGATGACCTCATGAACTTTGAAGTCACCATTCGGCCTGATGAAGGATATTATGTGTAAGTAGTTCTGCTGAAATTATTCTCTCTTTAATGAAGTATATTCCTGAAAAAAGTTTACTTCGACTTGGATATACCTTTCTGCTTTCGTATTTTTATGGAAAATTGGTGCACTTCAAGTTAGCTTTCCTCGGTGCTGATAACGTACATTGTATTATTTGTTCGTATTCAGGGGTGGAACTTTTGTCTTCTCTTTCAGCATTTCTTCTATTTATCCTCATGAGGCTCCAAAGGTCAAGTGCAAGACAAAGGTGGGTAATGGTTTATAGCTTTTTTTCTTTCGATTCTCTTTTAATTTCTTGAAGAATGAATTTAGATTCCAATTGTTTTATCCATAGCTCTGGAAACTCGGATTTTGCAGGTTTACCACCCGAATATTGACTTGGAAGGTAATGTGTGTCTCAACATTCTTCGAGAAGACTGGAAACCTGTGCTCAACATCAACACAATAATCTATG</genome_strand>
        <mrna_strand>AGAC-CCATCATTCTTCTTCAATC-T-TTTTTGCAGATTCTCATTTCAGCAGCAGCAGCAGCAGGTTCACATAATTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG-ACCATGATTAAGCTATTTAAAGTAAAGGAGAAACAGAGAGAGCTTGCTGAAAATGCTAATGGAAAGCCTCCAATTAAGAAACAAAGTGCAGGAGAGCTGCGTCTTCATAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAGTGAACTAAATCTACCTAAAACGTGTAGCATATCATTCCCTAACGGAAAAGATGACCTCATGAACTTTGAAGTCACCATTCGGCCTGATGACGGATATTATAT............................................................................................................................................................................GGGTGGAACTTTTGTCTTCTCTTTCAACATTTCTTCTATTTATCCTCATGAAGCTCCAAAAGTCTAGTGCAAGACGAAC..............................................................................................................GTTTACCACCCGAATATTGACTTGGAAGGAAATGTATGTCTCAACATTCTTCTAGAAGACTGGAAACCTGTGCTCAACATCCACACGATAATCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297718" ref_strand="-" ref_description="SGN-E297718 [cLET-28-K18]">
      <seq>ctacctgaaacgtgtagcatatcattccctaacggaaaagatgacctcatgaactttgaagtcaccattcggcctgatgaaggatattatgtgggtggaacttttgtcttctctttcagcatttcttctatttatcctcatgaggctccaaaggtcaagtgcaagacaaagggtttaccacccgaatattgacttggaaggtaatgtgtgtctcaacattcttcgagaagactggaaacctgtgctcaacatcaacacaataatctatggcttgtatcatttgttcacggaacccaatcacgaggatcccctcaatcatgaagcagctgctgtgttgagtgacaaccccagcttgttcgagtccaatgtcagaagggcaatgtctgcaggatatgtagaagaaacgttcttccaacgctgcatataaacgtctcagatgcagaatcgattagttgatgatgcttacaccagaagttgaaggctctgaaagtctgtgaagttgggaccaggaagaaccatttttacatgtgaaaaagatttgagtgcaaaaatgttattagatatttgcaaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="25486" stop="27018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25786" g_stop="25877" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25878" i_stop="26049" i_length="172">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26050" g_stop="26128" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="172" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26129" i_stop="26238" i_length="110">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26239" g_stop="26355" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="289" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26356" i_stop="26434" i_length="79">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26435" g_stop="26719" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="574" r_length="285" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E297718" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297718" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="25786" e_stop="25877"/>
          <exon e_start="26050" e_stop="26128"/>
          <exon e_start="26239" e_stop="26355"/>
          <exon e_start="26435" e_stop="26719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCTGAAACGTGTAGCATATCATTCCCTAACGGAAAAGATGACCTCATGAACTTTGAAGTCACCATTCGGCCTGATGAAGGATATTATGTGTAAGTAGTTCTGCTGAAATTATTCTCTCTTTAATGAAGTATATTCCTGAAAAAAGTTTACTTCGACTTGGATATACCTTTCTGCTTTCGTATTTTTATGGAAAATTGGTGCACTTCAAGTTAGCTTTCCTCGGTGCTGATAACGTACATTGTATTATTTGTTCGTATTCAGGGGTGGAACTTTTGTCTTCTCTTTCAGCATTTCTTCTATTTATCCTCATGAGGCTCCAAAGGTCAAGTGCAAGACAAA-GGTGGGTAATGGTTTATAGCTTTTTTTCTTTCGATTCTCTTTTAATTTCTTGAAGAATGAATTTAGATTCCAATTGTTTTATCCATAGCTCTGGAAACTCGGATTTTGCAGGTTTACCACCCGAATATTGACTTGGAAGGTAATGTGTGTCTCAACATTCTTCGAGAAGACTGGAAACCTGTGCTCAACATCAACACAATAATCTATGGCTTGTATCATTTGTTCACGGTACTTTAACTTCCTTCTAGTTTGATGTACTTTATGCTACTCTTAAGTAGTTGTTAGTTTATAACTTCCGCTTCTGCAGGAACCCAATCACGAGGATCCCCTCAATCATGAAGCAGCTGCTGTGTTGAGTGACAACCCCAGCTTGTTCGAGTCCAATGTCAGAAGGGCAATGTCTGGAGGATATGTAGGAGAAACGTTCTTCCAACGCTGCATATAAACGTCTCAGATGCAGAATCGATTAGTTGATGATGCTTACACCAGAAGTTGAAGGCTCTGAAAGTCTGTGAAGTTGGGACCAGGAAGAACCATTTTTACATGTGAAAAAGATTTGAGTGCAAAAATGTTATTAGATATTTGCAAAACT</genome_strand>
        <mrna_strand>CTACCTGAAACGTGTAGCATATCATTCCCTAACGGAAAAGATGACCTCATGAACTTTGAAGTCACCATTCGGCCTGATGAAGGATATTATGT............................................................................................................................................................................GGGTGGAACTTTTGTCTTCTCTTTCAGCATTTCTTCTATTTATCCTCATGAGGCTCCAAAGGTCAAGTGCAAGACAAAGG..............................................................................................................GTTTACCACCCGAATATTGACTTGGAAGGTAATGTGTGTCTCAACATTCTTCGAGAAGACTGGAAACCTGTGCTCAACATCAACACAATAATCTATGGCTTGTATCATTTGTTCACG...............................................................................GAACCCAATCACGAGGATCCCCTCAATCATGAAGCAGCTGCTGTGTTGAGTGACAACCCCAGCTTGTTCGAGTCCAATGTCAGAAGGGCAATGTCTGCAGGATATGTAGAAGAAACGTTCTTCCAACGCTGCATATAAACGTCTCAGATGCAGAATCGATTAGTTGATGATGCTTACACCAGAAGTTGAAGGCTCTGAAAGTCTGTGAAGTTGGGACCAGGAAGAACCATTTTTACATGTGAAAAAGATTTGAGTGCAAAAATGTTATTAGATATTTGCAAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397756" ref_strand="+" ref_description="SGN-E397756 [TUS-46-D1](-)">
      <seq>gaacttttgtcttctctttcagcattttttctatttatcctcatgaggctcctaaggtcaagtgcaagacaaaggtttaccacccgaatattgacttggaaggtaatgtgtgtctcaacattcttcgagaagactggaaacctgtgctcaacatcaacacaataatctatggcttgtatcatttgttcacggaacccaatcacgaggatcccctcaatcatgaagcagctgctgtgttgagtgacaaccccagcttgttcgagtccaatgtcagaagggcaatgtctggaggatatgtaggagaaacgttcttccaacgctgcatataaacgtgtcagatgcagaattgattagttgatgatgcttacaccagaagttgaaggctctgaaagtctgtgaagttgggaccaggaagaaccatttttacatgtgaaaaagatttgagtgcaaaaatgttattagatatttgcaaaacttaaaacctgcagaacgttttctgtatgtaagtgttaaaactgaagctgttaagagaccctttgcctggatgaatttatgtacaatctgaacttatgttttcgcgatcttgcgcttcaattaataaattatttataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="25755" stop="27140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26055" g_stop="26128" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26129" i_stop="26238" i_length="110">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26239" g_stop="26355" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="191" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26356" i_stop="26434" i_length="79">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26435" g_stop="26853" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="610" r_length="419" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E397756" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26055" e_stop="26128"/>
          <exon e_start="26239" e_stop="26355"/>
          <exon e_start="26435" e_stop="26853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTTTTGTCTTCTCTTTCAGCATTTCTTCTATTTATCCTCATGAGGCTCCAAAGGTCAAGTGCAAGACAAAGGTGGGTAATGGTTTATAGCTTTTTTTCTTTCGATTCTCTTTTAATTTCTTGAAGAATGAATTTAGATTCCAATTGTTTTATCCATAGCTCTGGAAACTCGGATTTTGCAGGTTTACCACCCGAATATTGACTTGGAAGGTAATGTGTGTCTCAACATTCTTCGAGAAGACTGGAAACCTGTGCTCAACATCAACACAATAATCTATGGCTTGTATCATTTGTTCACGGTACTTTAACTTCCTTCTAGTTTGATGTACTTTATGCTACTCTTAAGTAGTTGTTAGTTTATAACTTCCGCTTCTGCAGGAACCCAATCACGAGGATCCCCTCAATCATGAAGCAGCTGCTGTGTTGAGTGACAACCCCAGCTTGTTCGAGTCCAATGTCAGAAGGGCAATGTCTGGAGGATATGTAGGAGAAACGTTCTTCCAACGCTGCATATAAACGTCTCAGATGCAGAATCGATTAGTTGATGATGCTTACACCAGAAGTTGAAGGCTCTGAAAGTCTGTGAAGTTGGGACCAGGAAGAACCATTTTTACATGTGAAAAAGATTTGAGTGCAAAAATGTTATTAGATATTTGCAAAACTTAAAACCTGCAGAACGTTTTCTGTATGTAAGTGTTAAAACTGAAGCTGTTAAGAGACCCTTTGCCTGGATGAATTTATGTACAATCTGAACTTATGTTTTCGCGATCTTGCGCTTCAATTATCGTATTATTTAT</genome_strand>
        <mrna_strand>GAACTTTTGTCTTCTCTTTCAGCATTTTTTCTATTTATCCTCATGAGGCTCCTAAGGTCAAGTGCAAGACAAAG..............................................................................................................GTTTACCACCCGAATATTGACTTGGAAGGTAATGTGTGTCTCAACATTCTTCGAGAAGACTGGAAACCTGTGCTCAACATCAACACAATAATCTATGGCTTGTATCATTTGTTCACG...............................................................................GAACCCAATCACGAGGATCCCCTCAATCATGAAGCAGCTGCTGTGTTGAGTGACAACCCCAGCTTGTTCGAGTCCAATGTCAGAAGGGCAATGTCTGGAGGATATGTAGGAGAAACGTTCTTCCAACGCTGCATATAAACGTGTCAGATGCAGAATTGATTAGTTGATGATGCTTACACCAGAAGTTGAAGGCTCTGAAAGTCTGTGAAGTTGGGACCAGGAAGAACCATTTTTACATGTGAAAAAGATTTGAGTGCAAAAATGTTATTAGATATTTGCAAAACTTAAAACCTGCAGAACGTTTTCTGTATGTAAGTGTTAAAACTGAAGCTGTTAAGAGACCCTTTGCCTGGATGAATTTATGTACAATCTGAACTTATGTTTTCGCGATCTTGCGCTTCAATTAATAAATTATTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727937" ref_strand="+" ref_description="SGN-E727937 [LA16AG11]">
      <seq>gacatttagaaagcgagaaacaacaactacaaaatcatgatgtgggaagctggagaatcaccagcatcttcttcggccggtgccggagctggtggaagtggaggtgccggagttggtttaccggagagtggtggcggtggcggtggtgggataatgaaaccatcatggagagatatagataataacaagagaaaagagaggaggatgatagctgtagctgctaagatttatactggattattagctcaaggaaactataatcttccgaagcactgtgataacaatgaggttcttatagctctttgtagtgaagctggttggatcgttgagcctgatggtatcacttatcgcgagggatgcaagccagccccgatggagattggaggcacttctacaaacatcacgccaagttcttcacggcatcccagtcccccatcatcatactttgctagcccaattccatcttatcagccaagtcgaacttcctcttctttccccagtccatctcgtgctgatgccaacatgttatcacatccgtattcttttctccaaaatgtcgttccttcatcccttcctccattacgaatatcaaacagtgcccctgtaactccacctctttcatcaccaactaggcatcctaagcaaactttcaatttagaaactttggccaaagaatcaatgtttgctttaaacatccctttctttgctgcttcagcctcagcaagcccaactagggttcagcgttttactcctccaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="28334" stop="30850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28627" g_stop="28980" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28981" i_stop="30144" i_length="1164">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30145" g_stop="30550" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="760" r_length="406" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E727937" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28627" e_stop="28980"/>
          <exon e_start="30145" e_stop="30550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGAGAGAAAGCGAGAAACAACAACAACAAAATCATGATGTGGGAAGCTGGAGAATCACCAGCATCTTCTTCGGCCGGTGCCGGAGCTGGTGGAAGTGGAGGTGCCGGAGTTGGTTTACCGGAAAGTGGTGGTGGTGGTGGTGGTGGGAGAAGGAAACCATCATGGAGAGAAAGAGAGAATAACAGGAGAAGAGAGAGGAGGAGGAGAGCTGTAGCTGCTAAGATTTATACTGGTTTAAGAGCTCAAGGAAACTATAATCTTCCGAAGCACTGTGATAACAATGAAGTTCTTAAAGCTCTTTGTACTGAAGCTGGTTGGATCGTTGAACCTGATGGTACCACTTATCGCAAGGTTTTTCAATTTTTTTCCCTCTTCAATTTGCTTGATTCTTAGGTTAATTTCTATGTTTTTGGTGAACCCCATTACTGGGTTTTGCTTGGATTTGCTTAGATCTACAGGTTTGACAAATAGGTTTGCTTTTTTTTGGATCTAGATTGTATGGATTTTAGCATATATGAGCATCAATTTTTAAGTTGCTAAGCTTCTGGATTTGCTGAATTTCTTTGTTTTGCCTGTTTATTGTTCTTGTATGTTGGTTATTTTGAGAAATTAGAGTGATCTAGTGTATAGTTTTGTTAGAAACTGGAAGTGGTTTTTAGGGGGAAATGATTCAACTTTCCAGTTCAATTGTTGTTAATTTGGTAGTGCAAAAAGGGTGTCTTTGTTTGGAGCTTCTGGGGGTGGAGTTGGATGCCTTCGAGTTTCGCCTTAGGCTATGTTGCTTCGACTCTTCAAAATACCGATGGGTGTGTGTCGGATCCTCCAAGATTAGTGCATTGTTGTAGGATCTGCACAGGTATGAAATTGGAGAGACCGAGCAAGATAGGCTAAGGCGATAGTATCCAGCTTCACCCCAAAAGCTCCAAATAAAAGGACCTGTTTTTCATTACCAAATTAACAACAATTGAACTGGAAAGTTCAATCATTTTCCGTCCCGATGAGTGTGTGTCGAATCCTCCAAGATTAGTGCATTTTTGAAGGATCCGCATAGGTACGATATTGGTAAGTTTGAGCATCATGACCTTAGGTGTTTTTTTTTTCTGTAGTGAATGCTTGCCGAGATTCCAAATTTGTTTTTTGTTGAGGTTTCTTTTATTAGCTCAATTGCCGCGCTTTTCTCTCTGAAATCTCAAATTTCATGAGAACATTCGTGTTAGTGTTTTCTGAGTTTGTCCATATTAATTGCGTGGTTTGGGATTTAGAACTTAACCAATAAGCAATATTTGAGGTGAAGACATTTGCTGCTAGAATAATATGATCTCCCCGTTGGGTTGAGCGTTGGATCAATTTTCTGTGTTGTTATGTTATCCTGCAAATTATCTCTCTGAAACTCAAATATTACTAAACTAAAGTGTGTGGCTTGGTTAACTTAACAATATGCAAAACTTGGGATCTGTTTTAGGTAAATTATAATCTCTTTGATACTGACTTTGTTTCAACTATTATGTGATTCAGGGATGCAAGCCAACCCCGATGGAGATTGGAGGCACTTCAACAAACATCACGCCAAGTTCTTCACGGCATCCAAGTCCCCCATCATCATACTTTGCTAGCCCAATTCCATCTTATCAGCCAAGTCCAACTTCCTCTTCTTTCCCCAGTCCATCTCGTGCTGATGCCAACATGTTATCACATCCATATTCTTTTCTCCAAAATGTCGTTCCTTCATCCCTTCCTCCATTACGAATATCAAACAGTGCCCCTGTAACTCCACCTCTTTCATCACCAACTAGGCATCCTAAGCAAACTTTCAATTTAGAAACTTTGGCCAAAGAATCAATGTTTGCTTTAAACATCCCTTTCTTTGCTGCTTCAGCCCCAGCAAGCCCAACTAGGGTTCAGCGTTTTACTCCTCCAACTA</genome_strand>
        <mrna_strand>GACATTTAGAAAGCGAGAAACAACAACTACAAAATCATGATGTGGGAAGCTGGAGAATCACCAGCATCTTCTTCGGCCGGTGCCGGAGCTGGTGGAAGTGGAGGTGCCGGAGTTGGTTTACCGGAGAGTGGTGGCGGTGGCGGTGGTGGGATAATGAAACCATCATGGAGAGATATAGATAATAACAAGAGAAAAGAGAGGAGGATGATAGCTGTAGCTGCTAAGATTTATACTGGATTATTAGCTCAAGGAAACTATAATCTTCCGAAGCACTGTGATAACAATGAGGTTCTTATAGCTCTTTGTAGTGAAGCTGGTTGGATCGTTGAGCCTGATGGTATCACTTATCGCGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGCAAGCCAGCCCCGATGGAGATTGGAGGCACTTCTACAAACATCACGCCAAGTTCTTCACGGCATCCCAGTCCCCCATCATCATACTTTGCTAGCCCAATTCCATCTTATCAGCCAAGTCGAACTTCCTCTTCTTTCCCCAGTCCATCTCGTGCTGATGCCAACATGTTATCACATCCGTATTCTTTTCTCCAAAATGTCGTTCCTTCATCCCTTCCTCCATTACGAATATCAAACAGTGCCCCTGTAACTCCACCTCTTTCATCACCAACTAGGCATCCTAAGCAAACTTTCAATTTAGAAACTTTGGCCAAAGAATCAATGTTTGCTTTAAACATCCCTTTCTTTGCTGCTTCAGCCTCAGCAAGCCCAACTAGGGTTCAGCGTTTTACTCCTCCAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E747118" ref_strand="+" ref_description="SGN-E747118 [GI|14626760]">
      <seq>gaaacaacaacaacaaaatcatgatgtgggaagctggagaatcaccagcatcttcttcggccggtgccggagctggtggaagtggaggtgccggagttggtttaccggaaagtggtggtggtggtggtggtgggagaaggaaaccatcatggagagaaagagagaataacaggagaagagagaggaggaggagagctgtagctgctaagatttatactggtttaagagctcaaggaaactataatcttccgaagcactgtgataacaatgaagttcttaaagctctttgtactgaagctggttggatcgttgaacctgatggtaccacttatcgcaagggatgcaagccaaccccgatggagattggaggcacttcaacaaacatcacgccaagttcttcacggcatccaagtcccccatcatcatactttgctagcccaattccatcttatcagccaagtccaacttcctcttctttccccagtccatctcgtgctgatgccaacatgttatcacatccatattcttttctccaaaatgtcgttccttcatcccttcctccattacgaatatcaaacagtgcccctgtaactccacctctttcatcaccaactaggcatcctaagcaaactttcaatttagaaactttggccaaagaatcaatgtttgctttaaacatccctttctttgctgcttcagccccagcaagcccaactagggttcagcgttttactcctccaactatacccgagtgtgatgaatctgactcatctaccattgattcaggccagtggatcaactttcaaaagtatgcgtcaaatgttccaccttctccaacatttaatcttgtaaaacctgtgcctcagccgcttcgtcctaatgatatgatcacagacaagggtaagagcatagacttcgactttgaaaatgtatcagtcaaggcatgggaaggtgaaaggattcacgatgtaggattcgatgatctggaactcacacttggaagtggcaatgctcgcatatgattgagattctctgatttagttagctgatgaagcactttgcattccagtggattattccagcctcgtctggtgagatattgcccaaacgagagcttgcatgaatctcgtttgctacttaccttatgtataacattccttcccccttatttgaaaagcccccttcaaaatttatacaggtcttatcacaagcatttcgtgtagatatatgcttgcttctatggtcgagaatcaatttcttcattgtagactagatgaagcttcttcacaactatgaactatccatatttgtctattagaactcgttttcttttctttctgttggaactagctacagttgaagtcgatgatgtaccttgtagtctctctgatgtttttcgtgcacatcatgaaagacatgaaacgcgttacagtttatacattggagattttgtgttgtgtttggttgaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="28343" stop="31580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28643" g_stop="28980" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28981" i_stop="30144" i_length="1164">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30145" g_stop="31277" g_length="1133"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="1470" r_length="1132" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1471" polyA_stop="1494"/>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E747118" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1471</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28643" e_stop="28980"/>
          <exon e_start="30145" e_stop="31277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACAACAACAACAAAATCATGATGTGGGAAGCTGGAGAATCACCAGCATCTTCTTCGGCCGGTGCCGGAGCTGGTGGAAGTGGAGGTGCCGGAGTTGGTTTACCGGAAAGTGGTGGTGGTGGTGGTGGTGGGAGAAGGAAACCATCATGGAGAGAAAGAGAGAATAACAGGAGAAGAGAGAGGAGGAGGAGAGCTGTAGCTGCTAAGATTTATACTGGTTTAAGAGCTCAAGGAAACTATAATCTTCCGAAGCACTGTGATAACAATGAAGTTCTTAAAGCTCTTTGTACTGAAGCTGGTTGGATCGTTGAACCTGATGGTACCACTTATCGCAAGGTTTTTCAATTTTTTTCCCTCTTCAATTTGCTTGATTCTTAGGTTAATTTCTATGTTTTTGGTGAACCCCATTACTGGGTTTTGCTTGGATTTGCTTAGATCTACAGGTTTGACAAATAGGTTTGCTTTTTTTTGGATCTAGATTGTATGGATTTTAGCATATATGAGCATCAATTTTTAAGTTGCTAAGCTTCTGGATTTGCTGAATTTCTTTGTTTTGCCTGTTTATTGTTCTTGTATGTTGGTTATTTTGAGAAATTAGAGTGATCTAGTGTATAGTTTTGTTAGAAACTGGAAGTGGTTTTTAGGGGGAAATGATTCAACTTTCCAGTTCAATTGTTGTTAATTTGGTAGTGCAAAAAGGGTGTCTTTGTTTGGAGCTTCTGGGGGTGGAGTTGGATGCCTTCGAGTTTCGCCTTAGGCTATGTTGCTTCGACTCTTCAAAATACCGATGGGTGTGTGTCGGATCCTCCAAGATTAGTGCATTGTTGTAGGATCTGCACAGGTATGAAATTGGAGAGACCGAGCAAGATAGGCTAAGGCGATAGTATCCAGCTTCACCCCAAAAGCTCCAAATAAAAGGACCTGTTTTTCATTACCAAATTAACAACAATTGAACTGGAAAGTTCAATCATTTTCCGTCCCGATGAGTGTGTGTCGAATCCTCCAAGATTAGTGCATTTTTGAAGGATCCGCATAGGTACGATATTGGTAAGTTTGAGCATCATGACCTTAGGTGTTTTTTTTTTCTGTAGTGAATGCTTGCCGAGATTCCAAATTTGTTTTTTGTTGAGGTTTCTTTTATTAGCTCAATTGCCGCGCTTTTCTCTCTGAAATCTCAAATTTCATGAGAACATTCGTGTTAGTGTTTTCTGAGTTTGTCCATATTAATTGCGTGGTTTGGGATTTAGAACTTAACCAATAAGCAATATTTGAGGTGAAGACATTTGCTGCTAGAATAATATGATCTCCCCGTTGGGTTGAGCGTTGGATCAATTTTCTGTGTTGTTATGTTATCCTGCAAATTATCTCTCTGAAACTCAAATATTACTAAACTAAAGTGTGTGGCTTGGTTAACTTAACAATATGCAAAACTTGGGATCTGTTTTAGGTAAATTATAATCTCTTTGATACTGACTTTGTTTCAACTATTATGTGATTCAGGGATGCAAGCCAACCCCGATGGAGATTGGAGGCACTTCAACAAACATCACGCCAAGTTCTTCACGGCATCCAAGTCCCCCATCATCATACTTTGCTAGCCCAATTCCATCTTATCAGCCAAGTCCAACTTCCTCTTCTTTCCCCAGTCCATCTCGTGCTGATGCCAACATGTTATCACATCCATATTCTTTTCTCCAAAATGTCGTTCCTTCATCCCTTCCTCCATTACGAATATCAAACAGTGCCCCTGTAACTCCACCTCTTTCATCACCAACTAGGCATCCTAAGCAAACTTTCAATTTAGAAACTTTGGCCAAAGAATCAATGTTTGCTTTAAACATCCCTTTCTTTGCTGCTTCAGCCCCAGCAAGCCCAACTAGGGTTCAGCGTTTTACTCCTCCAACTATACCCGAGTGTGATGAATCTGACTCATCTACCATTGATTCAGGCCAGTGGATCAACTTTCAAAAGTATGCGTCAAATGTTCCACCTTCTCCAACATTTAATCTTGTAAAACCTGTGCCTCAGCCGCTTCGTCCTAATGATATGATCACAGACAAGGGTAAGAGCATAGACTTCGACTTTGAAAATGTATCAGTCAAGGCATGGGAAGGTGAAAGGATTCACGATGTAGGATTCGATGATCTGGAACTCACACTTGGAAGTGGCAATGCTCGCATATGATTGAGATTCTCTGATTTAGTTAGCTGATGAAGCACTTTGCATTCCAGTGGATTATTCCAGCCTCGTCTGGTGAGATATTGCCCAAACGTAGAGCTTGCATGAATCTCTGTTGCTACTTACCTTATGTATAACATTCCTTCCCCCCTTATTTGAAAAGCCCCCTTCAAAATTTATACAGGTCTTATCACAAGCATTTCGTGTAGATATATGCTTGCTTCTATGGTCGAGAATCAATTTCTTCATTGTAGACTAGATGAAGCTTCTTCACAACTATGAACTATCCATATTTGTCTATTAGAACTCGTTTTCTTTTCTTTCTGTTGGAACTAGCTACAGTTGAAGTCGATGATGTACCTTGTAGTCTCTCTGATGTTTTTCGTGCACATCATG-AAGACATGAAACGCGTTACAGTTTATACATTGGAGATTTTGTGTTGTGTTTGGTTGAAG</genome_strand>
        <mrna_strand>GAAACAACAACAACAAAATCATGATGTGGGAAGCTGGAGAATCACCAGCATCTTCTTCGGCCGGTGCCGGAGCTGGTGGAAGTGGAGGTGCCGGAGTTGGTTTACCGGAAAGTGGTGGTGGTGGTGGTGGTGGGAGAAGGAAACCATCATGGAGAGAAAGAGAGAATAACAGGAGAAGAGAGAGGAGGAGGAGAGCTGTAGCTGCTAAGATTTATACTGGTTTAAGAGCTCAAGGAAACTATAATCTTCCGAAGCACTGTGATAACAATGAAGTTCTTAAAGCTCTTTGTACTGAAGCTGGTTGGATCGTTGAACCTGATGGTACCACTTATCGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGCAAGCCAACCCCGATGGAGATTGGAGGCACTTCAACAAACATCACGCCAAGTTCTTCACGGCATCCAAGTCCCCCATCATCATACTTTGCTAGCCCAATTCCATCTTATCAGCCAAGTCCAACTTCCTCTTCTTTCCCCAGTCCATCTCGTGCTGATGCCAACATGTTATCACATCCATATTCTTTTCTCCAAAATGTCGTTCCTTCATCCCTTCCTCCATTACGAATATCAAACAGTGCCCCTGTAACTCCACCTCTTTCATCACCAACTAGGCATCCTAAGCAAACTTTCAATTTAGAAACTTTGGCCAAAGAATCAATGTTTGCTTTAAACATCCCTTTCTTTGCTGCTTCAGCCCCAGCAAGCCCAACTAGGGTTCAGCGTTTTACTCCTCCAACTATACCCGAGTGTGATGAATCTGACTCATCTACCATTGATTCAGGCCAGTGGATCAACTTTCAAAAGTATGCGTCAAATGTTCCACCTTCTCCAACATTTAATCTTGTAAAACCTGTGCCTCAGCCGCTTCGTCCTAATGATATGATCACAGACAAGGGTAAGAGCATAGACTTCGACTTTGAAAATGTATCAGTCAAGGCATGGGAAGGTGAAAGGATTCACGATGTAGGATTCGATGATCTGGAACTCACACTTGGAAGTGGCAATGCTCGCATATGATTGAGATTCTCTGATTTAGTTAGCTGATGAAGCACTTTGCATTCCAGTGGATTATTCCAGCCTCGTCTGGTGAGATATTGCCCAAACG-AGAGCTTGCATGAATCTCGTTTGCTACTTACCTTATGTATAACATTCCTT-CCCCCTTATTTGAAAAGCCCCCTTCAAAATTTATACAGGTCTTATCACAAGCATTTCGTGTAGATATATGCTTGCTTCTATGGTCGAGAATCAATTTCTTCATTGTAGACTAGATGAAGCTTCTTCACAACTATGAACTATCCATATTTGTCTATTAGAACTCGTTTTCTTTTCTTTCTGTTGGAACTAGCTACAGTTGAAGTCGATGATGTACCTTGTAGTCTCTCTGATGTTTTTCGTGCACATCATGAAAGACATGAAACGCGTTACAGTTTATACATTGGAGATTTTGTGTTGTGTTTGGTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212342" ref_strand="+" ref_description="SGN-E212342 [cLEC-74-A6]">
      <seq>caacaacaaaatcatgatgtgggaagctggagaatcaccagcatcttcttcggccggtgccggagctggtggaagtggaggtgccggagttggtttaccggaaagtggtggtggtggtggtggtgggagaaggaaaccatcatggagagaaagagagaataacaggagaagagagaggaggaggagagctgtagctgctaagatttatactggtttaagagctcaaggaaactataatcttccgaagcactgtgataacaatgaagttcttaaagctctttgtactgaagctggttggatcgttgaacctgatggtaccacttatcgcaagggatgcaagccaaccccgatggagattggaggcacttcaacaaacatcacgccaagttcttcacggcatccaagtcccccatcatcatactttgctagcccaattccatcttatcagccaagtccaacttcctcttctttccccagtccatctcgtgctgatgccaacatgtcatcacatccatattcttttctccaaaatgtcgttccttcatcccttccctcattacgaatatcaaacagtgcccctgtaactccacctctttcatcacaactangcatccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="28350" stop="30730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28650" g_stop="28980" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28981" i_stop="30144" i_length="1164">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30145" g_stop="30430" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="616" r_length="285" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E212342" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28650" e_stop="28980"/>
          <exon e_start="30145" e_stop="30430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAACAAAATCATGATGTGGGAAGCTGGAGAATCACCAGCATCTTCTTCGGCCGGTGCCGGAGCTGGTGGAAGTGGAGGTGCCGGAGTTGGTTTACCGGAAAGTGGTGGTGGTGGTGGTGGTGGGAGAAGGAAACCATCATGGAGAGAAAGAGAGAATAACAGGAGAAGAGAGAGGAGGAGGAGAGCTGTAGCTGCTAAGATTTATACTGGTTTAAGAGCTCAAGGAAACTATAATCTTCCGAAGCACTGTGATAACAATGAAGTTCTTAAAGCTCTTTGTACTGAAGCTGGTTGGATCGTTGAACCTGATGGTACCACTTATCGCAAGGTTTTTCAATTTTTTTCCCTCTTCAATTTGCTTGATTCTTAGGTTAATTTCTATGTTTTTGGTGAACCCCATTACTGGGTTTTGCTTGGATTTGCTTAGATCTACAGGTTTGACAAATAGGTTTGCTTTTTTTTGGATCTAGATTGTATGGATTTTAGCATATATGAGCATCAATTTTTAAGTTGCTAAGCTTCTGGATTTGCTGAATTTCTTTGTTTTGCCTGTTTATTGTTCTTGTATGTTGGTTATTTTGAGAAATTAGAGTGATCTAGTGTATAGTTTTGTTAGAAACTGGAAGTGGTTTTTAGGGGGAAATGATTCAACTTTCCAGTTCAATTGTTGTTAATTTGGTAGTGCAAAAAGGGTGTCTTTGTTTGGAGCTTCTGGGGGTGGAGTTGGATGCCTTCGAGTTTCGCCTTAGGCTATGTTGCTTCGACTCTTCAAAATACCGATGGGTGTGTGTCGGATCCTCCAAGATTAGTGCATTGTTGTAGGATCTGCACAGGTATGAAATTGGAGAGACCGAGCAAGATAGGCTAAGGCGATAGTATCCAGCTTCACCCCAAAAGCTCCAAATAAAAGGACCTGTTTTTCATTACCAAATTAACAACAATTGAACTGGAAAGTTCAATCATTTTCCGTCCCGATGAGTGTGTGTCGAATCCTCCAAGATTAGTGCATTTTTGAAGGATCCGCATAGGTACGATATTGGTAAGTTTGAGCATCATGACCTTAGGTGTTTTTTTTTTCTGTAGTGAATGCTTGCCGAGATTCCAAATTTGTTTTTTGTTGAGGTTTCTTTTATTAGCTCAATTGCCGCGCTTTTCTCTCTGAAATCTCAAATTTCATGAGAACATTCGTGTTAGTGTTTTCTGAGTTTGTCCATATTAATTGCGTGGTTTGGGATTTAGAACTTAACCAATAAGCAATATTTGAGGTGAAGACATTTGCTGCTAGAATAATATGATCTCCCCGTTGGGTTGAGCGTTGGATCAATTTTCTGTGTTGTTATGTTATCCTGCAAATTATCTCTCTGAAACTCAAATATTACTAAACTAAAGTGTGTGGCTTGGTTAACTTAACAATATGCAAAACTTGGGATCTGTTTTAGGTAAATTATAATCTCTTTGATACTGACTTTGTTTCAACTATTATGTGATTCAGGGATGCAAGCCAACCCCGATGGAGATTGGAGGCACTTCAACAAACATCACGCCAAGTTCTTCACGGCATCCAAGTCCCCCATCATCATACTTTGCTAGCCCAATTCCATCTTATCAGCCAAGTCCAACTTCCTCTTCTTTCCCCAGTCCATCTCGTGCTGATGCCAACATGTTATCACATCCATATTCTTTTCTCCAAAATGTCGTTCCTTCATCCCTTCCTCCATTACGAATATCAAACAGTGCCCCTGTAACTCCACCTCTTTCATCACCAACTAGGCATCCTA</genome_strand>
        <mrna_strand>CAACAACAAAATCATGATGTGGGAAGCTGGAGAATCACCAGCATCTTCTTCGGCCGGTGCCGGAGCTGGTGGAAGTGGAGGTGCCGGAGTTGGTTTACCGGAAAGTGGTGGTGGTGGTGGTGGTGGGAGAAGGAAACCATCATGGAGAGAAAGAGAGAATAACAGGAGAAGAGAGAGGAGGAGGAGAGCTGTAGCTGCTAAGATTTATACTGGTTTAAGAGCTCAAGGAAACTATAATCTTCCGAAGCACTGTGATAACAATGAAGTTCTTAAAGCTCTTTGTACTGAAGCTGGTTGGATCGTTGAACCTGATGGTACCACTTATCGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGCAAGCCAACCCCGATGGAGATTGGAGGCACTTCAACAAACATCACGCCAAGTTCTTCACGGCATCCAAGTCCCCCATCATCATACTTTGCTAGCCCAATTCCATCTTATCAGCCAAGTCCAACTTCCTCTTCTTTCCCCAGTCCATCTCGTGCTGATGCCAACATGTCATCACATCCATATTCTTTTCTCCAAAATGTCGTTCCTTCATCCCTTCCCTCATTACGAATATCAAACAGTGCCCCTGTAACTCCACCTCTTTCATCA-CAACTANGCATCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478750" ref_strand="+" ref_description="SGN-E478750 [cSTD-6-J10]">
      <seq>ccatcatggagagaaagagagaataacaggagaagagagagaaggaggagagctgtagctgctaagatttatactggtttaagagctcaaggaaactataatcttcctaaacactgtgataacaatgaagttcttaaagctctttgtactgaagctggttggatcgttgaacctgatggtaccacttatcgcaagggatgcaagccaaccccgatggagattggaggcacttcaacaaacatcacgccaagttcttcacggcatccaagtcccccgtcatcatactttgctagcccaattccatcttatcagccaagtccaacttcctcttctttccccagtccatcccgtgctgatgctaacatgtcatcacatccatattcttttctccataatgtcatcccttcatcccttcctccattacgaatatcaaacagtgcccctgtaactccacctctttcatcaccaactaggcatcctaagcaaacattcaatttagagactttggccaaagaatcaatgtttgctttaaacatccctttctttgctgcttcagccccagcaagcccaactagaggtcagcgttttactcctccaactatacccgagtgtgatgaatctgactcatctaccattgattcaggccagtggatcaactttcaaaagtacgccggcaacgttccaccttctccacatttaatcttgtaaaacctgtgcctcagccacttcgtcctaatgatatgatcacagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="28486" stop="31002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28786" g_stop="28980" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28981" i_stop="30144" i_length="1164">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30145" g_stop="30702" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="752" r_length="557" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E478750" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28786" e_stop="28980"/>
          <exon e_start="30145" e_stop="30702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATCATGGAGAGAAAGAGAGAATAACAGGAGAAGAGAGAGGAGGAGGAGAGCTGTAGCTGCTAAGATTTATACTGGTTTAAGAGCTCAAGGAAACTATAATCTTCCGAAGCACTGTGATAACAATGAAGTTCTTAAAGCTCTTTGTACTGAAGCTGGTTGGATCGTTGAACCTGATGGTACCACTTATCGCAAGGTTTTTCAATTTTTTTCCCTCTTCAATTTGCTTGATTCTTAGGTTAATTTCTATGTTTTTGGTGAACCCCATTACTGGGTTTTGCTTGGATTTGCTTAGATCTACAGGTTTGACAAATAGGTTTGCTTTTTTTTGGATCTAGATTGTATGGATTTTAGCATATATGAGCATCAATTTTTAAGTTGCTAAGCTTCTGGATTTGCTGAATTTCTTTGTTTTGCCTGTTTATTGTTCTTGTATGTTGGTTATTTTGAGAAATTAGAGTGATCTAGTGTATAGTTTTGTTAGAAACTGGAAGTGGTTTTTAGGGGGAAATGATTCAACTTTCCAGTTCAATTGTTGTTAATTTGGTAGTGCAAAAAGGGTGTCTTTGTTTGGAGCTTCTGGGGGTGGAGTTGGATGCCTTCGAGTTTCGCCTTAGGCTATGTTGCTTCGACTCTTCAAAATACCGATGGGTGTGTGTCGGATCCTCCAAGATTAGTGCATTGTTGTAGGATCTGCACAGGTATGAAATTGGAGAGACCGAGCAAGATAGGCTAAGGCGATAGTATCCAGCTTCACCCCAAAAGCTCCAAATAAAAGGACCTGTTTTTCATTACCAAATTAACAACAATTGAACTGGAAAGTTCAATCATTTTCCGTCCCGATGAGTGTGTGTCGAATCCTCCAAGATTAGTGCATTTTTGAAGGATCCGCATAGGTACGATATTGGTAAGTTTGAGCATCATGACCTTAGGTGTTTTTTTTTTCTGTAGTGAATGCTTGCCGAGATTCCAAATTTGTTTTTTGTTGAGGTTTCTTTTATTAGCTCAATTGCCGCGCTTTTCTCTCTGAAATCTCAAATTTCATGAGAACATTCGTGTTAGTGTTTTCTGAGTTTGTCCATATTAATTGCGTGGTTTGGGATTTAGAACTTAACCAATAAGCAATATTTGAGGTGAAGACATTTGCTGCTAGAATAATATGATCTCCCCGTTGGGTTGAGCGTTGGATCAATTTTCTGTGTTGTTATGTTATCCTGCAAATTATCTCTCTGAAACTCAAATATTACTAAACTAAAGTGTGTGGCTTGGTTAACTTAACAATATGCAAAACTTGGGATCTGTTTTAGGTAAATTATAATCTCTTTGATACTGACTTTGTTTCAACTATTATGTGATTCAGGGATGCAAGCCAACCCCGATGGAGATTGGAGGCACTTCAACAAACATCACGCCAAGTTCTTCACGGCATCCAAGTCCCCCATCATCATACTTTGCTAGCCCAATTCCATCTTATCAGCCAAGTCCAACTTCCTCTTCTTTCCCCAGTCCATCTCGTGCTGATGCCAACATGTTATCACATCCATATTCTTTTCTCCAAAATGTCGTTCCTTCATCCCTTCCTCCATTACGAATATCAAACAGTGCCCCTGTAACTCCACCTCTTTCATCACCAACTAGGCATCCTAAGCAAACTTTCAATTTAGAAACTTTGGCCAAAGAATCAATGTTTGCTTTAAACATCCCTTTCTTTGCTGCTTCAGCCCCAGCAAGCCCAACTAGGGTTCAGCGTTTTACTCCTCCAACTATACCCGAGTGTGATGAATCTGACTCATCTACCATTGATTCAGGCCAGTGGATCAACTTTCAAAAGTATGCGTCAAATGTTCCACCTTCTCCAACATTTAATCTTGTAAAACCTGTGCCTCAGCCGCTTCGTCCTAATGATATGATCACAGAC</genome_strand>
        <mrna_strand>CCATCATGGAGAGAAAGAGAGAATAACAGGAGAAGAGAGAGAAGGAGGAGAGCTGTAGCTGCTAAGATTTATACTGGTTTAAGAGCTCAAGGAAACTATAATCTTCCTAAACACTGTGATAACAATGAAGTTCTTAAAGCTCTTTGTACTGAAGCTGGTTGGATCGTTGAACCTGATGGTACCACTTATCGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGCAAGCCAACCCCGATGGAGATTGGAGGCACTTCAACAAACATCACGCCAAGTTCTTCACGGCATCCAAGTCCCCCGTCATCATACTTTGCTAGCCCAATTCCATCTTATCAGCCAAGTCCAACTTCCTCTTCTTTCCCCAGTCCATCCCGTGCTGATGCTAACATGTCATCACATCCATATTCTTTTCTCCATAATGTCATCCCTTCATCCCTTCCTCCATTACGAATATCAAACAGTGCCCCTGTAACTCCACCTCTTTCATCACCAACTAGGCATCCTAAGCAAACATTCAATTTAGAGACTTTGGCCAAAGAATCAATGTTTGCTTTAAACATCCCTTTCTTTGCTGCTTCAGCCCCAGCAAGCCCAACTAGAGGTCAGCGTTTTACTCCTCCAACTATACCCGAGTGTGATGAATCTGACTCATCTACCATTGATTCAGGCCAGTGGATCAACTTTCAAAAGTACGCCGGCAACGTTCCACCTTCTCC-ACATTTAATCTTGTAAAACCTGTGCCTCAGCCACTTCGTCCTAATGATATGATCACAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449166" ref_strand="+" ref_description="SGN-E449166 [cSTS-5-H7]">
      <seq>agaaagagagaatacaggagaagagagagaaggaggagagctgtagctgctaagatttatactggtttaagagctcaaggaaactataatcttcctaaacactgtgataacaatgaagttcttaaagctctttgtactgaagctggttggatcgttgaacctgatggtaccacttatcgcaagggatgcaagccaaccccgatggagattggaggcacttcaacaaacatcacgccaagttcttcacggcatccaagtcccccgtcatcatactttgctagcccaattccatcttatcagccaagtccaacttcctcttctttccccagcccatcccgtgctgatgctaacatgtcatcacatccatattcttttctccataatgtcatcccttcatcccttcctccattacgaatatcaaacagtgcccctgtaactccacctctttcatcaccaactaggcatcctaagcaaacattcaatttagagactttggccaaagaatcaatgtttgctttaaacatccctttctttgctgcttcagccccagcaagcccaactaggggtcagcgttttactcctccaacatttaatcttgtaaaacctgtgcctcagccactttgtcctaatgatatgatcacagacaagggtaagagcatagacttcgactttgaaaatgtatcagtcaaggcatgggaaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="28497" stop="31058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28797" g_stop="28980" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28981" i_stop="30144" i_length="1164">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30145" g_stop="30548" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="587" r_length="404" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30549" i_stop="30644" i_length="96">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30645" g_stop="30759" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="702" r_length="115" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E449166" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28797" e_stop="28980"/>
          <exon e_start="30145" e_stop="30548"/>
          <exon e_start="30645" e_stop="30759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGAGAGAATAACAGGAGAAGAGAGAGGAGGAGGAGAGCTGTAGCTGCTAAGATTTATACTGGTTTAAGAGCTCAAGGAAACTATAATCTTCCGAAGCACTGTGATAACAATGAAGTTCTTAAAGCTCTTTGTACTGAAGCTGGTTGGATCGTTGAACCTGATGGTACCACTTATCGCAAGGTTTTTCAATTTTTTTCCCTCTTCAATTTGCTTGATTCTTAGGTTAATTTCTATGTTTTTGGTGAACCCCATTACTGGGTTTTGCTTGGATTTGCTTAGATCTACAGGTTTGACAAATAGGTTTGCTTTTTTTTGGATCTAGATTGTATGGATTTTAGCATATATGAGCATCAATTTTTAAGTTGCTAAGCTTCTGGATTTGCTGAATTTCTTTGTTTTGCCTGTTTATTGTTCTTGTATGTTGGTTATTTTGAGAAATTAGAGTGATCTAGTGTATAGTTTTGTTAGAAACTGGAAGTGGTTTTTAGGGGGAAATGATTCAACTTTCCAGTTCAATTGTTGTTAATTTGGTAGTGCAAAAAGGGTGTCTTTGTTTGGAGCTTCTGGGGGTGGAGTTGGATGCCTTCGAGTTTCGCCTTAGGCTATGTTGCTTCGACTCTTCAAAATACCGATGGGTGTGTGTCGGATCCTCCAAGATTAGTGCATTGTTGTAGGATCTGCACAGGTATGAAATTGGAGAGACCGAGCAAGATAGGCTAAGGCGATAGTATCCAGCTTCACCCCAAAAGCTCCAAATAAAAGGACCTGTTTTTCATTACCAAATTAACAACAATTGAACTGGAAAGTTCAATCATTTTCCGTCCCGATGAGTGTGTGTCGAATCCTCCAAGATTAGTGCATTTTTGAAGGATCCGCATAGGTACGATATTGGTAAGTTTGAGCATCATGACCTTAGGTGTTTTTTTTTTCTGTAGTGAATGCTTGCCGAGATTCCAAATTTGTTTTTTGTTGAGGTTTCTTTTATTAGCTCAATTGCCGCGCTTTTCTCTCTGAAATCTCAAATTTCATGAGAACATTCGTGTTAGTGTTTTCTGAGTTTGTCCATATTAATTGCGTGGTTTGGGATTTAGAACTTAACCAATAAGCAATATTTGAGGTGAAGACATTTGCTGCTAGAATAATATGATCTCCCCGTTGGGTTGAGCGTTGGATCAATTTTCTGTGTTGTTATGTTATCCTGCAAATTATCTCTCTGAAACTCAAATATTACTAAACTAAAGTGTGTGGCTTGGTTAACTTAACAATATGCAAAACTTGGGATCTGTTTTAGGTAAATTATAATCTCTTTGATACTGACTTTGTTTCAACTATTATGTGATTCAGGGATGCAAGCCAACCCCGATGGAGATTGGAGGCACTTCAACAAACATCACGCCAAGTTCTTCACGGCATCCAAGTCCCCCATCATCATACTTTGCTAGCCCAATTCCATCTTATCAGCCAAGTCCAACTTCCTCTTCTTTCCCCAGTCCATCTCGTGCTGATGCCAACATGTTATCACATCCATATTCTTTTCTCCAAAATGTCGTTCCTTCATCCCTTCCTCCATTACGAATATCAAACAGTGCCCCTGTAACTCCACCTCTTTCATCACCAACTAGGCATCCTAAGCAAACTTTCAATTTAGAAACTTTGGCCAAAGAATCAATGTTTGCTTTAAACATCCCTTTCTTTGCTGCTTCAGCCCCAGCAAGCCCAACTAGGGTTCAGCGTTTTACTCCTCCAACTATACCCGAGTGTGATGAATCTGACTCATCTACCATTGATTCAGGCCAGTGGATCAACTTTCAAAAGTATGCGTCAAATGTTCCACCTTCTCCAACATTTAATCTTGTAAAACCTGTGCCTCAGCCGCTTCGTCCTAATGATATGATCACAGACAAGGGTAAGAGCATAGACTTCGACTTTGAAAATGTATCAGTCAAGGCATGGGAAGGT</genome_strand>
        <mrna_strand>AGAAAGAGAGAAT-ACAGGAGAAGAGAGAGAAGGAGGAGAGCTGTAGCTGCTAAGATTTATACTGGTTTAAGAGCTCAAGGAAACTATAATCTTCCTAAACACTGTGATAACAATGAAGTTCTTAAAGCTCTTTGTACTGAAGCTGGTTGGATCGTTGAACCTGATGGTACCACTTATCGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGCAAGCCAACCCCGATGGAGATTGGAGGCACTTCAACAAACATCACGCCAAGTTCTTCACGGCATCCAAGTCCCCCGTCATCATACTTTGCTAGCCCAATTCCATCTTATCAGCCAAGTCCAACTTCCTCTTCTTTCCCCAGCCCATCCCGTGCTGATGCTAACATGTCATCACATCCATATTCTTTTCTCCATAATGTCATCCCTTCATCCCTTCCTCCATTACGAATATCAAACAGTGCCCCTGTAACTCCACCTCTTTCATCACCAACTAGGCATCCTAAGCAAACATTCAATTTAGAGACTTTGGCCAAAGAATCAATGTTTGCTTTAAACATCCCTTTCTTTGCTGCTTCAGCCCCAGCAAGCCCAACTAGGGGTCAGCGTTTTACTCCTCCAAC................................................................................................ATTTAATCTTGTAAAACCTGTGCCTCAGCCACTTTGTCCTAATGATATGATCACAGACAAGGGTAAGAGCATAGACTTCGACTTTGAAAATGTATCAGTCAAGGCATGGGAAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467426" ref_strand="+" ref_description="SGN-E467426 [cSTB-48-B16]">
      <seq>gagaagagagaggaggaggagagctgtagctgctaagatttatactggtttaagagctcaaggaaactataatcttcctaaacactgtgataacaatgaaggtcttaaagctctttgtactgaagctggttggatcgttgaacctgatggtaccacttatcgcaagggatgcaagccaaccccgatggagattggaggcacttcaacaaacatcacgccaagttcttcacggcatccaagtcccccgtcatcatactttgctagcccaattccatcttatcagccaagtccaacttcctcttctttccccagtccatcccgtgctgatgctaacatgtcatcacatccatattcttttctccataatgtcattccttcatcccttcctccattacgaatatcaaacagtgcccctgtaacgccaccactttcatcaccaactaggcatcctaagcaaacattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="28515" stop="30741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28815" g_stop="28980" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28981" i_stop="30144" i_length="1164">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30145" g_stop="30441" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="463" r_length="297" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E467426" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E467426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28815" e_stop="28980"/>
          <exon e_start="30145" e_stop="30441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAGAGAGAGGAGGAGGAGAGCTGTAGCTGCTAAGATTTATACTGGTTTAAGAGCTCAAGGAAACTATAATCTTCCGAAGCACTGTGATAACAATGAAGTTCTTAAAGCTCTTTGTACTGAAGCTGGTTGGATCGTTGAACCTGATGGTACCACTTATCGCAAGGTTTTTCAATTTTTTTCCCTCTTCAATTTGCTTGATTCTTAGGTTAATTTCTATGTTTTTGGTGAACCCCATTACTGGGTTTTGCTTGGATTTGCTTAGATCTACAGGTTTGACAAATAGGTTTGCTTTTTTTTGGATCTAGATTGTATGGATTTTAGCATATATGAGCATCAATTTTTAAGTTGCTAAGCTTCTGGATTTGCTGAATTTCTTTGTTTTGCCTGTTTATTGTTCTTGTATGTTGGTTATTTTGAGAAATTAGAGTGATCTAGTGTATAGTTTTGTTAGAAACTGGAAGTGGTTTTTAGGGGGAAATGATTCAACTTTCCAGTTCAATTGTTGTTAATTTGGTAGTGCAAAAAGGGTGTCTTTGTTTGGAGCTTCTGGGGGTGGAGTTGGATGCCTTCGAGTTTCGCCTTAGGCTATGTTGCTTCGACTCTTCAAAATACCGATGGGTGTGTGTCGGATCCTCCAAGATTAGTGCATTGTTGTAGGATCTGCACAGGTATGAAATTGGAGAGACCGAGCAAGATAGGCTAAGGCGATAGTATCCAGCTTCACCCCAAAAGCTCCAAATAAAAGGACCTGTTTTTCATTACCAAATTAACAACAATTGAACTGGAAAGTTCAATCATTTTCCGTCCCGATGAGTGTGTGTCGAATCCTCCAAGATTAGTGCATTTTTGAAGGATCCGCATAGGTACGATATTGGTAAGTTTGAGCATCATGACCTTAGGTGTTTTTTTTTTCTGTAGTGAATGCTTGCCGAGATTCCAAATTTGTTTTTTGTTGAGGTTTCTTTTATTAGCTCAATTGCCGCGCTTTTCTCTCTGAAATCTCAAATTTCATGAGAACATTCGTGTTAGTGTTTTCTGAGTTTGTCCATATTAATTGCGTGGTTTGGGATTTAGAACTTAACCAATAAGCAATATTTGAGGTGAAGACATTTGCTGCTAGAATAATATGATCTCCCCGTTGGGTTGAGCGTTGGATCAATTTTCTGTGTTGTTATGTTATCCTGCAAATTATCTCTCTGAAACTCAAATATTACTAAACTAAAGTGTGTGGCTTGGTTAACTTAACAATATGCAAAACTTGGGATCTGTTTTAGGTAAATTATAATCTCTTTGATACTGACTTTGTTTCAACTATTATGTGATTCAGGGATGCAAGCCAACCCCGATGGAGATTGGAGGCACTTCAACAAACATCACGCCAAGTTCTTCACGGCATCCAAGTCCCCCATCATCATACTTTGCTAGCCCAATTCCATCTTATCAGCCAAGTCCAACTTCCTCTTCTTTCCCCAGTCCATCTCGTGCTGATGCCAACATGTTATCACATCCATATTCTTTTCTCCAAAATGTCGTTCCTTCATCCCTTCCTCCATTACGAATATCAAACAGTGCCCCTGTAACTCCACCTCTTTCATCACCAACTAGGCATCCTAAGCAAACTTTC</genome_strand>
        <mrna_strand>GAGAAGAGAGAGGAGGAGGAGAGCTGTAGCTGCTAAGATTTATACTGGTTTAAGAGCTCAAGGAAACTATAATCTTCCTAAACACTGTGATAACAATGAAGGTCTTAAAGCTCTTTGTACTGAAGCTGGTTGGATCGTTGAACCTGATGGTACCACTTATCGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGCAAGCCAACCCCGATGGAGATTGGAGGCACTTCAACAAACATCACGCCAAGTTCTTCACGGCATCCAAGTCCCCCGTCATCATACTTTGCTAGCCCAATTCCATCTTATCAGCCAAGTCCAACTTCCTCTTCTTTCCCCAGTCCATCCCGTGCTGATGCTAACATGTCATCACATCCATATTCTTTTCTCCATAATGTCATTCCTTCATCCCTTCCTCCATTACGAATATCAAACAGTGCCCCTGTAACGCCACCACTTTCATCACCAACTAGGCATCCTAAGCAAACATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715954" ref_strand="+" ref_description="SGN-E715954 [FB15CH08]">
      <seq>cagcgttttactcctccaactatacccgagtgtgatgaatctgactcatctaccattgattcaggccagtggatcaactttcaaaagtatgcgtcaaatgttccaccttctccaacatttaatcttgtaaaacctgtgcctcagccgcttcgtcctaatgatatgatcacagacaagggtaagagcatagacttcgactttgaaaatgtatcagtcaaggcatgggaaggtgaaaggattcacgatgtaggattcgatgatctggaactcacacttggaagtggcaatgctcgcatatgattgagattctctgatttagttagctgatgaagcactttgcattccagtggattattccagcctcgtctggtgagatattgcccaaacgtagagcttgcatgaatctctgttgctacttaccttatgtataacattccttccccccttatttgaaaagcccccttcaaaattaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="30229" stop="31305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30529" g_stop="31006" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="479" polyA_stop="494"/>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E715954" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30529" e_stop="31006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCGTTTTACTCCTCCAACTATACCCGAGTGTGATGAATCTGACTCATCTACCATTGATTCAGGCCAGTGGATCAACTTTCAAAAGTATGCGTCAAATGTTCCACCTTCTCCAACATTTAATCTTGTAAAACCTGTGCCTCAGCCGCTTCGTCCTAATGATATGATCACAGACAAGGGTAAGAGCATAGACTTCGACTTTGAAAATGTATCAGTCAAGGCATGGGAAGGTGAAAGGATTCACGATGTAGGATTCGATGATCTGGAACTCACACTTGGAAGTGGCAATGCTCGCATATGATTGAGATTCTCTGATTTAGTTAGCTGATGAAGCACTTTGCATTCCAGTGGATTATTCCAGCCTCGTCTGGTGAGATATTGCCCAAACGTAGAGCTTGCATGAATCTCTGTTGCTACTTACCTTATGTATAACATTCCTTCCCCCCTTATTTGAAAAGCCCCCTTCAAAATTTATACAG</genome_strand>
        <mrna_strand>CAGCGTTTTACTCCTCCAACTATACCCGAGTGTGATGAATCTGACTCATCTACCATTGATTCAGGCCAGTGGATCAACTTTCAAAAGTATGCGTCAAATGTTCCACCTTCTCCAACATTTAATCTTGTAAAACCTGTGCCTCAGCCGCTTCGTCCTAATGATATGATCACAGACAAGGGTAAGAGCATAGACTTCGACTTTGAAAATGTATCAGTCAAGGCATGGGAAGGTGAAAGGATTCACGATGTAGGATTCGATGATCTGGAACTCACACTTGGAAGTGGCAATGCTCGCATATGATTGAGATTCTCTGATTTAGTTAGCTGATGAAGCACTTTGCATTCCAGTGGATTATTCCAGCCTCGTCTGGTGAGATATTGCCCAAACGTAGAGCTTGCATGAATCTCTGTTGCTACTTACCTTATGTATAACATTCCTTCCCCCCTTATTTGAAAAGCCCCCTTCAAAATTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318130" ref_strand="+" ref_description="SGN-E318130 [cTOA-29-H16]">
      <seq>ttcacagaagaattgtttgtgtatacatgctcaaagaaagctaaaaagctgctgtctttgcaatccttttttactaatgtctatatagatcaagaggccggtgggccttgagtgaaccttaatttcagtagtgaaaggaaaatgaccacaaaaccaaagaaaggatggaaatcaatttcgtctctcaatttgaagaccaaatcagcagcacatttttgtttgctccccaaatcaaagtcggatcgatatggtcctggcgacacacctgtttatctcaacgtgtatgacttgactcctatgaacggctatgtatattgggttggccttggtatttttcattctggtgtggaagttcatggtgtagaatatgcatttggagctcatgactattcaagcagtggtgtctttgaagttgaaccacgacaatgcccggggttcaagtttaggaagtccatattcattggggttacaaagttggatccctgtcaggttagagagtttatcgaacgtcaagctgctagctataatggtgacacatatcatttgatttcgaagaactgcaaccatttttgcaacgatacatgctacaagctcaccgggaaaaagattccaaagtgggtaaaccgacttgcaaaattaggttcatcattcaactgcatgctacccgaggctctaaaagttgccgcggtggaacatgacccctatggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="-" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="39814" stop="34674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39514" g_stop="39429" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39428" i_stop="36810" i_length="2619">
            <donor d_prob="0.785" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36809" g_stop="36544" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="352" r_length="266" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36543" i_stop="35781" i_length="763">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.733" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35780" g_stop="35493" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="640" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35492" i_stop="35043" i_length="450">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35042" g_stop="34974" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="709" r_length="69" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="-" ref_id="SGN-E318130" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39514" e_stop="39429"/>
          <exon e_start="36809" e_stop="36544"/>
          <exon e_start="35780" e_stop="35493"/>
          <exon e_start="35042" e_stop="34974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACAGAAGAATTGTTTGTGTATACATGCTCAAAGAAAGCTAAAAAGCTGCTGTCTTTGCAATCCTTTTTTACTAATGTCTATATGTAAGTCTTTCTTCTTCTTGAATTTTTGTTGTTGTTTCTTGAAAAAGCTTTCCCTTTGTTGTTGTTGTTGTGTGTAAAGATTGGATCTTTTTCACTTAATTCTTGGCTAAAGTTTGTGTTTGTTCAAGAATTGCTTTAAAATTTCAATCTTGCTGCAAGATCTGATAGTATAACTGGTATTTTCACAAGTTTTGATATGCTAATTTAGCCTGATTGCTTTGGTTTCCTTTTTTTCTTTCATTAGGTTTTCCATAAATATGCAAATTGTGTGTTGAATGAGAAATTTTTGGTGGTTTCCTTATGTGTGTATGGGGAAAATAGCATTTTAAGACATGGGTTTTGGATGAAAAGTTTGAAAGAATGAGTTTTTGTTGTAAAACCTTTGAATTTAAGTAGTTGAGTTAGAGAAATAGGTTGTGCTTTGAGGGGTAAAGTAGGAAATGTAATTAGCTTCGACGTGGCGGCGATTACATGTCTTTAGAGAGGTAGTAGTTGGTTTTTGTTGAATTAGTAGTAATTGATTCTGCTTGGCACATCTGGAGCAAAATAGAGTTATGTGTTTCGATGGATGTTGACAATTGCGTAATGATTGATATTTGATTCAATCTGTTTACGTTCCTTGCTTTTGACTTGGACTTCGAATCCTCTACCCCGAGGTGAGGTAAGGATGTTATTTAACTCTTTTTTGTTGGAAATAAGTAGGTAAGAGATGTTGTTATTAGTCTTTTGATGTCCTTTGTGAACGATCATTACTTTTTTGTTTTCGCATTTTCTATTTGACATCTATATTTAGCAGTTTGTTTGGTTTCTTGAATTTATATTCATCTTTTGAACCAGGATTTGTTCGCTATCCAAGAATGGATGTGAGCTTAAGGTTTCTTATAAAATTTACGTAGATCCTAAGCGTAAAGCATGTACATTTATGAGAAATGATTAATTAGGAAGTTAACATATTTTCTATTGGAACCATTAGCGAGATCGTTAGAGCTGAAGAAGAGTCAACTTAGTTTCCTTTTCACAACTGAGTTGAATTTGACTTTATGGTTCAAGGTAGTAATGGTTTGACAAGGGAATACGCAACCGCTATCCTTTGGGTGTGCGCATAGGAAAGTGTTTTCTTATGCGTATCTCTTCGTATTTATTGCTGCTAGATATTCAATTGTGCATATATGTTTCTAAATTAGCAAATTTATCCCTTATATTGGCCGATGAATAGATATTGTATTTATCCCTTGAAATGAACTTTGACTTTTTTTTAAAACTACAAGTAGATTAAAGAAAAAGACAATACTGGATGCACGCGACAGATTATAGTATACATTAGTGGTTCCCCACTCATACATATAGTAGACTTCTCTTTGAAGTTGAAAGAGACAGATATCCTATTTCTATTCTTTTCGTCCCTTTCATCATCTTTCTCCCTTCTGAAGATTCATTCTTATATTCCTTCTAGGAAATTTCCTTGGCATTGATTACCGACATTTTCCCCCTTCTGCCGAACACTTAATCTATTGTTGAACATTTTAAGGTTCGTTGAATACCGACATTTACCCCCTTCGGTCGAGCACTTAATCGATTATTGAAGATTTCAAGGTTGAGAAGTTAGAGTAGGGGCTATTTCACTAGGAAAGCTGCACAAGCAGATTACTCTATATTCTCAAAGGGTCAAACGGGGTATCATGGACCAGCTAACTTGATAAGTGAAATACGCTGTTATCAAAAGAACACTTCTATACCTTACTGCAAAAAGGAAATTGAGTTTCCATATTTCATGATCTAGTGTGAAGTTGGATAGAGAACGTAGTTTGGAAAGCAAGGCATATAATGCGGATGATGATCTCATGTTCATCAAAGTTTTTTTTTTGGAGGGACGGAGTAAAATGTCATCGAGCAAACGGTTTATCGTTTAGATCATCTCTCTGGTTCTTTACCTTCTTATTGAATGTATCAATAAATCTCTCATAAGCCTTATTCAGTTATAGTGCTAATCAACAACGCGTGCTCCATTGGGTTTTGCTGATGATCACGCTTCTTCTCAAGTCTCCCTACATTGTACTCAAAGTTGTTTAGATCAGGAAAGAAATATCACGTCAGTACAATGTCAGTGTAAGGCCAAAACTTTACCTGAATAGTTTAAAATTTTGTTTCCTCGCTATCGGTGCTAAGGCACGTGATATAGCTTAGTACAATAAACCAATTATGGTATAAAATGAGAACTCTAACTTGTAAAATCTGTAGGAAGCTAGTAATCCAATGGTCAACTAGTATGAGTTTTATTAGGTGACGGAAGTCATTTTTTTTGGGCTTGTTTTAGTGAAATGATATGTCTATAGTTGCGGAGATAAAGCACAGGTGTTGTAAAGCATTTCACCGATATTATTACATGCCTAACATTATCTAGTGCAGGATTTTCACATTCAGTAATACGATCATATTGAAATATTGCGATCAAACAGCCATGATATTGATCTTTCTGTGGTTCACTTCCTTATTTTCTCGTTCTCTGTTCGTTCTTTACTTTATTTTATTCTGAGTTTTCATTTTTTTACGAGTTTCATTCTTCGGGTTTCTGGATTCTTAAAGTTCCTGAAGTTTCCTTATGCTGCTTGGTTCATGCAGAGATCAAGAGGCCGGTGGGCCTTGAGTGAACCTTAATTTCAGTAGTGAAAGGAAAATGACCACAAAACCAAAGAAAGGATGGAAATCAATTTCGTCTCTCAATTTGAAGACCAAATCAGCAGCACATTTTTGTTTGCTCCCCAAATCAAAGTCGGATCGATATGGTCCTGGCGACACACCTGTTTATCTCAACGTGTATGACTTGACTCCTATGAACGGCTATGTATATTGGGTTGGCCTTGGTATTTTTCATTCTGGTGTGGAAGGTACAGTCTTGTTAGATTTTCCATCTTACCTTTTTTGTTATTCACGGCTAGTTGTTTGTCGATGTACACATGCGATATCCATTTTTTGATATCGATATGTTGCTTATATATTGCTTTTCCTAGTTCTGTTTGATCTAATATACTGCAGTATGTTTCATTACCCGATGAATTAGTTTGTCTATCTTGACTTTTGTTTTAGCTAATTAGCTGAAGTCTTGCGTTCAGATTCAGAACCGAAACTTGTTGGATATATCCATGTAGAATCCAACCTGTAAATGTGATTTATTTCATTCAAGAACAGATAGACGCATTTAATTAGTATCGATAGGCTAGCTTATAGTGGGAAATCTAATTCAAGTTTGAAGTTAATCGAACATAAGTCAACTTTGCTTTCCGTTCTTCGGTCTTAAACATGTAGACAACAGTCTTATATTTGAGGGATTGGAAAGTTATGGAGTGTGTAACAAATATATTAGTTTTCCACATTTTGGTTATTCCAAATTCGTTCATTTACGGAATATCATACAGAAGTCTTTTCTGCATCTATTTTTTACTTCTATTTTGGTTAATCCCCTTAAGAAAGCCTTATGTGGGACATTCCGACAGGGGAATCCCGAAGAAGTGTTAACGGTTGACCATTGCATGTTATAGTTTTATGAGGAAGTAGGAAGCCATATGTGAAACTTAACGTGGAGATTAGTTGTATTACTATTTGGCGCCTCATATTTTTGTACGTTCGGTGAAACTGACCCATATTTTACAGTTCATGGTGTAGAATATGCATTTGGAGCTCATGACTATTCAAGCAGTGGTGTCTTTGAAGTTGAACCACGACAATGCCCGGGGTTCAAGTTTAGGAAGTCCATATTCATTGGGGTTACAAAGTTGGATCCCTGTCAGGTTAGAGAGTTTATCGAACGTCAAGCTGCTAGCTATAATGGTGACACATATCATTTGATTTCGAAGAACTGCAACCATTTTTGCAACGATACATGCTACAAGCTCACCGGGAAAAAGATTCCAAAGTGGGTAAACCGACTTGCAAAATTAGGTAATCCTCTGTCATTTCACCTCTCTTTAGTTAACAATAACTACAACTAATAGTGCCTACAAGCATCTTTCTCTAGATTTATCTATGGACTCGGTCTCGGAGAACTAACCTCATAAATTAATGTGCTTCATAATGACAATCTGATTATGTTTGGTATGAAGGAGATCATTATATGGAAAATGTTTTTCTATTTTTCTATGTTTGGTTGGTCAAAATATTTCCAAAATCATTTTCTTCTGGAAAACAAGTTTCTTACAAATCATGATCTCTTCGTTGGAATAGGAATACAAGTTCCATAAATGACATTCCACGTTGATTGTCTTCTTCCTACCCCCGATCCCCCATCACGCCTCCTCCACCTGCATAAAAGTTCTGAAAAGGAAAATTTTGTCTAGTTATCTCATGGTGTTTTCGAACTTATTAAGGATTTTGTATGATATGCCTCCGTAGGTTCATCATTCAACTGCATGCTACCCGAGGCTCTAAAAGTTGCCGCGGTGGAACATGACCCTAATGGAC</genome_strand>
        <mrna_strand>TTCACAGAAGAATTGTTTGTGTATACATGCTCAAAGAAAGCTAAAAAGCTGCTGTCTTTGCAATCCTTTTTTACTAATGTCTATAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCAAGAGGCCGGTGGGCCTTGAGTGAACCTTAATTTCAGTAGTGAAAGGAAAATGACCACAAAACCAAAGAAAGGATGGAAATCAATTTCGTCTCTCAATTTGAAGACCAAATCAGCAGCACATTTTTGTTTGCTCCCCAAATCAAAGTCGGATCGATATGGTCCTGGCGACACACCTGTTTATCTCAACGTGTATGACTTGACTCCTATGAACGGCTATGTATATTGGGTTGGCCTTGGTATTTTTCATTCTGGTGTGGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATGGTGTAGAATATGCATTTGGAGCTCATGACTATTCAAGCAGTGGTGTCTTTGAAGTTGAACCACGACAATGCCCGGGGTTCAAGTTTAGGAAGTCCATATTCATTGGGGTTACAAAGTTGGATCCCTGTCAGGTTAGAGAGTTTATCGAACGTCAAGCTGCTAGCTATAATGGTGACACATATCATTTGATTTCGAAGAACTGCAACCATTTTTGCAACGATACATGCTACAAGCTCACCGGGAAAAAGATTCCAAAGTGGGTAAACCGACTTGCAAAATTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATCATTCAACTGCATGCTACCCGAGGCTCTAAAAGTTGCCGCGGTGGAACATGACCCCTATGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E570839" ref_strand="+" ref_description="SGN-E570839 [15485]">
      <seq>gaattgtttgtgtatacatgcttagagaaagctaaaaagctgctgtctttgcaatcttttttactaatgtctatatagatcaagaggcctgtgggccttgagtgaaccttaatttcagtagtgaaaggaaaatgaccacaaaaccaaagaaaggatggaaatcaatttcgtctctcaatttgaagaccaaatcagcagcacatttttgtttgctccccaaatcaaaatcagatcgatatggtcctggtgacacacctgtttatctcaatgtgtatgacttgactcctatgaatggctatgtatattgggttggccttggtatttttcattctggtgtggaagttcatggtgtagaatatgcatttggagctcatgactattcaagcagtggtgtctttgaagttgaaccacgacaatgcccagggttcaagtttagaaagtccatattccttggggttacaaagttggatccctgtcaggttagagagtttattgaacgtcaagctgctagctataatggtgacacatatcatttgatttcgaagaactgcaaccatttttgcaacgatacatgctacaagctcactgggaaaaagattccaaagtgggtaaaccgacttgcaaaattaggttcatcattcaactgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="-" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="39805" stop="34723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39505" g_stop="39429" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39428" i_stop="36810" i_length="2619">
            <donor d_prob="0.785" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36809" g_stop="36544" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="342" r_length="266" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36543" i_stop="35781" i_length="763">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.733" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35780" g_stop="35493" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="630" r_length="288" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35492" i_stop="35043" i_length="450">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35042" g_stop="35023" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="650" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="-" ref_id="SGN-E570839" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E570839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39505" e_stop="39429"/>
          <exon e_start="36809" e_stop="36544"/>
          <exon e_start="35780" e_stop="35493"/>
          <exon e_start="35042" e_stop="35023"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTGTTTGTGTATACATGCTCAAAGAAAGCTAAAAAGCTGCTGTCTTTGCAATCCTTTTTTACTAATGTCTATATGTAAGTCTTTCTTCTTCTTGAATTTTTGTTGTTGTTTCTTGAAAAAGCTTTCCCTTTGTTGTTGTTGTTGTGTGTAAAGATTGGATCTTTTTCACTTAATTCTTGGCTAAAGTTTGTGTTTGTTCAAGAATTGCTTTAAAATTTCAATCTTGCTGCAAGATCTGATAGTATAACTGGTATTTTCACAAGTTTTGATATGCTAATTTAGCCTGATTGCTTTGGTTTCCTTTTTTTCTTTCATTAGGTTTTCCATAAATATGCAAATTGTGTGTTGAATGAGAAATTTTTGGTGGTTTCCTTATGTGTGTATGGGGAAAATAGCATTTTAAGACATGGGTTTTGGATGAAAAGTTTGAAAGAATGAGTTTTTGTTGTAAAACCTTTGAATTTAAGTAGTTGAGTTAGAGAAATAGGTTGTGCTTTGAGGGGTAAAGTAGGAAATGTAATTAGCTTCGACGTGGCGGCGATTACATGTCTTTAGAGAGGTAGTAGTTGGTTTTTGTTGAATTAGTAGTAATTGATTCTGCTTGGCACATCTGGAGCAAAATAGAGTTATGTGTTTCGATGGATGTTGACAATTGCGTAATGATTGATATTTGATTCAATCTGTTTACGTTCCTTGCTTTTGACTTGGACTTCGAATCCTCTACCCCGAGGTGAGGTAAGGATGTTATTTAACTCTTTTTTGTTGGAAATAAGTAGGTAAGAGATGTTGTTATTAGTCTTTTGATGTCCTTTGTGAACGATCATTACTTTTTTGTTTTCGCATTTTCTATTTGACATCTATATTTAGCAGTTTGTTTGGTTTCTTGAATTTATATTCATCTTTTGAACCAGGATTTGTTCGCTATCCAAGAATGGATGTGAGCTTAAGGTTTCTTATAAAATTTACGTAGATCCTAAGCGTAAAGCATGTACATTTATGAGAAATGATTAATTAGGAAGTTAACATATTTTCTATTGGAACCATTAGCGAGATCGTTAGAGCTGAAGAAGAGTCAACTTAGTTTCCTTTTCACAACTGAGTTGAATTTGACTTTATGGTTCAAGGTAGTAATGGTTTGACAAGGGAATACGCAACCGCTATCCTTTGGGTGTGCGCATAGGAAAGTGTTTTCTTATGCGTATCTCTTCGTATTTATTGCTGCTAGATATTCAATTGTGCATATATGTTTCTAAATTAGCAAATTTATCCCTTATATTGGCCGATGAATAGATATTGTATTTATCCCTTGAAATGAACTTTGACTTTTTTTTAAAACTACAAGTAGATTAAAGAAAAAGACAATACTGGATGCACGCGACAGATTATAGTATACATTAGTGGTTCCCCACTCATACATATAGTAGACTTCTCTTTGAAGTTGAAAGAGACAGATATCCTATTTCTATTCTTTTCGTCCCTTTCATCATCTTTCTCCCTTCTGAAGATTCATTCTTATATTCCTTCTAGGAAATTTCCTTGGCATTGATTACCGACATTTTCCCCCTTCTGCCGAACACTTAATCTATTGTTGAACATTTTAAGGTTCGTTGAATACCGACATTTACCCCCTTCGGTCGAGCACTTAATCGATTATTGAAGATTTCAAGGTTGAGAAGTTAGAGTAGGGGCTATTTCACTAGGAAAGCTGCACAAGCAGATTACTCTATATTCTCAAAGGGTCAAACGGGGTATCATGGACCAGCTAACTTGATAAGTGAAATACGCTGTTATCAAAAGAACACTTCTATACCTTACTGCAAAAAGGAAATTGAGTTTCCATATTTCATGATCTAGTGTGAAGTTGGATAGAGAACGTAGTTTGGAAAGCAAGGCATATAATGCGGATGATGATCTCATGTTCATCAAAGTTTTTTTTTTGGAGGGACGGAGTAAAATGTCATCGAGCAAACGGTTTATCGTTTAGATCATCTCTCTGGTTCTTTACCTTCTTATTGAATGTATCAATAAATCTCTCATAAGCCTTATTCAGTTATAGTGCTAATCAACAACGCGTGCTCCATTGGGTTTTGCTGATGATCACGCTTCTTCTCAAGTCTCCCTACATTGTACTCAAAGTTGTTTAGATCAGGAAAGAAATATCACGTCAGTACAATGTCAGTGTAAGGCCAAAACTTTACCTGAATAGTTTAAAATTTTGTTTCCTCGCTATCGGTGCTAAGGCACGTGATATAGCTTAGTACAATAAACCAATTATGGTATAAAATGAGAACTCTAACTTGTAAAATCTGTAGGAAGCTAGTAATCCAATGGTCAACTAGTATGAGTTTTATTAGGTGACGGAAGTCATTTTTTTTGGGCTTGTTTTAGTGAAATGATATGTCTATAGTTGCGGAGATAAAGCACAGGTGTTGTAAAGCATTTCACCGATATTATTACATGCCTAACATTATCTAGTGCAGGATTTTCACATTCAGTAATACGATCATATTGAAATATTGCGATCAAACAGCCATGATATTGATCTTTCTGTGGTTCACTTCCTTATTTTCTCGTTCTCTGTTCGTTCTTTACTTTATTTTATTCTGAGTTTTCATTTTTTTACGAGTTTCATTCTTCGGGTTTCTGGATTCTTAAAGTTCCTGAAGTTTCCTTATGCTGCTTGGTTCATGCAGAGATCAAGAGGCCGGTGGGCCTTGAGTGAACCTTAATTTCAGTAGTGAAAGGAAAATGACCACAAAACCAAAGAAAGGATGGAAATCAATTTCGTCTCTCAATTTGAAGACCAAATCAGCAGCACATTTTTGTTTGCTCCCCAAATCAAAGTCGGATCGATATGGTCCTGGCGACACACCTGTTTATCTCAACGTGTATGACTTGACTCCTATGAACGGCTATGTATATTGGGTTGGCCTTGGTATTTTTCATTCTGGTGTGGAAGGTACAGTCTTGTTAGATTTTCCATCTTACCTTTTTTGTTATTCACGGCTAGTTGTTTGTCGATGTACACATGCGATATCCATTTTTTGATATCGATATGTTGCTTATATATTGCTTTTCCTAGTTCTGTTTGATCTAATATACTGCAGTATGTTTCATTACCCGATGAATTAGTTTGTCTATCTTGACTTTTGTTTTAGCTAATTAGCTGAAGTCTTGCGTTCAGATTCAGAACCGAAACTTGTTGGATATATCCATGTAGAATCCAACCTGTAAATGTGATTTATTTCATTCAAGAACAGATAGACGCATTTAATTAGTATCGATAGGCTAGCTTATAGTGGGAAATCTAATTCAAGTTTGAAGTTAATCGAACATAAGTCAACTTTGCTTTCCGTTCTTCGGTCTTAAACATGTAGACAACAGTCTTATATTTGAGGGATTGGAAAGTTATGGAGTGTGTAACAAATATATTAGTTTTCCACATTTTGGTTATTCCAAATTCGTTCATTTACGGAATATCATACAGAAGTCTTTTCTGCATCTATTTTTTACTTCTATTTTGGTTAATCCCCTTAAGAAAGCCTTATGTGGGACATTCCGACAGGGGAATCCCGAAGAAGTGTTAACGGTTGACCATTGCATGTTATAGTTTTATGAGGAAGTAGGAAGCCATATGTGAAACTTAACGTGGAGATTAGTTGTATTACTATTTGGCGCCTCATATTTTTGTACGTTCGGTGAAACTGACCCATATTTTACAGTTCATGGTGTAGAATATGCATTTGGAGCTCATGACTATTCAAGCAGTGGTGTCTTTGAAGTTGAACCACGACAATGCCCGGGGTTCAAGTTTAGGAAGTCCATATTCATTGGGGTTACAAAGTTGGATCCCTGTCAGGTTAGAGAGTTTATCGAACGTCAAGCTGCTAGCTATAATGGTGACACATATCATTTGATTTCGAAGAACTGCAACCATTTTTGCAACGATACATGCTACAAGCTCACCGGGAAAAAGATTCCAAAGTGGGTAAACCGACTTGCAAAATTAGGTAATCCTCTGTCATTTCACCTCTCTTTAGTTAACAATAACTACAACTAATAGTGCCTACAAGCATCTTTCTCTAGATTTATCTATGGACTCGGTCTCGGAGAACTAACCTCATAAATTAATGTGCTTCATAATGACAATCTGATTATGTTTGGTATGAAGGAGATCATTATATGGAAAATGTTTTTCTATTTTTCTATGTTTGGTTGGTCAAAATATTTCCAAAATCATTTTCTTCTGGAAAACAAGTTTCTTACAAATCATGATCTCTTCGTTGGAATAGGAATACAAGTTCCATAAATGACATTCCACGTTGATTGTCTTCTTCCTACCCCCGATCCCCCATCACGCCTCCTCCACCTGCATAAAAGTTCTGAAAAGGAAAATTTTGTCTAGTTATCTCATGGTGTTTTCGAACTTATTAAGGATTTTGTATGATATGCCTCCGTAGGTTCATCATTCAACTGCATG</genome_strand>
        <mrna_strand>GAATTGTTTGTGTATACATGCTTAGAGAAAGCTAAAAAGCTGCTGTCTTTGCAAT-CTTTTTTACTAATGTCTATAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCAAGAGGCCTGTGGGCCTTGAGTGAACCTTAATTTCAGTAGTGAAAGGAAAATGACCACAAAACCAAAGAAAGGATGGAAATCAATTTCGTCTCTCAATTTGAAGACCAAATCAGCAGCACATTTTTGTTTGCTCCCCAAATCAAAATCAGATCGATATGGTCCTGGTGACACACCTGTTTATCTCAATGTGTATGACTTGACTCCTATGAATGGCTATGTATATTGGGTTGGCCTTGGTATTTTTCATTCTGGTGTGGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATGGTGTAGAATATGCATTTGGAGCTCATGACTATTCAAGCAGTGGTGTCTTTGAAGTTGAACCACGACAATGCCCAGGGTTCAAGTTTAGAAAGTCCATATTCCTTGGGGTTACAAAGTTGGATCCCTGTCAGGTTAGAGAGTTTATTGAACGTCAAGCTGCTAGCTATAATGGTGACACATATCATTTGATTTCGAAGAACTGCAACCATTTTTGCAACGATACATGCTACAAGCTCACTGGGAAAAAGATTCCAAAGTGGGTAAACCGACTTGCAAAATTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATCATTCAACTGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328374" ref_strand="+" ref_description="SGN-E328374 [cTOC-21-I10]">
      <seq>ttttttgggtgtgttcgatatgaaagtaacatatttttcataaaacaactttttcatattggtacttaaacgaaaaatatataacaattttagataaacattatgatagtggatatgacgtagttgggatgagggtgaggagatagaacgcaatgaatgtgaaacaaactatttaaataatctttactggatttgatcgtatccgtaccttaacttctagctctggctctccctccctataacacaatcttttagttaaatatctctataacaatcatagttaagatagaattttattgttgggcttttttgcaacattttcttttagattcattactcagaaattcaagtggaataaacaacttatatttgctactccataaaaaaaagtctttttactacttgacttttaaccttttcttttttctctctatgttgaaaaatgagacttaaaatcatctcaagaatcaaataaataccacaaaatttcaactttttatgtgtgtaattttgcagctaaaattttacagaactccaaatggggactccaagttcaagaagtggtgcagcaattgtaataggtgttgttgttggttgtgtttttgccctctttttatccatccaccacctaaatctcatcctttgttttaatatgatgttttggtcgagtcatggtcgaatgaatccatggagtggatgaacatgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="-" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="49796" stop="47406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49496" g_stop="48834" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="663" r_length="663" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48833" i_stop="47751" i_length="1083">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47750" g_stop="47706" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="708" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="-" ref_id="SGN-E328374" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49496" e_stop="48834"/>
          <exon e_start="47750" e_stop="47706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTGGGTGTGTTCGATATGAAAGTAACATATTTTTCATAAAACAACTTTTTCATATTGGTACTTAAACGAAAAATATATAACAATTTTAGATAAACATTATGATAGTGGATATGACGTAGTTGGGATGAGGGTGAGGAGATAGAACGCAATGAATGTGAAACAAACTATTTAAATAATCTTTACTGGATTTGATCGTATCCGTACCTTAACTTCTAGCTCTGGCTCTCCCTCCCTATAACACAATCTTTTAGTTAAATATCTCTATAACAATCATAGTTAAGATAGAATTTTATTGTTGGGCTTTTTTGCAACATTTTCTTTTAGATTCATTACTCAGAAATTCAAGTGGAATAAACAACTTATATTTGCTACTCCATAAAAAAAAGTCTTTTTACTACTTGACTTTTAACCTTTTCTTTTTTCTCTCTATGTTGAAAAATGAGACTTAAAATCATCTCAAGAATCAAATAAATACCACAAAATTTCAACTTTTTATGTGTGTAATTTTGCAGCTAAAATTTTACAGAACTCCAAATGGGGACTCCAAGTTCAAGAAGTGGTGCAGCAATTGTAATAGGTGTTGTTGTTGGTTGTGTTTTTGCCCTCTTTTTATCCATCCACCACCTAAATCTCATCCTTTGTTTTAATATGATGTTTTGGTAAGTCACTCTACACTAATTTCTCTGTTATTCGATACACTAAGTTCTCGTTATACGTGGAATTTGAGAAAGAGTATGACCATAAGGGTCTATTGTACCTTATTATGTAAGAAACCGTTTTCACAACTCGAAACAAGTTTTTCTTTTGACCATGTTCTTTTCATGTCTTTTAATTATTGTGAGTTATAGTGTTTTTCTCTTTGTTTTTAAATATGTAAATTTATCCTTCGGGATGTCCCGTGTTTTGCCTTTGGGACTTTCAAGTTGGAAATTCCTTGCCAACGAAAGCAAGGGATTTGCCTTCTGGGTTGAGCTAGGTGTGCTCCTATAGCATAGGAGCAGAAGTTTTACCTTGTGCGCATCCAAAGGGTAGCGGCTACAGAACTTTGACTCTCGAAATCTAACTAGTGTCACATAACATAAACTGGGATAGATGTTGGAGGGAGTGTTTATTTTACATCAGATGCTTATTATTATCTCCTTTTTTTGTTGTTGAGGTGGGATATGGGATGCAGAGTTACAATAAGAGACACATTATTGAGTATTGTAGTGAAATTGGTCTAAGTAGAGTGGATTAGATATAGATGATAAGTATAATCGAATCTGAGTCGTTTAGGTTGAGGTCTAGTTGATCGATTGATTCATGCATTGATATGTGATTAGGTGTCGACAGTAAGAGTTGAGGAGATTTTCGTTATGATACTATCTCGAGCAATGGTAAAGTTGTCTTAATATAACCTTATAGGGTTTGGTTTCGAGATATTGAATCAGCCAGTAATGCTTGTATTAGCATTGTACCTTGTTAGGGCGCGGACCTTCCCTGGCTCCTTGTGTGAGCTTGGGATGATTCATCCACCGAGCTATCTTTTTTATTGACGGTGTATGCATTCAGCCCCGTTCTCATTCTCTGAAAGATAGGGCATTTAGGCATTATCTGTATATTGCTACATATTGGCGATAAACGCTCCGTGACTAGTGTGTTTGCTACATGTGACATTTGGTATAACGGCCAAAATGTCGTTTGATCAGTGTTGAAGTCTTCTCTATGTATGTACGTTTTAACTTGTGAGAACTAATTTATAGGTCGAGTCATGGTCGAATGAATCCATGGAGTGGATGAACATGTTG</genome_strand>
        <mrna_strand>TTTTTTGGGTGTGTTCGATATGAAAGTAACATATTTTTCATAAAACAACTTTTTCATATTGGTACTTAAACGAAAAATATATAACAATTTTAGATAAACATTATGATAGTGGATATGACGTAGTTGGGATGAGGGTGAGGAGATAGAACGCAATGAATGTGAAACAAACTATTTAAATAATCTTTACTGGATTTGATCGTATCCGTACCTTAACTTCTAGCTCTGGCTCTCCCTCCCTATAACACAATCTTTTAGTTAAATATCTCTATAACAATCATAGTTAAGATAGAATTTTATTGTTGGGCTTTTTTGCAACATTTTCTTTTAGATTCATTACTCAGAAATTCAAGTGGAATAAACAACTTATATTTGCTACTCCATAAAAAAAAGTCTTTTTACTACTTGACTTTTAACCTTTTCTTTTTTCTCTCTATGTTGAAAAATGAGACTTAAAATCATCTCAAGAATCAAATAAATACCACAAAATTTCAACTTTTTATGTGTGTAATTTTGCAGCTAAAATTTTACAGAACTCCAAATGGGGACTCCAAGTTCAAGAAGTGGTGCAGCAATTGTAATAGGTGTTGTTGTTGGTTGTGTTTTTGCCCTCTTTTTATCCATCCACCACCTAAATCTCATCCTTTGTTTTAATATGATGTTTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAGTCATGGTCGAATGAATCCATGGAGTGGATGAACATGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E687933" ref_strand="+" ref_description="SGN-E687933 [T3_tus_81_L01]">
      <seq>gttttttgggcgtgttcgatatgaaagtaacatatttttcataaaacaactttttcatattggtacttaaacgaaaaatatataacaattttagataaacattatgatagtggatatgacgtagttgggatgagggtgaggagatagaacgcaatgaatgtgaaacaaactatttaaataatctttactggatttgatcgtatccgtaccttaacttctagctctggctctccctccctataacacaatcttttagttaaatatctctataacaatcatagttaagatagaattttattgttgggcttttttgcaacattttcttttagattcattactcagaaattcaagtggaataaacaacttatatttgctactccataaaaaaaagtctttttactacttgacttttaaccttttcttttttctctctatgttgaaaaatgagacttaaaatcatctcaagaatcaaataaataccacaaaatttcaactttttatgtgtgtaattttgcagctaaaattttacagaactccaaatggggactccaagttcaagaagtggtgcagcaattgtaataggtgttgttgttggttgtgtttttgccctctttttatccatccaccacctaaatctcatcctttgttttaaatatgatgttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="-" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="49797" stop="48534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49497" g_stop="48834" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="665" r_length="665" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="-" ref_id="SGN-E687933" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E687933" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49497" e_stop="48834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTTGGGTGTGTTCGATATGAAAGTAACATATTTTTCATAAAACAACTTTTTCATATTGGTACTTAAACGAAAAATATATAACAATTTTAGATAAACATTATGATAGTGGATATGACGTAGTTGGGATGAGGGTGAGGAGATAGAACGCAATGAATGTGAAACAAACTATTTAAATAATCTTTACTGGATTTGATCGTATCCGTACCTTAACTTCTAGCTCTGGCTCTCCCTCCCTATAACACAATCTTTTAGTTAAATATCTCTATAACAATCATAGTTAAGATAGAATTTTATTGTTGGGCTTTTTTGCAACATTTTCTTTTAGATTCATTACTCAGAAATTCAAGTGGAATAAACAACTTATATTTGCTACTCCATAAAAAAAAGTCTTTTTACTACTTGACTTTTAACCTTTTCTTTTTTCTCTCTATGTTGAAAAATGAGACTTAAAATCATCTCAAGAATCAAATAAATACCACAAAATTTCAACTTTTTATGTGTGTAATTTTGCAGCTAAAATTTTACAGAACTCCAAATGGGGACTCCAAGTTCAAGAAGTGGTGCAGCAATTGTAATAGGTGTTGTTGTTGGTTGTGTTTTTGCCCTCTTTTTATCCATCCACCACCTAAATCTCATCCTTTGTTTT-AATATGATGTTTTG</genome_strand>
        <mrna_strand>GTTTTTTGGGCGTGTTCGATATGAAAGTAACATATTTTTCATAAAACAACTTTTTCATATTGGTACTTAAACGAAAAATATATAACAATTTTAGATAAACATTATGATAGTGGATATGACGTAGTTGGGATGAGGGTGAGGAGATAGAACGCAATGAATGTGAAACAAACTATTTAAATAATCTTTACTGGATTTGATCGTATCCGTACCTTAACTTCTAGCTCTGGCTCTCCCTCCCTATAACACAATCTTTTAGTTAAATATCTCTATAACAATCATAGTTAAGATAGAATTTTATTGTTGGGCTTTTTTGCAACATTTTCTTTTAGATTCATTACTCAGAAATTCAAGTGGAATAAACAACTTATATTTGCTACTCCATAAAAAAAAGTCTTTTTACTACTTGACTTTTAACCTTTTCTTTTTTCTCTCTATGTTGAAAAATGAGACTTAAAATCATCTCAAGAATCAAATAAATACCACAAAATTTCAACTTTTTATGTGTGTAATTTTGCAGCTAAAATTTTACAGAACTCCAAATGGGGACTCCAAGTTCAAGAAGTGGTGCAGCAATTGTAATAGGTGTTGTTGTTGGTTGTGTTTTTGCCCTCTTTTTATCCATCCACCACCTAAATCTCATCCTTTGTTTTAAATATGATGTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357800" ref_strand="+" ref_description="SGN-E357800 [cTOS-24-M11]">
      <seq>ttcggtctacagcctacagcctacaggttttaagctccatttgatggggatgtcaaatctttgcttatatcgtgtgaactgtctcgaagatcacttttacttctgatgtactagcttcttggcaatttacctcctctttcccactcaatgcattacacacacaagcgaagaaggtagatggcaaaccacttcctccctctctccctccctcccgttagcggaaagatcatatgagtgctgatcatgtatatggaatagatgtagacagaaaagtgcttgatttaggttttttctttctggagattgttggtttcccatagaattgctagttaggacatacagttacttgcagcattaagctttcttcaattcttggaaaccaaattctgttatctttttccagtgtaatagtattcttggacatgattttcccactggctgtaaataaatgagtatttctcctttgttccctaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="-" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="50683" stop="49611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50383" g_stop="49907" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="-" ref_id="SGN-E357800" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50383" e_stop="49907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGGTCTACAGCCTACAGCCTACAGGTTTTAAGCTCCATTTGATGGGGATGTCAAATCTTTGCTTATATCGTGTGAACTGTCTCGAAGATCACTTTTACTTCTGATGTACTAGCTTCTTGGCAATTTACCTCCTCTTTCCCACTCAATGCATTACACACACAAGCGAAGAAGGTAGATGGCAAACCACTTCCTCCCTCTCTCCCTCCCTCCCGTTAGCGGAAAGATCATATGAGTGCTGATCATGTATATGGAATAGATGTAGACAGAAAAGTGCTTGATTTAGGTTTTTTCTTTCTGGAGATTGTTGGTTTCCCATAGAATTGCTAGTTAGGACATACAGTTACTTGCAGCATTAAGCTTTCTTCAATTCTTGGAAACCAAATTCTGTTATCTTTTTCCAGTGTAATAGTATTCTTGGACATGATTTTCCCACTGGCTGTAAATAAATGAGTATTTCTCCTTTGTTCCCTATGTT</genome_strand>
        <mrna_strand>TTCGGTCTACAGCCTACAGCCTACAGGTTTTAAGCTCCATTTGATGGGGATGTCAAATCTTTGCTTATATCGTGTGAACTGTCTCGAAGATCACTTTTACTTCTGATGTACTAGCTTCTTGGCAATTTACCTCCTCTTTCCCACTCAATGCATTACACACACAAGCGAAGAAGGTAGATGGCAAACCACTTCCTCCCTCTCTCCCTCCCTCCCGTTAGCGGAAAGATCATATGAGTGCTGATCATGTATATGGAATAGATGTAGACAGAAAAGTGCTTGATTTAGGTTTTTTCTTTCTGGAGATTGTTGGTTTCCCATAGAATTGCTAGTTAGGACATACAGTTACTTGCAGCATTAAGCTTTCTTCAATTCTTGGAAACCAAATTCTGTTATCTTTTTCCAGTGTAATAGTATTCTTGGACATGATTTTCCCACTGGCTGTAAATAAATGAGTATTTCTCCTTTGTTCCCTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E435049" ref_strand="+" ref_description="SGN-E435049 [STM-60-L20]">
      <seq>cctcaactgcctgtataattgccctcacagatcagggtctgcatgctgttaatttaggagatagcggattcatagtggtcagagatggatctactgttttcagatcccctgtgcagcagcatgatttcaatttcacatatcaactagagagtggtaatgctggtgacttaccaagttctggagaggtcttcaaaataccagtggcacaaggagatgttataataactggtactgatgggttgtttgacaatttgtacaacaatgatattaatgcaattgttgttcatgcaacgagagctggcttagggccacaggtgacagctcagaagatagctgcattagctcggcaaagagcacaggataaaaacaggcagacccctttctcttctgcagctcaagaagctgggttccgttactatggcgggaagctggacgatataactgtggttgtgtcctacataagcagtgacagaaatgaaagatccaacagcttaaagatgtagttgagagctgagctttgatttcttgctttggatcgcttggctttggtctacagcctacaggttttaagctccatttgaagagggtcaaatctttgcttatatcgtgtgaaatgtctcgaagatcacttttacttctgatgcactagcttcttggcaatttacctcctcttttccactccatgctttacacacacccaagcgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="-" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="52531" stop="49922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52231" g_stop="52197" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52196" i_stop="52110" i_length="87">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52109" g_stop="51960" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="185" r_length="150" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51959" i_stop="51298" i_length="662">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51297" g_stop="51007" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="476" r_length="291" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51006" i_stop="50446" i_length="561">
            <donor d_prob="0.586" d_score="0.96"/>
            <acceptor a_prob="0.747" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50445" g_stop="50215" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="706" r_length="230" r_score="0.840"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="-" ref_id="SGN-E435049" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E435049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52231" e_stop="52197"/>
          <exon e_start="52109" e_stop="51960"/>
          <exon e_start="51297" e_stop="51007"/>
          <exon e_start="50445" e_stop="50215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCAACTGCCTGTATAATTGCCCTCACAGATCAGGTACATGTGCAATTCTCAGCCATTTTGGAGTATGTATACTTTTGAGTTTGGCCATTGTTAGACTTATCATTTTTCTTCTCTTCCCAGGGTCTGCATGCTATTAATTTAGGAGATAGCGGATTCATTGTGGTCAGAGATGGATCTACTGTTTTCAGATCCCCTGTGCAGCAGCATGATTTCAATTTCACGTATCAACTAGAGAGTGGTAATGCTGGTGACTTACCAAGTTCTGGAGAGGTTAGTAATGCCCCATTTTCTATATGTAGAATTTGGTTTAGAGCTTATGTTTATCGGTGTCTGGAAAATTTATCATACTCAAATCAAAGAGTGTTGCCTTTATTCAGTCTTCTGTTACAATATTTCTATGTTATTAGGAGACAGTATTTTGGGTTCAATGTTTAAAATGGTTCCTGTACAGTTCCTCGTAATTACTTTTTTTAGTTAAACATAATATGGAGAGATGCATTTCTTCATGGTTAGTCCTCATAGATGTGAATCATGAGAAGTGTACCATGAATCCATGATTTAGACATATTTTTTCTTTTTCTAGTATTAGCTCAAATTCCCCTCATGGTTCTTGTCCTGTCTTTCTTTTTTCTAGTTGTGACAAATGTCATTTCTTTTCAGTTATCGATCAGAACTTCTTGGTAATGTCTATGGCATCCTGTCTTGTGATCACTATATTTCTTTTAAAAGGCATTCATCACCCTCCTAAAAAAAGAAGAGAAAATCCGTTGCTCATTCTTTTATCAGTTGAGCAGAAATCGCTGTATCAACTGCATTGTGTAGTTTGGTTCATGACTCCAATTTTTCCTTCAACTGGTTCACTGTGGATGCCTCCAATTCAGTTAGTTATAGCACAATTCTCTCTTAATCTGAATGACTTGCCTGTGCTGCAGGTCTTCAAAATACCAGTGGCACAAGGAGATGTTATAATAGCTGGTACTGATGGGTTGTTTGACAATTTGTACAACAATGATATTAATGCAATCGTCGTTCATGCAACGAGAGCTGGCTTAGGGCCACAGGTGACAGCTCAGAAGATAGCTGCATTAGCTCGGCAAAGAGCACAGGATAAAAACAGGCAGACCCCTTTCTCTTCTGCAGCTCAAGAAGCTGGGTTCCGTTACTATGGAGGGAAGCTGGACGATATAACTGTGGTTGTATCCTACATAAGCAGTGACAGAAACGTATGAGCACACTCTGTATTTTCGCCACCTCCCCTCCTTTCTTTATTTGCTTACATTTATAAATTTTTTCTTGCTGGACACGACAGGCATCACTTCACTTCTTTGGATGTCCTAAATTGTTCTATCATACTTCTACACAAAAAGGCTGTGCCAAACCTTTCTAACACACACAGACTCCTTTATTTCTCTCATAAATTTAAACTTTACTACCTGTGAAGAGTGCTGCATTTTGTTTCAATTATCTAAATCTCTGTTTATAAATATCTCTTCATTCTTATGTTGCGCCTACTCTTCATTTAAGTTTGTTTTTCTCTCATCTTTTAATGGTTTTCAATACATATAGAAAGTCCTAGTTCTTACTGTTTCATATCAGCGTTTTACAAAAACTCCGATCATGTTGACTTATCATTCAACACGGCCTCACTTATCAAAGCATTGTTATGAAGCACCTTTTCAACTAGTTCTGTGTTGTATTTCAAACAAAGTAGAAGCTGTAGCTTACTCTCGTGTACGTTTTATAGAAAATGGGGACTGATGCCTCTCTTGTCCGATGATGTGCAGGAAAGATCTAACAGCTTAAAGATGTAGTTAAGAGCT-TTCGTTTCTTGCTTTGGATCGCCTGCTTCGGTCTACAGCCTACAGCCTACAGGTTTTAAGCTCCATTTGATGGGGATGTCAAATCTTTGCTTATATCGTGTGAACTGTCTCGAAGATCACTTTTACTTCTGATGTACTAGCTTCTTGGCAATTTACCTCCTCTTTCCCACTCAATGCATTACACACA--CAAGCGAA</genome_strand>
        <mrna_strand>CCTCAACTGCCTGTATAATTGCCCTCACAGATCAG.......................................................................................GGTCTGCATGCTGTTAATTTAGGAGATAGCGGATTCATAGTGGTCAGAGATGGATCTACTGTTTTCAGATCCCCTGTGCAGCAGCATGATTTCAATTTCACATATCAACTAGAGAGTGGTAATGCTGGTGACTTACCAAGTTCTGGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTCAAAATACCAGTGGCACAAGGAGATGTTATAATAACTGGTACTGATGGGTTGTTTGACAATTTGTACAACAATGATATTAATGCAATTGTTGTTCATGCAACGAGAGCTGGCTTAGGGCCACAGGTGACAGCTCAGAAGATAGCTGCATTAGCTCGGCAAAGAGCACAGGATAAAAACAGGCAGACCCCTTTCTCTTCTGCAGCTCAAGAAGCTGGGTTCCGTTACTATGGCGGGAAGCTGGACGATATAACTGTGGTTGTGTCCTACATAAGCAGTGACAGAAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGATCCAACAGCTTAAAGATGTAGTTGAGAGCTGAGCTTTGATTTCTTGCTTTGGATCGCTT-GG-CTTTGGTCTACAGCCTACAGGTTTTAAGCTCCATTTGAAGAGG--GTCAAATCTTTGCTTATATCGTGTGAAATGTCTCGAAGATCACTTTTACTTCTGATGCACTAGCTTCTTGGCAATTTACCTCCTCTTTTCCACTCCATGCTTTACACACACCCAAGCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E408893" ref_strand="+" ref_description="SGN-E408893 [PPI-12-D15]">
      <seq>cctcaactgcctgtataattgccctcacagatcagggtctgcatgctgttaatttaggagatagcggattcatagtggtcagagatggatctactgttttcagatcccctgtgcagcagcatgatttcaatttcacatatcaactagagagtggtaatgctggtgacttaccaagttctggagaggtcttcaaaataccagtggcacaaggagatgttataataactggtactgatgggttgtttgacaatttgtacaacaatgatattaatgcaattgttgttcatgcaacgagagctggcttagggccacaggtgacagctcagaagatagctgcattagctcggcaaagagcacaggataaaaacaggcagacccctttctcttctgcagctcaagaagctgggttccgttactatggcgggaagctggacgatataactgtggttgtgtcctacataagcagtgacagaaatgaaagatccaacagcttnaagatgtagttgagagctgagctttgattttcttgcttggatcgcttggctttggtctacagcctacaggttttaagctccattttgagagggtcaaatctttgcttatatcgtgtgaaatgtctcgaagatcacttttacttctgatgcactagcttctttggcatttactcctctttccactccatgcttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="-" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="52531" stop="49929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52231" g_stop="52197" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52196" i_stop="52110" i_length="87">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52109" g_stop="51960" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="185" r_length="150" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51959" i_stop="51298" i_length="662">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51297" g_stop="51007" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="476" r_length="291" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51006" i_stop="50446" i_length="561">
            <donor d_prob="0.586" d_score="0.96"/>
            <acceptor a_prob="0.747" a_score="0.73"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50445" g_stop="50229" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="688" r_length="212" r_score="0.816"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="-" ref_id="SGN-E408893" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E408893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52231" e_stop="52197"/>
          <exon e_start="52109" e_stop="51960"/>
          <exon e_start="51297" e_stop="51007"/>
          <exon e_start="50445" e_stop="50229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCAACTGCCTGTATAATTGCCCTCACAGATCAGGTACATGTGCAATTCTCAGCCATTTTGGAGTATGTATACTTTTGAGTTTGGCCATTGTTAGACTTATCATTTTTCTTCTCTTCCCAGGGTCTGCATGCTATTAATTTAGGAGATAGCGGATTCATTGTGGTCAGAGATGGATCTACTGTTTTCAGATCCCCTGTGCAGCAGCATGATTTCAATTTCACGTATCAACTAGAGAGTGGTAATGCTGGTGACTTACCAAGTTCTGGAGAGGTTAGTAATGCCCCATTTTCTATATGTAGAATTTGGTTTAGAGCTTATGTTTATCGGTGTCTGGAAAATTTATCATACTCAAATCAAAGAGTGTTGCCTTTATTCAGTCTTCTGTTACAATATTTCTATGTTATTAGGAGACAGTATTTTGGGTTCAATGTTTAAAATGGTTCCTGTACAGTTCCTCGTAATTACTTTTTTTAGTTAAACATAATATGGAGAGATGCATTTCTTCATGGTTAGTCCTCATAGATGTGAATCATGAGAAGTGTACCATGAATCCATGATTTAGACATATTTTTTCTTTTTCTAGTATTAGCTCAAATTCCCCTCATGGTTCTTGTCCTGTCTTTCTTTTTTCTAGTTGTGACAAATGTCATTTCTTTTCAGTTATCGATCAGAACTTCTTGGTAATGTCTATGGCATCCTGTCTTGTGATCACTATATTTCTTTTAAAAGGCATTCATCACCCTCCTAAAAAAAGAAGAGAAAATCCGTTGCTCATTCTTTTATCAGTTGAGCAGAAATCGCTGTATCAACTGCATTGTGTAGTTTGGTTCATGACTCCAATTTTTCCTTCAACTGGTTCACTGTGGATGCCTCCAATTCAGTTAGTTATAGCACAATTCTCTCTTAATCTGAATGACTTGCCTGTGCTGCAGGTCTTCAAAATACCAGTGGCACAAGGAGATGTTATAATAGCTGGTACTGATGGGTTGTTTGACAATTTGTACAACAATGATATTAATGCAATCGTCGTTCATGCAACGAGAGCTGGCTTAGGGCCACAGGTGACAGCTCAGAAGATAGCTGCATTAGCTCGGCAAAGAGCACAGGATAAAAACAGGCAGACCCCTTTCTCTTCTGCAGCTCAAGAAGCTGGGTTCCGTTACTATGGAGGGAAGCTGGACGATATAACTGTGGTTGTATCCTACATAAGCAGTGACAGAAACGTATGAGCACACTCTGTATTTTCGCCACCTCCCCTCCTTTCTTTATTTGCTTACATTTATAAATTTTTTCTTGCTGGACACGACAGGCATCACTTCACTTCTTTGGATGTCCTAAATTGTTCTATCATACTTCTACACAAAAAGGCTGTGCCAAACCTTTCTAACACACACAGACTCCTTTATTTCTCTCATAAATTTAAACTTTACTACCTGTGAAGAGTGCTGCATTTTGTTTCAATTATCTAAATCTCTGTTTATAAATATCTCTTCATTCTTATGTTGCGCCTACTCTTCATTTAAGTTTGTTTTTCTCTCATCTTTTAATGGTTTTCAATACATATAGAAAGTCCTAGTTCTTACTGTTTCATATCAGCGTTTTACAAAAACTCCGATCATGTTGACTTATCATTCAACACGGCCTCACTTATCAAAGCATTGTTATGAAGCACCTTTTCAACTAGTTCTGTGTTGTATTTCAAACAAAGTAGAAGCTGTAGCTTACTCTCGTGTACGTTTTATAGAAAATGGGGACTGATGCCTCTCTTGTCCGATGATGTGCAGGAAAGATCTAACAGCTTAAAGATGTAGTTAAGAGCT-TTCGTTTCTTGCTTTGGATCGCCTGCTTCGGTCTACAGCCTACAGCCTACAGGTTTTAAGCTCCATTTGATGGGGATGTCAAATCTTTGCTTATATCGTGTGAACTGTCTCGAAGATCACTTTTACTTCTGATGTACTAGCTTCTTGGCAATTTACCTCCTCTTTCCCACTCAATGCATTA</genome_strand>
        <mrna_strand>CCTCAACTGCCTGTATAATTGCCCTCACAGATCAG.......................................................................................GGTCTGCATGCTGTTAATTTAGGAGATAGCGGATTCATAGTGGTCAGAGATGGATCTACTGTTTTCAGATCCCCTGTGCAGCAGCATGATTTCAATTTCACATATCAACTAGAGAGTGGTAATGCTGGTGACTTACCAAGTTCTGGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTCAAAATACCAGTGGCACAAGGAGATGTTATAATAACTGGTACTGATGGGTTGTTTGACAATTTGTACAACAATGATATTAATGCAATTGTTGTTCATGCAACGAGAGCTGGCTTAGGGCCACAGGTGACAGCTCAGAAGATAGCTGCATTAGCTCGGCAAAGAGCACAGGATAAAAACAGGCAGACCCCTTTCTCTTCTGCAGCTCAAGAAGCTGGGTTCCGTTACTATGGCGGGAAGCTGGACGATATAACTGTGGTTGTGTCCTACATAAGCAGTGACAGAAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGATCCAACAGCTTNAAGATGTAGTTGAGAGCTGAGCTTTGATTTTCTTGCTTGGATCGCTT-GG-CTTTGGTCTACAGCCTACAGGTTTTAAGCTCCATTT--TGAGAGGGTCAAATCTTTGCTTATATCGTGTGAAATGTCTCGAAGATCACTTTTACTTCTGATGCACTAGCTTCTTTGGCATTTA-CTCCTCTTT-CCACTCCATGCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268845" ref_strand="+" ref_description="SGN-E268845 [cLEM-4-H22]">
      <seq>cagagtcctcgataaagcttatacatgcacaaaagccaaaggttcctcaactgcctgtataattgccctcacagatcagggtctgcatgctattaatttaggagatagcggattcattgtggtcagagatggatctactgttttcagatcccctgtgcagcagcatgatttcaatttcacgtatcaactagagagtggtaatgctggtgacttaccaagttctggagaggtcttcaaaataccagtggcacaaggagatgttataatagctggtactgatgggttgtttgacaatttgtacaacaatgatattaatgcaatcgtcgttcatgcaacgagagctggcttagggccacaggtgacagctcagaagatagctgcattagctcggcaaagagcacaggataaaaacaggcagacccctttctcttctgcagctcaagaagctgggttccgttactatggagggaagctggacgatataactgtggttgtatcctacataagcagtgacagaaacgaaagatctaacagcttaaagatgtagttaagagctttcgtttcttgctttgtatcgcctgcttcggtctacagcctacagcctacaggttttaagctccatttgatggggatgtcaaatctttgcttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="-" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="52575" stop="50015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52275" g_stop="52197" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52196" i_stop="52110" i_length="87">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52109" g_stop="51960" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="229" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51959" i_stop="51298" i_length="662">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51297" g_stop="51007" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="520" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51006" i_stop="50446" i_length="561">
            <donor d_prob="0.586" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50445" g_stop="50315" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="651" r_length="131" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="-" ref_id="SGN-E268845" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52275" e_stop="52197"/>
          <exon e_start="52109" e_stop="51960"/>
          <exon e_start="51297" e_stop="51007"/>
          <exon e_start="50445" e_stop="50315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGTCCTCGATAAAGCTTATACATGCACAAAAGCCAAAGGTTCCTCAACTGCCTGTATAATTGCCCTCACAGATCAGGTACATGTGCAATTCTCAGCCATTTTGGAGTATGTATACTTTTGAGTTTGGCCATTGTTAGACTTATCATTTTTCTTCTCTTCCCAGGGTCTGCATGCTATTAATTTAGGAGATAGCGGATTCATTGTGGTCAGAGATGGATCTACTGTTTTCAGATCCCCTGTGCAGCAGCATGATTTCAATTTCACGTATCAACTAGAGAGTGGTAATGCTGGTGACTTACCAAGTTCTGGAGAGGTTAGTAATGCCCCATTTTCTATATGTAGAATTTGGTTTAGAGCTTATGTTTATCGGTGTCTGGAAAATTTATCATACTCAAATCAAAGAGTGTTGCCTTTATTCAGTCTTCTGTTACAATATTTCTATGTTATTAGGAGACAGTATTTTGGGTTCAATGTTTAAAATGGTTCCTGTACAGTTCCTCGTAATTACTTTTTTTAGTTAAACATAATATGGAGAGATGCATTTCTTCATGGTTAGTCCTCATAGATGTGAATCATGAGAAGTGTACCATGAATCCATGATTTAGACATATTTTTTCTTTTTCTAGTATTAGCTCAAATTCCCCTCATGGTTCTTGTCCTGTCTTTCTTTTTTCTAGTTGTGACAAATGTCATTTCTTTTCAGTTATCGATCAGAACTTCTTGGTAATGTCTATGGCATCCTGTCTTGTGATCACTATATTTCTTTTAAAAGGCATTCATCACCCTCCTAAAAAAAGAAGAGAAAATCCGTTGCTCATTCTTTTATCAGTTGAGCAGAAATCGCTGTATCAACTGCATTGTGTAGTTTGGTTCATGACTCCAATTTTTCCTTCAACTGGTTCACTGTGGATGCCTCCAATTCAGTTAGTTATAGCACAATTCTCTCTTAATCTGAATGACTTGCCTGTGCTGCAGGTCTTCAAAATACCAGTGGCACAAGGAGATGTTATAATAGCTGGTACTGATGGGTTGTTTGACAATTTGTACAACAATGATATTAATGCAATCGTCGTTCATGCAACGAGAGCTGGCTTAGGGCCACAGGTGACAGCTCAGAAGATAGCTGCATTAGCTCGGCAAAGAGCACAGGATAAAAACAGGCAGACCCCTTTCTCTTCTGCAGCTCAAGAAGCTGGGTTCCGTTACTATGGAGGGAAGCTGGACGATATAACTGTGGTTGTATCCTACATAAGCAGTGACAGAAACGTATGAGCACACTCTGTATTTTCGCCACCTCCCCTCCTTTCTTTATTTGCTTACATTTATAAATTTTTTCTTGCTGGACACGACAGGCATCACTTCACTTCTTTGGATGTCCTAAATTGTTCTATCATACTTCTACACAAAAAGGCTGTGCCAAACCTTTCTAACACACACAGACTCCTTTATTTCTCTCATAAATTTAAACTTTACTACCTGTGAAGAGTGCTGCATTTTGTTTCAATTATCTAAATCTCTGTTTATAAATATCTCTTCATTCTTATGTTGCGCCTACTCTTCATTTAAGTTTGTTTTTCTCTCATCTTTTAATGGTTTTCAATACATATAGAAAGTCCTAGTTCTTACTGTTTCATATCAGCGTTTTACAAAAACTCCGATCATGTTGACTTATCATTCAACACGGCCTCACTTATCAAAGCATTGTTATGAAGCACCTTTTCAACTAGTTCTGTGTTGTATTTCAAACAAAGTAGAAGCTGTAGCTTACTCTCGTGTACGTTTTATAGAAAATGGGGACTGATGCCTCTCTTGTCCGATGATGTGCAGGAAAGATCTAACAGCTTAAAGATGTAGTTAAGAGCTTTCGTTTCTTGCTTTGGATCGCCTGCTTCGGTCTACAGCCTACAGCCTACAGGTTTTAAGCTCCATTTGATGGGGATGTCAAATCTTTGCTTATA</genome_strand>
        <mrna_strand>CAGAGTCCTCGATAAAGCTTATACATGCACAAAAGCCAAAGGTTCCTCAACTGCCTGTATAATTGCCCTCACAGATCAG.......................................................................................GGTCTGCATGCTATTAATTTAGGAGATAGCGGATTCATTGTGGTCAGAGATGGATCTACTGTTTTCAGATCCCCTGTGCAGCAGCATGATTTCAATTTCACGTATCAACTAGAGAGTGGTAATGCTGGTGACTTACCAAGTTCTGGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTCAAAATACCAGTGGCACAAGGAGATGTTATAATAGCTGGTACTGATGGGTTGTTTGACAATTTGTACAACAATGATATTAATGCAATCGTCGTTCATGCAACGAGAGCTGGCTTAGGGCCACAGGTGACAGCTCAGAAGATAGCTGCATTAGCTCGGCAAAGAGCACAGGATAAAAACAGGCAGACCCCTTTCTCTTCTGCAGCTCAAGAAGCTGGGTTCCGTTACTATGGAGGGAAGCTGGACGATATAACTGTGGTTGTATCCTACATAAGCAGTGACAGAAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGATCTAACAGCTTAAAGATGTAGTTAAGAGCTTTCGTTTCTTGCTTTGTATCGCCTGCTTCGGTCTACAGCCTACAGCCTACAGGTTTTAAGCTCCATTTGATGGGGATGTCAAATCTTTGCTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371478" ref_strand="+" ref_description="SGN-E371478 [TUS-29-B2]">
      <seq>cagagtcctcgataaagcttatacatgcacaaaagccaaaggttcctcaactgcctgtataattgccctcacagatcagggtctgcatgctattaatttaggagatagcggattcattgtggtcagagatggatctactgttttcagatcccctgtgcagcagcatgatttcaatttcacgtatcaactagagagtggtaatgctggtgacttaccaagttctggagaggtcttcaaaataccagtggcacaaggagatgttataatagctggtactgatgggttgtttgacaatttgtacaacaatgatattaatgcaatcgtcgttcatgcaacgagagctggcttagggccacaggtgacagctcagaagatagctgcattagctcggcaaagagcacaggataaaaacaggcagacccctttctcttctgcagctcaagaagctgggttccgttactatggagggaagctggacgatataactgtggttgtatcctacataagcagtgacagaaacgaaagatctaacagcttaaagatgtagttaagagctttcgtttcttgctttgtatcgcctgcttcggtctacagcctacagcctacaggttttaagctccatttgatggggatgtcaaatctttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="-" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="52575" stop="50020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52275" g_stop="52197" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52196" i_stop="52110" i_length="87">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52109" g_stop="51960" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="229" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51959" i_stop="51298" i_length="662">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51297" g_stop="51007" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="520" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51006" i_stop="50446" i_length="561">
            <donor d_prob="0.586" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50445" g_stop="50320" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="646" r_length="126" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="-" ref_id="SGN-E371478" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52275" e_stop="52197"/>
          <exon e_start="52109" e_stop="51960"/>
          <exon e_start="51297" e_stop="51007"/>
          <exon e_start="50445" e_stop="50320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGTCCTCGATAAAGCTTATACATGCACAAAAGCCAAAGGTTCCTCAACTGCCTGTATAATTGCCCTCACAGATCAGGTACATGTGCAATTCTCAGCCATTTTGGAGTATGTATACTTTTGAGTTTGGCCATTGTTAGACTTATCATTTTTCTTCTCTTCCCAGGGTCTGCATGCTATTAATTTAGGAGATAGCGGATTCATTGTGGTCAGAGATGGATCTACTGTTTTCAGATCCCCTGTGCAGCAGCATGATTTCAATTTCACGTATCAACTAGAGAGTGGTAATGCTGGTGACTTACCAAGTTCTGGAGAGGTTAGTAATGCCCCATTTTCTATATGTAGAATTTGGTTTAGAGCTTATGTTTATCGGTGTCTGGAAAATTTATCATACTCAAATCAAAGAGTGTTGCCTTTATTCAGTCTTCTGTTACAATATTTCTATGTTATTAGGAGACAGTATTTTGGGTTCAATGTTTAAAATGGTTCCTGTACAGTTCCTCGTAATTACTTTTTTTAGTTAAACATAATATGGAGAGATGCATTTCTTCATGGTTAGTCCTCATAGATGTGAATCATGAGAAGTGTACCATGAATCCATGATTTAGACATATTTTTTCTTTTTCTAGTATTAGCTCAAATTCCCCTCATGGTTCTTGTCCTGTCTTTCTTTTTTCTAGTTGTGACAAATGTCATTTCTTTTCAGTTATCGATCAGAACTTCTTGGTAATGTCTATGGCATCCTGTCTTGTGATCACTATATTTCTTTTAAAAGGCATTCATCACCCTCCTAAAAAAAGAAGAGAAAATCCGTTGCTCATTCTTTTATCAGTTGAGCAGAAATCGCTGTATCAACTGCATTGTGTAGTTTGGTTCATGACTCCAATTTTTCCTTCAACTGGTTCACTGTGGATGCCTCCAATTCAGTTAGTTATAGCACAATTCTCTCTTAATCTGAATGACTTGCCTGTGCTGCAGGTCTTCAAAATACCAGTGGCACAAGGAGATGTTATAATAGCTGGTACTGATGGGTTGTTTGACAATTTGTACAACAATGATATTAATGCAATCGTCGTTCATGCAACGAGAGCTGGCTTAGGGCCACAGGTGACAGCTCAGAAGATAGCTGCATTAGCTCGGCAAAGAGCACAGGATAAAAACAGGCAGACCCCTTTCTCTTCTGCAGCTCAAGAAGCTGGGTTCCGTTACTATGGAGGGAAGCTGGACGATATAACTGTGGTTGTATCCTACATAAGCAGTGACAGAAACGTATGAGCACACTCTGTATTTTCGCCACCTCCCCTCCTTTCTTTATTTGCTTACATTTATAAATTTTTTCTTGCTGGACACGACAGGCATCACTTCACTTCTTTGGATGTCCTAAATTGTTCTATCATACTTCTACACAAAAAGGCTGTGCCAAACCTTTCTAACACACACAGACTCCTTTATTTCTCTCATAAATTTAAACTTTACTACCTGTGAAGAGTGCTGCATTTTGTTTCAATTATCTAAATCTCTGTTTATAAATATCTCTTCATTCTTATGTTGCGCCTACTCTTCATTTAAGTTTGTTTTTCTCTCATCTTTTAATGGTTTTCAATACATATAGAAAGTCCTAGTTCTTACTGTTTCATATCAGCGTTTTACAAAAACTCCGATCATGTTGACTTATCATTCAACACGGCCTCACTTATCAAAGCATTGTTATGAAGCACCTTTTCAACTAGTTCTGTGTTGTATTTCAAACAAAGTAGAAGCTGTAGCTTACTCTCGTGTACGTTTTATAGAAAATGGGGACTGATGCCTCTCTTGTCCGATGATGTGCAGGAAAGATCTAACAGCTTAAAGATGTAGTTAAGAGCTTTCGTTTCTTGCTTTGGATCGCCTGCTTCGGTCTACAGCCTACAGCCTACAGGTTTTAAGCTCCATTTGATGGGGATGTCAAATCTTTGC</genome_strand>
        <mrna_strand>CAGAGTCCTCGATAAAGCTTATACATGCACAAAAGCCAAAGGTTCCTCAACTGCCTGTATAATTGCCCTCACAGATCAG.......................................................................................GGTCTGCATGCTATTAATTTAGGAGATAGCGGATTCATTGTGGTCAGAGATGGATCTACTGTTTTCAGATCCCCTGTGCAGCAGCATGATTTCAATTTCACGTATCAACTAGAGAGTGGTAATGCTGGTGACTTACCAAGTTCTGGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTCAAAATACCAGTGGCACAAGGAGATGTTATAATAGCTGGTACTGATGGGTTGTTTGACAATTTGTACAACAATGATATTAATGCAATCGTCGTTCATGCAACGAGAGCTGGCTTAGGGCCACAGGTGACAGCTCAGAAGATAGCTGCATTAGCTCGGCAAAGAGCACAGGATAAAAACAGGCAGACCCCTTTCTCTTCTGCAGCTCAAGAAGCTGGGTTCCGTTACTATGGAGGGAAGCTGGACGATATAACTGTGGTTGTATCCTACATAAGCAGTGACAGAAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGATCTAACAGCTTAAAGATGTAGTTAAGAGCTTTCGTTTCTTGCTTTGTATCGCCTGCTTCGGTCTACAGCCTACAGCCTACAGGTTTTAAGCTCCATTTGATGGGGATGTCAAATCTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272083" ref_strand="+" ref_description="SGN-E272083 [cLEM-8-P10]">
      <seq>gccagagtcctcgataaagcttatacatgcacaaaagccaaaggttcctcaactgcctgtataattgccctcacagatcaaggtctgcatgctattaatttaagagatagcggattcattgtggtcagagatggatctactgttttcagatcccctgtgcagcagcatgatttcaatttcacgtatcaactagagagtggtaatgctggtgacttaccaagttctggagaggtcttcaaaataccagtggcacaaggagatgttataatagctggtactgatgggttgtttgacaatttgtacaacaatgatattaatgcaatcgtcgttcatgcaacgagagctggcttaaggccacaagtgacagctcagaagatagctgcattagctcggcaaagagcacaggataaaaacaggcagacccctttctcttctgcagctcaagaagctgggttccgttactatggagggaagctggacgatataactgtggttgtatcctacataagcagtgacagaaacgaaagatctaacagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="-" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="52577" stop="50694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52277" g_stop="52197" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52196" i_stop="52110" i_length="87">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52109" g_stop="51960" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="231" r_length="150" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51959" i_stop="51298" i_length="662">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51297" g_stop="51007" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="522" r_length="291" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="-" ref_id="SGN-E272083" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52277" e_stop="52197"/>
          <exon e_start="52109" e_stop="51960"/>
          <exon e_start="51297" e_stop="51007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAGAGTCCTCGATAAAGCTTATACATGCACAAAAGCCAAAGGTTCCTCAACTGCCTGTATAATTGCCCTCACAGATCAGGTACATGTGCAATTCTCAGCCATTTTGGAGTATGTATACTTTTGAGTTTGGCCATTGTTAGACTTATCATTTTTCTTCTCTTCCCAGGGTCTGCATGCTATTAATTTAGGAGATAGCGGATTCATTGTGGTCAGAGATGGATCTACTGTTTTCAGATCCCCTGTGCAGCAGCATGATTTCAATTTCACGTATCAACTAGAGAGTGGTAATGCTGGTGACTTACCAAGTTCTGGAGAGGTTAGTAATGCCCCATTTTCTATATGTAGAATTTGGTTTAGAGCTTATGTTTATCGGTGTCTGGAAAATTTATCATACTCAAATCAAAGAGTGTTGCCTTTATTCAGTCTTCTGTTACAATATTTCTATGTTATTAGGAGACAGTATTTTGGGTTCAATGTTTAAAATGGTTCCTGTACAGTTCCTCGTAATTACTTTTTTTAGTTAAACATAATATGGAGAGATGCATTTCTTCATGGTTAGTCCTCATAGATGTGAATCATGAGAAGTGTACCATGAATCCATGATTTAGACATATTTTTTCTTTTTCTAGTATTAGCTCAAATTCCCCTCATGGTTCTTGTCCTGTCTTTCTTTTTTCTAGTTGTGACAAATGTCATTTCTTTTCAGTTATCGATCAGAACTTCTTGGTAATGTCTATGGCATCCTGTCTTGTGATCACTATATTTCTTTTAAAAGGCATTCATCACCCTCCTAAAAAAAGAAGAGAAAATCCGTTGCTCATTCTTTTATCAGTTGAGCAGAAATCGCTGTATCAACTGCATTGTGTAGTTTGGTTCATGACTCCAATTTTTCCTTCAACTGGTTCACTGTGGATGCCTCCAATTCAGTTAGTTATAGCACAATTCTCTCTTAATCTGAATGACTTGCCTGTGCTGCAGGTCTTCAAAATACCAGTGGCACAAGGAGATGTTATAATAGCTGGTACTGATGGGTTGTTTGACAATTTGTACAACAATGATATTAATGCAATCGTCGTTCATGCAACGAGAGCTGGCTTAGGGCCACAGGTGACAGCTCAGAAGATAGCTGCATTAGCTCGGCAAAGAGCACAGGATAAAAACAGGCAGACCCCTTTCTCTTCTGCAGCTCAAGAAGCTGGGTTCCGTTACTATGGAGGGAAGCTGGACGATATAACTGTGGTTGTATCCTACATAAGCAGTGACAGAAAC</genome_strand>
        <mrna_strand>GCCAGAGTCCTCGATAAAGCTTATACATGCACAAAAGCCAAAGGTTCCTCAACTGCCTGTATAATTGCCCTCACAGATCAA.......................................................................................GGTCTGCATGCTATTAATTTAAGAGATAGCGGATTCATTGTGGTCAGAGATGGATCTACTGTTTTCAGATCCCCTGTGCAGCAGCATGATTTCAATTTCACGTATCAACTAGAGAGTGGTAATGCTGGTGACTTACCAAGTTCTGGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTCAAAATACCAGTGGCACAAGGAGATGTTATAATAGCTGGTACTGATGGGTTGTTTGACAATTTGTACAACAATGATATTAATGCAATCGTCGTTCATGCAACGAGAGCTGGCTTAAGGCCACAAGTGACAGCTCAGAAGATAGCTGCATTAGCTCGGCAAAGAGCACAGGATAAAAACAGGCAGACCCCTTTCTCTTCTGCAGCTCAAGAAGCTGGGTTCCGTTACTATGGAGGGAAGCTGGACGATATAACTGTGGTTGTATCCTACATAAGCAGTGACAGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710766" ref_strand="+" ref_description="SGN-E710766 [FA56CF04]">
      <seq>cgtctaactcactggtcgctattcaagatgagccatgaggttcagtggacccacccagactcctcgataaagctcatacatgcacgaaagccaaaggttcctcaactgcctgtataattgccctcacagatcatggtctgcatgctattaatttacgagatagcggattctttgtggtcctagatggatctactgttttcaaatcccctgtgcagcagcatgatttcaatttcacggatccactagatagcggtaatgctggtgacttaccaacttctggacaggtcttcaaaataccagcggcacaaggagatgttataatagctggtactgatgggttgtttgacaatttgtacaacaatgatattactgccaccgtcgttgatgcaacgagagctggcttaaggccgcaggtgacagctcagaagatagctgcattacctcggcagagaccacaggataataacaggcagacccctttctcttctgcaattcaagaagctgggttccgttactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="-" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="52629" stop="50764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52330" g_stop="52197" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.910"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52196" i_stop="52110" i_length="87">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52109" g_stop="51960" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="284" r_length="150" r_score="0.927"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51959" i_stop="51298" i_length="662">
            <donor d_prob="0.998" d_score="0.88"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51297" g_stop="51064" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="518" r_length="234" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="-" ref_id="SGN-E710766" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52330" e_stop="52197"/>
          <exon e_start="52109" e_stop="51960"/>
          <exon e_start="51297" e_stop="51064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCGAACTCAGTGGCCGCAATTCAAGATGAGCCAAAAGGTTCAGTGGACCCAGCCAGAGTCCTCGATAAAGCTTATACATGCACAAAAGCCAAAGGTTCCTCAACTGCCTGTATAATTGCCCTCACAGATCAGGTACATGTGCAATTCTCAGCCATTTTGGAGTATGTATACTTTTGAGTTTGGCCATTGTTAGACTTATCATTTTTCTTCTCTTCCCAGGGTCTGCATGCTATTAATTTAGGAGATAGCGGATTCATTGTGGTCAGAGATGGATCTACTGTTTTCAGATCCCCTGTGCAGCAGCATGATTTCAATTTCACGTATCAACTAGAGAGTGGTAATGCTGGTGACTTACCAAGTTCTGGAGAGGTTAGTAATGCCCCATTTTCTATATGTAGAATTTGGTTTAGAGCTTATGTTTATCGGTGTCTGGAAAATTTATCATACTCAAATCAAAGAGTGTTGCCTTTATTCAGTCTTCTGTTACAATATTTCTATGTTATTAGGAGACAGTATTTTGGGTTCAATGTTTAAAATGGTTCCTGTACAGTTCCTCGTAATTACTTTTTTTAGTTAAACATAATATGGAGAGATGCATTTCTTCATGGTTAGTCCTCATAGATGTGAATCATGAGAAGTGTACCATGAATCCATGATTTAGACATATTTTTTCTTTTTCTAGTATTAGCTCAAATTCCCCTCATGGTTCTTGTCCTGTCTTTCTTTTTTCTAGTTGTGACAAATGTCATTTCTTTTCAGTTATCGATCAGAACTTCTTGGTAATGTCTATGGCATCCTGTCTTGTGATCACTATATTTCTTTTAAAAGGCATTCATCACCCTCCTAAAAAAAGAAGAGAAAATCCGTTGCTCATTCTTTTATCAGTTGAGCAGAAATCGCTGTATCAACTGCATTGTGTAGTTTGGTTCATGACTCCAATTTTTCCTTCAACTGGTTCACTGTGGATGCCTCCAATTCAGTTAGTTATAGCACAATTCTCTCTTAATCTGAATGACTTGCCTGTGCTGCAGGTCTTCAAAATACCAGTGGCACAAGGAGATGTTATAATAGCTGGTACTGATGGGTTGTTTGACAATTTGTACAACAATGATATTAATGCAATCGTCGTTCATGCAACGAGAGCTGGCTTAGGGCCACAGGTGACAGCTCAGAAGATAGCTGCATTAGCTCGGCAAAGAGCACAGGATAAAAACAGGCAGACCCCTTTCTCTTCTGCAGCTCAAGAAGCTGGGTTCCGTTACTAT</genome_strand>
        <mrna_strand>CGTCTAACTCACTGGTCGCTATTCAAGATGAGCCATGAGGTTCAGTGGACCCACCCAGACTCCTCGATAAAGCTCATACATGCACGAAAGCCAAAGGTTCCTCAACTGCCTGTATAATTGCCCTCACAGATCAT.......................................................................................GGTCTGCATGCTATTAATTTACGAGATAGCGGATTCTTTGTGGTCCTAGATGGATCTACTGTTTTCAAATCCCCTGTGCAGCAGCATGATTTCAATTTCACGGATCCACTAGATAGCGGTAATGCTGGTGACTTACCAACTTCTGGACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTCAAAATACCAGCGGCACAAGGAGATGTTATAATAGCTGGTACTGATGGGTTGTTTGACAATTTGTACAACAATGATATTACTGCCACCGTCGTTGATGCAACGAGAGCTGGCTTAAGGCCGCAGGTGACAGCTCAGAAGATAGCTGCATTACCTCGGCAGAGACCACAGGATAATAACAGGCAGACCCCTTTCTCTTCTGCAATTCAAGAAGCTGGGTTCCGTTACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313669" ref_strand="+" ref_description="SGN-E313669 [cTOA-12-F20]">
      <seq>cgcaattcaagatgagccaaaaggttcagtggacccagccagagtcctcgataaagcttatacatgcacaaaagccaaaggttcctcaactgcctgtataattgccctcacagatcagggtctgcatgctattaatttaggagatagcggattcattgtggtcagagatggatctactgttttcagatcccctgtgcagcagcatgatttcaatttcacgtatcaactagagagtggtaatgctggtgacttaccaagttctggagaggtcttcaaaataccagtggcacaaggagatgttataatagctggtactgatgggttgtttgacaatttgtacaacaatgatattaatgcaatcgtcgttcatgcaacgagagctggcttanggccacaggtgacagctcagaagatagctgcattagctcggcaaagagcacaggataaaaacaggcagacccctttctcttctgcagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="-" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="52614" stop="50787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52314" g_stop="52197" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52196" i_stop="52110" i_length="87">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52109" g_stop="51960" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="268" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51959" i_stop="51298" i_length="662">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51297" g_stop="51087" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="479" r_length="211" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="-" ref_id="SGN-E313669" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52314" e_stop="52197"/>
          <exon e_start="52109" e_stop="51960"/>
          <exon e_start="51297" e_stop="51087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAATTCAAGATGAGCCAAAAGGTTCAGTGGACCCAGCCAGAGTCCTCGATAAAGCTTATACATGCACAAAAGCCAAAGGTTCCTCAACTGCCTGTATAATTGCCCTCACAGATCAGGTACATGTGCAATTCTCAGCCATTTTGGAGTATGTATACTTTTGAGTTTGGCCATTGTTAGACTTATCATTTTTCTTCTCTTCCCAGGGTCTGCATGCTATTAATTTAGGAGATAGCGGATTCATTGTGGTCAGAGATGGATCTACTGTTTTCAGATCCCCTGTGCAGCAGCATGATTTCAATTTCACGTATCAACTAGAGAGTGGTAATGCTGGTGACTTACCAAGTTCTGGAGAGGTTAGTAATGCCCCATTTTCTATATGTAGAATTTGGTTTAGAGCTTATGTTTATCGGTGTCTGGAAAATTTATCATACTCAAATCAAAGAGTGTTGCCTTTATTCAGTCTTCTGTTACAATATTTCTATGTTATTAGGAGACAGTATTTTGGGTTCAATGTTTAAAATGGTTCCTGTACAGTTCCTCGTAATTACTTTTTTTAGTTAAACATAATATGGAGAGATGCATTTCTTCATGGTTAGTCCTCATAGATGTGAATCATGAGAAGTGTACCATGAATCCATGATTTAGACATATTTTTTCTTTTTCTAGTATTAGCTCAAATTCCCCTCATGGTTCTTGTCCTGTCTTTCTTTTTTCTAGTTGTGACAAATGTCATTTCTTTTCAGTTATCGATCAGAACTTCTTGGTAATGTCTATGGCATCCTGTCTTGTGATCACTATATTTCTTTTAAAAGGCATTCATCACCCTCCTAAAAAAAGAAGAGAAAATCCGTTGCTCATTCTTTTATCAGTTGAGCAGAAATCGCTGTATCAACTGCATTGTGTAGTTTGGTTCATGACTCCAATTTTTCCTTCAACTGGTTCACTGTGGATGCCTCCAATTCAGTTAGTTATAGCACAATTCTCTCTTAATCTGAATGACTTGCCTGTGCTGCAGGTCTTCAAAATACCAGTGGCACAAGGAGATGTTATAATAGCTGGTACTGATGGGTTGTTTGACAATTTGTACAACAATGATATTAATGCAATCGTCGTTCATGCAACGAGAGCTGGCTTAGGGCCACAGGTGACAGCTCAGAAGATAGCTGCATTAGCTCGGCAAAGAGCACAGGATAAAAACAGGCAGACCCCTTTCTCTTCTGCAGCTC</genome_strand>
        <mrna_strand>CGCAATTCAAGATGAGCCAAAAGGTTCAGTGGACCCAGCCAGAGTCCTCGATAAAGCTTATACATGCACAAAAGCCAAAGGTTCCTCAACTGCCTGTATAATTGCCCTCACAGATCAG.......................................................................................GGTCTGCATGCTATTAATTTAGGAGATAGCGGATTCATTGTGGTCAGAGATGGATCTACTGTTTTCAGATCCCCTGTGCAGCAGCATGATTTCAATTTCACGTATCAACTAGAGAGTGGTAATGCTGGTGACTTACCAAGTTCTGGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTCAAAATACCAGTGGCACAAGGAGATGTTATAATAGCTGGTACTGATGGGTTGTTTGACAATTTGTACAACAATGATATTAATGCAATCGTCGTTCATGCAACGAGAGCTGGCTTANGGCCACAGGTGACAGCTCAGAAGATAGCTGCATTAGCTCGGCAAAGAGCACAGGATAAAAACAGGCAGACCCCTTTCTCTTCTGCAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334265" ref_strand="+" ref_description="SGN-E334265 [cTOD-21-E19]">
      <seq>atgtgtcatttggtagctctacgtgtggggtgcagctctcaagttcagcagattcatctgaacagaatatccgcattgacagaaccctgaaactaaattccggatcatgttacctgcctcatcctgataaagaagatactggtggagaggatgctcattttatttgcagtgatgaacaagcaattggtgtagctgatggtgttggtggttgggctgatcttggtattgatgctgggaagtatgcacgagagctaatgtcgaactcagtggccgcaattcaagatgagccaaaaggttcagtggacccagccagagtcctcgataaagcttatacatgcacaaaagccaaaggttcctcaactgcctgtataattgccctcacagatcagggtctgcatgctattaatttaggagatagcggattcattgtggtcagagatggatctactgttttcagatcccctgtgcagcagcatgatttcaatttcacgtatcaactagagagtggtaatgctggtgacttaccnagttctggagaggtcttcaaaataccagtggcacaaggagatgttataatagctggtactgatgggttgtttgacaaaattgtacacaatgatattaaatgcatcgtcgttcatgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="-" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="53924" stop="50892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53624" g_stop="53561" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53560" i_stop="52522" i_length="1039">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52521" g_stop="52197" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="389" r_length="325" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52196" i_stop="52110" i_length="87">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52109" g_stop="51960" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="539" r_length="150" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51959" i_stop="51298" i_length="662">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51297" g_stop="51192" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="645" r_length="106" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="-" ref_id="SGN-E334265" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53624" e_stop="53561"/>
          <exon e_start="52521" e_stop="52197"/>
          <exon e_start="52109" e_stop="51960"/>
          <exon e_start="51297" e_stop="51192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTGTCATTTGGTAGCTCTACGTGTGGGGTGCAGCTCTCAAGTTCAGCAGATTCATCTGAACAGTATGCTTCCTTTCATAACTTTCTATTCTTATTCACCCTTGTATAGCTGAAATACAGGGAATTCATGTCATTTCATACAATACAAAAAAAAAAAGAAAAGAAAAAGAAATATGCAAACTACATATGTGGAAGTGAAGGAAATATTATTGACTTGAACACCATCCTCAGTTTAGAAACTTAAAGCATCTTCTTGTTAAATAAATTTAACGAAATTGGCGTGAGTAGTGCTTAAATTTTCGAAAGTATTAGAATTCCTTAGAATGTAGTGTTATATCCATAGTTTATACCAGAAGAAAATTTAAGAACTCAAAGGGTTGAGAAAATTTGCTACCTTATGAAATTTTGCGCCTGAAGTAGATTAAGAATTGAAAGAAGTCATGTGCTAGGTTGCGTCGTTTGGGATAATATTTTCTTTTATTTGCCTGTGCTTCAAAACCATATTTGCCAATATCACAATTCTGGAAACTAAAAAAGAAAACACAAAAATGACTTGAGAAGTATTTATTATTAGAACTTAGATGCTCCTCAACTATCTTTGGTTGAGGCATCGTTGTTAGCGCTGTCTGTTATGAGAAAATATTAGATGCTTAATACAATTTGTCTACCACCATGAGAAAGCTACTAGCTAATTTCAAAGGTGGAACTTGAGTAAAAAAGTACTATGTAAAAGTTAAAATCGTCCTGAAAGTTTCTCAAGGTTAGCTACCGTGAGGAAAAAAAAAACAAATTTCAAAGCTTTGACAAGCTTGTCTCTTGTTCGAAACCTTTCTTTGAGCTGGCATCCATCTCTGGTGGAAGATCAGTTGGATTTTTATATCATATCCCACTTATTTGTATGGAGGAAAGGGTGGCTTACCTAATACCTTTTACTATAGAGTACCAATATTTTTGCATAGTCATTATGTAGATCTTGAACATTTTGTAATTCTCTCCTTCATGTTCTGTAGATTGCTTATCAAAAGAATATGCTGCATTTACTTTTACATTGAAGTGAGAAGTCTTTCTATTCATTCCTATAGTTGCTTTGGCCCAATTGCAGGAATATCCGCATTGACAGAACCCTGAAACTAAATTCCGGATCATGTTACCTGCCTCATCCTGATAAAGAAGATACTGGTGGAGAGGATGCTCATTTTATTTGCAGTGATGAACAAGCAATTGGTGTAGCTGATGGTGTTGGTGGTTGGGCTGATCTTGGTATTGATGCTGGGAAGTATGCACGAGAGCTAATGTCGAACTCAGTGGCCGCAATTCAAGATGAGCCAAAAGGTTCAGTGGACCCAGCCAGAGTCCTCGATAAAGCTTATACATGCACAAAAGCCAAAGGTTCCTCAACTGCCTGTATAATTGCCCTCACAGATCAGGTACATGTGCAATTCTCAGCCATTTTGGAGTATGTATACTTTTGAGTTTGGCCATTGTTAGACTTATCATTTTTCTTCTCTTCCCAGGGTCTGCATGCTATTAATTTAGGAGATAGCGGATTCATTGTGGTCAGAGATGGATCTACTGTTTTCAGATCCCCTGTGCAGCAGCATGATTTCAATTTCACGTATCAACTAGAGAGTGGTAATGCTGGTGACTTACCAAGTTCTGGAGAGGTTAGTAATGCCCCATTTTCTATATGTAGAATTTGGTTTAGAGCTTATGTTTATCGGTGTCTGGAAAATTTATCATACTCAAATCAAAGAGTGTTGCCTTTATTCAGTCTTCTGTTACAATATTTCTATGTTATTAGGAGACAGTATTTTGGGTTCAATGTTTAAAATGGTTCCTGTACAGTTCCTCGTAATTACTTTTTTTAGTTAAACATAATATGGAGAGATGCATTTCTTCATGGTTAGTCCTCATAGATGTGAATCATGAGAAGTGTACCATGAATCCATGATTTAGACATATTTTTTCTTTTTCTAGTATTAGCTCAAATTCCCCTCATGGTTCTTGTCCTGTCTTTCTTTTTTCTAGTTGTGACAAATGTCATTTCTTTTCAGTTATCGATCAGAACTTCTTGGTAATGTCTATGGCATCCTGTCTTGTGATCACTATATTTCTTTTAAAAGGCATTCATCACCCTCCTAAAAAAAGAAGAGAAAATCCGTTGCTCATTCTTTTATCAGTTGAGCAGAAATCGCTGTATCAACTGCATTGTGTAGTTTGGTTCATGACTCCAATTTTTCCTTCAACTGGTTCACTGTGGATGCCTCCAATTCAGTTAGTTATAGCACAATTCTCTCTTAATCTGAATGACTTGCCTGTGCTGCAGGTCTTCAAAATACCAGTGGCACAAGGAGATGTTATAATAGCTGGTACTGATGGGTTGTTTGAC-AATTTGTACAACAATGATATTAATGCAATCGTCGTTCATGCAA</genome_strand>
        <mrna_strand>ATGTGTCATTTGGTAGCTCTACGTGTGGGGTGCAGCTCTCAAGTTCAGCAGATTCATCTGAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATCCGCATTGACAGAACCCTGAAACTAAATTCCGGATCATGTTACCTGCCTCATCCTGATAAAGAAGATACTGGTGGAGAGGATGCTCATTTTATTTGCAGTGATGAACAAGCAATTGGTGTAGCTGATGGTGTTGGTGGTTGGGCTGATCTTGGTATTGATGCTGGGAAGTATGCACGAGAGCTAATGTCGAACTCAGTGGCCGCAATTCAAGATGAGCCAAAAGGTTCAGTGGACCCAGCCAGAGTCCTCGATAAAGCTTATACATGCACAAAAGCCAAAGGTTCCTCAACTGCCTGTATAATTGCCCTCACAGATCAG.......................................................................................GGTCTGCATGCTATTAATTTAGGAGATAGCGGATTCATTGTGGTCAGAGATGGATCTACTGTTTTCAGATCCCCTGTGCAGCAGCATGATTTCAATTTCACGTATCAACTAGAGAGTGGTAATGCTGGTGACTTACCNAGTTCTGGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTCAAAATACCAGTGGCACAAGGAGATGTTATAATAGCTGGTACTGATGGGTTGTTTGACAAAATTGTAC-ACAATGATATTAAATGCATCGTCGTTCATGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E400813" ref_strand="+" ref_description="SGN-E400813 [PPC-2-O21]">
      <seq>tgccgcacagacgaatttgcacgtagtaaaccagaaaaagaatatttctgtagttggagctatttctcgtgcagtttcaattccttctgtgtcagggccagcatttcacatctgtggctatcacattgatcgcgtgatatcggaccctgctaaaagtttgtctgacagcgactctcacaaagcacctatggaaatctgtggttctcgaacttctcctcctggctgttcctcaagcaaaatgacttcaagacatctcaatgctgttctttctgtaaataatcctattacctcttacagcaataaaagctttgataattgtagaaaagccagcatgagtttgagaaataaaaatcagcccaacaactttttactttacggatatttcgcatacaatgtagcaaagagacggggaaattctaatctatatgcaggcttttggtttgatggggttccatacttcatcaactgcttcttcttctactggcactgctcatgatgtgtcatttggtaactctnacgtgtggggtgcagctctcaagttcagcggattcatctgaacagaatatctgcattgacagaaccctgaaactnaaattccggatcatgttacctgcctcatcctgataaagaagaatacttggtggagaggatgctcatttttatttgcagtgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="-" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="54418" stop="52111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54118" g_stop="53561" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53560" i_stop="52522" i_length="1039">
            <donor d_prob="0.994" d_score="0.92"/>
            <acceptor a_prob="0.910" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52521" g_stop="52411" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="675" r_length="115" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="-" ref_id="SGN-E400813" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E400813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54118" e_stop="53561"/>
          <exon e_start="52521" e_stop="52411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCGCACAGGCGAATTTGCACGTAGCAAACCAGAAAAAGAATATTTCTGTAGTTGGAGCTATTTCTCGTGCAGTTTCAATTCCTTCTGTGTCAGGACCAGCATTTCACATCTGTGGCTATCACATTGATCGCGTGATATTGGACCCGGCTGAAAGTTTGTCTGACAGCGACTCTCACAAAGCACCTATGGAAATCTGTGGTTCTCGAACTTGTCCTCCTGGCTGTTCCTCAAGCAAAATGACTTCAAGACATCTCAATGGTGTTCTTTCTGTAAATAATCCTATTACCTCTTATAGCAATAAAAGCTTTGATAATTGTAGAAAAGCCAGCATGAGTTTGAGAAACAAAAATCAGCCCAACAACTTTTTACTTTACGGATATTTCGCATACAATGTGGCAAAGAGACGGGGAAATTCTAATCTATATGAAGGC-TTTGGTTTGATGGGGTTCCATACTTCATCAACTGCTTCTTCTTCTACTGGCACTGCTCATGATGTGTCATTTGGTAGCTCT-ACGTGTGGGGTGCAGCTCTCAAGTTCAGCAGATTCATCTGAACAGTATGCTTCCTTTCATAACTTTCTATTCTTATTCACCCTTGTATAGCTGAAATACAGGGAATTCATGTCATTTCATACAATACAAAAAAAAAAAGAAAAGAAAAAGAAATATGCAAACTACATATGTGGAAGTGAAGGAAATATTATTGACTTGAACACCATCCTCAGTTTAGAAACTTAAAGCATCTTCTTGTTAAATAAATTTAACGAAATTGGCGTGAGTAGTGCTTAAATTTTCGAAAGTATTAGAATTCCTTAGAATGTAGTGTTATATCCATAGTTTATACCAGAAGAAAATTTAAGAACTCAAAGGGTTGAGAAAATTTGCTACCTTATGAAATTTTGCGCCTGAAGTAGATTAAGAATTGAAAGAAGTCATGTGCTAGGTTGCGTCGTTTGGGATAATATTTTCTTTTATTTGCCTGTGCTTCAAAACCATATTTGCCAATATCACAATTCTGGAAACTAAAAAAGAAAACACAAAAATGACTTGAGAAGTATTTATTATTAGAACTTAGATGCTCCTCAACTATCTTTGGTTGAGGCATCGTTGTTAGCGCTGTCTGTTATGAGAAAATATTAGATGCTTAATACAATTTGTCTACCACCATGAGAAAGCTACTAGCTAATTTCAAAGGTGGAACTTGAGTAAAAAAGTACTATGTAAAAGTTAAAATCGTCCTGAAAGTTTCTCAAGGTTAGCTACCGTGAGGAAAAAAAAAACAAATTTCAAAGCTTTGACAAGCTTGTCTCTTGTTCGAAACCTTTCTTTGAGCTGGCATCCATCTCTGGTGGAAGATCAGTTGGATTTTTATATCATATCCCACTTATTTGTATGGAGGAAAGGGTGGCTTACCTAATACCTTTTACTATAGAGTACCAATATTTTTGCATAGTCATTATGTAGATCTTGAACATTTTGTAATTCTCTCCTTCATGTTCTGTAGATTGCTTATCAAAAGAATATGCTGCATTTACTTTTACATTGAAGTGAGAAGTCTTTCTATTCATTCCTATAGTTGCTTTGGCCCAATTGCAGGAATATCCGCATTGACAGAACCCTGAAACT-AAATTCCGGATCATGTTACCTGCCTCATCCTGATAAAGAAG-ATAC-TGGTGGAGAGGATGCTCA-TTTTATTTGCAGTGATGA</genome_strand>
        <mrna_strand>TGCCGCACAGACGAATTTGCACGTAGTAAACCAGAAAAAGAATATTTCTGTAGTTGGAGCTATTTCTCGTGCAGTTTCAATTCCTTCTGTGTCAGGGCCAGCATTTCACATCTGTGGCTATCACATTGATCGCGTGATATCGGACCCTGCTAAAAGTTTGTCTGACAGCGACTCTCACAAAGCACCTATGGAAATCTGTGGTTCTCGAACTTCTCCTCCTGGCTGTTCCTCAAGCAAAATGACTTCAAGACATCTCAATGCTGTTCTTTCTGTAAATAATCCTATTACCTCTTACAGCAATAAAAGCTTTGATAATTGTAGAAAAGCCAGCATGAGTTTGAGAAATAAAAATCAGCCCAACAACTTTTTACTTTACGGATATTTCGCATACAATGTAGCAAAGAGACGGGGAAATTCTAATCTATATGCAGGCTTTTGGTTTGATGGGGTTCCATACTTCATCAACTGCTTCTTCTTCTACTGGCACTGCTCATGATGTGTCATTTGGTAACTCTNACGTGTGGGGTGCAGCTCTCAAGTTCAGCGGATTCATCTGAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATCTGCATTGACAGAACCCTGAAACTNAAATTCCGGATCATGTTACCTGCCTCATCCTGATAAAGAAGAATACTTGGTGGAGAGGATGCTCATTTTTATTTGCAGTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E422382" ref_strand="+" ref_description="SGN-E422382 [STM-40-I4]">
      <seq>gggctccaggattcggttgagattttggttgcccaagggagattgttgtttggcaattcaaagtgcttctattcagtaccatttgcaagaccaactgacctgaatgtgcttgtccggcctggaaccttagctgccgcacagacgaatttgcacgtagtaaaccagaaaaagaatatttctgtagttggagctatttctcgtgcagtttcaattccttctgtgtcagggccagcatttcacatctgtggctatcacattgatcgcgtgatatcggaccctgctaaaagtttgtctgacagcgactctcacaaagcacctatggaaatctgtggttctcgaacttctcctcctggctgttcctcaagcaaaatgacttcaagacatctcaatgctgttctttctgtaaataatcctattacctcttacagcaatagaagctttgataattgtagaaaagccagcatgagtttgagaaataacaatcagcccaacaactttttactttacggatatttcgcatacaatgtagcaaagagacggggaaattctaatctatatgcaggctttggtttgatggggttccatacttcatcaactgcttcttcttctactggcactgctcatgatgtgtcatttggtaactctacgtgtggggtgcagctctcaagttcagcggattcatctgaacagaatatctgcattgacagaacccctgaactaattccggatcatgttacctgcctcatcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="-" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="54549" stop="52160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54249" g_stop="53561" g_length="689"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="689" r_length="689" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53560" i_stop="52522" i_length="1039">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.910" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52521" g_stop="52460" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="690" r_stop="750" r_length="61" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="-" ref_id="SGN-E422382" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E422382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54249" e_stop="53561"/>
          <exon e_start="52521" e_stop="52460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGCTCCAGGATTCGGTTGAGATTTTGGTTGCCCAAGGGAGATTGTTGTTTGGCAATTCAAAGTGCTTCTATTCAGTACCATTTGCAAGAGCAACTGACCTGAATGTGCTTGTCCGGCCTGGAACCTTAGCTGCCGCACAGGCGAATTTGCACGTAGCAAACCAGAAAAAGAATATTTCTGTAGTTGGAGCTATTTCTCGTGCAGTTTCAATTCCTTCTGTGTCAGGACCAGCATTTCACATCTGTGGCTATCACATTGATCGCGTGATATTGGACCCGGCTGAAAGTTTGTCTGACAGCGACTCTCACAAAGCACCTATGGAAATCTGTGGTTCTCGAACTTGTCCTCCTGGCTGTTCCTCAAGCAAAATGACTTCAAGACATCTCAATGGTGTTCTTTCTGTAAATAATCCTATTACCTCTTATAGCAATAAAAGCTTTGATAATTGTAGAAAAGCCAGCATGAGTTTGAGAAACAAAAATCAGCCCAACAACTTTTTACTTTACGGATATTTCGCATACAATGTGGCAAAGAGACGGGGAAATTCTAATCTATATGAAGGCTTTGGTTTGATGGGGTTCCATACTTCATCAACTGCTTCTTCTTCTACTGGCACTGCTCATGATGTGTCATTTGGTAGCTCTACGTGTGGGGTGCAGCTCTCAAGTTCAGCAGATTCATCTGAACAGTATGCTTCCTTTCATAACTTTCTATTCTTATTCACCCTTGTATAGCTGAAATACAGGGAATTCATGTCATTTCATACAATACAAAAAAAAAAAGAAAAGAAAAAGAAATATGCAAACTACATATGTGGAAGTGAAGGAAATATTATTGACTTGAACACCATCCTCAGTTTAGAAACTTAAAGCATCTTCTTGTTAAATAAATTTAACGAAATTGGCGTGAGTAGTGCTTAAATTTTCGAAAGTATTAGAATTCCTTAGAATGTAGTGTTATATCCATAGTTTATACCAGAAGAAAATTTAAGAACTCAAAGGGTTGAGAAAATTTGCTACCTTATGAAATTTTGCGCCTGAAGTAGATTAAGAATTGAAAGAAGTCATGTGCTAGGTTGCGTCGTTTGGGATAATATTTTCTTTTATTTGCCTGTGCTTCAAAACCATATTTGCCAATATCACAATTCTGGAAACTAAAAAAGAAAACACAAAAATGACTTGAGAAGTATTTATTATTAGAACTTAGATGCTCCTCAACTATCTTTGGTTGAGGCATCGTTGTTAGCGCTGTCTGTTATGAGAAAATATTAGATGCTTAATACAATTTGTCTACCACCATGAGAAAGCTACTAGCTAATTTCAAAGGTGGAACTTGAGTAAAAAAGTACTATGTAAAAGTTAAAATCGTCCTGAAAGTTTCTCAAGGTTAGCTACCGTGAGGAAAAAAAAAACAAATTTCAAAGCTTTGACAAGCTTGTCTCTTGTTCGAAACCTTTCTTTGAGCTGGCATCCATCTCTGGTGGAAGATCAGTTGGATTTTTATATCATATCCCACTTATTTGTATGGAGGAAAGGGTGGCTTACCTAATACCTTTTACTATAGAGTACCAATATTTTTGCATAGTCATTATGTAGATCTTGAACATTTTGTAATTCTCTCCTTCATGTTCTGTAGATTGCTTATCAAAAGAATATGCTGCATTTACTTTTACATTGAAGTGAGAAGTCTTTCTATTCATTCCTATAGTTGCTTTGGCCCAATTGCAGGAATATCCGCATTGACAGAACCCTGAAACTAAATTCCGGATCATGTTACCTGCCTCATCCTG</genome_strand>
        <mrna_strand>GGGCTCCAGGATTCGGTTGAGATTTTGGTTGCCCAAGGGAGATTGTTGTTTGGCAATTCAAAGTGCTTCTATTCAGTACCATTTGCAAGACCAACTGACCTGAATGTGCTTGTCCGGCCTGGAACCTTAGCTGCCGCACAGACGAATTTGCACGTAGTAAACCAGAAAAAGAATATTTCTGTAGTTGGAGCTATTTCTCGTGCAGTTTCAATTCCTTCTGTGTCAGGGCCAGCATTTCACATCTGTGGCTATCACATTGATCGCGTGATATCGGACCCTGCTAAAAGTTTGTCTGACAGCGACTCTCACAAAGCACCTATGGAAATCTGTGGTTCTCGAACTTCTCCTCCTGGCTGTTCCTCAAGCAAAATGACTTCAAGACATCTCAATGCTGTTCTTTCTGTAAATAATCCTATTACCTCTTACAGCAATAGAAGCTTTGATAATTGTAGAAAAGCCAGCATGAGTTTGAGAAATAACAATCAGCCCAACAACTTTTTACTTTACGGATATTTCGCATACAATGTAGCAAAGAGACGGGGAAATTCTAATCTATATGCAGGCTTTGGTTTGATGGGGTTCCATACTTCATCAACTGCTTCTTCTTCTACTGGCACTGCTCATGATGTGTCATTTGGTAACTCTACGTGTGGGGTGCAGCTCTCAAGTTCAGCGGATTCATCTGAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATCTGCATTGACAGAACCCCTGAACT-AATTCCGGATCATGTTACCTGCCTCATCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448266" ref_strand="+" ref_description="SGN-E448266 [cSTS-2-O18]">
      <seq>gggctccaggattcggttgagattttggttgcccaagggagattgttgtttggcaattcaaagtgcttctattcagtaccatttgcaagaccaactgacctgaatgtgcttgtccggcctggaaccttagctgccgcacagacgaatttgcacgtagtaaaccagaaaaagaatatttctgtagttggagctatttctcgtgcagtttcaattccttctgtgtcagggccagcatttcacatctgtggctatcacattgatcgcgtgatatcggaccctgctaaaagtttgtctgacagcgactctcacaaagcacctatggaaatctgtggttctcgaacttctcctcctggctgttcctcaagcaaaatgacttcaagacatctcaatgctgttctttctgtaaataatcctattacctcttacagcaataaaagctttgataattgtagaaaagccagcatgagtttgagaaataaaaatcagcccaacaactttttactttacggatatttcgcatacaatgtagcaaagagacggggaaattctaatctatatgcangctttggtttgatggggttccatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="-" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="54549" stop="53363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54249" g_stop="53663" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="-" ref_id="SGN-E448266" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E448266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54249" e_stop="53663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGCTCCAGGATTCGGTTGAGATTTTGGTTGCCCAAGGGAGATTGTTGTTTGGCAATTCAAAGTGCTTCTATTCAGTACCATTTGCAAGAGCAACTGACCTGAATGTGCTTGTCCGGCCTGGAACCTTAGCTGCCGCACAGGCGAATTTGCACGTAGCAAACCAGAAAAAGAATATTTCTGTAGTTGGAGCTATTTCTCGTGCAGTTTCAATTCCTTCTGTGTCAGGACCAGCATTTCACATCTGTGGCTATCACATTGATCGCGTGATATTGGACCCGGCTGAAAGTTTGTCTGACAGCGACTCTCACAAAGCACCTATGGAAATCTGTGGTTCTCGAACTTGTCCTCCTGGCTGTTCCTCAAGCAAAATGACTTCAAGACATCTCAATGGTGTTCTTTCTGTAAATAATCCTATTACCTCTTATAGCAATAAAAGCTTTGATAATTGTAGAAAAGCCAGCATGAGTTTGAGAAACAAAAATCAGCCCAACAACTTTTTACTTTACGGATATTTCGCATACAATGTGGCAAAGAGACGGGGAAATTCTAATCTATATGAAGGCTTTGGTTTGATGGGGTTCCATAC</genome_strand>
        <mrna_strand>GGGCTCCAGGATTCGGTTGAGATTTTGGTTGCCCAAGGGAGATTGTTGTTTGGCAATTCAAAGTGCTTCTATTCAGTACCATTTGCAAGACCAACTGACCTGAATGTGCTTGTCCGGCCTGGAACCTTAGCTGCCGCACAGACGAATTTGCACGTAGTAAACCAGAAAAAGAATATTTCTGTAGTTGGAGCTATTTCTCGTGCAGTTTCAATTCCTTCTGTGTCAGGGCCAGCATTTCACATCTGTGGCTATCACATTGATCGCGTGATATCGGACCCTGCTAAAAGTTTGTCTGACAGCGACTCTCACAAAGCACCTATGGAAATCTGTGGTTCTCGAACTTCTCCTCCTGGCTGTTCCTCAAGCAAAATGACTTCAAGACATCTCAATGCTGTTCTTTCTGTAAATAATCCTATTACCTCTTACAGCAATAAAAGCTTTGATAATTGTAGAAAAGCCAGCATGAGTTTGAGAAATAAAAATCAGCCCAACAACTTTTTACTTTACGGATATTTCGCATACAATGTAGCAAAGAGACGGGGAAATTCTAATCTATATGCANGCTTTGGTTTGATGGGGTTCCATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245399" ref_strand="+" ref_description="SGN-E245399 [cLEF-53-D2]">
      <seq>ggacccggctgaaagttggtgtgacagcgactctgggaaagcacctatggaaatctgtggttctcgaacttgtcctcctggctgttcctcaagcaaaatgacttcaagacatctcaatggtgttctttctgtaaataatcctattacctcttatagcaataaaagctttgataattgtagaaaagccagcatgagtttgagaaacaaaaatcagcccaacaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="-" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="54277" stop="53453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53977" g_stop="53753" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="-" ref_id="SGN-E245399" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>225</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53977" e_stop="53753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACCCGGCTGAAAGTTTGTCTGACAGCGACTCTCACAAAGCACCTATGGAAATCTGTGGTTCTCGAACTTGTCCTCCTGGCTGTTCCTCAAGCAAAATGACTTCAAGACATCTCAATGGTGTTCTTTCTGTAAATAATCCTATTACCTCTTATAGCAATAAAAGCTTTGATAATTGTAGAAAAGCCAGCATGAGTTTGAGAAACAAAAATCAGCCCAACAACTT</genome_strand>
        <mrna_strand>GGACCCGGCTGAAAGTTGGTGTGACAGCGACTCTGGGAAAGCACCTATGGAAATCTGTGGTTCTCGAACTTGTCCTCCTGGCTGTTCCTCAAGCAAAATGACTTCAAGACATCTCAATGGTGTTCTTTCTGTAAATAATCCTATTACCTCTTATAGCAATAAAAGCTTTGATAATTGTAGAAAAGCCAGCATGAGTTTGAGAAACAAAAATCAGCCCAACAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316410" ref_strand="+" ref_description="SGN-E316410 [cTOA-25-J1]">
      <seq>tcaagagagagaaagagagaggagagagaagcctctaacctaacaaactctcaagattcatatgaaggcaaatcaagttacatttgggggcatttaaagaaacaaattgttttgagctcttaagtttttttatttgtttgtttgtgattttatatggattttgtcatctgggtgtttgcttcctgcaattattattcataaagtaggtgtctggattctcaaagttatattggagaaggagggtagtgcatgagttgatgcttgatattaaatgtactgagcgttatgatagtttttgtgtatagtagtggttgttgtgttttttcctataaagaggtgcaagccaatcagctgtggttaataagccgatatgccgagtaactatctttttagattaagccgggctgctagacagggactccagaaatccatatctgggaaagaaagtgggctccaggattcggttgagattttggttgcccaagggagattgttgtttggcaattcaaagtgcttctattcagtaccatttgcaagagcaactgacctgaatgtgcttgtccggcctggaacctttagctgcgcacaggcgaatttgcacgtagcaaaccagaaaaagaatattctgtatttggagctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="-" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="55932" stop="53755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55632" g_stop="55430" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55429" i_stop="54495" i_length="935">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.842" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54494" g_stop="54055" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="642" r_length="439" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="-" ref_id="SGN-E316410" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55632" e_stop="55430"/>
          <exon e_start="54494" e_stop="54055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGAGAGAGAAAGAGAGAGGAGAGAGAAGCCTCTAACCTAACAAACTCTCAAGATTCATATGAAGGCAAATCAAGTTACATTTGGGGGCATTTAAAGAAACAAATTGTTTTGAGCTCTTAAGTTTTTTTATTTGTTTGTTTGTGATTTTATATGGATTTTGTCATCTGGGTGTTTGCTTCCTGCAATTATTATTCATAAAGGTGCGATCTTTGAACCCTTCTTGTTTGTTTTTGTAATGGGTAGTTGCTTAAAGCTCTGATCTTTTTCATTTGTTATTGAAAATTGTTGAGTTTGTGTGATTATTGTGTTTATTGTTCTCTTGGAGTTTGCATATACCTCCACGAGGTAGTGATAAAGGCCTAGTACACTCTATCCTCTCCAGATTTCATTAGGTATGTTGTCGTTATATAAAAGTGTGAAGTTTTGATCCCTTTATATATGTTTGTGTTTGCTTTGATTTTCGACGTCCATATGGTATAGGGTGATCTCTTTCTTATGTTTAACCTCTGCCTATATGAGCTTCACATTGCTGGGGTGAGATGTGGTCCTAAATTCTTGAGTATTTGAATGAAACATGCCCAAATAGAACGGATATACGAGATTTATATAAGTGATCCAACAAGATTAAGTTTAGAGAGAGTTTTGTTGGCTATTGGTGGTGTGGAAGTGTATTATTTGCGTTGATCGATGACGTGGATATTTGGGATTGACCACACTTATGTTGAGTTTCTTAGTAGTGGATATGGATCTTGGATTTCTATCAAAGAAAGTATTTATGGGAATGGATCAAGTTGAACCTGAATAGAGTGGTGTAGACATATCATGTATATAACCAATTCCAACTAATTTGGAATTGGGGTTATCTGATAATATTATGGTTCTTTATTCTTTTTCTATGAATGGGCTATGGCTTTAGATGATTAAGCAATAGTTTCTTCATAATATTTTTATTTAATTTAGTTGGTTTAGTATTTGTGTGGCTCTTCTTGATTAGTTTTAACTTAAAAATGAGATCAAATGATACTCTTCCGAACATAAACTACATATGCAATAATGTTTAATACTACTATTGAGTACAGTTAATTAACCAAAATATTCATGGTTTCTTTCTCATAATGTTCTCCTTCATCTTCAGTAGGTGTCTGGATTCTCAAAGTTATATTGGAGAAGGAGGGTAGTGCATGAGTTGATGCTTGATATTAAATGTACTGAGCGTTATGATAGTTTTTGTGTATAGTAGTGGTTGTTGTGTTTTTTCCTATAAAGAGGTGCAAGCCAATCAGCTGTGGTTAATAAGCCGATATGCCGAGTAACTATCTTTTTAGATTAAGCCGGGCTGCTAGACAGGGACTCCAGAAATCCATATCTGGGAAAGAAAGTGGGCTCCAGGATTCGGTTGAGATTTTGGTTGCCCAAGGGAGATTGTTGTTTGGCAATTCAAAGTGCTTCTATTCAGTACCATTTGCAAGAGCAACTGACCTGAATGTGCTTGTCCGGCCTGGAACC-TTAGCTGCCGCACAGGCGAATTTGCACGTAGCAAACCAGAAAAAGAATATTTCTGTAGTTGGAGCTATT</genome_strand>
        <mrna_strand>TCAAGAGAGAGAAAGAGAGAGGAGAGAGAAGCCTCTAACCTAACAAACTCTCAAGATTCATATGAAGGCAAATCAAGTTACATTTGGGGGCATTTAAAGAAACAAATTGTTTTGAGCTCTTAAGTTTTTTTATTTGTTTGTTTGTGATTTTATATGGATTTTGTCATCTGGGTGTTTGCTTCCTGCAATTATTATTCATAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGTGTCTGGATTCTCAAAGTTATATTGGAGAAGGAGGGTAGTGCATGAGTTGATGCTTGATATTAAATGTACTGAGCGTTATGATAGTTTTTGTGTATAGTAGTGGTTGTTGTGTTTTTTCCTATAAAGAGGTGCAAGCCAATCAGCTGTGGTTAATAAGCCGATATGCCGAGTAACTATCTTTTTAGATTAAGCCGGGCTGCTAGACAGGGACTCCAGAAATCCATATCTGGGAAAGAAAGTGGGCTCCAGGATTCGGTTGAGATTTTGGTTGCCCAAGGGAGATTGTTGTTTGGCAATTCAAAGTGCTTCTATTCAGTACCATTTGCAAGAGCAACTGACCTGAATGTGCTTGTCCGGCCTGGAACCTTTAGCTG-CGCACAGGCGAATTTGCACGTAGCAAACCAGAAAAAGAATA-TTCTGTATTTGGAGCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338171" ref_strand="+" ref_description="SGN-E338171 [cTOE-13-B2]">
      <seq>ttttttcctataaagaggtgcaagccaatcagctgtggttaataagccgatatgccgagtaactatctttttagattaagccgggctgctagacagggactccagaaatccatatctgggaaagaaagtgggctccaggattcggttgagattttggttgcccaagggagattgttgtttggcaattcaaagtgcttctattcagtaccatttgcaagagcaactgacctgaatgtgcttgtccggcctggaaccttagctgccgcacaggcgaatttgcacgtagcaaaccagaaaaagaatatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="-" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="54678" stop="53771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54378" g_stop="54071" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="-" ref_id="SGN-E338171" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54378" e_stop="54071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCCTATAAAGAGGTGCAAGCCAATCAGCTGTGGTTAATAAGCCGATATGCCGAGTAACTATCTTTTTAGATTAAGCCGGGCTGCTAGACAGGGACTCCAGAAATCCATATCTGGGAAAGAAAGTGGGCTCCAGGATTCGGTTGAGATTTTGGTTGCCCAAGGGAGATTGTTGTTTGGCAATTCAAAGTGCTTCTATTCAGTACCATTTGCAAGAGCAACTGACCTGAATGTGCTTGTCCGGCCTGGAACCTTAGCTGCCGCACAGGCGAATTTGCACGTAGCAAACCAGAAAAAGAATATTTC</genome_strand>
        <mrna_strand>TTTTTTCCTATAAAGAGGTGCAAGCCAATCAGCTGTGGTTAATAAGCCGATATGCCGAGTAACTATCTTTTTAGATTAAGCCGGGCTGCTAGACAGGGACTCCAGAAATCCATATCTGGGAAAGAAAGTGGGCTCCAGGATTCGGTTGAGATTTTGGTTGCCCAAGGGAGATTGTTGTTTGGCAATTCAAAGTGCTTCTATTCAGTACCATTTGCAAGAGCAACTGACCTGAATGTGCTTGTCCGGCCTGGAACCTTAGCTGCCGCACAGGCGAATTTGCACGTAGCAAACCAGAAAAAGAATATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303296" ref_strand="+" ref_description="SGN-E303296 [cLEX-2-A13]">
      <seq>tgattattagggtttgttggttggggaagattaactgtgagccctttaagctcagctcaagagagagaaagagagaggagagagaagcctctaacctaacaaactctcaagattcatatgaaggcaaatcaagttacatttgggggcatttaaagaaacaaattgttttgagctcttaagtttttttatttgtttgtttgtgattttatatggattttgtcatctgggtgtttgcttcctgcaattattattcataaaggtgtctggattctcaaagttatattggagaaggagggtagtgcatgagttgatgcttgatattaaatgtactgagcgttatgatagtttttgtgtatagtagtggttgttgtgttttttcctataaagaggtgcaagccaatcagctgtggttaataagccgatatgccgagtaactatctttttagattaagccgggctgctagacagggactccagaaatccatatctgggaaagaaagtgggctccaggattcggttgagattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="-" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="55988" stop="53923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55688" g_stop="55430" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55429" i_stop="54492" i_length="938">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54491" g_stop="54223" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="528" r_length="269" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="-" ref_id="SGN-E303296" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55688" e_stop="55430"/>
          <exon e_start="54491" e_stop="54223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTATTAGGGTTTGTTGGTTGGGGAAGATTAACTGTGAGCCCTTTAAGCTCAGCTCAAGAGAGAGAAAGAGAGAGGAGAGAGAAGCCTCTAACCTAACAAACTCTCAAGATTCATATGAAGGCAAATCAAGTTACATTTGGGGGCATTTAAAGAAACAAATTGTTTTGAGCTCTTAAGTTTTTTTATTTGTTTGTTTGTGATTTTATATGGATTTTGTCATCTGGGTGTTTGCTTCCTGCAATTATTATTCATAAAGGTGCGATCTTTGAACCCTTCTTGTTTGTTTTTGTAATGGGTAGTTGCTTAAAGCTCTGATCTTTTTCATTTGTTATTGAAAATTGTTGAGTTTGTGTGATTATTGTGTTTATTGTTCTCTTGGAGTTTGCATATACCTCCACGAGGTAGTGATAAAGGCCTAGTACACTCTATCCTCTCCAGATTTCATTAGGTATGTTGTCGTTATATAAAAGTGTGAAGTTTTGATCCCTTTATATATGTTTGTGTTTGCTTTGATTTTCGACGTCCATATGGTATAGGGTGATCTCTTTCTTATGTTTAACCTCTGCCTATATGAGCTTCACATTGCTGGGGTGAGATGTGGTCCTAAATTCTTGAGTATTTGAATGAAACATGCCCAAATAGAACGGATATACGAGATTTATATAAGTGATCCAACAAGATTAAGTTTAGAGAGAGTTTTGTTGGCTATTGGTGGTGTGGAAGTGTATTATTTGCGTTGATCGATGACGTGGATATTTGGGATTGACCACACTTATGTTGAGTTTCTTAGTAGTGGATATGGATCTTGGATTTCTATCAAAGAAAGTATTTATGGGAATGGATCAAGTTGAACCTGAATAGAGTGGTGTAGACATATCATGTATATAACCAATTCCAACTAATTTGGAATTGGGGTTATCTGATAATATTATGGTTCTTTATTCTTTTTCTATGAATGGGCTATGGCTTTAGATGATTAAGCAATAGTTTCTTCATAATATTTTTATTTAATTTAGTTGGTTTAGTATTTGTGTGGCTCTTCTTGATTAGTTTTAACTTAAAAATGAGATCAAATGATACTCTTCCGAACATAAACTACATATGCAATAATGTTTAATACTACTATTGAGTACAGTTAATTAACCAAAATATTCATGGTTTCTTTCTCATAATGTTCTCCTTCATCTTCAGTAGGTGTCTGGATTCTCAAAGTTATATTGGAGAAGGAGGGTAGTGCATGAGTTGATGCTTGATATTAAATGTACTGAGCGTTATGATAGTTTTTGTGTATAGTAGTGGTTGTTGTGTTTTTTCCTATAAAGAGGTGCAAGCCAATCAGCTGTGGTTAATAAGCCGATATGCCGAGTAACTATCTTTTTAGATTAAGCCGGGCTGCTAGACAGGGACTCCAGAAATCCATATCTGGGAAAGAAAGTGGGCTCCAGGATTCGGTTGAGATTTTG</genome_strand>
        <mrna_strand>TGATTATTAGGGTTTGTTGGTTGGGGAAGATTAACTGTGAGCCCTTTAAGCTCAGCTCAAGAGAGAGAAAGAGAGAGGAGAGAGAAGCCTCTAACCTAACAAACTCTCAAGATTCATATGAAGGCAAATCAAGTTACATTTGGGGGCATTTAAAGAAACAAATTGTTTTGAGCTCTTAAGTTTTTTTATTTGTTTGTTTGTGATTTTATATGGATTTTGTCATCTGGGTGTTTGCTTCCTGCAATTATTATTCATAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTGGATTCTCAAAGTTATATTGGAGAAGGAGGGTAGTGCATGAGTTGATGCTTGATATTAAATGTACTGAGCGTTATGATAGTTTTTGTGTATAGTAGTGGTTGTTGTGTTTTTTCCTATAAAGAGGTGCAAGCCAATCAGCTGTGGTTAATAAGCCGATATGCCGAGTAACTATCTTTTTAGATTAAGCCGGGCTGCTAGACAGGGACTCCAGAAATCCATATCTGGGAAAGAAAGTGGGCTCCAGGATTCGGTTGAGATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E359157" ref_strand="+" ref_description="SGN-E359157 [cLHT-11-G19]">
      <seq>tgattattagggtttgttggttggggaagattaactgagccctttaagctcagctcaagagagagaaagagagaggagagagaagcctctaacctaacaaattctcaagattcatatgaaggcaaatcaagtaacatttgggggcatttaaagaacaaattgttttgagctcttaagttttttatttgtttgtttgtgattttatatggattttgtcatctgggtgtttgcttcctgcaattattattcataaagtaggtgtctggattctcgaagttatattggagaaggggggtagtgcatgagttgatgcttgttactaaatgtactgagcgttatgatagtttttgtgtatagtagtggttgttgtgttttttcctataaagaggtgcaagctaatcagctgtggttaataagccgatatgccgagtaactatctttttagattaagccgggcagctagacagggactccagaaatccatatctgggaaagaaagtgggctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="-" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="55988" stop="53944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55688" g_stop="55430" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55429" i_stop="54495" i_length="935">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.842" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54494" g_stop="54244" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="506" r_length="251" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="-" ref_id="SGN-E359157" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55688" e_stop="55430"/>
          <exon e_start="54494" e_stop="54244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTATTAGGGTTTGTTGGTTGGGGAAGATTAACTGTGAGCCCTTTAAGCTCAGCTCAAGAGAGAGAAAGAGAGAGGAGAGAGAAGCCTCTAACCTAACAAACTCTCAAGATTCATATGAAGGCAAATCAAGTTACATTTGGGGGCATTTAAAGAAACAAATTGTTTTGAGCTCTTAAGTTTTTTTATTTGTTTGTTTGTGATTTTATATGGATTTTGTCATCTGGGTGTTTGCTTCCTGCAATTATTATTCATAAAGGTGCGATCTTTGAACCCTTCTTGTTTGTTTTTGTAATGGGTAGTTGCTTAAAGCTCTGATCTTTTTCATTTGTTATTGAAAATTGTTGAGTTTGTGTGATTATTGTGTTTATTGTTCTCTTGGAGTTTGCATATACCTCCACGAGGTAGTGATAAAGGCCTAGTACACTCTATCCTCTCCAGATTTCATTAGGTATGTTGTCGTTATATAAAAGTGTGAAGTTTTGATCCCTTTATATATGTTTGTGTTTGCTTTGATTTTCGACGTCCATATGGTATAGGGTGATCTCTTTCTTATGTTTAACCTCTGCCTATATGAGCTTCACATTGCTGGGGTGAGATGTGGTCCTAAATTCTTGAGTATTTGAATGAAACATGCCCAAATAGAACGGATATACGAGATTTATATAAGTGATCCAACAAGATTAAGTTTAGAGAGAGTTTTGTTGGCTATTGGTGGTGTGGAAGTGTATTATTTGCGTTGATCGATGACGTGGATATTTGGGATTGACCACACTTATGTTGAGTTTCTTAGTAGTGGATATGGATCTTGGATTTCTATCAAAGAAAGTATTTATGGGAATGGATCAAGTTGAACCTGAATAGAGTGGTGTAGACATATCATGTATATAACCAATTCCAACTAATTTGGAATTGGGGTTATCTGATAATATTATGGTTCTTTATTCTTTTTCTATGAATGGGCTATGGCTTTAGATGATTAAGCAATAGTTTCTTCATAATATTTTTATTTAATTTAGTTGGTTTAGTATTTGTGTGGCTCTTCTTGATTAGTTTTAACTTAAAAATGAGATCAAATGATACTCTTCCGAACATAAACTACATATGCAATAATGTTTAATACTACTATTGAGTACAGTTAATTAACCAAAATATTCATGGTTTCTTTCTCATAATGTTCTCCTTCATCTTCAGTAGGTGTCTGGATTCTCAAAGTTATATTGGAGAAGGAGGGTAGTGCATGAGTTGATGCTTGATATTAAATGTACTGAGCGTTATGATAGTTTTTGTGTATAGTAGTGGTTGTTGTGTTTTTTCCTATAAAGAGGTGCAAGCCAATCAGCTGTGGTTAATAAGCCGATATGCCGAGTAACTATCTTTTTAGATTAAGCCGGGCTGCTAGACAGGGACTCCAGAAATCCATATCTGGGAAAGAAAGTGGGCTC</genome_strand>
        <mrna_strand>TGATTATTAGGGTTTGTTGGTTGGGGAAGATTAAC--TGAGCCCTTTAAGCTCAGCTCAAGAGAGAGAAAGAGAGAGGAGAGAGAAGCCTCTAACCTAACAAATTCTCAAGATTCATATGAAGGCAAATCAAGTAACATTTGGGGGCATTTAAAG-AACAAATTGTTTTGAGCTCTTAAG-TTTTTTATTTGTTTGTTTGTGATTTTATATGGATTTTGTCATCTGGGTGTTTGCTTCCTGCAATTATTATTCATAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGTGTCTGGATTCTCGAAGTTATATTGGAGAAGGGGGGTAGTGCATGAGTTGATGCTTGTTACTAAATGTACTGAGCGTTATGATAGTTTTTGTGTATAGTAGTGGTTGTTGTGTTTTTTCCTATAAAGAGGTGCAAGCTAATCAGCTGTGGTTAATAAGCCGATATGCCGAGTAACTATCTTTTTAGATTAAGCCGGGCAGCTAGACAGGGACTCCAGAAATCCATATCTGGGAAAGAAAGTGGGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367587" ref_strand="+" ref_description="SGN-E367587 [cLPT-7-L22]">
      <seq>tcaagagagagaaagagagaggagagagaagcctctaacctaacaaattctcaagattcatatgaaggcaaatcaagtaacatttgggggcatttaaagaacaaattgttttgagctcttaagttttttatttgcttgtttgtgattttatatggatttcgtcatcttggtgtttgcttcctgcaattattattcataaagtaggtgtctggattctcgaagttatattggagaaagggggtagtgcatgagttgatgcttgttactaaatgtactgatcgttatgatagtttttgtgtatagtagtggttgttgcgttttatcctataaagaggtgcaagctaatcagctgtggtttataagccgatatgccgagtaactatctttttagattaagccgggcagcttgacagggactccacaaatccatatctgggaaagaaagtgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="-" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="55932" stop="53946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55632" g_stop="55430" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55429" i_stop="54495" i_length="935">
            <donor d_prob="0.849" d_score="0.96"/>
            <acceptor a_prob="0.842" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54494" g_stop="54246" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="450" r_length="249" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="-" ref_id="SGN-E367587" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55632" e_stop="55430"/>
          <exon e_start="54494" e_stop="54246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGAGAGAGAAAGAGAGAGGAGAGAGAAGCCTCTAACCTAACAAACTCTCAAGATTCATATGAAGGCAAATCAAGTTACATTTGGGGGCATTTAAAGAAACAAATTGTTTTGAGCTCTTAAGTTTTTTTATTTGTTTGTTTGTGATTTTATATGGATTTTGTCATCTGGGTGTTTGCTTCCTGCAATTATTATTCATAAAGGTGCGATCTTTGAACCCTTCTTGTTTGTTTTTGTAATGGGTAGTTGCTTAAAGCTCTGATCTTTTTCATTTGTTATTGAAAATTGTTGAGTTTGTGTGATTATTGTGTTTATTGTTCTCTTGGAGTTTGCATATACCTCCACGAGGTAGTGATAAAGGCCTAGTACACTCTATCCTCTCCAGATTTCATTAGGTATGTTGTCGTTATATAAAAGTGTGAAGTTTTGATCCCTTTATATATGTTTGTGTTTGCTTTGATTTTCGACGTCCATATGGTATAGGGTGATCTCTTTCTTATGTTTAACCTCTGCCTATATGAGCTTCACATTGCTGGGGTGAGATGTGGTCCTAAATTCTTGAGTATTTGAATGAAACATGCCCAAATAGAACGGATATACGAGATTTATATAAGTGATCCAACAAGATTAAGTTTAGAGAGAGTTTTGTTGGCTATTGGTGGTGTGGAAGTGTATTATTTGCGTTGATCGATGACGTGGATATTTGGGATTGACCACACTTATGTTGAGTTTCTTAGTAGTGGATATGGATCTTGGATTTCTATCAAAGAAAGTATTTATGGGAATGGATCAAGTTGAACCTGAATAGAGTGGTGTAGACATATCATGTATATAACCAATTCCAACTAATTTGGAATTGGGGTTATCTGATAATATTATGGTTCTTTATTCTTTTTCTATGAATGGGCTATGGCTTTAGATGATTAAGCAATAGTTTCTTCATAATATTTTTATTTAATTTAGTTGGTTTAGTATTTGTGTGGCTCTTCTTGATTAGTTTTAACTTAAAAATGAGATCAAATGATACTCTTCCGAACATAAACTACATATGCAATAATGTTTAATACTACTATTGAGTACAGTTAATTAACCAAAATATTCATGGTTTCTTTCTCATAATGTTCTCCTTCATCTTCAGTAGGTGTCTGGATTCTCAAAGTTATATTGGAGAAGGAGGGTAGTGCATGAGTTGATGCTTGATATTAAATGTACTGAGCGTTATGATAGTTTTTGTGTATAGTAGTGGTTGTTGTGTTTTTTCCTATAAAGAGGTGCAAGCCAATCAGCTGTGGTTAATAAGCCGATATGCCGAGTAACTATCTTTTTAGATTAAGCCGGGCTGCTAGACAGGGACTCCAGAAATCCATATCTGGGAAAGAAAGTGGGC</genome_strand>
        <mrna_strand>TCAAGAGAGAGAAAGAGAGAGGAGAGAGAAGCCTCTAACCTAACAAATTCTCAAGATTCATATGAAGGCAAATCAAGTAACATTTGGGGGCATTTAAAG-AACAAATTGTTTTGAGCTCTTAAG-TTTTTTATTTGCTTGTTTGTGATTTTATATGGATTTCGTCATCTTGGTGTTTGCTTCCTGCAATTATTATTCATAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGTGTCTGGATTCTCGAAGTTATATTGGAGAAAGGGGGTAGTGCATGAGTTGATGCTTGTTACTAAATGTACTGATCGTTATGATAGTTTTTGTGTATAGTAGTGGTTGTTGCGTTTTATCCTATAAAGAGGTGCAAGCTAATCAGCTGTGGTTTATAAGCCGATATGCCGAGTAACTATCTTTTTAGATTAAGCCGGGCAGCTTGACAGGGACTCCACAAATCCATATCTGGGAAAGAAAGTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="-" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="57281" stop="55659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56981" g_stop="56659" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="-" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56981" e_stop="56659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCCCGCTTTATACAAAAACAGAAACACAATATATACACTTCTATTGTATAAAGCTAGAAAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCTTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATCATATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAAAAATTATACACTTATGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="-" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="57281" stop="56385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56981" g_stop="56676" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="-" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56981" e_stop="56676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCCCGCTTTATACAAAAACAGAAACACAATATATACACTTCTATTGTATAAAGCTAGAAAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCTTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATCATATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAAAAATTATACACTTATG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAGGTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299911" ref_strand="+" ref_description="SGN-E299911 [cLEW-1-L18]">
      <seq>ggcacgaggcatcttctctcctcttcccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactgttatgcatgcatatgtacgagtagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67339" stop="68592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67630" g_stop="67979" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68292" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="570" r_length="220" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E299911" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67630" e_stop="67979"/>
          <exon e_start="68073" e_stop="68292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCAGTTTCATCTTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGAT</genome_strand>
        <mrna_strand>GGCACGAGGCATCTTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333114" ref_strand="+" ref_description="SGN-E333114 [cTOD-19-H19]">
      <seq>tttcatcttctctcctcttcccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactgttatgcatgcatatgtacgagtagataatcagactgtagagaaaagagaggatgtgtganggttctttattgttgtttgccggcctttgccatgccgggtgcgctcgcatggcaggtcacaaaacctaataaagatgcgatttttgtgttcggangggagatgggtacggggttttttgcccgactctcctctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67336" stop="68759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67636" g_stop="67979" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68459" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="733" r_length="389" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E333114" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67636" e_stop="67979"/>
          <exon e_start="68073" e_stop="68459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATCTTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGA-GGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCGGAGGGGAGAT-GGTACGGGGTTTTTTGCCCGACTCTCCTCTCT</genome_strand>
        <mrna_strand>TTTCATCTTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGANGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCGGANGGGAGATGGGTACGGGGTTTTTTGCCCGACTCTCCTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332257" ref_strand="+" ref_description="SGN-E332257 [cTOD-17-G8]">
      <seq>tttcatcttctctcctcttcccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactgttatgcatgcatatgtacgagtagataatcagactgtagagaaaagagaggatgtgtgaggttctttattgttgtttgccggcctttgccatgccgggtgcgctcgcatggcaggtcacaaaacctaataaagatgcgatttttgtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67336" stop="68715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67636" g_stop="67979" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68415" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="687" r_length="343" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E332257" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67636" e_stop="67979"/>
          <exon e_start="68073" e_stop="68415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATCTTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTT</genome_strand>
        <mrna_strand>TTTCATCTTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317753" ref_strand="+" ref_description="SGN-E317753 [cTOA-30-K19]">
      <seq>tttcatcttctctcctcttcccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactgttatgcatgcatatgtacgagtagataatcagactgtagagaaaagagaggatgtgtgaggttctttattgttgtttgccggcctttgccatgccgggtgcgctcgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67336" stop="68676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67636" g_stop="67979" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68376" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="648" r_length="304" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E317753" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67636" e_stop="67979"/>
          <exon e_start="68073" e_stop="68376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATCTTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATG</genome_strand>
        <mrna_strand>TTTCATCTTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333379" ref_strand="+" ref_description="SGN-E333379 [cTOD-20-I2]">
      <seq>tttcatcttctctcctcttcccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaattttgcattagttttactgttatgcatgcatatgtacgagtagataatcagactgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67336" stop="68603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67636" g_stop="67979" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68303" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="576" r_length="232" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E333379" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67636" e_stop="67979"/>
          <exon e_start="68073" e_stop="68303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATCTTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAA-TTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGT</genome_strand>
        <mrna_strand>TTTCATCTTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316100" ref_strand="+" ref_description="SGN-E316100 [cTOA-23-L21]">
      <seq>tttcatcttctctcctcttcccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactggtatgcatgcatatgtacgagtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67336" stop="68590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67636" g_stop="67979" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68290" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="562" r_length="218" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E316100" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67636" e_stop="67979"/>
          <exon e_start="68073" e_stop="68290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATCTTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAG</genome_strand>
        <mrna_strand>TTTCATCTTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGGTATGCATGCATATGTACGAGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331170" ref_strand="+" ref_description="SGN-E331170 [cTOD-6-L16]">
      <seq>tttcatcttctctcctcttcccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaagtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagctaggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaagttgttagataaagttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67336" stop="68565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67636" g_stop="67979" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68265" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="537" r_length="193" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E331170" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67636" e_stop="67979"/>
          <exon e_start="68073" e_stop="68265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATCTTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACT</genome_strand>
        <mrna_strand>TTTCATCTTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAAGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTAGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAAGTTGTTAGATAAAGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356486" ref_strand="+" ref_description="SGN-E356486 [cLHT-20-K24]">
      <seq>tttcatcttctctcctcttcccgcaatatctttcatctccagatctgctcatcgtcatttctctgcatctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatagtttcgacttgcatcggtcatcatttccttgcaaatcgtaacaaatagtgccgatctatcatttctgagattttttggtatgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggatttgttacgagattgagagatgtatgaccttttcaaggagttctcggagatctgagatgattttttgagttttatcggttatcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttcgatttatgctagatctctgggatggtaaacggcaagcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67336" stop="68487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67636" g_stop="67979" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68187" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="458" r_length="115" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E356486" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67636" e_stop="67979"/>
          <exon e_start="68073" e_stop="68187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATCTTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGA</genome_strand>
        <mrna_strand>TTTCATCTTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTGCTCATCGTCATTTCTCTGCATCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATAGTTTCGACTTGCATCGGTCATCATTTCCTTGCAAATCGTAACAAATAGTGCCGATCTATCATTTCTGAGATTTTTTGGTATGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGA-TTTGTTACGAGATTGAGAGATGTATGACCTTTTCAAGGAGTTCTCGGAGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTATCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCGATTTATGCTAGATCTCTGGGATGGTAAACGGCAAGCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316298" ref_strand="+" ref_description="SGN-E316298 [cTOA-23-L22]">
      <seq>tttcatcttctctcctcttcccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcggttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatgggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67336" stop="68475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67636" g_stop="67979" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68175" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="447" r_length="103" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E316298" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316298" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67636" e_stop="67979"/>
          <exon e_start="68073" e_stop="68175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATCTTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAA</genome_strand>
        <mrna_strand>TTTCATCTTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGGTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333155" ref_strand="+" ref_description="SGN-E333155 [cTOD-19-H20]">
      <seq>tttcatcttctctcctcttcccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcatgtataccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttaccagattgagagatgcctgacctttttcagaagttctcggtgatctgagatgattttttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67336" stop="68270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67636" g_stop="67970" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E333155" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67636" e_stop="67970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATCTTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGA</genome_strand>
        <mrna_strand>TTTCATCTTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCATGTATACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACCAGATTGAGAGATGCCTGACCTTTTTCAGAAGTTCTCGGTGATCTGAGATGATTTTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200800" ref_strand="+" ref_description="SGN-E200800 [cLEC-9-F15]">
      <seq>tcatcttctctcctcttcccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67338" stop="68403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67638" g_stop="67979" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68103" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="373" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E200800" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67638" e_stop="67979"/>
          <exon e_start="68073" e_stop="68103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACC</genome_strand>
        <mrna_strand>TCATCTTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331486" ref_strand="+" ref_description="SGN-E331486 [cTOD-9-M15]">
      <seq>catcttctctcctcttcccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcagatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggcaaacggcaagcttgaggttgttagataaggttatcatagtttaattcggtgtctattctcagcttaattatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67339" stop="68546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67639" g_stop="67979" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68246" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="515" r_length="174" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E331486" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67639" e_stop="67979"/>
          <exon e_start="68073" e_stop="68246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAA</genome_strand>
        <mrna_strand>CATCTTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAGATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGCAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGGTGTCTATTCTCAGCTTAATTATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730632" ref_strand="+" ref_description="SGN-E730632 [LA24CH04]">
      <seq>ctcttctctcctcttcccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactgttatgcatgcatatgtacgagtagataatcagactgtagagaaaagagaggatgtgtgaggttctttattgttgtttgccggcctttgccatgccgggtgcgctcgcatggcaggtcacaaaacctaataaagatgcgatttttgtgttcggaggggagatggtacggngttttttgcccgactctcctctctgtgtctgtctttggcctcctttcttttctagaactgtctgcaagatctattcagataaacgtctcatcaaatttggcgttaatgtccccgaacgatggtttcgatatccgcaaagttatagcagcgcctctacctttttcaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67341" stop="68902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67640" g_stop="67979" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68602" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="872" r_length="532" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E730632" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>870</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67640" e_stop="67979"/>
          <exon e_start="68073" e_stop="68602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCGGAGGGGAGATGGTACGGGGTTTTTTGCCCGACTCTCCTCTCTGTGTCTGTCTTTGGCCTCCTTTCTTTTCTAGAACTGTCTGCAAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCG-CTCTACC-TTTTCAATGG</genome_strand>
        <mrna_strand>CTCTTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCGGAGGGGAGATGGTACGGNGTTTTTTGCCCGACTCTCCTCTCTGTGTCTGTCTTTGGCCTCCTTTCTTTTCTAGAACTGTCTGCAAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCCTCTACCTTTTTCAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727852" ref_strand="+" ref_description="SGN-E727852 [LA15DG08]">
      <seq>atcttctctcctcttcccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactgttatgcatgcatatgtacgagtagataatcagactgtagagaaaagagaggatgtgtgaggttctttattgttgtttgccggcctttgccatgccgggtgcgctcgcatggcaggtcacaaaacctaataaagatgcgatttttgtgttcggaggggagatggtacggggttttttgcccgactctcctctctgtgtctgtctttggcctcctttcttttctagaactgtctgcaagatctattcagataaacgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67340" stop="68823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67640" g_stop="67979" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68523" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="791" r_length="451" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E727852" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67640" e_stop="67979"/>
          <exon e_start="68073" e_stop="68523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCGGAGGGGAGATGGTACGGGGTTTTTTGCCCGACTCTCCTCTCTGTGTCTGTCTTTGGCCTCCTTTCTTTTCTAGAACTGTCTGCAAGATCTATTCAGATAAACGTCT</genome_strand>
        <mrna_strand>ATCTTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCGGAGGGGAGATGGTACGGGGTTTTTTGCCCGACTCTCCTCTCTGTGTCTGTCTTTGGCCTCCTTTCTTTTCTAGAACTGTCTGCAAGATCTATTCAGATAAACGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367390" ref_strand="+" ref_description="SGN-E367390 [cLPT-7-M22]">
      <seq>tcttctctcctcttcccgcaatgggtttcatctccagatctgctcatcggtatttctctgcatctgaatcggtatgcagattcgtgtaaatcggtcgccgatctacagtttgagtatggtttcgacttgtatcgggcatcatttccttgcaaatcgtaacaaatagtgccgatctatcatttctgagatttttcggtatgaatattgctcgggttatggacgatgctgttggctagacgaagataggatagatctgatggatttgttacgagattgagagatgtatgaccttttcaaggagttctcggagatctgagatgattttttgagttttatcggttatcatcgtttcaatctggtgattttaccgtacctctgttgagcttggtgcaattggatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67341" stop="68435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67641" g_stop="67979" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68135" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="401" r_length="63" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E367390" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67641" e_stop="67979"/>
          <exon e_start="68073" e_stop="68135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATAT</genome_strand>
        <mrna_strand>TCTTCTCTCCTCTTCCCGCAATGGGTTTCATCTCCAGATCTGCTCATCGGTATTTCTCTGCATCTGAATCGGTATGCAGATTCGTGTAAATCGGTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGGCATCATTTCCTTGCAAATCGTAACAAATAGTGCCGATCTATCATTTCTGAGATTTTTCGGTATGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATAGGATAGATCTGATGGA-TTTGTTACGAGATTGAGAGATGTATGACCTTTTCAAGGAGTTCTCGGAGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTATCATCGTTTCAATCTGGTGATTTTACCGTACCTCTGTTGAGCTTGGTGCAATTGGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553644" ref_strand="+" ref_description="SGN-E553644 [cTSC-1-M14]">
      <seq>cttctctcctcttcccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactgttatgcatgcatatgtacgagtagataatcagactgtagagaaaagagaggatgtgtgaggttctttattgttgtttgccggcctttgccatgccgggtgcgctcgcatggcaggtcacaaaacctaataaagatgcgatttttgtgttcggaggggagatggtacggggttttttgcccgactctcctctctgtgtctgtctttggcctcctttcttttctagaactgtctgcaagatctattcagataaacgtctcatcaaatttggcgttaatgtccccgaacgatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67342" stop="68858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67642" g_stop="67979" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68558" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="824" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E553644" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67642" e_stop="67979"/>
          <exon e_start="68073" e_stop="68558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCGGAGGGGAGATGGTACGGGGTTTTTTGCCCGACTCTCCTCTCTGTGTCTGTCTTTGGCCTCCTTTCTTTTCTAGAACTGTCTGCAAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGT</genome_strand>
        <mrna_strand>CTTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCGGAGGGGAGATGGTACGGGGTTTTTTGCCCGACTCTCCTCTCTGTGTCTGTCTTTGGCCTCCTTTCTTTTCTAGAACTGTCTGCAAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E541798" ref_strand="+" ref_description="SGN-E541798 [TUS-62-M10]">
      <seq>cttctctcctcttcccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactgttatgcatgcatatgtacgagtagattaatcagactgtagagaaaagagaggatgtgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67342" stop="68624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67642" g_stop="67979" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68324" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="591" r_length="253" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E541798" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67642" e_stop="67979"/>
          <exon e_start="68073" e_stop="68324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGA-TAATCAGACTGTAGAGAAAAGAGAGGATGTGTG</genome_strand>
        <mrna_strand>CTTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATTAATCAGACTGTAGAGAAAAGAGAGGATGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E359063" ref_strand="+" ref_description="SGN-E359063 [cLHT-11-D17]">
      <seq>cttctctcttcttaccgcaatatctttcatctccagatctgctcatcgtcatttctctgcatctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatagtttcgacttgcatcggtcatcatttccttgcaaatcgtaacaaatagtgccgatctatcatttctgagattttttggtatgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggatttgttacgagattgagagatgtatgaccttttcaaggagttctcggtgatctaagatgattttttgagttttatcggttatcatcgtttcaatctggtgattttatcgcatctctgtagagcttggtgctattggatatcactggtgttcgatttatgctagatctcggggatggtaacgacaagcttgaggttgttagataaggttatcatagtttaatttgttgtctattctcagctgtattatgaaaatttgcgttagttttactgttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67342" stop="68571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67642" g_stop="67979" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68271" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="535" r_length="198" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E359063" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67642" e_stop="67979"/>
          <exon e_start="68073" e_stop="68271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATG</genome_strand>
        <mrna_strand>CTTCTCTCTTCTTACCGCAATATCTTTCATCTCCAGATCTGCTCATCGTCATTTCTCTGCATCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATAGTTTCGACTTGCATCGGTCATCATTTCCTTGCAAATCGTAACAAATAGTGCCGATCTATCATTTCTGAGATTTTTTGGTATGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGA-TTTGTTACGAGATTGAGAGATGTATGACCTTTTCAAGGAGTTCTCGGTGATCTAAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTATCATCGTTTCAATCTGGTGATTTTATCGCATCTCTGTAGAGCTTGGTGCTATTGGATATCACTGGTGTTCGATTTATGCTAGATCTCGGGGATGGT-AACGACAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTTGTTGTCTATTCTCAGCTGTATTATGAAAATTTGCGTTAGTTTTACTGTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325872" ref_strand="+" ref_description="SGN-E325872 [cTOC-12-P12]">
      <seq>cttctctccttttcccgtaatatctttcatctccagatctggttataggcatttttctgcttctgaatcggcatccacattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcaacttaattatgaaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67342" stop="68550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67642" g_stop="67979" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68250" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="516" r_length="178" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E325872" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67642" e_stop="67979"/>
          <exon e_start="68073" e_stop="68250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATT</genome_strand>
        <mrna_strand>CTTCTCTCCTTTTCCCGTAATATCTTTCATCTCCAGATCTGGTTATAGGCATTTTTCTGCTTCTGAATCGGCATCCACATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAACTTAATTATGAAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299541" ref_strand="+" ref_description="SGN-E299541 [cLEW-20-A22]">
      <seq>ttctctcctcttcccgcaatatctttcatctccagatctcgttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggtatgtcatgcactattaatacaacaatggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67343" stop="68939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67643" g_stop="67979" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68201" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="466" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68202" i_stop="68606" i_length="405">
            <donor d_prob="0.897" d_score="1.00"/>
            <acceptor a_prob="0.104" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68607" g_stop="68639" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="499" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E299541" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67643" e_stop="67979"/>
          <exon e_start="68073" e_stop="68201"/>
          <exon e_start="68607" e_stop="68639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCGGAGGGGAGATGGTACGGGGTTTTTTGCCCGACTCTCCTCTCTGTGTCTGTCTTTGGCCTCCTTTCTTTTCTAGAACTGTCTGCAAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACA</genome_strand>
        <mrna_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCGTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTCATGCACTATTAATACAACAATGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705487" ref_strand="+" ref_description="SGN-E705487 [FA27BB09]">
      <seq>ttctctcctcttcccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactgttatgcatgcatatgtacgagtagataatcagactgtagagaaaagagaggatgtgtgaggttctttattgttgtttgccggcctttgccatgccgggtgcgctcgcatggcaggtcacaaaaccctaataaagatgcgatttttgtgttcggaggggagatggtacggggttttttgcccgactctcctctctgtgtctgtctttggcctcctttctttttctagaactgtctgcaagatctattcagaataacgtctcatccaatttggcgttaatgtccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67343" stop="68847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67643" g_stop="67979" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68547" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="814" r_length="477" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E705487" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67643" e_stop="67979"/>
          <exon e_start="68073" e_stop="68547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAA-CCTAATAAAGATGCGATTTTTGTGTTCGGAGGGGAGATGGTACGGGGTTTTTTGCCCGACTCTCCTCTCTGTGTCTGTCTTTGGCCTCCTTTC-TTTTCTAGAACTGTCTGCAAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCC</genome_strand>
        <mrna_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCCTAATAAAGATGCGATTTTTGTGTTCGGAGGGGAGATGGTACGGGGTTTTTTGCCCGACTCTCCTCTCTGTGTCTGTCTTTGGCCTCCTTTCTTTTTCTAGAACTGTCTGCAAGATCTATTCAGAATAACGTCTCATCCAATTTGGCGTTAATGTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334700" ref_strand="+" ref_description="SGN-E334700 [cTOD-23-H12]">
      <seq>ttctctcctcttcccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactgttatgcatgcatatgtacgagtagataatcagactgtanagaaaagagaggatgtgtgaggttctttattgttgtttgccggcctttgccatgccgggtgcgctcgcatggcaggtcacaaaacctaataaagatgcgatttttgtggttcggagggagatggtacnggggttttttgcccgactctcctctctgtgtctgtctttggcctcctttcttttctagaactgtctgcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67343" stop="68803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67643" g_stop="67979" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68503" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="769" r_length="432" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E334700" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67643" e_stop="67979"/>
          <exon e_start="68073" e_stop="68503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGT-GTTCGGAGGGGAGATGGTAC-GGGGTTTTTTGCCCGACTCTCCTCTCTGTGTCTGTCTTTGGCCTCCTTTCTTTTCTAGAACTGTCTGCAAG</genome_strand>
        <mrna_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTANAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGGTTCGGA-GGGAGATGGTACNGGGGTTTTTTGCCCGACTCTCCTCTCTGTGTCTGTCTTTGGCCTCCTTTCTTTTCTAGAACTGTCTGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315735" ref_strand="+" ref_description="SGN-E315735 [cTOA-26-C12]">
      <seq>ttctctcctcttcccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactgttatgcatgcatatgtacgagtagataatcagactgtagagaaaagagaggatgtgtgaggttctttattgttgtttgccggcctttgccatgccgggtgcgctcgcatggcaggtcacaaaacctaataaagatgcgatttttgtgttcgganggganatggntacggggttttttgcccgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67343" stop="68750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67643" g_stop="67979" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68450" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="716" r_length="379" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E315735" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67643" e_stop="67979"/>
          <exon e_start="68073" e_stop="68450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCGGAGGGGAGATGG-TACGGGGTTTTTTGCCCGACT</genome_strand>
        <mrna_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCGGANGGGANATGGNTACGGGGTTTTTTGCCCGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345031" ref_strand="+" ref_description="SGN-E345031 [cTOF-22-B14]">
      <seq>ttctctcctcttcccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactgttatgcatgcatatgtacgagtagataatcagactgtagagaaaagagaggatgtgtgaggttctttattgttgtttgccggcctttgccatgccgggtgcgctcgcatggcaggtcacaaaacctaataaagatgcgatttttgtgttcngagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67343" stop="68723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67643" g_stop="67979" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68423" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="688" r_length="351" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E345031" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67643" e_stop="67979"/>
          <exon e_start="68073" e_stop="68423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCGGAGGGG</genome_strand>
        <mrna_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCNGAGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325558" ref_strand="+" ref_description="SGN-E325558 [cTOC-15-G18]">
      <seq>ttctctcctcttcccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactgttatgcatgcatatgtacgagtagataatcagactgtagagaaaagagaggatgtgtgaggttctttattgttgtttgccggcctttgccatgccgggtgcgctcgcatggcaggtcacaaaacctaataaagatgcgatttttgtgttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67343" stop="68717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67643" g_stop="67979" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68417" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="682" r_length="345" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E325558" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67643" e_stop="67979"/>
          <exon e_start="68073" e_stop="68417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCG</genome_strand>
        <mrna_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315845" ref_strand="+" ref_description="SGN-E315845 [cTOA-26-G17]">
      <seq>ttctctcctcttcccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactgttatgcatgcatatgtacgagtagataatcagactgtagagaaaagagaggatgtgtgagggtctttattgttgtttgccggcctttgccatgccgggtgcgctcgcatggcaggtcacaaaacctaataaagatgcgatttttgtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67343" stop="68715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67643" g_stop="67979" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68415" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="680" r_length="343" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E315845" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67643" e_stop="67979"/>
          <exon e_start="68073" e_stop="68415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTT</genome_strand>
        <mrna_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGGTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327490" ref_strand="+" ref_description="SGN-E327490 [cTOC-19-H12]">
      <seq>ttctctcctcttcccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactgttatgcatgcatatgtacgagtagataatcagactgtagagaaaagagaggatgtgtgaggttctttattggtgtttgccggcctttgccatgccgggtgcgctcgcatggcaggtcacaaaacctataaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67343" stop="68701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67643" g_stop="67979" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68401" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="665" r_length="328" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E327490" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67643" e_stop="67979"/>
          <exon e_start="68073" e_stop="68401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGAT</genome_strand>
        <mrna_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGGTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCT-ATAAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329903" ref_strand="+" ref_description="SGN-E329903 [cTOD-5-E5]">
      <seq>ttctctcctcttcccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactgttatgcatgcatatgtacgagtagataatcagactgtagagaaaagagaggatgtgtgaggttctttattgttgtttgccggcctttgccatgccgggtgcgctcgcatggcaggtcacaaaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67343" stop="68692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67643" g_stop="67979" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68392" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="657" r_length="320" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E329903" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67643" e_stop="67979"/>
          <exon e_start="68073" e_stop="68392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCT</genome_strand>
        <mrna_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327486" ref_strand="+" ref_description="SGN-E327486 [cTOC-19-F14]">
      <seq>ttctctcctcttcccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactgttatgcatgcatatgtacgagtagataatcagactgtagagaaaagagaggatgtgtganggtctttattgttgtttgccggccttgccatgccgggtgcgctcgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67343" stop="68676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67643" g_stop="67979" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68376" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="640" r_length="303" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E327486" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67643" e_stop="67979"/>
          <exon e_start="68073" e_stop="68376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATG</genome_strand>
        <mrna_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGANGGTCTTTATTGTTGTTTGCCGGCC-TTGCCATGCCGGGTGCGCTCGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358966" ref_strand="+" ref_description="SGN-E358966 [cLHT-24-N1]">
      <seq>ttctctcctcttaccgcaatatctttcatctccagatctgctcatcgtcatttctctgcatctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatagtttcgacttgcatcggtcatcatttccttgcaaatcgtaacaaatagtgccgatctatcatttctgagattttttggtatgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggatttgttacgagattgagagatgtatgaccttttcaaggagttctcggtgatctaagatgattttttgagttttatcggttatcatcgtttcaatctggtgattttatcgcatctctgtagagcttggtgctattggatatcactggtgttcgatttatgctagatctcggggatggtaacgacaagcttgaggttgttagataaggttatcatagtttaatttgttgtctattctcagctttattatgaaaatttgcgttagttttactgttatgcatgcatatgtacgagaaaataatcagattgtagagaaaagagaggatgtgtgaggttctttattgttgtttgccggcctttgccatgccgggtgcgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67343" stop="68670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67643" g_stop="67979" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68370" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="633" r_length="297" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E358966" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67643" e_stop="67979"/>
          <exon e_start="68073" e_stop="68370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCT</genome_strand>
        <mrna_strand>TTCTCTCCTCTTACCGCAATATCTTTCATCTCCAGATCTGCTCATCGTCATTTCTCTGCATCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATAGTTTCGACTTGCATCGGTCATCATTTCCTTGCAAATCGTAACAAATAGTGCCGATCTATCATTTCTGAGATTTTTTGGTATGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGA-TTTGTTACGAGATTGAGAGATGTATGACCTTTTCAAGGAGTTCTCGGTGATCTAAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTATCATCGTTTCAATCTGGTGATTTTATCGCATCTCTGTAGAGCTTGGTGCTATTGGATATCACTGGTGTTCGATTTATGCTAGATCTCGGGGATGGT-AACGACAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTTGTTGTCTATTCTCAGCTTTATTATGAAAATTTGCGTTAGTTTTACTGTTATGCATGCATATGTACGAGAAAATAATCAGATTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268862" ref_strand="+" ref_description="SGN-E268862 [cLEM-4-N8]">
      <seq>ttctctcctcttcccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactgttatgcatgcatatgtacgagtagataatcagactgtagagaaaagagaggatgtgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67343" stop="68624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67643" g_stop="67979" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68324" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="589" r_length="252" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E268862" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67643" e_stop="67979"/>
          <exon e_start="68073" e_stop="68324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTG</genome_strand>
        <mrna_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330125" ref_strand="+" ref_description="SGN-E330125 [cTOD-5-F5]">
      <seq>ttctctcctcttcccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactgttatgcatgcatatgtacgagtagataatcagactgtngagaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67343" stop="68612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67643" g_stop="67979" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68312" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="577" r_length="240" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E330125" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67643" e_stop="67979"/>
          <exon e_start="68073" e_stop="68312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAG</genome_strand>
        <mrna_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTNGAGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272786" ref_strand="+" ref_description="SGN-E272786 [cLEM-21-H24]">
      <seq>ttctctcctcttcccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactgttatgcatgcatatgtacgagtagataatcagactgtagagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67343" stop="68610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67643" g_stop="67979" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68310" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="575" r_length="238" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E272786" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67643" e_stop="67979"/>
          <exon e_start="68073" e_stop="68310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAA</genome_strand>
        <mrna_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318691" ref_strand="+" ref_description="SGN-E318691 [cTOB-9-G8]">
      <seq>ttctctcctcttcccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttaccagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgaatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagattaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactgttatgcatgcatatgtacgagtagataatcagact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67343" stop="68601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67643" g_stop="67979" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68301" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="566" r_length="229" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E318691" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67643" e_stop="67979"/>
          <exon e_start="68073" e_stop="68301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACT</genome_strand>
        <mrna_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACCAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGAATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGATTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259456" ref_strand="+" ref_description="SGN-E259456 [cLEG-42-G3]">
      <seq>ttctctcctcttcccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactgttatgcatgcatatgtacgagtagataatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67343" stop="68596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67643" g_stop="67979" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68296" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="561" r_length="224" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E259456" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67643" e_stop="67979"/>
          <exon e_start="68073" e_stop="68296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATC</genome_strand>
        <mrna_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212525" ref_strand="+" ref_description="SGN-E212525 [cLEC-74-G12]">
      <seq>ttctctcctcttcccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactggtatgcatgcatatgtacgagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67343" stop="68589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67643" g_stop="67979" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68289" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="554" r_length="217" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E212525" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67643" e_stop="67979"/>
          <exon e_start="68073" e_stop="68289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTA</genome_strand>
        <mrna_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGGTATGCATGCATATGTACGAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312751" ref_strand="+" ref_description="SGN-E312751 [cTOA-8-M18]">
      <seq>ttctctcctcttcccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactgttatgcatgcatatgtacgagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67343" stop="68589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67643" g_stop="67979" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68289" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="554" r_length="217" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E312751" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67643" e_stop="67979"/>
          <exon e_start="68073" e_stop="68289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTA</genome_strand>
        <mrna_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331202" ref_strand="+" ref_description="SGN-E331202 [cTOD-6-G19]">
      <seq>ttctctcctcttcccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactgttatgcatgcatatgtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67343" stop="68584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67643" g_stop="67979" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68284" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="549" r_length="212" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E331202" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67643" e_stop="67979"/>
          <exon e_start="68073" e_stop="68284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTAC</genome_strand>
        <mrna_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338603" ref_strand="+" ref_description="SGN-E338603 [cTOE-15-K6]">
      <seq>ttctctcctcttcccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactgttatgcatgcatatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67343" stop="68583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67643" g_stop="67979" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68283" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="548" r_length="211" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E338603" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67643" e_stop="67979"/>
          <exon e_start="68073" e_stop="68283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTA</genome_strand>
        <mrna_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330126" ref_strand="+" ref_description="SGN-E330126 [cTOD-5-F7]">
      <seq>ttctcttttcttcccgcaatatctttcatctccagagctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttggctattctcagcttaattatgaaaatttgcattaattttactgttatgcatgcatatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67343" stop="68582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67643" g_stop="67979" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68282" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="547" r_length="210" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E330126" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67643" e_stop="67979"/>
          <exon e_start="68073" e_stop="68282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGT</genome_strand>
        <mrna_strand>TTCTCTTTTCTTCCCGCAATATCTTTCATCTCCAGAGCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGGCTATTCTCAGCTTAATTATGAAAATTTGCATTAATTTTACTGTTATGCATGCATATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319068" ref_strand="+" ref_description="SGN-E319068 [cTOB-14-P1]">
      <seq>ttctctcctcttcccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactgttatgcatgcatatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67343" stop="68582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67643" g_stop="67979" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68282" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="547" r_length="210" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E319068" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67643" e_stop="67979"/>
          <exon e_start="68073" e_stop="68282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGT</genome_strand>
        <mrna_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299670" ref_strand="+" ref_description="SGN-E299670 [cLEW-1-M11]">
      <seq>ttctctcctcttcccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttggtagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactgttatgcatgcatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67343" stop="68581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67643" g_stop="67979" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68281" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="546" r_length="209" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E299670" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67643" e_stop="67979"/>
          <exon e_start="68073" e_stop="68281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATG</genome_strand>
        <mrna_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGGTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E300104" ref_strand="+" ref_description="SGN-E300104 [cLEW-11-M4]">
      <seq>ttctctcctcttcccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactgttatgcatgcatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67343" stop="68581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67643" g_stop="67979" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68281" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="546" r_length="209" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E300104" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67643" e_stop="67979"/>
          <exon e_start="68073" e_stop="68281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATG</genome_strand>
        <mrna_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317578" ref_strand="+" ref_description="SGN-E317578 [cTOB-8-C15]">
      <seq>ttctctcctcttcccgcaatatctgtcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagcttaattcgttggctattctcagcttaattatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67343" stop="68546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67643" g_stop="67979" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68246" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="511" r_length="174" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E317578" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67643" e_stop="67979"/>
          <exon e_start="68073" e_stop="68246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAA</genome_strand>
        <mrna_strand>TTCTCTCCTCTTCCCGCAATATCTGTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGCTTAATTCGTTGGCTATTCTCAGCTTAATTATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E359137" ref_strand="+" ref_description="SGN-E359137 [cLHT-11-P8]">
      <seq>ttctctctttttaccgcaatatctttcatctccagatctgctcatcgtcatttctctgcatctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatagtttcgacttgcatcggtcatcatttccttgcaaatcgtaacaaatagtgccgatctatcatttctgagattttttggtatgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggatttgttacgagattgagagatgtatgaccttttaaaggagttctcggcgatctaagatgatcccccgagttttatcggttatcatcgtttcaatctggagattctatcgcatctctgtagagcttggtgctattggatctcactggtgttcgatgcatgctagatctcggggatggttacgacaagcttgaggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67343" stop="68491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67643" g_stop="67979" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="0.82"/>
            <acceptor a_prob="0.997" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68191" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="454" r_length="118" r_score="0.891"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E359137" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67643" e_stop="67979"/>
          <exon e_start="68073" e_stop="68191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTT</genome_strand>
        <mrna_strand>TTCTCTCTTTTTACCGCAATATCTTTCATCTCCAGATCTGCTCATCGTCATTTCTCTGCATCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATAGTTTCGACTTGCATCGGTCATCATTTCCTTGCAAATCGTAACAAATAGTGCCGATCTATCATTTCTGAGATTTTTTGGTATGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGA-TTTGTTACGAGATTGAGAGATGTATGACCTTTTAAAGGAGTTCTCGGCGATCTAAGATGATCCCCCGAGTTTTATCG.............................................................................................GTTATCATCGTTTCAATCTGGAGATTCTATCGCATCTCTGTAGAGCTTGGTGCTATTGGATCTCACTGGTGTTCGATGCATGCTAGATCTCGGGGATGGT-TACGACAAGCTTGAGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299502" ref_strand="+" ref_description="SGN-E299502 [cLEW-20-A9]">
      <seq>ttctctcctcttcccgcaatatctttcatctccagaggtccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67343" stop="68484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67643" g_stop="67979" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68177" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="442" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E299502" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67643" e_stop="67979"/>
          <exon e_start="68073" e_stop="68177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACG</genome_strand>
        <mrna_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGAGGTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323360" ref_strand="+" ref_description="SGN-E323360 [cTOC-10-E1]">
      <seq>ttctctcctcttcccgcaatatctttcatctccagatcgccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtaaagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggctagcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67343" stop="68486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67643" g_stop="67979" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68177" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="442" r_length="105" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E323360" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67643" e_stop="67979"/>
          <exon e_start="68073" e_stop="68177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACG</genome_strand>
        <mrna_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCGCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAAAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301290" ref_strand="+" ref_description="SGN-E301290 [cLEW-24-F8]">
      <seq>ttctctcctcttcccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67343" stop="68469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67643" g_stop="67979" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68169" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="434" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E301290" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67643" e_stop="67979"/>
          <exon e_start="68073" e_stop="68169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGAT</genome_strand>
        <mrna_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E361360" ref_strand="+" ref_description="SGN-E361360 [cLPP-6-M3]">
      <seq>ttctctcctcttcccgcaatatctttcatctccagatctgctcatcgttatttctctgcatctgaatcggtatgcagattcgtgtaaatcgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccttgcaaatcgtaacaaatagtgccgatctatcatttctgagatttttcggtatgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggatttgttacgagattgagagatgtatgaccttttcaaggagttctcggtgatctgagatgattttttgagttttatcggttatcatcgtttcaatctggtgattttaccgtacctctgttgagcttggtgcaattggatatcagtggtgttagatttatgctag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67343" stop="68458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67643" g_stop="67979" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68158" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="422" r_length="86" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E361360" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67643" e_stop="67979"/>
          <exon e_start="68073" e_stop="68158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAG</genome_strand>
        <mrna_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTGCTCATCGTTATTTCTCTGCATCTGAATCGGTATGCAGATTCGTGTAAATCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCTTGCAAATCGTAACAAATAGTGCCGATCTATCATTTCTGAGATTTTTCGGTATGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGA-TTTGTTACGAGATTGAGAGATGTATGACCTTTTCAAGGAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTATCATCGTTTCAATCTGGTGATTTTACCGTACCTCTGTTGAGCTTGGTGCAATTGGATATCAGTGGTGTTAGATTTATGCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317686" ref_strand="+" ref_description="SGN-E317686 [cTOB-8-C16]">
      <seq>ttctctcctcttcctgcaatatctgggatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67370" stop="68286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67643" g_stop="67979" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68080" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="345" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E317686" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67643" e_stop="67979"/>
          <exon e_start="68073" e_stop="68080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCAT</genome_strand>
        <mrna_strand>TTCTCTCCTCTTCCTGCAATATCTGGGATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336809" ref_strand="+" ref_description="SGN-E336809 [cTOE-5-D13]">
      <seq>ttctctcctcttcccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaaaattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67343" stop="68270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67643" g_stop="67970" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E336809" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67643" e_stop="67970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGA</genome_strand>
        <mrna_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAAATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203606" ref_strand="+" ref_description="SGN-E203606 [cLEC-15-B13]">
      <seq>ttctctcctcttcccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67343" stop="68223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67643" g_stop="67923" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E203606" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>281</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67643" e_stop="67923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGAT</genome_strand>
        <mrna_strand>TTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307275" ref_strand="+" ref_description="SGN-E307275 [cLEY-12-G20]">
      <seq>ctctcctcttcccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcagttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactgttatgcatgcatatgtacgagtagataatcagactggtgagaaaagagaggatgtgtgaggttctttattgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67345" stop="68639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67645" g_stop="67979" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68339" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="602" r_length="267" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E307275" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67645" e_stop="67979"/>
          <exon e_start="68073" e_stop="68339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTT</genome_strand>
        <mrna_strand>CTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCA.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGGTGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315223" ref_strand="+" ref_description="SGN-E315223 [cTOA-24-A13]">
      <seq>tctcctcttcccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactgttatgcatgcatatgtacgagtagataatcagactgtagagaaaagagaggatgtgtgaggttctttattgttgtttgccggcctttgccatgccgggtgcgctcgcatggcaggtcacaaaacctaataaagatgcgatttttgtgttcgggagggagatggtacggggttttttgccgactctcctctctgtgtctgtctttggcctcctttcttttctagactgtctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67346" stop="68800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67646" g_stop="67979" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68500" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="760" r_length="426" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E315223" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67646" e_stop="67979"/>
          <exon e_start="68073" e_stop="68500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCGGAGGGGAGATGGTACGGGGTTTTTTGCCCGACTCTCCTCTCTGTGTCTGTCTTTGGCCTCCTTTCTTTTCTAGAACTGTCTGC</genome_strand>
        <mrna_strand>TCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCGGGAGGGAGATGGTACGGGGTTTTTTG-CCGACTCTCCTCTCTGTGTCTGTCTTTGGCCTCCTTTCTTTTCTAG-ACTGTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345594" ref_strand="+" ref_description="SGN-E345594 [cTOF-18-G17]">
      <seq>tctcctcttcccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactgttatgcatgcatatgtacgagtagataatcagactgtagagaaaagagaggatgtgtgaggttctttattgttgtttgccggcctttgccatgccgggtgcgctcgcatggcangtcacaaaacctaataaagatgcgattttttgtgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67346" stop="68716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67646" g_stop="67979" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68416" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="679" r_length="345" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E345594" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67646" e_stop="67979"/>
          <exon e_start="68073" e_stop="68416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGA-TTTTTGTGTTC</genome_strand>
        <mrna_strand>TCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCANGTCACAAAACCTAATAAAGATGCGATTTTTTGTGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328507" ref_strand="+" ref_description="SGN-E328507 [cTOC-23-M19]">
      <seq>tctcctcttcccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactgttatgcatgcatatgtacgagtagataatcagactgtagagaaaagagaggatgtgtgaggttctttattgttgtttgccggcctttgccatgccgggtgcgctcgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67346" stop="68674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67646" g_stop="67979" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68374" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="636" r_length="302" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E328507" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67646" e_stop="67979"/>
          <exon e_start="68073" e_stop="68374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCA</genome_strand>
        <mrna_strand>TCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329985" ref_strand="+" ref_description="SGN-E329985 [cTOD-5-N17]">
      <seq>tctcctcttcccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactgttatgcatgcatatgtacgagtagataatcagactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67346" stop="68602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67646" g_stop="67979" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68302" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="564" r_length="230" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E329985" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67646" e_stop="67979"/>
          <exon e_start="68073" e_stop="68302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTG</genome_strand>
        <mrna_strand>TCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324829" ref_strand="+" ref_description="SGN-E324829 [cTOC-11-A10]">
      <seq>tctcctcttcccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaagttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67346" stop="68565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67646" g_stop="67979" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68265" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="527" r_length="193" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E324829" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67646" e_stop="67979"/>
          <exon e_start="68073" e_stop="68265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACT</genome_strand>
        <mrna_strand>TCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAAGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331162" ref_strand="+" ref_description="SGN-E331162 [cTOD-6-J10]">
      <seq>tctcctcttcccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaagttgttagataaggttatcataggttaattcgttgtctattctcagcttaattatgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67346" stop="68547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67646" g_stop="67979" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68247" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="509" r_length="175" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E331162" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67646" e_stop="67979"/>
          <exon e_start="68073" e_stop="68247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAA</genome_strand>
        <mrna_strand>TCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAAGTTGTTAGATAAGGTTATCATAGGTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366044" ref_strand="+" ref_description="SGN-E366044 [cLPT-15-G14]">
      <seq>tctcctcttcccgcaatatctttcatctccagatctgctcatcgttatttctctgcatctgaatcggtatgcagattcgtgtaaatcgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccttgcaaatcgtaacaaatagtgccgatctatcatttctgagatttttcggtatgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggatttgttacgagattgagagatgtatgaccttttcaaggagttctcggtgatctgagatgattttttgagttttatcggttatcatcgtttcaatctggtgattttaccgtacctctgttgagcttggtgcaattggatatcagtggtgttagatttatgctagatctcggggatggtaacgacaagcttgaggttgttagataaggttatcatagtttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67346" stop="68517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67646" g_stop="67979" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68217" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="477" r_length="144" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E366044" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67646" e_stop="67979"/>
          <exon e_start="68073" e_stop="68217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAAT</genome_strand>
        <mrna_strand>TCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTGCTCATCGTTATTTCTCTGCATCTGAATCGGTATGCAGATTCGTGTAAATCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCTTGCAAATCGTAACAAATAGTGCCGATCTATCATTTCTGAGATTTTTCGGTATGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGA-TTTGTTACGAGATTGAGAGATGTATGACCTTTTCAAGGAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTATCATCGTTTCAATCTGGTGATTTTACCGTACCTCTGTTGAGCTTGGTGCAATTGGATATCAGTGGTGTTAGATTTATGCTAGATCTCGGGGATGGT-AACGACAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E300721" ref_strand="+" ref_description="SGN-E300721 [cLEW-8-K16]">
      <seq>tctcctcttcccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctcgacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagatttatcggttgacatcgtttcaatctggtgattttaccgcatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcgggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67346" stop="68468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67646" g_stop="67979" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68168" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="430" r_length="96" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E300721" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67646" e_stop="67979"/>
          <exon e_start="68073" e_stop="68168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGA</genome_strand>
        <mrna_strand>TCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTCGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGATTTATCG.............................................................................................GTTGACATCGTTTCAATCTGGTGATTTTACCGCATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319361" ref_strand="+" ref_description="SGN-E319361 [cTOB-15-A2]">
      <seq>tctcctcttcccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcgggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67346" stop="68468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67646" g_stop="67979" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68168" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="430" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E319361" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67646" e_stop="67979"/>
          <exon e_start="68073" e_stop="68168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGA</genome_strand>
        <mrna_strand>TCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299997" ref_strand="+" ref_description="SGN-E299997 [cLEW-11-O16]">
      <seq>tctcctctttccgcaatatctttcatctggggatcgggttataagcatttctctgcttctgaatcggtatgcacattcatgtagaccgttcgccgatctacagtttgagtatggtttctacttgtatcggtcatcatcttgcgtgcaaatcgtaacagatagtgccgatttatcatctctgaggtattgctgaactaatattgctcgggttatggacgatgctgatggctagacgaagattggatacatctgatggattttgctacgagattgaaagatgcatgaccttttcaagaagttctcggtgatctgagatgattgtttgagttttatcgggtgtgatcgtctcaatctggtgattgtaccgtatctctgtagagctcggtgcaattggatatcactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67346" stop="68440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67646" g_stop="67979" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68140" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="403" r_length="68" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E299997" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67646" e_stop="67979"/>
          <exon e_start="68073" e_stop="68140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCAT-TTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTG</genome_strand>
        <mrna_strand>TCTCCTCTTTCCGCAATATCTTTCATCTGGGGATCGGGTTATAAGCATTTCTCTGCTTCTGAATCGGTATGCACATTCATGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCTACTTGTATCGGTCATCATCTTGCGTGCAAATCGTAACAGATAGTGCCGATTTATCATCTCTGAGGTATTGCTGAACTAATATTGCTCGGGTTATGGACGATGCTGATGGCTAGACGAAGATTGGATACATCTGATGGATTTTGCTACGAGATTGAAAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTGTTTGAGTTTTATCG.............................................................................................GGTGTGATCGTCTCAATCTGGTGATTGTACCGTATCTCTGTAGAGCTCGGTGCAATTGGATATCACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358818" ref_strand="+" ref_description="SGN-E358818 [cLHT-24-N13]">
      <seq>ctcctcttaccgcaatatctttcatctccagatctgctcatcgtcatttctctgcatctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatagtttcgacttgcatcggtcatcatttccttgcaaatcgtaacaaatagtgccgatctatcatttctgagattttttggtatgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggatttgttacgagattgagagatgtatgaccttttcaaggagttctcggtgatctaagatgattttttgagttttatcggttatcatcgtttcaatctggtgattttatcgcatctctgtagagcttggtgctattggatatcactggtgttcgatttatgctagatctcggggatggtaacgacaagcttgaggttgttagataaggttatcatagtttaatttgttgtctattctcagctttattatgaaaatttgcgttagttttactgttatgcatgcatatgtacgagaaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67347" stop="68593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67647" g_stop="67979" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68293" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="552" r_length="220" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E358818" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67647" e_stop="67979"/>
          <exon e_start="68073" e_stop="68293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATA</genome_strand>
        <mrna_strand>CTCCTCTTACCGCAATATCTTTCATCTCCAGATCTGCTCATCGTCATTTCTCTGCATCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATAGTTTCGACTTGCATCGGTCATCATTTCCTTGCAAATCGTAACAAATAGTGCCGATCTATCATTTCTGAGATTTTTTGGTATGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGA-TTTGTTACGAGATTGAGAGATGTATGACCTTTTCAAGGAGTTCTCGGTGATCTAAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTATCATCGTTTCAATCTGGTGATTTTATCGCATCTCTGTAGAGCTTGGTGCTATTGGATATCACTGGTGTTCGATTTATGCTAGATCTCGGGGATGGT-AACGACAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTTGTTGTCTATTCTCAGCTTTATTATGAAAATTTGCGTTAGTTTTACTGTTATGCATGCATATGTACGAGAAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326855" ref_strand="+" ref_description="SGN-E326855 [cTOC-25-A12]">
      <seq>tcctcttcccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactgttatgcatgcatatgtacgagtagataatcagactgtagagaaaagagaggatgtgtgaggttctttattgttgtttgccggcctttgccatgccgggtgcgctcgcatggcaggtcacaaaacctaataaagatgcgatttttgtgttcggaggggagatggtacggggttttttgcccgactctcctctctgtgtctgtctttggcctcctttcttttctagaactgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67348" stop="68798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67648" g_stop="67979" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68498" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="758" r_length="426" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E326855" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67648" e_stop="67979"/>
          <exon e_start="68073" e_stop="68498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCGGAGGGGAGATGGTACGGGGTTTTTTGCCCGACTCTCCTCTCTGTGTCTGTCTTTGGCCTCCTTTCTTTTCTAGAACTGTCT</genome_strand>
        <mrna_strand>TCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCGGAGGGGAGATGGTACGGGGTTTTTTGCCCGACTCTCCTCTCTGTGTCTGTCTTTGGCCTCCTTTCTTTTCTAGAACTGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298225" ref_strand="+" ref_description="SGN-E298225 [cLEW-9-K10]">
      <seq>tcctcttcccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgcatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagcttaattcgctggctattctcagcttaattatgaaaatgtgcattaatgttactgttatgcatgcatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67348" stop="68581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67648" g_stop="67979" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68281" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="541" r_length="209" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E298225" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67648" e_stop="67979"/>
          <exon e_start="68073" e_stop="68281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATG</genome_strand>
        <mrna_strand>TCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGCATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGCTTAATTCGCTGGCTATTCTCAGCTTAATTATGAAAATGTGCATTAATGTTACTGTTATGCATGCATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698629" ref_strand="+" ref_description="SGN-E698629 [FA07AD03]">
      <seq>tcctcttcccgcaatatcctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaatagatagtgccgatttatcctttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggttagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgcttcaatctggcgattttaccgcatctctgtagagcttggtgcaattggatatcaccggtgttctatttatgctagatctcggggatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67348" stop="68472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67648" g_stop="67979" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68172" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="433" r_length="100" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E698629" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67648" e_stop="67979"/>
          <exon e_start="68073" e_stop="68172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTTCCCGCAATAT-CTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGT</genome_strand>
        <mrna_strand>TCCTCTTCCCGCAATATCCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAATAGATAGTGCCGATTTATCCTTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGTTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGCTTCAATCTGGCGATTTTACCGCATCTCTGTAGAGCTTGGTGCAATTGGATATCACCGGTGTTCTATTTATGCTAGATCTCGGGGATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313318" ref_strand="+" ref_description="SGN-E313318 [cTOA-13-A14]">
      <seq>tcctcttcccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67348" stop="68408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67648" g_stop="67979" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68108" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="368" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E313318" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67648" e_stop="67979"/>
          <exon e_start="68073" e_stop="68108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATC</genome_strand>
        <mrna_strand>TCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276590" ref_strand="+" ref_description="SGN-E276590 [cLEN-17-B2]">
      <seq>tcctcttcccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtttgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgatgttaccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67348" stop="68405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67648" g_stop="67979" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68105" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="365" r_length="33" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E276590" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67648" e_stop="67979"/>
          <exon e_start="68073" e_stop="68105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGT</genome_strand>
        <mrna_strand>TCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTTTGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATGTTACCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330398" ref_strand="+" ref_description="SGN-E330398 [cTOD-4-O7]">
      <seq>ctcttcccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagaattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactgttatgcatgcatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67350" stop="68580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67650" g_stop="67979" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68280" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="539" r_length="208" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E330398" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330398" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67650" e_stop="67979"/>
          <exon e_start="68073" e_stop="68280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAG-ATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATAT</genome_strand>
        <mrna_strand>CTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGAATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356059" ref_strand="+" ref_description="SGN-E356059 [cLHT-7-C15]">
      <seq>ctcttcccgcaatatctttcatctccagatctgctcatcgtcatttctctgcatctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatagtttcgacttgcatcggtcatcatttccttgcaaatcgtaacaaatagtgccgatctatcatttctgagattttttggtatgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggatttgttacgagattgagagatgtatgaccttttcaaggagttctcggtgatctgagatgattttttgagttttatcggttatcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttcgatttatgctagatctctgggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67350" stop="68469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67650" g_stop="67979" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68169" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="426" r_length="97" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E356059" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67650" e_stop="67979"/>
          <exon e_start="68073" e_stop="68169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGAT</genome_strand>
        <mrna_strand>CTCTTCCCGCAATATCTTTCATCTCCAGATCTGCTCATCGTCATTTCTCTGCATCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATAGTTTCGACTTGCATCGGTCATCATTTCCTTGCAAATCGTAACAAATAGTGCCGATCTATCATTTCTGAGATTTTTTGGTATGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGA-TTTGTTACGAGATTGAGAGATGTATGACCTTTTCAAGGAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTATCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCGATTTATGCTAGATCTCTGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335936" ref_strand="+" ref_description="SGN-E335936 [cTOE-6-M17]">
      <seq>tcttcccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67351" stop="68277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67651" g_stop="67977" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E335936" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67651" e_stop="67977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTAT</genome_strand>
        <mrna_strand>TCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366587" ref_strand="+" ref_description="SGN-E366587 [cLPT-13-B21]">
      <seq>ttcccgcgatatctttcatctccagatctgctcatcgttatttctctgcatctgaatcggtatgcagattcgtgtaaatcgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccttgcaaatcgtaacaaatagtgccgatctatcatttctgagatttttcggtatgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggatttgttacgagattgagagatgtatgaccttttcaaggagttctcggtgatctgagatgattttttgagttttatcggttatcatcgattcaatctggtgattttaccgtacctctgttgagcttggtgcaattggatatcagtggtgttagatttatgctagatctcggggatggtaacgacaagcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67353" stop="68486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67653" g_stop="67979" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68172" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="426" r_length="100" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E366587" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67653" e_stop="67979"/>
          <exon e_start="68073" e_stop="68172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGT</genome_strand>
        <mrna_strand>TTCCCGCGATATCTTTCATCTCCAGATCTGCTCATCGTTATTTCTCTGCATCTGAATCGGTATGCAGATTCGTGTAAATCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCTTGCAAATCGTAACAAATAGTGCCGATCTATCATTTCTGAGATTTTTCGGTATGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGA-TTTGTTACGAGATTGAGAGATGTATGACCTTTTCAAGGAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTATCATCGATTCAATCTGGTGATTTTACCGTACCTCTGTTGAGCTTGGTGCAATTGGATATCAGTGGTGTTAGATTTATGCTAGATCTCGGGGATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721890" ref_strand="+" ref_description="SGN-E721890 [FC15CD08]">
      <seq>cccgcaatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcaaattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcatcttacttatgaaaatttgcatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67355" stop="68557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67655" g_stop="67979" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68257" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="510" r_length="185" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E721890" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67655" e_stop="67979"/>
          <exon e_start="68073" e_stop="68257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTA</genome_strand>
        <mrna_strand>CCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAAATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCATCTTACTTATGAAAATTTGCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331754" ref_strand="+" ref_description="SGN-E331754 [cTOD-7-P24]">
      <seq>gcaatatctttcatctacagatctacttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67358" stop="68469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67658" g_stop="67979" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68169" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="419" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E331754" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67658" e_stop="67979"/>
          <exon e_start="68073" e_stop="68169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGAT</genome_strand>
        <mrna_strand>GCAATATCTTTCATCTACAGATCTACTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365963" ref_strand="+" ref_description="SGN-E365963 [cLPT-11-I20]">
      <seq>gcaatatctttcatctccagatctgctcatcgttatttctctgcatctgaatcggtatgcagattcgtgtaaatcgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccttgcaaatcgtaacaaatagtgccgatctatcatttctgagatttttcggtatgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggatttgttacgagattgagagatgtatgaccttttcaaggagttctcggtgatctgagatgatttttttgagttttatcggttatcatcgtttcaatctggtgattttaccgtacctctgttgagcttggtgcaattggatatcagtggtgttagatttatgctagatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67358" stop="68462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67658" g_stop="67979" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68162" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="412" r_length="90" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E365963" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67658" e_stop="67979"/>
          <exon e_start="68073" e_stop="68162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGA-TTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCT</genome_strand>
        <mrna_strand>GCAATATCTTTCATCTCCAGATCTGCTCATCGTTATTTCTCTGCATCTGAATCGGTATGCAGATTCGTGTAAATCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCTTGCAAATCGTAACAAATAGTGCCGATCTATCATTTCTGAGATTTTTCGGTATGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGA-TTTGTTACGAGATTGAGAGATGTATGACCTTTTCAAGGAGTTCTCGGTGATCTGAGATGATTTTTTTGAGTTTTATCG.............................................................................................GTTATCATCGTTTCAATCTGGTGATTTTACCGTACCTCTGTTGAGCTTGGTGCAATTGGATATCAGTGGTGTTAGATTTATGCTAGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318498" ref_strand="+" ref_description="SGN-E318498 [cTOB-10-E13]">
      <seq>caatatctttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgctggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatgtatgctagatctcggggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67359" stop="68470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67659" g_stop="67979" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68170" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="419" r_length="98" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E318498" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67659" e_stop="67979"/>
          <exon e_start="68073" e_stop="68170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATG</genome_strand>
        <mrna_strand>CAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGCTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATGTATGCTAGATCTCGGGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325474" ref_strand="+" ref_description="SGN-E325474 [cTOC-1-F24]">
      <seq>gatcccccgggctgagaattcgcacgaggcttttcctttccgcatatctttcattcagatctcttatggcattttctgtttgaatcggatgcaattcggagaccgtcgcgatctacagtgagtatggttcacttgtatcggcatcatttccgtgcaaatcgtaacagatagtgccgatnatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67451" stop="68484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67661" g_stop="67979" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="343" r_length="300" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68177" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="448" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E325474" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67661" e_stop="67979"/>
          <exon e_start="68073" e_stop="68177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACG</genome_strand>
        <mrna_strand>ATATCTTTCAT-T-CAGATCT-CTTAT-GGCATTT-TCTG-TT-TGAATCGG-ATGCA-ATTCG-G-AGACCG-TCG-CGATCTACAG--TGAGTATGG-TTC-ACTTGTATCGG-CATCATTTCCGTGCAAATCGTAACAGATAGTGCCGA-TNATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299951" ref_strand="+" ref_description="SGN-E299951 [cLEW-11-K23]">
      <seq>tttcatctccagatcttcttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactgttatgcatgcatatgtacgagtagataatcagactgtagagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67366" stop="68610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67666" g_stop="67979" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68310" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="552" r_length="238" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E299951" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67666" e_stop="67979"/>
          <exon e_start="68073" e_stop="68310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAA</genome_strand>
        <mrna_strand>TTTCATCTCCAGATCTTCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318206" ref_strand="+" ref_description="SGN-E318206 [cTOA-29-D6]">
      <seq>tttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttggaggtgttagaatagggtatcatagtttaattccgtgtctattctcagcttaattatgaaaatttgcattagttttactggtatgcatgcatatgtacgagtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67366" stop="68590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67666" g_stop="67979" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68290" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="532" r_length="218" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E318206" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67666" e_stop="67979"/>
          <exon e_start="68073" e_stop="68290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAG</genome_strand>
        <mrna_strand>TTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGGAGGTGTTAGAATAGGGTATCATAGTTTAATTCCGTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGGTATGCATGCATATGTACGAGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301052" ref_strand="+" ref_description="SGN-E301052 [cLEW-22-B15]">
      <seq>tttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactgttatgcatgcatatgtacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67366" stop="68585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67666" g_stop="67979" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68285" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="527" r_length="213" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E301052" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67666" e_stop="67979"/>
          <exon e_start="68073" e_stop="68285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACG</genome_strand>
        <mrna_strand>TTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365561" ref_strand="+" ref_description="SGN-E365561 [cLPT-12-B12]">
      <seq>tttcatctccagatctgctcatgggtaggtctctgcatctgaatcggtatgcacattcgtgtaaatcgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccttgcaaatcgtaacaaatagtgccgatctatcatttctgagatttttcggtatgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggatttgttacgagattgagagatgtatgaccttttcaaggagttctcggtgatctgagatgattttttgagttatatcggttatgatcgtttcaatctggtgattttaccgtacctatgttgagcttggtgcaattggatatcaatggtgttagatttatgctagatctcggggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67366" stop="68469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67666" g_stop="67979" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68169" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="410" r_length="97" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E365561" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67666" e_stop="67979"/>
          <exon e_start="68073" e_stop="68169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGAT</genome_strand>
        <mrna_strand>TTTCATCTCCAGATCTGCTCATGGGTAGGTCTCTGCATCTGAATCGGTATGCACATTCGTGTAAATCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCTTGCAAATCGTAACAAATAGTGCCGATCTATCATTTCTGAGATTTTTCGGTATGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGA-TTTGTTACGAGATTGAGAGATGTATGACCTTTTCAAGGAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTATATCG.............................................................................................GTTATGATCGTTTCAATCTGGTGATTTTACCGTACCTATGTTGAGCTTGGTGCAATTGGATATCAATGGTGTTAGATTTATGCTAGATCTCGGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317372" ref_strand="+" ref_description="SGN-E317372 [cTOA-28-E22]">
      <seq>ttcatctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccctttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactgttatgcatgcatatgtacgagtagataatcagactgtagagaaaagagaggatgtgtgaggttctttattgttgtttgccggcctttgccatgccgggtgcgctcgcatggcaggtcacaaaacctaataaagatgcgatttttgtgttcggaggggagatggtacggggttttttgcccgactctcctctctgtgtctgtctttggcctcctttcttttctagactgtctgcagatctattcagataacgtctcatcaaatttgggcgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67367" stop="68838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67667" g_stop="67979" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68541" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="779" r_length="466" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E317372" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67667" e_stop="67979"/>
          <exon e_start="68073" e_stop="68541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCGGAGGGGAGATGGTACGGGGTTTTTTGCCCGACTCTCCTCTCTGTGTCTGTCTTTGGCCTCCTTTCTTTTCTAGAACTGTCTGCAAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAA</genome_strand>
        <mrna_strand>TTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCCTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCGGAGGGGAGATGGTACGGGGTTTTTTGCCCGACTCTCCTCTCTGTGTCTGTCTTTGGCCTCCTTTCTTTTCTAG-ACTGTCTGC-AGATCTATTCAGAT-AACGTCTCATCAAATTTGGGCGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365393" ref_strand="+" ref_description="SGN-E365393 [cLPT-2-C15]">
      <seq>tcatctccagatctgctcatcgttatttctctgcatctgaatcggtatgcagattcgtgtaaatcgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccttgcaaatcgtaacaaatagtgccgatctatcatttctgagatttttcggtatgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggatttgttacgagattgagagatgtatgaccttttcaaggagttctcggtgatctgagatgattttttgagttttatcggttatcatcgtttcaatctggtgattttaccgtacctctgttgagcttggtgcaattggatatcagtggtgttagatttatgctagatctcggggatggtaacgacaagcttgaggttgttagataaggttatcatagtttaatttgttgtctattctcagctttattatgaaaatttgcattagttttactgttatgcatgcatatgtacgagaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67368" stop="68592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67668" g_stop="67979" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68292" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="530" r_length="219" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E365393" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67668" e_stop="67979"/>
          <exon e_start="68073" e_stop="68292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGAT</genome_strand>
        <mrna_strand>TCATCTCCAGATCTGCTCATCGTTATTTCTCTGCATCTGAATCGGTATGCAGATTCGTGTAAATCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCTTGCAAATCGTAACAAATAGTGCCGATCTATCATTTCTGAGATTTTTCGGTATGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGA-TTTGTTACGAGATTGAGAGATGTATGACCTTTTCAAGGAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTATCATCGTTTCAATCTGGTGATTTTACCGTACCTCTGTTGAGCTTGGTGCAATTGGATATCAGTGGTGTTAGATTTATGCTAGATCTCGGGGATGGT-AACGACAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTTGTTGTCTATTCTCAGCTTTATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330635" ref_strand="+" ref_description="SGN-E330635 [cTOD-8-F16]">
      <seq>tcatctccagatctccttataggcatttctctgctgctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattaattttactgttatgcatgcatatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67368" stop="68583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67668" g_stop="67979" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68283" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="523" r_length="211" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E330635" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67668" e_stop="67979"/>
          <exon e_start="68073" e_stop="68283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTA</genome_strand>
        <mrna_strand>TCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTGCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAATTTTACTGTTATGCATGCATATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325800" ref_strand="+" ref_description="SGN-E325800 [cTOC-12-E8]">
      <seq>atctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactgttatgcatgcatatgtacgagtagataatcagactgtagagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67370" stop="68610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67670" g_stop="67979" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68310" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="548" r_length="238" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E325800" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67670" e_stop="67979"/>
          <exon e_start="68073" e_stop="68310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAA</genome_strand>
        <mrna_strand>ATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284049" ref_strand="+" ref_description="SGN-E284049 [cLER-13-O1]">
      <seq>tctccagatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactgttatgcatgcatatgtacgagtagataatcagactgtagagaaaagagaggatgtgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67371" stop="68624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67671" g_stop="67979" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68324" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="561" r_length="252" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E284049" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67671" e_stop="67979"/>
          <exon e_start="68073" e_stop="68324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTG</genome_strand>
        <mrna_strand>TCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299500" ref_strand="+" ref_description="SGN-E299500 [cLEW-20-A1]">
      <seq>tccatatctccttataggcatttctctgcttctgaatgggnatgtcggatacatgtagaggcgccnccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67373" stop="68556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67673" g_stop="67979" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68256" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="492" r_length="184" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E299500" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67673" e_stop="67979"/>
          <exon e_start="68073" e_stop="68256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATG-CAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATT</genome_strand>
        <mrna_strand>TCCATATCTCCTTATAGGCATTTCTCTGCTTCTGAATGGGNATGTCGGATACATGTAGAGGCGCCNCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740286" ref_strand="+" ref_description="SGN-E740286 [LC20DC09]">
      <seq>catatctccttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactgttatgcatgcatatgtacgagtagataatcagactgtagagaaaagagaggatgtgtgaggttctttattgttgtttgccggcctttgccatgccgggtgcgctcgcatggcaggtcacaaaacctaataaagatgcgatttttgtgttcggaggggagatggtacggggttttttgcccgactctcctctctgtgtctgtctttggcctcctttcttttctagaactgtctgcaagatctattcagataaacgtctcatcaaatttggcgttaatgtccccgaacgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67375" stop="68857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67675" g_stop="67979" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68557" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="790" r_length="485" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E740286" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67675" e_stop="67979"/>
          <exon e_start="68073" e_stop="68557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCGGAGGGGAGATGGTACGGGGTTTTTTGCCCGACTCTCCTCTCTGTGTCTGTCTTTGGCCTCCTTTCTTTTCTAGAACTGTCTGCAAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGG</genome_strand>
        <mrna_strand>CATATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCGGAGGGGAGATGGTACGGGGTTTTTTGCCCGACTCTCCTCTCTGTGTCTGTCTTTGGCCTCCTTTCTTTTCTAGAACTGTCTGCAAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365979" ref_strand="+" ref_description="SGN-E365979 [cLPT-11-D7]">
      <seq>tctgctcatcgttatttctctgcatctgaatcggtatgcagattcgtgtaaatcgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccttgcaaatcgtaacaaatagtgccgatctatcatttctgagatttttcggtatgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggatttgttacgagattgagagatgtatgaccttttcaaggagttctcggtgatctgagatgattttttgagttttatcggttatcatcgtttcaatctggtgattttaccgtacctctgttgagcttggtgcaattggatatcagtggtgttagatttatgctagatctcggggatggtaacgacaagcttgaggttgttagataaggttatcatagtttaatttgttgtctattctcagctctattatgaaaatttgcattagttntactgttatgcatgcatatgtacgagaaaataatcagattgtagagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67379" stop="68610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67679" g_stop="67979" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68310" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="537" r_length="237" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E365979" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67679" e_stop="67979"/>
          <exon e_start="68073" e_stop="68310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAA</genome_strand>
        <mrna_strand>TCTGCTCATCGTTATTTCTCTGCATCTGAATCGGTATGCAGATTCGTGTAAATCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCTTGCAAATCGTAACAAATAGTGCCGATCTATCATTTCTGAGATTTTTCGGTATGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGA-TTTGTTACGAGATTGAGAGATGTATGACCTTTTCAAGGAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTATCATCGTTTCAATCTGGTGATTTTACCGTACCTCTGTTGAGCTTGGTGCAATTGGATATCAGTGGTGTTAGATTTATGCTAGATCTCGGGGATGGT-AACGACAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTTGTTGTCTATTCTCAGCTCTATTATGAAAATTTGCATTAGTTNTACTGTTATGCATGCATATGTACGAGAAAATAATCAGATTGTAGAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319654" ref_strand="+" ref_description="SGN-E319654 [cTOB-12-O16]">
      <seq>ttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactgttatgcatgcatatgtacgagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67384" stop="68589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67684" g_stop="67979" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68289" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="513" r_length="217" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E319654" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67684" e_stop="67979"/>
          <exon e_start="68073" e_stop="68289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTA</genome_strand>
        <mrna_strand>TTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317697" ref_strand="+" ref_description="SGN-E317697 [cTOB-8-I14]">
      <seq>ttataggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggatgttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccggatctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67384" stop="68411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67684" g_stop="67979" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68111" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="335" r_length="39" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E317697" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67684" e_stop="67979"/>
          <exon e_start="68073" e_stop="68111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCT</genome_strand>
        <mrna_strand>TTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATGTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGGATCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317583" ref_strand="+" ref_description="SGN-E317583 [cTOB-8-E17]">
      <seq>taggcatttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactgttatgcatgcatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67387" stop="68581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67687" g_stop="67979" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68281" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="502" r_length="209" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E317583" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67687" e_stop="67979"/>
          <exon e_start="68073" e_stop="68281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATG</genome_strand>
        <mrna_strand>TAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319069" ref_strand="+" ref_description="SGN-E319069 [cTOB-14-P3]">
      <seq>ggcatttctctgcttctgaatcgctatgcagattcgtgtagaccgttcgccgatctacagtttgagtattgcttcaaatgagggtcggtcatcatttgcgcgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctcgacaaagattggatagatctgatggattttgttaccagattgagagatgcatgaccttttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67389" stop="68237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67689" g_stop="67937" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E319069" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>249</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67689" e_stop="67937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACT-TGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCA</genome_strand>
        <mrna_strand>GGCATTTCTCTGCTTCTGAATCGCTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATTGCTTCAAATGAGGGTCGGTCATCATTTGCGCGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTCGACAAAGATTGGATAGATCTGATGGATTTTGTTACCAGATTGAGAGATGCATGACCTTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365347" ref_strand="+" ref_description="SGN-E365347 [cLPT-2-N13]">
      <seq>ttatttctttgcatctgaatcggtatgcagattcgtgtaaatcgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccttgcaaatcgtaacaaatagtgccgatctatcatttctgagatttttcggtatgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggatttgttacgagattgagagatgtatgaccttttcaaggagttctcggtgatctgagatgattttttgagtttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67392" stop="68276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67690" g_stop="67976" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E365347" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>287</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67690" e_stop="67976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTA</genome_strand>
        <mrna_strand>TTATTTCTTTGCATCTGAATCGGTATGCAGATTCGTGTAAATCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCTTGCAAATCGTAACAAATAGTGCCGATCTATCATTTCTGAGATTTTTCGGTATGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGA-TTTGTTACGAGATTGAGAGATGTATGACCTTTTCAAGGAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332841" ref_strand="+" ref_description="SGN-E332841 [cTOD-18-L10]">
      <seq>atttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttaccgttatgcatgcatatgtacgagtagataatcagactgtagagaaaagagaggatgtgtgaggttctttattgttgtttgccggcctttgccatgccgggtgcgctcgcatggcaggtcacaaaacctaataaagatgcgatttttgtgttcggaggggagatggtacggggttttttgcccgactctcctctctgtgtctgtctttggcctcctttcttttctagactgtctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67392" stop="68801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67692" g_stop="67979" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68501" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="716" r_length="428" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E332841" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67692" e_stop="67979"/>
          <exon e_start="68073" e_stop="68501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCGGAGGGGAGATGGTACGGGGTTTTTTGCCCGACTCTCCTCTCTGTGTCTGTCTTTGGCCTCCTTTCTTTTCTAGAACTGTCTGCA</genome_strand>
        <mrna_strand>ATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACCGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCGGAGGGGAGATGGTACGGGGTTTTTTGCCCGACTCTCCTCTCTGTGTCTGTCTTTGGCCTCCTTTCTTTTCTAG-ACTGTCTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324322" ref_strand="+" ref_description="SGN-E324322 [cTOC-6-C1]">
      <seq>atttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactgttatgcatgcatatgtacgagtagataatcagactgtagagaaaagagaggatgtgtgaggttctttattgttgtttgccggcctttgccatgccgggtgcgctcgcatggcaggtcacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67392" stop="68689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67692" g_stop="67979" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68389" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="605" r_length="317" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E324322" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67692" e_stop="67979"/>
          <exon e_start="68073" e_stop="68389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAA</genome_strand>
        <mrna_strand>ATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302241" ref_strand="+" ref_description="SGN-E302241 [cLEW-19-M6]">
      <seq>atttctctgcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactgttatgcatgcatatgtacgagtagataatcagactgtagagaaaagagaggatgtgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67392" stop="68624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67692" g_stop="67979" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68324" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="540" r_length="252" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E302241" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67692" e_stop="67979"/>
          <exon e_start="68073" e_stop="68324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTG</genome_strand>
        <mrna_strand>ATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327905" ref_strand="+" ref_description="SGN-E327905 [cTOC-22-G18]">
      <seq>gcttctgaatcggtatgcagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactgttatgcatgcatatgtacgagtagataatcagactgtagagaaaagagaggatgtgtgaggttctttattgttgtttgccggcctttgccatgccgggtgcgctcgcatggcaggtcacaaaacctaataaagatgcgatttttgtgttcggaagggagatggtacggggttttttgcccgactctcctctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67400" stop="68759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67700" g_stop="67979" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68459" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="667" r_length="387" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E327905" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67700" e_stop="67979"/>
          <exon e_start="68073" e_stop="68459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCGGAGGGGAGATGGTACGGGGTTTTTTGCCCGACTCTCCTCTCT</genome_strand>
        <mrna_strand>GCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCGGAAGGGAGATGGTACGGGGTTTTTTGCCCGACTCTCCTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319262" ref_strand="+" ref_description="SGN-E319262 [cTOB-16-A16]">
      <seq>cagattcgtgtagaccgttcgccgatctacagtttgagtatggtttcaacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattctaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacgtctcatcaaatttggcgttaatgtccccgaacgatggtttcgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67417" stop="68865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67717" g_stop="67979" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68170" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="361" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68171" i_stop="68513" i_length="343">
            <donor d_prob="0.539" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68514" g_stop="68565" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="413" r_length="52" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E319262" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67717" e_stop="67979"/>
          <exon e_start="68073" e_stop="68170"/>
          <exon e_start="68514" e_stop="68565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCGGAGGGGAGATGGTACGGGGTTTTTTGCCCGACTCTCCTCTCTGTGTCTGTCTTTGGCCTCCTTTCTTTTCTAGAACTGTCTGCAAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATA</genome_strand>
        <mrna_strand>CAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCAACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTCTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATG.......................................................................................................................................................................................................................................................................................................................................................GTAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318102" ref_strand="+" ref_description="SGN-E318102 [cTOA-29-F21]">
      <seq>attcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactgttatgcatgcatatgtacgagtagataatcagactgtatagaaaagagaggatgtgtgaggctctttattgttgtttgccggcctttgccatgccgggtgcgctcgcatggcaggtcacaatacctaataaagatgcgatttttgtgttcggatgggagatggtacggtgttttttgcccgactctcgtctctgtgactgtctttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67420" stop="68774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67720" g_stop="67979" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68474" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="662" r_length="402" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E318102" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67720" e_stop="67979"/>
          <exon e_start="68073" e_stop="68474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCGGAGGGGAGATGGTACGGGGTTTTTTGCCCGACTCTCCTCTCTGTGTCTGTCTTTGGC</genome_strand>
        <mrna_strand>ATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTATAGAAAAGAGAGGATGTGTGAGGCTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAATACCTAATAAAGATGCGATTTTTGTGTTCGGATGGGAGATGGTACGGTGTTTTTTGCCCGACTCTCGTCTCTGTGACTGTCTTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318385" ref_strand="+" ref_description="SGN-E318385 [cTOA-29-F20]">
      <seq>attcgtgtagaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactgttatgcatgcatatgtacgagtagataatcagactgtagagaaaagagaggatgtgtgaggttctttattgttgtttgccggcctttgccatgccgggtgcgctcgcatggcaggtcacaaaacctaataaagatgcgatttttgtgttcggaggggagatggtacggggttttttgcccgactctcctctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67420" stop="68759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67720" g_stop="67979" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68459" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="647" r_length="387" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E318385" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67720" e_stop="67979"/>
          <exon e_start="68073" e_stop="68459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCGGAGGGGAGATGGTACGGGGTTTTTTGCCCGACTCTCCTCTCT</genome_strand>
        <mrna_strand>ATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCGGAGGGGAGATGGTACGGGGTTTTTTGCCCGACTCTCCTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366562" ref_strand="+" ref_description="SGN-E366562 [cLPT-13-A22]">
      <seq>taaatcgttcgccatctacagtttgagtatggtttcgacttgtatcggtcatcatttccttgcaaatcgtaacaaatagtgccgatctatcatttctgagatttttcggtatgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggatttgttacgagattgagagatgtatgaccttttcaaggagttctcggtgatctgagatgattttttgagttttatcggttatcatcgtttcaatctggtgattttaccgtacctctgttgagcttggtgcaattggatatcagtggtgttagatttatgctagatctcggggatggtaacgacaagcttgaggttgttagataaggttatcatagtttaatttgttgtctattctcagctctattatgaaaatttgcattagttttactgttatgcatgcatatgtacgagaaaataatcagatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67427" stop="68601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67727" g_stop="67979" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68301" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="479" r_length="228" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E366562" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67727" e_stop="67979"/>
          <exon e_start="68073" e_stop="68301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACT</genome_strand>
        <mrna_strand>TAAATCGTTCGCC-ATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCTTGCAAATCGTAACAAATAGTGCCGATCTATCATTTCTGAGATTTTTCGGTATGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGA-TTTGTTACGAGATTGAGAGATGTATGACCTTTTCAAGGAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTATCATCGTTTCAATCTGGTGATTTTACCGTACCTCTGTTGAGCTTGGTGCAATTGGATATCAGTGGTGTTAGATTTATGCTAGATCTCGGGGATGGT-AACGACAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTTGTTGTCTATTCTCAGCTCTATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGAAAATAATCAGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330711" ref_strand="+" ref_description="SGN-E330711 [cTOD-8-G18]">
      <seq>gaccgttcgccgatctacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactgttatgcatgcatatgtacgagtagataatcagactgtagagaaaagagaggatgtgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67429" stop="68624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67729" g_stop="67979" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68324" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="503" r_length="252" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E330711" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67729" e_stop="67979"/>
          <exon e_start="68073" e_stop="68324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTG</genome_strand>
        <mrna_strand>GACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325501" ref_strand="+" ref_description="SGN-E325501 [cTOC-1-N24]">
      <seq>ttcgccgatttacagtttgagtatggtttcgacttgtatcggtcatcatttccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactgttatgcatgcatatgtacgagtagataatcagactgtagagaaaagagaggatgtgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67434" stop="68624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67734" g_stop="67979" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68324" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="498" r_length="252" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E325501" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67734" e_stop="67979"/>
          <exon e_start="68073" e_stop="68324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTG</genome_strand>
        <mrna_strand>TTCGCCGATTTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262932" ref_strand="+" ref_description="SGN-E262932 [cLEG-59-H8]">
      <seq>tccgtgcaaatcgtaacagatagtgccgatttatcatttctgaggtatttcggtacgaatattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcactagttttactgttatgcatgcatatgtacgagtagataatcagactgtagagaaaagagaggatgtgtgaggttctttattgttgtttgccggcctttgccatgccgggtgcgctcgcatggcaggtcacaaaacctaataaagatgcgatttttgtgttcggaggggagatggtacggggttttttgcccgactctcctctctgtgtctgtctttggcctcctttcttttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67484" stop="68788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67784" g_stop="67979" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68488" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="612" r_length="416" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E262932" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67784" e_stop="67979"/>
          <exon e_start="68073" e_stop="68488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCGGAGGGGAGATGGTACGGGGTTTTTTGCCCGACTCTCCTCTCTGTGTCTGTCTTTGGCCTCCTTTCTTTTCT</genome_strand>
        <mrna_strand>TCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCACTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCGGAGGGGAGATGGTACGGGGTTTTTTGCCCGACTCTCCTCTCTGTGTCTGTCTTTGGCCTCCTTTCTTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319987" ref_strand="+" ref_description="SGN-E319987 [cTOB-31-E3]">
      <seq>atattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactgttatgcatgcatatgtacgagtagataatcagactgtagagaaaagagaggatgtgtgaggttctttattgttgtttgccggcctttgccatgccgggtgcgctcgcatggcaggtcacaaaacctaataaagatgcgatttttgtgttcggaggggagatggtacggggttttttgcccgactctcctctctgtgtctgtctttggcctcctttcttttctagaactgtctgcaagatctattcagataaacgtctcatcaaatttggcgttaatgtcccccgaacgatggtttcgatatccgcaaagttatagcagcgctctaccttttncatggatangtatgtcatgcactattaatacnnacatggacaggcgaattctaggaatattcagctccactctcctatcaaaggtacacttgtgaattcccctttactactttgacacttaactttttttcatgagtaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67542" stop="69039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67842" g_stop="67979" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68739" g_length="667"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="806" r_length="668" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E319987" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67842" e_stop="67979"/>
          <exon e_start="68073" e_stop="68739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCGGAGGGGAGATGGTACGGGGTTTTTTGCCCGACTCTCCTCTCTGTGTCTGTCTTTGGCCTCCTTTCTTTTCTAGAACTGTCTGCAAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGT-CCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATT-CCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATT</genome_strand>
        <mrna_strand>ATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCGGAGGGGAGATGGTACGGGGTTTTTTGCCCGACTCTCCTCTCTGTGTCTGTCTTTGGCCTCCTTTCTTTTCTAGAACTGTCTGCAAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTNCATGGATANGTATGTCATGCACTATTAATACNNACATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCCCTTTACT-ACTTTGACACTTAACTTTTTTTCATGAGTAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375752" ref_strand="+" ref_description="SGN-E375752 [TUS-35-M23]">
      <seq>tattgctcgggttatggacgatgctgttggctagacgaagattggatagatctgatggattttgttacgagattgagagatgcatgaccttttcaagaagttctcggtgatctgagatgattttttgagttttatcggttgtcatcgtttcaatctggtgattttaccgtatctctgtagagcttggtgcaattggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactgttatgcatgcatatgtacgagtagataatcagactgtagagaaaagagaggatgtgtgaggttctttattgttgtttgccggcctttgccatgccgggtgcgctcgcatggcaggtcacaaaacctaataaagatgcgatttttgtgttcggaggggagatggtacggggttttttgcccgactctcctctctgtgtctgtctttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67543" stop="68774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67843" g_stop="67979" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68073" g_stop="68474" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="539" r_length="402" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E375752" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67843" e_stop="67979"/>
          <exon e_start="68073" e_stop="68474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCGGTGAGATTCTATGCTTATTCTATCTGTATTTTACCACAACTTTTGATCTAATTCTGTTTATTGATATCTATTGTGTGTTTCGGATCGCTGCAGGTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCGGAGGGGAGATGGTACGGGGTTTTTTGCCCGACTCTCCTCTCTGTGTCTGTCTTTGGC</genome_strand>
        <mrna_strand>TATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG.............................................................................................GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCGGAGGGGAGATGGTACGGGGTTTTTTGCCCGACTCTCCTCTCTGTGTCTGTCTTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E471601" ref_strand="+" ref_description="SGN-E471601 [cSTB-24-H13]">
      <seq>attttaccgtatctctgtagagctcggtgcaattggatatcactggtgttctatttatgctagatctcgagggatggtaatcggcaagcttgaggttgttagataaggttatcatagttaaatttgttgtctattctcagcttaattatgaacatttgcattagtttttctcatatgcatgcatatgtatgaggaaataatgagattgtagagaaaagagaggatatgtgaggttctttattgttgtttaccggcctttgccatgccgggtgcgctcgcatggcaggtcacaaaacctaataaagatgcgatttttgtgtttggaggggagatggtacggggttttttgcccgactctcctctctgtgtctcgtctttggcctcccttctttgttttctagaattgtctgcaagatctactcagataaacgtctcatcaaatttggcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67796" stop="68839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68096" g_stop="68539" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E471601" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E471601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68096" e_stop="68539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCG-GGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCGGAGGGGAGATGGTACGGGGTTTTTTGCCCGACTCTCCTCTCTGTGTCT-GTCTTTGGCCT--C--CTTTCTTTTCTAGAACTGTCTGCAAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTT</genome_strand>
        <mrna_strand>ATTTTACCGTATCTCTGTAGAGCTCGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGAGGGATGGTAATCGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTAAATTTGTTGTCTATTCTCAGCTTAATTATGAACATTTGCATTAGTTTTTCTCATATGCATGCATATGTATGAGGAAATAATGAGATTGTAGAGAAAAGAGAGGATATGTGAGGTTCTTTATTGTTGTTTACCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTTGGAGGGGAGATGGTACGGGGTTTTTTGCCCGACTCTCCTCTCTGTGTCTCGTCTTTGGCCTCCCTTCTTTGTTTTCTAGAATTGTCTGCAAGATCTACTCAGATAAACGTCTCATCAAATTTGGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202124" ref_strand="+" ref_description="SGN-E202124 [cLEC-7-O7]">
      <seq>ttggatatcactggtgttctatttatgctagatctcggggatggtaaacggcaagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactgttatgcatgcatatgtaccagtagataatcagactgtagagaaaagagaggatgtgtgagggtctttattgttgtttgccggcctttgccatgccgggtgcgctcgcatggcacgtcacaaaacctaataaagatgccatttttgtgttcggaggggagatggtacggtgtcttttgcccgactctcctctctgtgtctgtctttggcctcctttcttttatataactgtctgcaagatctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67828" stop="68810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68128" g_stop="68510" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E202124" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68128" e_stop="68510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCGGAGGGGAGATGGTACGGGGTTTTTTGCCCGACTCTCCTCTCTGTGTCTGTCTTTGGCCTCCTTTCTTTTCTAGAACTGTCTGCAAGATCTATT</genome_strand>
        <mrna_strand>TTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACCAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGGTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCACGTCACAAAACCTAATAAAGATGCCATTTTTGTGTTCGGAGGGGAGATGGTACGGTGTCTTTTGCCCGACTCTCCTCTCTGTGTCTGTCTTTGGCCTCCTTTCTTTTATATAACTGTCTGCAAGATCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334400" ref_strand="+" ref_description="SGN-E334400 [cTOD-21-J14]">
      <seq>caagcttgaggttgttagataaggttatcatagtttaattcgttgtctattctcagcttaattatgaaaatttgcattagttttactgttatgcatgcatatgtacgagtagataatcagactgtagagaaaagagaggatgtgtgaggttctttattgttgtttgccggcctttgccatgccgggtgcgctcgcatggcaggtcacaaaacctaataaagatgcgatttttgtgttcggaggggagatggtacggggttttttgcccgactctcctctctgtgtctgtctttggcctcctttcttttctagaactgtctgcaagatctattcagataaacgtctcatcaaatttggcgttaatgtccccgaacgatggtttcgatatccgcaaagttatagcagcgctctaccttttcaatggataggtatgtcatgcactattaatacaacaatggacaggcgaattctaggaatattcagctccactctcctatcaaaggtacacttgtgaattcctttaactaactttgacacttaacttttttccatgagtaaattgccaatagtagtccgtaaaatctttaattgtttctgagtacaggtagtaattttgttaacatataagagttcattcagcctacttantactattgattaatttatcaaatgaaatagcaaaatgacttattttgagtactggaacagttcaattctaagtcaaatctgtttcacagagatataagataatctaaccatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67879" stop="69240"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68179" g_stop="68940" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="762" r_length="762" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E334400" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68179" e_stop="68940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCGGAGGGGAGATGGTACGGGGTTTTTTGCCCGACTCTCCTCTCTGTGTCTGTCTTTGGCCTCCTTTCTTTTCTAGAACTGTCTGCAAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTG</genome_strand>
        <mrna_strand>CAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCGGAGGGGAGATGGTACGGGGTTTTTTGCCCGACTCTCCTCTCTGTGTCTGTCTTTGGCCTCCTTTCTTTTCTAGAACTGTCTGCAAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTANTACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E252961" ref_strand="+" ref_description="SGN-E252961 [cLEG-25-M2]">
      <seq>ttttactgttatgcatgcatatgtacgagtagataatcagactgtagagaaaagagaggatgtgtgaggttctttattgttgtttgccggcctttgccatgccgggtgcgctcgcatggcaggtcacaaaacctaataaagatgcgatttttgtgttcggaggggagatggtacggggttttttgcccgactctcctctctgtgtctgtctttggcctcctttcttttctagaactgtctgcaagatctattcagataaacgtctcatcaaatttggcgttaatgtccccgaacgatggtttcgatatccgcaaagttatagcagcgctctaccttttcaatggataggtatgtcatgcactattaatacaacaatggacaggcgaattctaggaatattcagctccactctcctatcaaaggtacacttgtgaattcctttaactaactttgacacttaacttttttccatgagtaaattgccaatagtagtccgtaaaatctttaattgtttctgagtacaggtagtaattttgttaacatataagagttcattcagcctacttataactattgattaatttatcaaatgaaatagcaaaatgacttattttgagtactgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="67959" stop="69182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68259" g_stop="68882" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="624" r_length="624" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E252961" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68259" e_stop="68882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCGGAGGGGAGATGGTACGGGGTTTTTTGCCCGACTCTCCTCTCTGTGTCTGTCTTTGGCCTCCTTTCTTTTCTAGAACTGTCTGCAAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGA</genome_strand>
        <mrna_strand>TTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCGGAGGGGAGATGGTACGGGGTTTTTTGCCCGACTCTCCTCTCTGTGTCTGTCTTTGGCCTCCTTTCTTTTCTAGAACTGTCTGCAAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263412" ref_strand="+" ref_description="SGN-E263412 [cLEG-62-L12]">
      <seq>aaaagagaggatgtgtgaggttctttattgttgtttgccggcctttgccatgccgggtgcgctcgcatggcaggtcacaaaacctaataaagatgcgatttttgtgttcggaggggagatggtacggggttttttgcccgactctcctctctgtgtctgtctttggcctcctttcttttctagaactgtctgcaagatctattcagataaacgtctcatcaaatttggcgttaatgtccccgaacgatggtttcgatatccgcaaagttatagcagcgctctaccttttcaatggataggtatgtcatgcactattaatacaacaatggacaggcgaattctaggaatattcagctccactctcctatcaaaggtacacttgtgaattcctttaactaactttgacacttaacttttttccatgagtaaattgccaatagtagtccgtaaaatctttaattgtttctgagtacaggtagtaattttgttaacatataagagttcattcagcctacttataactattgattaatttatcaaatgaaatagcaaaatgacttattttgagtactggaacagttcaattctaagtcaaatctgtttcacagagatataagataatctaaccatttgcgaataatgataaattaacatctgtagcttaatatatctggagtgaactagttttccaaatgnaggtttagcagttttgacgatctgcaaatttggggtgtgagatactgatctctcttttactaatcaaatggtgggctattaaatgagactagattattattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="68008" stop="69403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68308" g_stop="69103" g_length="796"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="798" r_length="798" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E263412" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68308" e_stop="69103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCGGAGGGGAGATGGTACGGGGTTTTTTGCCCGACTCTCCTCTCTGTGTCTGTCTTTGGCCTCCTTTCTTTTCTAGAACTGTCTGCAAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAATG-AGGTTTAGCAGTTTTGACGATCTGAAAATTT-GGGTTTGAGATACTGATCTCTCTTTTACTAATCAAATGGTGGGCTATTAAATGAGACTAGATTATTATTT</genome_strand>
        <mrna_strand>AAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCGGAGGGGAGATGGTACGGGGTTTTTTGCCCGACTCTCCTCTCTGTGTCTGTCTTTGGCCTCCTTTCTTTTCTAGAACTGTCTGCAAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAATGNAGGTTTAGCAGTTTTGACGATCTGCAAATTTGGGGTGTGAGATACTGATCTCTCTTTTACTAATCAAATGGTGGGCTATTAAATGAGACTAGATTATTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709777" ref_strand="+" ref_description="SGN-E709777 [FA53AD09]">
      <seq>cccttttgttctttattgttgtttgccggcctttgccatgccgcgtgcgctcgcatggcaggtcacaaaacctaataaagatgcgatttttgtgttcggaggggagatggtacggggttttttgcccgactctcctctctgtgtctgtctttggcctcctttcttttctagaactgtctgcaagatctattcagataaacgtctcatcaaatttggcgttaatgtccccgaacgatggtttcgatatccgcaaagttatagcagcgctctaccttttcaatggataggtatgtcatgcactattaatacaacaatggacaggcgaattctaggaatattcagctccactctcctatcaaaggtacacttgtgaattcctttaactaactttgacacttaacttttttccatgagtaaattgccaatagtagtccgtaaaatctttaattgtttctgagtacaggtagtaattttgttaacatataacagttcattcaccctacttataactattgattactttatcaaatgaaatagcaaaatgacttattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="68027" stop="69173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68320" g_stop="68873" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E709777" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68320" e_stop="68873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCGGAGGGGAGATGGTACGGGGTTTTTTGCCCGACTCTCCTCTCTGTGTCTGTCTTTGGCCTCCTTTCTTTTCTAGAACTGTCTGCAAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTG</genome_strand>
        <mrna_strand>CCCTTTTGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGCGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCGGAGGGGAGATGGTACGGGGTTTTTTGCCCGACTCTCCTCTCTGTGTCTGTCTTTGGCCTCCTTTCTTTTCTAGAACTGTCTGCAAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAACAGTTCATTCACCCTACTTATAACTATTGATTACTTTATCAAATGAAATAGCAAAATGACTTATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E275029" ref_strand="+" ref_description="SGN-E275029 [cLEN-16-H12]">
      <seq>ttgttgattgccggcctttgccatgccgggtgcgctcgcatggcaggtcacaaaacctaataaagatgcgatttttgtgttcggaggggagatggtacggggttttttgcccgactctcctatctgtgtctgactatggcctactttcttttgtagaactgactgcaagatctattcagataaacgtctcatcaaatttggcgttaatgtccccgaacgatgggttagatatccgcaaagttatagcagcgctgtaccttttcaatggataggtatgtcatgcactattaatacagcaatggacaggcgaatactaagaatattgagctccactctgctattaaaggtacacttgtgaattcctttaactaactttgacacttaacttttttgcatgagtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="68035" stop="69037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68335" g_stop="68737" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="403" r_length="403" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E275029" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68335" e_stop="68737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCGGAGGGGAGATGGTACGGGGTTTTTTGCCCGACTCTCCTCTCTGTGTCTGTCTTTGGCCTCCTTTCTTTTCTAGAACTGTCTGCAAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAA</genome_strand>
        <mrna_strand>TTGTTGATTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCGGAGGGGAGATGGTACGGGGTTTTTTGCCCGACTCTCCTATCTGTGTCTGACTATGGCCTACTTTCTTTTGTAGAACTGACTGCAAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGGTTAGATATCCGCAAAGTTATAGCAGCGCTGTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAGCAATGGACAGGCGAATACTAAGAATATTGAGCTCCACTCTGCTATTAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTGCATGAGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273859" ref_strand="+" ref_description="SGN-E273859 [cLEN-7-C4]">
      <seq>cggcctttgccatgccgggtgcgctcgcatggcaggtcacaaaacctaataaagatgcgatttttgtgttcggaggggagatggtacggggttttttgcccgactctcctctctgtgtctgtctttggcctcctttcttttctagaactgtctgcaagatctattcagataaacgtctcatcaaatttggcgttaatgtccccgaacgatggtttcgatatccgcaaagttatagcagcgctctaccttttcaatggataggtatgtcatgcactattaatacaacaatggacaggcgaattctaggaatattcagctccactctcctatcaaaggtacacttgtgaattcctttaactaactttgacacttaacttttttccatgagtaaattgccaatagtagtccgtaaaatctttaattgtttctgagtacaggtagtaattttgttaacatataagagttcattcagcctacttataactattgattaatttatcaaatgaaatagcaaaatgacttattttgagtactggaacagttcaattctaagtcaaatctgtttcacagagatataagataatctaaccatttgcgaataatgataaattaacatctgtagcttaatatatctggagtgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="68046" stop="69288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68346" g_stop="68988" g_length="643"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="643" r_length="643" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E273859" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68346" e_stop="68988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCGGAGGGGAGATGGTACGGGGTTTTTTGCCCGACTCTCCTCTCTGTGTCTGTCTTTGGCCTCCTTTCTTTTCTAGAACTGTCTGCAAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAAC</genome_strand>
        <mrna_strand>CGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCGGAGGGGAGATGGTACGGGGTTTTTTGCCCGACTCTCCTCTCTGTGTCTGTCTTTGGCCTCCTTTCTTTTCTAGAACTGTCTGCAAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313947" ref_strand="+" ref_description="SGN-E313947 [cTOA-19-M5]">
      <seq>cctttgccatgccgggtgcgctcgcatggcaggtcacaaaacctaataaagatgcgatttttgtgttcggaggggagatggtacggggttttttgcccgactctcctctctgtgtctgtctttggcctcctttcttttctagaactgtctgcaagatctattcagataaacgtctcatcaaatttggcgttaatgtccccgaacgatggtttcgatatccgcaaagttatagcagcgctctaccttttcaatggataggtatgtcatgcactattaatacaacaatggacaggcgaattctaggaatattcagctccactctcctatcaaaggtacacttgtgaattcctttaactaactttgacacttaacttttttccatgagtaaattgccaatagtagtccgtaaaatctttaattgtttctgagtacaggtagtaattttgttaacatataagagttcattcagcctacttataactattgattaatttatcaaatgaaatagcaaaatgacttattttgagtactggaacagttcaattctaagtcaaatctgtttcacagagatataagataatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="68049" stop="69232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68349" g_stop="68932" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="584" r_length="584" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E313947" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68349" e_stop="68932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCGGAGGGGAGATGGTACGGGGTTTTTTGCCCGACTCTCCTCTCTGTGTCTGTCTTTGGCCTCCTTTCTTTTCTAGAACTGTCTGCAAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTA</genome_strand>
        <mrna_strand>CCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCGGAGGGGAGATGGTACGGGGTTTTTTGCCCGACTCTCCTCTCTGTGTCTGTCTTTGGCCTCCTTTCTTTTCTAGAACTGTCTGCAAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314114" ref_strand="+" ref_description="SGN-E314114 [cTOA-19-J16]">
      <seq>cctttgccatgccgggtgcgctcgcatggcaggtcacaaaacctaataaagatgcgatttttgtgttcggaggggagatggtacggggttttttgcccgactctcctctctgtgtctgtctttggcctcctttcttttctagaactgtctgcaagatctattcagataaacgtctcatcaaatttggcgttaatgtccccgaacgatggtttcgatatccgcaaagttatagcagcgctctaccttttcaatggataggtatgtcatgcactattaatacaacaatggacaggcgaattctaggaatattcagctccactctcctatcaaaggtacacttgtgaattcctttaactaactttgacacttaacttttttccatgagtaaattgccaatagtagtccgtaaaatctttaattgtttctgagtacaggtagtaattttgttaacatataagagttcattcagcctacttataactattgattaatttatcaaatgaaatagcaaaatgacttattttgagtactggaacagttcaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="68049" stop="69194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68349" g_stop="68894" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E314114" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68349" e_stop="68894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCGGAGGGGAGATGGTACGGGGTTTTTTGCCCGACTCTCCTCTCTGTGTCTGTCTTTGGCCTCCTTTCTTTTCTAGAACTGTCTGCAAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTC</genome_strand>
        <mrna_strand>CCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCGGAGGGGAGATGGTACGGGGTTTTTTGCCCGACTCTCCTCTCTGTGTCTGTCTTTGGCCTCCTTTCTTTTCTAGAACTGTCTGCAAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211689" ref_strand="+" ref_description="SGN-E211689 [cLEC-67-N6]">
      <seq>ttcggaggggagatggtacggggttttttgcccgactctcctctctgtgtctgtctttggcctcctttcttttctagaactgtctgcaagatctattcagataaacgtctcatcaaatttggcgttaatgtccccgaacgatggtttcgatatccgcaaagttatagcagcgctctaccttttcaatggataggtatgtcatgcactattaatacaacaatggacaggcgaattctaggaatattcagctccactctcctatcaaaggtacacttgtgaattcctttaactaactttgacacttaacttttttccatgagtaaattgccaatagtagtccgtaaaatctttaattgtttctgagtacaggtagtaattttgttaacatataagagttcattcagcctacttataactattgattaatttatcaaatgaaatagcaaaatgacttattttgagtactggaacagttcaattctaagtcaaatctgtttcacagagatataagataatctaaccatttgcgaataatgataaattaacatctgtagcttaatatatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="68114" stop="69279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68414" g_stop="68979" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="566" r_length="566" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E211689" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68414" e_stop="68979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGGAGGGGAGATGGTACGGGGTTTTTTGCCCGACTCTCCTCTCTGTGTCTGTCTTTGGCCTCCTTTCTTTTCTAGAACTGTCTGCAAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCT</genome_strand>
        <mrna_strand>TTCGGAGGGGAGATGGTACGGGGTTTTTTGCCCGACTCTCCTCTCTGTGTCTGTCTTTGGCCTCCTTTCTTTTCTAGAACTGTCTGCAAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202711" ref_strand="+" ref_description="SGN-E202711 [cLEC-19-P14]">
      <seq>gagatggtacggggttttttgcccgactctcctctctgggtctgtctttggcctcctttcttttctagaactgtctgcaagatctattcagataaacgtctcatcaaatttggcgttaatgtccccgaacgatggtttcgatatccgcaaagttatagcagcgctctaccttttcaatggataggtatgtcatgcactattaatacaacaatggacaggcgaattctaggaatattcagctccactctcctatcaaaggtacacttgtgaattcctttaactaactttgacacttaacttttttccatgagtaaattgccaatagtagtccgtaaaatctttaattgtttctgagtacaggtagtaattttgttaacatataagagttcattcagcctacttataactattgattaatttatcaaatgaaatagcaaaatgacttattttgagtactggaacagttcaattctaagtcaaatctgtttcacagagatataagataatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="68123" stop="69231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68423" g_stop="68931" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E202711" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68423" e_stop="68931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATGGTACGGGGTTTTTTGCCCGACTCTCCTCTCTGTGTCTGTCTTTGGCCTCCTTTCTTTTCTAGAACTGTCTGCAAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCT</genome_strand>
        <mrna_strand>GAGATGGTACGGGGTTTTTTGCCCGACTCTCCTCTCTGGGTCTGTCTTTGGCCTCCTTTCTTTTCTAGAACTGTCTGCAAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330850" ref_strand="+" ref_description="SGN-E330850 [cTOD-10-L7]">
      <seq>tacggggttttttgcccgactctcctctctgtgtctgtcttgggcctcctttcttttctagaactgtctgcaagatctatgcagataaacgtctcatcaaatttggcgttaatgtccccgaacgatggtttcgatatccgcaaagttatagcagcgctctaccttttcaatggataggtatgtcatgcactattaatacaacaatggacaggcgaattctaggaatattcagctccactctcctatcaaaggtacacttgtgaattcctttaactaactttgacacttaacttttttccatgagtaaattgccaatagtagtccgtaaaatctttaattgtttctgagtacaggtagtaattttgttaacatataagagttcattcagcctacttataactattgattaatttatcaaatgaaatagcaaaatgacttattttgagtactggaacagttcaattctaagtcaaatctgtttcacagagatataagataatctaaccatttgcgaataatgataaattaacatctgtagcttaatatatctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="68130" stop="69282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68430" g_stop="68982" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E330850" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68430" e_stop="68982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGGGGTTTTTTGCCCGACTCTCCTCTCTGTGTCTGTCTTTGGCCTCCTTTCTTTTCTAGAACTGTCTGCAAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGA</genome_strand>
        <mrna_strand>TACGGGGTTTTTTGCCCGACTCTCCTCTCTGTGTCTGTCTTGGGCCTCCTTTCTTTTCTAGAACTGTCTGCAAGATCTATGCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330934" ref_strand="+" ref_description="SGN-E330934 [cTOD-10-M8]">
      <seq>gggttttttgcccgactctcctctctgtgtctgtctttggcctcctttcttttctagaactgtctgcaagatctattcagataaacgtctcatcaaatttggcgttaatgtccccgaacgatggtttcgatatccgcaaagttatagcagcgctctaccttttcaatggataggtatgtcatgcactattaatacaacaatggacaggcgaattctaggaatattcagctccactctcctatcaaaggtacacttgtgaattcctttaactaactttgacacttaacttttttccatgagtaaattgccaatagtagtccgtaaaatctttaattgtttctgagtacaggtagtaattttgttaacatataagagttcattcagcctacttataactattgattaatttatcaaatgaaatagcaaaatgacttattttgagtactggaacagttcaattctaagtcaaatctgtttcacagagatataagataatctaaccatttgcgaataatgataaattaacatctgtagcttaatatatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="68134" stop="69279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68434" g_stop="68979" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E330934" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68434" e_stop="68979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTTTTTTGCCCGACTCTCCTCTCTGTGTCTGTCTTTGGCCTCCTTTCTTTTCTAGAACTGTCTGCAAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCT</genome_strand>
        <mrna_strand>GGGTTTTTTGCCCGACTCTCCTCTCTGTGTCTGTCTTTGGCCTCCTTTCTTTTCTAGAACTGTCTGCAAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273752" ref_strand="+" ref_description="SGN-E273752 [cLEN-7-K12]">
      <seq>ctgtgtctgtctttggcctcctttcttttctagaactgtctgcaagatctattcagataaacgtctcatcaaatttggcgttaatgtccccgaacgatggtttcgatatccgcaaagttatagcagcgctctaccttttcaatggataggtatgtcatgcactattaatacaacaatggacaggcgaattctaggaatattcagctccactctcctatcaaaggtacacttgtgaattcctttaactaactttgacacttaacttttttccatgagtaaattgccaatagtagtccgtaaaatctttaattgtttctgagtacaggtagtaattttgttaacatataagagttcattcagcctacttataactattgattaatttatcaaatgaaatagcaaaatgacttattttgagtactggaacagttcaattctaagtcaaatctgtttcacagagatataagataatctaaccatttgcgaataatgataaattaacatctgtagcttaatatatctggagtgaactagttttccaaatgaggtttagcagttttgacgatctgaaaatttgggtttgagatactgatctctcttttactaatcaaatggtgggctattaaatgagactagattattatttgtttcatcatccatattctaaatctttgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="68158" stop="69433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68458" g_stop="69133" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="676" r_length="676" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E273752" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68458" e_stop="69133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGTCTGTCTTTGGCCTCCTTTCTTTTCTAGAACTGTCTGCAAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAATGAGGTTTAGCAGTTTTGACGATCTGAAAATTTGGGTTTGAGATACTGATCTCTCTTTTACTAATCAAATGGTGGGCTATTAAATGAGACTAGATTATTATTTGTTTCATCATCCATATTCTAAATCTTTGTC</genome_strand>
        <mrna_strand>CTGTGTCTGTCTTTGGCCTCCTTTCTTTTCTAGAACTGTCTGCAAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAATGAGGTTTAGCAGTTTTGACGATCTGAAAATTTGGGTTTGAGATACTGATCTCTCTTTTACTAATCAAATGGTGGGCTATTAAATGAGACTAGATTATTATTTGTTTCATCATCCATATTCTAAATCTTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245834" ref_strand="+" ref_description="SGN-E245834 [cLEF-51-A17]">
      <seq>ctgtctttggcctcctttcttttctagaactgtctgcaagatctattcagataaacgtctcatcaaatttggcgttaatgtccccgaacgatggtttcgatatccgcaaagttatagcagcgctctaccttttcaatggataggtatgtcatgcactattaatacaacaatggacaggcgaattctaggaatattcagctccactctcctatcaaaggtacacttgtgaattcctttaactaactttgacacttaacttttttccatgagtaaattgccaatagtagtccgtaaaatctttaattgtttctgagtacaggtagtaattttgttaacatataagagttcattcagcctacttataact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="68164" stop="69130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68464" g_stop="68830" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E245834" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68464" e_stop="68830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTCTTTGGCCTCCTTTCTTTTCTAGAACTGTCTGCAAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACT</genome_strand>
        <mrna_strand>CTGTCTTTGGCCTCCTTTCTTTTCTAGAACTGTCTGCAAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243486" ref_strand="+" ref_description="SGN-E243486 [cLED-34-L13]">
      <seq>ttttctagaactgtctgcaagatctattcagataaacgtctcatcaaatttggcgttaatgtccccgaacgatggtttcgatatccgcaaagttatagcagcgctctaccttttcaatggataggtatgtcatgcactattaatacaacaatggacaggcgaattctaggaatattcagctccactctcctatcaaaggtacacttgtgaattcctttaactaactttgacacttaacttttttccatgagtaaattgccaatagtagtccgtaaaatctttaattgtttctgagtacaggtagtaattttgttaacatataagagttcattcagcctacttataactattgattaatttatcaaatgaaatagcaaaatgacttattttgagtactggaacagttcaattctaagtcaaatctgtttcacagagatataagataatctaaccatttgcgaataatgataaattaacatctgtagcttaatatatctggagtgaactagttttccaaatgaggtttagcagttttgacgatctgaaaatttgggtttgagatactgatctctcttttactaatcaaatggtgggctattaaatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="68183" stop="69388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68483" g_stop="69088" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="606" r_length="606" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E243486" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68483" e_stop="69088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTAGAACTGTCTGCAAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAATGAGGTTTAGCAGTTTTGACGATCTGAAAATTTGGGTTTGAGATACTGATCTCTCTTTTACTAATCAAATGGTGGGCTATTAAATGAG</genome_strand>
        <mrna_strand>TTTTCTAGAACTGTCTGCAAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAATGAGGTTTAGCAGTTTTGACGATCTGAAAATTTGGGTTTGAGATACTGATCTCTCTTTTACTAATCAAATGGTGGGCTATTAAATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239925" ref_strand="+" ref_description="SGN-E239925 [cLED-29-O17]">
      <seq>ttttctagaactgtctgcaagatctattcagataaacgtctcatcaaatttggcgttaatgtccccgaacgatggtttcgatatccgcaaagttatagcagcgctctaccttttcaatggataggtatgtcatgcactattaatacaacaatggacaggcgaattctaggaatattcagctccactctcctatcaaaggtacacttgtgaattcctttaactaactttgacacttaacttttttccatgagtaaattgccaatagtagtccgtaaaatctttaattgtttctgagtacaggtagtaattttgttaacatataagagttcattcagcctacttataactattgattaatttatcaaatgaaatagcaaaatgacttattttgagtactggaacagttcaattctaagtcaaatctgtttcacagagatataagataatctaaccatttgcgaataatgataaattaacatctgtagcttaatatatctggagtgaactagttttccaaatgaggtttagcagttttgacgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="68183" stop="69325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68483" g_stop="69025" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E239925" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68483" e_stop="69025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTAGAACTGTCTGCAAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAATGAGGTTTAGCAGTTTTGACGATCT</genome_strand>
        <mrna_strand>TTTTCTAGAACTGTCTGCAAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAATGAGGTTTAGCAGTTTTGACGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228419" ref_strand="+" ref_description="SGN-E228419 [cLED-3-P4]">
      <seq>ttttctagaactgtctgcaagatctattcagataaacgtctcatcaaatttggcgttaatgtccccgaacgatggtttcgatatccgcaaagttatagcagcgctctaccttttcaatggataggtatgtcatgcactattaatacaacaatggacaggcgaattctaggaatattcagctccactctcctatcaaaggtacacttgtgaattcctttaactaactttgacacttaacttttttccatgagtaaattgccaatagtagtccgtaaaatctttaattgtttctgagtacaggtagtaattttgttaacatataagagttcattcagcctacttataactattgattaatttatcaaatgaaatagcaaaatgacttattttgagtactggaacagttcaattctaagtcaaatctgtttcacagagatataagataatctaaccatttgcgaataatgataaattaacatctgtagcttaatatatctggagtgaactagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="68183" stop="69294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68483" g_stop="68994" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E228419" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68483" e_stop="68994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTAGAACTGTCTGCAAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTT</genome_strand>
        <mrna_strand>TTTTCTAGAACTGTCTGCAAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233619" ref_strand="+" ref_description="SGN-E233619 [cLED-14-I23]">
      <seq>ttttctagaactgtctgcaagatctattcagataaacgtctcatcaaatttggcgttaatgtccccgaacgatggtttcgatatccgcaaagttatagcagcgctctaccttttcaatggataggtatgtcatgcactattaatacaacaatggacaggcgaattctaggaatattcagctccactctcctatcaaaggtacacttgtgaattcctttaactaactttgacacttaacttttttccatgagtaaattgccaatagtagtccgtaaaatctttaattgtttctgagtacaggtagtaattttgttaacatataagagttcattcagcctacttataactattgattaatttatcaaatgaaatagcaaaatgacttattttgagtactggaacagttcaattctaagtcaaatctgtttcacagagatataagataatctaaccatttgcgaataatgataaattaacatctgtagcttaatatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="68183" stop="69278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68483" g_stop="68978" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E233619" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68483" e_stop="68978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTAGAACTGTCTGCAAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATC</genome_strand>
        <mrna_strand>TTTTCTAGAACTGTCTGCAAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236375" ref_strand="+" ref_description="SGN-E236375 [cLED-13-E2]">
      <seq>aagatctattcagataaacgtctcatcaaatttggcgttaatgtccccgaacgatggtttcgatatccgcaaagttatagcagcgctctaccttttcaatggataggtatgtcatgcactattaatacaacaatggacaggcgaattctaggaatattcagctccactctcctatcaaaggtacacttgtgaattcctttaactaactttgacacttaacttttttccatgagtaaattgccaatagtagtccgtaaaatctttaattgtttctgagtacaggtagtaattttgttaacatataagagttcattcagcctacttataactattgattaatttatcaaatgaaatagcaaaatgacttattttgagtactggaacagttcaattctaagtcaaatctgtttcacagagatataagataatctaaccatttgcgaataatgataaattaacatctgtagcttaatatatctggagtgaactagttttccaaatgaggtttagcagttttgacgatctgaaaatttgggtttgagatactgatctctcttttactaatcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="68201" stop="69370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68501" g_stop="69070" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="570" r_length="570" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E236375" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68501" e_stop="69070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAATGAGGTTTAGCAGTTTTGACGATCTGAAAATTTGGGTTTGAGATACTGATCTCTCTTTTACTAATCAAAT</genome_strand>
        <mrna_strand>AAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAATGAGGTTTAGCAGTTTTGACGATCTGAAAATTTGGGTTTGAGATACTGATCTCTCTTTTACTAATCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231292" ref_strand="+" ref_description="SGN-E231292 [cLED-5-L16]">
      <seq>aagatctattcagataaacgtctcatcaaatttggcgttaatgtccccgaacgatggtttcgatatccgcaaagttatagcagcgctctaccttttcaatggataggtatgtcatgcactattaatacaacaatggacaggcgaattctaggaatattcagctccactctcctatcaaaggtacacttgtgaattcctttaactaactttgacacttaacttttttccatgagtaaattgccaatagtagtccgtaaaatctttaattgtttctgagtacaggtagtaattttgttaacatataagagttcattcagcctacttataactattgattaatttatcaaatgaaatagcaaaatgacttattttgagtactggaacagttcaattctaagtcaaatctgtttcacagagatataagataatctaaccatttgcgaataatgataaattaacatctgtagcttaatatatctggagtgaactagttttccaaatgaggtttagcagttttgacgatctgaaaatttgggtttgagatactgatctctctttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="68201" stop="69362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68501" g_stop="69062" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E231292" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68501" e_stop="69062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAATGAGGTTTAGCAGTTTTGACGATCTGAAAATTTGGGTTTGAGATACTGATCTCTCTTTTACT</genome_strand>
        <mrna_strand>AAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAATGAGGTTTAGCAGTTTTGACGATCTGAAAATTTGGGTTTGAGATACTGATCTCTC-TTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238121" ref_strand="+" ref_description="SGN-E238121 [cLED-22-O8]">
      <seq>aagatctattcagataaacgtctcatcaaatttggcgttaatgtccccgaacgatggtttcgatatccgcaaagttatagcagcgctctaccttttcaatggataggtatgtcatgcactattaatacaacaatggacaggcgaattctaggaatattcagctccactctcctatcaaaggtacacttgtgaattcctttaactaactttgacacttaacttttttccatgagtaaattgccaatagtagtccgtaaaatctttaattgtttctgagtacaggtagtaattttgttaacatataagagttcattcagcctacttataactattgattaatttatcaaatgaaatagcaaaatgacttattttgagtactggaacagttcaattctaagtcaaatctgtttcacagagatataagataatctaaccatttgcgaataatgataaattaacatcttgtagcttaatatatctggagtgaactagtttttcaaatgaggtttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="68201" stop="69310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68501" g_stop="69010" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E238121" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68501" e_stop="69010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATC-TGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAATGAGGTTTAG</genome_strand>
        <mrna_strand>AAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTTGTAGCTTAATATATCTGGAGTGAACTAGTTTTTCAAATGAGGTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237515" ref_strand="+" ref_description="SGN-E237515 [cLED-19-M22]">
      <seq>aagatctattcagataaacgtctcatcaaatttggcgttaatgtccccgaacgatggtttcgatatccgcaaagttatagcagcgctctaccttttcaatggataggtatgtcatgcactattaatacaacaatggacaggcgaattctaggaatattcagctccactctcctatcaaaggtacacttgtgaattcctttaactaactttgacacttaacttttttccatgagtaaattgccaatagtagtccgtaaaatctttaattgtttctgagtacaggtagtaattttgttaacatataagagttcattcagcctacttataactattgattaatttatcaaatgaaatagcaaaatgacttattttgagtactggaacagttcaattctaagtcaaatctgtttcacagagatataagataatctaaccatttgcgaataatgataaattaacatctgtagcttaatatatctggagtgaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="68201" stop="69289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68501" g_stop="68989" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E237515" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68501" e_stop="68989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACT</genome_strand>
        <mrna_strand>AAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241709" ref_strand="+" ref_description="SGN-E241709 [cLED-36-J3]">
      <seq>aagatctattcagataaacgtctcatcaaatttggcgttaatgtccccgaacgatggtttcgatatccgcaaagttatagcagcgctctaccttttcaatggataggtatgtcatgcactattaatacaacaatggacaggcgaattctaggaatattcagctccactctcctatcaaaggtacacttgtgaattcctttaactaactttgacacttaacttttttccatgagtaaattgccaatagtagtccgtaaaatctttaattgtttctgagtacaggtagtaattttgttaacatataagagttcattcagcctacttataactattgattaatttatcaaatgaaatagcaaaatgacttattttgagtactggaacagttcaattctaagtcaaatctgtttcacagagatataagataatctaaccatttgcgaataatgataaattaacatctgtagcttaatatatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="68201" stop="69279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68501" g_stop="68979" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E241709" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68501" e_stop="68979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCT</genome_strand>
        <mrna_strand>AAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236260" ref_strand="+" ref_description="SGN-E236260 [cLED-20-E3]">
      <seq>aagatctattcagataaacgtctcatcaaatttggcgttaatgtccccgaacgatggtttcgatatccgcaaagttatagcagcgctctaccttttcaatggataggtatgtcatgcactattaatacaacaatggacaggcgaattctaggaatattcagctccactctcctatcaaaggtacacttgtgaattcctttaactaactttgacacttaacttttttccatgagtaaattgccaatagtagtccgtaaaatctttaattgtttctgagtacaggtagtaattttgttaacatataagagttcattcagcctacttataactattgattaatttatcaaatgaaatagcaaaatgacttattttgagtactggaacagttcaattctaagtcaaatctgtttcacagagatataagataatctaaccatttgcgaataatgataaattaacatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="68201" stop="69263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68501" g_stop="68963" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E236260" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68501" e_stop="68963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCT</genome_strand>
        <mrna_strand>AAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237544" ref_strand="+" ref_description="SGN-E237544 [cLED-19-J7]">
      <seq>aagatctattcatataaacgtctcatcaaatttggcgttaatgtccccgaacgatggtttcgatatccgcaaagttatagcagcgctctaccttttcaatggattggtatgtcatgcactattaatacaacaatggacaggcgaattctaggaatattcagctccactctcctatcaaaggtacacttgagaattcctttaactaactttgacacttaacttttttccatgagtaaattgccaatagtagtccgtaaaatctttaattgtttctgagtacaggtagtaattttgttaacatataagagttcattcagcctacttataactattgattaatttatcaaatgaaatagcaaaatgacttattttgagtactggaacagttcaattctaagtcaaatctgtttcacagagatataaagataatctaaccatttgcgaataatgataaattaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="68201" stop="69260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68501" g_stop="68960" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E237544" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68501" e_stop="68960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATAT-AAGATAATCTAACCATTTGCGAATAATGATAAATTAACA</genome_strand>
        <mrna_strand>AAGATCTATTCATATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATTGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGAGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAAGATAATCTAACCATTTGCGAATAATGATAAATTAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241949" ref_strand="+" ref_description="SGN-E241949 [cLED-27-C13]">
      <seq>aagatctattcagataaacggctcatcaaatttggcggtaatgtccccgaacgatggtttcgatatccgcaaagttatagcagcgctctaccttttcaatggataggtatgtcatgcactattaatacaacaatggacaggcgaattctaagaatattcagctccactctcctatcaaaggtacacttgtgaattcctttaactaactttgacacttaacttttttccatgagtaaattgccaatagtagtccgtaaaatctttaattgtttctgagtacaggtagtaattttgttaacatataagagttcattcagcctacttataactattgattaatttatcaaatgaaatagcaaaatgacttattttgagtactggaacagttcaattctaagtcaaatctgtttcacagagatataagataatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="68201" stop="69232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68501" g_stop="68932" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E241949" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68501" e_stop="68932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTA</genome_strand>
        <mrna_strand>AAGATCTATTCAGATAAACGGCTCATCAAATTTGGCGGTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAAGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239627" ref_strand="+" ref_description="SGN-E239627 [cLED-23-J10]">
      <seq>aagatctattcagataaacgtctcatcaaatttggcgttaatgtccccgaacgatggtttcgatatccgcaaagttatagcagcgctctaccttttcaatggataggtatgtcatgcactattaatacaacaatggacaggcgaattctaggaatattcagctccactctcctatcaaaggtacacttgtgaattcctttaactaactttgacacttaacttttttccatgagtaaattgccaatagtagtccgtaaaatctttaattgtttctgagtacaggtagtaattttgttaacatataagagttcattcagcctacttataactattgattaatttatcaaatgaaatagcaaaatgacttattttgagtactggaacagttcaattctaagtcaaatctgtttcacagagata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="68201" stop="69220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68501" g_stop="68920" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E239627" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68501" e_stop="68920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATA</genome_strand>
        <mrna_strand>AAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259680" ref_strand="+" ref_description="SGN-E259680 [cLEG-42-M8]">
      <seq>ctattcagataaacgtctcatcaaatttggcgttaatgtccccgaacgatggtttcgatatccgcaaagttatagcagcgctctaccttttcaatggataggtatgtcatgcactattaatacaacaatggacaggcgaattctaggaatattcagctccactctcctatcaaaggtacacttgtgaattcctttaactaactttgacacttaacttttttccatgagtaaattgccaatagtagtccgtaaaatctttaattgtttctgagtacaggtagtaattttgttaacatataagagttcattcagcctacttataactattgattaatttatcaaatgaaatagcaaaatgacttattttgagtactggaacagttcaattctaagtcaaatctgtttcacagagatataagataatctaaccatttgcgaataatgataaattaacatctgtagcttaatatatctggagtgaactagttttccaaatgaggtttagcagttttgacgatctgaaaatttgggtttgagatactgatctctcttttactaatcaaatggtgggctattaaatgagactagattattatttgtttcatcatccatattctaaatctttgtcaagtctgttaaatcaatatctatcactaatgcaaaaagaaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="68206" stop="69477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68506" g_stop="69177" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="672" r_length="672" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E259680" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68506" e_stop="69177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAATGAGGTTTAGCAGTTTTGACGATCTGAAAATTTGGGTTTGAGATACTGATCTCTCTTTTACTAATCAAATGGTGGGCTATTAAATGAGACTAGATTATTATTTGTTTCATCATCCATATTCTAAATCTTTGTCAAGTCTGTTAAATCAATATCTATCACTAATGCAAAAAGAAATCT</genome_strand>
        <mrna_strand>CTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAATGAGGTTTAGCAGTTTTGACGATCTGAAAATTTGGGTTTGAGATACTGATCTCTCTTTTACTAATCAAATGGTGGGCTATTAAATGAGACTAGATTATTATTTGTTTCATCATCCATATTCTAAATCTTTGTCAAGTCTGTTAAATCAATATCTATCACTAATGCAAAAAGAAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244579" ref_strand="+" ref_description="SGN-E244579 [cLED-38-J19]">
      <seq>tctcatcaaatttggcgttaatgtccccgaacgatggtttcgatatccgcaaagttatagcagcgctctaccttttcaatggataggtatgtcatgcactattaatacaacaatggacaggcgaattctaggaatattcagctccactctcctatcaaaggtacacttgtgaattcctttaactaactttgacacttaacttttttccatgagtaaattgccaatagtagtccgtaaaatctttaattgtttctgagtacaggtagtaattttgttaacatataagagttcattcagcctacttataactattgattaatttatcaaatgaaatagcaaaatgacttattttgagtactggaacagttcaattctaagtcaaatctgtttcacagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="68221" stop="69217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68521" g_stop="68917" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E244579" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68521" e_stop="68917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAG</genome_strand>
        <mrna_strand>TCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279183" ref_strand="+" ref_description="SGN-E279183 [cLEL-4-H10](-)">
      <seq>attatcttatatctctggtgaaccagatttgacttagaattgaactgttccagtactcaaaataagtcattttgctatttcatttgataaattaatcaatagttataagtaggctgaatgaactcttatatgttaacaaaattactacctgtactcagaaacaattaaagattttacggactactattggcaatttactcatggaaaaaagttaagtgtcaaagttagttaaaggaattcacaagtgtaccttgtgataggagagtggagctgaatattcctagacttcgcctgtccattgttgtattaatagtgcatgacatacctatcctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="-" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="69229" stop="68297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68929" g_stop="68594" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="-" ref_id="SGN-E279183" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68929" e_stop="68594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATCTTATATCTCTG-TGAAACAGATTTGACTTAGAATTGAACTGTTCCAGTACTCAAAATAAGTCATTTTGCTATTTCATTTGATAAATTAATCAATAGTTATAAGTAGGCTGAATGAACTCTTATATGTTAACAAAATTACTACCTGTACTCAGAAACAATTAAAGATTTTACGGACTACTATTGGCAATTTACTCATGGAAAAAAGTTAAGTGTCAAAGTTAGTTAAAGGAATTCACAAGTGTACCTT-TGATAGGAGAGTGGAGCTGAATATTCCTAGAATTCGCCTGTCCATTGTTGTATTAATAGTGCATGACATACCTATCCATTGAAA</genome_strand>
        <mrna_strand>ATTATCTTATATCTCTGGTGAACCAGATTTGACTTAGAATTGAACTGTTCCAGTACTCAAAATAAGTCATTTTGCTATTTCATTTGATAAATTAATCAATAGTTATAAGTAGGCTGAATGAACTCTTATATGTTAACAAAATTACTACCTGTACTCAGAAACAATTAAAGATTTTACGGACTACTATTGGCAATTTACTCATGGAAAAAAGTTAAGTGTCAAAGTTAGTTAAAGGAATTCACAAGTGTACCTTGTGATAGGAGAGTGGAGCTGAATATTCCTAGACTTCGCCTGTCCATTGTTGTATTAATAGTGCATGACATACCTATCC-TCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279184" ref_strand="+" ref_description="SGN-E279184 [cLEL-4-H12](-)">
      <seq>aataagtcattttgctatttcatttgataaattaatcaatagttataagtaggctgaatgaactcttatatgttaacaaaattactacctgtactcagaaacaattaaagattttacggactactattggcaatttactcatggaaaaaagttaagtgtcaaagttagttaaaggaattcacaagtgtacctttgataggagagtggagctgaatattcctagaattcgcctgtccattgttgtattaatagtgcatgacatacctatcctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="-" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="69170" stop="68297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68870" g_stop="68594" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="-" ref_id="SGN-E279184" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>277</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68870" e_stop="68594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAGTCATTTTGCTATTTCATTTGATAAATTAATCAATAGTTATAAGTAGGCTGAATGAACTCTTATATGTTAACAAAATTACTACCTGTACTCAGAAACAATTAAAGATTTTACGGACTACTATTGGCAATTTACTCATGGAAAAAAGTTAAGTGTCAAAGTTAGTTAAAGGAATTCACAAGTGTACCTTTGATAGGAGAGTGGAGCTGAATATTCCTAGAATTCGCCTGTCCATTGTTGTATTAATAGTGCATGACATACCTATCCATTGAAA</genome_strand>
        <mrna_strand>AATAAGTCATTTTGCTATTTCATTTGATAAATTAATCAATAGTTATAAGTAGGCTGAATGAACTCTTATATGTTAACAAAATTACTACCTGTACTCAGAAACAATTAAAGATTTTACGGACTACTATTGGCAATTTACTCATGGAAAAAAGTTAAGTGTCAAAGTTAGTTAAAGGAATTCACAAGTGTACCTTTGATAGGAGAGTGGAGCTGAATATTCCTAGAATTCGCCTGTCCATTGTTGTATTAATAGTGCATGACATACCTATCC-TCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262754" ref_strand="+" ref_description="SGN-E262754 [cLEG-63-N11]">
      <seq>ttcaatggataggtatgtcatgcactattaatacaacaatggacaggcgaattctaggaatattcagctccactctcctatcaaaggtacacttgtgaattcctttaactaactttgacacttaacttttttccatgagtaaattgccaatagtagtccgtaaaatctttaattgtttctgagtacaggtagtaattttgttaacatataagagttcattcagcctacttataactattgattaatttatcaaatgaaatagcaaaatgacttattttgagtactggaacagttcaattctaagtcaaatctgtttcacagagatataagataatctaaccatttgcgaataatgataaattaacatctgtagcttaatatatctggagtgaactagttttccaaatgaggtttagcagttttgacgatctgaaaatttgggtttgagatactgatctctcttttactaatcaaatggtgggctattaaatgagactagattattatttgtttcatcatccatattctaaatctttgtcaagtctgttaaatcaatatctatcactaatgcaaaaagaaatctgtgtacacgattgccatttatttatttatcatcactgcgaaaattttcatatgtaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="68295" stop="69535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68595" g_stop="69235" g_length="641"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="641" r_length="641" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E262754" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68595" e_stop="69235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAATGAGGTTTAGCAGTTTTGACGATCTGAAAATTTGGGTTTGAGATACTGATCTCTCTTTTACTAATCAAATGGTGGGCTATTAAATGAGACTAGATTATTATTTGTTTCATCATCCATATTCTAAATCTTTGTCAAGTCTGTTAAATCAATATCTATCACTAATGCAAAAAGAAATCTGTGTACACGATTGCCATTTATTTATTTATCATCACTGCGAAAATTTCAATATGTAATT</genome_strand>
        <mrna_strand>TTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAATGAGGTTTAGCAGTTTTGACGATCTGAAAATTTGGGTTTGAGATACTGATCTCTCTTTTACTAATCAAATGGTGGGCTATTAAATGAGACTAGATTATTATTTGTTTCATCATCCATATTCTAAATCTTTGTCAAGTCTGTTAAATCAATATCTATCACTAATGCAAAAAGAAATCTGTGTACACGATTGCCATTTATTTATTTATCATCACTGCGAAAATTTTCATATGTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270945" ref_strand="+" ref_description="SGN-E270945 [cLEM-6-P10]">
      <seq>cactattaatacaacaatggacaggcgaattctaggaatattcagctccactctcctatcaaaggtacacttgtgaattcctttaactaactttgacacttaacttttttccatgagtaaattgccaatagtagtccgtaaaatctttaattgtttctgagtacaggtagtaattttgttaacatataagagttcattcagcctacttataactattgattaatttatcaaatgaaatagcaaaatgacttattttgagtactggaacagttcaattctaagtcaaatctgtttcacagagatataagataatctaaccatttgcgaataatgataaattaacatctgtagcttaatatatctggagtgaactagttttccaaatgaggtttagcagttttgacgatctgaaaatttgggtttgagatactgatctctcttttactaatcaaatggtgggctattaaatgagactagattattatttgtttcatcatccatattctaaatctttgtcaagtctgttaaatcaatatctatcactaatgcaaaaagaaatctgtgtacacgattgccatttatttatttatcatcactgcgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="68317" stop="69519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68617" g_stop="69219" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="603" r_length="603" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E270945" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68617" e_stop="69219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAATGAGGTTTAGCAGTTTTGACGATCTGAAAATTTGGGTTTGAGATACTGATCTCTCTTTTACTAATCAAATGGTGGGCTATTAAATGAGACTAGATTATTATTTGTTTCATCATCCATATTCTAAATCTTTGTCAAGTCTGTTAAATCAATATCTATCACTAATGCAAAAAGAAATCTGTGTACACGATTGCCATTTATTTATTTATCATCACTGCGAAA</genome_strand>
        <mrna_strand>CACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAATGAGGTTTAGCAGTTTTGACGATCTGAAAATTTGGGTTTGAGATACTGATCTCTCTTTTACTAATCAAATGGTGGGCTATTAAATGAGACTAGATTATTATTTGTTTCATCATCCATATTCTAAATCTTTGTCAAGTCTGTTAAATCAATATCTATCACTAATGCAAAAAGAAATCTGTGTACACGATTGCCATTTATTTATTTATCATCACTGCGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260124" ref_strand="+" ref_description="SGN-E260124 [cLEG-52-K1]">
      <seq>cgaattctaggaatattcagctccactctcctatcaaaggtacacttgtgaattcctttaactaactttgacacttaacttttttccatgagtaaattgccaatagtagtccgtaaaatctttaattgtttctgagtacaggtagtaattttgttaacatataagagttcattcagcctacttataactattgattaatttatcaaatgaaatagcaaaatgacttattttgagtactggaacagttcaattctaagtcaaatctgtttcacagagatataagataatctaaccatttgcgaataatgataaattaacatctgtagcttaatatatctggagtgaactagttttccaaatgaggtttagcagttttgacgatctgaaaatttgggtttgagatactgatctctcttttactaatcaaatggtgggctattaaatgagactagattattatttgtttcatcatccatattctaaatctttgtcaagtctgttaaatcaatatctatcactaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="68342" stop="69463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68642" g_stop="69163" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E260124" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68642" e_stop="69163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAATGAGGTTTAGCAGTTTTGACGATCTGAAAATTTGGGTTTGAGATACTGATCTCTCTTTTACTAATCAAATGGTGGGCTATTAAATGAGACTAGATTATTATTTGTTTCATCATCCATATTCTAAATCTTTGTCAAGTCTGTTAAATCAATATCTATCACTAAT</genome_strand>
        <mrna_strand>CGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAATGAGGTTTAGCAGTTTTGACGATCTGAAAATTTGGGTTTGAGATACTGATCTCTCTTTTACTAATCAAATGGTGGGCTATTAAATGAGACTAGATTATTATTTGTTTCATCATCCATATTCTAAATCTTTGTCAAGTCTGTTAAATCAATATCTATCACTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259945" ref_strand="+" ref_description="SGN-E259945 [cLEG-51-M2]">
      <seq>ttctaggaatattcagctccactctcctatcaaaggtacacttgtgaattcctttaactaactttgacacttaacttttttccatgagtaaattgccaatagtagtccgtaaaatctttaattgtttctgagtacaggtagtaattttgttaacatataagagttcattcagcctacttataactattgattaatttatcaaatgaaatagcaaaatgacttattttgagtactggaacagttcaattctaagtcaaatctgtttcacagagatataagataatctaaccatttgcgaataatgataaattaacatctgtagcttaatatatctggagtgaactagttttccaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="68346" stop="69301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68646" g_stop="69001" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E259945" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68646" e_stop="69001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAAT</genome_strand>
        <mrna_strand>TTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261402" ref_strand="+" ref_description="SGN-E261402 [cLEG-57-B17]">
      <seq>aggaatattcagctccactctcctatcaaaggtacacttgtgaattcctttaactaactttgacacttaacttttttccatgagtaaattgccaatagtagtccgtaaaatctttaattgtttctgagtacaggtagtaattttgttaacatataagagttcattcagcctacttataactattgattaatttatcaaatgaaatagcaaaatgacttattttgagtactggaacagttcaattctaagtcaaatctgtttcacagagatataagataatctaaccatttgcgaataatgataaattaacatctgtagcttaatatatctggagtgaactagttttccaaatgaggtttagcagttttgacgatctgaaaatttgggtttgagatactgatctctcttttactaatcaaatggtgggctattaaatgagactagattattatttgtttcatcatccatattctaaatctttgtcaagtctgttaaatcaatatctatcactaatgcaaaaagaaatctgtgtacacgattgccatttatttatttatcatcactgcgaaaatttcaatatgtaatttattattacattaaaggctgtggaactatctttgtatttattttcttgttataatttgcaatggtggatttcaatgggagtgttgttgagctcattctgttatcctagagggtgaatgtttattggggtatgattcagtaagttaattgctggattttgtacaattgttgttcctctgctggccggttctctgtgctggctgacttggaaagtgctgtgcattactgctatggatctgctccatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="68350" stop="69782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68650" g_stop="69482" g_length="833"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="834" r_length="834" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E261402" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68650" e_stop="69482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAATGAGGTTTAGCAGTTTTGACGATCTGAAAATTTGGGTTTGAGATACTGATCTCTCTTTTACTAATCAAATGGTGGGCTATTAAATGAGACTAGATTATTATTTGTTTCATCATCCATATTCTAAATCTTTGTCAAGTCTGTTAAATCAATATCTATCACTAATGCAAAAAGAAATCTGTGTACACGATTGCCATTTATTTATTTATCATCACTGCGAAAATTTCAATATGTAATTTATTATTACATTAAAGGCTGTGGAACTATCTTTGTATTTATTTTCTTGTTATAATTTGCAATGGTGGATTTCAAT-GGAGTGTTGTTGAGCTCATTCTGTTATCCTAGAGGGTGAATGTTTATTGGGGTATGATTCAGTAAGTTAATTGCTGGATTTTGTACAATTGTTGTTCCTCTGCTGGCCGGTTCTCTGTGCATGCTGACTTGGAAGTTGCTGTGCCATACTGCTATGGATCTGCTCCATGCTG</genome_strand>
        <mrna_strand>AGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAATGAGGTTTAGCAGTTTTGACGATCTGAAAATTTGGGTTTGAGATACTGATCTCTCTTTTACTAATCAAATGGTGGGCTATTAAATGAGACTAGATTATTATTTGTTTCATCATCCATATTCTAAATCTTTGTCAAGTCTGTTAAATCAATATCTATCACTAATGCAAAAAGAAATCTGTGTACACGATTGCCATTTATTTATTTATCATCACTGCGAAAATTTCAATATGTAATTTATTATTACATTAAAGGCTGTGGAACTATCTTTGTATTTATTTTCTTGTTATAATTTGCAATGGTGGATTTCAATGGGAGTGTTGTTGAGCTCATTCTGTTATCCTAGAGGGTGAATGTTTATTGGGGTATGATTCAGTAAGTTAATTGCTGGATTTTGTACAATTGTTGTTCCTCTGCTGGCCGGTTCTCTGTGCTGGCTGACTTGGAAAGTGCTGTGCATTACTGCTATGGATCTGCTCCATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261370" ref_strand="+" ref_description="SGN-E261370 [cLEG-57-C16]">
      <seq>attattcagctccactctcctatcaaaggtacacttgtgaattcctttaactaactttgacacttaacttttttccatgagtaaattgccaatagtagtccgtaaaatctttaattgtttctgagtacaggtagtaattttgttaacatataagagttcattcagcctacttataactattgattaatttatcaaatgaaatagcaaaatgacttattttgagtactggaacagttcaattctaagtcaaatctgtttcacagagatataagataatctaaccatttgcgaataatgataaattaacatctgtagcttaatatatctggagtgaactagttttccaaatgaggattagcagttttgacgatctgaaaatttgggtttgagatactgatctctcttttactaatcaaatggtgggctattaaatgagactagattattatttgcttcatcatccatattctaaatctttgtcaagtctgttaaatcaatatctatcactaatgcaaaaagacatctgtgtacacgattgccatttatttatttatcatcactgcgaaaatttcaatatgtaatttattattacattaaaggctgtggaactatctttgnatttattttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="68355" stop="69582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68653" g_stop="69282" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="630" r_length="630" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E261370" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68653" e_stop="69282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAATGAGGTTTAGCAGTTTTGACGATCTGAAAATTTGGGTTTGAGATACTGATCTCTCTTTTACTAATCAAATGGTGGGCTATTAAATGAGACTAGATTATTATTTGTTTCATCATCCATATTCTAAATCTTTGTCAAGTCTGTTAAATCAATATCTATCACTAATGCAAAAAGAAATCTGTGTACACGATTGCCATTTATTTATTTATCATCACTGCGAAAATTTCAATATGTAATTTATTATTACATTAAAGGCTGTGGAACTATCTTTGTATTTATTTTCTT</genome_strand>
        <mrna_strand>ATTATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAATGAGGATTAGCAGTTTTGACGATCTGAAAATTTGGGTTTGAGATACTGATCTCTCTTTTACTAATCAAATGGTGGGCTATTAAATGAGACTAGATTATTATTTGCTTCATCATCCATATTCTAAATCTTTGTCAAGTCTGTTAAATCAATATCTATCACTAATGCAAAAAGACATCTGTGTACACGATTGCCATTTATTTATTTATCATCACTGCGAAAATTTCAATATGTAATTTATTATTACATTAAAGGCTGTGGAACTATCTTTGNATTTATTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259303" ref_strand="+" ref_description="SGN-E259303 [cLEG-43-E7]">
      <seq>ctcctatcaaaggtccacttgtgaattcctttaactaactttgaccacttaacttttttccatgagtaaattgccaatagtagtccgtaaaatctttaattgtttctgagtacaggtagtaattttgttaacatataagagttcattcagcctacttataactattgattaatttatcaaatgaaatagcaaaatgacttattttgagtactggaacagttcaattctaagtcaaatctgtttcacagagatataagataatctaaccatttgcgaataatgataaattaacatctgtagcttaatatatctggagtgaactagttttccaaatgaggtttagcagttttgacgatctgaaaatttgggtttgagatactgatctctcttttactaatcaaatggtgggctattaaatgagactagattattatttgtttcatcatccatattctaaatctttgtcaagtctgttaaatcaatatctatcactaatgcaaaaagaaatctgtgtacacgattgccatttatttatttatcatcactgcgaaaatttcaatatgtaatttattattacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="68369" stop="69547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68669" g_stop="69247" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="580" r_length="580" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E259303" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68669" e_stop="69247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGA-CACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAATGAGGTTTAGCAGTTTTGACGATCTGAAAATTTGGGTTTGAGATACTGATCTCTCTTTTACTAATCAAATGGTGGGCTATTAAATGAGACTAGATTATTATTTGTTTCATCATCCATATTCTAAATCTTTGTCAAGTCTGTTAAATCAATATCTATCACTAATGCAAAAAGAAATCTGTGTACACGATTGCCATTTATTTATTTATCATCACTGCGAAAATTTCAATATGTAATTTATTATTACATT</genome_strand>
        <mrna_strand>CTCCTATCAAAGGTCCACTTGTGAATTCCTTTAACTAACTTTGACCACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAATGAGGTTTAGCAGTTTTGACGATCTGAAAATTTGGGTTTGAGATACTGATCTCTCTTTTACTAATCAAATGGTGGGCTATTAAATGAGACTAGATTATTATTTGTTTCATCATCCATATTCTAAATCTTTGTCAAGTCTGTTAAATCAATATCTATCACTAATGCAAAAAGAAATCTGTGTACACGATTGCCATTTATTTATTTATCATCACTGCGAAAATTTCAATATGTAATTTATTATTACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231106" ref_strand="+" ref_description="SGN-E231106 [cLED-5-L22]">
      <seq>tcctatcaaaggtacacttgtgaattcctttaactaactttgacacttaacttttttccatgagtaaattgccaatagtagtccgtaaaatctttaattgtttctgagtacaggtagtaattttgttaacatataagagttcattcagcctacttataactattgattaatttatcaaatgaaatagcaaaatgacttattttgagtactggaacagttcaattctaagtcaaatctgtttcacagagatataagataatctaaccatttgcgaataatgataaattaacatctgtagcttaatatatctggagtgaactagttttccaaatgaggtttagcagttttgacgatctgaaaatttgggtttgagatactgatctctcttttactaatcaaatggtgggctattaaatgagactagattattatttgtttcatcatccatattctaaatctttgtcaagtctgttaaatcaatatctatcactaatgcaaaaagaaatctgtgtacacgattgccatttatttatttatcatcactgcgaaaatttcaatatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="68370" stop="69531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68670" g_stop="69231" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E231106" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68670" e_stop="69231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAATGAGGTTTAGCAGTTTTGACGATCTGAAAATTTGGGTTTGAGATACTGATCTCTCTTTTACTAATCAAATGGTGGGCTATTAAATGAGACTAGATTATTATTTGTTTCATCATCCATATTCTAAATCTTTGTCAAGTCTGTTAAATCAATATCTATCACTAATGCAAAAAGAAATCTGTGTACACGATTGCCATTTATTTATTTATCATCACTGCGAAAATTTCAATATGT</genome_strand>
        <mrna_strand>TCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAATGAGGTTTAGCAGTTTTGACGATCTGAAAATTTGGGTTTGAGATACTGATCTCTCTTTTACTAATCAAATGGTGGGCTATTAAATGAGACTAGATTATTATTTGTTTCATCATCCATATTCTAAATCTTTGTCAAGTCTGTTAAATCAATATCTATCACTAATGCAAAAAGAAATCTGTGTACACGATTGCCATTTATTTATTTATCATCACTGCGAAAATTTCAATATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240240" ref_strand="+" ref_description="SGN-E240240 [cLED-25-F17]">
      <seq>tcctatcaaaggtacacttgtgaattcctttaactaactttgacacttaacttttttccatgagtaaattgccaatagtagtccgtaaaatctttaattgtttctgagtacaggtagtaattttgttaacatataagagttcattcagcctacttataactattgattaatttatcaaatgaaatagcaaaatgacttattttgagtactggaacagttcaattctaagtcaaatctgtttcacagagatataagataatctaaccatttgcgaataatgataaattaacatctgtagcttaatatatctggagtgaactagttttccaaatgaggtttagcagttttgacgatctgaaaatttgggtttgagatactgatctctcttttactaatcaaatggtgggctattaaatgagactagattattatttgtttcatcatccatattctaaatctttgtcaagtctgttaaatcaatatctatcactaatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="68370" stop="69466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68670" g_stop="69166" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E240240" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68670" e_stop="69166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAATGAGGTTTAGCAGTTTTGACGATCTGAAAATTTGGGTTTGAGATACTGATCTCTCTTTTACTAATCAAATGGTGGGCTATTAAATGAGACTAGATTATTATTTGTTTCATCATCCATATTCTAAATCTTTGTCAAGTCTGTTAAATCAATATCTATCACTAATGCA</genome_strand>
        <mrna_strand>TCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAATGAGGTTTAGCAGTTTTGACGATCTGAAAATTTGGGTTTGAGATACTGATCTCTCTTTTACTAATCAAATGGTGGGCTATTAAATGAGACTAGATTATTATTTGTTTCATCATCCATATTCTAAATCTTTGTCAAGTCTGTTAAATCAATATCTATCACTAATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357936" ref_strand="+" ref_description="SGN-E357936 [cTOS-24-J10]">
      <seq>aaaggtacacttgtgaattcctttaactaactttgacacttaacttttttccatgagtaaattgccaatagtagtccgtaaaatctttaattgtttctgagtacaggtagtaattttgttaacatataagagttcattcagcctacttataactattgattaatttatcaaatgaaatagcaaaatgacttattttgagtactggaacagttcaattctaagtcaaatctgtttcacagagatataagataatctaaccatttgcgaataatgataaattaacatctgtagcttaatatatctggagtgaactagttttccaaatgaggtttagcagttttgacgatctgaaaatttgggtttgagatactgatctctcttttactaatcaaatggtgggctattaaatgagactagattattatttgtttcatcatccatattctaaatctttgtcaagtctgttaaatcaatatctatcactaatgcaaaaagaaatctgtgtacacgattgccatttatttatttatcatcactgcgaaaatttcaatatgtaatttattattacattaaaggctgtggaactatctttgtatttattttcttgttataatttgcaatggtggatttcaatggagtgttgttgagctcattctgttatcctagaaggtgaatgtttatggnggtatgattcagtaagttaattgctgggattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="68377" stop="69691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68677" g_stop="69392" g_length="716"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E357936" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68677" e_stop="69392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAATGAGGTTTAGCAGTTTTGACGATCTGAAAATTTGGGTTTGAGATACTGATCTCTCTTTTACTAATCAAATGGTGGGCTATTAAATGAGACTAGATTATTATTTGTTTCATCATCCATATTCTAAATCTTTGTCAAGTCTGTTAAATCAATATCTATCACTAATGCAAAAAGAAATCTGTGTACACGATTGCCATTTATTTATTTATCATCACTGCGAAAATTTCAATATGTAATTTATTATTACATTAAAGGCTGTGGAACTATCTTTGTATTTATTTTCTTGTTATAATTTGCAATGGTGGATTTCAATGGAGTGTTGTTGAGCTCATTCTGTTATCCTAGAGGGTGAATGTTTATTGGGGTATGATTCAGTAAGTTAATTGCTGGATTTT</genome_strand>
        <mrna_strand>AAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAATGAGGTTTAGCAGTTTTGACGATCTGAAAATTTGGGTTTGAGATACTGATCTCTCTTTTACTAATCAAATGGTGGGCTATTAAATGAGACTAGATTATTATTTGTTTCATCATCCATATTCTAAATCTTTGTCAAGTCTGTTAAATCAATATCTATCACTAATGCAAAAAGAAATCTGTGTACACGATTGCCATTTATTTATTTATCATCACTGCGAAAATTTCAATATGTAATTTATTATTACATTAAAGGCTGTGGAACTATCTTTGTATTTATTTTCTTGTTATAATTTGCAATGGTGGATTTCAATGGAGTGTTGTTGAGCTCATTCTGTTATCCTAGAAGGTGAATGTTTATGGNGGTATGATTCAGTAAGTTAATTGCTGGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354373" ref_strand="+" ref_description="SGN-E354373 [cTOS-17-M23]">
      <seq>aaaggtacacttgtgaattcctttaactaactttgacacttaacttttttccatgagtaaattgccaatagtagtccgtaaaatctttaattgtttctgagtacaggtagtaattttgttaacatataagagttcattcagcctacttataactattgattaatttatcaaatgaaatagcaaaatgacttattttgagtactggaacagttcaattctaagtcaaatctgtttcacagagatataagataatctaaccatttgcgaataatgataaattaacatctgtagcttaatatatctggagtgaactagttttccaaatgaggtttagcagttttgacgatctgaaaatttgggtttgagatactgatctctcttttactaatcaaatggtgggctattaaatgagactagattattatttgtttcatcatccatattctaaatctttgtcaagtctgttaaatcaatatctatcactaatgcaaaaagaaatctgtgtacacgattgccatttatttatttatcatcactgcgaaaatttcaatatgtaatttattattacattaaaggctgnggaactatctttggatttattttcttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="68377" stop="69585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68677" g_stop="69285" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="609" r_length="609" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E354373" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68677" e_stop="69285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAATGAGGTTTAGCAGTTTTGACGATCTGAAAATTTGGGTTTGAGATACTGATCTCTCTTTTACTAATCAAATGGTGGGCTATTAAATGAGACTAGATTATTATTTGTTTCATCATCCATATTCTAAATCTTTGTCAAGTCTGTTAAATCAATATCTATCACTAATGCAAAAAGAAATCTGTGTACACGATTGCCATTTATTTATTTATCATCACTGCGAAAATTTCAATATGTAATTTATTATTACATTAAAGGCTGTGGAACTATCTTTGTATTTATTTTCTTGTT</genome_strand>
        <mrna_strand>AAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAATGAGGTTTAGCAGTTTTGACGATCTGAAAATTTGGGTTTGAGATACTGATCTCTCTTTTACTAATCAAATGGTGGGCTATTAAATGAGACTAGATTATTATTTGTTTCATCATCCATATTCTAAATCTTTGTCAAGTCTGTTAAATCAATATCTATCACTAATGCAAAAAGAAATCTGTGTACACGATTGCCATTTATTTATTTATCATCACTGCGAAAATTTCAATATGTAATTTATTATTACATTAAAGGCTGNGGAACTATCTTTGGATTTATTTTCTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244752" ref_strand="+" ref_description="SGN-E244752 [cLED-38-L5]">
      <seq>aaaggtacacttgtgaattcctttaactaactttgacacttaacttttttccatgagtaaattgccaatagtagtccgtaaaatctttaattgtttctgagtacaggtagtaattttgttaacatataagagttcattcagcctacttataactattgattaatttatcaaatgaaatagcaaaatgacttattttgagtactggaacagttcaattctaagtcaaatctgtttcacagagatataagataatctaaccatttgcgaataatgataaattaacatctgtagcttaatatatctggagtgaactagttttccaaatgaggtttagcagttttgacgatctgaaaatttgggtttgagatactgatctctcttttactaatcaaatggtgggctattaaatgagactagattattatttgtttcatcatccatattctaaatctttgtcaagtctgttaaatcaatatctatcactaatgcaaaaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="68377" stop="69473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68677" g_stop="69173" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E244752" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68677" e_stop="69173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAATGAGGTTTAGCAGTTTTGACGATCTGAAAATTTGGGTTTGAGATACTGATCTCTCTTTTACTAATCAAATGGTGGGCTATTAAATGAGACTAGATTATTATTTGTTTCATCATCCATATTCTAAATCTTTGTCAAGTCTGTTAAATCAATATCTATCACTAATGCAAAAAGAA</genome_strand>
        <mrna_strand>AAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAATGAGGTTTAGCAGTTTTGACGATCTGAAAATTTGGGTTTGAGATACTGATCTCTCTTTTACTAATCAAATGGTGGGCTATTAAATGAGACTAGATTATTATTTGTTTCATCATCCATATTCTAAATCTTTGTCAAGTCTGTTAAATCAATATCTATCACTAATGCAAAAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249238" ref_strand="+" ref_description="SGN-E249238 [cLEF-50-J17]">
      <seq>ctttaactaactttgacacttaacttttttccatgagtaaattgccaatagtagtccgtaaaatctttaattgtttctgagtacaggtagtaattttgttaacatataagagttcattcagcccttataactattgattaatttatcaaatgaaatagcaaaatgacttattttgagtactggaacagttcaattctaagtcaaatctgtttcacagagatataagataatctaaccatttgcgaataatgataaattaacatctgtagcttaatatatctggagtgaactagttttccaaatgaggtttagcagttttgacgatctgaaaatttgggtttgagatactgatctctcttttactaatcaaatggtgggctattaaatgagactagattattatttgtttcatcatccatattctaaatctttgtcaagtctgttaaatcaatatctatcactaatgcaaaaagaaatctgtgtacacgattgccatttatttatttatcatcactgcgaaaatttcaatatgtaatttattattacattaaaagctgtggaactatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="68397" stop="69568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68697" g_stop="69268" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="570" r_length="570" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E249238" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68697" e_stop="69268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAATGAGGTTTAGCAGTTTTGACGATCTGAAAATTTGGGTTTGAGATACTGATCTCTCTTTTACTAATCAAATGGTGGGCTATTAAATGAGACTAGATTATTATTTGTTTCATCATCCATATTCTAAATCTTTGTCAAGTCTGTTAAATCAATATCTATCACTAATGCAAAAAGAAATCTGTGTACACGATTGCCATTTATTTATTTATCATCACTGCGAAAATTTCAATATGTAATTTATTATTACATTAAAGGCTGTGGAACTATCTTT</genome_strand>
        <mrna_strand>CTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCC--CTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAATGAGGTTTAGCAGTTTTGACGATCTGAAAATTTGGGTTTGAGATACTGATCTCTCTTTTACTAATCAAATGGTGGGCTATTAAATGAGACTAGATTATTATTTGTTTCATCATCCATATTCTAAATCTTTGTCAAGTCTGTTAAATCAATATCTATCACTAATGCAAAAAGAAATCTGTGTACACGATTGCCATTTATTTATTTATCATCACTGCGAAAATTTCAATATGTAATTTATTATTACATTAAAAGCTGTGGAACTATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201567" ref_strand="+" ref_description="SGN-E201567 [cLEC-11-A1]">
      <seq>aaaatctttaattgtttctgagtacaggtagtaattttgttaacatataagagttcattcagcctacttataactattgattaatttatcaaatgaaatagcaaaatgacttattttgagtactggaacagttcaattctaagtcaaatctgtttcacagagatataagataatctaaccatttgcgaataatgataaattaacatctgtagcttaatatatctggagtgaactagttttccaaatgaggtttatcagttttgacgatctgaaaatttgggtttgagatactgatctctcttttactaatcaaatggtgggctattaaatgagactagattattatttgtttcatcatccatattctaaatctttgtcaagtctgttaaatcaatatctatcactaatgcaaaaagaaatctgtgtacacgattgccatttatttatttatcatcactgcgaaaatttcaatatgtaatttattattacattaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="68456" stop="69550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68756" g_stop="69250" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E201567" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201567" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68756" e_stop="69250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAATGAGGTTTAGCAGTTTTGACGATCTGAAAATTTGGGTTTGAGATACTGATCTCTCTTTTACTAATCAAATGGTGGGCTATTAAATGAGACTAGATTATTATTTGTTTCATCATCCATATTCTAAATCTTTGTCAAGTCTGTTAAATCAATATCTATCACTAATGCAAAAAGAAATCTGTGTACACGATTGCCATTTATTTATTTATCATCACTGCGAAAATTTCAATATGTAATTTATTATTACATTAAA</genome_strand>
        <mrna_strand>AAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAATGAGGTTTATCAGTTTTGACGATCTGAAAATTTGGGTTTGAGATACTGATCTCTCTTTTACTAATCAAATGGTGGGCTATTAAATGAGACTAGATTATTATTTGTTTCATCATCCATATTCTAAATCTTTGTCAAGTCTGTTAAATCAATATCTATCACTAATGCAAAAAGAAATCTGTGTACACGATTGCCATTTATTTATTTATCATCACTGCGAAAATTTCAATATGTAATTTATTATTACATTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258186" ref_strand="+" ref_description="SGN-E258186 [cLEG-49-I4]">
      <seq>atctttaattgtttctgagtacaggtagtaattttgttaacatataagagttcattcagcctacttataactattgattaatttatcaaatgaaatagcaaaatgacttattttgagtactggaacagttcaattctaagtcaaatctgtttcacagagatataagataatctaaccatttgcgaataatgataaattaacatctgtagcttaatatatctggagtgaactagttttccaaatgaggtttagcagttttgacgatctgaaaatttgggtttgagatactgatctctcttttactaatcaaatggtgggctattaaatgagactagattattatttgtttcatcatccatattctaaatctttgtcaagtctgttaaatcaatatctatcactaatgcaaaaagaaatctgtgtacacgattgccatttatttatttatcatcactgcgaaaatttcaatatgtaatttattattacattaaaggctgtggaactatctttgtatttattttcttgttataatttgcaatggtggatttcaatggagtgttgttgagctcattctgttatcctagagggtgaatgtttattggggtatgattcagtaagttaattgctggattttgtacaattgttgttcctctgctggccggttctctgtgcatgctgacttggaaagtgctgtgccatactgctatggatctgctccatgctgaaatncattattatgttctactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="68459" stop="69807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68759" g_stop="69507" g_length="749"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="749" r_length="749" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E258186" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68759" e_stop="69507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAATGAGGTTTAGCAGTTTTGACGATCTGAAAATTTGGGTTTGAGATACTGATCTCTCTTTTACTAATCAAATGGTGGGCTATTAAATGAGACTAGATTATTATTTGTTTCATCATCCATATTCTAAATCTTTGTCAAGTCTGTTAAATCAATATCTATCACTAATGCAAAAAGAAATCTGTGTACACGATTGCCATTTATTTATTTATCATCACTGCGAAAATTTCAATATGTAATTTATTATTACATTAAAGGCTGTGGAACTATCTTTGTATTTATTTTCTTGTTATAATTTGCAATGGTGGATTTCAATGGAGTGTTGTTGAGCTCATTCTGTTATCCTAGAGGGTGAATGTTTATTGGGGTATGATTCAGTAAGTTAATTGCTGGATTTTGTACAATTGTTGTTCCTCTGCTGGCCGGTTCTCTGTGCATGCTGACTTGGAAGTTGCTGTGCCATACTGCTATGGATCTGCTCCATGCTGAAATCAATTATTATGTTCTACTTTT</genome_strand>
        <mrna_strand>ATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAATGAGGTTTAGCAGTTTTGACGATCTGAAAATTTGGGTTTGAGATACTGATCTCTCTTTTACTAATCAAATGGTGGGCTATTAAATGAGACTAGATTATTATTTGTTTCATCATCCATATTCTAAATCTTTGTCAAGTCTGTTAAATCAATATCTATCACTAATGCAAAAAGAAATCTGTGTACACGATTGCCATTTATTTATTTATCATCACTGCGAAAATTTCAATATGTAATTTATTATTACATTAAAGGCTGTGGAACTATCTTTGTATTTATTTTCTTGTTATAATTTGCAATGGTGGATTTCAATGGAGTGTTGTTGAGCTCATTCTGTTATCCTAGAGGGTGAATGTTTATTGGGGTATGATTCAGTAAGTTAATTGCTGGATTTTGTACAATTGTTGTTCCTCTGCTGGCCGGTTCTCTGTGCATGCTGACTTGGAAAGTGCTGTGCCATACTGCTATGGATCTGCTCCATGCTGAAATNCATTATTATGTTCTACTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265994" ref_strand="+" ref_description="SGN-E265994 [cLEI-6-P17]">
      <seq>aagagttcattcagcctacttataactattgattaatttatcaaatgaaatagcaaaatgacttattttgagtactggaacagttcaattctaagtcaaatctgtttcacagagatataagataatctaaccatttgcgaataatgataaattaacatctgtagcttaatatatctggagtgaactagttttccaaatgaggtttagcagttttgacgatctgaaaatttgggtttgagatactgatctctcttttactaatcaaatggtgggctattaaatgagactagattattatttgtttcatcatccatattctaaatctttgtcaagtctgttaaatcaatatctatcactaatgcaaaaagaaatctgtgtacacgattgccatttatttatttatcatcactgcgaaaatttcaatatgtaatttattattacattaaaggctgtggaactatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="68504" stop="69566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68804" g_stop="69266" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E265994" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68804" e_stop="69266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAATGAGGTTTAGCAGTTTTGACGATCTGAAAATTTGGGTTTGAGATACTGATCTCTCTTTTACTAATCAAATGGTGGGCTATTAAATGAGACTAGATTATTATTTGTTTCATCATCCATATTCTAAATCTTTGTCAAGTCTGTTAAATCAATATCTATCACTAATGCAAAAAGAAATCTGTGTACACGATTGCCATTTATTTATTTATCATCACTGCGAAAATTTCAATATGTAATTTATTATTACATTAAAGGCTGTGGAACTATCT</genome_strand>
        <mrna_strand>AAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAATGAGGTTTAGCAGTTTTGACGATCTGAAAATTTGGGTTTGAGATACTGATCTCTCTTTTACTAATCAAATGGTGGGCTATTAAATGAGACTAGATTATTATTTGTTTCATCATCCATATTCTAAATCTTTGTCAAGTCTGTTAAATCAATATCTATCACTAATGCAAAAAGAAATCTGTGTACACGATTGCCATTTATTTATTTATCATCACTGCGAAAATTTCAATATGTAATTTATTATTACATTAAAGGCTGTGGAACTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228156" ref_strand="+" ref_description="SGN-E228156 [cLED-2-A13]">
      <seq>attcagcctacttataactattgattaatttatcaaatgaaatagcaaaatgacttattttgagtactggaacagttcaattctaagtcaaatctgtttcacagagatataagataatctaaccatttgcgaataatgataaattaacatctgtagcttaatatatctggagtgaactagttttccaaatgaggtttagcagttttgacgatctgaaaatttgggtttgagatactgatctctcttttactaatcaaatggtgggctattaaatgagactagattattatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="68512" stop="69402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68812" g_stop="69102" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E228156" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68812" e_stop="69102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAATGAGGTTTAGCAGTTTTGACGATCTGAAAATTTGGGTTTGAGATACTGATCTCTCTTTTACTAATCAAATGGTGGGCTATTAAATGAGACTAGATTATTATT</genome_strand>
        <mrna_strand>ATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAATGAGGTTTAGCAGTTTTGACGATCTGAAAATTTGGGTTTGAGATACTGATCTCTCTTTTACTAATCAAATGGTGGGCTATTAAATGAGACTAGATTATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262860" ref_strand="+" ref_description="SGN-E262860 [cLEG-59-C18]">
      <seq>caaatgaaatagcaaaatgacttattttgagtactggaacagttcaattctaagtcaaatctgtttcacagagatataagataatctaaccatttgcgaataatgataaattaacatctgtagcttaatatatctggagtgaactagttttccaaatgaggtttagcagttttgacgatctgaaaatttgggtttgagatactgatctctcttttactaatcaaatggtgggctattaaatgagactagattattatttgtttcatcatccatattctaaatctttgtcaagtctgttaaatcaatatctatcactaatgcaaaaagaaatctgtgtacacgattgccatttatttatttatcatcactgcgaaaatttcaatatgtaatttattattacattaaaggctgtggaactatctttgtatttattttcttgttataatttgcaatggtggatttcaatggagtgttgttgagctcattctgttatcctagagggtgaatgtttattggggtatgattcagtaagttaattgctggattttgtacaattgttgttcctctgctggccggttctctgtgctgcttgacttggaagttgctgtgccatactgctatggatctgctccatgctgaaatcaattattatgttctacttttggacttgtttccttgatcacgctcttggaatttcctgttttatatgcggtcatatttctggtgcattcaagttttatgtggaaattctcaactctctttacctgcaccatcttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="68545" stop="69922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68845" g_stop="69622" g_length="778"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="778" r_length="778" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E262860" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68845" e_stop="69622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAATGAGGTTTAGCAGTTTTGACGATCTGAAAATTTGGGTTTGAGATACTGATCTCTCTTTTACTAATCAAATGGTGGGCTATTAAATGAGACTAGATTATTATTTGTTTCATCATCCATATTCTAAATCTTTGTCAAGTCTGTTAAATCAATATCTATCACTAATGCAAAAAGAAATCTGTGTACACGATTGCCATTTATTTATTTATCATCACTGCGAAAATTTCAATATGTAATTTATTATTACATTAAAGGCTGTGGAACTATCTTTGTATTTATTTTCTTGTTATAATTTGCAATGGTGGATTTCAATGGAGTGTTGTTGAGCTCATTCTGTTATCCTAGAGGGTGAATGTTTATTGGGGTATGATTCAGTAAGTTAATTGCTGGATTTTGTACAATTGTTGTTCCTCTGCTGGCCGGTTCTCTGTGCATGC-TGACTTGGAAGTTGCTGTGCCATACTGCTATGGATCTGCTCCATGCTGAAATCAATTATTATGTTCTACTTTTGGACTTGTTTCCTTGATCACGCTCTTGGAATTTCCTGTTTTATATGCCGTCATATTTCTGGTGCAATCAAGTTTTATGTGGAAATTCTCAACTCTCTTTACCTGCACCATCTTCA</genome_strand>
        <mrna_strand>CAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAATGAGGTTTAGCAGTTTTGACGATCTGAAAATTTGGGTTTGAGATACTGATCTCTCTTTTACTAATCAAATGGTGGGCTATTAAATGAGACTAGATTATTATTTGTTTCATCATCCATATTCTAAATCTTTGTCAAGTCTGTTAAATCAATATCTATCACTAATGCAAAAAGAAATCTGTGTACACGATTGCCATTTATTTATTTATCATCACTGCGAAAATTTCAATATGTAATTTATTATTACATTAAAGGCTGTGGAACTATCTTTGTATTTATTTTCTTGTTATAATTTGCAATGGTGGATTTCAATGGAGTGTTGTTGAGCTCATTCTGTTATCCTAGAGGGTGAATGTTTATTGGGGTATGATTCAGTAAGTTAATTGCTGGATTTTGTACAATTGTTGTTCCTCTGCTGGCCGGTTCTCTGTGC-TGCTTGACTTGGAAGTTGCTGTGCCATACTGCTATGGATCTGCTCCATGCTGAAATCAATTATTATGTTCTACTTTTGGACTTGTTTCCTTGATCACGCTCTTGGAATTTCCTGTTTTATATGCGGTCATATTTCTGGTGCATTCAAGTTTTATGTGGAAATTCTCAACTCTCTTTACCTGCACCATCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301759" ref_strand="+" ref_description="SGN-E301759 [cLEX-9-N14]">
      <seq>atctgtagcttaatatatctggagtgaactagttttccaaatgaggtttagcagttttgacgatctgaaaatttgggtttgagatactgatctctcttttactaatcaaatggtgggctattaaatgagactagattattatttgtttcatcatccatattctaaatctttgtcaagtctgttaaatcaatatctatcactaatgcaaaaagaaatctgtgtacacgattgccatttatttatttatcatcactgcgaaaatttcaatatgtaatttattattacattaaaggctgtggaactatctttgtatttattttcttgttataatttgcaatggtggatttcaatggagtgttgttgagctcattctgttatcctagagggtgaatgtttattggggtatgattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="68660" stop="69670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68960" g_stop="69370" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E301759" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68960" e_stop="69370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAATGAGGTTTAGCAGTTTTGACGATCTGAAAATTTGGGTTTGAGATACTGATCTCTCTTTTACTAATCAAATGGTGGGCTATTAAATGAGACTAGATTATTATTTGTTTCATCATCCATATTCTAAATCTTTGTCAAGTCTGTTAAATCAATATCTATCACTAATGCAAAAAGAAATCTGTGTACACGATTGCCATTTATTTATTTATCATCACTGCGAAAATTTCAATATGTAATTTATTATTACATTAAAGGCTGTGGAACTATCTTTGTATTTATTTTCTTGTTATAATTTGCAATGGTGGATTTCAATGGAGTGTTGTTGAGCTCATTCTGTTATCCTAGAGGGTGAATGTTTATTGGGGTATGATTC</genome_strand>
        <mrna_strand>ATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAATGAGGTTTAGCAGTTTTGACGATCTGAAAATTTGGGTTTGAGATACTGATCTCTCTTTTACTAATCAAATGGTGGGCTATTAAATGAGACTAGATTATTATTTGTTTCATCATCCATATTCTAAATCTTTGTCAAGTCTGTTAAATCAATATCTATCACTAATGCAAAAAGAAATCTGTGTACACGATTGCCATTTATTTATTTATCATCACTGCGAAAATTTCAATATGTAATTTATTATTACATTAAAGGCTGTGGAACTATCTTTGTATTTATTTTCTTGTTATAATTTGCAATGGTGGATTTCAATGGAGTGTTGTTGAGCTCATTCTGTTATCCTAGAGGGTGAATGTTTATTGGGGTATGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251307" ref_strand="+" ref_description="SGN-E251307 [cLEG-10-J2]">
      <seq>tggagtgaactagttttccaaatgaggtttagcagttttgacgatctgaaaatttgggtttgagatactgatctctcttttactaatcaaatggtgggctattaaatgagactagattattatttgtttcatcatccatattctaaatctttgtcaagtctgttaaatcaatatctatcactaatgcaaaaagaaatctgtgtacacgattgccatttatttatttatcatcactgcgaaaatttcaatatgtaatttattattacattaaaggctgtggaactatctttgtatttattttcttgttataatttgcaatggtggatttcaatggagtgttgttgagctcattctgttatcctagagggtgaatgtttattggggtatgattcagtaagttaattgctggattttgtacaattgttgttcctctgctggccggttctctgtgcatgctgacttggaagttgctgtgccatactgctatggatctgctccatgctgaaatcaattattatgttctacttttggacttgtttccttgatcacgctcttggaatttcctgttttatatgccgtcatatttctggtgcaatcaagttttatgtggaaattctcaactctctttacctgcaccatcttcacttggaatacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="68679" stop="69934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68979" g_stop="69634" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="656" r_length="656" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E251307" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68979" e_stop="69634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGTGAACTAGTTTTCCAAATGAGGTTTAGCAGTTTTGACGATCTGAAAATTTGGGTTTGAGATACTGATCTCTCTTTTACTAATCAAATGGTGGGCTATTAAATGAGACTAGATTATTATTTGTTTCATCATCCATATTCTAAATCTTTGTCAAGTCTGTTAAATCAATATCTATCACTAATGCAAAAAGAAATCTGTGTACACGATTGCCATTTATTTATTTATCATCACTGCGAAAATTTCAATATGTAATTTATTATTACATTAAAGGCTGTGGAACTATCTTTGTATTTATTTTCTTGTTATAATTTGCAATGGTGGATTTCAATGGAGTGTTGTTGAGCTCATTCTGTTATCCTAGAGGGTGAATGTTTATTGGGGTATGATTCAGTAAGTTAATTGCTGGATTTTGTACAATTGTTGTTCCTCTGCTGGCCGGTTCTCTGTGCATGCTGACTTGGAAGTTGCTGTGCCATACTGCTATGGATCTGCTCCATGCTGAAATCAATTATTATGTTCTACTTTTGGACTTGTTTCCTTGATCACGCTCTTGGAATTTCCTGTTTTATATGCCGTCATATTTCTGGTGCAATCAAGTTTTATGTGGAAATTCTCAACTCTCTTTACCTGCACCATCTTCACTTGGAATACAC</genome_strand>
        <mrna_strand>TGGAGTGAACTAGTTTTCCAAATGAGGTTTAGCAGTTTTGACGATCTGAAAATTTGGGTTTGAGATACTGATCTCTCTTTTACTAATCAAATGGTGGGCTATTAAATGAGACTAGATTATTATTTGTTTCATCATCCATATTCTAAATCTTTGTCAAGTCTGTTAAATCAATATCTATCACTAATGCAAAAAGAAATCTGTGTACACGATTGCCATTTATTTATTTATCATCACTGCGAAAATTTCAATATGTAATTTATTATTACATTAAAGGCTGTGGAACTATCTTTGTATTTATTTTCTTGTTATAATTTGCAATGGTGGATTTCAATGGAGTGTTGTTGAGCTCATTCTGTTATCCTAGAGGGTGAATGTTTATTGGGGTATGATTCAGTAAGTTAATTGCTGGATTTTGTACAATTGTTGTTCCTCTGCTGGCCGGTTCTCTGTGCATGCTGACTTGGAAGTTGCTGTGCCATACTGCTATGGATCTGCTCCATGCTGAAATCAATTATTATGTTCTACTTTTGGACTTGTTTCCTTGATCACGCTCTTGGAATTTCCTGTTTTATATGCCGTCATATTTCTGGTGCAATCAAGTTTTATGTGGAAATTCTCAACTCTCTTTACCTGCACCATCTTCACTTGGAATACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316733" ref_strand="+" ref_description="SGN-E316733 [cTOB-5-F14]">
      <seq>actaatcaaatggttggctattaaatgagactagattattatttgtttcatcatccatattctaaatctttgtcaagtctgttaaatcaatatctatcactaatgcaaaaagaaatctgtgtacacgattgccatttatttatttatcatcactgcgaaaatttcaatatgtaatttattattacattaaaggctgtggaactatctttgtatttattttcttgttataatttgcaatggtggatttcaatggagtgttgttgagctcattctgttatcctacagggtgaatgtttattggggtatgattcagtaagttaattgctggattttgtacaattgttgttcctctgctggccggttctctgtgcatgctgacttggaagttgctgtgccatactgctatggatctgctccatgctgaaatcaattattatgttctacttttggacttgtttccttgatcacgctcttggaatttcctgttgtatatgccgccatatttctggtgcaatcaagttttatgtggaaattcttaactctctttacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="68760" stop="69911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69060" g_stop="69611" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E316733" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69060" e_stop="69611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAATCAAATGGTGGGCTATTAAATGAGACTAGATTATTATTTGTTTCATCATCCATATTCTAAATCTTTGTCAAGTCTGTTAAATCAATATCTATCACTAATGCAAAAAGAAATCTGTGTACACGATTGCCATTTATTTATTTATCATCACTGCGAAAATTTCAATATGTAATTTATTATTACATTAAAGGCTGTGGAACTATCTTTGTATTTATTTTCTTGTTATAATTTGCAATGGTGGATTTCAATGGAGTGTTGTTGAGCTCATTCTGTTATCCTAGAGGGTGAATGTTTATTGGGGTATGATTCAGTAAGTTAATTGCTGGATTTTGTACAATTGTTGTTCCTCTGCTGGCCGGTTCTCTGTGCATGCTGACTTGGAAGTTGCTGTGCCATACTGCTATGGATCTGCTCCATGCTGAAATCAATTATTATGTTCTACTTTTGGACTTGTTTCCTTGATCACGCTCTTGGAATTTCCTGTTTTATATGCCGTCATATTTCTGGTGCAATCAAGTTTTATGTGGAAATTCTCAACTCTCTTTACCTG</genome_strand>
        <mrna_strand>ACTAATCAAATGGTTGGCTATTAAATGAGACTAGATTATTATTTGTTTCATCATCCATATTCTAAATCTTTGTCAAGTCTGTTAAATCAATATCTATCACTAATGCAAAAAGAAATCTGTGTACACGATTGCCATTTATTTATTTATCATCACTGCGAAAATTTCAATATGTAATTTATTATTACATTAAAGGCTGTGGAACTATCTTTGTATTTATTTTCTTGTTATAATTTGCAATGGTGGATTTCAATGGAGTGTTGTTGAGCTCATTCTGTTATCCTACAGGGTGAATGTTTATTGGGGTATGATTCAGTAAGTTAATTGCTGGATTTTGTACAATTGTTGTTCCTCTGCTGGCCGGTTCTCTGTGCATGCTGACTTGGAAGTTGCTGTGCCATACTGCTATGGATCTGCTCCATGCTGAAATCAATTATTATGTTCTACTTTTGGACTTGTTTCCTTGATCACGCTCTTGGAATTTCCTGTTGTATATGCCGCCATATTTCTGGTGCAATCAAGTTTTATGTGGAAATTCTTAACTCTCTTTACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285200" ref_strand="+" ref_description="SGN-E285200 [cLER-20-J5]">
      <seq>tattttcttgttataatttgcaatggtggatttcaatggagtgttgttgagctcattctgttatcctagagggtgaatgtttattggggtatgattcagtaagttaattgctggattttgtacaattgttgttcctctgctggccggttctctgtgcatgctgacttggaagttgctgtgccatactgctatggatctgctccatgctgaaatcaattattatgttctacttttggacttgtttccttgatcacgctcttggaatttcctgttttatatgccgtcatatttctggtgcaatcaagttttatgtggaaattctcaactctctttacctgcaccatcttcacttggaatacacaatgagcaaacccaattgtcagcttcttcgttctagcaagcctgataaggaagcatcttgcaagtgtgttaggataactattggaaacttgcttgacatttccgaagtttcttgactaagttgctgctgtctgtgaatcatggtactctcatcaaaagctgtaaacaatttctacgctcttggaattacctgttttatatgctgtctgtgttaccatttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="68974" stop="70155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69274" g_stop="69855" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E285200" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69274" e_stop="69855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTCTTGTTATAATTTGCAATGGTGGATTTCAATGGAGTGTTGTTGAGCTCATTCTGTTATCCTAGAGGGTGAATGTTTATTGGGGTATGATTCAGTAAGTTAATTGCTGGATTTTGTACAATTGTTGTTCCTCTGCTGGCCGGTTCTCTGTGCATGCTGACTTGGAAGTTGCTGTGCCATACTGCTATGGATCTGCTCCATGCTGAAATCAATTATTATGTTCTACTTTTGGACTTGTTTCCTTGATCACGCTCTTGGAATTTCCTGTTTTATATGCCGTCATATTTCTGGTGCAATCAAGTTTTATGTGGAAATTCTCAACTCTCTTTACCTGCACCATCTTCACTTGGAATACACAATGAGCAAACCCAATTGTCAGCTTCTTCGTTCTAGCAAGCCTGATAAGGAAGCATCTTGCAAGTGTGTTAGGATAACTATTGGAAACTTGCTTGACATTTCCGAAGTTTCTTGACTAAGTTGCTGCTGTCTGTGAATCATGGTACTCTCATCAAAAGCTGTAAACAATTTCTACGCTCTTGGAATTACCTGTTTTATATGCTGTCTGTGTTACCATTTTA</genome_strand>
        <mrna_strand>TATTTTCTTGTTATAATTTGCAATGGTGGATTTCAATGGAGTGTTGTTGAGCTCATTCTGTTATCCTAGAGGGTGAATGTTTATTGGGGTATGATTCAGTAAGTTAATTGCTGGATTTTGTACAATTGTTGTTCCTCTGCTGGCCGGTTCTCTGTGCATGCTGACTTGGAAGTTGCTGTGCCATACTGCTATGGATCTGCTCCATGCTGAAATCAATTATTATGTTCTACTTTTGGACTTGTTTCCTTGATCACGCTCTTGGAATTTCCTGTTTTATATGCCGTCATATTTCTGGTGCAATCAAGTTTTATGTGGAAATTCTCAACTCTCTTTACCTGCACCATCTTCACTTGGAATACACAATGAGCAAACCCAATTGTCAGCTTCTTCGTTCTAGCAAGCCTGATAAGGAAGCATCTTGCAAGTGTGTTAGGATAACTATTGGAAACTTGCTTGACATTTCCGAAGTTTCTTGACTAAGTTGCTGCTGTCTGTGAATCATGGTACTCTCATCAAAAGCTGTAAACAATTTCTACGCTCTTGGAATTACCTGTTTTATATGCTGTCTGTGTTACCATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287891" ref_strand="+" ref_description="SGN-E287891 [cLES-19-F9]">
      <seq>ttcaatggagtgttgttgagctcattctgttatcctagagggtgaatgtttattggggtatgattcagtaagttaattgctggattttgtacaattgttgttcctctgctggccggttctctgtgcatgctgacttggaagttgctgtgccatactgctatggatctgctccatgctgaaatcaattattatgttctacttttggacttgtttccttgatcacgctcttggaatttcctgttttatatgccgtcatatttctggtgcaatcaagttttatgtggaaattctcaactctctttacctgcaccatcttcacttggaatacacaatgagcaaacccaattgtcagcttcttcgttctagcaagcctgataaggaagcatcttgcaagtgtgttaggataactattggaaacttgcttgacatttccgaagtttcttgactaagttgctgctgtctgtgaatcatggtactctcatcaaaagctgtaaacaatttctacgctcttggaattacctgttttatatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="69005" stop="70137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69305" g_stop="69837" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E287891" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69305" e_stop="69837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATGGAGTGTTGTTGAGCTCATTCTGTTATCCTAGAGGGTGAATGTTTATTGGGGTATGATTCAGTAAGTTAATTGCTGGATTTTGTACAATTGTTGTTCCTCTGCTGGCCGGTTCTCTGTGCATGCTGACTTGGAAGTTGCTGTGCCATACTGCTATGGATCTGCTCCATGCTGAAATCAATTATTATGTTCTACTTTTGGACTTGTTTCCTTGATCACGCTCTTGGAATTTCCTGTTTTATATGCCGTCATATTTCTGGTGCAATCAAGTTTTATGTGGAAATTCTCAACTCTCTTTACCTGCACCATCTTCACTTGGAATACACAATGAGCAAACCCAATTGTCAGCTTCTTCGTTCTAGCAAGCCTGATAAGGAAGCATCTTGCAAGTGTGTTAGGATAACTATTGGAAACTTGCTTGACATTTCCGAAGTTTCTTGACTAAGTTGCTGCTGTCTGTGAATCATGGTACTCTCATCAAAAGCTGTAAACAATTTCTACGCTCTTGGAATTACCTGTTTTATATGCT</genome_strand>
        <mrna_strand>TTCAATGGAGTGTTGTTGAGCTCATTCTGTTATCCTAGAGGGTGAATGTTTATTGGGGTATGATTCAGTAAGTTAATTGCTGGATTTTGTACAATTGTTGTTCCTCTGCTGGCCGGTTCTCTGTGCATGCTGACTTGGAAGTTGCTGTGCCATACTGCTATGGATCTGCTCCATGCTGAAATCAATTATTATGTTCTACTTTTGGACTTGTTTCCTTGATCACGCTCTTGGAATTTCCTGTTTTATATGCCGTCATATTTCTGGTGCAATCAAGTTTTATGTGGAAATTCTCAACTCTCTTTACCTGCACCATCTTCACTTGGAATACACAATGAGCAAACCCAATTGTCAGCTTCTTCGTTCTAGCAAGCCTGATAAGGAAGCATCTTGCAAGTGTGTTAGGATAACTATTGGAAACTTGCTTGACATTTCCGAAGTTTCTTGACTAAGTTGCTGCTGTCTGTGAATCATGGTACTCTCATCAAAAGCTGTAAACAATTTCTACGCTCTTGGAATTACCTGTTTTATATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353103" ref_strand="+" ref_description="SGN-E353103 [cTOS-14-L10]">
      <seq>agagggtgaatgtttattggggtatgattcagtaagttaattgctggattttgtacaattgttgttcctctgctggccggttctctgtgcatgctgacttggaagttgctgtgccatactgctatggatctgctccatgctgaaatcaattattatgttctacttttggacttgtttccttgatcacgctcttggaatttcctgttttatatgccgtcatatttctggtgcaatcaagttttatgtggaaattctcaactctctttacctgcaccatcttcacttggaatacacaatgagcaaacccaattgtcagcttcttcgttctagcaagcctgataaggaagcatcttgcaagtgtgttaggataactattggaaacttgcttgacatttccgaagtttcttgactaagttgctgctgtctgtgaatcatggtactctcatcaaaagctgtaaacaatttctacgctcttggaattacctgttttatatgctgtctgtgttaccattttattgttgtcctcgatccatttgtgcaaggaatgtgcgcatttttgaagcgggctatatttgatggagtgtgattacaacttattattatgccttacttgagaagttgctgttatgtaggcagaaaagtggggatatttgccatcttttgctatgtatactgtgcaagtatacttctcttcactgcagggttaccactangaaatattgttatctgatatatttgattactggatcgtctgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="69041" stop="70397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69341" g_stop="70097" g_length="757"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="756" r_length="756" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E353103" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69341" e_stop="70097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGGTGAATGTTTATTGGGGTATGATTCAGTAAGTTAATTGCTGGATTTTGTACAATTGTTGTTCCTCTGCTGGCCGGTTCTCTGTGCATGCTGACTTGGAAGTTGCTGTGCCATACTGCTATGGATCTGCTCCATGCTGAAATCAATTATTATGTTCTACTTTTGGACTTGTTTCCTTGATCACGCTCTTGGAATTTCCTGTTTTATATGCCGTCATATTTCTGGTGCAATCAAGTTTTATGTGGAAATTCTCAACTCTCTTTACCTGCACCATCTTCACTTGGAATACACAATGAGCAAACCCAATTGTCAGCTTCTTCGTTCTAGCAAGCCTGATAAGGAAGCATCTTGCAAGTGTGTTAGGATAACTATTGGAAACTTGCTTGACATTTCCGAAGTTTCTTGACTAAGTTGCTGCTGTCTGTGAATCATGGTACTCTCATCAAAAGCTGTAAACAATTTCTACGCTCTTGGAATTACCTGTTTTATATGCTGTCTGTGTTACCATTTTATTGTTGTCCTCGATCCATTTGTGCAAGGAATGTGCGCATTTTTGAAGCGGGCTATATTTGATGGAGTGTGATTACAACTTATTATTATGCCTTACTTGAGAAGTTGCTGTTATGTAGGCAGAAAAGTGGGGATATTTGCCATCTTTTGCTATGTATACTGTGCAAGTATACTTCTCTTCACTGCAGGGTTAACCACTAGGAAATATTGTTATCTGATATATTTGATTACTGGATCGTCTGTT</genome_strand>
        <mrna_strand>AGAGGGTGAATGTTTATTGGGGTATGATTCAGTAAGTTAATTGCTGGATTTTGTACAATTGTTGTTCCTCTGCTGGCCGGTTCTCTGTGCATGCTGACTTGGAAGTTGCTGTGCCATACTGCTATGGATCTGCTCCATGCTGAAATCAATTATTATGTTCTACTTTTGGACTTGTTTCCTTGATCACGCTCTTGGAATTTCCTGTTTTATATGCCGTCATATTTCTGGTGCAATCAAGTTTTATGTGGAAATTCTCAACTCTCTTTACCTGCACCATCTTCACTTGGAATACACAATGAGCAAACCCAATTGTCAGCTTCTTCGTTCTAGCAAGCCTGATAAGGAAGCATCTTGCAAGTGTGTTAGGATAACTATTGGAAACTTGCTTGACATTTCCGAAGTTTCTTGACTAAGTTGCTGCTGTCTGTGAATCATGGTACTCTCATCAAAAGCTGTAAACAATTTCTACGCTCTTGGAATTACCTGTTTTATATGCTGTCTGTGTTACCATTTTATTGTTGTCCTCGATCCATTTGTGCAAGGAATGTGCGCATTTTTGAAGCGGGCTATATTTGATGGAGTGTGATTACAACTTATTATTATGCCTTACTTGAGAAGTTGCTGTTATGTAGGCAGAAAAGTGGGGATATTTGCCATCTTTTGCTATGTATACTGTGCAAGTATACTTCTCTTCACTGCAGGGTT-ACCACTANGAAATATTGTTATCTGATATATTTGATTACTGGATCGTCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338910" ref_strand="+" ref_description="SGN-E338910 [cTOE-21-L17]">
      <seq>tagggtgaatgtttattggggtatgattcagtaagttaattgctggattttgtacaattgttgttcctctgctggccggttctctgtgcatgctgacttggaagttgctgtgccatactgctatggatctgctccatgctgaaatcaattattatgttctacttttggacttgtttccttgatcacgctcttggaatttcctgttttatatgccgtcatatttctggtgcaatcaagttttatgtggaaattctcaactctctttacctgcaccatcttcacttggaatacacaatgagcaaacccaattgtcagcttcttcgttctagcaagcctgataaggaagcatcttgcaagtgtgttaggataactattggaaacttgcttgacatttccgaagtttcttgactgagttgctgctgtctgtgaatcatggtactctcatcaaaagctgtaaacaatttctacgctcttggaattacctgttttatatgctgnctgtgttaccattttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="69043" stop="70155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69342" g_stop="69854" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E338910" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69342" e_stop="69854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGTGAATGTTTATTGGGGTATGATTCAGTAAGTTAATTGCTGGATTTTGTACAATTGTTGTTCCTCTGCTGGCCGGTTCTCTGTGCATGCTGACTTGGAAGTTGCTGTGCCATACTGCTATGGATCTGCTCCATGCTGAAATCAATTATTATGTTCTACTTTTGGACTTGTTTCCTTGATCACGCTCTTGGAATTTCCTGTTTTATATGCCGTCATATTTCTGGTGCAATCAAGTTTTATGTGGAAATTCTCAACTCTCTTTACCTGCACCATCTTCACTTGGAATACACAATGAGCAAACCCAATTGTCAGCTTCTTCGTTCTAGCAAGCCTGATAAGGAAGCATCTTGCAAGTGTGTTAGGATAACTATTGGAAACTTGCTTGACATTTCCGAAGTTTCTTGACTAAGTTGCTGCTGTCTGTGAATCATGGTACTCTCATCAAAAGCTGTAAACAATTTCTACGCTCTTGGAATTACCTGTTTTATATGCTGTCTGTGTTACCATTTT</genome_strand>
        <mrna_strand>TAGGGTGAATGTTTATTGGGGTATGATTCAGTAAGTTAATTGCTGGATTTTGTACAATTGTTGTTCCTCTGCTGGCCGGTTCTCTGTGCATGCTGACTTGGAAGTTGCTGTGCCATACTGCTATGGATCTGCTCCATGCTGAAATCAATTATTATGTTCTACTTTTGGACTTGTTTCCTTGATCACGCTCTTGGAATTTCCTGTTTTATATGCCGTCATATTTCTGGTGCAATCAAGTTTTATGTGGAAATTCTCAACTCTCTTTACCTGCACCATCTTCACTTGGAATACACAATGAGCAAACCCAATTGTCAGCTTCTTCGTTCTAGCAAGCCTGATAAGGAAGCATCTTGCAAGTGTGTTAGGATAACTATTGGAAACTTGCTTGACATTTCCGAAGTTTCTTGACTGAGTTGCTGCTGTCTGTGAATCATGGTACTCTCATCAAAAGCTGTAAACAATTTCTACGCTCTTGGAATTACCTGTTTTATATGCTGNCTGTGTTACCATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292190" ref_strand="+" ref_description="SGN-E292190 [cLET-1-D17]">
      <seq>tttattggggtatgattcagtaagttaattgctggattttgtacaattgttgttcctctgctggccggttctctgtgcatgctgacttggaagttgctgtgccatactgctatggatctgctccatgctgaaatcaattattatgttctacttttggacttgtttccttgatcacgctcttggaatttcctgttttatatgccgtcatatttctggtgcaatcaagttttatgtggaaattctcaactctctttacctgcaccatcttcacttggaatacacaatgagcaaacccaattgtcagcttcttcgttctagcaagcctgataaggaagcatcttgcaagtgtgttaggataactattggaaacttgcttgacatttccgaagtttcttgactaagttgctgctgtctgtgaatcatggtactctcatcaaaagctgtaaacaatttctacgctcttggaattacctgttttatatgctgtctgtgttaccattttattgttgtcctcgatccatttgtgcaaggaatgtgcgcatttttgaagcgggctatatttgatggagtgtgattacaacttattattatgccttacttgagaagttgctgttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="69053" stop="70269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69353" g_stop="69969" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="617" r_length="617" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E292190" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69353" e_stop="69969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTGGGGTATGATTCAGTAAGTTAATTGCTGGATTTTGTACAATTGTTGTTCCTCTGCTGGCCGGTTCTCTGTGCATGCTGACTTGGAAGTTGCTGTGCCATACTGCTATGGATCTGCTCCATGCTGAAATCAATTATTATGTTCTACTTTTGGACTTGTTTCCTTGATCACGCTCTTGGAATTTCCTGTTTTATATGCCGTCATATTTCTGGTGCAATCAAGTTTTATGTGGAAATTCTCAACTCTCTTTACCTGCACCATCTTCACTTGGAATACACAATGAGCAAACCCAATTGTCAGCTTCTTCGTTCTAGCAAGCCTGATAAGGAAGCATCTTGCAAGTGTGTTAGGATAACTATTGGAAACTTGCTTGACATTTCCGAAGTTTCTTGACTAAGTTGCTGCTGTCTGTGAATCATGGTACTCTCATCAAAAGCTGTAAACAATTTCTACGCTCTTGGAATTACCTGTTTTATATGCTGTCTGTGTTACCATTTTATTGTTGTCCTCGATCCATTTGTGCAAGGAATGTGCGCATTTTTGAAGCGGGCTATATTTGATGGAGTGTGATTACAACTTATTATTATGCCTTACTTGAGAAGTTGCTGTTATG</genome_strand>
        <mrna_strand>TTTATTGGGGTATGATTCAGTAAGTTAATTGCTGGATTTTGTACAATTGTTGTTCCTCTGCTGGCCGGTTCTCTGTGCATGCTGACTTGGAAGTTGCTGTGCCATACTGCTATGGATCTGCTCCATGCTGAAATCAATTATTATGTTCTACTTTTGGACTTGTTTCCTTGATCACGCTCTTGGAATTTCCTGTTTTATATGCCGTCATATTTCTGGTGCAATCAAGTTTTATGTGGAAATTCTCAACTCTCTTTACCTGCACCATCTTCACTTGGAATACACAATGAGCAAACCCAATTGTCAGCTTCTTCGTTCTAGCAAGCCTGATAAGGAAGCATCTTGCAAGTGTGTTAGGATAACTATTGGAAACTTGCTTGACATTTCCGAAGTTTCTTGACTAAGTTGCTGCTGTCTGTGAATCATGGTACTCTCATCAAAAGCTGTAAACAATTTCTACGCTCTTGGAATTACCTGTTTTATATGCTGTCTGTGTTACCATTTTATTGTTGTCCTCGATCCATTTGTGCAAGGAATGTGCGCATTTTTGAAGCGGGCTATATTTGATGGAGTGTGATTACAACTTATTATTATGCCTTACTTGAGAAGTTGCTGTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373448" ref_strand="+" ref_description="SGN-E373448 [TUS-31-L2](-)">
      <seq>tattggggtatgattcagtaagttaattgttggattttgtacaattgttgttcctctgctggccggttctctgtgcatgctgacttggaagttgctgtgccatactgctatggatctgctccatgctgaaatcaattattatgttctacttttggacttgtttccttgatcacgctcttggaatttcctgttttatatgccgtcatatttctggtgcaatcaagttttatgtggaaattctcaactctctttacctgcaccatcttcacttggaatacacaatgagcaaacccaattgtcagcttcttcgttctagcaagcctgataaggaagcatcttgcaagtgtgttaggataactattggaaacttgcttgacatttccgaagtttcttgactaagttgctgctgtctgtgaatcatggtactctcatcaaaagctgtaaacaatttctacgctcttggaattacctgttttatatgctgtctgtgttaccattttattgttgtcctcgatccatttgtgcaaggaatgtgcgcatttttgaagcgggctatatttgatggagtgtgattacaacttattattatgccttacttgagaagttgctgttatgtaggcagaaaagtggggatatttgccatcttttgctatgtatactgtgcaagtatacttctcttcactgcagggttaaccactaggaaatattgttatctataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="69055" stop="70375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69355" g_stop="70070" g_length="716"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="718" polyA_stop="727"/>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E373448" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69355" e_stop="70070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGGGGTATGATTCAGTAAGTTAATTGCTGGATTTTGTACAATTGTTGTTCCTCTGCTGGCCGGTTCTCTGTGCATGCTGACTTGGAAGTTGCTGTGCCATACTGCTATGGATCTGCTCCATGCTGAAATCAATTATTATGTTCTACTTTTGGACTTGTTTCCTTGATCACGCTCTTGGAATTTCCTGTTTTATATGCCGTCATATTTCTGGTGCAATCAAGTTTTATGTGGAAATTCTCAACTCTCTTTACCTGCACCATCTTCACTTGGAATACACAATGAGCAAACCCAATTGTCAGCTTCTTCGTTCTAGCAAGCCTGATAAGGAAGCATCTTGCAAGTGTGTTAGGATAACTATTGGAAACTTGCTTGACATTTCCGAAGTTTCTTGACTAAGTTGCTGCTGTCTGTGAATCATGGTACTCTCATCAAAAGCTGTAAACAATTTCTACGCTCTTGGAATTACCTGTTTTATATGCTGTCTGTGTTACCATTTTATTGTTGTCCTCGATCCATTTGTGCAAGGAATGTGCGCATTTTTGAAGCGGGCTATATTTGATGGAGTGTGATTACAACTTATTATTATGCCTTACTTGAGAAGTTGCTGTTATGTAGGCAGAAAAGTGGGGATATTTGCCATCTTTTGCTATGTATACTGTGCAAGTATACTTCTCTTCACTGCAGGGTTAACCACTAGGAAATATTGTTATCTG</genome_strand>
        <mrna_strand>TATTGGGGTATGATTCAGTAAGTTAATTGTTGGATTTTGTACAATTGTTGTTCCTCTGCTGGCCGGTTCTCTGTGCATGCTGACTTGGAAGTTGCTGTGCCATACTGCTATGGATCTGCTCCATGCTGAAATCAATTATTATGTTCTACTTTTGGACTTGTTTCCTTGATCACGCTCTTGGAATTTCCTGTTTTATATGCCGTCATATTTCTGGTGCAATCAAGTTTTATGTGGAAATTCTCAACTCTCTTTACCTGCACCATCTTCACTTGGAATACACAATGAGCAAACCCAATTGTCAGCTTCTTCGTTCTAGCAAGCCTGATAAGGAAGCATCTTGCAAGTGTGTTAGGATAACTATTGGAAACTTGCTTGACATTTCCGAAGTTTCTTGACTAAGTTGCTGCTGTCTGTGAATCATGGTACTCTCATCAAAAGCTGTAAACAATTTCTACGCTCTTGGAATTACCTGTTTTATATGCTGTCTGTGTTACCATTTTATTGTTGTCCTCGATCCATTTGTGCAAGGAATGTGCGCATTTTTGAAGCGGGCTATATTTGATGGAGTGTGATTACAACTTATTATTATGCCTTACTTGAGAAGTTGCTGTTATGTAGGCAGAAAAGTGGGGATATTTGCCATCTTTTGCTATGTATACTGTGCAAGTATACTTCTCTTCACTGCAGGGTTAACCACTAGGAAATATTGTTATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309594" ref_strand="+" ref_description="SGN-E309594 [cLEY-26-G14]">
      <seq>attggggtatgattcagtaagttaattgctggattttgtacaattgttgttcctctgctggccggttctctgtgcatgctgacttggaagttgctgtgccatactgctatggatctgctccatgcctgaaatcaattattatgttctacttttggacttgtttccttgatcacgctcttggaatttcctgttttatatgccgtcatatttctggtgcaatcaagttttatgtggaaattctcaactctctttacctgcaccatcttcacttggaatacacaatgagcaaacccaattgtcagcttcttcgttctagcaagcctgataaggaagcatcttgcaagtgtgttaggataactattggaaacttgcttgacatttccgaagtttcttgactaagttgctgctgtctgtgaatcatggtactctcatcaaaagctgtaaacaatttctacgctcttggaattacctgttttatatgctgtctgtgttaccatttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="69056" stop="70155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69356" g_stop="69855" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E309594" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69356" e_stop="69855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGGGTATGATTCAGTAAGTTAATTGCTGGATTTTGTACAATTGTTGTTCCTCTGCTGGCCGGTTCTCTGTGCATGCTGACTTGGAAGTTGCTGTGCCATACTGCTATGGATCTGCTCCATG-CTGAAATCAATTATTATGTTCTACTTTTGGACTTGTTTCCTTGATCACGCTCTTGGAATTTCCTGTTTTATATGCCGTCATATTTCTGGTGCAATCAAGTTTTATGTGGAAATTCTCAACTCTCTTTACCTGCACCATCTTCACTTGGAATACACAATGAGCAAACCCAATTGTCAGCTTCTTCGTTCTAGCAAGCCTGATAAGGAAGCATCTTGCAAGTGTGTTAGGATAACTATTGGAAACTTGCTTGACATTTCCGAAGTTTCTTGACTAAGTTGCTGCTGTCTGTGAATCATGGTACTCTCATCAAAAGCTGTAAACAATTTCTACGCTCTTGGAATTACCTGTTTTATATGCTGTCTGTGTTACCATTTTA</genome_strand>
        <mrna_strand>ATTGGGGTATGATTCAGTAAGTTAATTGCTGGATTTTGTACAATTGTTGTTCCTCTGCTGGCCGGTTCTCTGTGCATGCTGACTTGGAAGTTGCTGTGCCATACTGCTATGGATCTGCTCCATGCCTGAAATCAATTATTATGTTCTACTTTTGGACTTGTTTCCTTGATCACGCTCTTGGAATTTCCTGTTTTATATGCCGTCATATTTCTGGTGCAATCAAGTTTTATGTGGAAATTCTCAACTCTCTTTACCTGCACCATCTTCACTTGGAATACACAATGAGCAAACCCAATTGTCAGCTTCTTCGTTCTAGCAAGCCTGATAAGGAAGCATCTTGCAAGTGTGTTAGGATAACTATTGGAAACTTGCTTGACATTTCCGAAGTTTCTTGACTAAGTTGCTGCTGTCTGTGAATCATGGTACTCTCATCAAAAGCTGTAAACAATTTCTACGCTCTTGGAATTACCTGTTTTATATGCTGTCTGTGTTACCATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E541795" ref_strand="+" ref_description="SGN-E541795 [TUS-62-M10](-)">
      <seq>tggggtatgattcagtaagttaattgctggattttgtacaattgttgttcctctgctggccggttctctgtgcatgctgacttggaagttgctgtgccatactgctatggatctgctccatgctgaaatcaattattatgttctacttttggacttgtttccttgatcacgctcttggaatttcctgttttatatgccgtcatatttctggtgcaatcaagttttatgtggaaattctcaactctctttacctgcaccatcttcacttggaatacacaatgagcaaacccaattgtcagcttcttcgttctagcaagcctgataaggaagcatcttgcaagtgtgttaggataactattggaaacttgcttgacatttccgaagtttcttgactaagttgctgctgtctgtgaatcatggtactctcatcaaaagctgtaaacaatttctacgctcttggaattacctgttttatatgctgtctgtgttaccattttattgttgtcctcgatccatttgtgcaaggaatgtgcgcatttttgaagcgggctatatttgatggagtgtgattacaacttattattatgccttacttgagaagttgctgttatgtaggcagaaaagtggggatatttgccatcttttgctatgtatactgtgcaagtatacttctcttcactgcagggttaaccactagganaatattgttatctgatatatttgattaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="69058" stop="70383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69358" g_stop="70083" g_length="726"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="727" r_length="727" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="728" polyA_stop="747"/>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E541795" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69358" e_stop="70083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGGTATGATTCAGTAAGTTAATTGCTGGATTTTGTACAATTGTTGTTCCTCTGCTGGCCGGTTCTCTGTGCATGCTGACTTGGAAGTTGCTGTGCCATACTGCTATGGATCTGCTCCATGCTGAAATCAATTATTATGTTCTACTTTTGGACTTGTTTCCTTGATCACGCTCTTGGAATTTCCTGTTTTATATGCCGTCATATTTCTGGTGCAATCAAGTTTTATGTGGAAATTCTCAACTCTCTTTACCTGCACCATCTTCACTTGGAATACACAATGAGCAAACCCAATTGTCAGCTTCTTCGTTCTAGCAAGCCTGATAAGGAAGCATCTTGCAAGTGTGTTAGGATAACTATTGGAAACTTGCTTGACATTTCCGAAGTTTCTTGACTAAGTTGCTGCTGTCTGTGAATCATGGTACTCTCATCAAAAGCTGTAAACAATTTCTACGCTCTTGGAATTACCTGTTTTATATGCTGTCTGTGTTACCATTTTATTGTTGTCCTCGATCCATTTGTGCAAGGAATGTGCGCATTTTTGAAGCGGGCTATATTTGATGGAGTGTGATTACAACTTATTATTATGCCTTACTTGAGAAGTTGCTGTTATGTAGGCAGAAAAGTGGGGATATTTGCCATCTTTTGCTATGTATACTGTGCAAGTATACTTCTCTTCACTGCAGGGTTAACCACTAGGA-AATATTGTTATCTGATATATTTGATTA</genome_strand>
        <mrna_strand>TGGGGTATGATTCAGTAAGTTAATTGCTGGATTTTGTACAATTGTTGTTCCTCTGCTGGCCGGTTCTCTGTGCATGCTGACTTGGAAGTTGCTGTGCCATACTGCTATGGATCTGCTCCATGCTGAAATCAATTATTATGTTCTACTTTTGGACTTGTTTCCTTGATCACGCTCTTGGAATTTCCTGTTTTATATGCCGTCATATTTCTGGTGCAATCAAGTTTTATGTGGAAATTCTCAACTCTCTTTACCTGCACCATCTTCACTTGGAATACACAATGAGCAAACCCAATTGTCAGCTTCTTCGTTCTAGCAAGCCTGATAAGGAAGCATCTTGCAAGTGTGTTAGGATAACTATTGGAAACTTGCTTGACATTTCCGAAGTTTCTTGACTAAGTTGCTGCTGTCTGTGAATCATGGTACTCTCATCAAAAGCTGTAAACAATTTCTACGCTCTTGGAATTACCTGTTTTATATGCTGTCTGTGTTACCATTTTATTGTTGTCCTCGATCCATTTGTGCAAGGAATGTGCGCATTTTTGAAGCGGGCTATATTTGATGGAGTGTGATTACAACTTATTATTATGCCTTACTTGAGAAGTTGCTGTTATGTAGGCAGAAAAGTGGGGATATTTGCCATCTTTTGCTATGTATACTGTGCAAGTATACTTCTCTTCACTGCAGGGTTAACCACTAGGANAATATTGTTATCTGATATATTTGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548721" ref_strand="+" ref_description="SGN-E548721 [TUS-63-N2](-)">
      <seq>gtatgattcagtaagttaattgctggattttgtacaattgttgttcctctgctggccggttctctgtgcatgctgacttggaagttgctgtgccatactgctatggatctgctccatgctgaaatcaattattatgttctacttttggacttgtttccttgatcacgctcttggaatttcctgttttatatgccgtcatatttctggtgcaatcaagttttatgtggaaattctcaactctctttacctgcaccatcttcacttggaatacacaatgagcaaacccaattgtcagcttcttcgttctagcaagcctgataaggaagcatcttgcaagtgtgttaggataactattggaaacttgcttgacatttccgaagtttcttgactaagttgctgctgtctgtgaatcatggtactctcatcaaaagctgtaaacaatttctacgctcttggaattacctgttttatatgctgtctgtgttaccattttattgttgtcctcgatccatttgtgcaaggaatgtgcgcatttttgaagcgggctatatttgatggagtgtgattacaacttattattatgccttacttgagaagttgctgttatgtaggcagaaaagtggggatatttgccatcttttgctatgtatactgtgcaagtatacttctcttcactgcagggttaaccactaggaaatattgttatctgatatatttgattactggatcgtctgttgaggtaatctgttcttaaatgttaggtcgttatgcttgttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="69062" stop="70439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69362" g_stop="70138" g_length="777"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="777" r_length="777" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E548721" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69362" e_stop="70138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATGATTCAGTAAGTTAATTGCTGGATTTTGTACAATTGTTGTTCCTCTGCTGGCCGGTTCTCTGTGCATGCTGACTTGGAAGTTGCTGTGCCATACTGCTATGGATCTGCTCCATGCTGAAATCAATTATTATGTTCTACTTTTGGACTTGTTTCCTTGATCACGCTCTTGGAATTTCCTGTTTTATATGCCGTCATATTTCTGGTGCAATCAAGTTTTATGTGGAAATTCTCAACTCTCTTTACCTGCACCATCTTCACTTGGAATACACAATGAGCAAACCCAATTGTCAGCTTCTTCGTTCTAGCAAGCCTGATAAGGAAGCATCTTGCAAGTGTGTTAGGATAACTATTGGAAACTTGCTTGACATTTCCGAAGTTTCTTGACTAAGTTGCTGCTGTCTGTGAATCATGGTACTCTCATCAAAAGCTGTAAACAATTTCTACGCTCTTGGAATTACCTGTTTTATATGCTGTCTGTGTTACCATTTTATTGTTGTCCTCGATCCATTTGTGCAAGGAATGTGCGCATTTTTGAAGCGGGCTATATTTGATGGAGTGTGATTACAACTTATTATTATGCCTTACTTGAGAAGTTGCTGTTATGTAGGCAGAAAAGTGGGGATATTTGCCATCTTTTGCTATGTATACTGTGCAAGTATACTTCTCTTCACTGCAGGGTTAACCACTAGGAAATATTGTTATCTGATATATTTGATTACTGGATCGTCTGTTGAGGTAATCTGTTCTTAAATGTTAGGTTGTTATGCTTGTTA</genome_strand>
        <mrna_strand>GTATGATTCAGTAAGTTAATTGCTGGATTTTGTACAATTGTTGTTCCTCTGCTGGCCGGTTCTCTGTGCATGCTGACTTGGAAGTTGCTGTGCCATACTGCTATGGATCTGCTCCATGCTGAAATCAATTATTATGTTCTACTTTTGGACTTGTTTCCTTGATCACGCTCTTGGAATTTCCTGTTTTATATGCCGTCATATTTCTGGTGCAATCAAGTTTTATGTGGAAATTCTCAACTCTCTTTACCTGCACCATCTTCACTTGGAATACACAATGAGCAAACCCAATTGTCAGCTTCTTCGTTCTAGCAAGCCTGATAAGGAAGCATCTTGCAAGTGTGTTAGGATAACTATTGGAAACTTGCTTGACATTTCCGAAGTTTCTTGACTAAGTTGCTGCTGTCTGTGAATCATGGTACTCTCATCAAAAGCTGTAAACAATTTCTACGCTCTTGGAATTACCTGTTTTATATGCTGTCTGTGTTACCATTTTATTGTTGTCCTCGATCCATTTGTGCAAGGAATGTGCGCATTTTTGAAGCGGGCTATATTTGATGGAGTGTGATTACAACTTATTATTATGCCTTACTTGAGAAGTTGCTGTTATGTAGGCAGAAAAGTGGGGATATTTGCCATCTTTTGCTATGTATACTGTGCAAGTATACTTCTCTTCACTGCAGGGTTAACCACTAGGAAATATTGTTATCTGATATATTTGATTACTGGATCGTCTGTTGAGGTAATCTGTTCTTAAATGTTAGGTCGTTATGCTTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299827" ref_strand="+" ref_description="SGN-E299827 [cLEW-1-M7](-)">
      <seq>atgctgaaatcaattattatgttctacttttggacttgtttccttgatcacgctcttggaatttcctgttttatatgccgtcatatttctggtgcaatcaagttttatgtggaaattctcaactctctttacctgcaccatcttcacttggaatacacaatgagcaaacccaattgtcagcttcttcgttctagcaagcctgataaggaagcatcttgcaagtgtgttagaataactattggaaacttgcttgacatttccgaagtttcttgactaagttgctgctgtctgtgaatcatggtactctcatcaaaagctgtaaacaatttctacgctcttggaattacctgttttatatgctgtctgtgttaccattttattgttgtcctcgatccatttgtgcaaggaatgtgcgcatttttgaagcgggctatatttgatggagtgtgattacaacttattattatgccttacttgagaagttgctgttatgtaggcagaaaagtggggatatttgccatcttttgctatgtatactgtgcaagtatacttctcttcactgcagggttaaccactaggaaatattgttatctgatatatttgattaaaaaaaaaaaaaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="69177" stop="70383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69477" g_stop="70083" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="608" polyA_stop="626"/>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E299827" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69477" e_stop="70083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTGAAATCAATTATTATGTTCTACTTTTGGACTTGTTTCCTTGATCACGCTCTTGGAATTTCCTGTTTTATATGCCGTCATATTTCTGGTGCAATCAAGTTTTATGTGGAAATTCTCAACTCTCTTTACCTGCACCATCTTCACTTGGAATACACAATGAGCAAACCCAATTGTCAGCTTCTTCGTTCTAGCAAGCCTGATAAGGAAGCATCTTGCAAGTGTGTTAGGATAACTATTGGAAACTTGCTTGACATTTCCGAAGTTTCTTGACTAAGTTGCTGCTGTCTGTGAATCATGGTACTCTCATCAAAAGCTGTAAACAATTTCTACGCTCTTGGAATTACCTGTTTTATATGCTGTCTGTGTTACCATTTTATTGTTGTCCTCGATCCATTTGTGCAAGGAATGTGCGCATTTTTGAAGCGGGCTATATTTGATGGAGTGTGATTACAACTTATTATTATGCCTTACTTGAGAAGTTGCTGTTATGTAGGCAGAAAAGTGGGGATATTTGCCATCTTTTGCTATGTATACTGTGCAAGTATACTTCTCTTCACTGCAGGGTTAACCACTAGGAAATATTGTTATCTGATATATTTGATTA</genome_strand>
        <mrna_strand>ATGCTGAAATCAATTATTATGTTCTACTTTTGGACTTGTTTCCTTGATCACGCTCTTGGAATTTCCTGTTTTATATGCCGTCATATTTCTGGTGCAATCAAGTTTTATGTGGAAATTCTCAACTCTCTTTACCTGCACCATCTTCACTTGGAATACACAATGAGCAAACCCAATTGTCAGCTTCTTCGTTCTAGCAAGCCTGATAAGGAAGCATCTTGCAAGTGTGTTAGAATAACTATTGGAAACTTGCTTGACATTTCCGAAGTTTCTTGACTAAGTTGCTGCTGTCTGTGAATCATGGTACTCTCATCAAAAGCTGTAAACAATTTCTACGCTCTTGGAATTACCTGTTTTATATGCTGTCTGTGTTACCATTTTATTGTTGTCCTCGATCCATTTGTGCAAGGAATGTGCGCATTTTTGAAGCGGGCTATATTTGATGGAGTGTGATTACAACTTATTATTATGCCTTACTTGAGAAGTTGCTGTTATGTAGGCAGAAAAGTGGGGATATTTGCCATCTTTTGCTATGTATACTGTGCAAGTATACTTCTCTTCACTGCAGGGTTAACCACTAGGAAATATTGTTATCTGATATATTTGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349263" ref_strand="+" ref_description="SGN-E349263 [cTOS-2-P5]">
      <seq>tgctgaaatcattattatgttctacttttggacttgtttccttgatcacgctcttggaatttcctgttttatatgccgtcatatttctggtgcaatcaagttttatgtggaaattctcaactctctttacctgcaccatcttcacttggaatacacaatgagcaaacccaattgtcagcttcttcgttctagcaagcctgataaggaagcatcttgcaagtgtgttaggataactattggaaacttgcttgacatttccgaagtttcttgactaagttgctgctgtctgtgaatcatggtactctcatcaaaagctgtaaacaatttctacgctcttggaattacctgttttatatgctgtctgtgttaccattttattgttgtcctcgatccatttgtgcaaggaatgtgcgcatttttgaagcgggctatatttgatggagtgtgattacaacttattattatgccttacttgagaagttgctgntatgtangcagaaaagtggggatatttgccatcttttgctatgtatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="69178" stop="70314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69478" g_stop="70014" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="536" r_length="536" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E349263" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69478" e_stop="70014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGAAATCAATTATTATGTTCTACTTTTGGACTTGTTTCCTTGATCACGCTCTTGGAATTTCCTGTTTTATATGCCGTCATATTTCTGGTGCAATCAAGTTTTATGTGGAAATTCTCAACTCTCTTTACCTGCACCATCTTCACTTGGAATACACAATGAGCAAACCCAATTGTCAGCTTCTTCGTTCTAGCAAGCCTGATAAGGAAGCATCTTGCAAGTGTGTTAGGATAACTATTGGAAACTTGCTTGACATTTCCGAAGTTTCTTGACTAAGTTGCTGCTGTCTGTGAATCATGGTACTCTCATCAAAAGCTGTAAACAATTTCTACGCTCTTGGAATTACCTGTTTTATATGCTGTCTGTGTTACCATTTTATTGTTGTCCTCGATCCATTTGTGCAAGGAATGTGCGCATTTTTGAAGCGGGCTATATTTGATGGAGTGTGATTACAACTTATTATTATGCCTTACTTGAGAAGTTGCTGTTATGTAGGCAGAAAAGTGGGGATATTTGCCATCTTTTGCTATGTATACT</genome_strand>
        <mrna_strand>TGCTGAAATC-ATTATTATGTTCTACTTTTGGACTTGTTTCCTTGATCACGCTCTTGGAATTTCCTGTTTTATATGCCGTCATATTTCTGGTGCAATCAAGTTTTATGTGGAAATTCTCAACTCTCTTTACCTGCACCATCTTCACTTGGAATACACAATGAGCAAACCCAATTGTCAGCTTCTTCGTTCTAGCAAGCCTGATAAGGAAGCATCTTGCAAGTGTGTTAGGATAACTATTGGAAACTTGCTTGACATTTCCGAAGTTTCTTGACTAAGTTGCTGCTGTCTGTGAATCATGGTACTCTCATCAAAAGCTGTAAACAATTTCTACGCTCTTGGAATTACCTGTTTTATATGCTGTCTGTGTTACCATTTTATTGTTGTCCTCGATCCATTTGTGCAAGGAATGTGCGCATTTTTGAAGCGGGCTATATTTGATGGAGTGTGATTACAACTTATTATTATGCCTTACTTGAGAAGTTGCTGNTATGTANGCAGAAAAGTGGGGATATTTGCCATCTTTTGCTATGTATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299679" ref_strand="+" ref_description="SGN-E299679 [cLEW-1-M19](-)">
      <seq>aatgagcaaacccaattgtcagcttcttcgttctagcaagcctgataaggaagcatcttgcaagtgtgttaggataactattggaaacttgcttgacatttccgaagtttcttgactaagttgctgctgtctgtgaatcatggtactctcatcaaaagctgtaaacaatttctacgctcttggaattacctgttttatatgctgtctgtgttaccattttattgttgtcctcgatccatttgtgcaaggaatgtgcgcatttttgaagcgggctatatttgatggagtgtgattacaacttattattatgccttacttgagaagttgctgttatgtaggcagaaaagtggggatatttgccatcttttgctatgtatactgtgcaagtatacttctcttcactgcagggttaaccactaggaaatattgttatctgatatatttgattaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="69335" stop="70383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69635" g_stop="70083" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="450" polyA_stop="468"/>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E299679" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69635" e_stop="70083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGAGCAAACCCAATTGTCAGCTTCTTCGTTCTAGCAAGCCTGATAAGGAAGCATCTTGCAAGTGTGTTAGGATAACTATTGGAAACTTGCTTGACATTTCCGAAGTTTCTTGACTAAGTTGCTGCTGTCTGTGAATCATGGTACTCTCATCAAAAGCTGTAAACAATTTCTACGCTCTTGGAATTACCTGTTTTATATGCTGTCTGTGTTACCATTTTATTGTTGTCCTCGATCCATTTGTGCAAGGAATGTGCGCATTTTTGAAGCGGGCTATATTTGATGGAGTGTGATTACAACTTATTATTATGCCTTACTTGAGAAGTTGCTGTTATGTAGGCAGAAAAGTGGGGATATTTGCCATCTTTTGCTATGTATACTGTGCAAGTATACTTCTCTTCACTGCAGGGTTAACCACTAGGAAATATTGTTATCTGATATATTTGATTA</genome_strand>
        <mrna_strand>AATGAGCAAACCCAATTGTCAGCTTCTTCGTTCTAGCAAGCCTGATAAGGAAGCATCTTGCAAGTGTGTTAGGATAACTATTGGAAACTTGCTTGACATTTCCGAAGTTTCTTGACTAAGTTGCTGCTGTCTGTGAATCATGGTACTCTCATCAAAAGCTGTAAACAATTTCTACGCTCTTGGAATTACCTGTTTTATATGCTGTCTGTGTTACCATTTTATTGTTGTCCTCGATCCATTTGTGCAAGGAATGTGCGCATTTTTGAAGCGGGCTATATTTGATGGAGTGTGATTACAACTTATTATTATGCCTTACTTGAGAAGTTGCTGTTATGTAGGCAGAAAAGTGGGGATATTTGCCATCTTTTGCTATGTATACTGTGCAAGTATACTTCTCTTCACTGCAGGGTTAACCACTAGGAAATATTGTTATCTGATATATTTGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299872" ref_strand="-" ref_description="SGN-E299872 [cLEW-1-K22]">
      <seq>ccaattgtcagcttcttcgttctagcaagcctgataagcaagcatcttgcaagtgtgttaggataactattggaaacttgcttgacatttccgaagtttcttgactaagttgctgctgtctgtgaatcatggtactctcatcaaaagctgtaaacaatttctacgctcttggaattacctgttttatatgctgtctgtgttaccattttattgttgtcctcgatccatttgtgcaaggaatgtgcgcatttttgaagcgggctatatttgatggagtgtgattacaacttattattatgccttacttgagaagttgctgttatgtaggcagaaaagtggggatatttgccatcttttgctatgtatcctgtgcaagtatacttctcttcactgcagggttaaccactaggaaatattgttatctgatatatttgattactggatcgtctgttaaggtaatctgttcttaaaaaaaaaaaaaaaaaactcgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="69346" stop="70416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69646" g_stop="70115" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="471" polyA_stop="487"/>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E299872" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299872" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="69646" e_stop="70115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTGTCAGCTTCTTCGTTCTAGCAAGCCTGATAAGGAAGCATCTTGCAAGTGTGTTAGGATAACTATTGGAAACTTGCTTGACATTTCCGAAGTTTCTTGACTAAGTTGCTGCTGTCTGTGAATCATGGTACTCTCATCAAAAGCTGTAAACAATTTCTACGCTCTTGGAATTACCTGTTTTATATGCTGTCTGTGTTACCATTTTATTGTTGTCCTCGATCCATTTGTGCAAGGAATGTGCGCATTTTTGAAGCGGGCTATATTTGATGGAGTGTGATTACAACTTATTATTATGCCTTACTTGAGAAGTTGCTGTTATGTAGGCAGAAAAGTGGGGATATTTGCCATCTTTTGCTATGTATACTGTGCAAGTATACTTCTCTTCACTGCAGGGTTAACCACTAGGAAATATTGTTATCTGATATATTTGATTACTGGATCGTCTGTTGAGGTAATCTGTTCTTAA</genome_strand>
        <mrna_strand>CCAATTGTCAGCTTCTTCGTTCTAGCAAGCCTGATAAGCAAGCATCTTGCAAGTGTGTTAGGATAACTATTGGAAACTTGCTTGACATTTCCGAAGTTTCTTGACTAAGTTGCTGCTGTCTGTGAATCATGGTACTCTCATCAAAAGCTGTAAACAATTTCTACGCTCTTGGAATTACCTGTTTTATATGCTGTCTGTGTTACCATTTTATTGTTGTCCTCGATCCATTTGTGCAAGGAATGTGCGCATTTTTGAAGCGGGCTATATTTGATGGAGTGTGATTACAACTTATTATTATGCCTTACTTGAGAAGTTGCTGTTATGTAGGCAGAAAAGTGGGGATATTTGCCATCTTTTGCTATGTATCCTGTGCAAGTATACTTCTCTTCACTGCAGGGTTAACCACTAGGAAATATTGTTATCTGATATATTTGATTACTGGATCGTCTGTTAAGGTAATCTGTTCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706092" ref_strand="+" ref_description="SGN-E706092 [FA28DH12]">
      <seq>ctcaaatttctaacctaagttgcagtagcatttatcatgtttcgtcgcaagagccatccccatagtgaacaggagggtgaggatcaaccacataaggttaaggaacttaggacttccttgggcgcgccactatcaggacgtgatttacagtactgcagtgatgcatgtttaaggagatatttggaagcgcggaactggaatgttgagaaatcaaagaagatgttggaagaaaccttaaaatggaggttaacttttaagcctgaagagatccgctggcatgaagttgcaattgaaggtgagaccgggaaggcttacagagcaaattttcatgaccgtgatgggaggactgttcttatcttgagaccgggaatgcagaacacgacagcactagacaaccagatgaggcatttagtgtatctgatagaaaatgcaattcttaatcttccacaagaccaagagcaaatgtcatggttgatagacttcacaggatggtctttaactaacaatgttcctatcaaatctgctcgtgagacggtcaatattttgcagaatcactaccctgaaagacttgctgtagcatttctgtacaaccctccgcggatttttgaagcattttggaagatagtcaagtattttctggatcccaaaacaatgcagaaggtcaaatttgtttatccaaagaacaaggacagtgttgagttgatgaagtcatattttgacatggataatttaccaaatgaattaggaggaaaagcaaatttgaaatatgatcatgaagagttctcaaggcaaatgactcaagatgatgtgaaagctgcaaagttttggagttttgacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="84585" stop="89013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84885" g_stop="84903" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84904" i_stop="86214" i_length="1311">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86215" g_stop="86291" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="96" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86292" i_stop="86627" i_length="336">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86628" g_stop="86807" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="276" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86808" i_stop="87510" i_length="703">
            <donor d_prob="0.464" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87511" g_stop="87609" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="375" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87610" i_stop="87709" i_length="100">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87710" g_stop="87955" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="621" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="87956" i_stop="88494" i_length="539">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="88495" g_stop="88713" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="840" r_length="219" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E706092" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84885" e_stop="84903"/>
          <exon e_start="86215" e_stop="86291"/>
          <exon e_start="86628" e_stop="86807"/>
          <exon e_start="87511" e_stop="87609"/>
          <exon e_start="87710" e_stop="87955"/>
          <exon e_start="88495" e_stop="88713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAATTTCTAACCTAAGGTAAGATCATGAATTAATTAATGCTAATTATCTTCTATTCAAAACTTCTTTTATATATAGATAGATATATATTGTGATTGTTGTAGTTGATTCTGTATTTACTGACTTAAAATCTCGAATTAATTATTGTAATTTATGTATATAACATGTTATTGATCTTGATTTGGATATACAATAACTATGATAATAATCTGGACGGATTACTGTTTGTTAGTGTATTTGCTTTGTATCTTGTTTATTTTGTTGCCTTTTTTTTTTCCCTCGACGTCCTGTTTCACTAACTTTCTTTTTGAGTCGAGGGTGTATTAGAAATAACCTTTTTTACCCTAGAAAGATATGGATAAAATCTGACGCATTCTACCCTCCGTAGACCCCGGGTTTACCCTAATAGGTATGTTGTTGTTGTAATCTGGAGCCTGTTAGTTTTGTTGTGACAAAGTTTGGATCTTTTTGATCAGCAAAAAAGGTAGTCTCTTTCAAAAATTTACCACTCTGTTGTAGGTGGATCATGGTGTGAAACACACAAAAAAACCTTTGTTGTTGCATCGAGTTCATCTGAGTTCAGTACTTTCTATGGATCGTTTAAATTTATGTGAAAATTTCAACAAGTAGTATATCTGAATTCATAGTTTTGAAAATTAGGGTCTTAGGGCTAAGAATGTTAAAGATTGAATCTATAGATTTTAAATCCTTAATCCGCTTGTGTTTGTAAAGAGGGAAGCTAGCCATTATTGTTGCAACAATTTGTTAATCGAAAGTAGTTTCAAATTCCTGCGATTTTCTGTCTAGAAAAACGCGGACTTGTAGTACTCTCTTTGATTAATCTAGTCTTTTCTTCGCTTAGGTAGTGAATCAATCATCTACTAAAGATGCAAGCGTTGCACGCCTTATTTGAGACTCGTAAGACAGGAGAGAAGTGTCAAAAGTTGATATCATAGGTTTGAATCATACAGTAATGTGATTCGTTTTCCTTTTTGTGCCAAACAGAATGAAATAGATTCACTCCGTGATGAATACGCTTGAAAAATGAAATGCAATTCTTTTGACCCTACTTATGTCATGGTAATTGAAATCATCTTTTGTATGGAATTTTTGTTTTCAAAATGTATTTGAAGATCGATAGGAAATCTCGCGACTGTCAAGTAGAAGTAAGTTCTAATTCCTCTGTGTTTCTATATAAATCTGTTCCTTTTTGAACATTTGTATTGGAGTTTTAGATATGAAAATGTCTTTGTTGATACATGGGAACTTCGATCTTATATTAGTCGATTGTTGAAAGGCCTCACTTTTGTTATACTGGTTTTGCTTCAGTTGCAGTAGCATTTATCATGTTTCGTCGCAAGAGCCATCCCCATAGTGAACAGGAGGGTGAGGATCAACCACATAAGGTGATTAATCGTTGAAAAGTTTATATTGTTGTGTGGAGTTTTCTGTTTCCGAGTGTGTTTGAAGATTTATACGAGTATACAACTTAAGCTTTTAGATGAGATGATCATACACGTGAAAGTAGCTTCAGTAAATTCGCTCTTTCAGAGCTCAAATAGGTCATATTAGGTTCTGTGAGTCTATAAATGCTTGAATATAATCGTTGACATTATAAAGATGCATAACTCTTGATACTTCTGAGGGACTGTGGACGTATTCACGATTAAATCGTGTGTTTTGAACTTGTTCTAATCAGATCATATCTATGAAGTGAGAGGCTCATGTTACTACTATTACAGGTTAAGGAACTTAGGACTTCCTTGGGCGCGCCACTATCAGGACGTGATTTACAGTACTGCAGTGATGCATGTTTAAGGAGATATTTGGAAGCGCGGAACTGGAATGTTGAGAAATCAAAGAAGATGTTGGAAGAAACCTTAAAATGGAGGTTAACTTTTAAGCCTGAAGAGATCCGCTGGGTAAGAAAAGAGACGGTTTTGTATGGTGTGGTTATCTTCTTGTTGAATGTAACATGTTACTAAATCATTCCAGTATGTTTACTTTAGGTCGATATTTGCTAGGAGTGTTTATGCTTGTCACAAACTTATATGCTAACAGACTCGTATATTTCATCGAAAAAAGTACAGGAAAAGAATCATATTGAAAATGCTCCCAACCCACACCTTCCTTTCGTAGAGTCGATGTATTGTAAGTGATCCCAACCTGCCCGGAGTGAGCTTCCCGTAAAGGCAAGTGAAGTTGGTGAGCGATATGATGGATAACTATCTCCTGTTGTTTCGGAGAGGACTCAGCTGTTAGTTAGTACCCCAAGAGATGAACTAACTATAGATTTGTATATGAGTGCACGATATGAAATTTGGGCGGATAGCTAAAAGAAAGTTGATAGAGAAACTATTTTTTTGTATACAATTAGAATAAGACGGGCTTACATAGAGCGATATGGACATGGACAGTGAGTATTCATTCATACAATTATGAATTGGAAAAAAGTACTGCATGACAAACTGTTTGTAGTTATTCTGCAGACATGAAAGATAACATATTTGTGATTGTCGCCTTTATTTATATTTACCAACGATTCATTTTTTCATAATTCATCGTGTTGGTACTAGACGGTTTTCTGATATGTATCTGCTGAACATATAATTTGCACTTTTACAGCATGAAGTTGCAATTGAAGGTGAGACCGGGAAGGCTTACAGAGCAAATTTTCATGACCGTGATGGGAGGACTGTTCTTATCTTGAGACCGGGAATGCAGGTGACATAAGATACCTACTCTAAAGTCTTCAAAATCTGTGTAACGATAACTGCTGAAAAATTCTTGAATTGGTTTCATAGTTTTCGCTTACATTCTGCAGAACACGACAGCACTAGACAACCAGATGAGGCATTTAGTGTATCTGATAGAAAATGCAATTCTTAATCTTCCACAAGACCAAGAGCAAATGTCATGGTTGATAGACTTCACAGGATGGTCTTTAACTAACAATGTTCCTATCAAATCTGCTCGTGAGACGGTCAATATTTTGCAGAATCACTACCCTGAAAGACTTGCTGTAGCATTTCTGTACAACCCTCCGCGGATTTTTGAAGCATTTTGGAAGGTTTGATCTGAATCTTTATCTTTTTCTTTCACCTCTTACCTGTTACTTGATCTAACAAAAACCAAGCAAAACTCGTGATCAGTTATCTTAGTGTGTTAAGGTGTGGGGAGGATACAATCAACATGGAACGCCTTTTATGAAACTTGTTTTCTTTATTGACACCAAAGAAGTCATTTTTCTCATTTTTAAAGAACTTGTGTTCTTATATTTTTTTCAAAAATGTGTTCCTCCATACCAAACACAGTTGATCTCTTTTTTCGGTCATTGCCTTGTTGGTTTACACGTTCATATCGAACCATGTGCTATTATTATCTGGTTCTATTATGTATTTTATTCAAGCATCAACCAACCATAGTTACTTCAGGGAACGCAGCCTGGTGCACAAAGCATCCTGCATTCACGCTGCACGTCGAAGTGTGTGATTGCATCATGTAGGCAACTGATTCCACTGGTCACAATGAGACAACTTTACCATTGCTCCGAGGCACTCCCTTTGTCTTACCTTATATTAATGCTGATTTTCCCCTTTCTTGTTCCAGATAGTCAAGTATTTTCTGGATCCCAAAACAATGCAGAAGGTCAAATTTGTTTATCCAAAGAACAAGGACAGTGTTGAGTTGATGAAGTCATATTTTGACATGGATAATTTACCAAATGAATTAGGAGGAAAAGCAAATTTGAAATATGATCATGAAGAGTTCTCAAGGCAAATGACTCAAGATGATGTGAAAGCTGCAAAGTTTTGGAGTTTTGACATA</genome_strand>
        <mrna_strand>CTCAAATTTCTAACCTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGTAGCATTTATCATGTTTCGTCGCAAGAGCCATCCCCATAGTGAACAGGAGGGTGAGGATCAACCACATAAG................................................................................................................................................................................................................................................................................................................................................GTTAAGGAACTTAGGACTTCCTTGGGCGCGCCACTATCAGGACGTGATTTACAGTACTGCAGTGATGCATGTTTAAGGAGATATTTGGAAGCGCGGAACTGGAATGTTGAGAAATCAAAGAAGATGTTGGAAGAAACCTTAAAATGGAGGTTAACTTTTAAGCCTGAAGAGATCCGCTGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAAGTTGCAATTGAAGGTGAGACCGGGAAGGCTTACAGAGCAAATTTTCATGACCGTGATGGGAGGACTGTTCTTATCTTGAGACCGGGAATGCAG....................................................................................................AACACGACAGCACTAGACAACCAGATGAGGCATTTAGTGTATCTGATAGAAAATGCAATTCTTAATCTTCCACAAGACCAAGAGCAAATGTCATGGTTGATAGACTTCACAGGATGGTCTTTAACTAACAATGTTCCTATCAAATCTGCTCGTGAGACGGTCAATATTTTGCAGAATCACTACCCTGAAAGACTTGCTGTAGCATTTCTGTACAACCCTCCGCGGATTTTTGAAGCATTTTGGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTCAAGTATTTTCTGGATCCCAAAACAATGCAGAAGGTCAAATTTGTTTATCCAAAGAACAAGGACAGTGTTGAGTTGATGAAGTCATATTTTGACATGGATAATTTACCAAATGAATTAGGAGGAAAAGCAAATTTGAAATATGATCATGAAGAGTTCTCAAGGCAAATGACTCAAGATGATGTGAAAGCTGCAAAGTTTTGGAGTTTTGACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699693" ref_strand="+" ref_description="SGN-E699693 [FA10DG03]">
      <seq>aatctaagttgcagtagcatttatcatgtttcgtcgcaagagccatccccatagtgaacaggagggtgaggatcaaccacataaggttaaggaacttaggacttccttgggcgcgccactatcaggacgtgatttacagtactgcagtgatgcatgtttaaggagatatttggaagcgcggaactggaatgttgagaaatcaaagaagatgttggaagaaaccttaaaatggaggttaacttttaagcctgaagagatccgctggcatgaagttgcaattgaaggtgagaccgggaaggcttacagagcaaattttcatgaccgtgatgggaggactgttcttatcttgagaccgggaatgcagaacacgacagcactagacaaccagatgaggcatttagtgtatctgatagaaaatgcaattcttaatcttccacaagaccaagagcaaatgtcatggttgatagacttcacaggatggtctttaactaacaatgttcctatcaaatctgctcgtgagacggtcaatattttgcagaatcactaccctgaaagacttgctgtagcatttctgtacaaccctccgcggatttttgaagcattttggaagatagtcaagtattttctggatcccaaaacaatgcagaaggtcaaatttgtttatccaaagaacaaggacagtgttgagttgatgaagtcatattttgacatggataatttaccaaatgaattaggaggaaaagcaaatttgaaatatgatcatgaagagttctcaaggcaaatgactcaagatgatgtgaaagctgcaaagttttggagttttgacatacaccccactgaaactaatggctattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="85911" stop="89039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86038" g_stop="86045" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="0.500"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86046" i_stop="86214" i_length="169">
            <donor d_prob="0.469" d_score="0.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86215" g_stop="86291" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="85" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86292" i_stop="86627" i_length="336">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86628" g_stop="86807" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="265" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86808" i_stop="87510" i_length="703">
            <donor d_prob="0.464" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87511" g_stop="87609" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="364" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87610" i_stop="87709" i_length="100">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87710" g_stop="87955" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="610" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="87956" i_stop="88494" i_length="539">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="88495" g_stop="88739" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="855" r_length="245" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E699693" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86038" e_stop="86045"/>
          <exon e_start="86215" e_stop="86291"/>
          <exon e_start="86628" e_stop="86807"/>
          <exon e_start="87511" e_stop="87609"/>
          <exon e_start="87710" e_stop="87955"/>
          <exon e_start="88495" e_stop="88739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGTCAAGTAGAAGTAAGTTCTAATTCCTCTGTGTTTCTATATAAATCTGTTCCTTTTTGAACATTTGTATTGGAGTTTTAGATATGAAAATGTCTTTGTTGATACATGGGAACTTCGATCTTATATTAGTCGATTGTTGAAAGGCCTCACTTTTGTTATACTGGTTTTGCTTCAGTTGCAGTAGCATTTATCATGTTTCGTCGCAAGAGCCATCCCCATAGTGAACAGGAGGGTGAGGATCAACCACATAAGGTGATTAATCGTTGAAAAGTTTATATTGTTGTGTGGAGTTTTCTGTTTCCGAGTGTGTTTGAAGATTTATACGAGTATACAACTTAAGCTTTTAGATGAGATGATCATACACGTGAAAGTAGCTTCAGTAAATTCGCTCTTTCAGAGCTCAAATAGGTCATATTAGGTTCTGTGAGTCTATAAATGCTTGAATATAATCGTTGACATTATAAAGATGCATAACTCTTGATACTTCTGAGGGACTGTGGACGTATTCACGATTAAATCGTGTGTTTTGAACTTGTTCTAATCAGATCATATCTATGAAGTGAGAGGCTCATGTTACTACTATTACAGGTTAAGGAACTTAGGACTTCCTTGGGCGCGCCACTATCAGGACGTGATTTACAGTACTGCAGTGATGCATGTTTAAGGAGATATTTGGAAGCGCGGAACTGGAATGTTGAGAAATCAAAGAAGATGTTGGAAGAAACCTTAAAATGGAGGTTAACTTTTAAGCCTGAAGAGATCCGCTGGGTAAGAAAAGAGACGGTTTTGTATGGTGTGGTTATCTTCTTGTTGAATGTAACATGTTACTAAATCATTCCAGTATGTTTACTTTAGGTCGATATTTGCTAGGAGTGTTTATGCTTGTCACAAACTTATATGCTAACAGACTCGTATATTTCATCGAAAAAAGTACAGGAAAAGAATCATATTGAAAATGCTCCCAACCCACACCTTCCTTTCGTAGAGTCGATGTATTGTAAGTGATCCCAACCTGCCCGGAGTGAGCTTCCCGTAAAGGCAAGTGAAGTTGGTGAGCGATATGATGGATAACTATCTCCTGTTGTTTCGGAGAGGACTCAGCTGTTAGTTAGTACCCCAAGAGATGAACTAACTATAGATTTGTATATGAGTGCACGATATGAAATTTGGGCGGATAGCTAAAAGAAAGTTGATAGAGAAACTATTTTTTTGTATACAATTAGAATAAGACGGGCTTACATAGAGCGATATGGACATGGACAGTGAGTATTCATTCATACAATTATGAATTGGAAAAAAGTACTGCATGACAAACTGTTTGTAGTTATTCTGCAGACATGAAAGATAACATATTTGTGATTGTCGCCTTTATTTATATTTACCAACGATTCATTTTTTCATAATTCATCGTGTTGGTACTAGACGGTTTTCTGATATGTATCTGCTGAACATATAATTTGCACTTTTACAGCATGAAGTTGCAATTGAAGGTGAGACCGGGAAGGCTTACAGAGCAAATTTTCATGACCGTGATGGGAGGACTGTTCTTATCTTGAGACCGGGAATGCAGGTGACATAAGATACCTACTCTAAAGTCTTCAAAATCTGTGTAACGATAACTGCTGAAAAATTCTTGAATTGGTTTCATAGTTTTCGCTTACATTCTGCAGAACACGACAGCACTAGACAACCAGATGAGGCATTTAGTGTATCTGATAGAAAATGCAATTCTTAATCTTCCACAAGACCAAGAGCAAATGTCATGGTTGATAGACTTCACAGGATGGTCTTTAACTAACAATGTTCCTATCAAATCTGCTCGTGAGACGGTCAATATTTTGCAGAATCACTACCCTGAAAGACTTGCTGTAGCATTTCTGTACAACCCTCCGCGGATTTTTGAAGCATTTTGGAAGGTTTGATCTGAATCTTTATCTTTTTCTTTCACCTCTTACCTGTTACTTGATCTAACAAAAACCAAGCAAAACTCGTGATCAGTTATCTTAGTGTGTTAAGGTGTGGGGAGGATACAATCAACATGGAACGCCTTTTATGAAACTTGTTTTCTTTATTGACACCAAAGAAGTCATTTTTCTCATTTTTAAAGAACTTGTGTTCTTATATTTTTTTCAAAAATGTGTTCCTCCATACCAAACACAGTTGATCTCTTTTTTCGGTCATTGCCTTGTTGGTTTACACGTTCATATCGAACCATGTGCTATTATTATCTGGTTCTATTATGTATTTTATTCAAGCATCAACCAACCATAGTTACTTCAGGGAACGCAGCCTGGTGCACAAAGCATCCTGCATTCACGCTGCACGTCGAAGTGTGTGATTGCATCATGTAGGCAACTGATTCCACTGGTCACAATGAGACAACTTTACCATTGCTCCGAGGCACTCCCTTTGTCTTACCTTATATTAATGCTGATTTTCCCCTTTCTTGTTCCAGATAGTCAAGTATTTTCTGGATCCCAAAACAATGCAGAAGGTCAAATTTGTTTATCCAAAGAACAAGGACAGTGTTGAGTTGATGAAGTCATATTTTGACATGGATAATTTACCAAATGAATTAGGAGGAAAAGCAAATTTGAAATATGATCATGAAGAGTTCTCAAGGCAAATGACTCAAGATGATGTGAAAGCTGCAAAGTTTTGGAGTTTTGACATACACCACACTGAAACTAATGGCTATTC</genome_strand>
        <mrna_strand>AATCTAAG.........................................................................................................................................................................TTGCAGTAGCATTTATCATGTTTCGTCGCAAGAGCCATCCCCATAGTGAACAGGAGGGTGAGGATCAACCACATAAG................................................................................................................................................................................................................................................................................................................................................GTTAAGGAACTTAGGACTTCCTTGGGCGCGCCACTATCAGGACGTGATTTACAGTACTGCAGTGATGCATGTTTAAGGAGATATTTGGAAGCGCGGAACTGGAATGTTGAGAAATCAAAGAAGATGTTGGAAGAAACCTTAAAATGGAGGTTAACTTTTAAGCCTGAAGAGATCCGCTGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAAGTTGCAATTGAAGGTGAGACCGGGAAGGCTTACAGAGCAAATTTTCATGACCGTGATGGGAGGACTGTTCTTATCTTGAGACCGGGAATGCAG....................................................................................................AACACGACAGCACTAGACAACCAGATGAGGCATTTAGTGTATCTGATAGAAAATGCAATTCTTAATCTTCCACAAGACCAAGAGCAAATGTCATGGTTGATAGACTTCACAGGATGGTCTTTAACTAACAATGTTCCTATCAAATCTGCTCGTGAGACGGTCAATATTTTGCAGAATCACTACCCTGAAAGACTTGCTGTAGCATTTCTGTACAACCCTCCGCGGATTTTTGAAGCATTTTGGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTCAAGTATTTTCTGGATCCCAAAACAATGCAGAAGGTCAAATTTGTTTATCCAAAGAACAAGGACAGTGTTGAGTTGATGAAGTCATATTTTGACATGGATAATTTACCAAATGAATTAGGAGGAAAAGCAAATTTGAAATATGATCATGAAGAGTTCTCAAGGCAAATGACTCAAGATGATGTGAAAGCTGCAAAGTTTTGGAGTTTTGACATACACCCCACTGAAACTAATGGCTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266673" ref_strand="+" ref_description="SGN-E266673 [cLEI-5-F19]">
      <seq>tttctaacctaagttgcagtagcatttatcatgtttcgtcgcaagagccatccccatagtgaacaggagggtgaggatcaaccacataaggttaaggaacttaggacttccttgggcgcgccactatcaggacgtgatttacagtactgcagtgatgcatgtttaaggagatatttggaagcgcggaactggaatgttgagaaatcaaagaagatgttggaagaaaccttaaaatggaggttaacttttaagcctgaagagatccgctggcatgaagttgcaattgaaggtgagaccgggaaggcttacagagcaaattttcatgaccgtgatgggaggactgttcttatcttgagaccgggaatgcagaacacgacagcactagacaaccagatgaggcatttagtgtatctgatagaaaatgcaattcttaatcttccacaagaccaagagcaaatgtcatggttgatagacttcacaggatggtctttaactaacaatgttcctatcaaatctgctcgtgagacggtcaatattttgcagaatcactaccctgaaagacttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="85904" stop="88207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86215" g_stop="86291" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="90" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86292" i_stop="86627" i_length="336">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86628" g_stop="86807" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="270" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86808" i_stop="87510" i_length="703">
            <donor d_prob="0.464" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87511" g_stop="87609" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="369" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87610" i_stop="87709" i_length="100">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87710" g_stop="87907" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="567" r_length="198" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E266673" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86215" e_stop="86291"/>
          <exon e_start="86628" e_stop="86807"/>
          <exon e_start="87511" e_stop="87609"/>
          <exon e_start="87710" e_stop="87907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAGTAGCATTTATCATGTTTCGTCGCAAGAGCCATCCCCATAGTGAACAGGAGGGTGAGGATCAACCACATAAGGTGATTAATCGTTGAAAAGTTTATATTGTTGTGTGGAGTTTTCTGTTTCCGAGTGTGTTTGAAGATTTATACGAGTATACAACTTAAGCTTTTAGATGAGATGATCATACACGTGAAAGTAGCTTCAGTAAATTCGCTCTTTCAGAGCTCAAATAGGTCATATTAGGTTCTGTGAGTCTATAAATGCTTGAATATAATCGTTGACATTATAAAGATGCATAACTCTTGATACTTCTGAGGGACTGTGGACGTATTCACGATTAAATCGTGTGTTTTGAACTTGTTCTAATCAGATCATATCTATGAAGTGAGAGGCTCATGTTACTACTATTACAGGTTAAGGAACTTAGGACTTCCTTGGGCGCGCCACTATCAGGACGTGATTTACAGTACTGCAGTGATGCATGTTTAAGGAGATATTTGGAAGCGCGGAACTGGAATGTTGAGAAATCAAAGAAGATGTTGGAAGAAACCTTAAAATGGAGGTTAACTTTTAAGCCTGAAGAGATCCGCTGGGTAAGAAAAGAGACGGTTTTGTATGGTGTGGTTATCTTCTTGTTGAATGTAACATGTTACTAAATCATTCCAGTATGTTTACTTTAGGTCGATATTTGCTAGGAGTGTTTATGCTTGTCACAAACTTATATGCTAACAGACTCGTATATTTCATCGAAAAAAGTACAGGAAAAGAATCATATTGAAAATGCTCCCAACCCACACCTTCCTTTCGTAGAGTCGATGTATTGTAAGTGATCCCAACCTGCCCGGAGTGAGCTTCCCGTAAAGGCAAGTGAAGTTGGTGAGCGATATGATGGATAACTATCTCCTGTTGTTTCGGAGAGGACTCAGCTGTTAGTTAGTACCCCAAGAGATGAACTAACTATAGATTTGTATATGAGTGCACGATATGAAATTTGGGCGGATAGCTAAAAGAAAGTTGATAGAGAAACTATTTTTTTGTATACAATTAGAATAAGACGGGCTTACATAGAGCGATATGGACATGGACAGTGAGTATTCATTCATACAATTATGAATTGGAAAAAAGTACTGCATGACAAACTGTTTGTAGTTATTCTGCAGACATGAAAGATAACATATTTGTGATTGTCGCCTTTATTTATATTTACCAACGATTCATTTTTTCATAATTCATCGTGTTGGTACTAGACGGTTTTCTGATATGTATCTGCTGAACATATAATTTGCACTTTTACAGCATGAAGTTGCAATTGAAGGTGAGACCGGGAAGGCTTACAGAGCAAATTTTCATGACCGTGATGGGAGGACTGTTCTTATCTTGAGACCGGGAATGCAGGTGACATAAGATACCTACTCTAAAGTCTTCAAAATCTGTGTAACGATAACTGCTGAAAAATTCTTGAATTGGTTTCATAGTTTTCGCTTACATTCTGCAGAACACGACAGCACTAGACAACCAGATGAGGCATTTAGTGTATCTGATAGAAAATGCAATTCTTAATCTTCCACAAGACCAAGAGCAAATGTCATGGTTGATAGACTTCACAGGATGGTCTTTAACTAACAATGTTCCTATCAAATCTGCTCGTGAGACGGTCAATATTTTGCAGAATCACTACCCTGAAAGACTTGCT</genome_strand>
        <mrna_strand>TTGCAGTAGCATTTATCATGTTTCGTCGCAAGAGCCATCCCCATAGTGAACAGGAGGGTGAGGATCAACCACATAAG................................................................................................................................................................................................................................................................................................................................................GTTAAGGAACTTAGGACTTCCTTGGGCGCGCCACTATCAGGACGTGATTTACAGTACTGCAGTGATGCATGTTTAAGGAGATATTTGGAAGCGCGGAACTGGAATGTTGAGAAATCAAAGAAGATGTTGGAAGAAACCTTAAAATGGAGGTTAACTTTTAAGCCTGAAGAGATCCGCTGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAAGTTGCAATTGAAGGTGAGACCGGGAAGGCTTACAGAGCAAATTTTCATGACCGTGATGGGAGGACTGTTCTTATCTTGAGACCGGGAATGCAG....................................................................................................AACACGACAGCACTAGACAACCAGATGAGGCATTTAGTGTATCTGATAGAAAATGCAATTCTTAATCTTCCACAAGACCAAGAGCAAATGTCATGGTTGATAGACTTCACAGGATGGTCTTTAACTAACAATGTTCCTATCAAATCTGCTCGTGAGACGGTCAATATTTTGCAGAATCACTACCCTGAAAGACTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305287" ref_strand="+" ref_description="SGN-E305287 [cLEX-15-B9]">
      <seq>aaatttctaacctaagttgcagtagcatttatcatgtttcgtcgcaagagccatccccatagtgaacaggagggtgaggatcaaccacataaggttaaggaacttaggacttccttgggcgcgccactatcaggacgtgatttacagtactgcagtgatgcatgtttaaggagatatttggaagcgcggaactggaatgttgagaaatcaaagaagatgttggaagaaaccttaaaatggaggttaacttttaagcctgaagagatccgctggcatgaagttgcaattgaaggtgagaccgggaaggcttacagagcaaattttcatgaccgtgatgggaggactgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="85904" stop="87886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86215" g_stop="86291" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="93" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86292" i_stop="86627" i_length="336">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86628" g_stop="86807" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="273" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86808" i_stop="87510" i_length="703">
            <donor d_prob="0.464" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87511" g_stop="87586" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="349" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E305287" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86215" e_stop="86291"/>
          <exon e_start="86628" e_stop="86807"/>
          <exon e_start="87511" e_stop="87586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAGTAGCATTTATCATGTTTCGTCGCAAGAGCCATCCCCATAGTGAACAGGAGGGTGAGGATCAACCACATAAGGTGATTAATCGTTGAAAAGTTTATATTGTTGTGTGGAGTTTTCTGTTTCCGAGTGTGTTTGAAGATTTATACGAGTATACAACTTAAGCTTTTAGATGAGATGATCATACACGTGAAAGTAGCTTCAGTAAATTCGCTCTTTCAGAGCTCAAATAGGTCATATTAGGTTCTGTGAGTCTATAAATGCTTGAATATAATCGTTGACATTATAAAGATGCATAACTCTTGATACTTCTGAGGGACTGTGGACGTATTCACGATTAAATCGTGTGTTTTGAACTTGTTCTAATCAGATCATATCTATGAAGTGAGAGGCTCATGTTACTACTATTACAGGTTAAGGAACTTAGGACTTCCTTGGGCGCGCCACTATCAGGACGTGATTTACAGTACTGCAGTGATGCATGTTTAAGGAGATATTTGGAAGCGCGGAACTGGAATGTTGAGAAATCAAAGAAGATGTTGGAAGAAACCTTAAAATGGAGGTTAACTTTTAAGCCTGAAGAGATCCGCTGGGTAAGAAAAGAGACGGTTTTGTATGGTGTGGTTATCTTCTTGTTGAATGTAACATGTTACTAAATCATTCCAGTATGTTTACTTTAGGTCGATATTTGCTAGGAGTGTTTATGCTTGTCACAAACTTATATGCTAACAGACTCGTATATTTCATCGAAAAAAGTACAGGAAAAGAATCATATTGAAAATGCTCCCAACCCACACCTTCCTTTCGTAGAGTCGATGTATTGTAAGTGATCCCAACCTGCCCGGAGTGAGCTTCCCGTAAAGGCAAGTGAAGTTGGTGAGCGATATGATGGATAACTATCTCCTGTTGTTTCGGAGAGGACTCAGCTGTTAGTTAGTACCCCAAGAGATGAACTAACTATAGATTTGTATATGAGTGCACGATATGAAATTTGGGCGGATAGCTAAAAGAAAGTTGATAGAGAAACTATTTTTTTGTATACAATTAGAATAAGACGGGCTTACATAGAGCGATATGGACATGGACAGTGAGTATTCATTCATACAATTATGAATTGGAAAAAAGTACTGCATGACAAACTGTTTGTAGTTATTCTGCAGACATGAAAGATAACATATTTGTGATTGTCGCCTTTATTTATATTTACCAACGATTCATTTTTTCATAATTCATCGTGTTGGTACTAGACGGTTTTCTGATATGTATCTGCTGAACATATAATTTGCACTTTTACAGCATGAAGTTGCAATTGAAGGTGAGACCGGGAAGGCTTACAGAGCAAATTTTCATGACCGTGATGGGAGGACTGTTC</genome_strand>
        <mrna_strand>TTGCAGTAGCATTTATCATGTTTCGTCGCAAGAGCCATCCCCATAGTGAACAGGAGGGTGAGGATCAACCACATAAG................................................................................................................................................................................................................................................................................................................................................GTTAAGGAACTTAGGACTTCCTTGGGCGCGCCACTATCAGGACGTGATTTACAGTACTGCAGTGATGCATGTTTAAGGAGATATTTGGAAGCGCGGAACTGGAATGTTGAGAAATCAAAGAAGATGTTGGAAGAAACCTTAAAATGGAGGTTAACTTTTAAGCCTGAAGAGATCCGCTGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAAGTTGCAATTGAAGGTGAGACCGGGAAGGCTTACAGAGCAAATTTTCATGACCGTGATGGGAGGACTGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544686" ref_strand="+" ref_description="SGN-E544686 [TUS-67-C9]">
      <seq>tttcgtcgcaagagccatccccatagtgaacaggagggtgaggatcaaccacataaggttaaggaacttaggacttccttgggcgcgccactatcaggacgtgatttacagtactgcagtgatgcatgtttaaggagatatttggaagcgcggaactggaatgttgagaaatcaaagaagatgttggaaagaaacccttaaatggaggttaacttttaagcctgaagagatccgctggcatgaagttgcaattgaaggtgagaccgggaaggcttacagagcaaattttcatgaccgtgatgggaggactgttcttatcttgagaccgggaatgcagaacacgacagcactagacaaccagatgaggcattttagtgtatctgatagaaaatgcaattcttaatcttccacaagaccaagagcaaaatgtcatgggttgatagacttcacangatggtctttaactaacaatgttcctatcaaatctgctcgtgagacgggtcaaatatttgcagaatcactacccctgaagacttgctgtagcatttctgtacaaccctccgcggatttttgaagcatttttgaagatagtcaagtatttttctgggatccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="85935" stop="88819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86235" g_stop="86291" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86292" i_stop="86627" i_length="336">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86628" g_stop="86807" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="238" r_length="181" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86808" i_stop="87510" i_length="703">
            <donor d_prob="0.464" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87511" g_stop="87609" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="337" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87610" i_stop="87709" i_length="100">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87710" g_stop="87955" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="587" r_length="250" r_score="0.935"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87956" i_stop="88494" i_length="539">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88495" g_stop="88519" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="614" r_length="27" r_score="0.840"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E544686" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86235" e_stop="86291"/>
          <exon e_start="86628" e_stop="86807"/>
          <exon e_start="87511" e_stop="87609"/>
          <exon e_start="87710" e_stop="87955"/>
          <exon e_start="88495" e_stop="88519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCGTCGCAAGAGCCATCCCCATAGTGAACAGGAGGGTGAGGATCAACCACATAAGGTGATTAATCGTTGAAAAGTTTATATTGTTGTGTGGAGTTTTCTGTTTCCGAGTGTGTTTGAAGATTTATACGAGTATACAACTTAAGCTTTTAGATGAGATGATCATACACGTGAAAGTAGCTTCAGTAAATTCGCTCTTTCAGAGCTCAAATAGGTCATATTAGGTTCTGTGAGTCTATAAATGCTTGAATATAATCGTTGACATTATAAAGATGCATAACTCTTGATACTTCTGAGGGACTGTGGACGTATTCACGATTAAATCGTGTGTTTTGAACTTGTTCTAATCAGATCATATCTATGAAGTGAGAGGCTCATGTTACTACTATTACAGGTTAAGGAACTTAGGACTTCCTTGGGCGCGCCACTATCAGGACGTGATTTACAGTACTGCAGTGATGCATGTTTAAGGAGATATTTGGAAGCGCGGAACTGGAATGTTGAGAAATCAAAGAAGATGTTGG-AAGAAACCTTAAAATGGAGGTTAACTTTTAAGCCTGAAGAGATCCGCTGGGTAAGAAAAGAGACGGTTTTGTATGGTGTGGTTATCTTCTTGTTGAATGTAACATGTTACTAAATCATTCCAGTATGTTTACTTTAGGTCGATATTTGCTAGGAGTGTTTATGCTTGTCACAAACTTATATGCTAACAGACTCGTATATTTCATCGAAAAAAGTACAGGAAAAGAATCATATTGAAAATGCTCCCAACCCACACCTTCCTTTCGTAGAGTCGATGTATTGTAAGTGATCCCAACCTGCCCGGAGTGAGCTTCCCGTAAAGGCAAGTGAAGTTGGTGAGCGATATGATGGATAACTATCTCCTGTTGTTTCGGAGAGGACTCAGCTGTTAGTTAGTACCCCAAGAGATGAACTAACTATAGATTTGTATATGAGTGCACGATATGAAATTTGGGCGGATAGCTAAAAGAAAGTTGATAGAGAAACTATTTTTTTGTATACAATTAGAATAAGACGGGCTTACATAGAGCGATATGGACATGGACAGTGAGTATTCATTCATACAATTATGAATTGGAAAAAAGTACTGCATGACAAACTGTTTGTAGTTATTCTGCAGACATGAAAGATAACATATTTGTGATTGTCGCCTTTATTTATATTTACCAACGATTCATTTTTTCATAATTCATCGTGTTGGTACTAGACGGTTTTCTGATATGTATCTGCTGAACATATAATTTGCACTTTTACAGCATGAAGTTGCAATTGAAGGTGAGACCGGGAAGGCTTACAGAGCAAATTTTCATGACCGTGATGGGAGGACTGTTCTTATCTTGAGACCGGGAATGCAGGTGACATAAGATACCTACTCTAAAGTCTTCAAAATCTGTGTAACGATAACTGCTGAAAAATTCTTGAATTGGTTTCATAGTTTTCGCTTACATTCTGCAGAACACGACAGCACTAGACAACCAGATGAGGCA-TTTAGTGTATCTGATAGAAAATGCAATTCTTAATCTTCCACAAGACCAAGAGC-AAATGTCAT-GGTTGATAGACTTCACAGGATGGTCTTTAACTAACAATGTTCCTATCAAATCTGCTCGTGAGAC-GGTCAATATTTTGCAGAATCACTACCCTGAAAGACTTGCTGTAGCATTTCTGTACAACCCTCCGCGGATTTTTGAAGCATTTTGGAAGGTTTGATCTGAATCTTTATCTTTTTCTTTCACCTCTTACCTGTTACTTGATCTAACAAAAACCAAGCAAAACTCGTGATCAGTTATCTTAGTGTGTTAAGGTGTGGGGAGGATACAATCAACATGGAACGCCTTTTATGAAACTTGTTTTCTTTATTGACACCAAAGAAGTCATTTTTCTCATTTTTAAAGAACTTGTGTTCTTATATTTTTTTCAAAAATGTGTTCCTCCATACCAAACACAGTTGATCTCTTTTTTCGGTCATTGCCTTGTTGGTTTACACGTTCATATCGAACCATGTGCTATTATTATCTGGTTCTATTATGTATTTTATTCAAGCATCAACCAACCATAGTTACTTCAGGGAACGCAGCCTGGTGCACAAAGCATCCTGCATTCACGCTGCACGTCGAAGTGTGTGATTGCATCATGTAGGCAACTGATTCCACTGGTCACAATGAGACAACTTTACCATTGCTCCGAGGCACTCCCTTTGTCTTACCTTATATTAATGCTGATTTTCCCCTTTCTTGTTCCAGATAGTCAAGTA-TTTTCT-GGATCCCA</genome_strand>
        <mrna_strand>TTTCGTCGCAAGAGCCATCCCCATAGTGAACAGGAGGGTGAGGATCAACCACATAAG................................................................................................................................................................................................................................................................................................................................................GTTAAGGAACTTAGGACTTCCTTGGGCGCGCCACTATCAGGACGTGATTTACAGTACTGCAGTGATGCATGTTTAAGGAGATATTTGGAAGCGCGGAACTGGAATGTTGAGAAATCAAAGAAGATGTTGGAAAGAAACCCTTAAATGGAGGTTAACTTTTAAGCCTGAAGAGATCCGCTGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAAGTTGCAATTGAAGGTGAGACCGGGAAGGCTTACAGAGCAAATTTTCATGACCGTGATGGGAGGACTGTTCTTATCTTGAGACCGGGAATGCAG....................................................................................................AACACGACAGCACTAGACAACCAGATGAGGCATTTTAGTGTATCTGATAGAAAATGCAATTCTTAATCTTCCACAAGACCAAGAGCAAAATGTCATGGGTTGATAGACTTCACANGATGGTCTTTAACTAACAATGTTCCTATCAAATCTGCTCGTGAGACGGGTCAAATATTTGCAGAATCACTACCCCTGAAGACTTGCTGTAGCATTTCTGTACAACCCTCCGCGGATTTTTGAAGCATTTTTGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTCAAGTATTTTTCTGGGATCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305157" ref_strand="+" ref_description="SGN-E305157 [cLEY-18-D15]">
      <seq>ttcgtcgcaagagccatccccatagtgaacaggagggtgaggatcaaccacataaggttaaggaacttaggacttccttgggcgcgccactatcaggacgtgatttacagtactgcagtgatgcatgtttaaggagatatttggaagcgcggaactggaatgttgagaaatcaaagaagatgttggaagaaaccttaaaatggaggttaacttttaagcctgaagagatccgctggcatgaagttgcaattgaaggtgagaccgggaaggcttacagagcaaattttcatgaccgtgatgggaggactgttcttatcttgagaccgggaatgcagaacacgacagcactagacaaccagatgaggcatttagtgtatctgatagaaaatgcaattcttaatcttccacaagaccaagagcaaatgtcatggttgatagacttcacaggatggtctttaactaacaatgttcctatcaaatctgctcgtgagacggtcaatattttgcagaatcactaccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="85936" stop="88196"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86236" g_stop="86291" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86292" i_stop="86627" i_length="336">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86628" g_stop="86807" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="236" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86808" i_stop="87510" i_length="703">
            <donor d_prob="0.464" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87511" g_stop="87609" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="335" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87610" i_stop="87709" i_length="100">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87710" g_stop="87896" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="522" r_length="187" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E305157" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86236" e_stop="86291"/>
          <exon e_start="86628" e_stop="86807"/>
          <exon e_start="87511" e_stop="87609"/>
          <exon e_start="87710" e_stop="87896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGTCGCAAGAGCCATCCCCATAGTGAACAGGAGGGTGAGGATCAACCACATAAGGTGATTAATCGTTGAAAAGTTTATATTGTTGTGTGGAGTTTTCTGTTTCCGAGTGTGTTTGAAGATTTATACGAGTATACAACTTAAGCTTTTAGATGAGATGATCATACACGTGAAAGTAGCTTCAGTAAATTCGCTCTTTCAGAGCTCAAATAGGTCATATTAGGTTCTGTGAGTCTATAAATGCTTGAATATAATCGTTGACATTATAAAGATGCATAACTCTTGATACTTCTGAGGGACTGTGGACGTATTCACGATTAAATCGTGTGTTTTGAACTTGTTCTAATCAGATCATATCTATGAAGTGAGAGGCTCATGTTACTACTATTACAGGTTAAGGAACTTAGGACTTCCTTGGGCGCGCCACTATCAGGACGTGATTTACAGTACTGCAGTGATGCATGTTTAAGGAGATATTTGGAAGCGCGGAACTGGAATGTTGAGAAATCAAAGAAGATGTTGGAAGAAACCTTAAAATGGAGGTTAACTTTTAAGCCTGAAGAGATCCGCTGGGTAAGAAAAGAGACGGTTTTGTATGGTGTGGTTATCTTCTTGTTGAATGTAACATGTTACTAAATCATTCCAGTATGTTTACTTTAGGTCGATATTTGCTAGGAGTGTTTATGCTTGTCACAAACTTATATGCTAACAGACTCGTATATTTCATCGAAAAAAGTACAGGAAAAGAATCATATTGAAAATGCTCCCAACCCACACCTTCCTTTCGTAGAGTCGATGTATTGTAAGTGATCCCAACCTGCCCGGAGTGAGCTTCCCGTAAAGGCAAGTGAAGTTGGTGAGCGATATGATGGATAACTATCTCCTGTTGTTTCGGAGAGGACTCAGCTGTTAGTTAGTACCCCAAGAGATGAACTAACTATAGATTTGTATATGAGTGCACGATATGAAATTTGGGCGGATAGCTAAAAGAAAGTTGATAGAGAAACTATTTTTTTGTATACAATTAGAATAAGACGGGCTTACATAGAGCGATATGGACATGGACAGTGAGTATTCATTCATACAATTATGAATTGGAAAAAAGTACTGCATGACAAACTGTTTGTAGTTATTCTGCAGACATGAAAGATAACATATTTGTGATTGTCGCCTTTATTTATATTTACCAACGATTCATTTTTTCATAATTCATCGTGTTGGTACTAGACGGTTTTCTGATATGTATCTGCTGAACATATAATTTGCACTTTTACAGCATGAAGTTGCAATTGAAGGTGAGACCGGGAAGGCTTACAGAGCAAATTTTCATGACCGTGATGGGAGGACTGTTCTTATCTTGAGACCGGGAATGCAGGTGACATAAGATACCTACTCTAAAGTCTTCAAAATCTGTGTAACGATAACTGCTGAAAAATTCTTGAATTGGTTTCATAGTTTTCGCTTACATTCTGCAGAACACGACAGCACTAGACAACCAGATGAGGCATTTAGTGTATCTGATAGAAAATGCAATTCTTAATCTTCCACAAGACCAAGAGCAAATGTCATGGTTGATAGACTTCACAGGATGGTCTTTAACTAACAATGTTCCTATCAAATCTGCTCGTGAGACGGTCAATATTTTGCAGAATCACTACCCTG</genome_strand>
        <mrna_strand>TTCGTCGCAAGAGCCATCCCCATAGTGAACAGGAGGGTGAGGATCAACCACATAAG................................................................................................................................................................................................................................................................................................................................................GTTAAGGAACTTAGGACTTCCTTGGGCGCGCCACTATCAGGACGTGATTTACAGTACTGCAGTGATGCATGTTTAAGGAGATATTTGGAAGCGCGGAACTGGAATGTTGAGAAATCAAAGAAGATGTTGGAAGAAACCTTAAAATGGAGGTTAACTTTTAAGCCTGAAGAGATCCGCTGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAAGTTGCAATTGAAGGTGAGACCGGGAAGGCTTACAGAGCAAATTTTCATGACCGTGATGGGAGGACTGTTCTTATCTTGAGACCGGGAATGCAG....................................................................................................AACACGACAGCACTAGACAACCAGATGAGGCATTTAGTGTATCTGATAGAAAATGCAATTCTTAATCTTCCACAAGACCAAGAGCAAATGTCATGGTTGATAGACTTCACAGGATGGTCTTTAACTAACAATGTTCCTATCAAATCTGCTCGTGAGACGGTCAATATTTTGCAGAATCACTACCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544685" ref_strand="+" ref_description="SGN-E544685 [TUS-67-C9](-)">
      <seq>gaagagatccgctggcatgaagttgcaattgaaggtgagaccgggaaggcttacagagcaaattttcatgaccgtgatgggaggactgttcttatcttgagaccgggaatgcagaacacgacagcactagacaaccagatgaggcatttagtgtatctgatagaaaatgcaattcttaatcttccacaagaccaagagcaaatgtcatggttgatagacttcacaggatggtctttaactaacaatgttcctatcaaatctgctcgtgagacggtcaatattttgcagaatcactaccctgaaagacttgctgtagcatttctgtacaaccctccgcggatttttgaagcattttggaagatagtcaagtattttctggatcccaaaacaatgcagaaggtcaaatttgtttatccaaagaacaaggacagtgttgagttgatgaagtcatattttgacatggataatttaccaaatgaattaggaggaaaagcaaatttgaaatatgatcatgaagagttctcaaggcaaatgactcaagatgatgtgaaagctgcaaagttttggagttttgacatacaccacactgaaactaatggctattctgcagctgaggttgctccaaagactgagtgtcttgctccaccagttaaagtttagatgcttttgctagagttacttaaaactttgttagatgctttgttatgatataacaaatgtaagatgttaagaatttgcattttaaatactaggcaataaacactaggtgattacttttcgtctaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="87210" stop="89218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87511" g_stop="87609" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="114" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87610" i_stop="87709" i_length="100">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87710" g_stop="87955" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="360" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87956" i_stop="88494" i_length="539">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88495" g_stop="88917" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="783" r_length="423" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="784" polyA_stop="799"/>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E544685" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87511" e_stop="87609"/>
          <exon e_start="87710" e_stop="87955"/>
          <exon e_start="88495" e_stop="88917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGAAGTTGCAATTGAAGGTGAGACCGGGAAGGCTTACAGAGCAAATTTTCATGACCGTGATGGGAGGACTGTTCTTATCTTGAGACCGGGAATGCAGGTGACATAAGATACCTACTCTAAAGTCTTCAAAATCTGTGTAACGATAACTGCTGAAAAATTCTTGAATTGGTTTCATAGTTTTCGCTTACATTCTGCAGAACACGACAGCACTAGACAACCAGATGAGGCATTTAGTGTATCTGATAGAAAATGCAATTCTTAATCTTCCACAAGACCAAGAGCAAATGTCATGGTTGATAGACTTCACAGGATGGTCTTTAACTAACAATGTTCCTATCAAATCTGCTCGTGAGACGGTCAATATTTTGCAGAATCACTACCCTGAAAGACTTGCTGTAGCATTTCTGTACAACCCTCCGCGGATTTTTGAAGCATTTTGGAAGGTTTGATCTGAATCTTTATCTTTTTCTTTCACCTCTTACCTGTTACTTGATCTAACAAAAACCAAGCAAAACTCGTGATCAGTTATCTTAGTGTGTTAAGGTGTGGGGAGGATACAATCAACATGGAACGCCTTTTATGAAACTTGTTTTCTTTATTGACACCAAAGAAGTCATTTTTCTCATTTTTAAAGAACTTGTGTTCTTATATTTTTTTCAAAAATGTGTTCCTCCATACCAAACACAGTTGATCTCTTTTTTCGGTCATTGCCTTGTTGGTTTACACGTTCATATCGAACCATGTGCTATTATTATCTGGTTCTATTATGTATTTTATTCAAGCATCAACCAACCATAGTTACTTCAGGGAACGCAGCCTGGTGCACAAAGCATCCTGCATTCACGCTGCACGTCGAAGTGTGTGATTGCATCATGTAGGCAACTGATTCCACTGGTCACAATGAGACAACTTTACCATTGCTCCGAGGCACTCCCTTTGTCTTACCTTATATTAATGCTGATTTTCCCCTTTCTTGTTCCAGATAGTCAAGTATTTTCTGGATCCCAAAACAATGCAGAAGGTCAAATTTGTTTATCCAAAGAACAAGGACAGTGTTGAGTTGATGAAGTCATATTTTGACATGGATAATTTACCAAATGAATTAGGAGGAAAAGCAAATTTGAAATATGATCATGAAGAGTTCTCAAGGCAAATGACTCAAGATGATGTGAAAGCTGCAAAGTTTTGGAGTTTTGACATACACCACACTGAAACTAATGGCTATTCTGCAGCTGAGGTTGCTCCAAAGACTGAGTGTCTTGCTCCACCAGTTAAAGTTTAGATGCTTTTGCTAGAGTTACTTAAAACTTTGTTAGATGCTTTGTTATGATATAACAAATGTAAGATGTTAAGAATTTGCATTTTAAATACTAGGCAATAAACACTAGGTGATTACTTTTCGTCT</genome_strand>
        <mrna_strand>CATGAAGTTGCAATTGAAGGTGAGACCGGGAAGGCTTACAGAGCAAATTTTCATGACCGTGATGGGAGGACTGTTCTTATCTTGAGACCGGGAATGCAG....................................................................................................AACACGACAGCACTAGACAACCAGATGAGGCATTTAGTGTATCTGATAGAAAATGCAATTCTTAATCTTCCACAAGACCAAGAGCAAATGTCATGGTTGATAGACTTCACAGGATGGTCTTTAACTAACAATGTTCCTATCAAATCTGCTCGTGAGACGGTCAATATTTTGCAGAATCACTACCCTGAAAGACTTGCTGTAGCATTTCTGTACAACCCTCCGCGGATTTTTGAAGCATTTTGGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTCAAGTATTTTCTGGATCCCAAAACAATGCAGAAGGTCAAATTTGTTTATCCAAAGAACAAGGACAGTGTTGAGTTGATGAAGTCATATTTTGACATGGATAATTTACCAAATGAATTAGGAGGAAAAGCAAATTTGAAATATGATCATGAAGAGTTCTCAAGGCAAATGACTCAAGATGATGTGAAAGCTGCAAAGTTTTGGAGTTTTGACATACACCACACTGAAACTAATGGCTATTCTGCAGCTGAGGTTGCTCCAAAGACTGAGTGTCTTGCTCCACCAGTTAAAGTTTAGATGCTTTTGCTAGAGTTACTTAAAACTTTGTTAGATGCTTTGTTATGATATAACAAATGTAAGATGTTAAGAATTTGCATTTTAAATACTAGGCAATAAACACTAGGTGATTACTTTTCGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353714" ref_strand="+" ref_description="SGN-E353714 [cTOS-10-K5]">
      <seq>gagacggtcaatattttgcagaatcactaccctgaaagacttgctgtagcatttctgtacaaccctccgcggatttttgaagcattttggaagatagtcaagtattttctggatcccaaaacaatgcagaaggtcaaatttgtttatccaaagaacaaggacagtgttgagttgatgaagtcatattttgacatggataatttaccaaatgaattaggaggaaaagcaaatttgaaatatgatcatgaagagttctcaaggcaaatgactcaagatgatgtgaaagctgcaaagttttggagttttgacatacaccacactgaaactaatggctattctgcagctgaaggtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="+" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="87563" stop="89055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87863" g_stop="87955" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87956" i_stop="88494" i_length="539">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88495" g_stop="88755" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="354" r_length="261" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="+" ref_id="SGN-E353714" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87863" e_stop="87955"/>
          <exon e_start="88495" e_stop="88755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACGGTCAATATTTTGCAGAATCACTACCCTGAAAGACTTGCTGTAGCATTTCTGTACAACCCTCCGCGGATTTTTGAAGCATTTTGGAAGGTTTGATCTGAATCTTTATCTTTTTCTTTCACCTCTTACCTGTTACTTGATCTAACAAAAACCAAGCAAAACTCGTGATCAGTTATCTTAGTGTGTTAAGGTGTGGGGAGGATACAATCAACATGGAACGCCTTTTATGAAACTTGTTTTCTTTATTGACACCAAAGAAGTCATTTTTCTCATTTTTAAAGAACTTGTGTTCTTATATTTTTTTCAAAAATGTGTTCCTCCATACCAAACACAGTTGATCTCTTTTTTCGGTCATTGCCTTGTTGGTTTACACGTTCATATCGAACCATGTGCTATTATTATCTGGTTCTATTATGTATTTTATTCAAGCATCAACCAACCATAGTTACTTCAGGGAACGCAGCCTGGTGCACAAAGCATCCTGCATTCACGCTGCACGTCGAAGTGTGTGATTGCATCATGTAGGCAACTGATTCCACTGGTCACAATGAGACAACTTTACCATTGCTCCGAGGCACTCCCTTTGTCTTACCTTATATTAATGCTGATTTTCCCCTTTCTTGTTCCAGATAGTCAAGTATTTTCTGGATCCCAAAACAATGCAGAAGGTCAAATTTGTTTATCCAAAGAACAAGGACAGTGTTGAGTTGATGAAGTCATATTTTGACATGGATAATTTACCAAATGAATTAGGAGGAAAAGCAAATTTGAAATATGATCATGAAGAGTTCTCAAGGCAAATGACTCAAGATGATGTGAAAGCTGCAAAGTTTTGGAGTTTTGACATACACCACACTGAAACTAATGGCTATTCTGCAGCTGAGGTTGCT</genome_strand>
        <mrna_strand>GAGACGGTCAATATTTTGCAGAATCACTACCCTGAAAGACTTGCTGTAGCATTTCTGTACAACCCTCCGCGGATTTTTGAAGCATTTTGGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTCAAGTATTTTCTGGATCCCAAAACAATGCAGAAGGTCAAATTTGTTTATCCAAAGAACAAGGACAGTGTTGAGTTGATGAAGTCATATTTTGACATGGATAATTTACCAAATGAATTAGGAGGAAAAGCAAATTTGAAATATGATCATGAAGAGTTCTCAAGGCAAATGACTCAAGATGATGTGAAAGCTGCAAAGTTTTGGAGTTTTGACATACACCACACTGAAACTAATGGCTATTCTGCAGCTGAAGGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E431587" ref_strand="-" ref_description="SGN-E431587 [STM-55-P21]">
      <seq>aaagcagtagcaggagatggaacatggatgtgaaatcggtgatgaatgctggcactggtttcctgaagggtaaacaaattatggattctgaatcattatcaccaacaattgaagtctttattactggttgcttctccgggacgcctatcatcttgaccaagagtttgcagctcaatcatcggaagaagcacaacaggaagggtatgttacactcaatcccggagcatgaaacagatgaacagcagaaagatgtctcatctgaacttgatctgcaggttacagagtatagaaagtatgaaccagaaagcgaagaagactacaacatgtattggagacaaacggaatatatggatggtgaagatggggaactatcctggttcaatgctggggtccgtgttggtgtagggatcggccttggcatttgcgtaggagttggaataggagttggcctgttagtccgcacctaccagactactacgcggaacttcagaaggcttgtgtgattatgtagcggtagctgcatttgtttttgcatagaccaaactgctaacaacagatatatgcttgtcttgagagtgtgaattctgctcattagacagtttcactgtagctaaccatcatacattttcgtgttaacttacttcctgctaccttttcgtcttcccttgccccatccccgtccccgtgttaagtctctttgtacccccttcttgtgttggatttaggtgtgcaacttcttactgttgtagatgttccattctgttgcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="-" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="92474" stop="89248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92174" g_stop="91900" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91899" i_stop="90040" i_length="1860">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90039" g_stop="89555" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="764" r_length="489" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="767" polyA_stop="783"/>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="-" ref_id="SGN-E431587" ref_strand="-">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E431587" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="92174" e_stop="91900"/>
          <exon e_start="90039" e_stop="89555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACAGTGGCAAGAGATGGAACATGAATTGTGAATCGGTGATGAATGCTGGCACTGGTTTCCTGAAGGGTAAACAAATTATGGATTCTGAATCATTTTCACCAACAATTGAAGTCTTTATTACTGGTTGCTTCTCCGGGACACCTATCATCTTGACCAAGAGTTTGCAGCTCAATCATCGGAAGAAGCACAACAGGAAGGGTATGTTGCACTCAATCCCGGAGCATGAAACAGATGAGCAGCAGAAAGATGTCTCATCTGAACTTGATCTGCAGGTATAATTGGTAGTTCATCACCTTTTTTTTGAGGTCCATTTGGTATAATATCTAGCATTTTCGAATTCTATAATGCATAGTAAAATGCAAAAACAGCTAATAGGACACATCCGAACAGTCAACATAATTGGATATCCACTGGTATCTTTAAATGTACTGACAAAATCAGTTAACAAACCTCAAAATGCTTGCTATATACTTTTGCATACATTAAGAACCATTAATTTTCGTAAATATTATGAAGATAACCGTTAGTTGCAGTGTTTGGGACAAAAATGATCGCTTTTTGCGTACATTGAGGACCAACAACAACAACATACCCTGTGTAATCCCACAAAGTGGGGTCTAGGGAGGGTAGAGTGTACACAGACTCAACCCCTACCTCAAAGGTAGAGGGGTTGTTTTTGATATACCCTCGGTTCAAGAAGAAAAACAGTTCAAAGCAGTCCAAGAAAAGAAGTAATGCAAGAAACAACAGATAGTAACAATCGCATGTGGCTTTATTCATGCTTCATATCTTTCTTTTTCTTTTTTTTGGATAAAGCTGTTCATGCTTCGTATGATGAAACATGTTTCTGTGTTACATCATACCTAAAGGCCTGTATCTTTTAGAATCTTATCCTAATCAAGTGTCATTGGGTATGGGCTGAGACATACCTTCATATGATTCTTTAATATTAAATTATGTGTCTCCCATGTTGCATTGTTTCAAAGTCTTTAAGATCTTGATTTGTGGGGTCATTATCCTTTTTCTTTATTTGAAGGAATTGGAAATTGCTTTTTACAAAAAAGTTGCACAAAGGAGGTGCTACTATTCAGATTCTTTTTTTAAAAAAAATAACATCTAATTTGAATTGTAGGAAACTAGTAAAGTTTACTAGAATGTCTGAAGTGTTCACATTTTTAAGATCAAACCAAGATGCAATAGAATATAGATTTTTTAGTTTAGCTGTAAGGATAACACGCCGTCTGCAGTTCCACAACACATGTGATAGAATAGTACTCCAGATCTTCCGATTTGTTTGCTTCTGTTTCATTCGTAGCCTGTCTAACTTGTGTGAACCCGAAACAAAATTTCAAAGATAGTGAAAAAAAAATCCCGTGTTAGTAGTACAATATTGAAGTGTCGAGCTGCAAAAGTCCAAGTCCTTAGATTTGTTTTAATTATCCCATGTCTATCTGTTCCTAATAATGTTGTCTGTGCTATGCATAATATCTTGGACATCGATTATCCTATCTGATAAGATTGGAAAAGGAAACAAAAGCCCTCCCCCAATCCTTTAGGATCCTCCTTTTCACGGATCCGAATGAAGTGGTGGTGGTTTGCATTAAATAGAAATATTATCATTTGCTACCTACGAATACTAGCAAACATTTTAAAATGCTATGAAGGATGAGTACTCTATATACTTCCTCCATGAATACTGGCGAAAATTAAACAAATGCTAGAACAGACGACTATTGCTTCCTGATTTTTATGGCATTTGTGATGAATTTTTTCAAAAAAAATAAATTAAGAAATCCGTAGCTTTTCACTTGCTATAACAACCTTGTAAATTTGTTCTTTTCTTTTGTAATGTCTTACGCGTGATAGAGGACTAGTGTAATGTTTCTGTTGACTGTATTGTAGGCCTATTATGCTGCTTTAGTTTTGAAGTTGAAAGATGAAAAAAGGAAAGGATGTTTATGTTTGCCTCACTTTCAGATTTTTAAGTTCCCTTTGTCAATTCTTCGTTCGATTTTCATAGATGGTTGCTGGCTTTTACCATATCTTAATTACTATATATGGGAAAGTGGATCTTTCAATCATAACTAGAACAAGAATTTGCACAGCTTCTGAACTTCATTGTGTGTTCACAGGTTACAGAGTATAGAAAGTATGAACTAGAAAGCGAAGAAGACTACAACATGTATTGGAGACAAACGGAATATATGGATGGTGAAGATGGGGAACTGTCCTGGTTCAATGCTGGGGTCCGTGTTGGTGTAGGGATCGGTCTTGGCATTTGCGTAGGAGTTGGAATAGGAGTTGGCCTGTTAGTCCGCACCTACCAGACTACTACGAGGAACTTCAGAAGGCTTGTGTGATTATGTAGCGTTTGCTGCATTTGTTTTTGCATAGACCAAACGGCTAACAACAGATATATGTTTGTCTTGAGAGTGTGAATTCTGCTCATTAGACAGTTTCAGTGTAGCTAACCATCATACATTTTCGTGTTAACTTACTTCCTGCTAGCTTTTCGTCTTCCCATGCCCCATCCCCGT-GTTAAGTTAAGTCTCTTTGTAC---CTCCTTGTTTTGGATTTAGGTGTGCAAACTCTTACTGTTGTAGATGTTCCATTCTGTT</genome_strand>
        <mrna_strand>AAAGCAGTAGCAGGAGATGGAACATGGATGTGAAATCGGTGATGAATGCTGGCACTGGTTTCCTGAAGGGTAAACAAATTATGGATTCTGAATCATTATCACCAACAATTGAAGTCTTTATTACTGGTTGCTTCTCCGGGACGCCTATCATCTTGACCAAGAGTTTGCAGCTCAATCATCGGAAGAAGCACAACAGGAAGGGTATGTTACACTCAATCCCGGAGCATGAAACAGATGAACAGCAGAAAGATGTCTCATCTGAACTTGATCTGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACAGAGTATAGAAAGTATGAACCAGAAAGCGAAGAAGACTACAACATGTATTGGAGACAAACGGAATATATGGATGGTGAAGATGGGGAACTATCCTGGTTCAATGCTGGGGTCCGTGTTGGTGTAGGGATCGGCCTTGGCATTTGCGTAGGAGTTGGAATAGGAGTTGGCCTGTTAGTCCGCACCTACCAGACTACTACGCGGAACTTCAGAAGGCTTGTGTGATTATGTAGCGGTAGCTGCATTTGTTTTTGCATAGACCAAACTGCTAACAACAGATATATGCTTGTCTTGAGAGTGTGAATTCTGCTCATTAGACAGTTTCACTGTAGCTAACCATCATACATTTTCGTGTTAACTTACTTCCTGCTACCTTTTCGTCTTCCCTTGCCCCATCCCCGTCCCCGTGTTAAGTCTCTTTGTACCCCCTTCTTGTGTTGGATTTAGGTGTGCAACTTCTTACTGTTGTAGATGTTCCATTCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E464628" ref_strand="-" ref_description="SGN-E464628 [cPRO-18-J1]">
      <seq>cagattactacgcggaacttcagaaggcttgtgtgattatgtagcggtagctgcatttgtttttgcatagaccaaactgctaacaacagatatatgcttgtcttgagagtgtgaattctgctcattagacagtttcactgtagctaaccatcatacattttcgtgttaacttacttcctgctaccttttcgtcttcccttgccccatccccgtccccgtgttaagtctctttgtacccccttcttgtgttggatttaggtgtgcaacttcttactgttgtagatgttccattctgttgcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="-" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="90147" stop="89248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89847" g_stop="89555" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="300" polyA_stop="316"/>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="-" ref_id="SGN-E464628" ref_strand="-">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>293</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E464628" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="89847" e_stop="89555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGACTACTACGAGGAACTTCAGAAGGCTTGTGTGATTATGTAGCGTTTGCTGCATTTGTTTTTGCATAGACCAAACGGCTAACAACAGATATATGTTTGTCTTGAGAGTGTGAATTCTGCTCATTAGACAGTTTCAGTGTAGCTAACCATCATACATTTTCGTGTTAACTTACTTCCTGCTAGCTTTTCGTCTTCCCATGCCCCATCCCCGT-GTTAAGTTAAGTCTCTTTGTAC---CTCCTTGTTTTGGATTTAGGTGTGCAAACTCTTACTGTTGTAGATGTTCCATTCTGTT</genome_strand>
        <mrna_strand>CAGATTACTACGCGGAACTTCAGAAGGCTTGTGTGATTATGTAGCGGTAGCTGCATTTGTTTTTGCATAGACCAAACTGCTAACAACAGATATATGCTTGTCTTGAGAGTGTGAATTCTGCTCATTAGACAGTTTCACTGTAGCTAACCATCATACATTTTCGTGTTAACTTACTTCCTGCTACCTTTTCGTCTTCCCTTGCCCCATCCCCGTCCCCGTGTTAAGTCTCTTTGTACCCCCTTCTTGTGTTGGATTTAGGTGTGCAACTTCTTACTGTTGTAGATGTTCCATTCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576521" ref_strand="+" ref_description="SGN-E576521 [59753]">
      <seq>ggaatatcttactctcaaccacattcctctaagtcccgatacattgcttgaagttaatggaacaagatgttccatgtattcagaaggagcatcttgtctccttcgaagggatcgggttgataagaaatccgaagaagctacatttgtgagcacggatagtataaggttgacaggaagtgtgaaatttgaggttttcgataaagatgatcttgtgctctcggggtttttagagatgtcgaatagtaatggttttgttggggagtctaaaagcagtagcaggagatggaacatggattgtgaatcggtgatgaatgctggcactggtttcctgaagggtaaacaaattatggattctgaatcattatcaccaacaattgaagtttttattactgcttgcttctccgggacgcctatcatcttgaccaagagtttgcagctcaatcatcggaagaagcacaacaggaagggtatgctacactcaatcccggagcatgaaacagatgaacagcagaaagatgtctcatctgaacttgatctgcaggttacagagtatagaaagtatgaactagaaagcgaagaagactacaacatgtattggagacaaacggaatatatggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="-" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="92740" stop="89661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92440" g_stop="91900" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91899" i_stop="90040" i_length="1860">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90039" g_stop="89961" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="620" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="-" ref_id="SGN-E576521" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E576521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92440" e_stop="91900"/>
          <exon e_start="90039" e_stop="89961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATATCTTACTCTCAACCACATTCCTCTAAGTCCCGATACATTGCTTGAAGTTAATGGAACAAGATGTTCCATGTATTCAGAAGGAGCATCTTGTCTCCTTCGAAGGGATAGGGTTGATAAGAAATCCGAAGAAGCTACATTTGTGAGCACGGATAGTATAAGGTTGACAGGAAGTGTGAAATTTGAGGTTTTCAATAAAGATGATCTTGTGCTCTCGGGTTTTTTAGAGATGTCGAATAGTAATGGTTTTGTTGGGGAGTCTAAAAACAGTGGCAAGAGATGGAACATGAATTGTGAATCGGTGATGAATGCTGGCACTGGTTTCCTGAAGGGTAAACAAATTATGGATTCTGAATCATTTTCACCAACAATTGAAGTCTTTATTACTGGTTGCTTCTCCGGGACACCTATCATCTTGACCAAGAGTTTGCAGCTCAATCATCGGAAGAAGCACAACAGGAAGGGTATGTTGCACTCAATCCCGGAGCATGAAACAGATGAGCAGCAGAAAGATGTCTCATCTGAACTTGATCTGCAGGTATAATTGGTAGTTCATCACCTTTTTTTTGAGGTCCATTTGGTATAATATCTAGCATTTTCGAATTCTATAATGCATAGTAAAATGCAAAAACAGCTAATAGGACACATCCGAACAGTCAACATAATTGGATATCCACTGGTATCTTTAAATGTACTGACAAAATCAGTTAACAAACCTCAAAATGCTTGCTATATACTTTTGCATACATTAAGAACCATTAATTTTCGTAAATATTATGAAGATAACCGTTAGTTGCAGTGTTTGGGACAAAAATGATCGCTTTTTGCGTACATTGAGGACCAACAACAACAACATACCCTGTGTAATCCCACAAAGTGGGGTCTAGGGAGGGTAGAGTGTACACAGACTCAACCCCTACCTCAAAGGTAGAGGGGTTGTTTTTGATATACCCTCGGTTCAAGAAGAAAAACAGTTCAAAGCAGTCCAAGAAAAGAAGTAATGCAAGAAACAACAGATAGTAACAATCGCATGTGGCTTTATTCATGCTTCATATCTTTCTTTTTCTTTTTTTTGGATAAAGCTGTTCATGCTTCGTATGATGAAACATGTTTCTGTGTTACATCATACCTAAAGGCCTGTATCTTTTAGAATCTTATCCTAATCAAGTGTCATTGGGTATGGGCTGAGACATACCTTCATATGATTCTTTAATATTAAATTATGTGTCTCCCATGTTGCATTGTTTCAAAGTCTTTAAGATCTTGATTTGTGGGGTCATTATCCTTTTTCTTTATTTGAAGGAATTGGAAATTGCTTTTTACAAAAAAGTTGCACAAAGGAGGTGCTACTATTCAGATTCTTTTTTTAAAAAAAATAACATCTAATTTGAATTGTAGGAAACTAGTAAAGTTTACTAGAATGTCTGAAGTGTTCACATTTTTAAGATCAAACCAAGATGCAATAGAATATAGATTTTTTAGTTTAGCTGTAAGGATAACACGCCGTCTGCAGTTCCACAACACATGTGATAGAATAGTACTCCAGATCTTCCGATTTGTTTGCTTCTGTTTCATTCGTAGCCTGTCTAACTTGTGTGAACCCGAAACAAAATTTCAAAGATAGTGAAAAAAAAATCCCGTGTTAGTAGTACAATATTGAAGTGTCGAGCTGCAAAAGTCCAAGTCCTTAGATTTGTTTTAATTATCCCATGTCTATCTGTTCCTAATAATGTTGTCTGTGCTATGCATAATATCTTGGACATCGATTATCCTATCTGATAAGATTGGAAAAGGAAACAAAAGCCCTCCCCCAATCCTTTAGGATCCTCCTTTTCACGGATCCGAATGAAGTGGTGGTGGTTTGCATTAAATAGAAATATTATCATTTGCTACCTACGAATACTAGCAAACATTTTAAAATGCTATGAAGGATGAGTACTCTATATACTTCCTCCATGAATACTGGCGAAAATTAAACAAATGCTAGAACAGACGACTATTGCTTCCTGATTTTTATGGCATTTGTGATGAATTTTTTCAAAAAAAATAAATTAAGAAATCCGTAGCTTTTCACTTGCTATAACAACCTTGTAAATTTGTTCTTTTCTTTTGTAATGTCTTACGCGTGATAGAGGACTAGTGTAATGTTTCTGTTGACTGTATTGTAGGCCTATTATGCTGCTTTAGTTTTGAAGTTGAAAGATGAAAAAAGGAAAGGATGTTTATGTTTGCCTCACTTTCAGATTTTTAAGTTCCCTTTGTCAATTCTTCGTTCGATTTTCATAGATGGTTGCTGGCTTTTACCATATCTTAATTACTATATATGGGAAAGTGGATCTTTCAATCATAACTAGAACAAGAATTTGCACAGCTTCTGAACTTCATTGTGTGTTCACAGGTTACAGAGTATAGAAAGTATGAACTAGAAAGCGAAGAAGACTACAACATGTATTGGAGACAAACGGAATATATGGATG</genome_strand>
        <mrna_strand>GGAATATCTTACTCTCAACCACATTCCTCTAAGTCCCGATACATTGCTTGAAGTTAATGGAACAAGATGTTCCATGTATTCAGAAGGAGCATCTTGTCTCCTTCGAAGGGATCGGGTTGATAAGAAATCCGAAGAAGCTACATTTGTGAGCACGGATAGTATAAGGTTGACAGGAAGTGTGAAATTTGAGGTTTTCGATAAAGATGATCTTGTGCTCTCGGGGTTTTTAGAGATGTCGAATAGTAATGGTTTTGTTGGGGAGTCTAAAAGCAGTAGCAGGAGATGGAACATGGATTGTGAATCGGTGATGAATGCTGGCACTGGTTTCCTGAAGGGTAAACAAATTATGGATTCTGAATCATTATCACCAACAATTGAAGTTTTTATTACTGCTTGCTTCTCCGGGACGCCTATCATCTTGACCAAGAGTTTGCAGCTCAATCATCGGAAGAAGCACAACAGGAAGGGTATGCTACACTCAATCCCGGAGCATGAAACAGATGAACAGCAGAAAGATGTCTCATCTGAACTTGATCTGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACAGAGTATAGAAAGTATGAACTAGAAAGCGAAGAAGACTACAACATGTATTGGAGACAAACGGAATATATGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E598829" ref_strand="+" ref_description="SGN-E598829 [51803]">
      <seq>agaaaatatagagaggattttcttgggttctttggcctacgtaggtcccaattcatggttcgattatgtccttatatcggtgtctggtgaaggattctgttgaggattaaacatggagaatggtcatgaatcactcagcaatggaaaaccagctgatcctggtctccaaattattaggcacccctcttatcaatcatcttgtggtaaattatcgttatcttggttagatataagagttttctatattagagtcagcaattttatggtagatgattccaccccggaatatcttactctcaaccacattcctctaagtcccgatacattgcttgaagttaatggaacaagatgttccatgtattcagaaggagcatcttgtctccttcgaagggatcgggttgataagaaatccgaagaagctacatttgtgagcacggatagtataaggttgacaggaagtgtgaaatttgaggttttcaataaagatgatcttgtgctctcggggtttttagagatgttgaatagtaatggttttgttggggagtctaaaagcagtggcaggagatggaacatggattgtgaatcggtgatgaatgctggcactggtttcctgaagggtaagcaaattatggattctgaatcattatcaccaacaattgaagtctttattactggttgcttctccgggacacctatcatcttgaccaagagtttgcagctcaatcatcggaagaagcacaacaggaagggtatgttacactcaatccgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="-" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="94298" stop="91652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93998" g_stop="93974" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93973" i_stop="92696" i_length="1278">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.857" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92695" g_stop="91952" g_length="744"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="770" r_length="745" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="-" ref_id="SGN-E598829" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E598829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93998" e_stop="93974"/>
          <exon e_start="92695" e_stop="91952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAAATAGAGAGGATTTTCTTGGTGAGTATATCAAAAGTTGAGAAATTTTTTGGATTTTGTATGTAATTTTCTCTTTCATTTCATGGGTAAAAGGTGAGTTTTTTTTTGGGTTGTGGGTGGTGGGTTGGTGGGGAGTGGTGGAAGGGGTTTAGTTTGGATGCTTATGGGATGTGTGTAAATTGTATGTTGCTAGCAATTTGTTGGTATCTTTCTGGTTTTGGTGTATTTGCTTGGATTTTTGAGCCAGTTTAGTTCTTGATTTTGAGATTGAAATGTGGTAAAGATTGCAACTTTGGATTGTTTTTTTGATTTGTCATCTGAAACTACTGGTGGGGTTGTGTTTCTTTTCAAGAATCTTTGATTTTGAGATTGAAATGTGGTAAAGATTGCAACTTTGGATTGTTTTTTTGATTTGTCATCTGAAATTACTGGTGGGGTTGTGTTTCTTTTCAAGAATCTTTGATTTTATGAGATTGAAATGTGGTAAAGATTGCAACTTTGGATTGTTTTTTTGATTTGTCATCTGAAATTACTGGTGGGGTTGTGTTTCTTTTCAAGAATCTTTGATTTATGAGATTGAAATGTGGTAAAGATTGCAACTTTGGATTGTTTTTTTGATTTGTCATCTGAAATTACTGGTGGGGTTGTGTTTATCTTGAAGAATCATTGATTTCTGCTGCTAATTTTGCAAGATTTTCTTTTTATTCAGTTTTGATGTCATTTCTTAGTTTAGCTAATTTTGATGAAATGAAGAAAAGATTTCAACTTTGGATTGTTTTTTTGATTTGTCATCTAAATAACTGGTGGGGTTGTGTTTAATTTCAAGAATCTTTGATTTTCTGCTGCTAATTCATAGCTTTGTTTGCAAGATTCTATTTTTATCCAATTTTGATGCCACTTTTTTGTTTAGCTAACTTGTGTTACCAAGTCTCATATGAAGTGTTTTTTCAATGACCTCTTCTATTTTATTTTATTTTTGGTCTTTCTAGCCGTTAAGGCATAATTATCTCAACTAAAGTTTGGTTTTTCTTAGCAGCCTAGTCATAATTTTGCTTGGTTAAAAATATAATTGATCCTATAAGAAAGTATGTAACTAAATTTGGATCCCTTGTTTTTGATAATTTAATTTAATTGTATGCCCAAATTCTGTTCCTAAAATCTTGGTCTGTTTGTTTTCTGGAACCTTTATATTGTGTGTGTTTATGTGGAATAAAATCTCTCTTTCTGCATTTCCATTGTTGTTCTCTCCATGTTTTGCCAGTATGATTCTCTGATCAGAGATGTTTGATAATGGAACAGGGTTCTTTGGCCTACGTAGGTCCCGATTCATGGTTCGATTATGTCC-T-TATCGGTGTCTGGTGAAGGATTCTGTTGAGGATTAAACATGGAGAATGGTCATGAATTACTCAGCAATGGAAAACCAGCTGATCCTGGTCTCCAAATTATTAGGCACCCCTCTTACCAATCATCTTGTGGTAAATTATTGTTATCCTGGTTAGATATAAGAGTTTTCTATATTAGAGTCAGCAATTTTATGGTAGATGATTCCACCCCGGAATATCTTACTCTCAACCACATTCCTCTAAGTCCCGATACATTGCTTGAAGTTAATGGAACAAGATGTTCCATGTATTCAGAAGGAGCATCTTGTCTCCTTCGAAGGGATAGGGTTGATAAGAAATCCGAAGAAGCTACATTTGTGAGCACGGATAGTATAAGGTTGACAGGAAGTGTGAAATTTGAGGTTTTCAATAAAGATGATCTTGTGCTCTCGGGTTTTTTAGAGATGTCGAATAGTAATGGTTTTGTTGGGGAGTCTAAAAACAGTGGCAAGAGATGGAACATGAATTGTGAATCGGTGATGAATGCTGGCACTGGTTTCCTGAAGGGTAAACAAATTATGGATTCTGAATCATTTTCACCAACAATTGAAGTCTTTATTACTGGTTGCTTCTCCGGGACACCTATCATCTTGACCAAGAGTTTGCAGCTCAATCATCGGAAGAAGCACAACAGGAAGGGTATGTTGCACTCAATCCCGGA</genome_strand>
        <mrna_strand>AGAAAATATAGAGAGGATTTTCTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCTTTGGCCTACGTAGGTCCCAATTCATGGTTCGATTATGTCCTTATATCGGTGTCTGGTGAAGGATTCTGTTGAGGATTAAACATGGAGAATGGTCATGAATCACTCAGCAATGGAAAACCAGCTGATCCTGGTCTCCAAATTATTAGGCACCCCTCTTATCAATCATCTTGTGGTAAATTATCGTTATCTTGGTTAGATATAAGAGTTTTCTATATTAGAGTCAGCAATTTTATGGTAGATGATTCCACCCCGGAATATCTTACTCTCAACCACATTCCTCTAAGTCCCGATACATTGCTTGAAGTTAATGGAACAAGATGTTCCATGTATTCAGAAGGAGCATCTTGTCTCCTTCGAAGGGATCGGGTTGATAAGAAATCCGAAGAAGCTACATTTGTGAGCACGGATAGTATAAGGTTGACAGGAAGTGTGAAATTTGAGGTTTTCAATAAAGATGATCTTGTGCTCTCGGGGTTTTTAGAGATGTTGAATAGTAATGGTTTTGTTGGGGAGTCTAAAAGCAGTGGCAGGAGATGGAACATGGATTGTGAATCGGTGATGAATGCTGGCACTGGTTTCCTGAAGGGTAAGCAAATTATGGATTCTGAATCATTATCACCAACAATTGAAGTCTTTATTACTGGTTGCTTCTCCGGGACACCTATCATCTTGACCAAGAGTTTGCAGCTCAATCATCGGAAGAAGCACAACAGGAAGGGTATGTTACACTCAAT-CCGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E547706" ref_strand="+" ref_description="SGN-E547706 [TUS-71-L15]">
      <seq>gaacagggttctttggcctacgtaggtcccgattcatggttcgattatgtccttatatcggtgtctggtgaaggattctgttgaggattaaacatggagaatggtcatgaatcactcagcaatggaaaaccagctgatcctggtctccaaattattaggcacccctcttaccaatcatcttgtggtaaattattgttatcttggttagatataagagttttctatattagagtcagcaattttatggtagatgattccaccccggaatatcttactctcaaccacattcctctaagtcccgatacattgcttgaagttaatggatcaagatgttccatgtattcagaaggagcatcttgtctccttcgaagggatagggttgataagaaatccgaagaagctacatttgtgagcacggatagtataaggttgacaggaagtgtgaaatttgaggttttcaataaagatgatcttgtgctctccgggtttttagagatgtcgaatagtaatggttttgttggggagtctaaaaacagtggcaagagatggaacatgaattgtgaatcggtgatgaatgctggcactggtttcctgaagggtaaacaaattatggattctgaatcattatcaccaacaattgaagtctttattactggttgcttctccgggacacctatcatcttgaccaagaatttgcagctcaatcatcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="-" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="93001" stop="91693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92701" g_stop="91993" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="711" r_length="711" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="-" ref_id="SGN-E547706" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92701" e_stop="91993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAGGGTTCTTTGGCCTACGTAGGTCCCGATTCATGGTTCGATTATGTCC-T-TATCGGTGTCTGGTGAAGGATTCTGTTGAGGATTAAACATGGAGAATGGTCATGAATTACTCAGCAATGGAAAACCAGCTGATCCTGGTCTCCAAATTATTAGGCACCCCTCTTACCAATCATCTTGTGGTAAATTATTGTTATCCTGGTTAGATATAAGAGTTTTCTATATTAGAGTCAGCAATTTTATGGTAGATGATTCCACCCCGGAATATCTTACTCTCAACCACATTCCTCTAAGTCCCGATACATTGCTTGAAGTTAATGGAACAAGATGTTCCATGTATTCAGAAGGAGCATCTTGTCTCCTTCGAAGGGATAGGGTTGATAAGAAATCCGAAGAAGCTACATTTGTGAGCACGGATAGTATAAGGTTGACAGGAAGTGTGAAATTTGAGGTTTTCAATAAAGATGATCTTGTGCTCTCGGGTTTTTTAGAGATGTCGAATAGTAATGGTTTTGTTGGGGAGTCTAAAAACAGTGGCAAGAGATGGAACATGAATTGTGAATCGGTGATGAATGCTGGCACTGGTTTCCTGAAGGGTAAACAAATTATGGATTCTGAATCATTTTCACCAACAATTGAAGTCTTTATTACTGGTTGCTTCTCCGGGACACCTATCATCTTGACCAAGAGTTTGCAGCTCAATCATCGG</genome_strand>
        <mrna_strand>GAACAGGGTTCTTTGGCCTACGTAGGTCCCGATTCATGGTTCGATTATGTCCTTATATCGGTGTCTGGTGAAGGATTCTGTTGAGGATTAAACATGGAGAATGGTCATGAATCACTCAGCAATGGAAAACCAGCTGATCCTGGTCTCCAAATTATTAGGCACCCCTCTTACCAATCATCTTGTGGTAAATTATTGTTATCTTGGTTAGATATAAGAGTTTTCTATATTAGAGTCAGCAATTTTATGGTAGATGATTCCACCCCGGAATATCTTACTCTCAACCACATTCCTCTAAGTCCCGATACATTGCTTGAAGTTAATGGATCAAGATGTTCCATGTATTCAGAAGGAGCATCTTGTCTCCTTCGAAGGGATAGGGTTGATAAGAAATCCGAAGAAGCTACATTTGTGAGCACGGATAGTATAAGGTTGACAGGAAGTGTGAAATTTGAGGTTTTCAATAAAGATGATCTTGTGCTCTCCGGGTTTTTAGAGATGTCGAATAGTAATGGTTTTGTTGGGGAGTCTAAAAACAGTGGCAAGAGATGGAACATGAATTGTGAATCGGTGATGAATGCTGGCACTGGTTTCCTGAAGGGTAAACAAATTATGGATTCTGAATCATTATCACCAACAATTGAAGTCTTTATTACTGGTTGCTTCTCCGGGACACCTATCATCTTGACCAAGAATTTGCAGCTCAATCATCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E363595" ref_strand="+" ref_description="SGN-E363595 [cLPP-3-C24]">
      <seq>ttctctccatgttttgcctgtatgattctctgatcagagatgtttgataatggaacagggttctttggcctacgtaggtcccgattcatggttcgattatgtccttatatcggtgtctggtgaaggattctgttgaggattaaacatggagaatggtcatgaatcactcagcaatggaaaaccagctgatcctggtctccaaattattaggcacccctcttaccaatcatcttgtggtaaattattgttatcttggttagatataagagttttctatattagagtcagcaattttatggtagatgattccaccccggaatatcttactctcaaccacattcctctaagtcccgatacattgcttgaagttaatggatcaagatgttccatgtattcagaaggagcatcttgtctccttcgaagggatagggttgataagaaatccgaagaagctacatttgtgagcacggatagtataaggttgacaggaagtgtgaaatttgaggttttcaataaagatgatcttgtgctctccgggtttttagagatgtcgaatagtaatggttttgttggggagtctaaaaacagtggcaagagatggaacatgaattgtgaatcggtgatgaatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="-" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="93053" stop="91825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92753" g_stop="92125" g_length="629"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="631" r_length="631" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="-" ref_id="SGN-E363595" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92753" e_stop="92125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCCATGTTTTGCCAGTATGATTCTCTGATCAGAGATGTTTGATAATGGAACAGGGTTCTTTGGCCTACGTAGGTCCCGATTCATGGTTCGATTATGTCC-T-TATCGGTGTCTGGTGAAGGATTCTGTTGAGGATTAAACATGGAGAATGGTCATGAATTACTCAGCAATGGAAAACCAGCTGATCCTGGTCTCCAAATTATTAGGCACCCCTCTTACCAATCATCTTGTGGTAAATTATTGTTATCCTGGTTAGATATAAGAGTTTTCTATATTAGAGTCAGCAATTTTATGGTAGATGATTCCACCCCGGAATATCTTACTCTCAACCACATTCCTCTAAGTCCCGATACATTGCTTGAAGTTAATGGAACAAGATGTTCCATGTATTCAGAAGGAGCATCTTGTCTCCTTCGAAGGGATAGGGTTGATAAGAAATCCGAAGAAGCTACATTTGTGAGCACGGATAGTATAAGGTTGACAGGAAGTGTGAAATTTGAGGTTTTCAATAAAGATGATCTTGTGCTCTCGGGTTTTTTAGAGATGTCGAATAGTAATGGTTTTGTTGGGGAGTCTAAAAACAGTGGCAAGAGATGGAACATGAATTGTGAATCGGTGATGAATGCT</genome_strand>
        <mrna_strand>TTCTCTCCATGTTTTGCCTGTATGATTCTCTGATCAGAGATGTTTGATAATGGAACAGGGTTCTTTGGCCTACGTAGGTCCCGATTCATGGTTCGATTATGTCCTTATATCGGTGTCTGGTGAAGGATTCTGTTGAGGATTAAACATGGAGAATGGTCATGAATCACTCAGCAATGGAAAACCAGCTGATCCTGGTCTCCAAATTATTAGGCACCCCTCTTACCAATCATCTTGTGGTAAATTATTGTTATCTTGGTTAGATATAAGAGTTTTCTATATTAGAGTCAGCAATTTTATGGTAGATGATTCCACCCCGGAATATCTTACTCTCAACCACATTCCTCTAAGTCCCGATACATTGCTTGAAGTTAATGGATCAAGATGTTCCATGTATTCAGAAGGAGCATCTTGTCTCCTTCGAAGGGATAGGGTTGATAAGAAATCCGAAGAAGCTACATTTGTGAGCACGGATAGTATAAGGTTGACAGGAAGTGTGAAATTTGAGGTTTTCAATAAAGATGATCTTGTGCTCTCCGGGTTTTTAGAGATGTCGAATAGTAATGGTTTTGTTGGGGAGTCTAAAAACAGTGGCAAGAGATGGAACATGAATTGTGAATCGGTGATGAATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731246" ref_strand="+" ref_description="SGN-E731246 [LA26CC10]">
      <seq>ggaaaaggcatattttgatggtaaaattgaagaagattccaaaaagagtagcatcactgtatattgattatattttagctaaccaaacagtttggtggaagttgatgagaaaaaacacttcttttttgggaagtcgaaagtgatttaaaagatctttggatgcttgtatagaagtagaaaaaatagagaggattttcttgggttctttggcctacgtaggtcccgattcatggttcgattatgtccttatcggtgtctggtgaaggattctgttgaggattaaacatggagaatggtcatgaattactcagcaatggaaaaccagctgatcctggtctccaaattattaggcacccctcttaccaatcatcttgtggtaaattattgttatcctggttagatataagagttttctatattagagtcagcaattttatggtagatgattccaccccggaatatcttactctcaaccacattcctctaagtcccgatacattgcttgaagttaatggaacaagatgttccatgtattcagaaggagcatcttgtctccttcgaagggatagggttgataagaaatccgaagaagctacatttgtgagcacggatagtataaggttgacaggaagtgtgaaatttgaggttttcaataaagatgatcttgtgctctcgggttttttagagatgtcgaatagtaatggttttgttggggagtctaaaaacagtggccagagatggaacatgaattgtgaatcggtgatgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="-" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="94473" stop="91827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94173" g_stop="93974" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93973" i_stop="92696" i_length="1278">
            <donor d_prob="0.816" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92695" g_stop="92127" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="769" r_length="569" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="-" ref_id="SGN-E731246" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94173" e_stop="93974"/>
          <exon e_start="92695" e_stop="92127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAGGCATATTTTGATGGTAAAATTGAAGAAGATTCCAAAAAGAGTAGCATCACTGTATATTGATTATATTTTAGCTAACCAAACAGTTTGGTGGAAGTTGATGAGAAAAAACACTTCTTTTTTGGGAAGTCGAAAGTGATTTAAAAGATCTTTGGATGCTTGTATAGAAGTAGAAAAAATAGAGAGGATTTTCTTGGTGAGTATATCAAAAGTTGAGAAATTTTTTGGATTTTGTATGTAATTTTCTCTTTCATTTCATGGGTAAAAGGTGAGTTTTTTTTTGGGTTGTGGGTGGTGGGTTGGTGGGGAGTGGTGGAAGGGGTTTAGTTTGGATGCTTATGGGATGTGTGTAAATTGTATGTTGCTAGCAATTTGTTGGTATCTTTCTGGTTTTGGTGTATTTGCTTGGATTTTTGAGCCAGTTTAGTTCTTGATTTTGAGATTGAAATGTGGTAAAGATTGCAACTTTGGATTGTTTTTTTGATTTGTCATCTGAAACTACTGGTGGGGTTGTGTTTCTTTTCAAGAATCTTTGATTTTGAGATTGAAATGTGGTAAAGATTGCAACTTTGGATTGTTTTTTTGATTTGTCATCTGAAATTACTGGTGGGGTTGTGTTTCTTTTCAAGAATCTTTGATTTTATGAGATTGAAATGTGGTAAAGATTGCAACTTTGGATTGTTTTTTTGATTTGTCATCTGAAATTACTGGTGGGGTTGTGTTTCTTTTCAAGAATCTTTGATTTATGAGATTGAAATGTGGTAAAGATTGCAACTTTGGATTGTTTTTTTGATTTGTCATCTGAAATTACTGGTGGGGTTGTGTTTATCTTGAAGAATCATTGATTTCTGCTGCTAATTTTGCAAGATTTTCTTTTTATTCAGTTTTGATGTCATTTCTTAGTTTAGCTAATTTTGATGAAATGAAGAAAAGATTTCAACTTTGGATTGTTTTTTTGATTTGTCATCTAAATAACTGGTGGGGTTGTGTTTAATTTCAAGAATCTTTGATTTTCTGCTGCTAATTCATAGCTTTGTTTGCAAGATTCTATTTTTATCCAATTTTGATGCCACTTTTTTGTTTAGCTAACTTGTGTTACCAAGTCTCATATGAAGTGTTTTTTCAATGACCTCTTCTATTTTATTTTATTTTTGGTCTTTCTAGCCGTTAAGGCATAATTATCTCAACTAAAGTTTGGTTTTTCTTAGCAGCCTAGTCATAATTTTGCTTGGTTAAAAATATAATTGATCCTATAAGAAAGTATGTAACTAAATTTGGATCCCTTGTTTTTGATAATTTAATTTAATTGTATGCCCAAATTCTGTTCCTAAAATCTTGGTCTGTTTGTTTTCTGGAACCTTTATATTGTGTGTGTTTATGTGGAATAAAATCTCTCTTTCTGCATTTCCATTGTTGTTCTCTCCATGTTTTGCCAGTATGATTCTCTGATCAGAGATGTTTGATAATGGAACAGGGTTCTTTGGCCTACGTAGGTCCCGATTCATGGTTCGATTATGTCCTTATCGGTGTCTGGTGAAGGATTCTGTTGAGGATTAAACATGGAGAATGGTCATGAATTACTCAGCAATGGAAAACCAGCTGATCCTGGTCTCCAAATTATTAGGCACCCCTCTTACCAATCATCTTGTGGTAAATTATTGTTATCCTGGTTAGATATAAGAGTTTTCTATATTAGAGTCAGCAATTTTATGGTAGATGATTCCACCCCGGAATATCTTACTCTCAACCACATTCCTCTAAGTCCCGATACATTGCTTGAAGTTAATGGAACAAGATGTTCCATGTATTCAGAAGGAGCATCTTGTCTCCTTCGAAGGGATAGGGTTGATAAGAAATCCGAAGAAGCTACATTTGTGAGCACGGATAGTATAAGGTTGACAGGAAGTGTGAAATTTGAGGTTTTCAATAAAGATGATCTTGTGCTCTCGGGTTTTTTAGAGATGTCGAATAGTAATGGTTTTGTTGGGGAGTCTAAAAACAGTGGCAAGAGATGGAACATGAATTGTGAATCGGTGATGAATG</genome_strand>
        <mrna_strand>GGAAAAGGCATATTTTGATGGTAAAATTGAAGAAGATTCCAAAAAGAGTAGCATCACTGTATATTGATTATATTTTAGCTAACCAAACAGTTTGGTGGAAGTTGATGAGAAAAAACACTTCTTTTTTGGGAAGTCGAAAGTGATTTAAAAGATCTTTGGATGCTTGTATAGAAGTAGAAAAAATAGAGAGGATTTTCTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCTTTGGCCTACGTAGGTCCCGATTCATGGTTCGATTATGTCCTTATCGGTGTCTGGTGAAGGATTCTGTTGAGGATTAAACATGGAGAATGGTCATGAATTACTCAGCAATGGAAAACCAGCTGATCCTGGTCTCCAAATTATTAGGCACCCCTCTTACCAATCATCTTGTGGTAAATTATTGTTATCCTGGTTAGATATAAGAGTTTTCTATATTAGAGTCAGCAATTTTATGGTAGATGATTCCACCCCGGAATATCTTACTCTCAACCACATTCCTCTAAGTCCCGATACATTGCTTGAAGTTAATGGAACAAGATGTTCCATGTATTCAGAAGGAGCATCTTGTCTCCTTCGAAGGGATAGGGTTGATAAGAAATCCGAAGAAGCTACATTTGTGAGCACGGATAGTATAAGGTTGACAGGAAGTGTGAAATTTGAGGTTTTCAATAAAGATGATCTTGTGCTCTCGGGTTTTTTAGAGATGTCGAATAGTAATGGTTTTGTTGGGGAGTCTAAAAACAGTGGCCAGAGATGGAACATGAATTGTGAATCGGTGATGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274370" ref_strand="+" ref_description="SGN-E274370 [cLEN-19-C19]">
      <seq>ttttcttggtgtgtatatcaaaagttgagaaattttttggattttgtatgtaattttctctttcatttcatgggtaaaagggttctttggcctacgtaggtcccgattcatggttcgattatgtccttatcggtgtctggtgaaggattctgttgaggattaaacatggagaatggtcatgaattactcagcaatggaaaaccagctgatcctggtctccaaattattaggcacccctcttaccaatcatcttgtggtaaattattgttatcctggttagatataagagttttctatattagagtcagcaattttatggtagatgattccaccccggaatatcttactctcaaccacattcctctaagtcccgatacattgcttgaagttaatggaacaagatgttccatgtattcagaaggagcatcttgtctccttcgaagggatagggttgataagaaatccgaagaagctacatttgtgagcacggatagtataaggttgacaggaagtgtgaaatttgaggttttcaataaagatgatcttgtgctctcgggttttttagagatgtcgaatagtaatggttttgttggggagtctaaaaacagtggcaagagatggaacatgaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="-" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="94281" stop="91845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93981" g_stop="93902" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93901" i_stop="92696" i_length="1206">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92695" g_stop="92145" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="631" r_length="551" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="-" ref_id="SGN-E274370" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93981" e_stop="93902"/>
          <exon e_start="92695" e_stop="92145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTGGTGAGTATATCAAAAGTTGAGAAATTTTTTGGATTTTGTATGTAATTTTCTCTTTCATTTCATGGGTAAAAGGTGAGTTTTTTTTTGGGTTGTGGGTGGTGGGTTGGTGGGGAGTGGTGGAAGGGGTTTAGTTTGGATGCTTATGGGATGTGTGTAAATTGTATGTTGCTAGCAATTTGTTGGTATCTTTCTGGTTTTGGTGTATTTGCTTGGATTTTTGAGCCAGTTTAGTTCTTGATTTTGAGATTGAAATGTGGTAAAGATTGCAACTTTGGATTGTTTTTTTGATTTGTCATCTGAAACTACTGGTGGGGTTGTGTTTCTTTTCAAGAATCTTTGATTTTGAGATTGAAATGTGGTAAAGATTGCAACTTTGGATTGTTTTTTTGATTTGTCATCTGAAATTACTGGTGGGGTTGTGTTTCTTTTCAAGAATCTTTGATTTTATGAGATTGAAATGTGGTAAAGATTGCAACTTTGGATTGTTTTTTTGATTTGTCATCTGAAATTACTGGTGGGGTTGTGTTTCTTTTCAAGAATCTTTGATTTATGAGATTGAAATGTGGTAAAGATTGCAACTTTGGATTGTTTTTTTGATTTGTCATCTGAAATTACTGGTGGGGTTGTGTTTATCTTGAAGAATCATTGATTTCTGCTGCTAATTTTGCAAGATTTTCTTTTTATTCAGTTTTGATGTCATTTCTTAGTTTAGCTAATTTTGATGAAATGAAGAAAAGATTTCAACTTTGGATTGTTTTTTTGATTTGTCATCTAAATAACTGGTGGGGTTGTGTTTAATTTCAAGAATCTTTGATTTTCTGCTGCTAATTCATAGCTTTGTTTGCAAGATTCTATTTTTATCCAATTTTGATGCCACTTTTTTGTTTAGCTAACTTGTGTTACCAAGTCTCATATGAAGTGTTTTTTCAATGACCTCTTCTATTTTATTTTATTTTTGGTCTTTCTAGCCGTTAAGGCATAATTATCTCAACTAAAGTTTGGTTTTTCTTAGCAGCCTAGTCATAATTTTGCTTGGTTAAAAATATAATTGATCCTATAAGAAAGTATGTAACTAAATTTGGATCCCTTGTTTTTGATAATTTAATTTAATTGTATGCCCAAATTCTGTTCCTAAAATCTTGGTCTGTTTGTTTTCTGGAACCTTTATATTGTGTGTGTTTATGTGGAATAAAATCTCTCTTTCTGCATTTCCATTGTTGTTCTCTCCATGTTTTGCCAGTATGATTCTCTGATCAGAGATGTTTGATAATGGAACAGGGTTCTTTGGCCTACGTAGGTCCCGATTCATGGTTCGATTATGTCCTTATCGGTGTCTGGTGAAGGATTCTGTTGAGGATTAAACATGGAGAATGGTCATGAATTACTCAGCAATGGAAAACCAGCTGATCCTGGTCTCCAAATTATTAGGCACCCCTCTTACCAATCATCTTGTGGTAAATTATTGTTATCCTGGTTAGATATAAGAGTTTTCTATATTAGAGTCAGCAATTTTATGGTAGATGATTCCACCCCGGAATATCTTACTCTCAACCACATTCCTCTAAGTCCCGATACATTGCTTGAAGTTAATGGAACAAGATGTTCCATGTATTCAGAAGGAGCATCTTGTCTCCTTCGAAGGGATAGGGTTGATAAGAAATCCGAAGAAGCTACATTTGTGAGCACGGATAGTATAAGGTTGACAGGAAGTGTGAAATTTGAGGTTTTCAATAAAGATGATCTTGTGCTCTCGGGTTTTTTAGAGATGTCGAATAGTAATGGTTTTGTTGGGGAGTCTAAAAACAGTGGCAAGAGATGGAACATGAATT</genome_strand>
        <mrna_strand>TTTTCTTGGTGTGTATATCAAAAGTTGAGAAATTTTTTGGATTTTGTATGTAATTTTCTCTTTCATTTCATGGGTAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCTTTGGCCTACGTAGGTCCCGATTCATGGTTCGATTATGTCCTTATCGGTGTCTGGTGAAGGATTCTGTTGAGGATTAAACATGGAGAATGGTCATGAATTACTCAGCAATGGAAAACCAGCTGATCCTGGTCTCCAAATTATTAGGCACCCCTCTTACCAATCATCTTGTGGTAAATTATTGTTATCCTGGTTAGATATAAGAGTTTTCTATATTAGAGTCAGCAATTTTATGGTAGATGATTCCACCCCGGAATATCTTACTCTCAACCACATTCCTCTAAGTCCCGATACATTGCTTGAAGTTAATGGAACAAGATGTTCCATGTATTCAGAAGGAGCATCTTGTCTCCTTCGAAGGGATAGGGTTGATAAGAAATCCGAAGAAGCTACATTTGTGAGCACGGATAGTATAAGGTTGACAGGAAGTGTGAAATTTGAGGTTTTCAATAAAGATGATCTTGTGCTCTCGGGTTTTTTAGAGATGTCGAATAGTAATGGTTTTGTTGGGGAGTCTAAAAACAGTGGCAAGAGATGGAACATGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366627" ref_strand="+" ref_description="SGN-E366627 [cLPT-17-C23]">
      <seq>gaaagtgatttaaaagatctgttgatgcttgtatagaagtagaaaaaatagagagaattttcttgggttctttggcctacgtaggtcccgattcatggttcgattatgtccttatatcggtgtctggtgaaggattctgttgaggattaaacatggagaatggtcatgaatcactcagcaatggaaaaccagctgatcctggtctccaaattattaggcacccctcttaccaatcatcttgtggtaaattattgttatcttggttagatataagagttttctatattagagtcagcaattttatggtagatgattccaccccggaatatcttactctcaaccacattcctctaagtcccgatacattgcttgaagttaatggatcaagatgttccatgtattcagaaggagcatcttgtctccttcgaagggatagggttgataagaaatccgaagaagctacatttgtgagcacggatagtataaggttgacaggaagtgtgaaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="-" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="94338" stop="91953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94038" g_stop="93974" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93973" i_stop="92696" i_length="1278">
            <donor d_prob="0.816" d_score="0.94"/>
            <acceptor a_prob="0.857" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92695" g_stop="92253" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="510" r_length="445" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="-" ref_id="SGN-E366627" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94038" e_stop="93974"/>
          <exon e_start="92695" e_stop="92253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGTGATTTAAAAGATCTTTGGATGCTTGTATAGAAGTAGAAAAAATAGAGAGGATTTTCTTGGTGAGTATATCAAAAGTTGAGAAATTTTTTGGATTTTGTATGTAATTTTCTCTTTCATTTCATGGGTAAAAGGTGAGTTTTTTTTTGGGTTGTGGGTGGTGGGTTGGTGGGGAGTGGTGGAAGGGGTTTAGTTTGGATGCTTATGGGATGTGTGTAAATTGTATGTTGCTAGCAATTTGTTGGTATCTTTCTGGTTTTGGTGTATTTGCTTGGATTTTTGAGCCAGTTTAGTTCTTGATTTTGAGATTGAAATGTGGTAAAGATTGCAACTTTGGATTGTTTTTTTGATTTGTCATCTGAAACTACTGGTGGGGTTGTGTTTCTTTTCAAGAATCTTTGATTTTGAGATTGAAATGTGGTAAAGATTGCAACTTTGGATTGTTTTTTTGATTTGTCATCTGAAATTACTGGTGGGGTTGTGTTTCTTTTCAAGAATCTTTGATTTTATGAGATTGAAATGTGGTAAAGATTGCAACTTTGGATTGTTTTTTTGATTTGTCATCTGAAATTACTGGTGGGGTTGTGTTTCTTTTCAAGAATCTTTGATTTATGAGATTGAAATGTGGTAAAGATTGCAACTTTGGATTGTTTTTTTGATTTGTCATCTGAAATTACTGGTGGGGTTGTGTTTATCTTGAAGAATCATTGATTTCTGCTGCTAATTTTGCAAGATTTTCTTTTTATTCAGTTTTGATGTCATTTCTTAGTTTAGCTAATTTTGATGAAATGAAGAAAAGATTTCAACTTTGGATTGTTTTTTTGATTTGTCATCTAAATAACTGGTGGGGTTGTGTTTAATTTCAAGAATCTTTGATTTTCTGCTGCTAATTCATAGCTTTGTTTGCAAGATTCTATTTTTATCCAATTTTGATGCCACTTTTTTGTTTAGCTAACTTGTGTTACCAAGTCTCATATGAAGTGTTTTTTCAATGACCTCTTCTATTTTATTTTATTTTTGGTCTTTCTAGCCGTTAAGGCATAATTATCTCAACTAAAGTTTGGTTTTTCTTAGCAGCCTAGTCATAATTTTGCTTGGTTAAAAATATAATTGATCCTATAAGAAAGTATGTAACTAAATTTGGATCCCTTGTTTTTGATAATTTAATTTAATTGTATGCCCAAATTCTGTTCCTAAAATCTTGGTCTGTTTGTTTTCTGGAACCTTTATATTGTGTGTGTTTATGTGGAATAAAATCTCTCTTTCTGCATTTCCATTGTTGTTCTCTCCATGTTTTGCCAGTATGATTCTCTGATCAGAGATGTTTGATAATGGAACAGGGTTCTTTGGCCTACGTAGGTCCCGATTCATGGTTCGATTATGTCC-T-TATCGGTGTCTGGTGAAGGATTCTGTTGAGGATTAAACATGGAGAATGGTCATGAATTACTCAGCAATGGAAAACCAGCTGATCCTGGTCTCCAAATTATTAGGCACCCCTCTTACCAATCATCTTGTGGTAAATTATTGTTATCCTGGTTAGATATAAGAGTTTTCTATATTAGAGTCAGCAATTTTATGGTAGATGATTCCACCCCGGAATATCTTACTCTCAACCACATTCCTCTAAGTCCCGATACATTGCTTGAAGTTAATGGAACAAGATGTTCCATGTATTCAGAAGGAGCATCTTGTCTCCTTCGAAGGGATAGGGTTGATAAGAAATCCGAAGAAGCTACATTTGTGAGCACGGATAGTATAAGGTTGACAGGAAGTGTGAAATTTG</genome_strand>
        <mrna_strand>GAAAGTGATTTAAAAGATCTGTTGATGCTTGTATAGAAGTAGAAAAAATAGAGAGAATTTTCTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCTTTGGCCTACGTAGGTCCCGATTCATGGTTCGATTATGTCCTTATATCGGTGTCTGGTGAAGGATTCTGTTGAGGATTAAACATGGAGAATGGTCATGAATCACTCAGCAATGGAAAACCAGCTGATCCTGGTCTCCAAATTATTAGGCACCCCTCTTACCAATCATCTTGTGGTAAATTATTGTTATCTTGGTTAGATATAAGAGTTTTCTATATTAGAGTCAGCAATTTTATGGTAGATGATTCCACCCCGGAATATCTTACTCTCAACCACATTCCTCTAAGTCCCGATACATTGCTTGAAGTTAATGGATCAAGATGTTCCATGTATTCAGAAGGAGCATCTTGTCTCCTTCGAAGGGATAGGGTTGATAAGAAATCCGAAGAAGCTACATTTGTGAGCACGGATAGTATAAGGTTGACAGGAAGTGTGAAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E431588" ref_strand="+" ref_description="SGN-E431588 [STM-55-P21]">
      <seq>cgggccccccctttgctttgatttttgcgccagttcagttcttgattttgagatgaaatatagaaaagatgcaactttggattggatttttgatttgtcatctgaaattactggtcccgattcatggttcgattatgtccttatatcggtgtctggtgaaggattctgttgaggattaaacatggagaatggtcatgaatcactcagcaatggaaaaccagctgatcctggtctccaaattattaggcacccctcttaccaatcatcttgtggtaaattatcgttatcttggttagatataagagttttctatattagagtcagcaattttatggtagatgattccaccccggaatatcttactctcaaccacattcctctaagtcccgatacattgcttgaagttaatggaacaagatgttccatgtattcagaaggagcatcttgtctccttcgaagggatcgggttgataagaaatctgaagaagctacatttgtgagcacggatagtataaggttgacaggaagtgtgaaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="-" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="94069" stop="91953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93769" g_stop="93666" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="113" r_length="102" r_score="0.894"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93665" i_stop="92677" i_length="989">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.824" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92676" g_stop="92253" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="539" r_length="426" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="-" ref_id="SGN-E431588" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E431588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93769" e_stop="93666"/>
          <exon e_start="92676" e_stop="92253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTTGGATTTTTGAGCCAGTTTAGTTCTTGATTTTGAGATTGAAATGTGGTAAAGATTGCAACTTTGGATTGTTTTTTTGATTTGTCATCTGAAACTACTGGTGGGGTTGTGTTTCTTTTCAAGAATCTTTGATTTTGAGATTGAAATGTGGTAAAGATTGCAACTTTGGATTGTTTTTTTGATTTGTCATCTGAAATTACTGGTGGGGTTGTGTTTCTTTTCAAGAATCTTTGATTTTATGAGATTGAAATGTGGTAAAGATTGCAACTTTGGATTGTTTTTTTGATTTGTCATCTGAAATTACTGGTGGGGTTGTGTTTCTTTTCAAGAATCTTTGATTTATGAGATTGAAATGTGGTAAAGATTGCAACTTTGGATTGTTTTTTTGATTTGTCATCTGAAATTACTGGTGGGGTTGTGTTTATCTTGAAGAATCATTGATTTCTGCTGCTAATTTTGCAAGATTTTCTTTTTATTCAGTTTTGATGTCATTTCTTAGTTTAGCTAATTTTGATGAAATGAAGAAAAGATTTCAACTTTGGATTGTTTTTTTGATTTGTCATCTAAATAACTGGTGGGGTTGTGTTTAATTTCAAGAATCTTTGATTTTCTGCTGCTAATTCATAGCTTTGTTTGCAAGATTCTATTTTTATCCAATTTTGATGCCACTTTTTTGTTTAGCTAACTTGTGTTACCAAGTCTCATATGAAGTGTTTTTTCAATGACCTCTTCTATTTTATTTTATTTTTGGTCTTTCTAGCCGTTAAGGCATAATTATCTCAACTAAAGTTTGGTTTTTCTTAGCAGCCTAGTCATAATTTTGCTTGGTTAAAAATATAATTGATCCTATAAGAAAGTATGTAACTAAATTTGGATCCCTTGTTTTTGATAATTTAATTTAATTGTATGCCCAAATTCTGTTCCTAAAATCTTGGTCTGTTTGTTTTCTGGAACCTTTATATTGTGTGTGTTTATGTGGAATAAAATCTCTCTTTCTGCATTTCCATTGTTGTTCTCTCCATGTTTTGCCAGTATGATTCTCTGATCAGAGATGTTTGATAATGGAACAGGGTTCTTTGGCCTACGTAGGTCCCGATTCATGGTTCGATTATGTCC-T-TATCGGTGTCTGGTGAAGGATTCTGTTGAGGATTAAACATGGAGAATGGTCATGAATTACTCAGCAATGGAAAACCAGCTGATCCTGGTCTCCAAATTATTAGGCACCCCTCTTACCAATCATCTTGTGGTAAATTATTGTTATCCTGGTTAGATATAAGAGTTTTCTATATTAGAGTCAGCAATTTTATGGTAGATGATTCCACCCCGGAATATCTTACTCTCAACCACATTCCTCTAAGTCCCGATACATTGCTTGAAGTTAATGGAACAAGATGTTCCATGTATTCAGAAGGAGCATCTTGTCTCCTTCGAAGGGATAGGGTTGATAAGAAATCCGAAGAAGCTACATTTGTGAGCACGGATAGTATAAGGTTGACAGGAAGTGTGAAATTTG</genome_strand>
        <mrna_strand>TTTGCTTTGATTTTTGCGCCAGTTCAGTTCTTGATTTTGAGA-TGAAATATAGAAAAGA-TGCAACTTTGGATTGGATTTTTGATTTGTCATCTGAAATTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCGATTCATGGTTCGATTATGTCCTTATATCGGTGTCTGGTGAAGGATTCTGTTGAGGATTAAACATGGAGAATGGTCATGAATCACTCAGCAATGGAAAACCAGCTGATCCTGGTCTCCAAATTATTAGGCACCCCTCTTACCAATCATCTTGTGGTAAATTATCGTTATCTTGGTTAGATATAAGAGTTTTCTATATTAGAGTCAGCAATTTTATGGTAGATGATTCCACCCCGGAATATCTTACTCTCAACCACATTCCTCTAAGTCCCGATACATTGCTTGAAGTTAATGGAACAAGATGTTCCATGTATTCAGAAGGAGCATCTTGTCTCCTTCGAAGGGATCGGGTTGATAAGAAATCTGAAGAAGCTACATTTGTGAGCACGGATAGTATAAGGTTGACAGGAAGTGTGAAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365212" ref_strand="+" ref_description="SGN-E365212 [cLPP-17-J16]">
      <seq>aacagggttctttggcctacgtaggtcccgattcatggttcgattatgtccttatatcggtgtctggtgaaggattctgttgaggattaaacatggagaatggtcatgaatcactcagcaatggaaaaccagctgatcctggtctccaaattattaggcacccctcttaccaatcatcttgtggtaaatcattgatatcttggttagatataagagttttctatattagagtcagcaattttatggtagatgattccaccccggaatatcttactctcaaccacattcctctaagtcccgatacattgcttgaagttaatggatcaagatgttccatgtattcagaaagagcatcttgtctccttcgaagggatagggttgataag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="-" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="93000" stop="92017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92700" g_stop="92317" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="-" ref_id="SGN-E365212" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92700" e_stop="92317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGGGTTCTTTGGCCTACGTAGGTCCCGATTCATGGTTCGATTATGTCC-T-TATCGGTGTCTGGTGAAGGATTCTGTTGAGGATTAAACATGGAGAATGGTCATGAATTACTCAGCAATGGAAAACCAGCTGATCCTGGTCTCCAAATTATTAGGCACCCCTCTTACCAATCATCTTGTGGTAAATTATTGTTATCCTGGTTAGATATAAGAGTTTTCTATATTAGAGTCAGCAATTTTATGGTAGATGATTCCACCCCGGAATATCTTACTCTCAACCACATTCCTCTAAGTCCCGATACATTGCTTGAAGTTAATGGAACAAGATGTTCCATGTATTCAGAAGGAGCATCTTGTCTCCTTCGAAGGGATAGGGTTGATAAG</genome_strand>
        <mrna_strand>AACAGGGTTCTTTGGCCTACGTAGGTCCCGATTCATGGTTCGATTATGTCCTTATATCGGTGTCTGGTGAAGGATTCTGTTGAGGATTAAACATGGAGAATGGTCATGAATCACTCAGCAATGGAAAACCAGCTGATCCTGGTCTCCAAATTATTAGGCACCCCTCTTACCAATCATCTTGTGGTAAATCATTGATATCTTGGTTAGATATAAGAGTTTTCTATATTAGAGTCAGCAATTTTATGGTAGATGATTCCACCCCGGAATATCTTACTCTCAACCACATTCCTCTAAGTCCCGATACATTGCTTGAAGTTAATGGATCAAGATGTTCCATGTATTCAGAAAGAGCATCTTGTCTCCTTCGAAGGGATAGGGTTGATAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718109" ref_strand="+" ref_description="SGN-E718109 [FC03CH08]">
      <seq>gtttggtggaagttgatgagaaaaaacacttcttttttgggaagtcgaaagtgatttaaaagatctttggatgcttgtatagaagtagaaaaaatagagaggattttcttgggttctttggcctacataggtcccgattcatggttcgattatgtccttatcggtgtctggtgaaggattctgttgaggattaaacatggaaaatggtcatgaattactcaccaatggaaaaccagctgatcctggtctccaaattattaggcacccctcttaccaatcatcttgtggaaaattattgttatcctggttagacataaaagttttctatattaaagtcagcaattttatggtagatgattccaccccggaatatcttactctcaaccacattcctctaagtcccgatacattgcttgaagttaatggaacaagatgttccatgtattcagaaggagcatcttgtctccttcgaagggatagggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="-" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="94384" stop="92024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94084" g_stop="93974" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93973" i_stop="92696" i_length="1278">
            <donor d_prob="0.816" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92695" g_stop="92324" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="483" r_length="372" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="-" ref_id="SGN-E718109" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94084" e_stop="93974"/>
          <exon e_start="92695" e_stop="92324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGTGGAAGTTGATGAGAAAAAACACTTCTTTTTTGGGAAGTCGAAAGTGATTTAAAAGATCTTTGGATGCTTGTATAGAAGTAGAAAAAATAGAGAGGATTTTCTTGGTGAGTATATCAAAAGTTGAGAAATTTTTTGGATTTTGTATGTAATTTTCTCTTTCATTTCATGGGTAAAAGGTGAGTTTTTTTTTGGGTTGTGGGTGGTGGGTTGGTGGGGAGTGGTGGAAGGGGTTTAGTTTGGATGCTTATGGGATGTGTGTAAATTGTATGTTGCTAGCAATTTGTTGGTATCTTTCTGGTTTTGGTGTATTTGCTTGGATTTTTGAGCCAGTTTAGTTCTTGATTTTGAGATTGAAATGTGGTAAAGATTGCAACTTTGGATTGTTTTTTTGATTTGTCATCTGAAACTACTGGTGGGGTTGTGTTTCTTTTCAAGAATCTTTGATTTTGAGATTGAAATGTGGTAAAGATTGCAACTTTGGATTGTTTTTTTGATTTGTCATCTGAAATTACTGGTGGGGTTGTGTTTCTTTTCAAGAATCTTTGATTTTATGAGATTGAAATGTGGTAAAGATTGCAACTTTGGATTGTTTTTTTGATTTGTCATCTGAAATTACTGGTGGGGTTGTGTTTCTTTTCAAGAATCTTTGATTTATGAGATTGAAATGTGGTAAAGATTGCAACTTTGGATTGTTTTTTTGATTTGTCATCTGAAATTACTGGTGGGGTTGTGTTTATCTTGAAGAATCATTGATTTCTGCTGCTAATTTTGCAAGATTTTCTTTTTATTCAGTTTTGATGTCATTTCTTAGTTTAGCTAATTTTGATGAAATGAAGAAAAGATTTCAACTTTGGATTGTTTTTTTGATTTGTCATCTAAATAACTGGTGGGGTTGTGTTTAATTTCAAGAATCTTTGATTTTCTGCTGCTAATTCATAGCTTTGTTTGCAAGATTCTATTTTTATCCAATTTTGATGCCACTTTTTTGTTTAGCTAACTTGTGTTACCAAGTCTCATATGAAGTGTTTTTTCAATGACCTCTTCTATTTTATTTTATTTTTGGTCTTTCTAGCCGTTAAGGCATAATTATCTCAACTAAAGTTTGGTTTTTCTTAGCAGCCTAGTCATAATTTTGCTTGGTTAAAAATATAATTGATCCTATAAGAAAGTATGTAACTAAATTTGGATCCCTTGTTTTTGATAATTTAATTTAATTGTATGCCCAAATTCTGTTCCTAAAATCTTGGTCTGTTTGTTTTCTGGAACCTTTATATTGTGTGTGTTTATGTGGAATAAAATCTCTCTTTCTGCATTTCCATTGTTGTTCTCTCCATGTTTTGCCAGTATGATTCTCTGATCAGAGATGTTTGATAATGGAACAGGGTTCTTTGGCCTACGTAGGTCCCGATTCATGGTTCGATTATGTCCTTATCGGTGTCTGGTGAAGGATTCTGTTGAGGATTAAACATGGAGAATGGTCATGAATTACTCAGCAATGGAAAACCAGCTGATCCTGGTCTCCAAATTATTAGGCACCCCTCTTACCAATCATCTTGTGGTAAATTATTGTTATCCTGGTTAGATATAAGAGTTTTCTATATTAGAGTCAGCAATTTTATGGTAGATGATTCCACCCCGGAATATCTTACTCTCAACCACATTCCTCTAAGTCCCGATACATTGCTTGAAGTTAATGGAACAAGATGTTCCATGTATTCAGAAGGAGCATCTTGTCTCCTTCGAAGGGATAGGGT</genome_strand>
        <mrna_strand>GTTTGGTGGAAGTTGATGAGAAAAAACACTTCTTTTTTGGGAAGTCGAAAGTGATTTAAAAGATCTTTGGATGCTTGTATAGAAGTAGAAAAAATAGAGAGGATTTTCTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCTTTGGCCTACATAGGTCCCGATTCATGGTTCGATTATGTCCTTATCGGTGTCTGGTGAAGGATTCTGTTGAGGATTAAACATGGAAAATGGTCATGAATTACTCACCAATGGAAAACCAGCTGATCCTGGTCTCCAAATTATTAGGCACCCCTCTTACCAATCATCTTGTGGAAAATTATTGTTATCCTGGTTAGACATAAAAGTTTTCTATATTAAAGTCAGCAATTTTATGGTAGATGATTCCACCCCGGAATATCTTACTCTCAACCACATTCCTCTAAGTCCCGATACATTGCTTGAAGTTAATGGAACAAGATGTTCCATGTATTCAGAAGGAGCATCTTGTCTCCTTCGAAGGGATAGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E364064" ref_strand="+" ref_description="SGN-E364064 [cLPP-16-D16]">
      <seq>tttgataatggaacagggttctttggcctacgtaggtcccgattcatggttcgattatgtgcttatatcggtgtctggagaaggattctgttgaggattaaacatggagaatggtcatgaatcactcagcaatggaaaaccaactgatcctggtctccaaattattaggcacccctgttaccaatcatcttgtggtaaattattgttatcttggttagatataagagttttctatattagagtcagcaattttatggtagatgattccaccccggaatatcttactctcaaccacattcctctaagtcccgatacattgcttgaagtttatggatcaagatgttccatgtattcagaaagagcatcttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="-" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="93011" stop="92044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92711" g_stop="92344" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="-" ref_id="SGN-E364064" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92711" e_stop="92344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATAATGGAACAGGGTTCTTTGGCCTACGTAGGTCCCGATTCATGGTTCGATTATGT-CCT-TATCGGTGTCTGGTGAAGGATTCTGTTGAGGATTAAACATGGAGAATGGTCATGAATTACTCAGCAATGGAAAACCAGCTGATCCTGGTCTCCAAATTATTAGGCACCCCTCTTACCAATCATCTTGTGGTAAATTATTGTTATCCTGGTTAGATATAAGAGTTTTCTATATTAGAGTCAGCAATTTTATGGTAGATGATTCCACCCCGGAATATCTTACTCTCAACCACATTCCTCTAAGTCCCGATACATTGCTTGAAGTTAATGGAACAAGATGTTCCATGTATTCAGAAGGAGCATCTTGT</genome_strand>
        <mrna_strand>TTTGATAATGGAACAGGGTTCTTTGGCCTACGTAGGTCCCGATTCATGGTTCGATTATGTGCTTATATCGGTGTCTGGAGAAGGATTCTGTTGAGGATTAAACATGGAGAATGGTCATGAATCACTCAGCAATGGAAAACCAACTGATCCTGGTCTCCAAATTATTAGGCACCCCTGTTACCAATCATCTTGTGGTAAATTATTGTTATCTTGGTTAGATATAAGAGTTTTCTATATTAGAGTCAGCAATTTTATGGTAGATGATTCCACCCCGGAATATCTTACTCTCAACCACATTCCTCTAAGTCCCGATACATTGCTTGAAGTTTATGGATCAAGATGTTCCATGTATTCAGAAAGAGCATCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337977" ref_strand="+" ref_description="SGN-E337977 [cTOE-14-K7]">
      <seq>gtgtctggtgaaggattctgttgaggattaaacatggagaatggtcatgaattactcagcaatggaaaaccagctgatcctggtctccaaattattaggcacccctcttaccaatcatcttgtggtaaattattgttatcctggttagatataagagttttctatattagagtcagcaattttatggtagatgattccaccccggaatatcttactctcaaccacattcctctaagtcccgatacattgcttgaagttaatggaacaagatgttccatgtattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="-" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="92943" stop="92059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92643" g_stop="92359" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="-" ref_id="SGN-E337977" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>285</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92643" e_stop="92359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTCTGGTGAAGGATTCTGTTGAGGATTAAACATGGAGAATGGTCATGAATTACTCAGCAATGGAAAACCAGCTGATCCTGGTCTCCAAATTATTAGGCACCCCTCTTACCAATCATCTTGTGGTAAATTATTGTTATCCTGGTTAGATATAAGAGTTTTCTATATTAGAGTCAGCAATTTTATGGTAGATGATTCCACCCCGGAATATCTTACTCTCAACCACATTCCTCTAAGTCCCGATACATTGCTTGAAGTTAATGGAACAAGATGTTCCATGTATTCA</genome_strand>
        <mrna_strand>GTGTCTGGTGAAGGATTCTGTTGAGGATTAAACATGGAGAATGGTCATGAATTACTCAGCAATGGAAAACCAGCTGATCCTGGTCTCCAAATTATTAGGCACCCCTCTTACCAATCATCTTGTGGTAAATTATTGTTATCCTGGTTAGATATAAGAGTTTTCTATATTAGAGTCAGCAATTTTATGGTAGATGATTCCACCCCGGAATATCTTACTCTCAACCACATTCCTCTAAGTCCCGATACATTGCTTGAAGTTAATGGAACAAGATGTTCCATGTATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360690" ref_strand="+" ref_description="SGN-E360690 [cLPP-7-D14]">
      <seq>ttgttctctccatgttttgcctgtatgattctctgatcagagatgtttgataatggaacagggttctttggcctacgtatgtcccgattcatggttcgattatgtccttatatcggtgtctggtgaaggattctgttgaggattaaacatggagaatggtcatgaatcactcagcaatggaaaaccagctgatcctggtctccaaattattaggcacccctcttaccaatcatcttgtggtaaattattgttatcttggttaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="-" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="93056" stop="92195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92756" g_stop="92495" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="-" ref_id="SGN-E360690" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>262</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92756" e_stop="92495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTCTCTCCATGTTTTGCCAGTATGATTCTCTGATCAGAGATGTTTGATAATGGAACAGGGTTCTTTGGCCTACGTAGGTCCCGATTCATGGTTCGATTATGTCCTTA--TCGGTGTCTGGTGAAGGATTCTGTTGAGGATTAAACATGGAGAATGGTCATGAATTACTCAGCAATGGAAAACCAGCTGATCCTGGTCTCCAAATTATTAGGCACCCCTCTTACCAATCATCTTGTGGTAAATTATTGTTATCCTGGTTAGA</genome_strand>
        <mrna_strand>TTGTTCTCTCCATGTTTTGCCTGTATGATTCTCTGATCAGAGATGTTTGATAATGGAACAGGGTTCTTTGGCCTACGTATGTCCCGATTCATGGTTCGATTATGTCCTTATATCGGTGTCTGGTGAAGGATTCTGTTGAGGATTAAACATGGAGAATGGTCATGAATCACTCAGCAATGGAAAACCAGCTGATCCTGGTCTCCAAATTATTAGGCACCCCTCTTACCAATCATCTTGTGGTAAATTATTGTTATCTTGGTTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343114" ref_strand="+" ref_description="SGN-E343114 [cTOF-17-A22]">
      <seq>gattatattttagctaaccaaacagtttggtggaagttgatgagaaaaaacacttcttttttgggaagtcgaaagtgatttaaaagatctttggatgcttgtatagaagtagaaaaaatagagaggattttcttgggttctttggcctacgtaggtcccgattcatggttcgattatgtccttatcggtgtctggtgaaggattctgttgaggataaacatggagaatggtcatgaattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="-" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="94408" stop="92289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94108" g_stop="93974" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93973" i_stop="92696" i_length="1278">
            <donor d_prob="0.816" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92695" g_stop="92589" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="241" r_length="106" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="-" ref_id="SGN-E343114" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>242</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94108" e_stop="93974"/>
          <exon e_start="92695" e_stop="92589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTATATTTTAGCTAACCAAACAGTTTGGTGGAAGTTGATGAGAAAAAACACTTCTTTTTTGGGAAGTCGAAAGTGATTTAAAAGATCTTTGGATGCTTGTATAGAAGTAGAAAAAATAGAGAGGATTTTCTTGGTGAGTATATCAAAAGTTGAGAAATTTTTTGGATTTTGTATGTAATTTTCTCTTTCATTTCATGGGTAAAAGGTGAGTTTTTTTTTGGGTTGTGGGTGGTGGGTTGGTGGGGAGTGGTGGAAGGGGTTTAGTTTGGATGCTTATGGGATGTGTGTAAATTGTATGTTGCTAGCAATTTGTTGGTATCTTTCTGGTTTTGGTGTATTTGCTTGGATTTTTGAGCCAGTTTAGTTCTTGATTTTGAGATTGAAATGTGGTAAAGATTGCAACTTTGGATTGTTTTTTTGATTTGTCATCTGAAACTACTGGTGGGGTTGTGTTTCTTTTCAAGAATCTTTGATTTTGAGATTGAAATGTGGTAAAGATTGCAACTTTGGATTGTTTTTTTGATTTGTCATCTGAAATTACTGGTGGGGTTGTGTTTCTTTTCAAGAATCTTTGATTTTATGAGATTGAAATGTGGTAAAGATTGCAACTTTGGATTGTTTTTTTGATTTGTCATCTGAAATTACTGGTGGGGTTGTGTTTCTTTTCAAGAATCTTTGATTTATGAGATTGAAATGTGGTAAAGATTGCAACTTTGGATTGTTTTTTTGATTTGTCATCTGAAATTACTGGTGGGGTTGTGTTTATCTTGAAGAATCATTGATTTCTGCTGCTAATTTTGCAAGATTTTCTTTTTATTCAGTTTTGATGTCATTTCTTAGTTTAGCTAATTTTGATGAAATGAAGAAAAGATTTCAACTTTGGATTGTTTTTTTGATTTGTCATCTAAATAACTGGTGGGGTTGTGTTTAATTTCAAGAATCTTTGATTTTCTGCTGCTAATTCATAGCTTTGTTTGCAAGATTCTATTTTTATCCAATTTTGATGCCACTTTTTTGTTTAGCTAACTTGTGTTACCAAGTCTCATATGAAGTGTTTTTTCAATGACCTCTTCTATTTTATTTTATTTTTGGTCTTTCTAGCCGTTAAGGCATAATTATCTCAACTAAAGTTTGGTTTTTCTTAGCAGCCTAGTCATAATTTTGCTTGGTTAAAAATATAATTGATCCTATAAGAAAGTATGTAACTAAATTTGGATCCCTTGTTTTTGATAATTTAATTTAATTGTATGCCCAAATTCTGTTCCTAAAATCTTGGTCTGTTTGTTTTCTGGAACCTTTATATTGTGTGTGTTTATGTGGAATAAAATCTCTCTTTCTGCATTTCCATTGTTGTTCTCTCCATGTTTTGCCAGTATGATTCTCTGATCAGAGATGTTTGATAATGGAACAGGGTTCTTTGGCCTACGTAGGTCCCGATTCATGGTTCGATTATGTCCTTATCGGTGTCTGGTGAAGGATTCTGTTGAGGATTAAACATGGAGAATGGTCATGAATTAC</genome_strand>
        <mrna_strand>GATTATATTTTAGCTAACCAAACAGTTTGGTGGAAGTTGATGAGAAAAAACACTTCTTTTTTGGGAAGTCGAAAGTGATTTAAAAGATCTTTGGATGCTTGTATAGAAGTAGAAAAAATAGAGAGGATTTTCTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCTTTGGCCTACGTAGGTCCCGATTCATGGTTCGATTATGTCCTTATCGGTGTCTGGTGAAGGATTCTGTTGAGGA-TAAACATGGAGAATGGTCATGAATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700747" ref_strand="+" ref_description="SGN-E700747 [FA14AB11]">
      <seq>cagcgacatagcgaagcatcaaaatggatctctgaaactgtagctgagaaaatcagtgatccttcaattgcttacaatctgcgttagcttctccatcttcgtcttgttgcgagttggtgttgaagatgtcttcagctcaagatcctttctatattgtcaaggaggaaattcaagaatctattgacaagctcttgtccacgtttcatcaatgggagcaaacttctgccggaagtagtgagcaagtacatcttaccaaagaacttcttgcttcatctgagagcattgagtggcaggtggatgaattggacaaaacaattgatgttgcagcaagagatccttcttggtatggtattaatgatattgagcttgataagagaagaagatggaccagcaatgcccgtgctcaagtgggaagcatgaagaaagctgtagtagctggaaaacagtcaaatgggacaagtacatctaatctgagtgggatgcggcgagaactgttgagattgccagattctgaacagaaagagagatccaatgcatacaatgcccgagataatgatgacttcatatcatcagaatcagatagacaattacttcttatgaggcaacaggatgaagaactagacgagcttagtgccagcgtagtcagaattggagatgttgggctcaccatacacgatgaacttcttgcacacgagaagatcttaagtgagttggacacggagatggacagtacatcaaatcgtctagatttcattcagaaaaagattggcatggtaatgaagaaggcgagcgtcaagggacagatgatgatgatttgttttctgatagtttaatttattgttctttttgttctggtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="-" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="102301" stop="96588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102001" g_stop="101889" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101888" i_stop="99297" i_length="2592">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99296" g_stop="99231" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="179" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99230" i_stop="98753" i_length="478">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98752" g_stop="98639" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="293" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98638" i_stop="98275" i_length="364">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98274" g_stop="98161" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="407" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98160" i_stop="98071" i_length="90">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98070" g_stop="97877" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="601" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97876" i_stop="97373" i_length="504">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97372" g_stop="97282" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="692" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="97281" i_stop="97168" i_length="114">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="97167" g_stop="97102" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="693" r_stop="758" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="97101" i_stop="96989" i_length="113">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="96988" g_stop="96888" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="759" r_stop="859" r_length="101" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="-" ref_id="SGN-E700747" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>859</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102001" e_stop="101889"/>
          <exon e_start="99296" e_stop="99231"/>
          <exon e_start="98752" e_stop="98639"/>
          <exon e_start="98274" e_stop="98161"/>
          <exon e_start="98070" e_stop="97877"/>
          <exon e_start="97372" e_stop="97282"/>
          <exon e_start="97167" e_stop="97102"/>
          <exon e_start="96988" e_stop="96888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCGACATAGCGAAGCATCAAAATGGATCTCTGAAACTGTAGCTGAGAAAATCAGTGATCCTTCAATTGCTTACAATCTGCGTTAGCTTCTCCATCTTCGTCTTGTTGCGAGGTGAGATAACAAATTATACTTTGCAGCTCTTGATTTTGGTTCGATTTGATTTAGGTATTTTTGTTCTGTGAAATTTAGGCATCAATGTTTCTTAGATTTGCGATTTCACTATGAAATTTGCTGTATTAGGTTCTAATTTTGCTTCAATTTGGATTTTTGTTGATCTGTGGCTTCATCCTGCAATTAAACGAATCATATACTGGCATAATGTGTATCCGATGATGTTTTAGAGTAGAAATCAAAGCTTATTTCTCTCTGAGAGGTTAGTTTGGTAGATCGTCGGGAAACACCTCTGTATTGTATTATTCTCGGGTTTCATGAACTGTATTTGTAGTGTAGAGTACAAAAAAACCTGACTGATCATCCTGTGCACCTTCGTGAAAGATATGATTTTTATCATGTGTTATGGAAACTATACAATTCTATAGCTTAAGAACTTTGATTAGTTGCTCCTCTGATCCAGAATGGATTCTCGGAAGTTATACTTTGTGGTTCCCGAGTATAGGAAACCTCGAAACCATGGAGTAGCAATCAAGTGTTGTATGACATGATGCCAGTCAATTTATATACAGAGGTCTACCATAGGCAATACAATTAAGTCATCCACGGTGTCTTTGATCTGTTCTGAGATTTCACAGTGTCATCCACAACGATAGACTCCAGCACTTGAGTCAAGACAAAAAAAGGCTTGTCTAGGAACTATAATACCTTTCCAAATAAGATGTTGAGTGTGGTGACATATAAGAATAGTTAGATCCAAGATCTATAAGTGCAAATGCCACATGAGAACAAATTGTAAAATATCTATGACCATGTCATTTGATGCCTCAGCATCCACTCTGTCCATAGCATAGAGATACGAGTTGGTCCCCATTACCCTGAAGAACGTTACCGCTAGCAACATGTGGAGCGACCTTAGCTGGTTGAGCTGTAATCTGAGTGTTACCAATATGCCTTGGACACAAACCTATGCTGATATCCATTAAAGGCTGATATGCAGTACATATTTGGGTTTTTATATAGTCCAAATACTACAATCCAGTTGGCTCCTTGATGCATTCTGCTCTGAATTTCTTTTTTCCAGCAACTATGGAATGCAAATTAGTCGTACATGGGAAGTTTCTAAGAGGGCATGGTCTTCATTCGTTTTATTAACATTACTAAAGTGCTTAACCTTCGGGACACATTCAATATAGCTGTGCAAGGATTTTATTTTAATATTTTTGAATGACATTCTTTTTGCAGGTAAGCAATTTAACATCACCTGCTAATGCTATTAACTATTTTTTATTTATTTTTTTGAAATAGGTAACTTTGCTATTAACTAGAATTTTTGCGCAACTATATTGAATGTGTCCCGAAGGCTAAGCACTTCAGTAATGTCAATTAAAAGTTTTGTGAATCATGCTTTCTTGGATACGAACCATGTACAAATGATTTGAATTTCTAAAAAAGCAATAAACTAATGTTGAGTTGAATGCATCAAGGAGCTCATTAGATTGCCGATTTGGCTATATAAATGCCCAAATATATACTGCACATCGGCCTTTTAATGGATATCAGCACAGGTTTGTGGTCTATTTCAAGCTACTCTCACCCTGGTCTATTCCCATGAAATCATGTGCCATGTTCCTCACTGTCATTCACATTTTTTTTCTTGTTTCGTGAAATGAAAGACACAAACCTATGTCTTTCCATTTATCAAAAGAGGATCAGTTTAGTTTGAATTTTGTGAGTTCAATTGGATTGGGATGGAATTTATCTACGAAAAGCTTACTTTCCAAAATTTTGACAAATCTCATTTTGTATGGGGATTTCCACAGGACCCTTTTCCTTTGTTAAGAGTTATATTTTGTTCTCATCTCATGGATAAATGTTTCTTATCTAAAAAGAGAACTTTGAGTTCTTTGCTTTACCTGAAAAACCAACAATTCATATTCGAAAGGTTTAGAATGGCAATCTGGAACTCTTGTAGCAATAACAACTACCATTACAAACCTGAAGGGTAACATGGACTTGTTAAGGTTTGATTCAGTTGGGTTTCTTTGCGTTTTTTCTCATTTCTCAGACGAGTTAGTTGTAGAAGACAGGTTGTTCACCTTATTTACTATAGGACTGTTAGCATTTGCACTTCTCCATTAGCTTTTAAGTATTTTAGGTTCAGCCCAGACCAAAAGTGTTCACTTTGAACAAACATAAAGGCACATTTATGCTTAGCGTTATATATCAACAAGCAAAATACTCCTAACTCTTTTCTGACGGGAGTCCGGGGACAATTTTGAGTTTTTGCACTTGATATTTGTAATGCCTTCCTACTGGAGATAATTATCATTTGGTCATGTATAGGAGTATTATTTTTCTTGGAATTCATCCTTCTGGTAATTTTCATATTTTCTCGGAAAAGCCCTTCTTGCTAAAGTGCCACTGTATCTCTCTGTCATAATACACTTTACGGAAAAGGCATTTTGAGATGTACTACTTTGCAATGTCTGGGTATAAGATATAGTTCTCGATCATCTTTCTCCTGATGCTTTTTATATGTATTATATATGTTATTTAATTATCTGATGTGTCCACTTAAATGTTCTACAGTTGGTGTTGAAGATGTCTTCAGCTCAAGATCCTTTCTATATTGTCAAGGAGGAAATTCAAGAATCTGTAAGTTCATCTACTTCGATCTAGTTATGTTCTAATAATCTTGAAGTGAAGTAAATCTTATTCGTCTGAGATTTGTTTTTTTTTATTAGTGTGTTGTTCTTATTCTTGCATGGGAGATAGATTCATGAAGGGTTGGTGGTGTTTCCTGTCATGTATCTATCTCCATCTCTCTCGACATTCTGGGAAGGGGGTGAGTAATGTTTCTATGAGATAAAGTATAATTCTTCGAGACTAAGGTTTAAAAATCAAGTACTCCAGTAACAGCTAACAGGTAAGAAAGCTATGATTTTCTTGTGGCTATTGTCTATTTTCATAGAAAAAATAAAAAAACAAGCTGAACAAACTAAGAAATTTCATCTCTTTTACTATTAAGAAAAAATAAGCTAAGACTCTCCTTGCTGGTAGAATCTGTTGGATCTCATATGTGATCAAGTTTGTTGACTACTTAATCTAACTCTTGAAATTCCTGCTTGGTTAGATTGACAAGCTCTTGTCCACGTTTCATCAATGGGAGCAAACTTCTGCCGGAAGTAGTGAGCAAGTACATCTTACCAAAGAACTTCTTGCTTCATCTGAGAGCATTGAGTGGCAGGTATGTGCGGAAACGTAGCTCCTTGAAACTTGGTTAATTGATACTTATCACTGTTTGGTCTGTTAAATTCTCATTATATTTCTTCCTGATTGCCTGTACTTTACGTGAATGAATTACGACAATTTTGAATAGCCAGAGACAATTGCATGTTTGATGTGTTGCACCTGTCTTAAGTTCAGTCTATGAATTTGTGCTGTCCAATCTGTCGACTTTAGTACTTAGGGAAAGATGTTCTTCTTTCAGTGAACAATAGCAACATAACCAGAGTTGTTCTTCTGTCAGTGTGATTTGATATTGATCTACTGCTGCTATGACTTGCTTCATATCCTTATCAATGCTGAATTCCTGTTTTCTTGATGAGAAGGTGGATGAATTGGACAAAACAATTGATGTTGCAGCAAGAGATCCTTCTTGGTATGGTATTAATGATATTGAGCTTGATAAGAGAAGAAGATGGACCAGCAATGCCCGTGCTCAAGTATAACTGATTCTGTTGATGCCAAATATCTATTCTTTTGTTTCTTGGTTCCTGAAAATAAATAAACGATTTCAAATTGCCTTTAACCAGGTGGGAAGCATGAAGAAAGCTGTAGTAGCTGGAAAACAGTCAAATGGGACAAGTACATCTAATCTGAGTGGGATGCGGCGAGAACTGTTGAGATTGCCAGATTCTGAACAGAAAGAGAGATCCAATGCATACAATGCCCGAGATAATGATGACTTCATATCATCAGAATCAGATAGACAATTACTTCTTATGAGGTAATATTCCCTCCATTTCTTTGCATCTATCCTTGTTTGTCATTTTTATTACCAATTGATTTTTATTCCGATCTCACTGTAAATCTTGCATGCACCTATCCATTTATCTTTCTGAGGCATCTTAATGTTTTCTCAATCTTTACTATGGAATCCTAGCCTTTGATTTTATTTATAAGGGGAGGATAATATGTATCATCAGCCTCTCTAAGATCTTTATGTCATAGTCATAACCATTCTGCCATGTCTTTTTAGCTTTCTGAGTTTGTCTACTTAACTTCATTTATCATGGAATAGTATGCTGTATTGAATACCCTTTAGTACCTGTTATTAAAGGTATTAGCAGTATAGTTTTGCCAGCACTTAAATTATGTCGAGAAGACTTCAATTAACGTAGAATTTAGAGGATGTAGCATAATCTTGAATCTATTTGATATGGTACTATGTCATTTTTATAGCTTTTAAGTATAACTTTCAGAAAGCGTATTTTCTTGATCGTCTGTGCAGGCAACAGGATGAAGAACTAGACGAGCTTAGTGCCAGCGTAGTCAGAATTGGAGATGTTGGGCTCACCATACACGATGAACTTCTTGCACACGTGAGTGCGACCACCTGCTTAACCAGTTCCTTGAATTTGTCACTGAACAAATTGCAGCTCTGCTTAAACTCCTCCGAAGCAAAATGTAGTTAAAATCAATATATGTTCTTGCAGGAGAAGATCTTAAGTGAGTTGGACACGGAGATGGACAGTACATCAAATCGTCTAGATTTCATTCAGGTAACTCAGTTCTTTCTATAGTTTTCAAATTTACTAAATCAGCCGCATCAACAATGCACTTTTTTATCGCTGTTATTGTATTCTTATCGCATGGAAACCACAATTTGTTGTAGAAAAAGATTGGCATGGTAATGAAGAAGGCGAGCGTCAAGGGACAGATGATGATGATTTGTTTTCTGATAGTTTTATTTATTGTTCTTTTTGTTCTGGTTTT</genome_strand>
        <mrna_strand>CAGCGACATAGCGAAGCATCAAAATGGATCTCTGAAACTGTAGCTGAGAAAATCAGTGATCCTTCAATTGCTTACAATCTGCGTTAGCTTCTCCATCTTCGTCTTGTTGCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTGTTGAAGATGTCTTCAGCTCAAGATCCTTTCTATATTGTCAAGGAGGAAATTCAAGAATCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGACAAGCTCTTGTCCACGTTTCATCAATGGGAGCAAACTTCTGCCGGAAGTAGTGAGCAAGTACATCTTACCAAAGAACTTCTTGCTTCATCTGAGAGCATTGAGTGGCAG............................................................................................................................................................................................................................................................................................................................................................................GTGGATGAATTGGACAAAACAATTGATGTTGCAGCAAGAGATCCTTCTTGGTATGGTATTAATGATATTGAGCTTGATAAGAGAAGAAGATGGACCAGCAATGCCCGTGCTCAA..........................................................................................GTGGGAAGCATGAAGAAAGCTGTAGTAGCTGGAAAACAGTCAAATGGGACAAGTACATCTAATCTGAGTGGGATGCGGCGAGAACTGTTGAGATTGCCAGATTCTGAACAGAAAGAGAGATCCAATGCATACAATGCCCGAGATAATGATGACTTCATATCATCAGAATCAGATAGACAATTACTTCTTATGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGGATGAAGAACTAGACGAGCTTAGTGCCAGCGTAGTCAGAATTGGAGATGTTGGGCTCACCATACACGATGAACTTCTTGCACAC..................................................................................................................GAGAAGATCTTAAGTGAGTTGGACACGGAGATGGACAGTACATCAAATCGTCTAGATTTCATTCAG.................................................................................................................AAAAAGATTGGCATGGTAATGAAGAAGGCGAGCGTCAAGGGACAGATGATGATGATTTGTTTTCTGATAGTTTAATTTATTGTTCTTTTTGTTCTGGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698619" ref_strand="+" ref_description="SGN-E698619 [FA07AB11]">
      <seq>gcccgtaaagcttctttttttttggaaggagaaaaataaaattcccttattctgcagaaatnaaagggaaatagggaagcatcaaaatggatctctgaaactgtagctgaaaaaatccctgatccttcaattgcttacaatctgcgttagcttctccatcttcgtcttgttgcgagttggggttgaaaatgtcttcagctcaagatcctttctatattgtcaaggaggaaattcaagaatctattgacaagctcttgtccacgtttcatcaatgggagcaaacttctgccggaagtagtgagcaagtacatcttaccaaagaacttcttgcttcatctgaaagcattgagtggcagggggatgaattggacaaaacaattgatgttgcagcaagagatccttcttggtatggtattaatgatattgagcttgataagagaaaaagatggaccaccaatgcccgtgctcaagtgggaagcatgaagaaagctgtagtagctggaaaacagtcaaatgggacaagtacatctaatctgagtgggatgcggcaaaaactgttgaaattgccaaattctgaacagaaagagagatccaatgcatacaatgcccgagataatgatgacttcatatcatcagaatcaaatagacaattacttcttatgaggcaacaggatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0079B07-GI8N8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0079B07.1" temp_strand="-" temp_description="C12HBa0079B07.1  AC229682.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0079B07 upload_account_name:italy">
        <position start="102350" stop="97571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102063" g_stop="101889" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.891"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101888" i_stop="99297" i_length="2592">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99296" g_stop="99231" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="242" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99230" i_stop="98753" i_length="478">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98752" g_stop="98639" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="356" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98638" i_stop="98275" i_length="364">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98274" g_stop="98161" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="470" r_length="114" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98160" i_stop="98071" i_length="90">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98070" g_stop="97877" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="664" r_length="194" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0079B07.1" gen_strand="-" ref_id="SGN-E698619" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0079B07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102063" e_stop="101889"/>
          <exon e_start="99296" e_stop="99231"/>
          <exon e_start="98752" e_stop="98639"/>
          <exon e_start="98274" e_stop="98161"/>
          <exon e_start="98070" e_stop="97877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACC-AAAATCACTTTTTTTTTTGGAAGGAGAAAAATAAAACTTCCTTCTTCTGCAGAAATCACAGCGACATAGCGAAGCATCAAAATGGATCTCTGAAACTGTAGCTGAGAAAATCAGTGATCCTTCAATTGCTTACAATCTGCGTTAGCTTCTCCATCTTCGTCTTGTTGCGAGGTGAGATAACAAATTATACTTTGCAGCTCTTGATTTTGGTTCGATTTGATTTAGGTATTTTTGTTCTGTGAAATTTAGGCATCAATGTTTCTTAGATTTGCGATTTCACTATGAAATTTGCTGTATTAGGTTCTAATTTTGCTTCAATTTGGATTTTTGTTGATCTGTGGCTTCATCCTGCAATTAAACGAATCATATACTGGCATAATGTGTATCCGATGATGTTTTAGAGTAGAAATCAAAGCTTATTTCTCTCTGAGAGGTTAGTTTGGTAGATCGTCGGGAAACACCTCTGTATTGTATTATTCTCGGGTTTCATGAACTGTATTTGTAGTGTAGAGTACAAAAAAACCTGACTGATCATCCTGTGCACCTTCGTGAAAGATATGATTTTTATCATGTGTTATGGAAACTATACAATTCTATAGCTTAAGAACTTTGATTAGTTGCTCCTCTGATCCAGAATGGATTCTCGGAAGTTATACTTTGTGGTTCCCGAGTATAGGAAACCTCGAAACCATGGAGTAGCAATCAAGTGTTGTATGACATGATGCCAGTCAATTTATATACAGAGGTCTACCATAGGCAATACAATTAAGTCATCCACGGTGTCTTTGATCTGTTCTGAGATTTCACAGTGTCATCCACAACGATAGACTCCAGCACTTGAGTCAAGACAAAAAAAGGCTTGTCTAGGAACTATAATACCTTTCCAAATAAGATGTTGAGTGTGGTGACATATAAGAATAGTTAGATCCAAGATCTATAAGTGCAAATGCCACATGAGAACAAATTGTAAAATATCTATGACCATGTCATTTGATGCCTCAGCATCCACTCTGTCCATAGCATAGAGATACGAGTTGGTCCCCATTACCCTGAAGAACGTTACCGCTAGCAACATGTGGAGCGACCTTAGCTGGTTGAGCTGTAATCTGAGTGTTACCAATATGCCTTGGACACAAACCTATGCTGATATCCATTAAAGGCTGATATGCAGTACATATTTGGGTTTTTATATAGTCCAAATACTACAATCCAGTTGGCTCCTTGATGCATTCTGCTCTGAATTTCTTTTTTCCAGCAACTATGGAATGCAAATTAGTCGTACATGGGAAGTTTCTAAGAGGGCATGGTCTTCATTCGTTTTATTAACATTACTAAAGTGCTTAACCTTCGGGACACATTCAATATAGCTGTGCAAGGATTTTATTTTAATATTTTTGAATGACATTCTTTTTGCAGGTAAGCAATTTAACATCACCTGCTAATGCTATTAACTATTTTTTATTTATTTTTTTGAAATAGGTAACTTTGCTATTAACTAGAATTTTTGCGCAACTATATTGAATGTGTCCCGAAGGCTAAGCACTTCAGTAATGTCAATTAAAAGTTTTGTGAATCATGCTTTCTTGGATACGAACCATGTACAAATGATTTGAATTTCTAAAAAAGCAATAAACTAATGTTGAGTTGAATGCATCAAGGAGCTCATTAGATTGCCGATTTGGCTATATAAATGCCCAAATATATACTGCACATCGGCCTTTTAATGGATATCAGCACAGGTTTGTGGTCTATTTCAAGCTACTCTCACCCTGGTCTATTCCCATGAAATCATGTGCCATGTTCCTCACTGTCATTCACATTTTTTTTCTTGTTTCGTGAAATGAAAGACACAAACCTATGTCTTTCCATTTATCAAAAGAGGATCAGTTTAGTTTGAATTTTGTGAGTTCAATTGGATTGGGATGGAATTTATCTACGAAAAGCTTACTTTCCAAAATTTTGACAAATCTCATTTTGTATGGGGATTTCCACAGGACCCTTTTCCTTTGTTAAGAGTTATATTTTGTTCTCATCTCATGGATAAATGTTTCTTATCTAAAAAGAGAACTTTGAGTTCTTTGCTTTACCTGAAAAACCAACAATTCATATTCGAAAGGTTTAGAATGGCAATCTGGAACTCTTGTAGCAATAACAACTACCATTACAAACCTGAAGGGTAACATGGACTTGTTAAGGTTTGATTCAGTTGGGTTTCTTTGCGTTTTTTCTCATTTCTCAGACGAGTTAGTTGTAGAAGACAGGTTGTTCACCTTATTTACTATAGGACTGTTAGCATTTGCACTTCTCCATTAGCTTTTAAGTATTTTAGGTTCAGCCCAGACCAAAAGTGTTCACTTTGAACAAACATAAAGGCACATTTATGCTTAGCGTTATATATCAACAAGCAAAATACTCCTAACTCTTTTCTGACGGGAGTCCGGGGACAATTTTGAGTTTTTGCACTTGATATTTGTAATGCCTTCCTACTGGAGATAATTATCATTTGGTCATGTATAGGAGTATTATTTTTCTTGGAATTCATCCTTCTGGTAATTTTCATATTTTCTCGGAAAAGCCCTTCTTGCTAAAGTGCCACTGTATCTCTCTGTCATAATACACTTTACGGAAAAGGCATTTTGAGATGTACTACTTTGCAATGTCTGGGTATAAGATATAGTTCTCGATCATCTTTCTCCTGATGCTTTTTATATGTATTATATATGTTATTTAATTATCTGATGTGTCCACTTAAATGTTCTACAGTTGGTGTTGAAGATGTCTTCAGCTCAAGATCCTTTCTATATTGTCAAGGAGGAAATTCAAGAATCTGTAAGTTCATCTACTTCGATCTAGTTATGTTCTAATAATCTTGAAGTGAAGTAAATCTTATTCGTCTGAGATTTGTTTTTTTTTATTAGTGTGTTGTTCTTATTCTTGCATGGGAGATAGATTCATGAAGGGTTGGTGGTGTTTCCTGTCATGTATCTATCTCCATCTCTCTCGACATTCTGGGAAGGGGGTGAGTAATGTTTCTATGAGATAAAGTATAATTCTTCGAGACTAAGGTTTAAAAATCAAGTACTCCAGTAACAGCTAACAGGTAAGAAAGCTATGATTTTCTTGTGGCTATTGTCTATTTTCATAGAAAAAATAAAAAAACAAGCTGAACAAACTAAGAAATTTCATCTCTTTTACTATTAAGAAAAAATAAGCTAAGACTCTCCTTGCTGGTAGAATCTGTTGGATCTCATATGTGATCAAGTTTGTTGACTACTTAATCTAACTCTTGAAATTCCTGCTTGGTTAGATTGACAAGCTCTTGTCCACGTTTCATCAATGGGAGCAAACTTCTGCCGGAAGTAGTGAGCAAGTACATCTTACCAAAGAACTTCTTGCTTCATCTGAGAGCATTGAGTGGCAGGTATGTGCGGAAACGTAGCTCCTTGAAACTTGGTTAATTGATACTTATCACTGTTTGGTCTGTTAAATTCTCATTATATTTCTTCCTGATTGCCTGTACTTTACGTGAATGAATTACGACAATTTTGAATAGCCAGAGACAATTGCATGTTTGATGTGTTGCACCTGTCTTAAGTTCAGTCTATGAATTTGTGCTGTCCAATCTGTCGACTTTAGTACTTAGGGAAAGATGTTCTTCTTTCAGTGAACAATAGCAACATAACCAGAGTTGTTCTTCTGTCAGTGTGATTTGATATTGATCTACTGCTGCTATGACTTGCTTCATATCCTTATCAATGCTGAATTCCTGTTTTCTTGATGAGAAGGTGGATGAATTGGACAAAACAATTGATGTTGCAGCAAGAGATCCTTCTTGGTATGGTATTAATGATATTGAGCTTGATAAGAGAAGAAGATGGACCAGCAATGCCCGTGCTCAAGTATAACTGATTCTGTTGATGCCAAATATCTATTCTTTTGTTTCTTGGTTCCTGAAAATAAATAAACGATTTCAAATTGCCTTTAACCAGGTGGGAAGCATGAAGAAAGCTGTAGTAGCTGGAAAACAGTCAAATGGGACAAGTACATCTAATCTGAGTGGGATGCGGCGAGAACTGTTGAGATTGCCAGATTCTGAACAGAAAGAGAGATCCAATGCATACAATGCCCGAGATAATGATGACTTCATATCATCAGAATCAGATAGACAATTACTTCTTATGAG</genome_strand>
        <mrna_strand>GCCCGTAAAGCTTCTTTTTTTTTGGAAGGAGAAAAATAAAATTCCCTTATTCTGCAGAAATNAAAGGGAAATAGGGAAGCATCAAAATGGATCTCTGAAACTGTAGCTGAAAAAATCCCTGATCCTTCAATTGCTTACAATCTGCGTTAGCTTCTCCATCTTCGTCTTGTTGCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGGGTTGAAAATGTCTTCAGCTCAAGATCCTTTCTATATTGTCAAGGAGGAAATTCAAGAATCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGACAAGCTCTTGTCCACGTTTCATCAATGGGAGCAAACTTCTGCCGGAAGTAGTGAGCAAGTACATCTTACCAAAGAACTTCTTGCTTCATCTGAAAGCATTGAGTGGCAG............................................................................................................................................................................................................................................................................................................................................................................GGGGATGAATTGGACAAAACAATTGATGTTGCAGCAAGAGATCCTTCTTGGTATGGTATTAATGATATTGAGCTTGATAAGAGAAAAAGATGGACCACCAATGCCCGTGCTCAA..........................................................................................GTGGGAAGCATGAAGAAAGCTGTAGTAGCTGGAAAACAGTCAAATGGGACAAGTACATCTAATCTGAGTGGGATGCGGCAAAAACTGTTGAAATTGCCAAATTCTGAACAGAAAGAGAGATCCAATGCATACAATGCCCGAGATAATGATGACTTCATATCATCAGAATCAAATAGACAATTACTTCTTATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>260</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="10865" PGL_stop="6182"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10865" e_stop="10541"/>
            <exon e_start="9564" e_stop="9532"/>
            <exon e_start="9448" e_stop="9169"/>
            <exon e_start="8726" e_stop="8243"/>
            <exon e_start="7473" e_stop="6925"/>
            <exon e_start="6622" e_stop="6182"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.956" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.506" acc_prob="0.812" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10865" e_stop="10541" e_length="325"/>
          </exon>
          <intron i_serial="1" don_prob="0.956" acc_prob="0.999">
            <gDNA_intron_boundary i_start="10540" i_stop="9565" i_length="976"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9564" e_stop="9532" e_length="33"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="9531" i_stop="9449" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="9448" e_stop="9169" e_length="280"/>
          </exon>
          <intron i_serial="3" don_prob="0.506" acc_prob="0.812">
            <gDNA_intron_boundary i_start="9168" i_stop="8727" i_length="442"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="8726" e_stop="8243" e_length="484"/>
          </exon>
          <intron i_serial="4" don_prob="0.975" acc_prob="0.997">
            <gDNA_intron_boundary i_start="8242" i_stop="7474" i_length="769"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="7473" e_stop="6925" e_length="549"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="6924" i_stop="6623" i_length="302"/>
          </intron>
          <exon e_serial="6" e_score="0.986">
            <gDNA_exon_boundary e_start="6622" e_stop="6182" e_length="441"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10865" stop="10541"/>
              <exon start="9564" stop="9532"/>
              <exon start="9448" stop="9169"/>
              <exon start="8726" stop="8639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10687" stop="10541"/>
              <exon start="9564" stop="9532"/>
              <exon start="9448" stop="9169"/>
              <exon start="8726" stop="8548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9340" stop="9169"/>
              <exon start="8726" stop="8243"/>
              <exon start="7473" stop="7298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8325" stop="8243"/>
              <exon start="7473" stop="6925"/>
              <exon start="6622" stop="6580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375519" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8321" stop="8243"/>
              <exon start="7473" stop="6946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7306" stop="6925"/>
              <exon start="6622" stop="6272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7008" stop="6925"/>
              <exon start="6622" stop="6182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6579" stop="6223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338943" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCACTCCGATCAAAACTCTCCAAAAAAAAATCCAAAAATCTTCCTTCCCCACGAAGGAATTTCAAGAATCGACAAACCTAGGGATCATCAAAGCGTAAAATTGCTAACTTTTTTGGGGTTTTTCGATTTTTCTCTGTGGGGGGTTTTAGTGTATGTGAAAAATTATGGAGGATTATAGCTATGGGAGCAGCGATGATGATGAATGGGACAATCAACAGTGCAATAATGACGATGAAGACGATGATGATGGTGAATTTCTTGATGGGTTTACGGAAATTGAACAAGAGAGAAACGGAATCTCTGGAAAGGGTCCTTCATGCAAG : GTAATCAGGAAAGAGACTCTTTTAGCTGCACAG : AAAGAAGACTTGCAAAGAGTGATGGACTTGCTATCTCTGAAGGAACATCATGCTCGAAGCTTGCTTATTCATTACCGATGGGAAGTTGACAAGGTCTTTGCGGTTCTTGTTGAGAGAGGGACAGAAATGTTATATGCTGAAGCGGGTGTGACACTGGAAGGGAAAGAGGAACATACTTCCACTCTGTCGACATCTGAAGTGACGTGTCAAATTTGCTTCGAAGATGCCCCTGTTGAGAAGACCACTGTAATGGACTGCAACCATATATTTTGCAATGAAT : GTTGGACAACTCATTTCATTGTAAAAATAAATGAGGGTCAGAGTAAACAAGTAACTTGCATGGCCCAAAAGTGCAATGTGATCTGTGATGAAGGAAAGATTAGGGATCTCGTCACTGCAAGAGATCCTGCTTTAGCAGAGAAATTTGATCGTTTTCTGTTAGAGTCATATATTGATGATAACAAGAGGGTTAAATGGTGCCCTAGTGTTCCTCATTGTGGAAATGCAATTCGTATTGAGGATGATGATTACTGCTGTGAAGTTGAATGTGCATGTGGTGTACAGTTCTGTTTTAATTGTTTATCAGAAGCGCACTCACCTTGTTCATGTCTGATGTGGAAACTTTGGATGAAGAAGTGCAAGAACGATGGGAAGACAGTAACGTGGATAAGTGAAAATGCCAAACATTGCCCAAACTGTCACAATGCCGTGGAGAAGAATGGGGGATGCAACCTTGTAAGATGTAGATGTGGACAGCCGTTTTG : TTGGTTGTGCGGTGGAGCTACTGGCTTAGACCACACATGGAGTAGCATTCGAGGTCACACTTGTGGCATTTATAAGGAAGGGGAAGAGGATAAGTCGACGACTGTCAGAAATGATCTCTTGCGCTATACTCATTATTATGAGCGCTATATGGTTCATCGTGATTCGTTGGAGGCTGAAGCAAACATGAAGCAAAAACTAAAGTTTGAAGTGTTGAAACTCGAAGCAAGGGAATTGCTATCAAAGGACTTCAGCTGGGTAGAAAATGGATGTAATAGACTCCTTGAATTGAGGCGAATTCTCTCCTGTTCCTATCCAGTTTCATTTTACGTTTTTGATCAGACGCTGTTCAAGGATGAAATGACACAAAAAGATAGGGAAATAAAGAAGAACCTTTTTGAAAACCTGCAGCAGCAACTTGAAATAAACGTTGAGAGACTTTCGATGTTCTTGGAAGAACCATTTGCTAAATATCCTGAAGATAAACTTTTGGAGACTAGAACGAAGATCATCACTCTCTCCGTACTAACAGACAACCTCTGCAAAGAGTT : GTACGATTGCATTGACAACGATTTACTGCTTCCTCTACAGCAGGCGAATCATACCATAGCTCATTATAGATCCGAGGGAGTGGCGAAAGCATCAGAACTTCCTAATTGACATTCCACCAACACTAGGCATGTGAGCACTCTCAATCAGAGGCAAGAAAAGATGCACATTCCTTTTCTCATGAGCTGATCTACAATTTTATGCTAGAGGGTTTGATTACTACAGCATCTAATATTCTTTTGCTACACTTGATATGAATTTAGTCTAGATTCTTAACTACATATAGTTTGAGTTGAAGACAATGTATGAACATTGGTTTTCGTTTGGCCATATCATATCATATATTATTATAAGTGGGAAGATTCAAACTGCAAAGTTGAATTATCATTTTGTCCCTCTACAGTTAATAAATGAGTACATTGATATTGCTTTTAATCGTAATC</gDNA_template>
            <first_frame> F  H  S  D  Q  N  S  P  K  K  N  P  K  I  F  L  P  H  E  G  I  S  R  I  D  K  P  R  D  H  Q  S  V  K  L  L  T  F  L  G  F  F  D  F  S  L  W  G  V  L  V  Y  V  K  N  Y  G  G  L  *  L  W  E  Q  R  *  *  *  M  G  Q  S  T  V  Q  *  *  R  *  R  R  *  *  W  *  I  S  *  W  V  Y  G  N  *  T  R  E  K  R  N  L  W  K  G  S  F  M  Q   : G  N  Q  E  R  D  S  F  S  C  T   : E  R  R  L  A  K  S  D  G  L  A  I  S  E  G  T  S  C  S  K  L  A  Y  S  L  P  M  G  S  *  Q  G  L  C  G  S  C  *  E  R  D  R  N  V  I  C  *  S  G  C  D  T  G  R  E  R  G  T  Y  F  H  S  V  D  I  *  S  D  V  S  N  L  L  R  R  C  P  C  *  E  D  H  C  N  G  L  Q  P  Y  I  L  Q  *  M :   L  D  N  S  F  H  C  K  N  K  *  G  S  E  *  T  S  N  L  H  G  P  K  V  Q  C  D  L  *  *  R  K  D  *  G  S  R  H  C  K  R  S  C  F  S  R  E  I  *  S  F  S  V  R  V  I  Y  *  *  *  Q  E  G  *  M  V  P  *  C  S  S  L  W  K  C  N  S  Y  *  G  *  *  L  L  L  *  S  *  M  C  M  W  C  T  V  L  F  *  L  F  I  R  S  A  L  T  L  F  M  S  D  V  E  T  L  D  E  E  V  Q  E  R  W  E  D  S  N  V  D  K  *  K  C  Q  T  L  P  K  L  S  Q  C  R  G  E  E  W  G  M  Q  P  C  K  M  *  M  W  T  A  V  L  :  L  V  V  R  W  S  Y  W  L  R  P  H  M  E  *  H  S  R  S  H  L  W  H  L  *  G  R  G  R  G  *  V  D  D  C  Q  K  *  S  L  A  L  Y  S  L  L  *  A  L  Y  G  S  S  *  F  V  G  G  *  S  K  H  E  A  K  T  K  V  *  S  V  E  T  R  S  K  G  I  A  I  K  G  L  Q  L  G  R  K  W  M  *  *  T  P  *  I  E  A  N  S  L  L  F  L  S  S  F  I  L  R  F  *  S  D  A  V  Q  G  *  N  D  T  K  R  *  G  N  K  E  E  P  F  *  K  P  A  A  A  T  *  N  K  R  *  E  T  F  D  V  L  G  R  T  I  C  *  I  S  *  R  *  T  F  G  D  *  N  E  D  H  H  S  L  R  T  N  R  Q  P  L  Q  R  V  :  V  R  L  H  *  Q  R  F  T  A  S  S  T  A  G  E  S  Y  H  S  S  L  *  I  R  G  S  G  E  S  I  R  T  S  *  L  T  F  H  Q  H  *  A  C  E  H  S  Q  S  E  A  R  K  D  A  H  S  F  S  H  E  L  I  Y  N  F  M  L  E  G  L  I  T  T  A  S  N  I  L  L  L  H  L  I  *  I  *  S  R  F  L  T  T  Y  S  L  S  *  R  Q  C  M  N  I  G  F  R  L  A  I  S  Y  H  I  L  L  *  V  G  R  F  K  L  Q  S  *  I  I  I  L  S  L  Y  S  *  *  M  S  T  L  I  L  L  L  I  V  I </first_frame>
            <second_frame>  F  T  P  I  K  T  L  Q  K  K  I  Q  K  S  S  F  P  T  K  E  F  Q  E  S  T  N  L  G  I  I  K  A  *  N  C  *  L  F  W  G  F  S  I  F  L  C  G  G  F  *  C  M  *  K  I  M  E  D  Y  S  Y  G  S  S  D  D  D  E  W  D  N  Q  Q  C  N  N  D  D  E  D  D  D  D  G  E  F  L  D  G  F  T  E  I  E  Q  E  R  N  G  I  S  G  K  G  P  S  C  K  :  V  I  R  K  E  T  L  L  A  A  Q  :  K  E  D  L  Q  R  V  M  D  L  L  S  L  K  E  H  H  A  R  S  L  L  I  H  Y  R  W  E  V  D  K  V  F  A  V  L  V  E  R  G  T  E  M  L  Y  A  E  A  G  V  T  L  E  G  K  E  E  H  T  S  T  L  S  T  S  E  V  T  C  Q  I  C  F  E  D  A  P  V  E  K  T  T  V  M  D  C  N  H  I  F  C  N  E   : C  W  T  T  H  F  I  V  K  I  N  E  G  Q  S  K  Q  V  T  C  M  A  Q  K  C  N  V  I  C  D  E  G  K  I  R  D  L  V  T  A  R  D  P  A  L  A  E  K  F  D  R  F  L  L  E  S  Y  I  D  D  N  K  R  V  K  W  C  P  S  V  P  H  C  G  N  A  I  R  I  E  D  D  D  Y  C  C  E  V  E  C  A  C  G  V  Q  F  C  F  N  C  L  S  E  A  H  S  P  C  S  C  L  M  W  K  L  W  M  K  K  C  K  N  D  G  K  T  V  T  W  I  S  E  N  A  K  H  C  P  N  C  H  N  A  V  E  K  N  G  G  C  N  L  V  R  C  R  C  G  Q  P  F  C :   W  L  C  G  G  A  T  G  L  D  H  T  W  S  S  I  R  G  H  T  C  G  I  Y  K  E  G  E  E  D  K  S  T  T  V  R  N  D  L  L  R  Y  T  H  Y  Y  E  R  Y  M  V  H  R  D  S  L  E  A  E  A  N  M  K  Q  K  L  K  F  E  V  L  K  L  E  A  R  E  L  L  S  K  D  F  S  W  V  E  N  G  C  N  R  L  L  E  L  R  R  I  L  S  C  S  Y  P  V  S  F  Y  V  F  D  Q  T  L  F  K  D  E  M  T  Q  K  D  R  E  I  K  K  N  L  F  E  N  L  Q  Q  Q  L  E  I  N  V  E  R  L  S  M  F  L  E  E  P  F  A  K  Y  P  E  D  K  L  L  E  T  R  T  K  I  I  T  L  S  V  L  T  D  N  L  C  K  E  L :   Y  D  C  I  D  N  D  L  L  L  P  L  Q  Q  A  N  H  T  I  A  H  Y  R  S  E  G  V  A  K  A  S  E  L  P  N  *  H  S  T  N  T  R  H  V  S  T  L  N  Q  R  Q  E  K  M  H  I  P  F  L  M  S  *  S  T  I  L  C  *  R  V  *  L  L  Q  H  L  I  F  F  C  Y  T  *  Y  E  F  S  L  D  S  *  L  H  I  V  *  V  E  D  N  V  *  T  L  V  F  V  W  P  Y  H  I  I  Y  Y  Y  K  W  E  D  S  N  C  K  V  E  L  S  F  C  P  S  T  V  N  K  *  V  H  *  Y  C  F  *  S  *   </second_frame>
            <third_frame>   S  L  R  S  K  L  S  K  K  K  S  K  N  L  P  S  P  R  R  N  F  K  N  R  Q  T  *  G  S  S  K  R  K  I  A  N  F  F  G  V  F  R  F  F  S  V  G  G  F  S  V  C  E  K  L  W  R  I  I  A  M  G  A  A  M  M  M  N  G  T  I  N  S  A  I  M  T  M  K  T  M  M  M  V  N  F  L  M  G  L  R  K  L  N  K  R  E  T  E  S  L  E  R  V  L  H  A  R :   *  S  G  K  R  L  F  *  L  H  R :   K  K  T  C  K  E  *  W  T  C  Y  L  *  R  N  I  M  L  E  A  C  L  F  I  T  D  G  K  L  T  R  S  L  R  F  L  L  R  E  G  Q  K  C  Y  M  L  K  R  V  *  H  W  K  G  K  R  N  I  L  P  L  C  R  H  L  K  *  R  V  K  F  A  S  K  M  P  L  L  R  R  P  L  *  W  T  A  T  I  Y  F  A  M  N  :  V  G  Q  L  I  S  L  *  K  *  M  R  V  R  V  N  K  *  L  A  W  P  K  S  A  M  *  S  V  M  K  E  R  L  G  I  S  S  L  Q  E  I  L  L  *  Q  R  N  L  I  V  F  C  *  S  H  I  L  M  I  T  R  G  L  N  G  A  L  V  F  L  I  V  E  M  Q  F  V  L  R  M  M  I  T  A  V  K  L  N  V  H  V  V  Y  S  S  V  L  I  V  Y  Q  K  R  T  H  L  V  H  V  *  C  G  N  F  G  *  R  S  A  R  T  M  G  R  Q  *  R  G  *  V  K  M  P  N  I  A  Q  T  V  T  M  P  W  R  R  M  G  D  A  T  L  *  D  V  D  V  D  S  R  F   : V  G  C  A  V  E  L  L  A  *  T  T  H  G  V  A  F  E  V  T  L  V  A  F  I  R  K  G  K  R  I  S  R  R  L  S  E  M  I  S  C  A  I  L  I  I  M  S  A  I  W  F  I  V  I  R  W  R  L  K  Q  T  *  S  K  N  *  S  L  K  C  *  N  S  K  Q  G  N  C  Y  Q  R  T  S  A  G  *  K  M  D  V  I  D  S  L  N  *  G  E  F  S  P  V  P  I  Q  F  H  F  T  F  L  I  R  R  C  S  R  M  K  *  H  K  K  I  G  K  *  R  R  T  F  L  K  T  C  S  S  N  L  K  *  T  L  R  D  F  R  C  S  W  K  N  H  L  L  N  I  L  K  I  N  F  W  R  L  E  R  R  S  S  L  S  P  Y  *  Q  T  T  S  A  K  S   : C  T  I  A  L  T  T  I  Y  C  F  L  Y  S  R  R  I  I  P  *  L  I  I  D  P  R  E  W  R  K  H  Q  N  F  L  I  D  I  P  P  T  L  G  M  *  A  L  S  I  R  G  K  K  R  C  T  F  L  F  S  *  A  D  L  Q  F  Y  A  R  G  F  D  Y  Y  S  I  *  Y  S  F  A  T  L  D  M  N  L  V  *  I  L  N  Y  I  *  F  E  L  K  T  M  Y  E  H  W  F  S  F  G  H  I  I  S  Y  I  I  I  S  G  K  I  Q  T  A  K  L  N  Y  H  F  V  P  L  Q  L  I  N  E  Y  I  D  I  A  F  N  R  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0079B07.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10705" stop="10541"/>
                    <exon start="9564" stop="9532"/>
                    <exon start="9448" stop="9169"/>
                    <exon start="8726" stop="8243"/>
                    <exon start="7473" stop="6925"/>
                    <exon start="6622" stop="6514"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1617</number_coding_nucleotides>
                  <number_encoded_amino_acids>539</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIMEDYSYGSSDDDEWDNQQCNNDDEDDDDGEFLDGFTEIEQERNGISGKGPSCKVIRKETLLAAQKEDLQRVMDLLSLKEHHARSLLIHYRWEVDKVFAVLVERGTEMLYAEAGVTLEGKEEHTSTLSTSEVTCQICFEDAPVEKTTVMDCNHIFCNECWTTHFIVKINEGQSKQVTCMAQKCNVICDEGKIRDLVTARDPALAEKFDRFLLESYIDDNKRVKWCPSVPHCGNAIRIEDDDYCCEVECACGVQFCFNCLSEAHSPCSCLMWKLWMKKCKNDGKTVTWISENAKHCPNCHNAVEKNGGCNLVRCRCGQPFCWLCGGATGLDHTWSSIRGHTCGIYKEGEEDKSTTVRNDLLRYTHYYERYMVHRDSLEAEANMKQKLKFEVLKLEARELLSKDFSWVENGCNRLLELRRILSCSYPVSFYVFDQTLFKDEMTQKDREIKKNLFENLQQQLEINVERLSMFLEEPFAKYPEDKLLETRTKIITLSVLTDNLCKELYDCIDNDLLLPLQQANHTIAHYRSEGVAKASELPN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="10865" e_stop="10541"/>
            <exon e_start="9564" e_stop="9532"/>
            <exon e_start="9448" e_stop="9169"/>
            <exon e_start="8726" e_stop="8243"/>
            <exon e_start="7473" e_stop="6874"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.956" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.506" acc_prob="0.812" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10865" e_stop="10541" e_length="325"/>
          </exon>
          <intron i_serial="1" don_prob="0.956" acc_prob="0.999">
            <gDNA_intron_boundary i_start="10540" i_stop="9565" i_length="976"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9564" e_stop="9532" e_length="33"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="9531" i_stop="9449" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="9448" e_stop="9169" e_length="280"/>
          </exon>
          <intron i_serial="3" don_prob="0.506" acc_prob="0.812">
            <gDNA_intron_boundary i_start="9168" i_stop="8727" i_length="442"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="8726" e_stop="8243" e_length="484"/>
          </exon>
          <intron i_serial="4" don_prob="0.975" acc_prob="0.997">
            <gDNA_intron_boundary i_start="8242" i_stop="7474" i_length="769"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="7473" e_stop="6874" e_length="600"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10865" stop="10541"/>
              <exon start="9564" stop="9532"/>
              <exon start="9448" stop="9169"/>
              <exon start="8726" stop="8639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10687" stop="10541"/>
              <exon start="9564" stop="9532"/>
              <exon start="9448" stop="9169"/>
              <exon start="8726" stop="8548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9340" stop="9169"/>
              <exon start="8726" stop="8243"/>
              <exon start="7473" stop="7298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8321" stop="8243"/>
              <exon start="7473" stop="6946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7452" stop="6874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245389" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCACTCCGATCAAAACTCTCCAAAAAAAAATCCAAAAATCTTCCTTCCCCACGAAGGAATTTCAAGAATCGACAAACCTAGGGATCATCAAAGCGTAAAATTGCTAACTTTTTTGGGGTTTTTCGATTTTTCTCTGTGGGGGGTTTTAGTGTATGTGAAAAATTATGGAGGATTATAGCTATGGGAGCAGCGATGATGATGAATGGGACAATCAACAGTGCAATAATGACGATGAAGACGATGATGATGGTGAATTTCTTGATGGGTTTACGGAAATTGAACAAGAGAGAAACGGAATCTCTGGAAAGGGTCCTTCATGCAAG : GTAATCAGGAAAGAGACTCTTTTAGCTGCACAG : AAAGAAGACTTGCAAAGAGTGATGGACTTGCTATCTCTGAAGGAACATCATGCTCGAAGCTTGCTTATTCATTACCGATGGGAAGTTGACAAGGTCTTTGCGGTTCTTGTTGAGAGAGGGACAGAAATGTTATATGCTGAAGCGGGTGTGACACTGGAAGGGAAAGAGGAACATACTTCCACTCTGTCGACATCTGAAGTGACGTGTCAAATTTGCTTCGAAGATGCCCCTGTTGAGAAGACCACTGTAATGGACTGCAACCATATATTTTGCAATGAAT : GTTGGACAACTCATTTCATTGTAAAAATAAATGAGGGTCAGAGTAAACAAGTAACTTGCATGGCCCAAAAGTGCAATGTGATCTGTGATGAAGGAAAGATTAGGGATCTCGTCACTGCAAGAGATCCTGCTTTAGCAGAGAAATTTGATCGTTTTCTGTTAGAGTCATATATTGATGATAACAAGAGGGTTAAATGGTGCCCTAGTGTTCCTCATTGTGGAAATGCAATTCGTATTGAGGATGATGATTACTGCTGTGAAGTTGAATGTGCATGTGGTGTACAGTTCTGTTTTAATTGTTTATCAGAAGCGCACTCACCTTGTTCATGTCTGATGTGGAAACTTTGGATGAAGAAGTGCAAGAACGATGGGAAGACAGTAACGTGGATAAGTGAAAATGCCAAACATTGCCCAAACTGTCACAATGCCGTGGAGAAGAATGGGGGATGCAACCTTGTAAGATGTAGATGTGGACAGCCGTTTTG : TTGGTTGTGCGGTGGAGCTACTGGCTTAGACCACACATGGAGTAGCATTCGAGGTCACACTTGTGGCATTTATAAGGAAGGGGAAGAGGATAAGTCGACGACTGTCAGAAATGATCTCTTGCGCTATACTCATTATTATGAGCGCTATATGGTTCATCGTGATTCGTTGGAGGCTGAAGCAAACATGAAGCAAAAACTAAAGTTTGAAGTGTTGAAACTCGAAGCAAGGGAATTGCTATCAAAGGACTTCAGCTGGGTAGAAAATGGATGTAATAGACTCCTTGAATTGAGGCGAATTCTCTCCTGTTCCTATCCAGTTTCATTTTACGTTTTTGATCAGACGCTGTTCAAGGATGAAATGACACAAAAAGATAGGGAAATAAAGAAGAACCTTTTTGAAAACCTGCAGCAGCAACTTGAAATAAACGTTGAGAGACTTTCGATGTTCTTGGAAGAACCATTTGCTAAATATCCTGAAGATAAACTTTTGGAGACTAGAACGAAGATCATCACTCTCTCCGTACTAACAGACAACCTCTGCAAAGAGTTGTAAGTGTGCATCACATCTAATAAACTAGCTATGCATTATTTATATTTGCG</gDNA_template>
            <first_frame> F  H  S  D  Q  N  S  P  K  K  N  P  K  I  F  L  P  H  E  G  I  S  R  I  D  K  P  R  D  H  Q  S  V  K  L  L  T  F  L  G  F  F  D  F  S  L  W  G  V  L  V  Y  V  K  N  Y  G  G  L  *  L  W  E  Q  R  *  *  *  M  G  Q  S  T  V  Q  *  *  R  *  R  R  *  *  W  *  I  S  *  W  V  Y  G  N  *  T  R  E  K  R  N  L  W  K  G  S  F  M  Q   : G  N  Q  E  R  D  S  F  S  C  T   : E  R  R  L  A  K  S  D  G  L  A  I  S  E  G  T  S  C  S  K  L  A  Y  S  L  P  M  G  S  *  Q  G  L  C  G  S  C  *  E  R  D  R  N  V  I  C  *  S  G  C  D  T  G  R  E  R  G  T  Y  F  H  S  V  D  I  *  S  D  V  S  N  L  L  R  R  C  P  C  *  E  D  H  C  N  G  L  Q  P  Y  I  L  Q  *  M :   L  D  N  S  F  H  C  K  N  K  *  G  S  E  *  T  S  N  L  H  G  P  K  V  Q  C  D  L  *  *  R  K  D  *  G  S  R  H  C  K  R  S  C  F  S  R  E  I  *  S  F  S  V  R  V  I  Y  *  *  *  Q  E  G  *  M  V  P  *  C  S  S  L  W  K  C  N  S  Y  *  G  *  *  L  L  L  *  S  *  M  C  M  W  C  T  V  L  F  *  L  F  I  R  S  A  L  T  L  F  M  S  D  V  E  T  L  D  E  E  V  Q  E  R  W  E  D  S  N  V  D  K  *  K  C  Q  T  L  P  K  L  S  Q  C  R  G  E  E  W  G  M  Q  P  C  K  M  *  M  W  T  A  V  L  :  L  V  V  R  W  S  Y  W  L  R  P  H  M  E  *  H  S  R  S  H  L  W  H  L  *  G  R  G  R  G  *  V  D  D  C  Q  K  *  S  L  A  L  Y  S  L  L  *  A  L  Y  G  S  S  *  F  V  G  G  *  S  K  H  E  A  K  T  K  V  *  S  V  E  T  R  S  K  G  I  A  I  K  G  L  Q  L  G  R  K  W  M  *  *  T  P  *  I  E  A  N  S  L  L  F  L  S  S  F  I  L  R  F  *  S  D  A  V  Q  G  *  N  D  T  K  R  *  G  N  K  E  E  P  F  *  K  P  A  A  A  T  *  N  K  R  *  E  T  F  D  V  L  G  R  T  I  C  *  I  S  *  R  *  T  F  G  D  *  N  E  D  H  H  S  L  R  T  N  R  Q  P  L  Q  R  V  V  S  V  H  H  I  *  *  T  S  Y  A  L  F  I  F  A </first_frame>
            <second_frame>  F  T  P  I  K  T  L  Q  K  K  I  Q  K  S  S  F  P  T  K  E  F  Q  E  S  T  N  L  G  I  I  K  A  *  N  C  *  L  F  W  G  F  S  I  F  L  C  G  G  F  *  C  M  *  K  I  M  E  D  Y  S  Y  G  S  S  D  D  D  E  W  D  N  Q  Q  C  N  N  D  D  E  D  D  D  D  G  E  F  L  D  G  F  T  E  I  E  Q  E  R  N  G  I  S  G  K  G  P  S  C  K  :  V  I  R  K  E  T  L  L  A  A  Q  :  K  E  D  L  Q  R  V  M  D  L  L  S  L  K  E  H  H  A  R  S  L  L  I  H  Y  R  W  E  V  D  K  V  F  A  V  L  V  E  R  G  T  E  M  L  Y  A  E  A  G  V  T  L  E  G  K  E  E  H  T  S  T  L  S  T  S  E  V  T  C  Q  I  C  F  E  D  A  P  V  E  K  T  T  V  M  D  C  N  H  I  F  C  N  E   : C  W  T  T  H  F  I  V  K  I  N  E  G  Q  S  K  Q  V  T  C  M  A  Q  K  C  N  V  I  C  D  E  G  K  I  R  D  L  V  T  A  R  D  P  A  L  A  E  K  F  D  R  F  L  L  E  S  Y  I  D  D  N  K  R  V  K  W  C  P  S  V  P  H  C  G  N  A  I  R  I  E  D  D  D  Y  C  C  E  V  E  C  A  C  G  V  Q  F  C  F  N  C  L  S  E  A  H  S  P  C  S  C  L  M  W  K  L  W  M  K  K  C  K  N  D  G  K  T  V  T  W  I  S  E  N  A  K  H  C  P  N  C  H  N  A  V  E  K  N  G  G  C  N  L  V  R  C  R  C  G  Q  P  F  C :   W  L  C  G  G  A  T  G  L  D  H  T  W  S  S  I  R  G  H  T  C  G  I  Y  K  E  G  E  E  D  K  S  T  T  V  R  N  D  L  L  R  Y  T  H  Y  Y  E  R  Y  M  V  H  R  D  S  L  E  A  E  A  N  M  K  Q  K  L  K  F  E  V  L  K  L  E  A  R  E  L  L  S  K  D  F  S  W  V  E  N  G  C  N  R  L  L  E  L  R  R  I  L  S  C  S  Y  P  V  S  F  Y  V  F  D  Q  T  L  F  K  D  E  M  T  Q  K  D  R  E  I  K  K  N  L  F  E  N  L  Q  Q  Q  L  E  I  N  V  E  R  L  S  M  F  L  E  E  P  F  A  K  Y  P  E  D  K  L  L  E  T  R  T  K  I  I  T  L  S  V  L  T  D  N  L  C  K  E  L  *  V  C  I  T  S  N  K  L  A  M  H  Y  L  Y  L   </second_frame>
            <third_frame>   S  L  R  S  K  L  S  K  K  K  S  K  N  L  P  S  P  R  R  N  F  K  N  R  Q  T  *  G  S  S  K  R  K  I  A  N  F  F  G  V  F  R  F  F  S  V  G  G  F  S  V  C  E  K  L  W  R  I  I  A  M  G  A  A  M  M  M  N  G  T  I  N  S  A  I  M  T  M  K  T  M  M  M  V  N  F  L  M  G  L  R  K  L  N  K  R  E  T  E  S  L  E  R  V  L  H  A  R :   *  S  G  K  R  L  F  *  L  H  R :   K  K  T  C  K  E  *  W  T  C  Y  L  *  R  N  I  M  L  E  A  C  L  F  I  T  D  G  K  L  T  R  S  L  R  F  L  L  R  E  G  Q  K  C  Y  M  L  K  R  V  *  H  W  K  G  K  R  N  I  L  P  L  C  R  H  L  K  *  R  V  K  F  A  S  K  M  P  L  L  R  R  P  L  *  W  T  A  T  I  Y  F  A  M  N  :  V  G  Q  L  I  S  L  *  K  *  M  R  V  R  V  N  K  *  L  A  W  P  K  S  A  M  *  S  V  M  K  E  R  L  G  I  S  S  L  Q  E  I  L  L  *  Q  R  N  L  I  V  F  C  *  S  H  I  L  M  I  T  R  G  L  N  G  A  L  V  F  L  I  V  E  M  Q  F  V  L  R  M  M  I  T  A  V  K  L  N  V  H  V  V  Y  S  S  V  L  I  V  Y  Q  K  R  T  H  L  V  H  V  *  C  G  N  F  G  *  R  S  A  R  T  M  G  R  Q  *  R  G  *  V  K  M  P  N  I  A  Q  T  V  T  M  P  W  R  R  M  G  D  A  T  L  *  D  V  D  V  D  S  R  F   : V  G  C  A  V  E  L  L  A  *  T  T  H  G  V  A  F  E  V  T  L  V  A  F  I  R  K  G  K  R  I  S  R  R  L  S  E  M  I  S  C  A  I  L  I  I  M  S  A  I  W  F  I  V  I  R  W  R  L  K  Q  T  *  S  K  N  *  S  L  K  C  *  N  S  K  Q  G  N  C  Y  Q  R  T  S  A  G  *  K  M  D  V  I  D  S  L  N  *  G  E  F  S  P  V  P  I  Q  F  H  F  T  F  L  I  R  R  C  S  R  M  K  *  H  K  K  I  G  K  *  R  R  T  F  L  K  T  C  S  S  N  L  K  *  T  L  R  D  F  R  C  S  W  K  N  H  L  L  N  I  L  K  I  N  F  W  R  L  E  R  R  S  S  L  S  P  Y  *  Q  T  T  S  A  K  S  C  K  C  A  S  H  L  I  N  *  L  C  I  I  Y  I  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0079B07.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10705" stop="10541"/>
                    <exon start="9564" stop="9532"/>
                    <exon start="9448" stop="9169"/>
                    <exon start="8726" stop="8243"/>
                    <exon start="7473" stop="6921"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1512</number_coding_nucleotides>
                  <number_encoded_amino_acids>504</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIMEDYSYGSSDDDEWDNQQCNNDDEDDDDGEFLDGFTEIEQERNGISGKGPSCKVIRKETLLAAQKEDLQRVMDLLSLKEHHARSLLIHYRWEVDKVFAVLVERGTEMLYAEAGVTLEGKEEHTSTLSTSEVTCQICFEDAPVEKTTVMDCNHIFCNECWTTHFIVKINEGQSKQVTCMAQKCNVICDEGKIRDLVTARDPALAEKFDRFLLESYIDDNKRVKWCPSVPHCGNAIRIEDDDYCCEVECACGVQFCFNCLSEAHSPCSCLMWKLWMKKCKNDGKTVTWISENAKHCPNCHNAVEKNGGCNLVRCRCGQPFCWLCGGATGLDHTWSSIRGHTCGIYKEGEEDKSTTVRNDLLRYTHYYERYMVHRDSLEAEANMKQKLKFEVLKLEARELLSKDFSWVENGCNRLLELRRILSCSYPVSFYVFDQTLFKDEMTQKDREIKKNLFENLQQQLEINVERLSMFLEEPFAKYPEDKLLETRTKIITLSVLTDNLCKEL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="14914" PGL_stop="15319"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14914" e_stop="15319"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.921"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.921">
            <gDNA_exon_boundary e_start="14914" e_stop="15319" e_length="406"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14914" stop="15319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437089" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGCCCCGTGCCAGAGATTCAACGGACAAATCTTGGGAATGTGGTTTTGCTGCTCAAGTCTCTCAAAATTCAGAACTTGTTGGATTTTGATTTTATGGATCCACCTCCTCAAGATAACATCCTTAACTCCATGTATCAGTTGTGGTTACTAGGTGCACTGAATGATGTTGGTGATTTAACGGACCTTGGACGAAAAATGGTGAAGTTCCCGTTGGACCCTGCCCTTGCCAAATTGCTCTGATGGGGGAACAACTAGAATGCTTAAATGAGGTTCTGACAATTGTTTCTATGCTTTCAGTGCCTTCAGTTTTCTTTCGACCTAAGGATAGGGAAGCGGAAAGTGATGCTGCTAGGGAAAAGTTTTTTGTGCCAGAATCTGATCACCTTACATTGCTTAATGTTTAC</gDNA_template>
            <first_frame> K  A  P  C  Q  R  F  N  G  Q  I  L  G  M  W  F  C  C  S  S  L  S  K  F  R  T  C  W  I  L  I  L  W  I  H  L  L  K  I  T  S  L  T  P  C  I  S  C  G  Y  *  V  H  *  M  M  L  V  I  *  R  T  L  D  E  K  W  *  S  S  R  W  T  L  P  L  P  N  C  S  D  G  G  T  T  R  M  L  K  *  G  S  D  N  C  F  Y  A  F  S  A  F  S  F  L  S  T  *  G  *  G  S  G  K  *  C  C  *  G  K  V  F  C  A  R  I  *  S  P  Y  I  A  *  C  L  </first_frame>
            <second_frame>  K  P  R  A  R  D  S  T  D  K  S  W  E  C  G  F  A  A  Q  V  S  Q  N  S  E  L  V  G  F  *  F  Y  G  S  T  S  S  R  *  H  P  *  L  H  V  S  V  V  V  T  R  C  T  E  *  C  W  *  F  N  G  P  W  T  K  N  G  E  V  P  V  G  P  C  P  C  Q  I  A  L  M  G  E  Q  L  E  C  L  N  E  V  L  T  I  V  S  M  L  S  V  P  S  V  F  F  R  P  K  D  R  E  A  E  S  D  A  A  R  E  K  F  F  V  P  E  S  D  H  L  T  L  L  N  V  Y </second_frame>
            <third_frame>   S  P  V  P  E  I  Q  R  T  N  L  G  N  V  V  L  L  L  K  S  L  K  I  Q  N  L  L  D  F  D  F  M  D  P  P  P  Q  D  N  I  L  N  S  M  Y  Q  L  W  L  L  G  A  L  N  D  V  G  D  L  T  D  L  G  R  K  M  V  K  F  P  L  D  P  A  L  A  K  L  L  *  W  G  N  N  *  N  A  *  M  R  F  *  Q  L  F  L  C  F  Q  C  L  Q  F  S  F  D  L  R  I  G  K  R  K  V  M  L  L  G  K  S  F  L  C  Q  N  L  I  T  L  H  C  L  M  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0079B07.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14916" stop="15155"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPVPEIQRTNLGNVVLLLKSLKIQNLLDFDFMDPPPQDNILNSMYQLWLLGALNDVGDLTDLGRKMVKFPLDPALAKLL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0079B07.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15089" stop="15319"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FNGPWTKNGEVPVGPCPCQIALMGEQLECLNEVLTIVSMLSVPSVFFRPKDREAESDAAREKFFVPESDHLTLLNVY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="16179" PGL_stop="17834"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16287" e_stop="16460"/>
            <exon e_start="16780" e_stop="17834"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.950" acc_prob="0.841" e_score="0.902"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="16287" e_stop="16460" e_length="174"/>
          </exon>
          <intron i_serial="1" don_prob="0.950" acc_prob="0.841">
            <gDNA_intron_boundary i_start="16461" i_stop="16779" i_length="319"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16780" e_stop="17834" e_length="1055"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16287" stop="16460"/>
              <exon start="16780" stop="17333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17146" stop="17834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17146" stop="17793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17146" stop="17678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17190" stop="17677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17190" stop="17509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17256" stop="17477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443939" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTGGAAGGGGAGCAAATGTTGATGTACACACTGAATGAGGCATCGAGGAACGTCATGGCATCGATGATAAAGTTGATGCTCTGAAGAGCATAATCAAGATCAGCGTCAGTAGTTCAATAGGTATCACATGGTGGTCGAGGGCTCATCAACAGTCAATAGAACTTAATATACAG : CTACTGCAGCAGAAAGCAGAATTTCTCCACTTTCCTCTACAATTACAGCATCTTTGCCGGTGACTAATTCCAACAGGACAACTCCAAAGACATAAATGTCCATCTTTGAAGTCACTGTCCCTCTCTCAGCGTACTCAGGAGCCATGTAACCTGTTGTCCCCACAAGCTCCCAACTCATGCCTGATGTATCCGTTTCTTTAGCAACACTGAAGTTTGTAATCTTTGCTCGTATGTTGTTGTCGAGGAGAATGTTTCTACTGTTGATGTTCTTGTGGATGTAGCCTGGTTTGGTAAAGCTGTGAAGATAATGAAGTCCATTAGCTACATCCAACACAATCTGAATCCTTTTTTTCCAGCTTATGGTATCTTGAGACTTGGTTCTGATCAGCCATTCCCTGAGAGAGCCATTTTGCATGTATTCAAAGACAAGAAAGAAGCAACCTTTATGTTCACAATAGCCACAAAGCTTTATTAGATTGAAGTGATTGATCTTATGTAGTATGTTCACTTCTCTAGATACATCCATGATCGCCATTTTGACTGCTAAGGTTTCCCCTTTAAACCCTCCCCAGTATACAGATCCCTTTATCCGGTTCTTGGAGTCAAAGTTTTGCGTAGCATGCTTCAATTCTTTAAACTTAAAAACCTTAGGGACATGATCTATGTTCGCGATCTCCACGAGGATATCTTCATGACTTGAAGACCTCCTCGGAAATTTGCTATCTCTTTTCTTAAACAAAGCAAGAAGGATGACCCAAGAAACCACAAAGCCTGTTGCAACTCCACTACCTATGTAAAGATTTCTCTTTGATTTTCCCTTTGAAGCATTAGCTGCAGATGGAGGTGAAAACGACCTAATAGGTTTTCTATAATTCTCATTTCCGGTATCTAAATTTGATGGTTCAGAAGGCAGGGGAATTAGAATGGTTGTAAAAGGATACAAAACAGAATTTTCATCCAAGAATCCATTTGCTTCGATTATGTTCCTTCCATTAACTTTAAATCTTTTGCCGACTGTAAGGATGTCATCGCCAACGTTTATTGAATAAGTCATC</gDNA_template>
            <first_frame> I  G  R  G  A  N  V  D  V  H  T  E  *  G  I  E  E  R  H  G  I  D  D  K  V  D  A  L  K  S  I  I  K  I  S  V  S  S  S  I  G  I  T  W  W  S  R  A  H  Q  Q  S  I  E  L  N  I  Q  :  L  L  Q  Q  K  A  E  F  L  H  F  P  L  Q  L  Q  H  L  C  R  *  L  I  P  T  G  Q  L  Q  R  H  K  C  P  S  L  K  S  L  S  L  S  Q  R  T  Q  E  P  C  N  L  L  S  P  Q  A  P  N  S  C  L  M  Y  P  F  L  *  Q  H  *  S  L  *  S  L  L  V  C  C  C  R  G  E  C  F  Y  C  *  C  S  C  G  C  S  L  V  W  *  S  C  E  D  N  E  V  H  *  L  H  P  T  Q  S  E  S  F  F  S  S  L  W  Y  L  E  T  W  F  *  S  A  I  P  *  E  S  H  F  A  C  I  Q  R  Q  E  R  S  N  L  Y  V  H  N  S  H  K  A  L  L  D  *  S  D  *  S  Y  V  V  C  S  L  L  *  I  H  P  *  S  P  F  *  L  L  R  F  P  L  *  T  L  P  S  I  Q  I  P  L  S  G  S  W  S  Q  S  F  A  *  H  A  S  I  L  *  T  *  K  P  *  G  H  D  L  C  S  R  S  P  R  G  Y  L  H  D  L  K  T  S  S  E  I  C  Y  L  F  S  *  T  K  Q  E  G  *  P  K  K  P  Q  S  L  L  Q  L  H  Y  L  C  K  D  F  S  L  I  F  P  L  K  H  *  L  Q  M  E  V  K  T  T  *  *  V  F  Y  N  S  H  F  R  Y  L  N  L  M  V  Q  K  A  G  E  L  E  W  L  *  K  D  T  K  Q  N  F  H  P  R  I  H  L  L  R  L  C  S  F  H  *  L  *  I  F  C  R  L  *  G  C  H  R  Q  R  L  L  N  K  S   </first_frame>
            <second_frame>  L  E  G  E  Q  M  L  M  Y  T  L  N  E  A  S  R  N  V  M  A  S  M  I  K  L  M  L  *  R  A  *  S  R  S  A  S  V  V  Q  *  V  S  H  G  G  R  G  L  I  N  S  Q  *  N  L  I  Y  S :   Y  C  S  R  K  Q  N  F  S  T  F  L  Y  N  Y  S  I  F  A  G  D  *  F  Q  Q  D  N  S  K  D  I  N  V  H  L  *  S  H  C  P  S  L  S  V  L  R  S  H  V  T  C  C  P  H  K  L  P  T  H  A  *  C  I  R  F  F  S  N  T  E  V  C  N  L  C  S  Y  V  V  V  E  E  N  V  S  T  V  D  V  L  V  D  V  A  W  F  G  K  A  V  K  I  M  K  S  I  S  Y  I  Q  H  N  L  N  P  F  F  P  A  Y  G  I  L  R  L  G  S  D  Q  P  F  P  E  R  A  I  L  H  V  F  K  D  K  K  E  A  T  F  M  F  T  I  A  T  K  L  Y  *  I  E  V  I  D  L  M  *  Y  V  H  F  S  R  Y  I  H  D  R  H  F  D  C  *  G  F  P  F  K  P  S  P  V  Y  R  S  L  Y  P  V  L  G  V  K  V  L  R  S  M  L  Q  F  F  K  L  K  N  L  R  D  M  I  Y  V  R  D  L  H  E  D  I  F  M  T  *  R  P  P  R  K  F  A  I  S  F  L  K  Q  S  K  K  D  D  P  R  N  H  K  A  C  C  N  S  T  T  Y  V  K  I  S  L  *  F  S  L  *  S  I  S  C  R  W  R  *  K  R  P  N  R  F  S  I  I  L  I  S  G  I  *  I  *  W  F  R  R  Q  G  N  *  N  G  C  K  R  I  Q  N  R  I  F  I  Q  E  S  I  C  F  D  Y  V  P  S  I  N  F  K  S  F  A  D  C  K  D  V  I  A  N  V  Y  *  I  S  H  </second_frame>
            <third_frame>   W  K  G  S  K  C  *  C  T  H  *  M  R  H  R  G  T  S  W  H  R  *  *  S  *  C  S  E  E  H  N  Q  D  Q  R  Q  *  F  N  R  Y  H  M  V  V  E  G  S  S  T  V  N  R  T  *  Y  T   : A  T  A  A  E  S  R  I  S  P  L  S  S  T  I  T  A  S  L  P  V  T  N  S  N  R  T  T  P  K  T  *  M  S  I  F  E  V  T  V  P  L  S  A  Y  S  G  A  M  *  P  V  V  P  T  S  S  Q  L  M  P  D  V  S  V  S  L  A  T  L  K  F  V  I  F  A  R  M  L  L  S  R  R  M  F  L  L  L  M  F  L  W  M  *  P  G  L  V  K  L  *  R  *  *  S  P  L  A  T  S  N  T  I  *  I  L  F  F  Q  L  M  V  S  *  D  L  V  L  I  S  H  S  L  R  E  P  F  C  M  Y  S  K  T  R  K  K  Q  P  L  C  S  Q  *  P  Q  S  F  I  R  L  K  *  L  I  L  C  S  M  F  T  S  L  D  T  S  M  I  A  I  L  T  A  K  V  S  P  L  N  P  P  Q  Y  T  D  P  F  I  R  F  L  E  S  K  F  C  V  A  C  F  N  S  L  N  L  K  T  L  G  T  *  S  M  F  A  I  S  T  R  I  S  S  *  L  E  D  L  L  G  N  L  L  S  L  F  L  N  K  A  R  R  M  T  Q  E  T  T  K  P  V  A  T  P  L  P  M  *  R  F  L  F  D  F  P  F  E  A  L  A  A  D  G  G  E  N  D  L  I  G  F  L  *  F  S  F  P  V  S  K  F  D  G  S  E  G  R  G  I  R  M  V  V  K  G  Y  K  T  E  F  S  S  K  N  P  F  A  S  I  M  F  L  P  L  T  L  N  L  L  P  T  V  R  M  S  S  P  T  F  I  E  *  V  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0079B07.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16964" stop="17254"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CIRFFSNTEVCNLCSYVVVEENVSTVDVLVDVAWFGKAVKIMKSISYIQHNLNPFFPAYGILRLGSDQPFPERAILHVFKDKKEATFMFTIATKLY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0079B07.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16326" stop="16460"/>
                    <exon start="16780" stop="16842"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GIEERHGIDDKVDALKSIIKISVSSSIGITWWSRAHQQSIELNIQLLQQKAEFLHFPLQLQHLCR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="16179" e_stop="16460"/>
            <exon e_start="16607" e_stop="16664"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.950" acc_prob="0.852" e_score="0.993"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="16179" e_stop="16460" e_length="282"/>
          </exon>
          <intron i_serial="1" don_prob="0.950" acc_prob="0.852">
            <gDNA_intron_boundary i_start="16461" i_stop="16606" i_length="146"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16607" e_stop="16664" e_length="58"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16179" stop="16460"/>
              <exon start="16607" stop="16664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223337" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16179" stop="16460"/>
              <exon start="16607" stop="16655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223560" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCTATTTTTGCCGTTTTCTTTTGATTATCCTGATTGCATTATGTCAATGTTTAAGCTTTGTATCACACATGTATTAATGTACTTTTAATACATTTTTGAACAATGTATTGGAAGGGGAGCAAATGTTGATGTACACACTGAATGAGGCATCGAGGAACGTCATGGCATCGATGATAAAGTTGATGCTCTGAAGAGCATAATCAAGATCAGCGTCAGTAGTTCAATAGGTATCACATGGTGGTCGAGGGCTCATCAACAGTCAATAGAACTTAATATACAG : TAAACATGATACTGTCTCTTCCATGCTTGGACGATTTGTTGGTTCTCGAGTCAAGCAT</gDNA_template>
            <first_frame> F  L  F  L  P  F  S  F  D  Y  P  D  C  I  M  S  M  F  K  L  C  I  T  H  V  L  M  Y  F  *  Y  I  F  E  Q  C  I  G  R  G  A  N  V  D  V  H  T  E  *  G  I  E  E  R  H  G  I  D  D  K  V  D  A  L  K  S  I  I  K  I  S  V  S  S  S  I  G  I  T  W  W  S  R  A  H  Q  Q  S  I  E  L  N  I  Q  :  *  T  *  Y  C  L  F  H  A  W  T  I  C  W  F  S  S  Q  A  </first_frame>
            <second_frame>  F  Y  F  C  R  F  L  L  I  I  L  I  A  L  C  Q  C  L  S  F  V  S  H  M  Y  *  C  T  F  N  T  F  L  N  N  V  L  E  G  E  Q  M  L  M  Y  T  L  N  E  A  S  R  N  V  M  A  S  M  I  K  L  M  L  *  R  A  *  S  R  S  A  S  V  V  Q  *  V  S  H  G  G  R  G  L  I  N  S  Q  *  N  L  I  Y  S :   K  H  D  T  V  S  S  M  L  G  R  F  V  G  S  R  V  K  H </second_frame>
            <third_frame>   S  I  F  A  V  F  F  *  L  S  *  L  H  Y  V  N  V  *  A  L  Y  H  T  C  I  N  V  L  L  I  H  F  *  T  M  Y  W  K  G  S  K  C  *  C  T  H  *  M  R  H  R  G  T  S  W  H  R  *  *  S  *  C  S  E  E  H  N  Q  D  Q  R  Q  *  F  N  R  Y  H  M  V  V  E  G  S  S  T  V  N  R  T  *  Y  T   : V  N  M  I  L  S  L  P  C  L  D  D  L  L  V  L  E  S  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0079B07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="21910" PGL_stop="26853"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21981" e_stop="22094"/>
            <exon e_start="24532" e_stop="24646"/>
            <exon e_start="25769" e_stop="25877"/>
            <exon e_start="26050" e_stop="26128"/>
            <exon e_start="26239" e_stop="26355"/>
            <exon e_start="26435" e_stop="26853"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.941" acc_prob="1.000" e_score="0.912"/>
          <exon-intron don_prob="1.000" acc_prob="0.914" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.905" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="21981" e_stop="22094" e_length="114"/>
          </exon>
          <intron i_serial="1" don_prob="0.941" acc_prob="1.000">
            <gDNA_intron_boundary i_start="22095" i_stop="24531" i_length="2437"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24532" e_stop="24646" e_length="115"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.914">
            <gDNA_intron_boundary i_start="24647" i_stop="25768" i_length="1122"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="25769" e_stop="25877" e_length="109"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.905">
            <gDNA_intron_boundary i_start="25878" i_stop="26049" i_length="172"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="26050" e_stop="26128" e_length="79"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.977">
            <gDNA_intron_boundary i_start="26129" i_stop="26238" i_length="110"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="26239" e_stop="26355" e_length="117"/>
          </exon>
          <intron i_serial="5" don_prob="0.976" acc_prob="0.999">
            <gDNA_intron_boundary i_start="26356" i_stop="26434" i_length="79"/>
          </intron>
          <exon e_serial="6" e_score="0.986">
            <gDNA_exon_boundary e_start="26435" e_stop="26853" e_length="419"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21981" stop="22094"/>
              <exon start="24532" stop="24646"/>
              <exon start="25769" stop="25877"/>
              <exon start="26050" stop="26128"/>
              <exon start="26239" stop="26355"/>
              <exon start="26435" stop="26851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22016" stop="22094"/>
              <exon start="24532" stop="24646"/>
              <exon start="25769" stop="25877"/>
              <exon start="26050" stop="26128"/>
              <exon start="26239" stop="26355"/>
              <exon start="26435" stop="26605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22016" stop="22094"/>
              <exon start="24532" stop="24646"/>
              <exon start="25769" stop="25877"/>
              <exon start="26050" stop="26128"/>
              <exon start="26239" stop="26355"/>
              <exon start="26435" stop="26500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22016" stop="22094"/>
              <exon start="24532" stop="24646"/>
              <exon start="25769" stop="25877"/>
              <exon start="26050" stop="26128"/>
              <exon start="26239" stop="26355"/>
              <exon start="26435" stop="26496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22016" stop="22094"/>
              <exon start="24532" stop="24646"/>
              <exon start="25769" stop="25877"/>
              <exon start="26050" stop="26128"/>
              <exon start="26239" stop="26335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25786" stop="25877"/>
              <exon start="26050" stop="26128"/>
              <exon start="26239" stop="26355"/>
              <exon start="26435" stop="26719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297718" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26055" stop="26128"/>
              <exon start="26239" stop="26355"/>
              <exon start="26435" stop="26853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397756" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATTCTCTTCTACTATTTTTCTCTATAAATATAGAGACTCCATCACTATTCTTCAATCTTCTTTTTGCAGATTCTCATTTCAGCAGCAGCAGGAGGAGGTTCACATAATTTTG : GGAACCATGATTAAGTTGTTTAAAGTGAAGGAGAAACAGAGAGAGCTTGCTGAAAATGCAAATGGAAAGCCACCAATTAAGAAACAAAGTGCAGGAGAGCTGCGTCTTCATAAAG : ATATCAGTGAACTAAATCTACCTGAAACGTGTAGCATATCATTCCCTAACGGAAAAGATGACCTCATGAACTTTGAAGTCACCATTCGGCCTGATGAAGGATATTATGT : GGGTGGAACTTTTGTCTTCTCTTTCAGCATTTCTTCTATTTATCCTCATGAGGCTCCAAAGGTCAAGTGCAAGACAAAG : GTTTACCACCCGAATATTGACTTGGAAGGTAATGTGTGTCTCAACATTCTTCGAGAAGACTGGAAACCTGTGCTCAACATCAACACAATAATCTATGGCTTGTATCATTTGTTCACG : GAACCCAATCACGAGGATCCCCTCAATCATGAAGCAGCTGCTGTGTTGAGTGACAACCCCAGCTTGTTCGAGTCCAATGTCAGAAGGGCAATGTCTGGAGGATATGTAGGAGAAACGTTCTTCCAACGCTGCATATAAACGTCTCAGATGCAGAATCGATTAGTTGATGATGCTTACACCAGAAGTTGAAGGCTCTGAAAGTCTGTGAAGTTGGGACCAGGAAGAACCATTTTTACATGTGAAAAAGATTTGAGTGCAAAAATGTTATTAGATATTTGCAAAACTTAAAACCTGCAGAACGTTTTCTGTATGTAAGTGTTAAAACTGAAGCTGTTAAGAGACCCTTTGCCTGGATGAATTTATGTACAATCTGAACTTATGTTTTCGCGATCTTGCGCTTCAATTATCGTATTATTTAT</gDNA_template>
            <first_frame> R  F  S  S  T  I  F  L  Y  K  Y  R  D  S  I  T  I  L  Q  S  S  F  C  R  F  S  F  Q  Q  Q  Q  E  E  V  H  I  I  L  :  G  T  M  I  K  L  F  K  V  K  E  K  Q  R  E  L  A  E  N  A  N  G  K  P  P  I  K  K  Q  S  A  G  E  L  R  L  H  K   : D  I  S  E  L  N  L  P  E  T  C  S  I  S  F  P  N  G  K  D  D  L  M  N  F  E  V  T  I  R  P  D  E  G  Y  Y  V :   G  G  T  F  V  F  S  F  S  I  S  S  I  Y  P  H  E  A  P  K  V  K  C  K  T  K  :  V  Y  H  P  N  I  D  L  E  G  N  V  C  L  N  I  L  R  E  D  W  K  P  V  L  N  I  N  T  I  I  Y  G  L  Y  H  L  F  T  :  E  P  N  H  E  D  P  L  N  H  E  A  A  A  V  L  S  D  N  P  S  L  F  E  S  N  V  R  R  A  M  S  G  G  Y  V  G  E  T  F  F  Q  R  C  I  *  T  S  Q  M  Q  N  R  L  V  D  D  A  Y  T  R  S  *  R  L  *  K  S  V  K  L  G  P  G  R  T  I  F  T  C  E  K  D  L  S  A  K  M  L  L  D  I  C  K  T  *  N  L  Q  N  V  F  C  M  *  V  L  K  L  K  L  L  R  D  P  L  P  G  *  I  Y  V  Q  S  E  L  M  F  S  R  S  C  A  S  I  I  V  L  F   </first_frame>
            <second_frame>  D  S  L  L  L  F  F  S  I  N  I  E  T  P  S  L  F  F  N  L  L  F  A  D  S  H  F  S  S  S  R  R  R  F  T  *  F  W :   E  P  *  L  S  C  L  K  *  R  R  N  R  E  S  L  L  K  M  Q  M  E  S  H  Q  L  R  N  K  V  Q  E  S  C  V  F  I  K  :  I  S  V  N  *  I  Y  L  K  R  V  A  Y  H  S  L  T  E  K  M  T  S  *  T  L  K  S  P  F  G  L  M  K  D  I  M   : W  V  E  L  L  S  S  L  S  A  F  L  L  F  I  L  M  R  L  Q  R  S  S  A  R  Q  R :   F  T  T  R  I  L  T  W  K  V  M  C  V  S  T  F  F  E  K  T  G  N  L  C  S  T  S  T  Q  *  S  M  A  C  I  I  C  S  R :   N  P  I  T  R  I  P  S  I  M  K  Q  L  L  C  *  V  T  T  P  A  C  S  S  P  M  S  E  G  Q  C  L  E  D  M  *  E  K  R  S  S  N  A  A  Y  K  R  L  R  C  R  I  D  *  L  M  M  L  T  P  E  V  E  G  S  E  S  L  *  S  W  D  Q  E  E  P  F  L  H  V  K  K  I  *  V  Q  K  C  Y  *  I  F  A  K  L  K  T  C  R  T  F  S  V  C  K  C  *  N  *  S  C  *  E  T  L  C  L  D  E  F  M  Y  N  L  N  L  C  F  R  D  L  A  L  Q  L  S  Y  Y  L  </second_frame>
            <third_frame>   I  L  F  Y  Y  F  S  L  *  I  *  R  L  H  H  Y  S  S  I  F  F  L  Q  I  L  I  S  A  A  A  G  G  G  S  H  N  F   : G  N  H  D  *  V  V  *  S  E  G  E  T  E  R  A  C  *  K  C  K  W  K  A  T  N  *  E  T  K  C  R  R  A  A  S  S  *  R :   Y  Q  *  T  K  S  T  *  N  V  *  H  I  I  P  *  R  K  R  *  P  H  E  L  *  S  H  H  S  A  *  *  R  I  L  C  :  G  W  N  F  C  L  L  F  Q  H  F  F  Y  L  S  S  *  G  S  K  G  Q  V  Q  D  K   : G  L  P  P  E  Y  *  L  G  R  *  C  V  S  Q  H  S  S  R  R  L  E  T  C  A  Q  H  Q  H  N  N  L  W  L  V  S  F  V  H   : G  T  Q  S  R  G  S  P  Q  S  *  S  S  C  C  V  E  *  Q  P  Q  L  V  R  V  Q  C  Q  K  G  N  V  W  R  I  C  R  R  N  V  L  P  T  L  H  I  N  V  S  D  A  E  S  I  S  *  *  C  L  H  Q  K  L  K  A  L  K  V  C  E  V  G  T  R  K  N  H  F  Y  M  *  K  R  F  E  C  K  N  V  I  R  Y  L  Q  N  L  K  P  A  E  R  F  L  Y  V  S  V  K  T  E  A  V  K  R  P  F  A  W  M  N  L  C  T  I  *  T  Y  V  F  A  I  L  R  F  N  Y  R  I  I  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0079B07.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21981" stop="22094"/>
                    <exon start="24532" stop="24646"/>
                    <exon start="25769" stop="25877"/>
                    <exon start="26050" stop="26128"/>
                    <exon start="26239" stop="26355"/>
                    <exon start="26435" stop="26572"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>669</number_coding_nucleotides>
                  <number_encoded_amino_acids>223</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFSSTIFLYKYRDSITILQSSFCRFSFQQQQEEVHIILGTMIKLFKVKEKQRELAENANGKPPIKKQSAGELRLHKDISELNLPETCSISFPNGKDDLMNFEVTIRPDEGYYVGGTFVFSFSISSIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHEAAAVLSDNPSLFESNVRRAMSGGYVGETFFQRCI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="21910" e_stop="21937"/>
            <exon e_start="22052" e_stop="22094"/>
            <exon e_start="24532" e_stop="24646"/>
            <exon e_start="25769" e_stop="25877"/>
            <exon e_start="26050" e_stop="26128"/>
            <exon e_start="26239" e_stop="26355"/>
            <exon e_start="26435" e_stop="26853"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.914" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.905" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="21910" e_stop="21937" e_length="28"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="21938" i_stop="22051" i_length="114"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22052" e_stop="22094" e_length="43"/>
          </exon>
          <intron i_serial="2" don_prob="0.941" acc_prob="1.000">
            <gDNA_intron_boundary i_start="22095" i_stop="24531" i_length="2437"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24532" e_stop="24646" e_length="115"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.914">
            <gDNA_intron_boundary i_start="24647" i_stop="25768" i_length="1122"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="25769" e_stop="25877" e_length="109"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.905">
            <gDNA_intron_boundary i_start="25878" i_stop="26049" i_length="172"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="26050" e_stop="26128" e_length="79"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.977">
            <gDNA_intron_boundary i_start="26129" i_stop="26238" i_length="110"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="26239" e_stop="26355" e_length="117"/>
          </exon>
          <intron i_serial="6" don_prob="0.976" acc_prob="0.999">
            <gDNA_intron_boundary i_start="26356" i_stop="26434" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="0.986">
            <gDNA_exon_boundary e_start="26435" e_stop="26853" e_length="419"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21910" stop="21937"/>
              <exon start="22052" stop="22094"/>
              <exon start="24532" stop="24646"/>
              <exon start="25769" stop="25877"/>
              <exon start="26050" stop="26128"/>
              <exon start="26239" stop="26355"/>
              <exon start="26435" stop="26445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21911" stop="21937"/>
              <exon start="22052" stop="22094"/>
              <exon start="24532" stop="24646"/>
              <exon start="25769" stop="25877"/>
              <exon start="26050" stop="26128"/>
              <exon start="26239" stop="26355"/>
              <exon start="26435" stop="26611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25786" stop="25877"/>
              <exon start="26050" stop="26128"/>
              <exon start="26239" stop="26355"/>
              <exon start="26435" stop="26719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297718" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26055" stop="26128"/>
              <exon start="26239" stop="26355"/>
              <exon start="26435" stop="26853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397756" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGACAATAGAGGATACCTTTCTATTAAA : ATTCTCATTTCAGCAGCAGCAGGAGGAGGTTCACATAATTTTG : GGAACCATGATTAAGTTGTTTAAAGTGAAGGAGAAACAGAGAGAGCTTGCTGAAAATGCAAATGGAAAGCCACCAATTAAGAAACAAAGTGCAGGAGAGCTGCGTCTTCATAAAG : ATATCAGTGAACTAAATCTACCTGAAACGTGTAGCATATCATTCCCTAACGGAAAAGATGACCTCATGAACTTTGAAGTCACCATTCGGCCTGATGAAGGATATTATGT : GGGTGGAACTTTTGTCTTCTCTTTCAGCATTTCTTCTATTTATCCTCATGAGGCTCCAAAGGTCAAGTGCAAGACAAAG : GTTTACCACCCGAATATTGACTTGGAAGGTAATGTGTGTCTCAACATTCTTCGAGAAGACTGGAAACCTGTGCTCAACATCAACACAATAATCTATGGCTTGTATCATTTGTTCACG : GAACCCAATCACGAGGATCCCCTCAATCATGAAGCAGCTGCTGTGTTGAGTGACAACCCCAGCTTGTTCGAGTCCAATGTCAGAAGGGCAATGTCTGGAGGATATGTAGGAGAAACGTTCTTCCAACGCTGCATATAAACGTCTCAGATGCAGAATCGATTAGTTGATGATGCTTACACCAGAAGTTGAAGGCTCTGAAAGTCTGTGAAGTTGGGACCAGGAAGAACCATTTTTACATGTGAAAAAGATTTGAGTGCAAAAATGTTATTAGATATTTGCAAAACTTAAAACCTGCAGAACGTTTTCTGTATGTAAGTGTTAAAACTGAAGCTGTTAAGAGACCCTTTGCCTGGATGAATTTATGTACAATCTGAACTTATGTTTTCGCGATCTTGCGCTTCAATTATCGTATTATTTAT</gDNA_template>
            <first_frame> R  Q  *  R  I  P  F  Y  *   : N  S  H  F  S  S  S  R  R  R  F  T  *  F  W :   E  P  *  L  S  C  L  K  *  R  R  N  R  E  S  L  L  K  M  Q  M  E  S  H  Q  L  R  N  K  V  Q  E  S  C  V  F  I  K  :  I  S  V  N  *  I  Y  L  K  R  V  A  Y  H  S  L  T  E  K  M  T  S  *  T  L  K  S  P  F  G  L  M  K  D  I  M   : W  V  E  L  L  S  S  L  S  A  F  L  L  F  I  L  M  R  L  Q  R  S  S  A  R  Q  R :   F  T  T  R  I  L  T  W  K  V  M  C  V  S  T  F  F  E  K  T  G  N  L  C  S  T  S  T  Q  *  S  M  A  C  I  I  C  S  R :   N  P  I  T  R  I  P  S  I  M  K  Q  L  L  C  *  V  T  T  P  A  C  S  S  P  M  S  E  G  Q  C  L  E  D  M  *  E  K  R  S  S  N  A  A  Y  K  R  L  R  C  R  I  D  *  L  M  M  L  T  P  E  V  E  G  S  E  S  L  *  S  W  D  Q  E  E  P  F  L  H  V  K  K  I  *  V  Q  K  C  Y  *  I  F  A  K  L  K  T  C  R  T  F  S  V  C  K  C  *  N  *  S  C  *  E  T  L  C  L  D  E  F  M  Y  N  L  N  L  C  F  R  D  L  A  L  Q  L  S  Y  Y  L  </first_frame>
            <second_frame>  D  N  R  G  Y  L  S  I  K  :  I  L  I  S  A  A  A  G  G  G  S  H  N  F   : G  N  H  D  *  V  V  *  S  E  G  E  T  E  R  A  C  *  K  C  K  W  K  A  T  N  *  E  T  K  C  R  R  A  A  S  S  *  R :   Y  Q  *  T  K  S  T  *  N  V  *  H  I  I  P  *  R  K  R  *  P  H  E  L  *  S  H  H  S  A  *  *  R  I  L  C  :  G  W  N  F  C  L  L  F  Q  H  F  F  Y  L  S  S  *  G  S  K  G  Q  V  Q  D  K   : G  L  P  P  E  Y  *  L  G  R  *  C  V  S  Q  H  S  S  R  R  L  E  T  C  A  Q  H  Q  H  N  N  L  W  L  V  S  F  V  H   : G  T  Q  S  R  G  S  P  Q  S  *  S  S  C  C  V  E  *  Q  P  Q  L  V  R  V  Q  C  Q  K  G  N  V  W  R  I  C  R  R  N  V  L  P  T  L  H  I  N  V  S  D  A  E  S  I  S  *  *  C  L  H  Q  K  L  K  A  L  K  V  C  E  V  G  T  R  K  N  H  F  Y  M  *  K  R  F  E  C  K  N  V  I  R  Y  L  Q  N  L  K  P  A  E  R  F  L  Y  V  S  V  K  T  E  A  V  K  R  P  F  A  W  M  N  L  C  T  I  *  T  Y  V  F  A  I  L  R  F  N  Y  R  I  I  Y </second_frame>
            <third_frame>   T  I  E  D  T  F  L  L  K :   F  S  F  Q  Q  Q  Q  E  E  V  H  I  I  L  :  G  T  M  I  K  L  F  K  V  K  E  K  Q  R  E  L  A  E  N  A  N  G  K  P  P  I  K  K  Q  S  A  G  E  L  R  L  H  K   : D  I  S  E  L  N  L  P  E  T  C  S  I  S  F  P  N  G  K  D  D  L  M  N  F  E  V  T  I  R  P  D  E  G  Y  Y  V :   G  G  T  F  V  F  S  F  S  I  S  S  I  Y  P  H  E  A  P  K  V  K  C  K  T  K  :  V  Y  H  P  N  I  D  L  E  G  N  V  C  L  N  I  L  R  E  D  W  K  P  V  L  N  I  N  T  I  I  Y  G  L  Y  H  L  F  T  :  E  P  N  H  E  D  P  L  N  H  E  A  A  A  V  L  S  D  N  P  S  L  F  E  S  N  V  R  R  A  M  S  G  G  Y  V  G  E  T  F  F  Q  R  C  I  *  T  S  Q  M  Q  N  R  L  V  D  D  A  Y  T  R  S  *  R  L  *  K  S  V  K  L  G  P  G  R  T  I  F  T  C  E  K  D  L  S  A  K  M  L  L  D  I  C  K  T  *  N  L  Q  N  V  F  C  M  *  V  L  K  L  K  L  L  R  D  P  L  P  G  *  I  Y  V  Q  S  E  L  M  F  S  R  S  C  A  S  I  I  V  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0079B07.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21912" stop="21937"/>
                    <exon start="22052" stop="22094"/>
                    <exon start="24532" stop="24646"/>
                    <exon start="25769" stop="25877"/>
                    <exon start="26050" stop="26128"/>
                    <exon start="26239" stop="26355"/>
                    <exon start="26435" stop="26572"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>624</number_coding_nucleotides>
                  <number_encoded_amino_acids>208</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TIEDTFLLKFSFQQQQEEVHIILGTMIKLFKVKEKQRELAENANGKPPIKKQSAGELRLHKDISELNLPETCSISFPNGKDDLMNFEVTIRPDEGYYVGGTFVFSFSISSIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHEAAAVLSDNPSLFESNVRRAMSGGYVGETFFQRCI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="28627" PGL_stop="31277"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28627" e_stop="28980"/>
            <exon e_start="30145" e_stop="31277"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28627" e_stop="28980" e_length="354"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="28981" i_stop="30144" i_length="1164"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="30145" e_stop="31277" e_length="1133"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28627" stop="28980"/>
              <exon start="30145" stop="30550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28643" stop="28980"/>
              <exon start="30145" stop="31277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28650" stop="28980"/>
              <exon start="30145" stop="30430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28786" stop="28980"/>
              <exon start="30145" stop="30702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28815" stop="28980"/>
              <exon start="30145" stop="30441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30529" stop="31006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715954" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGAGAGAGAAAGCGAGAAACAACAACAACAAAATCATGATGTGGGAAGCTGGAGAATCACCAGCATCTTCTTCGGCCGGTGCCGGAGCTGGTGGAAGTGGAGGTGCCGGAGTTGGTTTACCGGAAAGTGGTGGTGGTGGTGGTGGTGGGAGAAGGAAACCATCATGGAGAGAAAGAGAGAATAACAGGAGAAGAGAGAGGAGGAGGAGAGCTGTAGCTGCTAAGATTTATACTGGTTTAAGAGCTCAAGGAAACTATAATCTTCCGAAGCACTGTGATAACAATGAAGTTCTTAAAGCTCTTTGTACTGAAGCTGGTTGGATCGTTGAACCTGATGGTACCACTTATCGCAAG : GGATGCAAGCCAACCCCGATGGAGATTGGAGGCACTTCAACAAACATCACGCCAAGTTCTTCACGGCATCCAAGTCCCCCATCATCATACTTTGCTAGCCCAATTCCATCTTATCAGCCAAGTCCAACTTCCTCTTCTTTCCCCAGTCCATCTCGTGCTGATGCCAACATGTTATCACATCCATATTCTTTTCTCCAAAATGTCGTTCCTTCATCCCTTCCTCCATTACGAATATCAAACAGTGCCCCTGTAACTCCACCTCTTTCATCACCAACTAGGCATCCTAAGCAAACTTTCAATTTAGAAACTTTGGCCAAAGAATCAATGTTTGCTTTAAACATCCCTTTCTTTGCTGCTTCAGCCCCAGCAAGCCCAACTAGGGTTCAGCGTTTTACTCCTCCAACTATACCCGAGTGTGATGAATCTGACTCATCTACCATTGATTCAGGCCAGTGGATCAACTTTCAAAAGTATGCGTCAAATGTTCCACCTTCTCCAACATTTAATCTTGTAAAACCTGTGCCTCAGCCGCTTCGTCCTAATGATATGATCACAGACAAGGGTAAGAGCATAGACTTCGACTTTGAAAATGTATCAGTCAAGGCATGGGAAGGTGAAAGGATTCACGATGTAGGATTCGATGATCTGGAACTCACACTTGGAAGTGGCAATGCTCGCATATGATTGAGATTCTCTGATTTAGTTAGCTGATGAAGCACTTTGCATTCCAGTGGATTATTCCAGCCTCGTCTGGTGAGATATTGCCCAAACGTAGAGCTTGCATGAATCTCTGTTGCTACTTACCTTATGTATAACATTCCTTCCCCCCTTATTTGAAAAGCCCCCTTCAAAATTTATACAGGTCTTATCACAAGCATTTCGTGTAGATATATGCTTGCTTCTATGGTCGAGAATCAATTTCTTCATTGTAGACTAGATGAAGCTTCTTCACAACTATGAACTATCCATATTTGTCTATTAGAACTCGTTTTCTTTTCTTTCTGTTGGAACTAGCTACAGTTGAAGTCGATGATGTACCTTGTAGTCTCTCTGATGTTTTTCGTGCACATCATGAAGACATGAAACGCGTTACAGTTTATACATTGGAGATTTTGTGTTGTGTTTGGTTGAAG</gDNA_template>
            <first_frame> V  R  E  K  A  R  N  N  N  N  K  I  M  M  W  E  A  G  E  S  P  A  S  S  S  A  G  A  G  A  G  G  S  G  G  A  G  V  G  L  P  E  S  G  G  G  G  G  G  G  R  R  K  P  S  W  R  E  R  E  N  N  R  R  R  E  R  R  R  R  A  V  A  A  K  I  Y  T  G  L  R  A  Q  G  N  Y  N  L  P  K  H  C  D  N  N  E  V  L  K  A  L  C  T  E  A  G  W  I  V  E  P  D  G  T  T  Y  R  K  :  G  C  K  P  T  P  M  E  I  G  G  T  S  T  N  I  T  P  S  S  S  R  H  P  S  P  P  S  S  Y  F  A  S  P  I  P  S  Y  Q  P  S  P  T  S  S  S  F  P  S  P  S  R  A  D  A  N  M  L  S  H  P  Y  S  F  L  Q  N  V  V  P  S  S  L  P  P  L  R  I  S  N  S  A  P  V  T  P  P  L  S  S  P  T  R  H  P  K  Q  T  F  N  L  E  T  L  A  K  E  S  M  F  A  L  N  I  P  F  F  A  A  S  A  P  A  S  P  T  R  V  Q  R  F  T  P  P  T  I  P  E  C  D  E  S  D  S  S  T  I  D  S  G  Q  W  I  N  F  Q  K  Y  A  S  N  V  P  P  S  P  T  F  N  L  V  K  P  V  P  Q  P  L  R  P  N  D  M  I  T  D  K  G  K  S  I  D  F  D  F  E  N  V  S  V  K  A  W  E  G  E  R  I  H  D  V  G  F  D  D  L  E  L  T  L  G  S  G  N  A  R  I  *  L  R  F  S  D  L  V  S  *  *  S  T  L  H  S  S  G  L  F  Q  P  R  L  V  R  Y  C  P  N  V  E  L  A  *  I  S  V  A  T  Y  L  M  Y  N  I  P  S  P  L  I  *  K  A  P  F  K  I  Y  T  G  L  I  T  S  I  S  C  R  Y  M  L  A  S  M  V  E  N  Q  F  L  H  C  R  L  D  E  A  S  S  Q  L  *  T  I  H  I  C  L  L  E  L  V  F  F  S  F  C  W  N  *  L  Q  L  K  S  M  M  Y  L  V  V  S  L  M  F  F  V  H  I  M  K  T  *  N  A  L  Q  F  I  H  W  R  F  C  V  V  F  G  *   </first_frame>
            <second_frame>  *  E  R  K  R  E  T  T  T  T  K  S  *  C  G  K  L  E  N  H  Q  H  L  L  R  P  V  P  E  L  V  E  V  E  V  P  E  L  V  Y  R  K  V  V  V  V  V  V  V  G  E  G  N  H  H  G  E  K  E  R  I  T  G  E  E  R  G  G  G  E  L  *  L  L  R  F  I  L  V  *  E  L  K  E  T  I  I  F  R  S  T  V  I  T  M  K  F  L  K  L  F  V  L  K  L  V  G  S  L  N  L  M  V  P  L  I  A  R :   D  A  S  Q  P  R  W  R  L  E  A  L  Q  Q  T  S  R  Q  V  L  H  G  I  Q  V  P  H  H  H  T  L  L  A  Q  F  H  L  I  S  Q  V  Q  L  P  L  L  S  P  V  H  L  V  L  M  P  T  C  Y  H  I  H  I  L  F  S  K  M  S  F  L  H  P  F  L  H  Y  E  Y  Q  T  V  P  L  *  L  H  L  F  H  H  Q  L  G  I  L  S  K  L  S  I  *  K  L  W  P  K  N  Q  C  L  L  *  T  S  L  S  L  L  L  Q  P  Q  Q  A  Q  L  G  F  S  V  L  L  L  Q  L  Y  P  S  V  M  N  L  T  H  L  P  L  I  Q  A  S  G  S  T  F  K  S  M  R  Q  M  F  H  L  L  Q  H  L  I  L  *  N  L  C  L  S  R  F  V  L  M  I  *  S  Q  T  R  V  R  A  *  T  S  T  L  K  M  Y  Q  S  R  H  G  K  V  K  G  F  T  M  *  D  S  M  I  W  N  S  H  L  E  V  A  M  L  A  Y  D  *  D  S  L  I  *  L  A  D  E  A  L  C  I  P  V  D  Y  S  S  L  V  W  *  D  I  A  Q  T  *  S  L  H  E  S  L  L  L  L  T  L  C  I  T  F  L  P  P  L  F  E  K  P  P  S  K  F  I  Q  V  L  S  Q  A  F  R  V  D  I  C  L  L  L  W  S  R  I  N  F  F  I  V  D  *  M  K  L  L  H  N  Y  E  L  S  I  F  V  Y  *  N  S  F  S  F  L  S  V  G  T  S  Y  S  *  S  R  *  C  T  L  *  S  L  *  C  F  S  C  T  S  *  R  H  E  T  R  Y  S  L  Y  I  G  D  F  V  L  C  L  V  E  </second_frame>
            <third_frame>   E  R  E  S  E  K  Q  Q  Q  Q  N  H  D  V  G  S  W  R  I  T  S  I  F  F  G  R  C  R  S  W  W  K  W  R  C  R  S  W  F  T  G  K  W  W  W  W  W  W  W  E  K  E  T  I  M  E  R  K  R  E  *  Q  E  K  R  E  E  E  E  S  C  S  C  *  D  L  Y  W  F  K  S  S  R  K  L  *  S  S  E  A  L  *  *  Q  *  S  S  *  S  S  L  Y  *  S  W  L  D  R  *  T  *  W  Y  H  L  S  Q   : G  M  Q  A  N  P  D  G  D  W  R  H  F  N  K  H  H  A  K  F  F  T  A  S  K  S  P  I  I  I  L  C  *  P  N  S  I  L  S  A  K  S  N  F  L  F  F  P  Q  S  I  S  C  *  C  Q  H  V  I  T  S  I  F  F  S  P  K  C  R  S  F  I  P  S  S  I  T  N  I  K  Q  C  P  C  N  S  T  S  F  I  T  N  *  A  S  *  A  N  F  Q  F  R  N  F  G  Q  R  I  N  V  C  F  K  H  P  F  L  C  C  F  S  P  S  K  P  N  *  G  S  A  F  Y  S  S  N  Y  T  R  V  *  *  I  *  L  I  Y  H  *  F  R  P  V  D  Q  L  S  K  V  C  V  K  C  S  T  F  S  N  I  *  S  C  K  T  C  A  S  A  A  S  S  *  *  Y  D  H  R  Q  G  *  E  H  R  L  R  L  *  K  C  I  S  Q  G  M  G  R  *  K  D  S  R  C  R  I  R  *  S  G  T  H  T  W  K  W  Q  C  S  H  M  I  E  I  L  *  F  S  *  L  M  K  H  F  A  F  Q  W  I  I  P  A  S  S  G  E  I  L  P  K  R  R  A  C  M  N  L  C  C  Y  L  P  Y  V  *  H  S  F  P  P  Y  L  K  S  P  L  Q  N  L  Y  R  S  Y  H  K  H  F  V  *  I  Y  A  C  F  Y  G  R  E  S  I  S  S  L  *  T  R  *  S  F  F  T  T  M  N  Y  P  Y  L  S  I  R  T  R  F  L  F  F  L  L  E  L  A  T  V  E  V  D  D  V  P  C  S  L  S  D  V  F  R  A  H  H  E  D  M  K  R  V  T  V  Y  T  L  E  I  L  C  C  V  W  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0079B07.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28627" stop="28980"/>
                    <exon start="30145" stop="30828"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1035</number_coding_nucleotides>
                  <number_encoded_amino_acids>345</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VREKARNNNNKIMMWEAGESPASSSAGAGAGGSGGAGVGLPESGGGGGGGRRKPSWRERENNRRRERRRRAVAAKIYTGLRAQGNYNLPKHCDNNEVLKALCTEAGWIVEPDGTTYRKGCKPTPMEIGGTSTNITPSSSRHPSPPSSYFASPIPSYQPSPTSSSFPSPSRADANMLSHPYSFLQNVVPSSLPPLRISNSAPVTPPLSSPTRHPKQTFNLETLAKESMFALNIPFFAASAPASPTRVQRFTPPTIPECDESDSSTIDSGQWINFQKYASNVPPSPTFNLVKPVPQPLRPNDMITDKGKSIDFDFENVSVKAWEGERIHDVGFDDLELTLGSGNARI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0079B07.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31086" stop="31277"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFTTMNYPYLSIRTRFLFFLLELATVEVDDVPCSLSDVFRAHHEDMKRVTVYTLEILCCVWLK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="28650" e_stop="28980"/>
            <exon e_start="30145" e_stop="30548"/>
            <exon e_start="30645" e_stop="30759"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.973"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28650" e_stop="28980" e_length="331"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="28981" i_stop="30144" i_length="1164"/>
          </intron>
          <exon e_serial="2" e_score="0.973">
            <gDNA_exon_boundary e_start="30145" e_stop="30548" e_length="404"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="30549" i_stop="30644" i_length="96"/>
          </intron>
          <exon e_serial="3" e_score="0.974">
            <gDNA_exon_boundary e_start="30645" e_stop="30759" e_length="115"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28650" stop="28980"/>
              <exon start="30145" stop="30430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28797" stop="28980"/>
              <exon start="30145" stop="30548"/>
              <exon start="30645" stop="30759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28815" stop="28980"/>
              <exon start="30145" stop="30441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467426" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAACAACAAAATCATGATGTGGGAAGCTGGAGAATCACCAGCATCTTCTTCGGCCGGTGCCGGAGCTGGTGGAAGTGGAGGTGCCGGAGTTGGTTTACCGGAAAGTGGTGGTGGTGGTGGTGGTGGGAGAAGGAAACCATCATGGAGAGAAAGAGAGAATAACAGGAGAAGAGAGAGGAGGAGGAGAGCTGTAGCTGCTAAGATTTATACTGGTTTAAGAGCTCAAGGAAACTATAATCTTCCGAAGCACTGTGATAACAATGAAGTTCTTAAAGCTCTTTGTACTGAAGCTGGTTGGATCGTTGAACCTGATGGTACCACTTATCGCAAG : GGATGCAAGCCAACCCCGATGGAGATTGGAGGCACTTCAACAAACATCACGCCAAGTTCTTCACGGCATCCAAGTCCCCCATCATCATACTTTGCTAGCCCAATTCCATCTTATCAGCCAAGTCCAACTTCCTCTTCTTTCCCCAGTCCATCTCGTGCTGATGCCAACATGTTATCACATCCATATTCTTTTCTCCAAAATGTCGTTCCTTCATCCCTTCCTCCATTACGAATATCAAACAGTGCCCCTGTAACTCCACCTCTTTCATCACCAACTAGGCATCCTAAGCAAACTTTCAATTTAGAAACTTTGGCCAAAGAATCAATGTTTGCTTTAAACATCCCTTTCTTTGCTGCTTCAGCCCCAGCAAGCCCAACTAGGGTTCAGCGTTTTACTCCTCCAAC : ATTTAATCTTGTAAAACCTGTGCCTCAGCCGCTTCGTCCTAATGATATGATCACAGACAAGGGTAAGAGCATAGACTTCGACTTTGAAAATGTATCAGTCAAGGCATGGGAAGGT</gDNA_template>
            <first_frame> Q  Q  Q  N  H  D  V  G  S  W  R  I  T  S  I  F  F  G  R  C  R  S  W  W  K  W  R  C  R  S  W  F  T  G  K  W  W  W  W  W  W  W  E  K  E  T  I  M  E  R  K  R  E  *  Q  E  K  R  E  E  E  E  S  C  S  C  *  D  L  Y  W  F  K  S  S  R  K  L  *  S  S  E  A  L  *  *  Q  *  S  S  *  S  S  L  Y  *  S  W  L  D  R  *  T  *  W  Y  H  L  S  Q   : G  M  Q  A  N  P  D  G  D  W  R  H  F  N  K  H  H  A  K  F  F  T  A  S  K  S  P  I  I  I  L  C  *  P  N  S  I  L  S  A  K  S  N  F  L  F  F  P  Q  S  I  S  C  *  C  Q  H  V  I  T  S  I  F  F  S  P  K  C  R  S  F  I  P  S  S  I  T  N  I  K  Q  C  P  C  N  S  T  S  F  I  T  N  *  A  S  *  A  N  F  Q  F  R  N  F  G  Q  R  I  N  V  C  F  K  H  P  F  L  C  C  F  S  P  S  K  P  N  *  G  S  A  F  Y  S  S  N  :  I  *  S  C  K  T  C  A  S  A  A  S  S  *  *  Y  D  H  R  Q  G  *  E  H  R  L  R  L  *  K  C  I  S  Q  G  M  G  R  </first_frame>
            <second_frame>  N  N  K  I  M  M  W  E  A  G  E  S  P  A  S  S  S  A  G  A  G  A  G  G  S  G  G  A  G  V  G  L  P  E  S  G  G  G  G  G  G  G  R  R  K  P  S  W  R  E  R  E  N  N  R  R  R  E  R  R  R  R  A  V  A  A  K  I  Y  T  G  L  R  A  Q  G  N  Y  N  L  P  K  H  C  D  N  N  E  V  L  K  A  L  C  T  E  A  G  W  I  V  E  P  D  G  T  T  Y  R  K  :  G  C  K  P  T  P  M  E  I  G  G  T  S  T  N  I  T  P  S  S  S  R  H  P  S  P  P  S  S  Y  F  A  S  P  I  P  S  Y  Q  P  S  P  T  S  S  S  F  P  S  P  S  R  A  D  A  N  M  L  S  H  P  Y  S  F  L  Q  N  V  V  P  S  S  L  P  P  L  R  I  S  N  S  A  P  V  T  P  P  L  S  S  P  T  R  H  P  K  Q  T  F  N  L  E  T  L  A  K  E  S  M  F  A  L  N  I  P  F  F  A  A  S  A  P  A  S  P  T  R  V  Q  R  F  T  P  P  T :   F  N  L  V  K  P  V  P  Q  P  L  R  P  N  D  M  I  T  D  K  G  K  S  I  D  F  D  F  E  N  V  S  V  K  A  W  E  G </second_frame>
            <third_frame>   T  T  K  S  *  C  G  K  L  E  N  H  Q  H  L  L  R  P  V  P  E  L  V  E  V  E  V  P  E  L  V  Y  R  K  V  V  V  V  V  V  V  G  E  G  N  H  H  G  E  K  E  R  I  T  G  E  E  R  G  G  G  E  L  *  L  L  R  F  I  L  V  *  E  L  K  E  T  I  I  F  R  S  T  V  I  T  M  K  F  L  K  L  F  V  L  K  L  V  G  S  L  N  L  M  V  P  L  I  A  R :   D  A  S  Q  P  R  W  R  L  E  A  L  Q  Q  T  S  R  Q  V  L  H  G  I  Q  V  P  H  H  H  T  L  L  A  Q  F  H  L  I  S  Q  V  Q  L  P  L  L  S  P  V  H  L  V  L  M  P  T  C  Y  H  I  H  I  L  F  S  K  M  S  F  L  H  P  F  L  H  Y  E  Y  Q  T  V  P  L  *  L  H  L  F  H  H  Q  L  G  I  L  S  K  L  S  I  *  K  L  W  P  K  N  Q  C  L  L  *  T  S  L  S  L  L  L  Q  P  Q  Q  A  Q  L  G  F  S  V  L  L  L  Q   : H  L  I  L  *  N  L  C  L  S  R  F  V  L  M  I  *  S  Q  T  R  V  R  A  *  T  S  T  L  K  M  Y  Q  S  R  H  G  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0079B07.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28651" stop="28980"/>
                    <exon start="30145" stop="30548"/>
                    <exon start="30645" stop="30759"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>849</number_coding_nucleotides>
                  <number_encoded_amino_acids>283</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NNKIMMWEAGESPASSSAGAGAGGSGGAGVGLPESGGGGGGGRRKPSWRERENNRRRERRRRAVAAKIYTGLRAQGNYNLPKHCDNNEVLKALCTEAGWIVEPDGTTYRKGCKPTPMEIGGTSTNITPSSSRHPSPPSSYFASPIPSYQPSPTSSSFPSPSRADANMLSHPYSFLQNVVPSSLPPLRISNSAPVTPPLSSPTRHPKQTFNLETLAKESMFALNIPFFAASAPASPTRVQRFTPPTFNLVKPVPQPLRPNDMITDKGKSIDFDFENVSVKAWEG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="39514" PGL_stop="34974"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39514" e_stop="39429"/>
            <exon e_start="36809" e_stop="36544"/>
            <exon e_start="35780" e_stop="35493"/>
            <exon e_start="35042" e_stop="34974"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.785" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.733" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.973" e_score="1.000"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39514" e_stop="39429" e_length="86"/>
          </exon>
          <intron i_serial="1" don_prob="0.785" acc_prob="0.973">
            <gDNA_intron_boundary i_start="39428" i_stop="36810" i_length="2619"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36809" e_stop="36544" e_length="266"/>
          </exon>
          <intron i_serial="2" don_prob="0.961" acc_prob="0.733">
            <gDNA_intron_boundary i_start="36543" i_stop="35781" i_length="763"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35780" e_stop="35493" e_length="288"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.973">
            <gDNA_intron_boundary i_start="35492" i_stop="35043" i_length="450"/>
          </intron>
          <exon e_serial="4" e_score="0.971">
            <gDNA_exon_boundary e_start="35042" e_stop="34974" e_length="69"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39514" stop="39429"/>
              <exon start="36809" stop="36544"/>
              <exon start="35780" stop="35493"/>
              <exon start="35042" stop="34974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39505" stop="39429"/>
              <exon start="36809" stop="36544"/>
              <exon start="35780" stop="35493"/>
              <exon start="35042" stop="35023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570839" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCACAGAAGAATTGTTTGTGTATACATGCTCAAAGAAAGCTAAAAAGCTGCTGTCTTTGCAATCCTTTTTTACTAATGTCTATAT : AGATCAAGAGGCCGGTGGGCCTTGAGTGAACCTTAATTTCAGTAGTGAAAGGAAAATGACCACAAAACCAAAGAAAGGATGGAAATCAATTTCGTCTCTCAATTTGAAGACCAAATCAGCAGCACATTTTTGTTTGCTCCCCAAATCAAAGTCGGATCGATATGGTCCTGGCGACACACCTGTTTATCTCAACGTGTATGACTTGACTCCTATGAACGGCTATGTATATTGGGTTGGCCTTGGTATTTTTCATTCTGGTGTGGAAG : TTCATGGTGTAGAATATGCATTTGGAGCTCATGACTATTCAAGCAGTGGTGTCTTTGAAGTTGAACCACGACAATGCCCGGGGTTCAAGTTTAGGAAGTCCATATTCATTGGGGTTACAAAGTTGGATCCCTGTCAGGTTAGAGAGTTTATCGAACGTCAAGCTGCTAGCTATAATGGTGACACATATCATTTGATTTCGAAGAACTGCAACCATTTTTGCAACGATACATGCTACAAGCTCACCGGGAAAAAGATTCCAAAGTGGGTAAACCGACTTGCAAAATTAG : GTTCATCATTCAACTGCATGCTACCCGAGGCTCTAAAAGTTGCCGCGGTGGAACATGACCCTAATGGAC</gDNA_template>
            <first_frame> F  T  E  E  L  F  V  Y  T  C  S  K  K  A  K  K  L  L  S  L  Q  S  F  F  T  N  V  Y  I :   D  Q  E  A  G  G  P  *  V  N  L  N  F  S  S  E  R  K  M  T  T  K  P  K  K  G  W  K  S  I  S  S  L  N  L  K  T  K  S  A  A  H  F  C  L  L  P  K  S  K  S  D  R  Y  G  P  G  D  T  P  V  Y  L  N  V  Y  D  L  T  P  M  N  G  Y  V  Y  W  V  G  L  G  I  F  H  S  G  V  E   : V  H  G  V  E  Y  A  F  G  A  H  D  Y  S  S  S  G  V  F  E  V  E  P  R  Q  C  P  G  F  K  F  R  K  S  I  F  I  G  V  T  K  L  D  P  C  Q  V  R  E  F  I  E  R  Q  A  A  S  Y  N  G  D  T  Y  H  L  I  S  K  N  C  N  H  F  C  N  D  T  C  Y  K  L  T  G  K  K  I  P  K  W  V  N  R  L  A  K  L   : G  S  S  F  N  C  M  L  P  E  A  L  K  V  A  A  V  E  H  D  P  N  G  </first_frame>
            <second_frame>  S  Q  K  N  C  L  C  I  H  A  Q  R  K  L  K  S  C  C  L  C  N  P  F  L  L  M  S  I   : *  I  K  R  P  V  G  L  E  *  T  L  I  S  V  V  K  G  K  *  P  Q  N  Q  R  K  D  G  N  Q  F  R  L  S  I  *  R  P  N  Q  Q  H  I  F  V  C  S  P  N  Q  S  R  I  D  M  V  L  A  T  H  L  F  I  S  T  C  M  T  *  L  L  *  T  A  M  Y  I  G  L  A  L  V  F  F  I  L  V  W  K  :  F  M  V  *  N  M  H  L  E  L  M  T  I  Q  A  V  V  S  L  K  L  N  H  D  N  A  R  G  S  S  L  G  S  P  Y  S  L  G  L  Q  S  W  I  P  V  R  L  E  S  L  S  N  V  K  L  L  A  I  M  V  T  H  I  I  *  F  R  R  T  A  T  I  F  A  T  I  H  A  T  S  S  P  G  K  R  F  Q  S  G  *  T  D  L  Q  N  *  :  V  H  H  S  T  A  C  Y  P  R  L  *  K  L  P  R  W  N  M  T  L  M  D </second_frame>
            <third_frame>   H  R  R  I  V  C  V  Y  M  L  K  E  S  *  K  A  A  V  F  A  I  L  F  Y  *  C  L  Y  :  R  S  R  G  R  W  A  L  S  E  P  *  F  Q  *  *  K  E  N  D  H  K  T  K  E  R  M  E  I  N  F  V  S  Q  F  E  D  Q  I  S  S  T  F  L  F  A  P  Q  I  K  V  G  S  I  W  S  W  R  H  T  C  L  S  Q  R  V  *  L  D  S  Y  E  R  L  C  I  L  G  W  P  W  Y  F  S  F  W  C  G  S :   S  W  C  R  I  C  I  W  S  S  *  L  F  K  Q  W  C  L  *  S  *  T  T  T  M  P  G  V  Q  V  *  E  V  H  I  H  W  G  Y  K  V  G  S  L  S  G  *  R  V  Y  R  T  S  S  C  *  L  *  W  *  H  I  S  F  D  F  E  E  L  Q  P  F  L  Q  R  Y  M  L  Q  A  H  R  E  K  D  S  K  V  G  K  P  T  C  K  I  R :   F  I  I  Q  L  H  A  T  R  G  S  K  S  C  R  G  G  T  *  P  *  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0079B07.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36784" stop="36544"/>
                    <exon start="35780" stop="35493"/>
                    <exon start="35042" stop="34975"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VNLNFSSERKMTTKPKKGWKSISSLNLKTKSAAHFCLLPKSKSDRYGPGDTPVYLNVYDLTPMNGYVYWVGLGIFHSGVEVHGVEYAFGAHDYSSSGVFEVEPRQCPGFKFRKSIFIGVTKLDPCQVREFIERQAASYNGDTYHLISKNCNHFCNDTCYKLTGKKIPKWVNRLAKLGSSFNCMLPEALKVAAVEHDPNG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="49497" PGL_stop="47706"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49497" e_stop="48834"/>
            <exon e_start="47750" e_stop="47706"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.969" acc_prob="0.971" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49497" e_stop="48834" e_length="664"/>
          </exon>
          <intron i_serial="1" don_prob="0.969" acc_prob="0.971">
            <gDNA_intron_boundary i_start="48833" i_stop="47751" i_length="1083"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47750" e_stop="47706" e_length="45"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49497" stop="48834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49496" stop="48834"/>
              <exon start="47750" stop="47706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328374" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTTTTGGGTGTGTTCGATATGAAAGTAACATATTTTTCATAAAACAACTTTTTCATATTGGTACTTAAACGAAAAATATATAACAATTTTAGATAAACATTATGATAGTGGATATGACGTAGTTGGGATGAGGGTGAGGAGATAGAACGCAATGAATGTGAAACAAACTATTTAAATAATCTTTACTGGATTTGATCGTATCCGTACCTTAACTTCTAGCTCTGGCTCTCCCTCCCTATAACACAATCTTTTAGTTAAATATCTCTATAACAATCATAGTTAAGATAGAATTTTATTGTTGGGCTTTTTTGCAACATTTTCTTTTAGATTCATTACTCAGAAATTCAAGTGGAATAAACAACTTATATTTGCTACTCCATAAAAAAAAGTCTTTTTACTACTTGACTTTTAACCTTTTCTTTTTTCTCTCTATGTTGAAAAATGAGACTTAAAATCATCTCAAGAATCAAATAAATACCACAAAATTTCAACTTTTTATGTGTGTAATTTTGCAGCTAAAATTTTACAGAACTCCAAATGGGGACTCCAAGTTCAAGAAGTGGTGCAGCAATTGTAATAGGTGTTGTTGTTGGTTGTGTTTTTGCCCTCTTTTTATCCATCCACCACCTAAATCTCATCCTTTGTTTTAATATGATGTTTTG : GTCGAGTCATGGTCGAATGAATCCATGGAGTGGATGAACATGTTG</gDNA_template>
            <first_frame> V  F  W  V  C  S  I  *  K  *  H  I  F  H  K  T  T  F  S  Y  W  Y  L  N  E  K  Y  I  T  I  L  D  K  H  Y  D  S  G  Y  D  V  V  G  M  R  V  R  R  *  N  A  M  N  V  K  Q  T  I  *  I  I  F  T  G  F  D  R  I  R  T  L  T  S  S  S  G  S  P  S  L  *  H  N  L  L  V  K  Y  L  Y  N  N  H  S  *  D  R  I  L  L  L  G  F  F  A  T  F  S  F  R  F  I  T  Q  K  F  K  W  N  K  Q  L  I  F  A  T  P  *  K  K  V  F  L  L  L  D  F  *  P  F  L  F  S  L  Y  V  E  K  *  D  L  K  S  S  Q  E  S  N  K  Y  H  K  I  S  T  F  Y  V  C  N  F  A  A  K  I  L  Q  N  S  K  W  G  L  Q  V  Q  E  V  V  Q  Q  L  *  *  V  L  L  L  V  V  F  L  P  S  F  Y  P  S  T  T  *  I  S  S  F  V  L  I  *  C  F   : G  R  V  M  V  E  *  I  H  G  V  D  E  H  V  </first_frame>
            <second_frame>  F  F  G  C  V  R  Y  E  S  N  I  F  F  I  K  Q  L  F  H  I  G  T  *  T  K  N  I  *  Q  F  *  I  N  I  M  I  V  D  M  T  *  L  G  *  G  *  G  D  R  T  Q  *  M  *  N  K  L  F  K  *  S  L  L  D  L  I  V  S  V  P  *  L  L  A  L  A  L  P  P  Y  N  T  I  F  *  L  N  I  S  I  T  I  I  V  K  I  E  F  Y  C  W  A  F  L  Q  H  F  L  L  D  S  L  L  R  N  S  S  G  I  N  N  L  Y  L  L  L  H  K  K  K  S  F  Y  Y  L  T  F  N  L  F  F  F  L  S  M  L  K  N  E  T  *  N  H  L  K  N  Q  I  N  T  T  K  F  Q  L  F  M  C  V  I  L  Q  L  K  F  Y  R  T  P  N  G  D  S  K  F  K  K  W  C  S  N  C  N  R  C  C  C  W  L  C  F  C  P  L  F  I  H  P  P  P  K  S  H  P  L  F  *  Y  D  V  L  :  V  E  S  W  S  N  E  S  M  E  W  M  N  M  L </second_frame>
            <third_frame>   F  L  G  V  F  D  M  K  V  T  Y  F  S  *  N  N  F  F  I  L  V  L  K  R  K  I  Y  N  N  F  R  *  T  L  *  *  W  I  *  R  S  W  D  E  G  E  E  I  E  R  N  E  C  E  T  N  Y  L  N  N  L  Y  W  I  *  S  Y  P  Y  L  N  F  *  L  W  L  S  L  P  I  T  Q  S  F  S  *  I  S  L  *  Q  S  *  L  R  *  N  F  I  V  G  L  F  C  N  I  F  F  *  I  H  Y  S  E  I  Q  V  E  *  T  T  Y  I  C  Y  S  I  K  K  S  L  F  T  T  *  L  L  T  F  S  F  F  S  L  C  *  K  M  R  L  K  I  I  S  R  I  K  *  I  P  Q  N  F  N  F  L  C  V  *  F  C  S  *  N  F  T  E  L  Q  M  G  T  P  S  S  R  S  G  A  A  I  V  I  G  V  V  V  G  C  V  F  A  L  F  L  S  I  H  H  L  N  L  I  L  C  F  N  M  M  F  W :   S  S  H  G  R  M  N  P  W  S  G  *  T  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0079B07.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49241" stop="49044"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNISITIIVKIEFYCWAFLQHFLLDSLLRNSSGINNLYLLLHKKKSFYYLTFNLFFFLSMLKNET*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0079B07.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49043" stop="48846"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NHLKNQINTTKFQLFMCVILQLKFYRTPNGDSKFKKWCSNCNRCCCWLCFCPLFIHPPPKSHPLF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="55688" PGL_stop="49907"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55688" e_stop="55430"/>
            <exon e_start="54494" e_stop="53561"/>
            <exon e_start="52521" e_stop="52197"/>
            <exon e_start="52109" e_stop="51960"/>
            <exon e_start="51297" e_stop="51007"/>
            <exon e_start="50445" e_stop="49907"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.849" acc_prob="0.842" e_score="0.977"/>
          <exon-intron don_prob="0.994" acc_prob="0.910" e_score="0.975"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.586" acc_prob="0.747" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="55688" e_stop="55430" e_length="259"/>
          </exon>
          <intron i_serial="1" don_prob="0.849" acc_prob="0.842">
            <gDNA_intron_boundary i_start="55429" i_stop="54495" i_length="935"/>
          </intron>
          <exon e_serial="2" e_score="0.975">
            <gDNA_exon_boundary e_start="54494" e_stop="53561" e_length="934"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.910">
            <gDNA_intron_boundary i_start="53560" i_stop="52522" i_length="1039"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52521" e_stop="52197" e_length="325"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="52196" i_stop="52110" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52109" e_stop="51960" e_length="150"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.991">
            <gDNA_intron_boundary i_start="51959" i_stop="51298" i_length="662"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="51297" e_stop="51007" e_length="291"/>
          </exon>
          <intron i_serial="5" don_prob="0.586" acc_prob="0.747">
            <gDNA_intron_boundary i_start="51006" i_stop="50446" i_length="561"/>
          </intron>
          <exon e_serial="6" e_score="0.992">
            <gDNA_exon_boundary e_start="50445" e_stop="49907" e_length="539"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55688" stop="55430"/>
              <exon start="54494" stop="54244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55632" stop="55430"/>
              <exon start="54494" stop="54055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55632" stop="55430"/>
              <exon start="54494" stop="54246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54378" stop="54071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338171" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54249" stop="53561"/>
              <exon start="52521" stop="52460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54249" stop="53663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54118" stop="53561"/>
              <exon start="52521" stop="52411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53977" stop="53753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53624" stop="53561"/>
              <exon start="52521" stop="52197"/>
              <exon start="52109" stop="51960"/>
              <exon start="51297" stop="51192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52330" stop="52197"/>
              <exon start="52109" stop="51960"/>
              <exon start="51297" stop="51064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52314" stop="52197"/>
              <exon start="52109" stop="51960"/>
              <exon start="51297" stop="51087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52277" stop="52197"/>
              <exon start="52109" stop="51960"/>
              <exon start="51297" stop="51007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52275" stop="52197"/>
              <exon start="52109" stop="51960"/>
              <exon start="51297" stop="51007"/>
              <exon start="50445" stop="50315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52275" stop="52197"/>
              <exon start="52109" stop="51960"/>
              <exon start="51297" stop="51007"/>
              <exon start="50445" stop="50320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52231" stop="52197"/>
              <exon start="52109" stop="51960"/>
              <exon start="51297" stop="51007"/>
              <exon start="50445" stop="50215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52231" stop="52197"/>
              <exon start="52109" stop="51960"/>
              <exon start="51297" stop="51007"/>
              <exon start="50445" stop="50229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50383" stop="49907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357800" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGATTATTAGGGTTTGTTGGTTGGGGAAGATTAACTGTGAGCCCTTTAAGCTCAGCTCAAGAGAGAGAAAGAGAGAGGAGAGAGAAGCCTCTAACCTAACAAACTCTCAAGATTCATATGAAGGCAAATCAAGTTACATTTGGGGGCATTTAAAGAAACAAATTGTTTTGAGCTCTTAAGTTTTTTTATTTGTTTGTTTGTGATTTTATATGGATTTTGTCATCTGGGTGTTTGCTTCCTGCAATTATTATTCATAAAG : TAGGTGTCTGGATTCTCAAAGTTATATTGGAGAAGGAGGGTAGTGCATGAGTTGATGCTTGATATTAAATGTACTGAGCGTTATGATAGTTTTTGTGTATAGTAGTGGTTGTTGTGTTTTTTCCTATAAAGAGGTGCAAGCCAATCAGCTGTGGTTAATAAGCCGATATGCCGAGTAACTATCTTTTTAGATTAAGCCGGGCTGCTAGACAGGGACTCCAGAAATCCATATCTGGGAAAGAAAGTGGGCTCCAGGATTCGGTTGAGATTTTGGTTGCCCAAGGGAGATTGTTGTTTGGCAATTCAAAGTGCTTCTATTCAGTACCATTTGCAAGAGCAACTGACCTGAATGTGCTTGTCCGGCCTGGAACCTTAGCTGCCGCACAGGCGAATTTGCACGTAGCAAACCAGAAAAAGAATATTTCTGTAGTTGGAGCTATTTCTCGTGCAGTTTCAATTCCTTCTGTGTCAGGACCAGCATTTCACATCTGTGGCTATCACATTGATCGCGTGATATTGGACCCGGCTGAAAGTTTGTCTGACAGCGACTCTCACAAAGCACCTATGGAAATCTGTGGTTCTCGAACTTGTCCTCCTGGCTGTTCCTCAAGCAAAATGACTTCAAGACATCTCAATGGTGTTCTTTCTGTAAATAATCCTATTACCTCTTATAGCAATAAAAGCTTTGATAATTGTAGAAAAGCCAGCATGAGTTTGAGAAACAAAAATCAGCCCAACAACTTTTTACTTTACGGATATTTCGCATACAATGTGGCAAAGAGACGGGGAAATTCTAATCTATATGAAGGCTTTGGTTTGATGGGGTTCCATACTTCATCAACTGCTTCTTCTTCTACTGGCACTGCTCATGATGTGTCATTTGGTAGCTCTACGTGTGGGGTGCAGCTCTCAAGTTCAGCAGATTCATCTGAACA : GAATATCCGCATTGACAGAACCCTGAAACTAAATTCCGGATCATGTTACCTGCCTCATCCTGATAAAGAAGATACTGGTGGAGAGGATGCTCATTTTATTTGCAGTGATGAACAAGCAATTGGTGTAGCTGATGGTGTTGGTGGTTGGGCTGATCTTGGTATTGATGCTGGGAAGTATGCACGAGAGCTAATGTCGAACTCAGTGGCCGCAATTCAAGATGAGCCAAAAGGTTCAGTGGACCCAGCCAGAGTCCTCGATAAAGCTTATACATGCACAAAAGCCAAAGGTTCCTCAACTGCCTGTATAATTGCCCTCACAGATCAG : GGTCTGCATGCTATTAATTTAGGAGATAGCGGATTCATTGTGGTCAGAGATGGATCTACTGTTTTCAGATCCCCTGTGCAGCAGCATGATTTCAATTTCACGTATCAACTAGAGAGTGGTAATGCTGGTGACTTACCAAGTTCTGGAGAG : GTCTTCAAAATACCAGTGGCACAAGGAGATGTTATAATAGCTGGTACTGATGGGTTGTTTGACAATTTGTACAACAATGATATTAATGCAATCGTCGTTCATGCAACGAGAGCTGGCTTAGGGCCACAGGTGACAGCTCAGAAGATAGCTGCATTAGCTCGGCAAAGAGCACAGGATAAAAACAGGCAGACCCCTTTCTCTTCTGCAGCTCAAGAAGCTGGGTTCCGTTACTATGGAGGGAAGCTGGACGATATAACTGTGGTTGTATCCTACATAAGCAGTGACAGAAAC : GAAAGATCTAACAGCTTAAAGATGTAGTTAAGAGCTTTCGTTTCTTGCTTTGGATCGCCTGCTTCGGTCTACAGCCTACAGCCTACAGGTTTTAAGCTCCATTTGATGGGGATGTCAAATCTTTGCTTATATCGTGTGAACTGTCTCGAAGATCACTTTTACTTCTGATGTACTAGCTTCTTGGCAATTTACCTCCTCTTTCCCACTCAATGCATTACACACACAAGCGAAGAAGGTAGATGGCAAACCACTTCCTCCCTCTCTCCCTCCCTCCCGTTAGCGGAAAGATCATATGAGTGCTGATCATGTATATGGAATAGATGTAGACAGAAAAGTGCTTGATTTAGGTTTTTTCTTTCTGGAGATTGTTGGTTTCCCATAGAATTGCTAGTTAGGACATACAGTTACTTGCAGCATTAAGCTTTCTTCAATTCTTGGAAACCAAATTCTGTTATCTTTTTCCAGTGTAATAGTATTCTTGGACATGATTTTCCCACTGGCTGTAAATAAATGAGTATTTCTCCTTTGTTCCCTATGTT</gDNA_template>
            <first_frame> *  L  L  G  F  V  G  W  G  R  L  T  V  S  P  L  S  S  A  Q  E  R  E  R  E  R  R  E  K  P  L  T  *  Q  T  L  K  I  H  M  K  A  N  Q  V  T  F  G  G  I  *  R  N  K  L  F  *  A  L  K  F  F  Y  L  F  V  C  D  F  I  W  I  L  S  S  G  C  L  L  P  A  I  I  I  H  K   : V  G  V  W  I  L  K  V  I  L  E  K  E  G  S  A  *  V  D  A  *  Y  *  M  Y  *  A  L  *  *  F  L  C  I  V  V  V  V  V  F  F  P  I  K  R  C  K  P  I  S  C  G  *  *  A  D  M  P  S  N  Y  L  F  R  L  S  R  A  A  R  Q  G  L  Q  K  S  I  S  G  K  E  S  G  L  Q  D  S  V  E  I  L  V  A  Q  G  R  L  L  F  G  N  S  K  C  F  Y  S  V  P  F  A  R  A  T  D  L  N  V  L  V  R  P  G  T  L  A  A  A  Q  A  N  L  H  V  A  N  Q  K  K  N  I  S  V  V  G  A  I  S  R  A  V  S  I  P  S  V  S  G  P  A  F  H  I  C  G  Y  H  I  D  R  V  I  L  D  P  A  E  S  L  S  D  S  D  S  H  K  A  P  M  E  I  C  G  S  R  T  C  P  P  G  C  S  S  S  K  M  T  S  R  H  L  N  G  V  L  S  V  N  N  P  I  T  S  Y  S  N  K  S  F  D  N  C  R  K  A  S  M  S  L  R  N  K  N  Q  P  N  N  F  L  L  Y  G  Y  F  A  Y  N  V  A  K  R  R  G  N  S  N  L  Y  E  G  F  G  L  M  G  F  H  T  S  S  T  A  S  S  S  T  G  T  A  H  D  V  S  F  G  S  S  T  C  G  V  Q  L  S  S  S  A  D  S  S  E  Q :   N  I  R  I  D  R  T  L  K  L  N  S  G  S  C  Y  L  P  H  P  D  K  E  D  T  G  G  E  D  A  H  F  I  C  S  D  E  Q  A  I  G  V  A  D  G  V  G  G  W  A  D  L  G  I  D  A  G  K  Y  A  R  E  L  M  S  N  S  V  A  A  I  Q  D  E  P  K  G  S  V  D  P  A  R  V  L  D  K  A  Y  T  C  T  K  A  K  G  S  S  T  A  C  I  I  A  L  T  D  Q  :  G  L  H  A  I  N  L  G  D  S  G  F  I  V  V  R  D  G  S  T  V  F  R  S  P  V  Q  Q  H  D  F  N  F  T  Y  Q  L  E  S  G  N  A  G  D  L  P  S  S  G  E  :  V  F  K  I  P  V  A  Q  G  D  V  I  I  A  G  T  D  G  L  F  D  N  L  Y  N  N  D  I  N  A  I  V  V  H  A  T  R  A  G  L  G  P  Q  V  T  A  Q  K  I  A  A  L  A  R  Q  R  A  Q  D  K  N  R  Q  T  P  F  S  S  A  A  Q  E  A  G  F  R  Y  Y  G  G  K  L  D  D  I  T  V  V  V  S  Y  I  S  S  D  R  N  :  E  R  S  N  S  L  K  M  *  L  R  A  F  V  S  C  F  G  S  P  A  S  V  Y  S  L  Q  P  T  G  F  K  L  H  L  M  G  M  S  N  L  C  L  Y  R  V  N  C  L  E  D  H  F  Y  F  *  C  T  S  F  L  A  I  Y  L  L  F  P  T  Q  C  I  T  H  T  S  E  E  G  R  W  Q  T  T  S  S  L  S  P  S  L  P  L  A  E  R  S  Y  E  C  *  S  C  I  W  N  R  C  R  Q  K  S  A  *  F  R  F  F  L  S  G  D  C  W  F  P  I  E  L  L  V  R  T  Y  S  Y  L  Q  H  *  A  F  F  N  S  W  K  P  N  S  V  I  F  F  Q  C  N  S  I  L  G  H  D  F  P  T  G  C  K  *  M  S  I  S  P  L  F  P  M   </first_frame>
            <second_frame>  D  Y  *  G  L  L  V  G  E  D  *  L  *  A  L  *  A  Q  L  K  R  E  K  E  R  G  E  R  S  L  *  P  N  K  L  S  R  F  I  *  R  Q  I  K  L  H  L  G  A  F  K  E  T  N  C  F  E  L  L  S  F  F  I  C  L  F  V  I  L  Y  G  F  C  H  L  G  V  C  F  L  Q  L  L  F  I  K  :  *  V  S  G  F  S  K  L  Y  W  R  R  R  V  V  H  E  L  M  L  D  I  K  C  T  E  R  Y  D  S  F  C  V  *  *  W  L  L  C  F  F  L  *  R  G  A  S  Q  S  A  V  V  N  K  P  I  C  R  V  T  I  F  L  D  *  A  G  L  L  D  R  D  S  R  N  P  Y  L  G  K  K  V  G  S  R  I  R  L  R  F  W  L  P  K  G  D  C  C  L  A  I  Q  S  A  S  I  Q  Y  H  L  Q  E  Q  L  T  *  M  C  L  S  G  L  E  P  *  L  P  H  R  R  I  C  T  *  Q  T  R  K  R  I  F  L  *  L  E  L  F  L  V  Q  F  Q  F  L  L  C  Q  D  Q  H  F  T  S  V  A  I  T  L  I  A  *  Y  W  T  R  L  K  V  C  L  T  A  T  L  T  K  H  L  W  K  S  V  V  L  E  L  V  L  L  A  V  P  Q  A  K  *  L  Q  D  I  S  M  V  F  F  L  *  I  I  L  L  P  L  I  A  I  K  A  L  I  I  V  E  K  P  A  *  V  *  E  T  K  I  S  P  T  T  F  Y  F  T  D  I  S  H  T  M  W  Q  R  D  G  E  I  L  I  Y  M  K  A  L  V  *  W  G  S  I  L  H  Q  L  L  L  L  L  L  A  L  L  M  M  C  H  L  V  A  L  R  V  G  C  S  S  Q  V  Q  Q  I  H  L  N   : R  I  S  A  L  T  E  P  *  N  *  I  P  D  H  V  T  C  L  I  L  I  K  K  I  L  V  E  R  M  L  I  L  F  A  V  M  N  K  Q  L  V  *  L  M  V  L  V  V  G  L  I  L  V  L  M  L  G  S  M  H  E  S  *  C  R  T  Q  W  P  Q  F  K  M  S  Q  K  V  Q  W  T  Q  P  E  S  S  I  K  L  I  H  A  Q  K  P  K  V  P  Q  L  P  V  *  L  P  S  Q  I  R :   V  C  M  L  L  I  *  E  I  A  D  S  L  W  S  E  M  D  L  L  F  S  D  P  L  C  S  S  M  I  S  I  S  R  I  N  *  R  V  V  M  L  V  T  Y  Q  V  L  E  R :   S  S  K  Y  Q  W  H  K  E  M  L  *  *  L  V  L  M  G  C  L  T  I  C  T  T  M  I  L  M  Q  S  S  F  M  Q  R  E  L  A  *  G  H  R  *  Q  L  R  R  *  L  H  *  L  G  K  E  H  R  I  K  T  G  R  P  L  S  L  L  Q  L  K  K  L  G  S  V  T  M  E  G  S  W  T  I  *  L  W  L  Y  P  T  *  A  V  T  E  T :   K  D  L  T  A  *  R  C  S  *  E  L  S  F  L  A  L  D  R  L  L  R  S  T  A  Y  S  L  Q  V  L  S  S  I  *  W  G  C  Q  I  F  A  Y  I  V  *  T  V  S  K  I  T  F  T  S  D  V  L  A  S  W  Q  F  T  S  S  F  P  L  N  A  L  H  T  Q  A  K  K  V  D  G  K  P  L  P  P  S  L  P  P  S  R  *  R  K  D  H  M  S  A  D  H  V  Y  G  I  D  V  D  R  K  V  L  D  L  G  F  F  F  L  E  I  V  G  F  P  *  N  C  *  L  G  H  T  V  T  C  S  I  K  L  S  S  I  L  G  N  Q  I  L  L  S  F  S  S  V  I  V  F  L  D  M  I  F  P  L  A  V  N  K  *  V  F  L  L  C  S  L  C  </second_frame>
            <third_frame>   I  I  R  V  C  W  L  G  K  I  N  C  E  P  F  K  L  S  S  R  E  R  K  R  E  E  R  E  A  S  N  L  T  N  S  Q  D  S  Y  E  G  K  S  S  Y  I  W  G  H  L  K  K  Q  I  V  L  S  S  *  V  F  L  F  V  C  L  *  F  Y  M  D  F  V  I  W  V  F  A  S  C  N  Y  Y  S  *  S :   R  C  L  D  S  Q  S  Y  I  G  E  G  G  *  C  M  S  *  C  L  I  L  N  V  L  S  V  M  I  V  F  V  Y  S  S  G  C  C  V  F  S  Y  K  E  V  Q  A  N  Q  L  W  L  I  S  R  Y  A  E  *  L  S  F  *  I  K  P  G  C  *  T  G  T  P  E  I  H  I  W  E  R  K  W  A  P  G  F  G  *  D  F  G  C  P  R  E  I  V  V  W  Q  F  K  V  L  L  F  S  T  I  C  K  S  N  *  P  E  C  A  C  P  A  W  N  L  S  C  R  T  G  E  F  A  R  S  K  P  E  K  E  Y  F  C  S  W  S  Y  F  S  C  S  F  N  S  F  C  V  R  T  S  I  S  H  L  W  L  S  H  *  S  R  D  I  G  P  G  *  K  F  V  *  Q  R  L  S  Q  S  T  Y  G  N  L  W  F  S  N  L  S  S  W  L  F  L  K  Q  N  D  F  K  T  S  Q  W  C  S  F  C  K  *  S  Y  Y  L  L  *  Q  *  K  L  *  *  L  *  K  S  Q  H  E  F  E  K  Q  K  S  A  Q  Q  L  F  T  L  R  I  F  R  I  Q  C  G  K  E  T  G  K  F  *  S  I  *  R  L  W  F  D  G  V  P  Y  F  I  N  C  F  F  F  Y  W  H  C  S  *  C  V  I  W  *  L  Y  V  W  G  A  A  L  K  F  S  R  F  I  *  T  :  E  Y  P  H  *  Q  N  P  E  T  K  F  R  I  M  L  P  A  S  S  *  *  R  R  Y  W  W  R  G  C  S  F  Y  L  Q  *  *  T  S  N  W  C  S  *  W  C  W  W  L  G  *  S  W  Y  *  C  W  E  V  C  T  R  A  N  V  E  L  S  G  R  N  S  R  *  A  K  R  F  S  G  P  S  Q  S  P  R  *  S  L  Y  M  H  K  S  Q  R  F  L  N  C  L  Y  N  C  P  H  R  S   : G  S  A  C  Y  *  F  R  R  *  R  I  H  C  G  Q  R  W  I  Y  C  F  Q  I  P  C  A  A  A  *  F  Q  F  H  V  S  T  R  E  W  *  C  W  *  L  T  K  F  W  R   : G  L  Q  N  T  S  G  T  R  R  C  Y  N  S  W  Y  *  W  V  V  *  Q  F  V  Q  Q  *  Y  *  C  N  R  R  S  C  N  E  S  W  L  R  A  T  G  D  S  S  E  D  S  C  I  S  S  A  K  S  T  G  *  K  Q  A  D  P  F  L  F  C  S  S  R  S  W  V  P  L  L  W  R  E  A  G  R  Y  N  C  G  C  I  L  H  K  Q  *  Q  K   : R  K  I  *  Q  L  K  D  V  V  K  S  F  R  F  L  L  W  I  A  C  F  G  L  Q  P  T  A  Y  R  F  *  A  P  F  D  G  D  V  K  S  L  L  I  S  C  E  L  S  R  R  S  L  L  L  L  M  Y  *  L  L  G  N  L  P  P  L  S  H  S  M  H  Y  T  H  K  R  R  R  *  M  A  N  H  F  L  P  L  S  L  P  P  V  S  G  K  I  I  *  V  L  I  M  Y  M  E  *  M  *  T  E  K  C  L  I  *  V  F  S  F  W  R  L  L  V  S  H  R  I  A  S  *  D  I  Q  L  L  A  A  L  S  F  L  Q  F  L  E  T  K  F  C  Y  L  F  P  V  *  *  Y  S  W  T  *  F  S  H  W  L  *  I  N  E  Y  F  S  F  V  P  Y  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0079B07.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54333" stop="53561"/>
                    <exon start="52521" stop="52197"/>
                    <exon start="52109" stop="51960"/>
                    <exon start="51297" stop="51007"/>
                    <exon start="50445" stop="50419"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1563</number_coding_nucleotides>
                  <number_encoded_amino_acids>521</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ADMPSNYLFRLSRAARQGLQKSISGKESGLQDSVEILVAQGRLLFGNSKCFYSVPFARATDLNVLVRPGTLAAAQANLHVANQKKNISVVGAISRAVSIPSVSGPAFHICGYHIDRVILDPAESLSDSDSHKAPMEICGSRTCPPGCSSSKMTSRHLNGVLSVNNPITSYSNKSFDNCRKASMSLRNKNQPNNFLLYGYFAYNVAKRRGNSNLYEGFGLMGFHTSSTASSSTGTAHDVSFGSSTCGVQLSSSADSSEQNIRIDRTLKLNSGSCYLPHPDKEDTGGEDAHFICSDEQAIGVADGVGGWADLGIDAGKYARELMSNSVAAIQDEPKGSVDPARVLDKAYTCTKAKGSSTACIIALTDQGLHAINLGDSGFIVVRDGSTVFRSPVQQHDFNFTYQLESGNAGDLPSSGEVFKIPVAQGDVIIAGTDGLFDNLYNNDINAIVVHATRAGLGPQVTAQKIAALARQRAQDKNRQTPFSSAAQEAGFRYYGGKLDDITVVVSYISSDRNERSNSLKM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="55688" e_stop="55430"/>
            <exon e_start="54491" e_stop="53561"/>
            <exon e_start="52521" e_stop="52197"/>
            <exon e_start="52109" e_stop="51960"/>
            <exon e_start="51297" e_stop="51007"/>
            <exon e_start="50445" e_stop="49907"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.849" acc_prob="0.865" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.910" e_score="0.975"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.586" acc_prob="0.747" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="55688" e_stop="55430" e_length="259"/>
          </exon>
          <intron i_serial="1" don_prob="0.849" acc_prob="0.865">
            <gDNA_intron_boundary i_start="55429" i_stop="54492" i_length="938"/>
          </intron>
          <exon e_serial="2" e_score="0.975">
            <gDNA_exon_boundary e_start="54491" e_stop="53561" e_length="931"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.910">
            <gDNA_intron_boundary i_start="53560" i_stop="52522" i_length="1039"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52521" e_stop="52197" e_length="325"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="52196" i_stop="52110" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52109" e_stop="51960" e_length="150"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.991">
            <gDNA_intron_boundary i_start="51959" i_stop="51298" i_length="662"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="51297" e_stop="51007" e_length="291"/>
          </exon>
          <intron i_serial="5" don_prob="0.586" acc_prob="0.747">
            <gDNA_intron_boundary i_start="51006" i_stop="50446" i_length="561"/>
          </intron>
          <exon e_serial="6" e_score="0.992">
            <gDNA_exon_boundary e_start="50445" e_stop="49907" e_length="539"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55688" stop="55430"/>
              <exon start="54491" stop="54223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54378" stop="54071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338171" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54249" stop="53561"/>
              <exon start="52521" stop="52460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54249" stop="53663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54118" stop="53561"/>
              <exon start="52521" stop="52411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53977" stop="53753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53624" stop="53561"/>
              <exon start="52521" stop="52197"/>
              <exon start="52109" stop="51960"/>
              <exon start="51297" stop="51192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52330" stop="52197"/>
              <exon start="52109" stop="51960"/>
              <exon start="51297" stop="51064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52314" stop="52197"/>
              <exon start="52109" stop="51960"/>
              <exon start="51297" stop="51087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52277" stop="52197"/>
              <exon start="52109" stop="51960"/>
              <exon start="51297" stop="51007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52275" stop="52197"/>
              <exon start="52109" stop="51960"/>
              <exon start="51297" stop="51007"/>
              <exon start="50445" stop="50315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52275" stop="52197"/>
              <exon start="52109" stop="51960"/>
              <exon start="51297" stop="51007"/>
              <exon start="50445" stop="50320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52231" stop="52197"/>
              <exon start="52109" stop="51960"/>
              <exon start="51297" stop="51007"/>
              <exon start="50445" stop="50215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52231" stop="52197"/>
              <exon start="52109" stop="51960"/>
              <exon start="51297" stop="51007"/>
              <exon start="50445" stop="50229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50383" stop="49907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357800" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGATTATTAGGGTTTGTTGGTTGGGGAAGATTAACTGTGAGCCCTTTAAGCTCAGCTCAAGAGAGAGAAAGAGAGAGGAGAGAGAAGCCTCTAACCTAACAAACTCTCAAGATTCATATGAAGGCAAATCAAGTTACATTTGGGGGCATTTAAAGAAACAAATTGTTTTGAGCTCTTAAGTTTTTTTATTTGTTTGTTTGTGATTTTATATGGATTTTGTCATCTGGGTGTTTGCTTCCTGCAATTATTATTCATAAAG : GTGTCTGGATTCTCAAAGTTATATTGGAGAAGGAGGGTAGTGCATGAGTTGATGCTTGATATTAAATGTACTGAGCGTTATGATAGTTTTTGTGTATAGTAGTGGTTGTTGTGTTTTTTCCTATAAAGAGGTGCAAGCCAATCAGCTGTGGTTAATAAGCCGATATGCCGAGTAACTATCTTTTTAGATTAAGCCGGGCTGCTAGACAGGGACTCCAGAAATCCATATCTGGGAAAGAAAGTGGGCTCCAGGATTCGGTTGAGATTTTGGTTGCCCAAGGGAGATTGTTGTTTGGCAATTCAAAGTGCTTCTATTCAGTACCATTTGCAAGAGCAACTGACCTGAATGTGCTTGTCCGGCCTGGAACCTTAGCTGCCGCACAGGCGAATTTGCACGTAGCAAACCAGAAAAAGAATATTTCTGTAGTTGGAGCTATTTCTCGTGCAGTTTCAATTCCTTCTGTGTCAGGACCAGCATTTCACATCTGTGGCTATCACATTGATCGCGTGATATTGGACCCGGCTGAAAGTTTGTCTGACAGCGACTCTCACAAAGCACCTATGGAAATCTGTGGTTCTCGAACTTGTCCTCCTGGCTGTTCCTCAAGCAAAATGACTTCAAGACATCTCAATGGTGTTCTTTCTGTAAATAATCCTATTACCTCTTATAGCAATAAAAGCTTTGATAATTGTAGAAAAGCCAGCATGAGTTTGAGAAACAAAAATCAGCCCAACAACTTTTTACTTTACGGATATTTCGCATACAATGTGGCAAAGAGACGGGGAAATTCTAATCTATATGAAGGCTTTGGTTTGATGGGGTTCCATACTTCATCAACTGCTTCTTCTTCTACTGGCACTGCTCATGATGTGTCATTTGGTAGCTCTACGTGTGGGGTGCAGCTCTCAAGTTCAGCAGATTCATCTGAACA : GAATATCCGCATTGACAGAACCCTGAAACTAAATTCCGGATCATGTTACCTGCCTCATCCTGATAAAGAAGATACTGGTGGAGAGGATGCTCATTTTATTTGCAGTGATGAACAAGCAATTGGTGTAGCTGATGGTGTTGGTGGTTGGGCTGATCTTGGTATTGATGCTGGGAAGTATGCACGAGAGCTAATGTCGAACTCAGTGGCCGCAATTCAAGATGAGCCAAAAGGTTCAGTGGACCCAGCCAGAGTCCTCGATAAAGCTTATACATGCACAAAAGCCAAAGGTTCCTCAACTGCCTGTATAATTGCCCTCACAGATCAG : GGTCTGCATGCTATTAATTTAGGAGATAGCGGATTCATTGTGGTCAGAGATGGATCTACTGTTTTCAGATCCCCTGTGCAGCAGCATGATTTCAATTTCACGTATCAACTAGAGAGTGGTAATGCTGGTGACTTACCAAGTTCTGGAGAG : GTCTTCAAAATACCAGTGGCACAAGGAGATGTTATAATAGCTGGTACTGATGGGTTGTTTGACAATTTGTACAACAATGATATTAATGCAATCGTCGTTCATGCAACGAGAGCTGGCTTAGGGCCACAGGTGACAGCTCAGAAGATAGCTGCATTAGCTCGGCAAAGAGCACAGGATAAAAACAGGCAGACCCCTTTCTCTTCTGCAGCTCAAGAAGCTGGGTTCCGTTACTATGGAGGGAAGCTGGACGATATAACTGTGGTTGTATCCTACATAAGCAGTGACAGAAAC : GAAAGATCTAACAGCTTAAAGATGTAGTTAAGAGCTTTCGTTTCTTGCTTTGGATCGCCTGCTTCGGTCTACAGCCTACAGCCTACAGGTTTTAAGCTCCATTTGATGGGGATGTCAAATCTTTGCTTATATCGTGTGAACTGTCTCGAAGATCACTTTTACTTCTGATGTACTAGCTTCTTGGCAATTTACCTCCTCTTTCCCACTCAATGCATTACACACACAAGCGAAGAAGGTAGATGGCAAACCACTTCCTCCCTCTCTCCCTCCCTCCCGTTAGCGGAAAGATCATATGAGTGCTGATCATGTATATGGAATAGATGTAGACAGAAAAGTGCTTGATTTAGGTTTTTTCTTTCTGGAGATTGTTGGTTTCCCATAGAATTGCTAGTTAGGACATACAGTTACTTGCAGCATTAAGCTTTCTTCAATTCTTGGAAACCAAATTCTGTTATCTTTTTCCAGTGTAATAGTATTCTTGGACATGATTTTCCCACTGGCTGTAAATAAATGAGTATTTCTCCTTTGTTCCCTATGTT</gDNA_template>
            <first_frame> *  L  L  G  F  V  G  W  G  R  L  T  V  S  P  L  S  S  A  Q  E  R  E  R  E  R  R  E  K  P  L  T  *  Q  T  L  K  I  H  M  K  A  N  Q  V  T  F  G  G  I  *  R  N  K  L  F  *  A  L  K  F  F  Y  L  F  V  C  D  F  I  W  I  L  S  S  G  C  L  L  P  A  I  I  I  H  K   : G  V  W  I  L  K  V  I  L  E  K  E  G  S  A  *  V  D  A  *  Y  *  M  Y  *  A  L  *  *  F  L  C  I  V  V  V  V  V  F  F  P  I  K  R  C  K  P  I  S  C  G  *  *  A  D  M  P  S  N  Y  L  F  R  L  S  R  A  A  R  Q  G  L  Q  K  S  I  S  G  K  E  S  G  L  Q  D  S  V  E  I  L  V  A  Q  G  R  L  L  F  G  N  S  K  C  F  Y  S  V  P  F  A  R  A  T  D  L  N  V  L  V  R  P  G  T  L  A  A  A  Q  A  N  L  H  V  A  N  Q  K  K  N  I  S  V  V  G  A  I  S  R  A  V  S  I  P  S  V  S  G  P  A  F  H  I  C  G  Y  H  I  D  R  V  I  L  D  P  A  E  S  L  S  D  S  D  S  H  K  A  P  M  E  I  C  G  S  R  T  C  P  P  G  C  S  S  S  K  M  T  S  R  H  L  N  G  V  L  S  V  N  N  P  I  T  S  Y  S  N  K  S  F  D  N  C  R  K  A  S  M  S  L  R  N  K  N  Q  P  N  N  F  L  L  Y  G  Y  F  A  Y  N  V  A  K  R  R  G  N  S  N  L  Y  E  G  F  G  L  M  G  F  H  T  S  S  T  A  S  S  S  T  G  T  A  H  D  V  S  F  G  S  S  T  C  G  V  Q  L  S  S  S  A  D  S  S  E  Q :   N  I  R  I  D  R  T  L  K  L  N  S  G  S  C  Y  L  P  H  P  D  K  E  D  T  G  G  E  D  A  H  F  I  C  S  D  E  Q  A  I  G  V  A  D  G  V  G  G  W  A  D  L  G  I  D  A  G  K  Y  A  R  E  L  M  S  N  S  V  A  A  I  Q  D  E  P  K  G  S  V  D  P  A  R  V  L  D  K  A  Y  T  C  T  K  A  K  G  S  S  T  A  C  I  I  A  L  T  D  Q  :  G  L  H  A  I  N  L  G  D  S  G  F  I  V  V  R  D  G  S  T  V  F  R  S  P  V  Q  Q  H  D  F  N  F  T  Y  Q  L  E  S  G  N  A  G  D  L  P  S  S  G  E  :  V  F  K  I  P  V  A  Q  G  D  V  I  I  A  G  T  D  G  L  F  D  N  L  Y  N  N  D  I  N  A  I  V  V  H  A  T  R  A  G  L  G  P  Q  V  T  A  Q  K  I  A  A  L  A  R  Q  R  A  Q  D  K  N  R  Q  T  P  F  S  S  A  A  Q  E  A  G  F  R  Y  Y  G  G  K  L  D  D  I  T  V  V  V  S  Y  I  S  S  D  R  N  :  E  R  S  N  S  L  K  M  *  L  R  A  F  V  S  C  F  G  S  P  A  S  V  Y  S  L  Q  P  T  G  F  K  L  H  L  M  G  M  S  N  L  C  L  Y  R  V  N  C  L  E  D  H  F  Y  F  *  C  T  S  F  L  A  I  Y  L  L  F  P  T  Q  C  I  T  H  T  S  E  E  G  R  W  Q  T  T  S  S  L  S  P  S  L  P  L  A  E  R  S  Y  E  C  *  S  C  I  W  N  R  C  R  Q  K  S  A  *  F  R  F  F  L  S  G  D  C  W  F  P  I  E  L  L  V  R  T  Y  S  Y  L  Q  H  *  A  F  F  N  S  W  K  P  N  S  V  I  F  F  Q  C  N  S  I  L  G  H  D  F  P  T  G  C  K  *  M  S  I  S  P  L  F  P  M   </first_frame>
            <second_frame>  D  Y  *  G  L  L  V  G  E  D  *  L  *  A  L  *  A  Q  L  K  R  E  K  E  R  G  E  R  S  L  *  P  N  K  L  S  R  F  I  *  R  Q  I  K  L  H  L  G  A  F  K  E  T  N  C  F  E  L  L  S  F  F  I  C  L  F  V  I  L  Y  G  F  C  H  L  G  V  C  F  L  Q  L  L  F  I  K  :  V  S  G  F  S  K  L  Y  W  R  R  R  V  V  H  E  L  M  L  D  I  K  C  T  E  R  Y  D  S  F  C  V  *  *  W  L  L  C  F  F  L  *  R  G  A  S  Q  S  A  V  V  N  K  P  I  C  R  V  T  I  F  L  D  *  A  G  L  L  D  R  D  S  R  N  P  Y  L  G  K  K  V  G  S  R  I  R  L  R  F  W  L  P  K  G  D  C  C  L  A  I  Q  S  A  S  I  Q  Y  H  L  Q  E  Q  L  T  *  M  C  L  S  G  L  E  P  *  L  P  H  R  R  I  C  T  *  Q  T  R  K  R  I  F  L  *  L  E  L  F  L  V  Q  F  Q  F  L  L  C  Q  D  Q  H  F  T  S  V  A  I  T  L  I  A  *  Y  W  T  R  L  K  V  C  L  T  A  T  L  T  K  H  L  W  K  S  V  V  L  E  L  V  L  L  A  V  P  Q  A  K  *  L  Q  D  I  S  M  V  F  F  L  *  I  I  L  L  P  L  I  A  I  K  A  L  I  I  V  E  K  P  A  *  V  *  E  T  K  I  S  P  T  T  F  Y  F  T  D  I  S  H  T  M  W  Q  R  D  G  E  I  L  I  Y  M  K  A  L  V  *  W  G  S  I  L  H  Q  L  L  L  L  L  L  A  L  L  M  M  C  H  L  V  A  L  R  V  G  C  S  S  Q  V  Q  Q  I  H  L  N   : R  I  S  A  L  T  E  P  *  N  *  I  P  D  H  V  T  C  L  I  L  I  K  K  I  L  V  E  R  M  L  I  L  F  A  V  M  N  K  Q  L  V  *  L  M  V  L  V  V  G  L  I  L  V  L  M  L  G  S  M  H  E  S  *  C  R  T  Q  W  P  Q  F  K  M  S  Q  K  V  Q  W  T  Q  P  E  S  S  I  K  L  I  H  A  Q  K  P  K  V  P  Q  L  P  V  *  L  P  S  Q  I  R :   V  C  M  L  L  I  *  E  I  A  D  S  L  W  S  E  M  D  L  L  F  S  D  P  L  C  S  S  M  I  S  I  S  R  I  N  *  R  V  V  M  L  V  T  Y  Q  V  L  E  R :   S  S  K  Y  Q  W  H  K  E  M  L  *  *  L  V  L  M  G  C  L  T  I  C  T  T  M  I  L  M  Q  S  S  F  M  Q  R  E  L  A  *  G  H  R  *  Q  L  R  R  *  L  H  *  L  G  K  E  H  R  I  K  T  G  R  P  L  S  L  L  Q  L  K  K  L  G  S  V  T  M  E  G  S  W  T  I  *  L  W  L  Y  P  T  *  A  V  T  E  T :   K  D  L  T  A  *  R  C  S  *  E  L  S  F  L  A  L  D  R  L  L  R  S  T  A  Y  S  L  Q  V  L  S  S  I  *  W  G  C  Q  I  F  A  Y  I  V  *  T  V  S  K  I  T  F  T  S  D  V  L  A  S  W  Q  F  T  S  S  F  P  L  N  A  L  H  T  Q  A  K  K  V  D  G  K  P  L  P  P  S  L  P  P  S  R  *  R  K  D  H  M  S  A  D  H  V  Y  G  I  D  V  D  R  K  V  L  D  L  G  F  F  F  L  E  I  V  G  F  P  *  N  C  *  L  G  H  T  V  T  C  S  I  K  L  S  S  I  L  G  N  Q  I  L  L  S  F  S  S  V  I  V  F  L  D  M  I  F  P  L  A  V  N  K  *  V  F  L  L  C  S  L  C  </second_frame>
            <third_frame>   I  I  R  V  C  W  L  G  K  I  N  C  E  P  F  K  L  S  S  R  E  R  K  R  E  E  R  E  A  S  N  L  T  N  S  Q  D  S  Y  E  G  K  S  S  Y  I  W  G  H  L  K  K  Q  I  V  L  S  S  *  V  F  L  F  V  C  L  *  F  Y  M  D  F  V  I  W  V  F  A  S  C  N  Y  Y  S  *  R :   C  L  D  S  Q  S  Y  I  G  E  G  G  *  C  M  S  *  C  L  I  L  N  V  L  S  V  M  I  V  F  V  Y  S  S  G  C  C  V  F  S  Y  K  E  V  Q  A  N  Q  L  W  L  I  S  R  Y  A  E  *  L  S  F  *  I  K  P  G  C  *  T  G  T  P  E  I  H  I  W  E  R  K  W  A  P  G  F  G  *  D  F  G  C  P  R  E  I  V  V  W  Q  F  K  V  L  L  F  S  T  I  C  K  S  N  *  P  E  C  A  C  P  A  W  N  L  S  C  R  T  G  E  F  A  R  S  K  P  E  K  E  Y  F  C  S  W  S  Y  F  S  C  S  F  N  S  F  C  V  R  T  S  I  S  H  L  W  L  S  H  *  S  R  D  I  G  P  G  *  K  F  V  *  Q  R  L  S  Q  S  T  Y  G  N  L  W  F  S  N  L  S  S  W  L  F  L  K  Q  N  D  F  K  T  S  Q  W  C  S  F  C  K  *  S  Y  Y  L  L  *  Q  *  K  L  *  *  L  *  K  S  Q  H  E  F  E  K  Q  K  S  A  Q  Q  L  F  T  L  R  I  F  R  I  Q  C  G  K  E  T  G  K  F  *  S  I  *  R  L  W  F  D  G  V  P  Y  F  I  N  C  F  F  F  Y  W  H  C  S  *  C  V  I  W  *  L  Y  V  W  G  A  A  L  K  F  S  R  F  I  *  T  :  E  Y  P  H  *  Q  N  P  E  T  K  F  R  I  M  L  P  A  S  S  *  *  R  R  Y  W  W  R  G  C  S  F  Y  L  Q  *  *  T  S  N  W  C  S  *  W  C  W  W  L  G  *  S  W  Y  *  C  W  E  V  C  T  R  A  N  V  E  L  S  G  R  N  S  R  *  A  K  R  F  S  G  P  S  Q  S  P  R  *  S  L  Y  M  H  K  S  Q  R  F  L  N  C  L  Y  N  C  P  H  R  S   : G  S  A  C  Y  *  F  R  R  *  R  I  H  C  G  Q  R  W  I  Y  C  F  Q  I  P  C  A  A  A  *  F  Q  F  H  V  S  T  R  E  W  *  C  W  *  L  T  K  F  W  R   : G  L  Q  N  T  S  G  T  R  R  C  Y  N  S  W  Y  *  W  V  V  *  Q  F  V  Q  Q  *  Y  *  C  N  R  R  S  C  N  E  S  W  L  R  A  T  G  D  S  S  E  D  S  C  I  S  S  A  K  S  T  G  *  K  Q  A  D  P  F  L  F  C  S  S  R  S  W  V  P  L  L  W  R  E  A  G  R  Y  N  C  G  C  I  L  H  K  Q  *  Q  K   : R  K  I  *  Q  L  K  D  V  V  K  S  F  R  F  L  L  W  I  A  C  F  G  L  Q  P  T  A  Y  R  F  *  A  P  F  D  G  D  V  K  S  L  L  I  S  C  E  L  S  R  R  S  L  L  L  L  M  Y  *  L  L  G  N  L  P  P  L  S  H  S  M  H  Y  T  H  K  R  R  R  *  M  A  N  H  F  L  P  L  S  L  P  P  V  S  G  K  I  I  *  V  L  I  M  Y  M  E  *  M  *  T  E  K  C  L  I  *  V  F  S  F  W  R  L  L  V  S  H  R  I  A  S  *  D  I  Q  L  L  A  A  L  S  F  L  Q  F  L  E  T  K  F  C  Y  L  F  P  V  *  *  Y  S  W  T  *  F  S  H  W  L  *  I  N  E  Y  F  S  F  V  P  Y  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0079B07.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54333" stop="53561"/>
                    <exon start="52521" stop="52197"/>
                    <exon start="52109" stop="51960"/>
                    <exon start="51297" stop="51007"/>
                    <exon start="50445" stop="50419"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1563</number_coding_nucleotides>
                  <number_encoded_amino_acids>521</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ADMPSNYLFRLSRAARQGLQKSISGKESGLQDSVEILVAQGRLLFGNSKCFYSVPFARATDLNVLVRPGTLAAAQANLHVANQKKNISVVGAISRAVSIPSVSGPAFHICGYHIDRVILDPAESLSDSDSHKAPMEICGSRTCPPGCSSSKMTSRHLNGVLSVNNPITSYSNKSFDNCRKASMSLRNKNQPNNFLLYGYFAYNVAKRRGNSNLYEGFGLMGFHTSSTASSSTGTAHDVSFGSSTCGVQLSSSADSSEQNIRIDRTLKLNSGSCYLPHPDKEDTGGEDAHFICSDEQAIGVADGVGGWADLGIDAGKYARELMSNSVAAIQDEPKGSVDPARVLDKAYTCTKAKGSSTACIIALTDQGLHAINLGDSGFIVVRDGSTVFRSPVQQHDFNFTYQLESGNAGDLPSSGEVFKIPVAQGDVIIAGTDGLFDNLYNNDINAIVVHATRAGLGPQVTAQKIAALARQRAQDKNRQTPFSSAAQEAGFRYYGGKLDDITVVVSYISSDRNERSNSLKM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0079B07.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55567" stop="55430"/>
                    <exon start="54491" stop="54393"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RQIKLHLGAFKETNCFELLSFFICLFVILYGFCHLGVCFLQLLFIKVSGFSKLYWRRRVVHELMLDIKCTERYDSFCV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="56981" PGL_stop="56659"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56981" e_stop="56659"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="56981" e_stop="56659" e_length="323"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56981" stop="56659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56981" stop="56676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCCCGCTTTATACAAAAACAGAAACACAATATATACACTTCTATTGTATAAAGCTAGAAAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCTTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATCATATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAAAAATTATACACTTATGTGTATAAAGCGAGAGAG</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  I  A  R  R  Y  M  F  F  P  L  Y  T  K  T  E  T  Q  Y  I  H  F  Y  C  I  K  L  E  K  I  V  F  H  C  N  C  I  I  H  N  C  I  I  L  W  P  F  S  L  Q  Y  L  K  *  N  V  C  K  S  Y  N  *  V  Y  N  T  K  I  Y  I  F  A  C  V  Y  T  I  F  S  R  F  I  Q  N  R  N  K  N  Y  T  L  M  C  I  K  R  E   </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  Q  E  D  I  C  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  T  S  I  V  *  S  *  K  K  L  Y  F  T  A  I  V  *  F  T  I  V  *  F  F  G  L  F  L  C  N  I  *  S  K  M  F  V  N  H  I  I  K  C  I  T  R  R  Y  T  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  E  T  K  I  I  H  L  C  V  *  S  E  R  </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  V  F  P  A  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  A  R  K  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  S  L  A  F  F  S  A  I  F  E  V  K  C  L  *  I  I  *  L  S  V  *  H  E  D  I  H  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  Q  K  Q  K  L  Y  T  Y  V  Y  K  A  R  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0079B07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="67630" PGL_stop="70138"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67630" e_stop="67979"/>
            <exon e_start="68073" e_stop="70138"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.976" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="67630" e_stop="67979" e_length="350"/>
          </exon>
          <intron i_serial="1" don_prob="0.976" acc_prob="0.997">
            <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="68073" e_stop="70138" e_length="2066"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67630" stop="67979"/>
              <exon start="68073" stop="68292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67636" stop="67979"/>
              <exon start="68073" stop="68459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67636" stop="67979"/>
              <exon start="68073" stop="68415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67636" stop="67979"/>
              <exon start="68073" stop="68376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67636" stop="67979"/>
              <exon start="68073" stop="68303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67636" stop="67979"/>
              <exon start="68073" stop="68290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67636" stop="67979"/>
              <exon start="68073" stop="68265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67636" stop="67979"/>
              <exon start="68073" stop="68187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67636" stop="67979"/>
              <exon start="68073" stop="68175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316298" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67636" stop="67970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67638" stop="67979"/>
              <exon start="68073" stop="68103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67639" stop="67979"/>
              <exon start="68073" stop="68246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67640" stop="67979"/>
              <exon start="68073" stop="68602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67640" stop="67979"/>
              <exon start="68073" stop="68523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67641" stop="67979"/>
              <exon start="68073" stop="68135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67642" stop="67979"/>
              <exon start="68073" stop="68558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67642" stop="67979"/>
              <exon start="68073" stop="68324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67642" stop="67979"/>
              <exon start="68073" stop="68271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67642" stop="67979"/>
              <exon start="68073" stop="68250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67643" stop="67979"/>
              <exon start="68073" stop="68547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67643" stop="67979"/>
              <exon start="68073" stop="68503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67643" stop="67979"/>
              <exon start="68073" stop="68450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67643" stop="67979"/>
              <exon start="68073" stop="68423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67643" stop="67979"/>
              <exon start="68073" stop="68417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67643" stop="67979"/>
              <exon start="68073" stop="68415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67643" stop="67979"/>
              <exon start="68073" stop="68401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67643" stop="67979"/>
              <exon start="68073" stop="68392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67643" stop="67979"/>
              <exon start="68073" stop="68376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67643" stop="67979"/>
              <exon start="68073" stop="68370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67643" stop="67979"/>
              <exon start="68073" stop="68324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67643" stop="67979"/>
              <exon start="68073" stop="68312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67643" stop="67979"/>
              <exon start="68073" stop="68310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67643" stop="67979"/>
              <exon start="68073" stop="68301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67643" stop="67979"/>
              <exon start="68073" stop="68296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67643" stop="67979"/>
              <exon start="68073" stop="68289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67643" stop="67979"/>
              <exon start="68073" stop="68289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67643" stop="67979"/>
              <exon start="68073" stop="68284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67643" stop="67979"/>
              <exon start="68073" stop="68283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67643" stop="67979"/>
              <exon start="68073" stop="68282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67643" stop="67979"/>
              <exon start="68073" stop="68282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67643" stop="67979"/>
              <exon start="68073" stop="68281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67643" stop="67979"/>
              <exon start="68073" stop="68281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67643" stop="67979"/>
              <exon start="68073" stop="68246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67643" stop="67979"/>
              <exon start="68073" stop="68191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67643" stop="67979"/>
              <exon start="68073" stop="68177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67643" stop="67979"/>
              <exon start="68073" stop="68177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67643" stop="67979"/>
              <exon start="68073" stop="68169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67643" stop="67979"/>
              <exon start="68073" stop="68158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67643" stop="67979"/>
              <exon start="68073" stop="68080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67643" stop="67970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67643" stop="67923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67645" stop="67979"/>
              <exon start="68073" stop="68339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67646" stop="67979"/>
              <exon start="68073" stop="68500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67646" stop="67979"/>
              <exon start="68073" stop="68416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67646" stop="67979"/>
              <exon start="68073" stop="68374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67646" stop="67979"/>
              <exon start="68073" stop="68302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67646" stop="67979"/>
              <exon start="68073" stop="68265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67646" stop="67979"/>
              <exon start="68073" stop="68247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331162" strand="+"/>
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              <exon start="68759" stop="69507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68804" stop="69266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68812" stop="69102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68845" stop="69622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68960" stop="69370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68979" stop="69634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69060" stop="69611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316733" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69274" stop="69855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69305" stop="69837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69341" stop="70097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69342" stop="69854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69353" stop="69969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69355" stop="70070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69356" stop="69855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69358" stop="70083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69362" stop="70138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69477" stop="70083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69478" stop="70014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69635" stop="70083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69646" stop="70115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299872" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCCAGTTTCATCTTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG : GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAGGTTATCATAGTTTAATTCGTTGTCTATTCTCAGCTTAATTATGAAAATTTGCATTAGTTTTACTGTTATGCATGCATATGTACGAGTAGATAATCAGACTGTAGAGAAAAGAGAGGATGTGTGAGGTTCTTTATTGTTGTTTGCCGGCCTTTGCCATGCCGGGTGCGCTCGCATGGCAGGTCACAAAACCTAATAAAGATGCGATTTTTGTGTTCGGAGGGGAGATGGTACGGGGTTTTTTGCCCGACTCTCCTCTCTGTGTCTGTCTTTGGCCTCCTTTCTTTTCTAGAACTGTCTGCAAGATCTATTCAGATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAATGAGGTTTAGCAGTTTTGACGATCTGAAAATTTGGGTTTGAGATACTGATCTCTCTTTTACTAATCAAATGGTGGGCTATTAAATGAGACTAGATTATTATTTGTTTCATCATCCATATTCTAAATCTTTGTCAAGTCTGTTAAATCAATATCTATCACTAATGCAAAAAGAAATCTGTGTACACGATTGCCATTTATTTATTTATCATCACTGCGAAAATTTCAATATGTAATTTATTATTACATTAAAGGCTGTGGAACTATCTTTGTATTTATTTTCTTGTTATAATTTGCAATGGTGGATTTCAATGGAGTGTTGTTGAGCTCATTCTGTTATCCTAGAGGGTGAATGTTTATTGGGGTATGATTCAGTAAGTTAATTGCTGGATTTTGTACAATTGTTGTTCCTCTGCTGGCCGGTTCTCTGTGCATGCTGACTTGGAAGTTGCTGTGCCATACTGCTATGGATCTGCTCCATGCTGAAATCAATTATTATGTTCTACTTTTGGACTTGTTTCCTTGATCACGCTCTTGGAATTTCCTGTTTTATATGCCGTCATATTTCTGGTGCAATCAAGTTTTATGTGGAAATTCTCAACTCTCTTTACCTGCACCATCTTCACTTGGAATACACAATGAGCAAACCCAATTGTCAGCTTCTTCGTTCTAGCAAGCCTGATAAGGAAGCATCTTGCAAGTGTGTTAGGATAACTATTGGAAACTTGCTTGACATTTCCGAAGTTTCTTGACTAAGTTGCTGCTGTCTGTGAATCATGGTACTCTCATCAAAAGCTGTAAACAATTTCTACGCTCTTGGAATTACCTGTTTTATATGCTGTCTGTGTTACCATTTTATTGTTGTCCTCGATCCATTTGTGCAAGGAATGTGCGCATTTTTGAAGCGGGCTATATTTGATGGAGTGTGATTACAACTTATTATTATGCCTTACTTGAGAAGTTGCTGTTATGTAGGCAGAAAAGTGGGGATATTTGCCATCTTTTGCTATGTATACTGTGCAAGTATACTTCTCTTCACTGCAGGGTTAACCACTAGGAAATATTGTTATCTGATATATTTGATTACTGGATCGTCTGTTGAGGTAATCTGTTCTTAAATGTTAGGTTGTTATGCTTGTTA</gDNA_template>
            <first_frame> F  Q  F  H  L  L  S  S  S  R  N  I  F  H  L  Q  I  S  L  *  A  F  L  C  F  *  I  G  M  Q  I  R  V  D  R  S  P  I  Y  S  L  S  M  V  S  T  C  I  G  H  H  F  R  A  N  R  N  R  *  C  R  F  I  I  S  E  V  F  R  Y  E  Y  C  S  G  Y  G  R  C  C  W  L  D  E  D  W  I  D  L  M  D  F  V  T  R  L  R  D  A  *  P  F  Q  E  V  L  G  D  L  R  *  F  F  E  F  Y  R :   L  S  S  F  Q  S  G  D  F  T  V  S  L  *  S  L  V  Q  L  D  I  T  G  V  L  F  M  L  D  L  G  D  G  K  R  Q  A  *  G  C  *  I  R  L  S  *  F  N  S  L  S  I  L  S  L  I  M  K  I  C  I  S  F  T  V  M  H  A  Y  V  R  V  D  N  Q  T  V  E  K  R  E  D  V  *  G  S  L  L  L  F  A  G  L  C  H  A  G  C  A  R  M  A  G  H  K  T  *  *  R  C  D  F  C  V  R  R  G  D  G  T  G  F  F  A  R  L  S  S  L  C  L  S  L  A  S  F  L  F  *  N  C  L  Q  D  L  F  R  *  T  S  H  Q  I  W  R  *  C  P  R  T  M  V  S  I  S  A  K  L  *  Q  R  S  T  F  S  M  D  R  Y  V  M  H  Y  *  Y  N  N  G  Q  A  N  S  R  N  I  Q  L  H  S  P  I  K  G  T  L  V  N  S  F  N  *  L  *  H  L  T  F  F  H  E  *  I  A  N  S  S  P  *  N  L  *  L  F  L  S  T  G  S  N  F  V  N  I  *  E  F  I  Q  P  T  Y  N  Y  *  L  I  Y  Q  M  K  *  Q  N  D  L  F  *  V  L  E  Q  F  N  S  K  S  N  L  F  H  R  D  I  R  *  S  N  H  L  R  I  M  I  N  *  H  L  *  L  N  I  S  G  V  N  *  F  S  K  *  G  L  A  V  L  T  I  *  K  F  G  F  E  I  L  I  S  L  L  L  I  K  W  W  A  I  K  *  D  *  I  I  I  C  F  I  I  H  I  L  N  L  C  Q  V  C  *  I  N  I  Y  H  *  C  K  K  K  S  V  Y  T  I  A  I  Y  L  F  I  I  T  A  K  I  S  I  C  N  L  L  L  H  *  R  L  W  N  Y  L  C  I  Y  F  L  V  I  I  C  N  G  G  F  Q  W  S  V  V  E  L  I  L  L  S  *  R  V  N  V  Y  W  G  M  I  Q  *  V  N  C  W  I  L  Y  N  C  C  S  S  A  G  R  F  S  V  H  A  D  L  E  V  A  V  P  Y  C  Y  G  S  A  P  C  *  N  Q  L  L  C  S  T  F  G  L  V  S  L  I  T  L  L  E  F  P  V  L  Y  A  V  I  F  L  V  Q  S  S  F  M  W  K  F  S  T  L  F  T  C  T  I  F  T  W  N  T  Q  *  A  N  P  I  V  S  F  F  V  L  A  S  L  I  R  K  H  L  A  S  V  L  G  *  L  L  E  T  C  L  T  F  P  K  F  L  D  *  V  A  A  V  C  E  S  W  Y  S  H  Q  K  L  *  T  I  S  T  L  L  E  L  P  V  L  Y  A  V  C  V  T  I  L  L  L  S  S  I  H  L  C  K  E  C  A  H  F  *  S  G  L  Y  L  M  E  C  D  Y  N  L  L  L  C  L  T  *  E  V  A  V  M  *  A  E  K  W  G  Y  L  P  S  F  A  M  Y  T  V  Q  V  Y  F  S  S  L  Q  G  *  P  L  G  N  I  V  I  *  Y  I  *  L  L  D  R  L  L  R  *  S  V  L  K  C  *  V  V  M  L  V  </first_frame>
            <second_frame>  S  S  F  I  F  S  P  L  P  A  I  S  F  I  S  R  S  P  Y  R  H  F  S  A  S  E  S  V  C  R  F  V  *  T  V  R  R  S  T  V  *  V  W  F  R  L  V  S  V  I  I  S  V  Q  I  V  T  D  S  A  D  L  S  F  L  R  Y  F  G  T  N  I  A  R  V  M  D  D  A  V  G  *  T  K  I  G  *  I  *  W  I  L  L  R  D  *  E  M  H  D  L  F  K  K  F  S  V  I  *  D  D  F  L  S  F  I   : G  C  H  R  F  N  L  V  I  L  P  Y  L  C  R  A  W  C  N  W  I  S  L  V  F  Y  L  C  *  I  S  G  M  V  N  G  K  L  E  V  V  R  *  G  Y  H  S  L  I  R  C  L  F  S  A  *  L  *  K  F  A  L  V  L  L  L  C  M  H  M  Y  E  *  I  I  R  L  *  R  K  E  R  M  C  E  V  L  Y  C  C  L  P  A  F  A  M  P  G  A  L  A  W  Q  V  T  K  P  N  K  D  A  I  F  V  F  G  G  E  M  V  R  G  F  L  P  D  S  P  L  C  V  C  L  W  P  P  F  F  S  R  T  V  C  K  I  Y  S  D  K  R  L  I  K  F  G  V  N  V  P  E  R  W  F  R  Y  P  Q  S  Y  S  S  A  L  P  F  Q  W  I  G  M  S  C  T  I  N  T  T  M  D  R  R  I  L  G  I  F  S  S  T  L  L  S  K  V  H  L  *  I  P  L  T  N  F  D  T  *  L  F  S  M  S  K  L  P  I  V  V  R  K  I  F  N  C  F  *  V  Q  V  V  I  L  L  T  Y  K  S  S  F  S  L  L  I  T  I  D  *  F  I  K  *  N  S  K  M  T  Y  F  E  Y  W  N  S  S  I  L  S  Q  I  C  F  T  E  I  *  D  N  L  T  I  C  E  *  *  *  I  N  I  C  S  L  I  Y  L  E  *  T  S  F  P  N  E  V  *  Q  F  *  R  S  E  N  L  G  L  R  Y  *  S  L  F  Y  *  S  N  G  G  L  L  N  E  T  R  L  L  F  V  S  S  S  I  F  *  I  F  V  K  S  V  K  S  I  S  I  T  N  A  K  R  N  L  C  T  R  L  P  F  I  Y  L  S  S  L  R  K  F  Q  Y  V  I  Y  Y  Y  I  K  G  C  G  T  I  F  V  F  I  F  L  L  *  F  A  M  V  D  F  N  G  V  L  L  S  S  F  C  Y  P  R  G  *  M  F  I  G  V  *  F  S  K  L  I  A  G  F  C  T  I  V  V  P  L  L  A  G  S  L  C  M  L  T  W  K  L  L  C  H  T  A  M  D  L  L  H  A  E  I  N  Y  Y  V  L  L  L  D  L  F  P  *  S  R  S  W  N  F  L  F  Y  M  P  S  Y  F  W  C  N  Q  V  L  C  G  N  S  Q  L  S  L  P  A  P  S  S  L  G  I  H  N  E  Q  T  Q  L  S  A  S  S  F  *  Q  A  *  *  G  S  I  L  Q  V  C  *  D  N  Y  W  K  L  A  *  H  F  R  S  F  L  T  K  L  L  L  S  V  N  H  G  T  L  I  K  S  C  K  Q  F  L  R  S  W  N  Y  L  F  Y  M  L  S  V  L  P  F  Y  C  C  P  R  S  I  C  A  R  N  V  R  I  F  E  A  G  Y  I  *  W  S  V  I  T  T  Y  Y  Y  A  L  L  E  K  L  L  L  C  R  Q  K  S  G  D  I  C  H  L  L  L  C  I  L  C  K  Y  T  S  L  H  C  R  V  N  H  *  E  I  L  L  S  D  I  F  D  Y  W  I  V  C  *  G  N  L  F  L  N  V  R  L  L  C  L  L </second_frame>
            <third_frame>   P  V  S  S  S  L  L  F  P  Q  Y  L  S  S  P  D  L  L  I  G  I  S  L  L  L  N  R  Y  A  D  S  C  R  P  F  A  D  L  Q  F  E  Y  G  F  D  L  Y  R  S  S  F  P  C  K  S  *  Q  I  V  P  I  Y  H  F  *  G  I  S  V  R  I  L  L  G  L  W  T  M  L  L  A  R  R  R  L  D  R  S  D  G  F  C  Y  E  I  E  R  C  M  T  F  S  R  S  S  R  *  S  E  M  I  F  *  V  L  S  :  V  V  I  V  S  I  W  *  F  Y  R  I  S  V  E  L  G  A  I  G  Y  H  W  C  S  I  Y  A  R  S  R  G  W  *  T  A  S  L  R  L  L  D  K  V  I  I  V  *  F  V  V  Y  S  Q  L  N  Y  E  N  L  H  *  F  Y  C  Y  A  C  I  C  T  S  R  *  S  D  C  R  E  K  R  G  C  V  R  F  F  I  V  V  C  R  P  L  P  C  R  V  R  S  H  G  R  S  Q  N  L  I  K  M  R  F  L  C  S  E  G  R  W  Y  G  V  F  C  P  T  L  L  S  V  S  V  F  G  L  L  S  F  L  E  L  S  A  R  S  I  Q  I  N  V  S  S  N  L  A  L  M  S  P  N  D  G  F  D  I  R  K  V  I  A  A  L  Y  L  F  N  G  *  V  C  H  A  L  L  I  Q  Q  W  T  G  E  F  *  E  Y  S  A  P  L  S  Y  Q  R  Y  T  C  E  F  L  *  L  T  L  T  L  N  F  F  P  *  V  N  C  Q  *  *  S  V  K  S  L  I  V  S  E  Y  R  *  *  F  C  *  H  I  R  V  H  S  A  Y  L  *  L  L  I  N  L  S  N  E  I  A  K  *  L  I  L  S  T  G  T  V  Q  F  *  V  K  S  V  S  Q  R  Y  K  I  I  *  P  F  A  N  N  D  K  L  T  S  V  A  *  Y  I  W  S  E  L  V  F  Q  M  R  F  S  S  F  D  D  L  K  I  W  V  *  D  T  D  L  S  F  T  N  Q  M  V  G  Y  *  M  R  L  D  Y  Y  L  F  H  H  P  Y  S  K  S  L  S  S  L  L  N  Q  Y  L  S  L  M  Q  K  E  I  C  V  H  D  C  H  L  F  I  Y  H  H  C  E  N  F  N  M  *  F  I  I  T  L  K  A  V  E  L  S  L  Y  L  F  S  C  Y  N  L  Q  W  W  I  S  M  E  C  C  *  A  H  S  V  I  L  E  G  E  C  L  L  G  Y  D  S  V  S  *  L  L  D  F  V  Q  L  L  F  L  C  W  P  V  L  C  A  C  *  L  G  S  C  C  A  I  L  L  W  I  C  S  M  L  K  S  I  I  M  F  Y  F  W  T  C  F  L  D  H  A  L  G  I  S  C  F  I  C  R  H  I  S  G  A  I  K  F  Y  V  E  I  L  N  S  L  Y  L  H  H  L  H  L  E  Y  T  M  S  K  P  N  C  Q  L  L  R  S  S  K  P  D  K  E  A  S  C  K  C  V  R  I  T  I  G  N  L  L  D  I  S  E  V  S  *  L  S  C  C  C  L  *  I  M  V  L  S  S  K  A  V  N  N  F  Y  A  L  G  I  T  C  F  I  C  C  L  C  Y  H  F  I  V  V  L  D  P  F  V  Q  G  M  C  A  F  L  K  R  A  I  F  D  G  V  *  L  Q  L  I  I  M  P  Y  L  R  S  C  C  Y  V  G  R  K  V  G  I  F  A  I  F  C  Y  V  Y  C  A  S  I  L  L  F  T  A  G  L  T  T  R  K  Y  C  Y  L  I  Y  L  I  T  G  S  S  V  E  V  I  C  S  *  M  L  G  C  Y  A  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0079B07.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68306" stop="68692"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>384</number_coding_nucleotides>
                  <number_encoded_amino_acids>128</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKERMCEVLYCCLPAFAMPGALAWQVTKPNKDAIFVFGGEMVRGFLPDSPLCVCLWPPFFSRTVCKIYSDKRLIKFGVNVPERWFRYPQSYSSALPFQWIGMSCTINTTMDRRILGIFSSTLLSKVHL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0079B07.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68295" stop="68606"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SDCREKRGCVRFFIVVCRPLPCRVRSHGRSQNLIKMRFLCSEGRWYGVFCPTLLSVSVFGLLSFLELSARSIQINVSSNLALMSPNDGFDIRKVIAALYLFNG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0079B07.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69438" stop="69749"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGSCCAILLWICSMLKSIIMFYFWTCFLDHALGISCFICRHISGAIKFYVEILNSLYLHHLHLEYTMSKPNCQLLRSSKPDKEASCKCVRITIGNLLDISEVS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="67636" e_stop="67979"/>
            <exon e_start="68073" e_stop="68201"/>
            <exon e_start="68607" e_stop="70138"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.976" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.897" acc_prob="0.104" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="67636" e_stop="67979" e_length="344"/>
          </exon>
          <intron i_serial="1" don_prob="0.976" acc_prob="0.997">
            <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="68073" e_stop="68201" e_length="129"/>
          </exon>
          <intron i_serial="2" don_prob="0.897" acc_prob="0.104">
            <gDNA_intron_boundary i_start="68202" i_stop="68606" i_length="405"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="68607" e_stop="70138" e_length="1532"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67636" stop="67979"/>
              <exon start="68073" stop="68187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67636" stop="67979"/>
              <exon start="68073" stop="68175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316298" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67636" stop="67970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67638" stop="67979"/>
              <exon start="68073" stop="68103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67641" stop="67979"/>
              <exon start="68073" stop="68135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67643" stop="67979"/>
              <exon start="68073" stop="68201"/>
              <exon start="68607" stop="68639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67643" stop="67979"/>
              <exon start="68073" stop="68191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67643" stop="67979"/>
              <exon start="68073" stop="68177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67643" stop="67979"/>
              <exon start="68073" stop="68177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67643" stop="67979"/>
              <exon start="68073" stop="68169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67643" stop="67979"/>
              <exon start="68073" stop="68158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67643" stop="67979"/>
              <exon start="68073" stop="68080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67643" stop="67970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67643" stop="67923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67646" stop="67979"/>
              <exon start="68073" stop="68168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67646" stop="67979"/>
              <exon start="68073" stop="68168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67646" stop="67979"/>
              <exon start="68073" stop="68140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67648" stop="67979"/>
              <exon start="68073" stop="68172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67648" stop="67979"/>
              <exon start="68073" stop="68108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67648" stop="67979"/>
              <exon start="68073" stop="68105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67650" stop="67979"/>
              <exon start="68073" stop="68169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67651" stop="67977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67653" stop="67979"/>
              <exon start="68073" stop="68172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67658" stop="67979"/>
              <exon start="68073" stop="68169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67658" stop="67979"/>
              <exon start="68073" stop="68162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67659" stop="67979"/>
              <exon start="68073" stop="68170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318498" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67661" stop="67979"/>
              <exon start="68073" stop="68177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67666" stop="67979"/>
              <exon start="68073" stop="68169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67684" stop="67979"/>
              <exon start="68073" stop="68111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67689" stop="67937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67690" stop="67976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68617" stop="69219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68642" stop="69163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68646" stop="69001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68650" stop="69482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68653" stop="69282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68669" stop="69247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68670" stop="69231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68670" stop="69166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68677" stop="69392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68677" stop="69285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68677" stop="69173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68697" stop="69268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68756" stop="69250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201567" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68759" stop="69507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68804" stop="69266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68812" stop="69102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68845" stop="69622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68960" stop="69370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68979" stop="69634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69060" stop="69611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316733" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69274" stop="69855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69305" stop="69837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69341" stop="70097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69342" stop="69854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69353" stop="69969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69355" stop="70070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69356" stop="69855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69358" stop="70083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69362" stop="70138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69477" stop="70083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69478" stop="70014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69635" stop="70083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69646" stop="70115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299872" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCATCTTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG : GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATGGTAAACGGCAAGCTTGAGGTTGTTAGATAAG : GTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAATGAGGTTTAGCAGTTTTGACGATCTGAAAATTTGGGTTTGAGATACTGATCTCTCTTTTACTAATCAAATGGTGGGCTATTAAATGAGACTAGATTATTATTTGTTTCATCATCCATATTCTAAATCTTTGTCAAGTCTGTTAAATCAATATCTATCACTAATGCAAAAAGAAATCTGTGTACACGATTGCCATTTATTTATTTATCATCACTGCGAAAATTTCAATATGTAATTTATTATTACATTAAAGGCTGTGGAACTATCTTTGTATTTATTTTCTTGTTATAATTTGCAATGGTGGATTTCAATGGAGTGTTGTTGAGCTCATTCTGTTATCCTAGAGGGTGAATGTTTATTGGGGTATGATTCAGTAAGTTAATTGCTGGATTTTGTACAATTGTTGTTCCTCTGCTGGCCGGTTCTCTGTGCATGCTGACTTGGAAGTTGCTGTGCCATACTGCTATGGATCTGCTCCATGCTGAAATCAATTATTATGTTCTACTTTTGGACTTGTTTCCTTGATCACGCTCTTGGAATTTCCTGTTTTATATGCCGTCATATTTCTGGTGCAATCAAGTTTTATGTGGAAATTCTCAACTCTCTTTACCTGCACCATCTTCACTTGGAATACACAATGAGCAAACCCAATTGTCAGCTTCTTCGTTCTAGCAAGCCTGATAAGGAAGCATCTTGCAAGTGTGTTAGGATAACTATTGGAAACTTGCTTGACATTTCCGAAGTTTCTTGACTAAGTTGCTGCTGTCTGTGAATCATGGTACTCTCATCAAAAGCTGTAAACAATTTCTACGCTCTTGGAATTACCTGTTTTATATGCTGTCTGTGTTACCATTTTATTGTTGTCCTCGATCCATTTGTGCAAGGAATGTGCGCATTTTTGAAGCGGGCTATATTTGATGGAGTGTGATTACAACTTATTATTATGCCTTACTTGAGAAGTTGCTGTTATGTAGGCAGAAAAGTGGGGATATTTGCCATCTTTTGCTATGTATACTGTGCAAGTATACTTCTCTTCACTGCAGGGTTAACCACTAGGAAATATTGTTATCTGATATATTTGATTACTGGATCGTCTGTTGAGGTAATCTGTTCTTAAATGTTAGGTTGTTATGCTTGTTA</gDNA_template>
            <first_frame> F  H  L  L  S  S  S  R  N  I  F  H  L  Q  I  S  L  *  A  F  L  C  F  *  I  G  M  Q  I  R  V  D  R  S  P  I  Y  S  L  S  M  V  S  T  C  I  G  H  H  F  R  A  N  R  N  R  *  C  R  F  I  I  S  E  V  F  R  Y  E  Y  C  S  G  Y  G  R  C  C  W  L  D  E  D  W  I  D  L  M  D  F  V  T  R  L  R  D  A  *  P  F  Q  E  V  L  G  D  L  R  *  F  F  E  F  Y  R :   L  S  S  F  Q  S  G  D  F  T  V  S  L  *  S  L  V  Q  L  D  I  T  G  V  L  F  M  L  D  L  G  D  G  K  R  Q  A  *  G  C  *  I  R :   Y  V  M  H  Y  *  Y  N  N  G  Q  A  N  S  R  N  I  Q  L  H  S  P  I  K  G  T  L  V  N  S  F  N  *  L  *  H  L  T  F  F  H  E  *  I  A  N  S  S  P  *  N  L  *  L  F  L  S  T  G  S  N  F  V  N  I  *  E  F  I  Q  P  T  Y  N  Y  *  L  I  Y  Q  M  K  *  Q  N  D  L  F  *  V  L  E  Q  F  N  S  K  S  N  L  F  H  R  D  I  R  *  S  N  H  L  R  I  M  I  N  *  H  L  *  L  N  I  S  G  V  N  *  F  S  K  *  G  L  A  V  L  T  I  *  K  F  G  F  E  I  L  I  S  L  L  L  I  K  W  W  A  I  K  *  D  *  I  I  I  C  F  I  I  H  I  L  N  L  C  Q  V  C  *  I  N  I  Y  H  *  C  K  K  K  S  V  Y  T  I  A  I  Y  L  F  I  I  T  A  K  I  S  I  C  N  L  L  L  H  *  R  L  W  N  Y  L  C  I  Y  F  L  V  I  I  C  N  G  G  F  Q  W  S  V  V  E  L  I  L  L  S  *  R  V  N  V  Y  W  G  M  I  Q  *  V  N  C  W  I  L  Y  N  C  C  S  S  A  G  R  F  S  V  H  A  D  L  E  V  A  V  P  Y  C  Y  G  S  A  P  C  *  N  Q  L  L  C  S  T  F  G  L  V  S  L  I  T  L  L  E  F  P  V  L  Y  A  V  I  F  L  V  Q  S  S  F  M  W  K  F  S  T  L  F  T  C  T  I  F  T  W  N  T  Q  *  A  N  P  I  V  S  F  F  V  L  A  S  L  I  R  K  H  L  A  S  V  L  G  *  L  L  E  T  C  L  T  F  P  K  F  L  D  *  V  A  A  V  C  E  S  W  Y  S  H  Q  K  L  *  T  I  S  T  L  L  E  L  P  V  L  Y  A  V  C  V  T  I  L  L  L  S  S  I  H  L  C  K  E  C  A  H  F  *  S  G  L  Y  L  M  E  C  D  Y  N  L  L  L  C  L  T  *  E  V  A  V  M  *  A  E  K  W  G  Y  L  P  S  F  A  M  Y  T  V  Q  V  Y  F  S  S  L  Q  G  *  P  L  G  N  I  V  I  *  Y  I  *  L  L  D  R  L  L  R  *  S  V  L  K  C  *  V  V  M  L  V  </first_frame>
            <second_frame>  F  I  F  S  P  L  P  A  I  S  F  I  S  R  S  P  Y  R  H  F  S  A  S  E  S  V  C  R  F  V  *  T  V  R  R  S  T  V  *  V  W  F  R  L  V  S  V  I  I  S  V  Q  I  V  T  D  S  A  D  L  S  F  L  R  Y  F  G  T  N  I  A  R  V  M  D  D  A  V  G  *  T  K  I  G  *  I  *  W  I  L  L  R  D  *  E  M  H  D  L  F  K  K  F  S  V  I  *  D  D  F  L  S  F  I   : G  C  H  R  F  N  L  V  I  L  P  Y  L  C  R  A  W  C  N  W  I  S  L  V  F  Y  L  C  *  I  S  G  M  V  N  G  K  L  E  V  V  R  *   : G  M  S  C  T  I  N  T  T  M  D  R  R  I  L  G  I  F  S  S  T  L  L  S  K  V  H  L  *  I  P  L  T  N  F  D  T  *  L  F  S  M  S  K  L  P  I  V  V  R  K  I  F  N  C  F  *  V  Q  V  V  I  L  L  T  Y  K  S  S  F  S  L  L  I  T  I  D  *  F  I  K  *  N  S  K  M  T  Y  F  E  Y  W  N  S  S  I  L  S  Q  I  C  F  T  E  I  *  D  N  L  T  I  C  E  *  *  *  I  N  I  C  S  L  I  Y  L  E  *  T  S  F  P  N  E  V  *  Q  F  *  R  S  E  N  L  G  L  R  Y  *  S  L  F  Y  *  S  N  G  G  L  L  N  E  T  R  L  L  F  V  S  S  S  I  F  *  I  F  V  K  S  V  K  S  I  S  I  T  N  A  K  R  N  L  C  T  R  L  P  F  I  Y  L  S  S  L  R  K  F  Q  Y  V  I  Y  Y  Y  I  K  G  C  G  T  I  F  V  F  I  F  L  L  *  F  A  M  V  D  F  N  G  V  L  L  S  S  F  C  Y  P  R  G  *  M  F  I  G  V  *  F  S  K  L  I  A  G  F  C  T  I  V  V  P  L  L  A  G  S  L  C  M  L  T  W  K  L  L  C  H  T  A  M  D  L  L  H  A  E  I  N  Y  Y  V  L  L  L  D  L  F  P  *  S  R  S  W  N  F  L  F  Y  M  P  S  Y  F  W  C  N  Q  V  L  C  G  N  S  Q  L  S  L  P  A  P  S  S  L  G  I  H  N  E  Q  T  Q  L  S  A  S  S  F  *  Q  A  *  *  G  S  I  L  Q  V  C  *  D  N  Y  W  K  L  A  *  H  F  R  S  F  L  T  K  L  L  L  S  V  N  H  G  T  L  I  K  S  C  K  Q  F  L  R  S  W  N  Y  L  F  Y  M  L  S  V  L  P  F  Y  C  C  P  R  S  I  C  A  R  N  V  R  I  F  E  A  G  Y  I  *  W  S  V  I  T  T  Y  Y  Y  A  L  L  E  K  L  L  L  C  R  Q  K  S  G  D  I  C  H  L  L  L  C  I  L  C  K  Y  T  S  L  H  C  R  V  N  H  *  E  I  L  L  S  D  I  F  D  Y  W  I  V  C  *  G  N  L  F  L  N  V  R  L  L  C  L  L </second_frame>
            <third_frame>   S  S  S  L  L  F  P  Q  Y  L  S  S  P  D  L  L  I  G  I  S  L  L  L  N  R  Y  A  D  S  C  R  P  F  A  D  L  Q  F  E  Y  G  F  D  L  Y  R  S  S  F  P  C  K  S  *  Q  I  V  P  I  Y  H  F  *  G  I  S  V  R  I  L  L  G  L  W  T  M  L  L  A  R  R  R  L  D  R  S  D  G  F  C  Y  E  I  E  R  C  M  T  F  S  R  S  S  R  *  S  E  M  I  F  *  V  L  S  :  V  V  I  V  S  I  W  *  F  Y  R  I  S  V  E  L  G  A  I  G  Y  H  W  C  S  I  Y  A  R  S  R  G  W  *  T  A  S  L  R  L  L  D  K  :  V  C  H  A  L  L  I  Q  Q  W  T  G  E  F  *  E  Y  S  A  P  L  S  Y  Q  R  Y  T  C  E  F  L  *  L  T  L  T  L  N  F  F  P  *  V  N  C  Q  *  *  S  V  K  S  L  I  V  S  E  Y  R  *  *  F  C  *  H  I  R  V  H  S  A  Y  L  *  L  L  I  N  L  S  N  E  I  A  K  *  L  I  L  S  T  G  T  V  Q  F  *  V  K  S  V  S  Q  R  Y  K  I  I  *  P  F  A  N  N  D  K  L  T  S  V  A  *  Y  I  W  S  E  L  V  F  Q  M  R  F  S  S  F  D  D  L  K  I  W  V  *  D  T  D  L  S  F  T  N  Q  M  V  G  Y  *  M  R  L  D  Y  Y  L  F  H  H  P  Y  S  K  S  L  S  S  L  L  N  Q  Y  L  S  L  M  Q  K  E  I  C  V  H  D  C  H  L  F  I  Y  H  H  C  E  N  F  N  M  *  F  I  I  T  L  K  A  V  E  L  S  L  Y  L  F  S  C  Y  N  L  Q  W  W  I  S  M  E  C  C  *  A  H  S  V  I  L  E  G  E  C  L  L  G  Y  D  S  V  S  *  L  L  D  F  V  Q  L  L  F  L  C  W  P  V  L  C  A  C  *  L  G  S  C  C  A  I  L  L  W  I  C  S  M  L  K  S  I  I  M  F  Y  F  W  T  C  F  L  D  H  A  L  G  I  S  C  F  I  C  R  H  I  S  G  A  I  K  F  Y  V  E  I  L  N  S  L  Y  L  H  H  L  H  L  E  Y  T  M  S  K  P  N  C  Q  L  L  R  S  S  K  P  D  K  E  A  S  C  K  C  V  R  I  T  I  G  N  L  L  D  I  S  E  V  S  *  L  S  C  C  C  L  *  I  M  V  L  S  S  K  A  V  N  N  F  Y  A  L  G  I  T  C  F  I  C  C  L  C  Y  H  F  I  V  V  L  D  P  F  V  Q  G  M  C  A  F  L  K  R  A  I  F  D  G  V  *  L  Q  L  I  I  M  P  Y  L  R  S  C  C  Y  V  G  R  K  V  G  I  F  A  I  F  C  Y  V  Y  C  A  S  I  L  L  F  T  A  G  L  T  T  R  K  Y  C  Y  L  I  Y  L  I  T  G  S  S  V  E  V  I  C  S  *  M  L  G  C  Y  A  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0079B07.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69438" stop="69749"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGSCCAILLWICSMLKSIIMFYFWTCFLDHALGISCFICRHISGAIKFYVEILNSLYLHHLHLEYTMSKPNCQLLRSSKPDKEASCKCVRITIGNLLDISEVS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="67636" e_stop="67979"/>
            <exon e_start="68073" e_stop="68170"/>
            <exon e_start="68514" e_stop="70138"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.976" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.539" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="67636" e_stop="67979" e_length="344"/>
          </exon>
          <intron i_serial="1" don_prob="0.976" acc_prob="0.997">
            <gDNA_intron_boundary i_start="67980" i_stop="68072" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="68073" e_stop="68170" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.539" acc_prob="0.000">
            <gDNA_intron_boundary i_start="68171" i_stop="68513" i_length="343"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="68514" e_stop="70138" e_length="1625"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67636" stop="67970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67638" stop="67979"/>
              <exon start="68073" stop="68103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67641" stop="67979"/>
              <exon start="68073" stop="68135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67643" stop="67979"/>
              <exon start="68073" stop="68169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67643" stop="67979"/>
              <exon start="68073" stop="68158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67643" stop="67979"/>
              <exon start="68073" stop="68080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67643" stop="67970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67643" stop="67923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67646" stop="67979"/>
              <exon start="68073" stop="68168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67646" stop="67979"/>
              <exon start="68073" stop="68168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67646" stop="67979"/>
              <exon start="68073" stop="68140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67648" stop="67979"/>
              <exon start="68073" stop="68108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67648" stop="67979"/>
              <exon start="68073" stop="68105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67650" stop="67979"/>
              <exon start="68073" stop="68169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67651" stop="67977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67658" stop="67979"/>
              <exon start="68073" stop="68169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67658" stop="67979"/>
              <exon start="68073" stop="68162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67659" stop="67979"/>
              <exon start="68073" stop="68170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318498" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67666" stop="67979"/>
              <exon start="68073" stop="68169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67684" stop="67979"/>
              <exon start="68073" stop="68111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67689" stop="67937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67690" stop="67976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67717" stop="67979"/>
              <exon start="68073" stop="68170"/>
              <exon start="68514" stop="68565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68521" stop="68917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68595" stop="69235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68617" stop="69219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68642" stop="69163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68646" stop="69001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68650" stop="69482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68653" stop="69282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68669" stop="69247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68670" stop="69231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68670" stop="69166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68677" stop="69392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68677" stop="69285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68677" stop="69173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68697" stop="69268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68756" stop="69250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201567" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68759" stop="69507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68804" stop="69266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68812" stop="69102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68845" stop="69622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68960" stop="69370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68979" stop="69634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69060" stop="69611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316733" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69274" stop="69855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69305" stop="69837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69341" stop="70097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69342" stop="69854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69353" stop="69969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69355" stop="70070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69356" stop="69855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69358" stop="70083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69362" stop="70138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69477" stop="70083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69478" stop="70014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69635" stop="70083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69646" stop="70115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299872" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCATCTTCTCTCCTCTTCCCGCAATATCTTTCATCTCCAGATCTCCTTATAGGCATTTCTCTGCTTCTGAATCGGTATGCAGATTCGTGTAGACCGTTCGCCGATCTACAGTTTGAGTATGGTTTCGACTTGTATCGGTCATCATTTCCGTGCAAATCGTAACAGATAGTGCCGATTTATCATTTCTGAGGTATTTCGGTACGAATATTGCTCGGGTTATGGACGATGCTGTTGGCTAGACGAAGATTGGATAGATCTGATGGATTTTGTTACGAGATTGAGAGATGCATGACCTTTTCAAGAAGTTCTCGGTGATCTGAGATGATTTTTTGAGTTTTATCG : GTTGTCATCGTTTCAATCTGGTGATTTTACCGTATCTCTGTAGAGCTTGGTGCAATTGGATATCACTGGTGTTCTATTTATGCTAGATCTCGGGGATG : ATAAACGTCTCATCAAATTTGGCGTTAATGTCCCCGAACGATGGTTTCGATATCCGCAAAGTTATAGCAGCGCTCTACCTTTTCAATGGATAGGTATGTCATGCACTATTAATACAACAATGGACAGGCGAATTCTAGGAATATTCAGCTCCACTCTCCTATCAAAGGTACACTTGTGAATTCCTTTAACTAACTTTGACACTTAACTTTTTTCCATGAGTAAATTGCCAATAGTAGTCCGTAAAATCTTTAATTGTTTCTGAGTACAGGTAGTAATTTTGTTAACATATAAGAGTTCATTCAGCCTACTTATAACTATTGATTAATTTATCAAATGAAATAGCAAAATGACTTATTTTGAGTACTGGAACAGTTCAATTCTAAGTCAAATCTGTTTCACAGAGATATAAGATAATCTAACCATTTGCGAATAATGATAAATTAACATCTGTAGCTTAATATATCTGGAGTGAACTAGTTTTCCAAATGAGGTTTAGCAGTTTTGACGATCTGAAAATTTGGGTTTGAGATACTGATCTCTCTTTTACTAATCAAATGGTGGGCTATTAAATGAGACTAGATTATTATTTGTTTCATCATCCATATTCTAAATCTTTGTCAAGTCTGTTAAATCAATATCTATCACTAATGCAAAAAGAAATCTGTGTACACGATTGCCATTTATTTATTTATCATCACTGCGAAAATTTCAATATGTAATTTATTATTACATTAAAGGCTGTGGAACTATCTTTGTATTTATTTTCTTGTTATAATTTGCAATGGTGGATTTCAATGGAGTGTTGTTGAGCTCATTCTGTTATCCTAGAGGGTGAATGTTTATTGGGGTATGATTCAGTAAGTTAATTGCTGGATTTTGTACAATTGTTGTTCCTCTGCTGGCCGGTTCTCTGTGCATGCTGACTTGGAAGTTGCTGTGCCATACTGCTATGGATCTGCTCCATGCTGAAATCAATTATTATGTTCTACTTTTGGACTTGTTTCCTTGATCACGCTCTTGGAATTTCCTGTTTTATATGCCGTCATATTTCTGGTGCAATCAAGTTTTATGTGGAAATTCTCAACTCTCTTTACCTGCACCATCTTCACTTGGAATACACAATGAGCAAACCCAATTGTCAGCTTCTTCGTTCTAGCAAGCCTGATAAGGAAGCATCTTGCAAGTGTGTTAGGATAACTATTGGAAACTTGCTTGACATTTCCGAAGTTTCTTGACTAAGTTGCTGCTGTCTGTGAATCATGGTACTCTCATCAAAAGCTGTAAACAATTTCTACGCTCTTGGAATTACCTGTTTTATATGCTGTCTGTGTTACCATTTTATTGTTGTCCTCGATCCATTTGTGCAAGGAATGTGCGCATTTTTGAAGCGGGCTATATTTGATGGAGTGTGATTACAACTTATTATTATGCCTTACTTGAGAAGTTGCTGTTATGTAGGCAGAAAAGTGGGGATATTTGCCATCTTTTGCTATGTATACTGTGCAAGTATACTTCTCTTCACTGCAGGGTTAACCACTAGGAAATATTGTTATCTGATATATTTGATTACTGGATCGTCTGTTGAGGTAATCTGTTCTTAAATGTTAGGTTGTTATGCTTGTTA</gDNA_template>
            <first_frame> F  H  L  L  S  S  S  R  N  I  F  H  L  Q  I  S  L  *  A  F  L  C  F  *  I  G  M  Q  I  R  V  D  R  S  P  I  Y  S  L  S  M  V  S  T  C  I  G  H  H  F  R  A  N  R  N  R  *  C  R  F  I  I  S  E  V  F  R  Y  E  Y  C  S  G  Y  G  R  C  C  W  L  D  E  D  W  I  D  L  M  D  F  V  T  R  L  R  D  A  *  P  F  Q  E  V  L  G  D  L  R  *  F  F  E  F  Y  R :   L  S  S  F  Q  S  G  D  F  T  V  S  L  *  S  L  V  Q  L  D  I  T  G  V  L  F  M  L  D  L  G  D   : D  K  R  L  I  K  F  G  V  N  V  P  E  R  W  F  R  Y  P  Q  S  Y  S  S  A  L  P  F  Q  W  I  G  M  S  C  T  I  N  T  T  M  D  R  R  I  L  G  I  F  S  S  T  L  L  S  K  V  H  L  *  I  P  L  T  N  F  D  T  *  L  F  S  M  S  K  L  P  I  V  V  R  K  I  F  N  C  F  *  V  Q  V  V  I  L  L  T  Y  K  S  S  F  S  L  L  I  T  I  D  *  F  I  K  *  N  S  K  M  T  Y  F  E  Y  W  N  S  S  I  L  S  Q  I  C  F  T  E  I  *  D  N  L  T  I  C  E  *  *  *  I  N  I  C  S  L  I  Y  L  E  *  T  S  F  P  N  E  V  *  Q  F  *  R  S  E  N  L  G  L  R  Y  *  S  L  F  Y  *  S  N  G  G  L  L  N  E  T  R  L  L  F  V  S  S  S  I  F  *  I  F  V  K  S  V  K  S  I  S  I  T  N  A  K  R  N  L  C  T  R  L  P  F  I  Y  L  S  S  L  R  K  F  Q  Y  V  I  Y  Y  Y  I  K  G  C  G  T  I  F  V  F  I  F  L  L  *  F  A  M  V  D  F  N  G  V  L  L  S  S  F  C  Y  P  R  G  *  M  F  I  G  V  *  F  S  K  L  I  A  G  F  C  T  I  V  V  P  L  L  A  G  S  L  C  M  L  T  W  K  L  L  C  H  T  A  M  D  L  L  H  A  E  I  N  Y  Y  V  L  L  L  D  L  F  P  *  S  R  S  W  N  F  L  F  Y  M  P  S  Y  F  W  C  N  Q  V  L  C  G  N  S  Q  L  S  L  P  A  P  S  S  L  G  I  H  N  E  Q  T  Q  L  S  A  S  S  F  *  Q  A  *  *  G  S  I  L  Q  V  C  *  D  N  Y  W  K  L  A  *  H  F  R  S  F  L  T  K  L  L  L  S  V  N  H  G  T  L  I  K  S  C  K  Q  F  L  R  S  W  N  Y  L  F  Y  M  L  S  V  L  P  F  Y  C  C  P  R  S  I  C  A  R  N  V  R  I  F  E  A  G  Y  I  *  W  S  V  I  T  T  Y  Y  Y  A  L  L  E  K  L  L  L  C  R  Q  K  S  G  D  I  C  H  L  L  L  C  I  L  C  K  Y  T  S  L  H  C  R  V  N  H  *  E  I  L  L  S  D  I  F  D  Y  W  I  V  C  *  G  N  L  F  L  N  V  R  L  L  C  L  L </first_frame>
            <second_frame>  F  I  F  S  P  L  P  A  I  S  F  I  S  R  S  P  Y  R  H  F  S  A  S  E  S  V  C  R  F  V  *  T  V  R  R  S  T  V  *  V  W  F  R  L  V  S  V  I  I  S  V  Q  I  V  T  D  S  A  D  L  S  F  L  R  Y  F  G  T  N  I  A  R  V  M  D  D  A  V  G  *  T  K  I  G  *  I  *  W  I  L  L  R  D  *  E  M  H  D  L  F  K  K  F  S  V  I  *  D  D  F  L  S  F  I   : G  C  H  R  F  N  L  V  I  L  P  Y  L  C  R  A  W  C  N  W  I  S  L  V  F  Y  L  C  *  I  S  G  M  :  I  N  V  S  S  N  L  A  L  M  S  P  N  D  G  F  D  I  R  K  V  I  A  A  L  Y  L  F  N  G  *  V  C  H  A  L  L  I  Q  Q  W  T  G  E  F  *  E  Y  S  A  P  L  S  Y  Q  R  Y  T  C  E  F  L  *  L  T  L  T  L  N  F  F  P  *  V  N  C  Q  *  *  S  V  K  S  L  I  V  S  E  Y  R  *  *  F  C  *  H  I  R  V  H  S  A  Y  L  *  L  L  I  N  L  S  N  E  I  A  K  *  L  I  L  S  T  G  T  V  Q  F  *  V  K  S  V  S  Q  R  Y  K  I  I  *  P  F  A  N  N  D  K  L  T  S  V  A  *  Y  I  W  S  E  L  V  F  Q  M  R  F  S  S  F  D  D  L  K  I  W  V  *  D  T  D  L  S  F  T  N  Q  M  V  G  Y  *  M  R  L  D  Y  Y  L  F  H  H  P  Y  S  K  S  L  S  S  L  L  N  Q  Y  L  S  L  M  Q  K  E  I  C  V  H  D  C  H  L  F  I  Y  H  H  C  E  N  F  N  M  *  F  I  I  T  L  K  A  V  E  L  S  L  Y  L  F  S  C  Y  N  L  Q  W  W  I  S  M  E  C  C  *  A  H  S  V  I  L  E  G  E  C  L  L  G  Y  D  S  V  S  *  L  L  D  F  V  Q  L  L  F  L  C  W  P  V  L  C  A  C  *  L  G  S  C  C  A  I  L  L  W  I  C  S  M  L  K  S  I  I  M  F  Y  F  W  T  C  F  L  D  H  A  L  G  I  S  C  F  I  C  R  H  I  S  G  A  I  K  F  Y  V  E  I  L  N  S  L  Y  L  H  H  L  H  L  E  Y  T  M  S  K  P  N  C  Q  L  L  R  S  S  K  P  D  K  E  A  S  C  K  C  V  R  I  T  I  G  N  L  L  D  I  S  E  V  S  *  L  S  C  C  C  L  *  I  M  V  L  S  S  K  A  V  N  N  F  Y  A  L  G  I  T  C  F  I  C  C  L  C  Y  H  F  I  V  V  L  D  P  F  V  Q  G  M  C  A  F  L  K  R  A  I  F  D  G  V  *  L  Q  L  I  I  M  P  Y  L  R  S  C  C  Y  V  G  R  K  V  G  I  F  A  I  F  C  Y  V  Y  C  A  S  I  L  L  F  T  A  G  L  T  T  R  K  Y  C  Y  L  I  Y  L  I  T  G  S  S  V  E  V  I  C  S  *  M  L  G  C  Y  A  C   </second_frame>
            <third_frame>   S  S  S  L  L  F  P  Q  Y  L  S  S  P  D  L  L  I  G  I  S  L  L  L  N  R  Y  A  D  S  C  R  P  F  A  D  L  Q  F  E  Y  G  F  D  L  Y  R  S  S  F  P  C  K  S  *  Q  I  V  P  I  Y  H  F  *  G  I  S  V  R  I  L  L  G  L  W  T  M  L  L  A  R  R  R  L  D  R  S  D  G  F  C  Y  E  I  E  R  C  M  T  F  S  R  S  S  R  *  S  E  M  I  F  *  V  L  S  :  V  V  I  V  S  I  W  *  F  Y  R  I  S  V  E  L  G  A  I  G  Y  H  W  C  S  I  Y  A  R  S  R  G  * :   *  T  S  H  Q  I  W  R  *  C  P  R  T  M  V  S  I  S  A  K  L  *  Q  R  S  T  F  S  M  D  R  Y  V  M  H  Y  *  Y  N  N  G  Q  A  N  S  R  N  I  Q  L  H  S  P  I  K  G  T  L  V  N  S  F  N  *  L  *  H  L  T  F  F  H  E  *  I  A  N  S  S  P  *  N  L  *  L  F  L  S  T  G  S  N  F  V  N  I  *  E  F  I  Q  P  T  Y  N  Y  *  L  I  Y  Q  M  K  *  Q  N  D  L  F  *  V  L  E  Q  F  N  S  K  S  N  L  F  H  R  D  I  R  *  S  N  H  L  R  I  M  I  N  *  H  L  *  L  N  I  S  G  V  N  *  F  S  K  *  G  L  A  V  L  T  I  *  K  F  G  F  E  I  L  I  S  L  L  L  I  K  W  W  A  I  K  *  D  *  I  I  I  C  F  I  I  H  I  L  N  L  C  Q  V  C  *  I  N  I  Y  H  *  C  K  K  K  S  V  Y  T  I  A  I  Y  L  F  I  I  T  A  K  I  S  I  C  N  L  L  L  H  *  R  L  W  N  Y  L  C  I  Y  F  L  V  I  I  C  N  G  G  F  Q  W  S  V  V  E  L  I  L  L  S  *  R  V  N  V  Y  W  G  M  I  Q  *  V  N  C  W  I  L  Y  N  C  C  S  S  A  G  R  F  S  V  H  A  D  L  E  V  A  V  P  Y  C  Y  G  S  A  P  C  *  N  Q  L  L  C  S  T  F  G  L  V  S  L  I  T  L  L  E  F  P  V  L  Y  A  V  I  F  L  V  Q  S  S  F  M  W  K  F  S  T  L  F  T  C  T  I  F  T  W  N  T  Q  *  A  N  P  I  V  S  F  F  V  L  A  S  L  I  R  K  H  L  A  S  V  L  G  *  L  L  E  T  C  L  T  F  P  K  F  L  D  *  V  A  A  V  C  E  S  W  Y  S  H  Q  K  L  *  T  I  S  T  L  L  E  L  P  V  L  Y  A  V  C  V  T  I  L  L  L  S  S  I  H  L  C  K  E  C  A  H  F  *  S  G  L  Y  L  M  E  C  D  Y  N  L  L  L  C  L  T  *  E  V  A  V  M  *  A  E  K  W  G  Y  L  P  S  F  A  M  Y  T  V  Q  V  Y  F  S  S  L  Q  G  *  P  L  G  N  I  V  I  *  Y  I  *  L  L  D  R  L  L  R  *  S  V  L  K  C  *  V  V  M  L  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0079B07.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69438" stop="69749"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGSCCAILLWICSMLKSIIMFYFWTCFLDHALGISCFICRHISGAIKFYVEILNSLYLHHLHLEYTMSKPNCQLLRSSKPDKEASCKCVRITIGNLLDISEVS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0079B07.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68116" stop="68170"/>
                    <exon start="68514" stop="68692"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLVQLDITGVLFMLDLGDDKRLIKFGVNVPERWFRYPQSYSSALPFQWIGMSCTINTTMDRRILGIFSSTLLSKVHL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="68929" PGL_stop="68594"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68929" e_stop="68594"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="68929" e_stop="68594" e_length="336"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68929" stop="68594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68870" stop="68594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279184" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTATCTTATATCTCTGTGAAACAGATTTGACTTAGAATTGAACTGTTCCAGTACTCAAAATAAGTCATTTTGCTATTTCATTTGATAAATTAATCAATAGTTATAAGTAGGCTGAATGAACTCTTATATGTTAACAAAATTACTACCTGTACTCAGAAACAATTAAAGATTTTACGGACTACTATTGGCAATTTACTCATGGAAAAAAGTTAAGTGTCAAAGTTAGTTAAAGGAATTCACAAGTGTACCTTTGATAGGAGAGTGGAGCTGAATATTCCTAGAATTCGCCTGTCCATTGTTGTATTAATAGTGCATGACATACCTATCCATTGAAA</gDNA_template>
            <first_frame> I  I  L  Y  L  C  E  T  D  L  T  *  N  *  T  V  P  V  L  K  I  S  H  F  A  I  S  F  D  K  L  I  N  S  Y  K  *  A  E  *  T  L  I  C  *  Q  N  Y  Y  L  Y  S  E  T  I  K  D  F  T  D  Y  Y  W  Q  F  T  H  G  K  K  L  S  V  K  V  S  *  R  N  S  Q  V  Y  L  *  *  E  S  G  A  E  Y  S  *  N  S  P  V  H  C  C  I  N  S  A  *  H  T  Y  P  L  K </first_frame>
            <second_frame>  L  S  Y  I  S  V  K  Q  I  *  L  R  I  E  L  F  Q  Y  S  K  *  V  I  L  L  F  H  L  I  N  *  S  I  V  I  S  R  L  N  E  L  L  Y  V  N  K  I  T  T  C  T  Q  K  Q  L  K  I  L  R  T  T  I  G  N  L  L  M  E  K  S  *  V  S  K  L  V  K  G  I  H  K  C  T  F  D  R  R  V  E  L  N  I  P  R  I  R  L  S  I  V  V  L  I  V  H  D  I  P  I  H  *   </second_frame>
            <third_frame>   Y  L  I  S  L  *  N  R  F  D  L  E  L  N  C  S  S  T  Q  N  K  S  F  C  Y  F  I  *  *  I  N  Q  *  L  *  V  G  *  M  N  S  Y  M  L  T  K  L  L  P  V  L  R  N  N  *  R  F  Y  G  L  L  L  A  I  Y  S  W  K  K  V  K  C  Q  S  *  L  K  E  F  T  S  V  P  L  I  G  E  W  S  *  I  F  L  E  F  A  C  P  L  L  Y  *  *  C  M  T  Y  L  S  I  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0079B07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="84885" PGL_stop="88917"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86038" e_stop="86045"/>
            <exon e_start="86215" e_stop="86291"/>
            <exon e_start="86628" e_stop="86807"/>
            <exon e_start="87511" e_stop="87609"/>
            <exon e_start="87710" e_stop="87955"/>
            <exon e_start="88495" e_stop="88917"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.469" acc_prob="0.911" e_score="0.500"/>
          <exon-intron don_prob="0.992" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.464" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.897" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.978" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.500">
            <gDNA_exon_boundary e_start="86038" e_stop="86045" e_length="8"/>
          </exon>
          <intron i_serial="1" don_prob="0.469" acc_prob="0.911">
            <gDNA_intron_boundary i_start="86046" i_stop="86214" i_length="169"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86215" e_stop="86291" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.961">
            <gDNA_intron_boundary i_start="86292" i_stop="86627" i_length="336"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="86628" e_stop="86807" e_length="180"/>
          </exon>
          <intron i_serial="3" don_prob="0.464" acc_prob="0.996">
            <gDNA_intron_boundary i_start="86808" i_stop="87510" i_length="703"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="87511" e_stop="87609" e_length="99"/>
          </exon>
          <intron i_serial="4" don_prob="0.971" acc_prob="0.897">
            <gDNA_intron_boundary i_start="87610" i_stop="87709" i_length="100"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="87710" e_stop="87955" e_length="246"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.978">
            <gDNA_intron_boundary i_start="87956" i_stop="88494" i_length="539"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="88495" e_stop="88917" e_length="423"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86038" stop="86045"/>
              <exon start="86215" stop="86291"/>
              <exon start="86628" stop="86807"/>
              <exon start="87511" stop="87609"/>
              <exon start="87710" stop="87955"/>
              <exon start="88495" stop="88739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86215" stop="86291"/>
              <exon start="86628" stop="86807"/>
              <exon start="87511" stop="87609"/>
              <exon start="87710" stop="87907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86215" stop="86291"/>
              <exon start="86628" stop="86807"/>
              <exon start="87511" stop="87586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86235" stop="86291"/>
              <exon start="86628" stop="86807"/>
              <exon start="87511" stop="87609"/>
              <exon start="87710" stop="87955"/>
              <exon start="88495" stop="88519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86236" stop="86291"/>
              <exon start="86628" stop="86807"/>
              <exon start="87511" stop="87609"/>
              <exon start="87710" stop="87896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87511" stop="87609"/>
              <exon start="87710" stop="87955"/>
              <exon start="88495" stop="88917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87863" stop="87955"/>
              <exon start="88495" stop="88755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353714" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTGTCAA : TTGCAGTAGCATTTATCATGTTTCGTCGCAAGAGCCATCCCCATAGTGAACAGGAGGGTGAGGATCAACCACATAAG : GTTAAGGAACTTAGGACTTCCTTGGGCGCGCCACTATCAGGACGTGATTTACAGTACTGCAGTGATGCATGTTTAAGGAGATATTTGGAAGCGCGGAACTGGAATGTTGAGAAATCAAAGAAGATGTTGGAAGAAACCTTAAAATGGAGGTTAACTTTTAAGCCTGAAGAGATCCGCTGG : CATGAAGTTGCAATTGAAGGTGAGACCGGGAAGGCTTACAGAGCAAATTTTCATGACCGTGATGGGAGGACTGTTCTTATCTTGAGACCGGGAATGCAG : AACACGACAGCACTAGACAACCAGATGAGGCATTTAGTGTATCTGATAGAAAATGCAATTCTTAATCTTCCACAAGACCAAGAGCAAATGTCATGGTTGATAGACTTCACAGGATGGTCTTTAACTAACAATGTTCCTATCAAATCTGCTCGTGAGACGGTCAATATTTTGCAGAATCACTACCCTGAAAGACTTGCTGTAGCATTTCTGTACAACCCTCCGCGGATTTTTGAAGCATTTTGGAAG : ATAGTCAAGTATTTTCTGGATCCCAAAACAATGCAGAAGGTCAAATTTGTTTATCCAAAGAACAAGGACAGTGTTGAGTTGATGAAGTCATATTTTGACATGGATAATTTACCAAATGAATTAGGAGGAAAAGCAAATTTGAAATATGATCATGAAGAGTTCTCAAGGCAAATGACTCAAGATGATGTGAAAGCTGCAAAGTTTTGGAGTTTTGACATACACCACACTGAAACTAATGGCTATTCTGCAGCTGAGGTTGCTCCAAAGACTGAGTGTCTTGCTCCACCAGTTAAAGTTTAGATGCTTTTGCTAGAGTTACTTAAAACTTTGTTAGATGCTTTGTTATGATATAACAAATGTAAGATGTTAAGAATTTGCATTTTAAATACTAGGCAATAAACACTAGGTGATTACTTTTCGTCT</gDNA_template>
            <first_frame> T  V  N :   C  S  S  I  Y  H  V  S  S  Q  E  P  S  P  *  *  T  G  G  *  G  S  T  T  *   : G  *  G  T  *  D  F  L  G  R  A  T  I  R  T  *  F  T  V  L  Q  *  C  M  F  K  E  I  F  G  S  A  E  L  E  C  *  E  I  K  E  D  V  G  R  N  L  K  M  E  V  N  F  *  A  *  R  D  P  L   : A  *  S  C  N  *  R  *  D  R  E  G  L  Q  S  K  F  S  *  P  *  W  E  D  C  S  Y  L  E  T  G  N  A   : E  H  D  S  T  R  Q  P  D  E  A  F  S  V  S  D  R  K  C  N  S  *  S  S  T  R  P  R  A  N  V  M  V  D  R  L  H  R  M  V  F  N  *  Q  C  S  Y  Q  I  C  S  *  D  G  Q  Y  F  A  E  S  L  P  *  K  T  C  C  S  I  S  V  Q  P  S  A  D  F  *  S  I  L  E   : D  S  Q  V  F  S  G  S  Q  N  N  A  E  G  Q  I  C  L  S  K  E  Q  G  Q  C  *  V  D  E  V  I  F  *  H  G  *  F  T  K  *  I  R  R  K  S  K  F  E  I  *  S  *  R  V  L  K  A  N  D  S  R  *  C  E  S  C  K  V  L  E  F  *  H  T  P  H  *  N  *  W  L  F  C  S  *  G  C  S  K  D  *  V  S  C  S  T  S  *  S  L  D  A  F  A  R  V  T  *  N  F  V  R  C  F  V  M  I  *  Q  M  *  D  V  K  N  L  H  F  K  Y  *  A  I  N  T  R  *  L  L  F  V  </first_frame>
            <second_frame>  L  S   : I  A  V  A  F  I  M  F  R  R  K  S  H  P  H  S  E  Q  E  G  E  D  Q  P  H  K  :  V  K  E  L  R  T  S  L  G  A  P  L  S  G  R  D  L  Q  Y  C  S  D  A  C  L  R  R  Y  L  E  A  R  N  W  N  V  E  K  S  K  K  M  L  E  E  T  L  K  W  R  L  T  F  K  P  E  E  I  R  W  :  H  E  V  A  I  E  G  E  T  G  K  A  Y  R  A  N  F  H  D  R  D  G  R  T  V  L  I  L  R  P  G  M  Q  :  N  T  T  A  L  D  N  Q  M  R  H  L  V  Y  L  I  E  N  A  I  L  N  L  P  Q  D  Q  E  Q  M  S  W  L  I  D  F  T  G  W  S  L  T  N  N  V  P  I  K  S  A  R  E  T  V  N  I  L  Q  N  H  Y  P  E  R  L  A  V  A  F  L  Y  N  P  P  R  I  F  E  A  F  W  K  :  I  V  K  Y  F  L  D  P  K  T  M  Q  K  V  K  F  V  Y  P  K  N  K  D  S  V  E  L  M  K  S  Y  F  D  M  D  N  L  P  N  E  L  G  G  K  A  N  L  K  Y  D  H  E  E  F  S  R  Q  M  T  Q  D  D  V  K  A  A  K  F  W  S  F  D  I  H  H  T  E  T  N  G  Y  S  A  A  E  V  A  P  K  T  E  C  L  A  P  P  V  K  V  *  M  L  L  L  E  L  L  K  T  L  L  D  A  L  L  *  Y  N  K  C  K  M  L  R  I  C  I  L  N  T  R  Q  *  T  L  G  D  Y  F  S  S </second_frame>
            <third_frame>   C  Q  :  L  Q  *  H  L  S  C  F  V  A  R  A  I  P  I  V  N  R  R  V  R  I  N  H  I  R :   L  R  N  L  G  L  P  W  A  R  H  Y  Q  D  V  I  Y  S  T  A  V  M  H  V  *  G  D  I  W  K  R  G  T  G  M  L  R  N  Q  R  R  C  W  K  K  P  *  N  G  G  *  L  L  S  L  K  R  S  A  G :   M  K  L  Q  L  K  V  R  P  G  R  L  T  E  Q  I  F  M  T  V  M  G  G  L  F  L  S  *  D  R  E  C  R :   T  R  Q  H  *  T  T  R  *  G  I  *  C  I  *  *  K  M  Q  F  L  I  F  H  K  T  K  S  K  C  H  G  *  *  T  S  Q  D  G  L  *  L  T  M  F  L  S  N  L  L  V  R  R  S  I  F  C  R  I  T  T  L  K  D  L  L  *  H  F  C  T  T  L  R  G  F  L  K  H  F  G  R :   *  S  S  I  F  W  I  P  K  Q  C  R  R  S  N  L  F  I  Q  R  T  R  T  V  L  S  *  *  S  H  I  L  T  W  I  I  Y  Q  M  N  *  E  E  K  Q  I  *  N  M  I  M  K  S  S  Q  G  K  *  L  K  M  M  *  K  L  Q  S  F  G  V  L  T  Y  T  T  L  K  L  M  A  I  L  Q  L  R  L  L  Q  R  L  S  V  L  L  H  Q  L  K  F  R  C  F  C  *  S  Y  L  K  L  C  *  M  L  C  Y  D  I  T  N  V  R  C  *  E  F  A  F  *  I  L  G  N  K  H  *  V  I  T  F  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0079B07.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86039" stop="86045"/>
                    <exon start="86215" stop="86291"/>
                    <exon start="86628" stop="86807"/>
                    <exon start="87511" stop="87609"/>
                    <exon start="87710" stop="87955"/>
                    <exon start="88495" stop="88794"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>906</number_coding_nucleotides>
                  <number_encoded_amino_acids>302</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSIAVAFIMFRRKSHPHSEQEGEDQPHKVKELRTSLGAPLSGRDLQYCSDACLRRYLEARNWNVEKSKKMLEETLKWRLTFKPEEIRWHEVAIEGETGKAYRANFHDRDGRTVLILRPGMQNTTALDNQMRHLVYLIENAILNLPQDQEQMSWLIDFTGWSLTNNVPIKSARETVNILQNHYPERLAVAFLYNPPRIFEAFWKIVKYFLDPKTMQKVKFVYPKNKDSVELMKSYFDMDNLPNELGGKANLKYDHEEFSRQMTQDDVKAAKFWSFDIHHTETNGYSAAEVAPKTECLAPPVKV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="84885" e_stop="84903"/>
            <exon e_start="86215" e_stop="86291"/>
            <exon e_start="86628" e_stop="86807"/>
            <exon e_start="87511" e_stop="87609"/>
            <exon e_start="87710" e_stop="87955"/>
            <exon e_start="88495" e_stop="88917"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.911" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.464" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.897" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.978" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="84885" e_stop="84903" e_length="19"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.911">
            <gDNA_intron_boundary i_start="84904" i_stop="86214" i_length="1311"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86215" e_stop="86291" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.961">
            <gDNA_intron_boundary i_start="86292" i_stop="86627" i_length="336"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="86628" e_stop="86807" e_length="180"/>
          </exon>
          <intron i_serial="3" don_prob="0.464" acc_prob="0.996">
            <gDNA_intron_boundary i_start="86808" i_stop="87510" i_length="703"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="87511" e_stop="87609" e_length="99"/>
          </exon>
          <intron i_serial="4" don_prob="0.971" acc_prob="0.897">
            <gDNA_intron_boundary i_start="87610" i_stop="87709" i_length="100"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="87710" e_stop="87955" e_length="246"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.978">
            <gDNA_intron_boundary i_start="87956" i_stop="88494" i_length="539"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="88495" e_stop="88917" e_length="423"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84885" stop="84903"/>
              <exon start="86215" stop="86291"/>
              <exon start="86628" stop="86807"/>
              <exon start="87511" stop="87609"/>
              <exon start="87710" stop="87955"/>
              <exon start="88495" stop="88713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86215" stop="86291"/>
              <exon start="86628" stop="86807"/>
              <exon start="87511" stop="87609"/>
              <exon start="87710" stop="87907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86215" stop="86291"/>
              <exon start="86628" stop="86807"/>
              <exon start="87511" stop="87586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86235" stop="86291"/>
              <exon start="86628" stop="86807"/>
              <exon start="87511" stop="87609"/>
              <exon start="87710" stop="87955"/>
              <exon start="88495" stop="88519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86236" stop="86291"/>
              <exon start="86628" stop="86807"/>
              <exon start="87511" stop="87609"/>
              <exon start="87710" stop="87896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87511" stop="87609"/>
              <exon start="87710" stop="87955"/>
              <exon start="88495" stop="88917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87863" stop="87955"/>
              <exon start="88495" stop="88755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353714" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCAAATTTCTAACCTAAG : TTGCAGTAGCATTTATCATGTTTCGTCGCAAGAGCCATCCCCATAGTGAACAGGAGGGTGAGGATCAACCACATAAG : GTTAAGGAACTTAGGACTTCCTTGGGCGCGCCACTATCAGGACGTGATTTACAGTACTGCAGTGATGCATGTTTAAGGAGATATTTGGAAGCGCGGAACTGGAATGTTGAGAAATCAAAGAAGATGTTGGAAGAAACCTTAAAATGGAGGTTAACTTTTAAGCCTGAAGAGATCCGCTGG : CATGAAGTTGCAATTGAAGGTGAGACCGGGAAGGCTTACAGAGCAAATTTTCATGACCGTGATGGGAGGACTGTTCTTATCTTGAGACCGGGAATGCAG : AACACGACAGCACTAGACAACCAGATGAGGCATTTAGTGTATCTGATAGAAAATGCAATTCTTAATCTTCCACAAGACCAAGAGCAAATGTCATGGTTGATAGACTTCACAGGATGGTCTTTAACTAACAATGTTCCTATCAAATCTGCTCGTGAGACGGTCAATATTTTGCAGAATCACTACCCTGAAAGACTTGCTGTAGCATTTCTGTACAACCCTCCGCGGATTTTTGAAGCATTTTGGAAG : ATAGTCAAGTATTTTCTGGATCCCAAAACAATGCAGAAGGTCAAATTTGTTTATCCAAAGAACAAGGACAGTGTTGAGTTGATGAAGTCATATTTTGACATGGATAATTTACCAAATGAATTAGGAGGAAAAGCAAATTTGAAATATGATCATGAAGAGTTCTCAAGGCAAATGACTCAAGATGATGTGAAAGCTGCAAAGTTTTGGAGTTTTGACATACACCACACTGAAACTAATGGCTATTCTGCAGCTGAGGTTGCTCCAAAGACTGAGTGTCTTGCTCCACCAGTTAAAGTTTAGATGCTTTTGCTAGAGTTACTTAAAACTTTGTTAGATGCTTTGTTATGATATAACAAATGTAAGATGTTAAGAATTTGCATTTTAAATACTAGGCAATAAACACTAGGTGATTACTTTTCGTCT</gDNA_template>
            <first_frame> L  K  F  L  T  *   : V  A  V  A  F  I  M  F  R  R  K  S  H  P  H  S  E  Q  E  G  E  D  Q  P  H  K  :  V  K  E  L  R  T  S  L  G  A  P  L  S  G  R  D  L  Q  Y  C  S  D  A  C  L  R  R  Y  L  E  A  R  N  W  N  V  E  K  S  K  K  M  L  E  E  T  L  K  W  R  L  T  F  K  P  E  E  I  R  W  :  H  E  V  A  I  E  G  E  T  G  K  A  Y  R  A  N  F  H  D  R  D  G  R  T  V  L  I  L  R  P  G  M  Q  :  N  T  T  A  L  D  N  Q  M  R  H  L  V  Y  L  I  E  N  A  I  L  N  L  P  Q  D  Q  E  Q  M  S  W  L  I  D  F  T  G  W  S  L  T  N  N  V  P  I  K  S  A  R  E  T  V  N  I  L  Q  N  H  Y  P  E  R  L  A  V  A  F  L  Y  N  P  P  R  I  F  E  A  F  W  K  :  I  V  K  Y  F  L  D  P  K  T  M  Q  K  V  K  F  V  Y  P  K  N  K  D  S  V  E  L  M  K  S  Y  F  D  M  D  N  L  P  N  E  L  G  G  K  A  N  L  K  Y  D  H  E  E  F  S  R  Q  M  T  Q  D  D  V  K  A  A  K  F  W  S  F  D  I  H  H  T  E  T  N  G  Y  S  A  A  E  V  A  P  K  T  E  C  L  A  P  P  V  K  V  *  M  L  L  L  E  L  L  K  T  L  L  D  A  L  L  *  Y  N  K  C  K  M  L  R  I  C  I  L  N  T  R  Q  *  T  L  G  D  Y  F  S  S </first_frame>
            <second_frame>  S  N  F  *  P  K  :  L  Q  *  H  L  S  C  F  V  A  R  A  I  P  I  V  N  R  R  V  R  I  N  H  I  R :   L  R  N  L  G  L  P  W  A  R  H  Y  Q  D  V  I  Y  S  T  A  V  M  H  V  *  G  D  I  W  K  R  G  T  G  M  L  R  N  Q  R  R  C  W  K  K  P  *  N  G  G  *  L  L  S  L  K  R  S  A  G :   M  K  L  Q  L  K  V  R  P  G  R  L  T  E  Q  I  F  M  T  V  M  G  G  L  F  L  S  *  D  R  E  C  R :   T  R  Q  H  *  T  T  R  *  G  I  *  C  I  *  *  K  M  Q  F  L  I  F  H  K  T  K  S  K  C  H  G  *  *  T  S  Q  D  G  L  *  L  T  M  F  L  S  N  L  L  V  R  R  S  I  F  C  R  I  T  T  L  K  D  L  L  *  H  F  C  T  T  L  R  G  F  L  K  H  F  G  R :   *  S  S  I  F  W  I  P  K  Q  C  R  R  S  N  L  F  I  Q  R  T  R  T  V  L  S  *  *  S  H  I  L  T  W  I  I  Y  Q  M  N  *  E  E  K  Q  I  *  N  M  I  M  K  S  S  Q  G  K  *  L  K  M  M  *  K  L  Q  S  F  G  V  L  T  Y  T  T  L  K  L  M  A  I  L  Q  L  R  L  L  Q  R  L  S  V  L  L  H  Q  L  K  F  R  C  F  C  *  S  Y  L  K  L  C  *  M  L  C  Y  D  I  T  N  V  R  C  *  E  F  A  F  *  I  L  G  N  K  H  *  V  I  T  F  R   </second_frame>
            <third_frame>   Q  I  S  N  L  S :   C  S  S  I  Y  H  V  S  S  Q  E  P  S  P  *  *  T  G  G  *  G  S  T  T  *   : G  *  G  T  *  D  F  L  G  R  A  T  I  R  T  *  F  T  V  L  Q  *  C  M  F  K  E  I  F  G  S  A  E  L  E  C  *  E  I  K  E  D  V  G  R  N  L  K  M  E  V  N  F  *  A  *  R  D  P  L   : A  *  S  C  N  *  R  *  D  R  E  G  L  Q  S  K  F  S  *  P  *  W  E  D  C  S  Y  L  E  T  G  N  A   : E  H  D  S  T  R  Q  P  D  E  A  F  S  V  S  D  R  K  C  N  S  *  S  S  T  R  P  R  A  N  V  M  V  D  R  L  H  R  M  V  F  N  *  Q  C  S  Y  Q  I  C  S  *  D  G  Q  Y  F  A  E  S  L  P  *  K  T  C  C  S  I  S  V  Q  P  S  A  D  F  *  S  I  L  E   : D  S  Q  V  F  S  G  S  Q  N  N  A  E  G  Q  I  C  L  S  K  E  Q  G  Q  C  *  V  D  E  V  I  F  *  H  G  *  F  T  K  *  I  R  R  K  S  K  F  E  I  *  S  *  R  V  L  K  A  N  D  S  R  *  C  E  S  C  K  V  L  E  F  *  H  T  P  H  *  N  *  W  L  F  C  S  *  G  C  S  K  D  *  V  S  C  S  T  S  *  S  L  D  A  F  A  R  V  T  *  N  F  V  R  C  F  V  M  I  *  Q  M  *  D  V  K  N  L  H  F  K  Y  *  A  I  N  T  R  *  L  L  F  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0079B07.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84903" stop="86291"/>
                    <exon start="86628" stop="86807"/>
                    <exon start="87511" stop="87609"/>
                    <exon start="87710" stop="87955"/>
                    <exon start="88495" stop="88794"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>900</number_coding_nucleotides>
                  <number_encoded_amino_acids>300</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VAVAFIMFRRKSHPHSEQEGEDQPHKVKELRTSLGAPLSGRDLQYCSDACLRRYLEARNWNVEKSKKMLEETLKWRLTFKPEEIRWHEVAIEGETGKAYRANFHDRDGRTVLILRPGMQNTTALDNQMRHLVYLIENAILNLPQDQEQMSWLIDFTGWSLTNNVPIKSARETVNILQNHYPERLAVAFLYNPPRIFEAFWKIVKYFLDPKTMQKVKFVYPKNKDSVELMKSYFDMDNLPNELGGKANLKYDHEEFSRQMTQDDVKAAKFWSFDIHHTETNGYSAAEVAPKTECLAPPVKV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="94173" PGL_stop="89555"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92756" e_stop="91900"/>
            <exon e_start="90039" e_stop="89555"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="0.984"/>
          <exon-only e_score="0.942"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="92756" e_stop="91900" e_length="857"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="91899" i_stop="90040" i_length="1860"/>
          </intron>
          <exon e_serial="2" e_score="0.942">
            <gDNA_exon_boundary e_start="90039" e_stop="89555" e_length="485"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92756" stop="92495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92753" stop="92125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92711" stop="92344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92701" stop="91993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92700" stop="92317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92643" stop="92359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92440" stop="91900"/>
              <exon start="90039" stop="89961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92174" stop="91900"/>
              <exon start="90039" stop="89555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431587" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89847" stop="89555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464628" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTTCTCTCCATGTTTTGCCAGTATGATTCTCTGATCAGAGATGTTTGATAATGGAACAGGGTTCTTTGGCCTACGTAGGTCCCGATTCATGGTTCGATTATGTCCTTATCGGTGTCTGGTGAAGGATTCTGTTGAGGATTAAACATGGAGAATGGTCATGAATTACTCAGCAATGGAAAACCAGCTGATCCTGGTCTCCAAATTATTAGGCACCCCTCTTACCAATCATCTTGTGGTAAATTATTGTTATCCTGGTTAGATATAAGAGTTTTCTATATTAGAGTCAGCAATTTTATGGTAGATGATTCCACCCCGGAATATCTTACTCTCAACCACATTCCTCTAAGTCCCGATACATTGCTTGAAGTTAATGGAACAAGATGTTCCATGTATTCAGAAGGAGCATCTTGTCTCCTTCGAAGGGATAGGGTTGATAAGAAATCCGAAGAAGCTACATTTGTGAGCACGGATAGTATAAGGTTGACAGGAAGTGTGAAATTTGAGGTTTTCAATAAAGATGATCTTGTGCTCTCGGGTTTTTTAGAGATGTCGAATAGTAATGGTTTTGTTGGGGAGTCTAAAAACAGTGGCAAGAGATGGAACATGAATTGTGAATCGGTGATGAATGCTGGCACTGGTTTCCTGAAGGGTAAACAAATTATGGATTCTGAATCATTTTCACCAACAATTGAAGTCTTTATTACTGGTTGCTTCTCCGGGACACCTATCATCTTGACCAAGAGTTTGCAGCTCAATCATCGGAAGAAGCACAACAGGAAGGGTATGTTGCACTCAATCCCGGAGCATGAAACAGATGAGCAGCAGAAAGATGTCTCATCTGAACTTGATCTGCAG : GTTACAGAGTATAGAAAGTATGAACTAGAAAGCGAAGAAGACTACAACATGTATTGGAGACAAACGGAATATATGGATGGTGAAGATGGGGAACTGTCCTGGTTCAATGCTGGGGTCCGTGTTGGTGTAGGGATCGGTCTTGGCATTTGCGTAGGAGTTGGAATAGGAGTTGGCCTGTTAGTCCGCACCTACCAGACTACTACGAGGAACTTCAGAAGGCTTGTGTGATTATGTAGCGTTTGCTGCATTTGTTTTTGCATAGACCAAACGGCTAACAACAGATATATGTTTGTCTTGAGAGTGTGAATTCTGCTCATTAGACAGTTTCAGTGTAGCTAACCATCATACATTTTCGTGTTAACTTACTTCCTGCTAGCTTTTCGTCTTCCCATGCCCCATCCCCGTGTTAAGTTAAGTCTCTTTGTACCTCCTTGTTTTGGATTTAGGTGTGCAAACTCTTACTGTTGTAGATGTTCCATTCTGTT</gDNA_template>
            <first_frame> L  F  S  P  C  F  A  S  M  I  L  *  S  E  M  F  D  N  G  T  G  F  F  G  L  R  R  S  R  F  M  V  R  L  C  P  Y  R  C  L  V  K  D  S  V  E  D  *  T  W  R  M  V  M  N  Y  S  A  M  E  N  Q  L  I  L  V  S  K  L  L  G  T  P  L  T  N  H  L  V  V  N  Y  C  Y  P  G  *  I  *  E  F  S  I  L  E  S  A  I  L  W  *  M  I  P  P  R  N  I  L  L  S  T  T  F  L  *  V  P  I  H  C  L  K  L  M  E  Q  D  V  P  C  I  Q  K  E  H  L  V  S  F  E  G  I  G  L  I  R  N  P  K  K  L  H  L  *  A  R  I  V  *  G  *  Q  E  V  *  N  L  R  F  S  I  K  M  I  L  C  S  R  V  F  *  R  C  R  I  V  M  V  L  L  G  S  L  K  T  V  A  R  D  G  T  *  I  V  N  R  *  *  M  L  A  L  V  S  *  R  V  N  K  L  W  I  L  N  H  F  H  Q  Q  L  K  S  L  L  L  V  A  S  P  G  H  L  S  S  *  P  R  V  C  S  S  I  I  G  R  S  T  T  G  R  V  C  C  T  Q  S  R  S  M  K  Q  M  S  S  R  K  M  S  H  L  N  L  I  C  R :   L  Q  S  I  E  S  M  N  *  K  A  K  K  T  T  T  C  I  G  D  K  R  N  I  W  M  V  K  M  G  N  C  P  G  S  M  L  G  S  V  L  V  *  G  S  V  L  A  F  A  *  E  L  E  *  E  L  A  C  *  S  A  P  T  R  L  L  R  G  T  S  E  G  L  C  D  Y  V  A  F  A  A  F  V  F  A  *  T  K  R  L  T  T  D  I  C  L  S  *  E  C  E  F  C  S  L  D  S  F  S  V  A  N  H  H  T  F  S  C  *  L  T  S  C  *  L  F  V  F  P  C  P  I  P  V  L  S  *  V  S  L  Y  L  L  V  L  D  L  G  V  Q  T  L  T  V  V  D  V  P  F  C  </first_frame>
            <second_frame>  C  S  L  H  V  L  P  V  *  F  S  D  Q  R  C  L  I  M  E  Q  G  S  L  A  Y  V  G  P  D  S  W  F  D  Y  V  L  I  G  V  W  *  R  I  L  L  R  I  K  H  G  E  W  S  *  I  T  Q  Q  W  K  T  S  *  S  W  S  P  N  Y  *  A  P  L  L  P  I  I  L  W  *  I  I  V  I  L  V  R  Y  K  S  F  L  Y  *  S  Q  Q  F  Y  G  R  *  F  H  P  G  I  S  Y  S  Q  P  H  S  S  K  S  R  Y  I  A  *  S  *  W  N  K  M  F  H  V  F  R  R  S  I  L  S  P  S  K  G  *  G  *  *  E  I  R  R  S  Y  I  C  E  H  G  *  Y  K  V  D  R  K  C  E  I  *  G  F  Q  *  R  *  S  C  A  L  G  F  F  R  D  V  E  *  *  W  F  C  W  G  V  *  K  Q  W  Q  E  M  E  H  E  L  *  I  G  D  E  C  W  H  W  F  P  E  G  *  T  N  Y  G  F  *  I  I  F  T  N  N  *  S  L  Y  Y  W  L  L  L  R  D  T  Y  H  L  D  Q  E  F  A  A  Q  S  S  E  E  A  Q  Q  E  G  Y  V  A  L  N  P  G  A  *  N  R  *  A  A  E  R  C  L  I  *  T  *  S  A   : G  Y  R  V  *  K  V  *  T  R  K  R  R  R  L  Q  H  V  L  E  T  N  G  I  Y  G  W  *  R  W  G  T  V  L  V  Q  C  W  G  P  C  W  C  R  D  R  S  W  H  L  R  R  S  W  N  R  S  W  P  V  S  P  H  L  P  D  Y  Y  E  E  L  Q  K  A  C  V  I  M  *  R  L  L  H  L  F  L  H  R  P  N  G  *  Q  Q  I  Y  V  C  L  E  S  V  N  S  A  H  *  T  V  S  V  *  L  T  I  I  H  F  R  V  N  L  L  P  A  S  F  S  S  S  H  A  P  S  P  C  *  V  K  S  L  C  T  S  L  F  W  I  *  V  C  K  L  L  L  L  *  M  F  H  S  V </second_frame>
            <third_frame>   V  L  S  M  F  C  Q  Y  D  S  L  I  R  D  V  *  *  W  N  R  V  L  W  P  T  *  V  P  I  H  G  S  I  M  S  L  S  V  S  G  E  G  F  C  *  G  L  N  M  E  N  G  H  E  L  L  S  N  G  K  P  A  D  P  G  L  Q  I  I  R  H  P  S  Y  Q  S  S  C  G  K  L  L  L  S  W  L  D  I  R  V  F  Y  I  R  V  S  N  F  M  V  D  D  S  T  P  E  Y  L  T  L  N  H  I  P  L  S  P  D  T  L  L  E  V  N  G  T  R  C  S  M  Y  S  E  G  A  S  C  L  L  R  R  D  R  V  D  K  K  S  E  E  A  T  F  V  S  T  D  S  I  R  L  T  G  S  V  K  F  E  V  F  N  K  D  D  L  V  L  S  G  F  L  E  M  S  N  S  N  G  F  V  G  E  S  K  N  S  G  K  R  W  N  M  N  C  E  S  V  M  N  A  G  T  G  F  L  K  G  K  Q  I  M  D  S  E  S  F  S  P  T  I  E  V  F  I  T  G  C  F  S  G  T  P  I  I  L  T  K  S  L  Q  L  N  H  R  K  K  H  N  R  K  G  M  L  H  S  I  P  E  H  E  T  D  E  Q  Q  K  D  V  S  S  E  L  D  L  Q  :  V  T  E  Y  R  K  Y  E  L  E  S  E  E  D  Y  N  M  Y  W  R  Q  T  E  Y  M  D  G  E  D  G  E  L  S  W  F  N  A  G  V  R  V  G  V  G  I  G  L  G  I  C  V  G  V  G  I  G  V  G  L  L  V  R  T  Y  Q  T  T  T  R  N  F  R  R  L  V  *  L  C  S  V  C  C  I  C  F  C  I  D  Q  T  A  N  N  R  Y  M  F  V  L  R  V  *  I  L  L  I  R  Q  F  Q  C  S  *  P  S  Y  I  F  V  L  T  Y  F  L  L  A  F  R  L  P  M  P  H  P  R  V  K  L  S  L  F  V  P  P  C  F  G  F  R  C  A  N  S  Y  C  C  R  C  S  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0079B07.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92619" stop="91900"/>
                    <exon start="90039" stop="89812"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>945</number_coding_nucleotides>
                  <number_encoded_amino_acids>315</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLNMENGHELLSNGKPADPGLQIIRHPSYQSSCGKLLLSWLDIRVFYIRVSNFMVDDSTPEYLTLNHIPLSPDTLLEVNGTRCSMYSEGASCLLRRDRVDKKSEEATFVSTDSIRLTGSVKFEVFNKDDLVLSGFLEMSNSNGFVGESKNSGKRWNMNCESVMNAGTGFLKGKQIMDSESFSPTIEVFITGCFSGTPIILTKSLQLNHRKKHNRKGMLHSIPEHETDEQQKDVSSELDLQVTEYRKYELESEEDYNMYWRQTEYMDGEDGELSWFNAGVRVGVGIGLGICVGVGIGVGLLVRTYQTTTRNFRRLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="94173" e_stop="93974"/>
            <exon e_start="92695" e_stop="91900"/>
            <exon e_start="90039" e_stop="89555"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.816" acc_prob="0.857" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="0.974"/>
          <exon-only e_score="0.942"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="94173" e_stop="93974" e_length="200"/>
          </exon>
          <intron i_serial="1" don_prob="0.816" acc_prob="0.857">
            <gDNA_intron_boundary i_start="93973" i_stop="92696" i_length="1278"/>
          </intron>
          <exon e_serial="2" e_score="0.974">
            <gDNA_exon_boundary e_start="92695" e_stop="91900" e_length="796"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="91899" i_stop="90040" i_length="1860"/>
          </intron>
          <exon e_serial="3" e_score="0.942">
            <gDNA_exon_boundary e_start="90039" e_stop="89555" e_length="485"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94173" stop="93974"/>
              <exon start="92695" stop="92127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94108" stop="93974"/>
              <exon start="92695" stop="92589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94084" stop="93974"/>
              <exon start="92695" stop="92324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94038" stop="93974"/>
              <exon start="92695" stop="92253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93998" stop="93974"/>
              <exon start="92695" stop="91952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92643" stop="92359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92440" stop="91900"/>
              <exon start="90039" stop="89961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92174" stop="91900"/>
              <exon start="90039" stop="89555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431587" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89847" stop="89555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464628" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAAAGGCATATTTTGATGGTAAAATTGAAGAAGATTCCAAAAAGAGTAGCATCACTGTATATTGATTATATTTTAGCTAACCAAACAGTTTGGTGGAAGTTGATGAGAAAAAACACTTCTTTTTTGGGAAGTCGAAAGTGATTTAAAAGATCTTTGGATGCTTGTATAGAAGTAGAAAAAATAGAGAGGATTTTCTTG : GGTTCTTTGGCCTACGTAGGTCCCGATTCATGGTTCGATTATGTCCTTATCGGTGTCTGGTGAAGGATTCTGTTGAGGATTAAACATGGAGAATGGTCATGAATTACTCAGCAATGGAAAACCAGCTGATCCTGGTCTCCAAATTATTAGGCACCCCTCTTACCAATCATCTTGTGGTAAATTATTGTTATCCTGGTTAGATATAAGAGTTTTCTATATTAGAGTCAGCAATTTTATGGTAGATGATTCCACCCCGGAATATCTTACTCTCAACCACATTCCTCTAAGTCCCGATACATTGCTTGAAGTTAATGGAACAAGATGTTCCATGTATTCAGAAGGAGCATCTTGTCTCCTTCGAAGGGATAGGGTTGATAAGAAATCCGAAGAAGCTACATTTGTGAGCACGGATAGTATAAGGTTGACAGGAAGTGTGAAATTTGAGGTTTTCAATAAAGATGATCTTGTGCTCTCGGGTTTTTTAGAGATGTCGAATAGTAATGGTTTTGTTGGGGAGTCTAAAAACAGTGGCAAGAGATGGAACATGAATTGTGAATCGGTGATGAATGCTGGCACTGGTTTCCTGAAGGGTAAACAAATTATGGATTCTGAATCATTTTCACCAACAATTGAAGTCTTTATTACTGGTTGCTTCTCCGGGACACCTATCATCTTGACCAAGAGTTTGCAGCTCAATCATCGGAAGAAGCACAACAGGAAGGGTATGTTGCACTCAATCCCGGAGCATGAAACAGATGAGCAGCAGAAAGATGTCTCATCTGAACTTGATCTGCAG : GTTACAGAGTATAGAAAGTATGAACTAGAAAGCGAAGAAGACTACAACATGTATTGGAGACAAACGGAATATATGGATGGTGAAGATGGGGAACTGTCCTGGTTCAATGCTGGGGTCCGTGTTGGTGTAGGGATCGGTCTTGGCATTTGCGTAGGAGTTGGAATAGGAGTTGGCCTGTTAGTCCGCACCTACCAGACTACTACGAGGAACTTCAGAAGGCTTGTGTGATTATGTAGCGTTTGCTGCATTTGTTTTTGCATAGACCAAACGGCTAACAACAGATATATGTTTGTCTTGAGAGTGTGAATTCTGCTCATTAGACAGTTTCAGTGTAGCTAACCATCATACATTTTCGTGTTAACTTACTTCCTGCTAGCTTTTCGTCTTCCCATGCCCCATCCCCGTGTTAAGTTAAGTCTCTTTGTACCTCCTTGTTTTGGATTTAGGTGTGCAAACTCTTACTGTTGTAGATGTTCCATTCTGTT</gDNA_template>
            <first_frame> G  K  G  I  F  *  W  *  N  *  R  R  F  Q  K  E  *  H  H  C  I  L  I  I  F  *  L  T  K  Q  F  G  G  S  *  *  E  K  T  L  L  F  W  E  V  E  S  D  L  K  D  L  W  M  L  V  *  K  *  K  K  *  R  G  F  S  W :   V  L  W  P  T  *  V  P  I  H  G  S  I  M  S  L  S  V  S  G  E  G  F  C  *  G  L  N  M  E  N  G  H  E  L  L  S  N  G  K  P  A  D  P  G  L  Q  I  I  R  H  P  S  Y  Q  S  S  C  G  K  L  L  L  S  W  L  D  I  R  V  F  Y  I  R  V  S  N  F  M  V  D  D  S  T  P  E  Y  L  T  L  N  H  I  P  L  S  P  D  T  L  L  E  V  N  G  T  R  C  S  M  Y  S  E  G  A  S  C  L  L  R  R  D  R  V  D  K  K  S  E  E  A  T  F  V  S  T  D  S  I  R  L  T  G  S  V  K  F  E  V  F  N  K  D  D  L  V  L  S  G  F  L  E  M  S  N  S  N  G  F  V  G  E  S  K  N  S  G  K  R  W  N  M  N  C  E  S  V  M  N  A  G  T  G  F  L  K  G  K  Q  I  M  D  S  E  S  F  S  P  T  I  E  V  F  I  T  G  C  F  S  G  T  P  I  I  L  T  K  S  L  Q  L  N  H  R  K  K  H  N  R  K  G  M  L  H  S  I  P  E  H  E  T  D  E  Q  Q  K  D  V  S  S  E  L  D  L  Q  :  V  T  E  Y  R  K  Y  E  L  E  S  E  E  D  Y  N  M  Y  W  R  Q  T  E  Y  M  D  G  E  D  G  E  L  S  W  F  N  A  G  V  R  V  G  V  G  I  G  L  G  I  C  V  G  V  G  I  G  V  G  L  L  V  R  T  Y  Q  T  T  T  R  N  F  R  R  L  V  *  L  C  S  V  C  C  I  C  F  C  I  D  Q  T  A  N  N  R  Y  M  F  V  L  R  V  *  I  L  L  I  R  Q  F  Q  C  S  *  P  S  Y  I  F  V  L  T  Y  F  L  L  A  F  R  L  P  M  P  H  P  R  V  K  L  S  L  F  V  P  P  C  F  G  F  R  C  A  N  S  Y  C  C  R  C  S  I  L   </first_frame>
            <second_frame>  E  K  A  Y  F  D  G  K  I  E  E  D  S  K  K  S  S  I  T  V  Y  *  L  Y  F  S  *  P  N  S  L  V  E  V  D  E  K  K  H  F  F  F  G  K  S  K  V  I  *  K  I  F  G  C  L  Y  R  S  R  K  N  R  E  D  F  L   : G  F  F  G  L  R  R  S  R  F  M  V  R  L  C  P  Y  R  C  L  V  K  D  S  V  E  D  *  T  W  R  M  V  M  N  Y  S  A  M  E  N  Q  L  I  L  V  S  K  L  L  G  T  P  L  T  N  H  L  V  V  N  Y  C  Y  P  G  *  I  *  E  F  S  I  L  E  S  A  I  L  W  *  M  I  P  P  R  N  I  L  L  S  T  T  F  L  *  V  P  I  H  C  L  K  L  M  E  Q  D  V  P  C  I  Q  K  E  H  L  V  S  F  E  G  I  G  L  I  R  N  P  K  K  L  H  L  *  A  R  I  V  *  G  *  Q  E  V  *  N  L  R  F  S  I  K  M  I  L  C  S  R  V  F  *  R  C  R  I  V  M  V  L  L  G  S  L  K  T  V  A  R  D  G  T  *  I  V  N  R  *  *  M  L  A  L  V  S  *  R  V  N  K  L  W  I  L  N  H  F  H  Q  Q  L  K  S  L  L  L  V  A  S  P  G  H  L  S  S  *  P  R  V  C  S  S  I  I  G  R  S  T  T  G  R  V  C  C  T  Q  S  R  S  M  K  Q  M  S  S  R  K  M  S  H  L  N  L  I  C  R :   L  Q  S  I  E  S  M  N  *  K  A  K  K  T  T  T  C  I  G  D  K  R  N  I  W  M  V  K  M  G  N  C  P  G  S  M  L  G  S  V  L  V  *  G  S  V  L  A  F  A  *  E  L  E  *  E  L  A  C  *  S  A  P  T  R  L  L  R  G  T  S  E  G  L  C  D  Y  V  A  F  A  A  F  V  F  A  *  T  K  R  L  T  T  D  I  C  L  S  *  E  C  E  F  C  S  L  D  S  F  S  V  A  N  H  H  T  F  S  C  *  L  T  S  C  *  L  F  V  F  P  C  P  I  P  V  L  S  *  V  S  L  Y  L  L  V  L  D  L  G  V  Q  T  L  T  V  V  D  V  P  F  C  </second_frame>
            <third_frame>   K  R  H  I  L  M  V  K  L  K  K  I  P  K  R  V  A  S  L  Y  I  D  Y  I  L  A  N  Q  T  V  W  W  K  L  M  R  K  N  T  S  F  L  G  S  R  K  *  F  K  R  S  L  D  A  C  I  E  V  E  K  I  E  R  I  F  L  :  G  S  L  A  Y  V  G  P  D  S  W  F  D  Y  V  L  I  G  V  W  *  R  I  L  L  R  I  K  H  G  E  W  S  *  I  T  Q  Q  W  K  T  S  *  S  W  S  P  N  Y  *  A  P  L  L  P  I  I  L  W  *  I  I  V  I  L  V  R  Y  K  S  F  L  Y  *  S  Q  Q  F  Y  G  R  *  F  H  P  G  I  S  Y  S  Q  P  H  S  S  K  S  R  Y  I  A  *  S  *  W  N  K  M  F  H  V  F  R  R  S  I  L  S  P  S  K  G  *  G  *  *  E  I  R  R  S  Y  I  C  E  H  G  *  Y  K  V  D  R  K  C  E  I  *  G  F  Q  *  R  *  S  C  A  L  G  F  F  R  D  V  E  *  *  W  F  C  W  G  V  *  K  Q  W  Q  E  M  E  H  E  L  *  I  G  D  E  C  W  H  W  F  P  E  G  *  T  N  Y  G  F  *  I  I  F  T  N  N  *  S  L  Y  Y  W  L  L  L  R  D  T  Y  H  L  D  Q  E  F  A  A  Q  S  S  E  E  A  Q  Q  E  G  Y  V  A  L  N  P  G  A  *  N  R  *  A  A  E  R  C  L  I  *  T  *  S  A   : G  Y  R  V  *  K  V  *  T  R  K  R  R  R  L  Q  H  V  L  E  T  N  G  I  Y  G  W  *  R  W  G  T  V  L  V  Q  C  W  G  P  C  W  C  R  D  R  S  W  H  L  R  R  S  W  N  R  S  W  P  V  S  P  H  L  P  D  Y  Y  E  E  L  Q  K  A  C  V  I  M  *  R  L  L  H  L  F  L  H  R  P  N  G  *  Q  Q  I  Y  V  C  L  E  S  V  N  S  A  H  *  T  V  S  V  *  L  T  I  I  H  F  R  V  N  L  L  P  A  S  F  S  S  S  H  A  P  S  P  C  *  V  K  S  L  C  T  S  L  F  W  I  *  V  C  K  L  L  L  L  *  M  F  H  S  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0079B07.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92619" stop="91900"/>
                    <exon start="90039" stop="89812"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>945</number_coding_nucleotides>
                  <number_encoded_amino_acids>315</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLNMENGHELLSNGKPADPGLQIIRHPSYQSSCGKLLLSWLDIRVFYIRVSNFMVDDSTPEYLTLNHIPLSPDTLLEVNGTRCSMYSEGASCLLRRDRVDKKSEEATFVSTDSIRLTGSVKFEVFNKDDLVLSGFLEMSNSNGFVGESKNSGKRWNMNCESVMNAGTGFLKGKQIMDSESFSPTIEVFITGCFSGTPIILTKSLQLNHRKKHNRKGMLHSIPEHETDEQQKDVSSELDLQVTEYRKYELESEEDYNMYWRQTEYMDGEDGELSWFNAGVRVGVGIGLGICVGVGIGVGLLVRTYQTTTRNFRRLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="93769" e_stop="93666"/>
            <exon e_start="92676" e_stop="91900"/>
            <exon e_start="90039" e_stop="89555"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.824" e_score="0.894"/>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="0.974"/>
          <exon-only e_score="0.942"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.894">
            <gDNA_exon_boundary e_start="93769" e_stop="93666" e_length="104"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.824">
            <gDNA_intron_boundary i_start="93665" i_stop="92677" i_length="989"/>
          </intron>
          <exon e_serial="2" e_score="0.974">
            <gDNA_exon_boundary e_start="92676" e_stop="91900" e_length="777"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="91899" i_stop="90040" i_length="1860"/>
          </intron>
          <exon e_serial="3" e_score="0.942">
            <gDNA_exon_boundary e_start="90039" e_stop="89555" e_length="485"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93769" stop="93666"/>
              <exon start="92676" stop="92253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92643" stop="92359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92440" stop="91900"/>
              <exon start="90039" stop="89961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92174" stop="91900"/>
              <exon start="90039" stop="89555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431587" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89847" stop="89555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464628" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGCTTGGATTTTTGAGCCAGTTTAGTTCTTGATTTTGAGATTGAAATGTGGTAAAGATTGCAACTTTGGATTGTTTTTTTGATTTGTCATCTGAAACTACTG : GTCCCGATTCATGGTTCGATTATGTCCTTATCGGTGTCTGGTGAAGGATTCTGTTGAGGATTAAACATGGAGAATGGTCATGAATTACTCAGCAATGGAAAACCAGCTGATCCTGGTCTCCAAATTATTAGGCACCCCTCTTACCAATCATCTTGTGGTAAATTATTGTTATCCTGGTTAGATATAAGAGTTTTCTATATTAGAGTCAGCAATTTTATGGTAGATGATTCCACCCCGGAATATCTTACTCTCAACCACATTCCTCTAAGTCCCGATACATTGCTTGAAGTTAATGGAACAAGATGTTCCATGTATTCAGAAGGAGCATCTTGTCTCCTTCGAAGGGATAGGGTTGATAAGAAATCCGAAGAAGCTACATTTGTGAGCACGGATAGTATAAGGTTGACAGGAAGTGTGAAATTTGAGGTTTTCAATAAAGATGATCTTGTGCTCTCGGGTTTTTTAGAGATGTCGAATAGTAATGGTTTTGTTGGGGAGTCTAAAAACAGTGGCAAGAGATGGAACATGAATTGTGAATCGGTGATGAATGCTGGCACTGGTTTCCTGAAGGGTAAACAAATTATGGATTCTGAATCATTTTCACCAACAATTGAAGTCTTTATTACTGGTTGCTTCTCCGGGACACCTATCATCTTGACCAAGAGTTTGCAGCTCAATCATCGGAAGAAGCACAACAGGAAGGGTATGTTGCACTCAATCCCGGAGCATGAAACAGATGAGCAGCAGAAAGATGTCTCATCTGAACTTGATCTGCAG : GTTACAGAGTATAGAAAGTATGAACTAGAAAGCGAAGAAGACTACAACATGTATTGGAGACAAACGGAATATATGGATGGTGAAGATGGGGAACTGTCCTGGTTCAATGCTGGGGTCCGTGTTGGTGTAGGGATCGGTCTTGGCATTTGCGTAGGAGTTGGAATAGGAGTTGGCCTGTTAGTCCGCACCTACCAGACTACTACGAGGAACTTCAGAAGGCTTGTGTGATTATGTAGCGTTTGCTGCATTTGTTTTTGCATAGACCAAACGGCTAACAACAGATATATGTTTGTCTTGAGAGTGTGAATTCTGCTCATTAGACAGTTTCAGTGTAGCTAACCATCATACATTTTCGTGTTAACTTACTTCCTGCTAGCTTTTCGTCTTCCCATGCCCCATCCCCGTGTTAAGTTAAGTCTCTTTGTACCTCCTTGTTTTGGATTTAGGTGTGCAAACTCTTACTGTTGTAGATGTTCCATTCTGTT</gDNA_template>
            <first_frame> F  A  W  I  F  E  P  V  *  F  L  I  L  R  L  K  C  G  K  D  C  N  F  G  L  F  F  *  F  V  I  *  N  Y  W :   S  R  F  M  V  R  L  C  P  Y  R  C  L  V  K  D  S  V  E  D  *  T  W  R  M  V  M  N  Y  S  A  M  E  N  Q  L  I  L  V  S  K  L  L  G  T  P  L  T  N  H  L  V  V  N  Y  C  Y  P  G  *  I  *  E  F  S  I  L  E  S  A  I  L  W  *  M  I  P  P  R  N  I  L  L  S  T  T  F  L  *  V  P  I  H  C  L  K  L  M  E  Q  D  V  P  C  I  Q  K  E  H  L  V  S  F  E  G  I  G  L  I  R  N  P  K  K  L  H  L  *  A  R  I  V  *  G  *  Q  E  V  *  N  L  R  F  S  I  K  M  I  L  C  S  R  V  F  *  R  C  R  I  V  M  V  L  L  G  S  L  K  T  V  A  R  D  G  T  *  I  V  N  R  *  *  M  L  A  L  V  S  *  R  V  N  K  L  W  I  L  N  H  F  H  Q  Q  L  K  S  L  L  L  V  A  S  P  G  H  L  S  S  *  P  R  V  C  S  S  I  I  G  R  S  T  T  G  R  V  C  C  T  Q  S  R  S  M  K  Q  M  S  S  R  K  M  S  H  L  N  L  I  C  R :   L  Q  S  I  E  S  M  N  *  K  A  K  K  T  T  T  C  I  G  D  K  R  N  I  W  M  V  K  M  G  N  C  P  G  S  M  L  G  S  V  L  V  *  G  S  V  L  A  F  A  *  E  L  E  *  E  L  A  C  *  S  A  P  T  R  L  L  R  G  T  S  E  G  L  C  D  Y  V  A  F  A  A  F  V  F  A  *  T  K  R  L  T  T  D  I  C  L  S  *  E  C  E  F  C  S  L  D  S  F  S  V  A  N  H  H  T  F  S  C  *  L  T  S  C  *  L  F  V  F  P  C  P  I  P  V  L  S  *  V  S  L  Y  L  L  V  L  D  L  G  V  Q  T  L  T  V  V  D  V  P  F  C  </first_frame>
            <second_frame>  L  L  G  F  L  S  Q  F  S  S  *  F  *  D  *  N  V  V  K  I  A  T  L  D  C  F  F  D  L  S  S  E  T  T   : G  P  D  S  W  F  D  Y  V  L  I  G  V  W  *  R  I  L  L  R  I  K  H  G  E  W  S  *  I  T  Q  Q  W  K  T  S  *  S  W  S  P  N  Y  *  A  P  L  L  P  I  I  L  W  *  I  I  V  I  L  V  R  Y  K  S  F  L  Y  *  S  Q  Q  F  Y  G  R  *  F  H  P  G  I  S  Y  S  Q  P  H  S  S  K  S  R  Y  I  A  *  S  *  W  N  K  M  F  H  V  F  R  R  S  I  L  S  P  S  K  G  *  G  *  *  E  I  R  R  S  Y  I  C  E  H  G  *  Y  K  V  D  R  K  C  E  I  *  G  F  Q  *  R  *  S  C  A  L  G  F  F  R  D  V  E  *  *  W  F  C  W  G  V  *  K  Q  W  Q  E  M  E  H  E  L  *  I  G  D  E  C  W  H  W  F  P  E  G  *  T  N  Y  G  F  *  I  I  F  T  N  N  *  S  L  Y  Y  W  L  L  L  R  D  T  Y  H  L  D  Q  E  F  A  A  Q  S  S  E  E  A  Q  Q  E  G  Y  V  A  L  N  P  G  A  *  N  R  *  A  A  E  R  C  L  I  *  T  *  S  A   : G  Y  R  V  *  K  V  *  T  R  K  R  R  R  L  Q  H  V  L  E  T  N  G  I  Y  G  W  *  R  W  G  T  V  L  V  Q  C  W  G  P  C  W  C  R  D  R  S  W  H  L  R  R  S  W  N  R  S  W  P  V  S  P  H  L  P  D  Y  Y  E  E  L  Q  K  A  C  V  I  M  *  R  L  L  H  L  F  L  H  R  P  N  G  *  Q  Q  I  Y  V  C  L  E  S  V  N  S  A  H  *  T  V  S  V  *  L  T  I  I  H  F  R  V  N  L  L  P  A  S  F  S  S  S  H  A  P  S  P  C  *  V  K  S  L  C  T  S  L  F  W  I  *  V  C  K  L  L  L  L  *  M  F  H  S  V </second_frame>
            <third_frame>   C  L  D  F  *  A  S  L  V  L  D  F  E  I  E  M  W  *  R  L  Q  L  W  I  V  F  L  I  C  H  L  K  L  L  :  V  P  I  H  G  S  I  M  S  L  S  V  S  G  E  G  F  C  *  G  L  N  M  E  N  G  H  E  L  L  S  N  G  K  P  A  D  P  G  L  Q  I  I  R  H  P  S  Y  Q  S  S  C  G  K  L  L  L  S  W  L  D  I  R  V  F  Y  I  R  V  S  N  F  M  V  D  D  S  T  P  E  Y  L  T  L  N  H  I  P  L  S  P  D  T  L  L  E  V  N  G  T  R  C  S  M  Y  S  E  G  A  S  C  L  L  R  R  D  R  V  D  K  K  S  E  E  A  T  F  V  S  T  D  S  I  R  L  T  G  S  V  K  F  E  V  F  N  K  D  D  L  V  L  S  G  F  L  E  M  S  N  S  N  G  F  V  G  E  S  K  N  S  G  K  R  W  N  M  N  C  E  S  V  M  N  A  G  T  G  F  L  K  G  K  Q  I  M  D  S  E  S  F  S  P  T  I  E  V  F  I  T  G  C  F  S  G  T  P  I  I  L  T  K  S  L  Q  L  N  H  R  K  K  H  N  R  K  G  M  L  H  S  I  P  E  H  E  T  D  E  Q  Q  K  D  V  S  S  E  L  D  L  Q  :  V  T  E  Y  R  K  Y  E  L  E  S  E  E  D  Y  N  M  Y  W  R  Q  T  E  Y  M  D  G  E  D  G  E  L  S  W  F  N  A  G  V  R  V  G  V  G  I  G  L  G  I  C  V  G  V  G  I  G  V  G  L  L  V  R  T  Y  Q  T  T  T  R  N  F  R  R  L  V  *  L  C  S  V  C  C  I  C  F  C  I  D  Q  T  A  N  N  R  Y  M  F  V  L  R  V  *  I  L  L  I  R  Q  F  Q  C  S  *  P  S  Y  I  F  V  L  T  Y  F  L  L  A  F  R  L  P  M  P  H  P  R  V  K  L  S  L  F  V  P  P  C  F  G  F  R  C  A  N  S  Y  C  C  R  C  S  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0079B07.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92619" stop="91900"/>
                    <exon start="90039" stop="89812"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>945</number_coding_nucleotides>
                  <number_encoded_amino_acids>315</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLNMENGHELLSNGKPADPGLQIIRHPSYQSSCGKLLLSWLDIRVFYIRVSNFMVDDSTPEYLTLNHIPLSPDTLLEVNGTRCSMYSEGASCLLRRDRVDKKSEEATFVSTDSIRLTGSVKFEVFNKDDLVLSGFLEMSNSNGFVGESKNSGKRWNMNCESVMNAGTGFLKGKQIMDSESFSPTIEVFITGCFSGTPIILTKSLQLNHRKKHNRKGMLHSIPEHETDEQQKDVSSELDLQVTEYRKYELESEEDYNMYWRQTEYMDGEDGELSWFNAGVRVGVGIGLGICVGVGIGVGLLVRTYQTTTRNFRRLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="93981" e_stop="93902"/>
            <exon e_start="92695" e_stop="91900"/>
            <exon e_start="90039" e_stop="89555"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.857" e_score="0.988"/>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.942"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="93981" e_stop="93902" e_length="80"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.857">
            <gDNA_intron_boundary i_start="93901" i_stop="92696" i_length="1206"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="92695" e_stop="91900" e_length="796"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="91899" i_stop="90040" i_length="1860"/>
          </intron>
          <exon e_serial="3" e_score="0.942">
            <gDNA_exon_boundary e_start="90039" e_stop="89555" e_length="485"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93981" stop="93902"/>
              <exon start="92695" stop="92145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92643" stop="92359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92440" stop="91900"/>
              <exon start="90039" stop="89961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92174" stop="91900"/>
              <exon start="90039" stop="89555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431587" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89847" stop="89555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464628" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTCTTGGTGAGTATATCAAAAGTTGAGAAATTTTTTGGATTTTGTATGTAATTTTCTCTTTCATTTCATGGGTAAAAG : GGTTCTTTGGCCTACGTAGGTCCCGATTCATGGTTCGATTATGTCCTTATCGGTGTCTGGTGAAGGATTCTGTTGAGGATTAAACATGGAGAATGGTCATGAATTACTCAGCAATGGAAAACCAGCTGATCCTGGTCTCCAAATTATTAGGCACCCCTCTTACCAATCATCTTGTGGTAAATTATTGTTATCCTGGTTAGATATAAGAGTTTTCTATATTAGAGTCAGCAATTTTATGGTAGATGATTCCACCCCGGAATATCTTACTCTCAACCACATTCCTCTAAGTCCCGATACATTGCTTGAAGTTAATGGAACAAGATGTTCCATGTATTCAGAAGGAGCATCTTGTCTCCTTCGAAGGGATAGGGTTGATAAGAAATCCGAAGAAGCTACATTTGTGAGCACGGATAGTATAAGGTTGACAGGAAGTGTGAAATTTGAGGTTTTCAATAAAGATGATCTTGTGCTCTCGGGTTTTTTAGAGATGTCGAATAGTAATGGTTTTGTTGGGGAGTCTAAAAACAGTGGCAAGAGATGGAACATGAATTGTGAATCGGTGATGAATGCTGGCACTGGTTTCCTGAAGGGTAAACAAATTATGGATTCTGAATCATTTTCACCAACAATTGAAGTCTTTATTACTGGTTGCTTCTCCGGGACACCTATCATCTTGACCAAGAGTTTGCAGCTCAATCATCGGAAGAAGCACAACAGGAAGGGTATGTTGCACTCAATCCCGGAGCATGAAACAGATGAGCAGCAGAAAGATGTCTCATCTGAACTTGATCTGCAG : GTTACAGAGTATAGAAAGTATGAACTAGAAAGCGAAGAAGACTACAACATGTATTGGAGACAAACGGAATATATGGATGGTGAAGATGGGGAACTGTCCTGGTTCAATGCTGGGGTCCGTGTTGGTGTAGGGATCGGTCTTGGCATTTGCGTAGGAGTTGGAATAGGAGTTGGCCTGTTAGTCCGCACCTACCAGACTACTACGAGGAACTTCAGAAGGCTTGTGTGATTATGTAGCGTTTGCTGCATTTGTTTTTGCATAGACCAAACGGCTAACAACAGATATATGTTTGTCTTGAGAGTGTGAATTCTGCTCATTAGACAGTTTCAGTGTAGCTAACCATCATACATTTTCGTGTTAACTTACTTCCTGCTAGCTTTTCGTCTTCCCATGCCCCATCCCCGTGTTAAGTTAAGTCTCTTTGTACCTCCTTGTTTTGGATTTAGGTGTGCAAACTCTTACTGTTGTAGATGTTCCATTCTGTT</gDNA_template>
            <first_frame> F  S  W  *  V  Y  Q  K  L  R  N  F  L  D  F  V  C  N  F  L  F  H  F  M  G  K  R :   V  L  W  P  T  *  V  P  I  H  G  S  I  M  S  L  S  V  S  G  E  G  F  C  *  G  L  N  M  E  N  G  H  E  L  L  S  N  G  K  P  A  D  P  G  L  Q  I  I  R  H  P  S  Y  Q  S  S  C  G  K  L  L  L  S  W  L  D  I  R  V  F  Y  I  R  V  S  N  F  M  V  D  D  S  T  P  E  Y  L  T  L  N  H  I  P  L  S  P  D  T  L  L  E  V  N  G  T  R  C  S  M  Y  S  E  G  A  S  C  L  L  R  R  D  R  V  D  K  K  S  E  E  A  T  F  V  S  T  D  S  I  R  L  T  G  S  V  K  F  E  V  F  N  K  D  D  L  V  L  S  G  F  L  E  M  S  N  S  N  G  F  V  G  E  S  K  N  S  G  K  R  W  N  M  N  C  E  S  V  M  N  A  G  T  G  F  L  K  G  K  Q  I  M  D  S  E  S  F  S  P  T  I  E  V  F  I  T  G  C  F  S  G  T  P  I  I  L  T  K  S  L  Q  L  N  H  R  K  K  H  N  R  K  G  M  L  H  S  I  P  E  H  E  T  D  E  Q  Q  K  D  V  S  S  E  L  D  L  Q  :  V  T  E  Y  R  K  Y  E  L  E  S  E  E  D  Y  N  M  Y  W  R  Q  T  E  Y  M  D  G  E  D  G  E  L  S  W  F  N  A  G  V  R  V  G  V  G  I  G  L  G  I  C  V  G  V  G  I  G  V  G  L  L  V  R  T  Y  Q  T  T  T  R  N  F  R  R  L  V  *  L  C  S  V  C  C  I  C  F  C  I  D  Q  T  A  N  N  R  Y  M  F  V  L  R  V  *  I  L  L  I  R  Q  F  Q  C  S  *  P  S  Y  I  F  V  L  T  Y  F  L  L  A  F  R  L  P  M  P  H  P  R  V  K  L  S  L  F  V  P  P  C  F  G  F  R  C  A  N  S  Y  C  C  R  C  S  I  L   </first_frame>
            <second_frame>  F  L  G  E  Y  I  K  S  *  E  I  F  W  I  L  Y  V  I  F  S  F  I  S  W  V  K   : G  F  F  G  L  R  R  S  R  F  M  V  R  L  C  P  Y  R  C  L  V  K  D  S  V  E  D  *  T  W  R  M  V  M  N  Y  S  A  M  E  N  Q  L  I  L  V  S  K  L  L  G  T  P  L  T  N  H  L  V  V  N  Y  C  Y  P  G  *  I  *  E  F  S  I  L  E  S  A  I  L  W  *  M  I  P  P  R  N  I  L  L  S  T  T  F  L  *  V  P  I  H  C  L  K  L  M  E  Q  D  V  P  C  I  Q  K  E  H  L  V  S  F  E  G  I  G  L  I  R  N  P  K  K  L  H  L  *  A  R  I  V  *  G  *  Q  E  V  *  N  L  R  F  S  I  K  M  I  L  C  S  R  V  F  *  R  C  R  I  V  M  V  L  L  G  S  L  K  T  V  A  R  D  G  T  *  I  V  N  R  *  *  M  L  A  L  V  S  *  R  V  N  K  L  W  I  L  N  H  F  H  Q  Q  L  K  S  L  L  L  V  A  S  P  G  H  L  S  S  *  P  R  V  C  S  S  I  I  G  R  S  T  T  G  R  V  C  C  T  Q  S  R  S  M  K  Q  M  S  S  R  K  M  S  H  L  N  L  I  C  R :   L  Q  S  I  E  S  M  N  *  K  A  K  K  T  T  T  C  I  G  D  K  R  N  I  W  M  V  K  M  G  N  C  P  G  S  M  L  G  S  V  L  V  *  G  S  V  L  A  F  A  *  E  L  E  *  E  L  A  C  *  S  A  P  T  R  L  L  R  G  T  S  E  G  L  C  D  Y  V  A  F  A  A  F  V  F  A  *  T  K  R  L  T  T  D  I  C  L  S  *  E  C  E  F  C  S  L  D  S  F  S  V  A  N  H  H  T  F  S  C  *  L  T  S  C  *  L  F  V  F  P  C  P  I  P  V  L  S  *  V  S  L  Y  L  L  V  L  D  L  G  V  Q  T  L  T  V  V  D  V  P  F  C  </second_frame>
            <third_frame>   F  L  V  S  I  S  K  V  E  K  F  F  G  F  C  M  *  F  S  L  S  F  H  G  *  K  :  G  S  L  A  Y  V  G  P  D  S  W  F  D  Y  V  L  I  G  V  W  *  R  I  L  L  R  I  K  H  G  E  W  S  *  I  T  Q  Q  W  K  T  S  *  S  W  S  P  N  Y  *  A  P  L  L  P  I  I  L  W  *  I  I  V  I  L  V  R  Y  K  S  F  L  Y  *  S  Q  Q  F  Y  G  R  *  F  H  P  G  I  S  Y  S  Q  P  H  S  S  K  S  R  Y  I  A  *  S  *  W  N  K  M  F  H  V  F  R  R  S  I  L  S  P  S  K  G  *  G  *  *  E  I  R  R  S  Y  I  C  E  H  G  *  Y  K  V  D  R  K  C  E  I  *  G  F  Q  *  R  *  S  C  A  L  G  F  F  R  D  V  E  *  *  W  F  C  W  G  V  *  K  Q  W  Q  E  M  E  H  E  L  *  I  G  D  E  C  W  H  W  F  P  E  G  *  T  N  Y  G  F  *  I  I  F  T  N  N  *  S  L  Y  Y  W  L  L  L  R  D  T  Y  H  L  D  Q  E  F  A  A  Q  S  S  E  E  A  Q  Q  E  G  Y  V  A  L  N  P  G  A  *  N  R  *  A  A  E  R  C  L  I  *  T  *  S  A   : G  Y  R  V  *  K  V  *  T  R  K  R  R  R  L  Q  H  V  L  E  T  N  G  I  Y  G  W  *  R  W  G  T  V  L  V  Q  C  W  G  P  C  W  C  R  D  R  S  W  H  L  R  R  S  W  N  R  S  W  P  V  S  P  H  L  P  D  Y  Y  E  E  L  Q  K  A  C  V  I  M  *  R  L  L  H  L  F  L  H  R  P  N  G  *  Q  Q  I  Y  V  C  L  E  S  V  N  S  A  H  *  T  V  S  V  *  L  T  I  I  H  F  R  V  N  L  L  P  A  S  F  S  S  S  H  A  P  S  P  C  *  V  K  S  L  C  T  S  L  F  W  I  *  V  C  K  L  L  L  L  *  M  F  H  S  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0079B07.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92619" stop="91900"/>
                    <exon start="90039" stop="89812"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>945</number_coding_nucleotides>
                  <number_encoded_amino_acids>315</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLNMENGHELLSNGKPADPGLQIIRHPSYQSSCGKLLLSWLDIRVFYIRVSNFMVDDSTPEYLTLNHIPLSPDTLLEVNGTRCSMYSEGASCLLRRDRVDKKSEEATFVSTDSIRLTGSVKFEVFNKDDLVLSGFLEMSNSNGFVGESKNSGKRWNMNCESVMNAGTGFLKGKQIMDSESFSPTIEVFITGCFSGTPIILTKSLQLNHRKKHNRKGMLHSIPEHETDEQQKDVSSELDLQVTEYRKYELESEEDYNMYWRQTEYMDGEDGELSWFNAGVRVGVGIGLGICVGVGIGVGLLVRTYQTTTRNFRRLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="102063" PGL_stop="96888"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102063" e_stop="101889"/>
            <exon e_start="99296" e_stop="99231"/>
            <exon e_start="98752" e_stop="98639"/>
            <exon e_start="98274" e_stop="98161"/>
            <exon e_start="98070" e_stop="97877"/>
            <exon e_start="97372" e_stop="97282"/>
            <exon e_start="97167" e_stop="97102"/>
            <exon e_start="96988" e_stop="96888"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.985" e_score="0.891"/>
          <exon-intron don_prob="0.996" acc_prob="0.906" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.891">
            <gDNA_exon_boundary e_start="102063" e_stop="101889" e_length="175"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.985">
            <gDNA_intron_boundary i_start="101888" i_stop="99297" i_length="2592"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="99296" e_stop="99231" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.906">
            <gDNA_intron_boundary i_start="99230" i_stop="98753" i_length="478"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="98752" e_stop="98639" e_length="114"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.965">
            <gDNA_intron_boundary i_start="98638" i_stop="98275" i_length="364"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="98274" e_stop="98161" e_length="114"/>
          </exon>
          <intron i_serial="4" don_prob="0.974" acc_prob="0.995">
            <gDNA_intron_boundary i_start="98160" i_stop="98071" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="98070" e_stop="97877" e_length="194"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.972">
            <gDNA_intron_boundary i_start="97876" i_stop="97373" i_length="504"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="97372" e_stop="97282" e_length="91"/>
          </exon>
          <intron i_serial="6" don_prob="0.923" acc_prob="0.996">
            <gDNA_intron_boundary i_start="97281" i_stop="97168" i_length="114"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="97167" e_stop="97102" e_length="66"/>
          </exon>
          <intron i_serial="7" don_prob="0.986" acc_prob="0.995">
            <gDNA_intron_boundary i_start="97101" i_stop="96989" i_length="113"/>
          </intron>
          <exon e_serial="8" e_score="0.990">
            <gDNA_exon_boundary e_start="96988" e_stop="96888" e_length="101"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102063" stop="101889"/>
              <exon start="99296" stop="99231"/>
              <exon start="98752" stop="98639"/>
              <exon start="98274" stop="98161"/>
              <exon start="98070" stop="97877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102001" stop="101889"/>
              <exon start="99296" stop="99231"/>
              <exon start="98752" stop="98639"/>
              <exon start="98274" stop="98161"/>
              <exon start="98070" stop="97877"/>
              <exon start="97372" stop="97282"/>
              <exon start="97167" stop="97102"/>
              <exon start="96988" stop="96888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700747" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACCAAAATCACTTTTTTTTTTGGAAGGAGAAAAATAAAACTTCCTTCTTCTGCAGAAATCACAGCGACATAGCGAAGCATCAAAATGGATCTCTGAAACTGTAGCTGAGAAAATCAGTGATCCTTCAATTGCTTACAATCTGCGTTAGCTTCTCCATCTTCGTCTTGTTGCGAG : TTGGTGTTGAAGATGTCTTCAGCTCAAGATCCTTTCTATATTGTCAAGGAGGAAATTCAAGAATCT : ATTGACAAGCTCTTGTCCACGTTTCATCAATGGGAGCAAACTTCTGCCGGAAGTAGTGAGCAAGTACATCTTACCAAAGAACTTCTTGCTTCATCTGAGAGCATTGAGTGGCAG : GTGGATGAATTGGACAAAACAATTGATGTTGCAGCAAGAGATCCTTCTTGGTATGGTATTAATGATATTGAGCTTGATAAGAGAAGAAGATGGACCAGCAATGCCCGTGCTCAA : GTGGGAAGCATGAAGAAAGCTGTAGTAGCTGGAAAACAGTCAAATGGGACAAGTACATCTAATCTGAGTGGGATGCGGCGAGAACTGTTGAGATTGCCAGATTCTGAACAGAAAGAGAGATCCAATGCATACAATGCCCGAGATAATGATGACTTCATATCATCAGAATCAGATAGACAATTACTTCTTATGAG : GCAACAGGATGAAGAACTAGACGAGCTTAGTGCCAGCGTAGTCAGAATTGGAGATGTTGGGCTCACCATACACGATGAACTTCTTGCACAC : GAGAAGATCTTAAGTGAGTTGGACACGGAGATGGACAGTACATCAAATCGTCTAGATTTCATTCAG : AAAAAGATTGGCATGGTAATGAAGAAGGCGAGCGTCAAGGGACAGATGATGATGATTTGTTTTCTGATAGTTTTATTTATTGTTCTTTTTGTTCTGGTTTT</gDNA_template>
            <first_frame> D  Q  N  H  F  F  F  W  K  E  K  N  K  T  S  F  F  C  R  N  H  S  D  I  A  K  H  Q  N  G  S  L  K  L  *  L  R  K  S  V  I  L  Q  L  L  T  I  C  V  S  F  S  I  F  V  L  L  R   : V  G  V  E  D  V  F  S  S  R  S  F  L  Y  C  Q  G  G  N  S  R  I   : Y  *  Q  A  L  V  H  V  S  S  M  G  A  N  F  C  R  K  *  *  A  S  T  S  Y  Q  R  T  S  C  F  I  *  E  H  *  V  A   : G  G  *  I  G  Q  N  N  *  C  C  S  K  R  S  F  L  V  W  Y  *  *  Y  *  A  *  *  E  K  K  M  D  Q  Q  C  P  C  S   : S  G  K  H  E  E  S  C  S  S  W  K  T  V  K  W  D  K  Y  I  *  S  E  W  D  A  A  R  T  V  E  I  A  R  F  *  T  E  R  E  I  Q  C  I  Q  C  P  R  *  *  *  L  H  I  I  R  I  R  *  T  I  T  S  Y  E  :  A  T  G  *  R  T  R  R  A  *  C  Q  R  S  Q  N  W  R  C  W  A  H  H  T  R  *  T  S  C  T   : R  E  D  L  K  *  V  G  H  G  D  G  Q  Y  I  K  S  S  R  F  H  S   : E  K  D  W  H  G  N  E  E  G  E  R  Q  G  T  D  D  D  D  L  F  S  D  S  F  I  Y  C  S  F  C  S  G  F </first_frame>
            <second_frame>  T  K  I  T  F  F  F  G  R  R  K  I  K  L  P  S  S  A  E  I  T  A  T  *  R  S  I  K  M  D  L  *  N  C  S  *  E  N  Q  *  S  F  N  C  L  Q  S  A  L  A  S  P  S  S  S  C  C  E  :  L  V  L  K  M  S  S  A  Q  D  P  F  Y  I  V  K  E  E  I  Q  E  S  :  I  D  K  L  L  S  T  F  H  Q  W  E  Q  T  S  A  G  S  S  E  Q  V  H  L  T  K  E  L  L  A  S  S  E  S  I  E  W  Q  :  V  D  E  L  D  K  T  I  D  V  A  A  R  D  P  S  W  Y  G  I  N  D  I  E  L  D  K  R  R  R  W  T  S  N  A  R  A  Q  :  V  G  S  M  K  K  A  V  V  A  G  K  Q  S  N  G  T  S  T  S  N  L  S  G  M  R  R  E  L  L  R  L  P  D  S  E  Q  K  E  R  S  N  A  Y  N  A  R  D  N  D  D  F  I  S  S  E  S  D  R  Q  L  L  L  M  R :   Q  Q  D  E  E  L  D  E  L  S  A  S  V  V  R  I  G  D  V  G  L  T  I  H  D  E  L  L  A  H  :  E  K  I  L  S  E  L  D  T  E  M  D  S  T  S  N  R  L  D  F  I  Q  :  K  K  I  G  M  V  M  K  K  A  S  V  K  G  Q  M  M  M  I  C  F  L  I  V  L  F  I  V  L  F  V  L  V   </second_frame>
            <third_frame>   P  K  S  L  F  F  L  E  G  E  K  *  N  F  L  L  L  Q  K  S  Q  R  H  S  E  A  S  K  W  I  S  E  T  V  A  E  K  I  S  D  P  S  I  A  Y  N  L  R  *  L  L  H  L  R  L  V  A  S :   W  C  *  R  C  L  Q  L  K  I  L  S  I  L  S  R  R  K  F  K  N  L :   L  T  S  S  C  P  R  F  I  N  G  S  K  L  L  P  E  V  V  S  K  Y  I  L  P  K  N  F  L  L  H  L  R  A  L  S  G  R :   W  M  N  W  T  K  Q  L  M  L  Q  Q  E  I  L  L  G  M  V  L  M  I  L  S  L  I  R  E  E  D  G  P  A  M  P  V  L  K :   W  E  A  *  R  K  L  *  *  L  E  N  S  Q  M  G  Q  V  H  L  I  *  V  G  C  G  E  N  C  *  D  C  Q  I  L  N  R  K  R  D  P  M  H  T  M  P  E  I  M  M  T  S  Y  H  Q  N  Q  I  D  N  Y  F  L  *   : G  N  R  M  K  N  *  T  S  L  V  P  A  *  S  E  L  E  M  L  G  S  P  Y  T  M  N  F  L  H  T :   R  R  S  *  V  S  W  T  R  R  W  T  V  H  Q  I  V  *  I  S  F  R :   K  R  L  A  W  *  *  R  R  R  A  S  R  D  R  *  *  *  F  V  F  *  *  F  Y  L  L  F  F  L  F  W  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0079B07.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101942" stop="101889"/>
                    <exon start="99296" stop="99231"/>
                    <exon start="98752" stop="98639"/>
                    <exon start="98274" stop="98161"/>
                    <exon start="98070" stop="97877"/>
                    <exon start="97372" stop="97282"/>
                    <exon start="97167" stop="97102"/>
                    <exon start="96988" stop="96890"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>798</number_coding_nucleotides>
                  <number_encoded_amino_acids>266</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFNCLQSALASPSSSCCELVLKMSSAQDPFYIVKEEIQESIDKLLSTFHQWEQTSAGSSEQVHLTKELLASSESIEWQVDELDKTIDVAARDPSWYGINDIELDKRRRWTSNARAQVGSMKKAVVAGKQSNGTSTSNLSGMRRELLRLPDSEQKERSNAYNARDNDDFISSESDRQLLLMRQQDEELDELSASVVRIGDVGLTIHDELLAHEKILSELDTEMDSTSNRLDFIQKKIGMVMKKASVKGQMMMICFLIVLFIVLFVLV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 545 chains have been computed
$ 
$ memory statistics:
$ 562608 bytes spliced alignments in total
$ 260 spliced alignments have been stored
$ 2163 bytes was the average size of a spliced alignment
$ 27800 bytes predicted gene locations in total
$ 14 predicted gene locations have been stored
$ 1985 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 592 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-18 02:35:37
-->
