<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-18 05:34:59"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270798" ref_strand="+" ref_description="SGN-E270798 [cLEM-6-G13]">
      <seq>atgttacctcaagtgcagcttttgttcatggtggtgttcttggaaatggggttgattttgatgtttctgttcagaacccctttgaggaaactgataattatgagtcttgatcgtgttaaaagaggcagtggaccgttgattgttaaatctgtagcagctactgttcttgtgatcatgatttatactgtttattctattaaggaattgcagtctcggcctgctgattctgtgaatcctaccgatcaaatccttcttgctcatcagattcttgaagctgctcttatgggattctctctattcctcggactgatgattgacaggctacaccattacataagggagcttcgattactaaggaagaccatggaggctgtgaagaagcaggatcgtacattggacaacatcaagaacggcgaggccagtaccttaagggatgaaatctcctccttgaggaacaggatgaagcagctggaatcagaatcggaggcaaaagaaaaggaggtgcaatctcagagagcaaattctgattctctcaagggtcaatctgaaaaattgctgcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0090D09.1" temp_strand="-" temp_description="C12HBa0090D09.1  AC212766.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0090D09 upload_account_name:italy">
        <position start="10447" stop="5120"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10147" g_stop="9862" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9861" i_stop="5696" i_length="4166">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5695" g_stop="5420" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="562" r_length="276" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0090D09.1" gen_strand="-" ref_id="SGN-E270798" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0090D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10147" e_stop="9862"/>
          <exon e_start="5695" e_stop="5420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTACCTCAAGTGCAGCTTTTGTTCATGGTGGTGTTCTTGGAAATGGGGTTGATTTTGATGTTTCTGTTCAGAACCCCTTTGAGGAAACTGATAATTATGAGTCTTGATCGTGTTAAAAGAGGCAGTGGACCGTTGATTGTTAAATCTGTAGCAGCTACTGTTCTTGTGATCATGATTTATACTGTTTATTCTATTAAGGAATTGCAGTCTCGGCCTGCTGATTCTGTGAATCCTACCGATCAAATCCTTCTTGCTCATCAGATTCTTGAAGCTGCTCTTATGGGTATGTTTCTTTTTTTTGAAGTTTTTTGGTTTGTTTGTGAAGTTTCTTCTTTTGATTGGTTCATGGTGTGTTTCCTTTTTTCCAAAGTTTGAACCTTTTTTGGTTTGTTTGGAGTTCTTTCTGATTATCACTTCATGTGTATGTTCCTTTTTGCAAATTTTGAATCTTTTTTGGATTGTTTGGAGTTTTTTCTGATGATCACTTCATGTGTATCTTCCTTTTTGCAAATGTTGAATCTTTTTTGGGTTGTTTGAGGAGTTAGTTTTTTTCTGATGATTAATACATGAGTATAGGTGTGAGAGGTTTGATGTGAATGGTTTCAGGAGAGGACGAGGTCAACCGAAGAAAGTATTGTGGGAGGAGAGGTGATTAGACATGATATGACACAGTTTCAACTTATCAAGTACCTGATTTTATTAGATGGGAGGTTGTGGATGACATGGATTAGGATAGAAGCTTAGTAGGTAATAGTGCATTGTCTCACTATCTGTCCATACTATAGTTATACTGTTGCTTATGTGGTTTCTTGCCTTCGATTTCTGATTACTTTGGCTGTTTCTTGTTCTTCATTATCATATTATTTATTGTAGTAACTTCTTAGTAGGCTTTGCTATGCTTTCGCTTCCTTTACTTCTTTTGGAATGCTTTGGACCATTTTTTTCTGGAGTTGAGGGTATATCAGAAATAACCTCTCTACTCATGATGTAGGGGTAAGGTTTACGTACACTTTACCCTCGATAGGCTCCACTTTGTGGTACTATACTAGGTATGTTGTCGTAGTTCATTTTCTATTTGTGTTCTTCCGGTTATTTTTAGTTGTTTATAGAATTTCTTTTATGACTAATTCATGGGTATGTTTCTTTTCGCATCATTTTAAACATGTTTTGGGTTGTTTTCTGAATTCCCCCTTTATGGTTATTTTGAGCAGCAAAGTGAACTAGTTAGGATTGAGTGAGAGATGCTATGATTTAGTTAATTGGGACATTCGGGTATGTTTAGCAGAACCTCTGTTGTGATCCCTTTGGTTACTAGTTCTCAAGTAAATTGTAACGAGTTCAAGGGCGGATTTTGTCTTTAGGCAGCAAGTGTCACTGGAATCACTTTTGTTGACTTGAACTGTATCTTTAGTTGAACAATTTTAAAGAAATACTCCCTCCTTTCAATTTGTTTGTCCTACTTTCCTTTTAAGTCCATTTCAAAAAGATTTTCTTTTTCCTTTTTTAACATCTCTTTGTTTCCAACTTTCCACTTGGCATGTTCACAAGATTAAAGGGCATTCAATACATTTGACATATCCTTAATGTAAGACCACAAGATTCACAAGTATACTTTACTTTCTTAACTCTGCCAAGTTACAATAGCACAAACAGATTGAAATGGAAGGAGTATATGTTTATAGTTTATACTGAACTTCACTGCCACTGATGTAGATTGGGTGGAGCTTAAAATAAACAGGAAGGATAGGGGAATATGTAGTATTGGTGATCAAAAATCTAGAATGCAGACCCAAGCATTAGGGGCTTGAATCTTTGCTGTAATCAATTAAATTATCCGAACTCCAGAAGAATTAGAGAAGTAGTAATAACAGAACCCAGGTAAGAATTCAATACCGAATTGATGGAAGCAAGTAATGAAGATTCTTGCTTAGACTTGGCTATAGCATCGAAGAAGTATTGACCAGATGAACACAGTTCACCTCAATTGTTCAGCTGTTGCTTAAAAGGATTTCCAGTTGTTAATATACCTGCGCTGGTTACATTAGCATCTCAAGCTTCTCTTGGTGGCGACTATGAAATGGTTTTGATTAGATAGGATAACATCCACTAAGCGAGCCGTTCTTCATTTGTTTTTTTCTTCAAATTTTGAGCCTGTAACAAGTTAATTACTTCAGACATCGTTCCAAGATTCAGACATCGTTCCAAGCTAATCTTCCATGAGTTCATAGGCCTATAGTAGCATTCTTTGGCTCCTAGCTCTCTTGTATTAAAACCTTCTCATGGAAACGTTCTGCCTCTCTGAAATTCACATCAGCCGCAAAATAGTAATGGGCCCAGCAGTAACTTGCACCTGTTGATAAAATTAACCCGGTTTAGAGATTGCTTAAAGAGAAAAATTATATATTTCTAGATGCGAACGTTTTAAAGACAGTCATGTTGTGTGCAATCTCGTCAAGGGAACATAGGAAGTTGCAGGAATGTGCATCTCTTCAACTAAAACTGAACATACAGATTCTCTGATTGGAGAAATGATCCTTAAGGAGAAGATCTTATGAATATTGGCTCAGGGAGTGTTAATGAGACAATTTAGCAAGAGGGGAACCGAAAAATATAATACATTAGGACATCTAGTTTAATGGATCAGAATCATGCCCAAGGGCTGACGAACCCATTGAAGAATTTTTGTGATTCTGCTCGCGAAGTTCATTTATTCACCTTATTAAGAGTTGGTGATTCTCTGAAGCTGCTGCGCAATGCACTTCTTCAAGCAAGGTGTGATGCAGGAATTGTCAGAAAGATCTTGAAATCATCTTTTTCTCCAGCATGGCATAAGATAGTATAGAACATGAAAGGTTATATGCTTCCGACGCCACCAGTTGTCTAAATTTTGTTTCCACAATGCTGGTACTGTGTAAACCATGTTGCCCGGATTCTTAAAAAATGTCAATGGGTGCGTGTCGGATTCTCCAAAAGTAGTGTGTTTTTGGAGAACCCGACATGGCCGAAAGTGAAGAGTCCACGCAACTTATTGTAAACCCCGCCCCCTCCATTTTTTCCTGTTTGATTTGATTCCACAGTGTAAAACAGAGAAAAACTAGGGCACATATATTGTTTTTGCCCCCCAAGACTGTTATTGGAGAGATTTGCTTACAAGATGGAGGGAGTTCTATTCTTAATGGAGACTAATATGCTTGTATCTCAGTCTTTCTTGTTGATTGTTATGGACACTAGCCGCATGCTCATGACATAGAGAATTCTCGTGAAAGGTCTGCGTGATTGCAGTATATTTGGCCTGTAATTTGCTCAGCTTAAGGTAGGGAAGCAATAGCTCAAATTCTACATCTAAATCCTTAGCTAAACTAAGGAATCAAGCACCCAATCCCTAGTAACCTCTTGATATTCGAGGTTGTTGGGACAGATATCTAGCTTTAGTGGAGTTATCTGGCAAGTATAGGCGGATAAATGAAGGGCATAAAAAACACCTGTACACAACAAGTGTACCAAAAGTAGAAACCTTACAGAAAGATGTATTTTTCTATTTTTCTACAGAAGTCGCCCAATCTCTTATTCTAGTAGGAATCTCGTGGGTGTTTCTTTGTTTGGTCCGCGCATATATGGAAGTCTTATTATCTGAGTCGAGAGTTGCCTAAACATGGAAGTTATAGTGATATACAGTTATTCACTGTTTTTCTCTGTATACCTTGCACTAATGATCAATCTGTCACTCCGCCCATGACTTAATCAGTCCAGTCTGAGTGCTGGAAATGTTCTTACCTTTTTGTTTGTGTGCTCATACATGCGGGGTATATGGCTTTAGGAGTAGTATTGACCTTAACAGTTCACCCAGCAAGGTGTTTATTGTATGATGGCATTTTGGGATTATTTGAGCTGTAGGTTCGGTTTCACAGATTCTTTTTTCTCCTTTTGCGTTGGCACACCGTGTCGACGGATGAAATGAGGGTGTGATACTTTGTGCAGATTCTTCAATAGTAGACCAAGAATTAGCAAAATTGTGGCACACCGATGACAACAATACCCGTACCTGATGTGAACCTGTAAACAAATTGTGTAACATAGATTGTAGGGTCACTCGTTGATGTATTCTAGCACTAGGGCCTCTGTTGAACCGCAAAATGCTCCCTCCCTCTGCCATAAATTTGCACAAGATCGAAAGGCCCTCAAGCACCAGCCATAGGGAGTATGAGGAACTGATCTTCTTCCAGTTCTGGATAAATAATTGTGCCCTTTATTTTAGATTCTTAACTTTTCCTGATGTAATATGTATTATCCTTTTAATATATGATCTAATGATGACACACTACCTTGACATTTATTACATGCAAAATTAAGTAGATATGGCTAGTAGAATTCAGATCCCACGGTTTAATCATCATCTGTTTGAAGCAAGTTTCTGCATAACGGGGTTCAAATGCTTTTAATTTCTTGCAGGATTCTCTCTATTCCTCGGACTGATGATTGACAGGCTACACCATTACATAAGGGAGCTTCGATTACTAAGGAAGACCATGGAGGCTGTGAAGAAGCAGGATCGTACATTGGACAACATCAAGAACGGCGAGGCCAGTACCTTAAGGGATGAAATCTCCTCCTTGAGGAACAGGATGAAGCAGCTGGAATCAGAATCGGAGGCAAAAGAAAAGGAGGTGCAATCTCAGAGAGCAAATTCTGATTCTCTCAAGGGTCAATCTGAAAAATTGCTGCTTG</genome_strand>
        <mrna_strand>ATGTTACCTCAAGTGCAGCTTTTGTTCATGGTGGTGTTCTTGGAAATGGGGTTGATTTTGATGTTTCTGTTCAGAACCCCTTTGAGGAAACTGATAATTATGAGTCTTGATCGTGTTAAAAGAGGCAGTGGACCGTTGATTGTTAAATCTGTAGCAGCTACTGTTCTTGTGATCATGATTTATACTGTTTATTCTATTAAGGAATTGCAGTCTCGGCCTGCTGATTCTGTGAATCCTACCGATCAAATCCTTCTTGCTCATCAGATTCTTGAAGCTGCTCTTATGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCTCTCTATTCCTCGGACTGATGATTGACAGGCTACACCATTACATAAGGGAGCTTCGATTACTAAGGAAGACCATGGAGGCTGTGAAGAAGCAGGATCGTACATTGGACAACATCAAGAACGGCGAGGCCAGTACCTTAAGGGATGAAATCTCCTCCTTGAGGAACAGGATGAAGCAGCTGGAATCAGAATCGGAGGCAAAAGAAAAGGAGGTGCAATCTCAGAGAGCAAATTCTGATTCTCTCAAGGGTCAATCTGAAAAATTGCTGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476840" ref_strand="+" ref_description="SGN-E476840 [cSTB-46-I7]">
      <seq>gttaatttggtggtgtattcaaaatgttagctcaagttcagcttttgttcatggtggtgttcttggaaatggggttgattttgatgtttctgtttagaacccctttgaggaaactgataattatgactcttgatcgtgttaaaagaggcagtggaccgttgattgttaaatctgtagcagctactgctcttgtgatcatgatttatactgactattctattaaggaatcgcagcctcttcctgctgattctgcgaatcctactgatcaaattcttcttgctcatcaaattcttgaagctgctcttatgggattctctctattccttggactgatgatcgacaggctacaccattacataagggagcttcgattactaaggaggaccatggaggctgtgaagaagcacgatcgcacattggacaacatcaagaatggcgaggccagtaccttaatggatgaaatctactccttgacgaacaagatgaagcagctggaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0090D09.1" temp_strand="-" temp_description="C12HBa0090D09.1  AC212766.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0090D09 upload_account_name:italy">
        <position start="10470" stop="5206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10170" g_stop="9862" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9861" i_stop="5696" i_length="4166">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5695" g_stop="5506" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="499" r_length="190" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0090D09.1" gen_strand="-" ref_id="SGN-E476840" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0090D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E476840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10170" e_stop="9862"/>
          <exon e_start="5695" e_stop="5506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATTTGGTGGTGTATTCAAAATGTTACCTCAAGTGCAGCTTTTGTTCATGGTGGTGTTCTTGGAAATGGGGTTGATTTTGATGTTTCTGTTCAGAACCCCTTTGAGGAAACTGATAATTATGAGTCTTGATCGTGTTAAAAGAGGCAGTGGACCGTTGATTGTTAAATCTGTAGCAGCTACTGTTCTTGTGATCATGATTTATACTGTTTATTCTATTAAGGAATTGCAGTCTCGGCCTGCTGATTCTGTGAATCCTACCGATCAAATCCTTCTTGCTCATCAGATTCTTGAAGCTGCTCTTATGGGTATGTTTCTTTTTTTTGAAGTTTTTTGGTTTGTTTGTGAAGTTTCTTCTTTTGATTGGTTCATGGTGTGTTTCCTTTTTTCCAAAGTTTGAACCTTTTTTGGTTTGTTTGGAGTTCTTTCTGATTATCACTTCATGTGTATGTTCCTTTTTGCAAATTTTGAATCTTTTTTGGATTGTTTGGAGTTTTTTCTGATGATCACTTCATGTGTATCTTCCTTTTTGCAAATGTTGAATCTTTTTTGGGTTGTTTGAGGAGTTAGTTTTTTTCTGATGATTAATACATGAGTATAGGTGTGAGAGGTTTGATGTGAATGGTTTCAGGAGAGGACGAGGTCAACCGAAGAAAGTATTGTGGGAGGAGAGGTGATTAGACATGATATGACACAGTTTCAACTTATCAAGTACCTGATTTTATTAGATGGGAGGTTGTGGATGACATGGATTAGGATAGAAGCTTAGTAGGTAATAGTGCATTGTCTCACTATCTGTCCATACTATAGTTATACTGTTGCTTATGTGGTTTCTTGCCTTCGATTTCTGATTACTTTGGCTGTTTCTTGTTCTTCATTATCATATTATTTATTGTAGTAACTTCTTAGTAGGCTTTGCTATGCTTTCGCTTCCTTTACTTCTTTTGGAATGCTTTGGACCATTTTTTTCTGGAGTTGAGGGTATATCAGAAATAACCTCTCTACTCATGATGTAGGGGTAAGGTTTACGTACACTTTACCCTCGATAGGCTCCACTTTGTGGTACTATACTAGGTATGTTGTCGTAGTTCATTTTCTATTTGTGTTCTTCCGGTTATTTTTAGTTGTTTATAGAATTTCTTTTATGACTAATTCATGGGTATGTTTCTTTTCGCATCATTTTAAACATGTTTTGGGTTGTTTTCTGAATTCCCCCTTTATGGTTATTTTGAGCAGCAAAGTGAACTAGTTAGGATTGAGTGAGAGATGCTATGATTTAGTTAATTGGGACATTCGGGTATGTTTAGCAGAACCTCTGTTGTGATCCCTTTGGTTACTAGTTCTCAAGTAAATTGTAACGAGTTCAAGGGCGGATTTTGTCTTTAGGCAGCAAGTGTCACTGGAATCACTTTTGTTGACTTGAACTGTATCTTTAGTTGAACAATTTTAAAGAAATACTCCCTCCTTTCAATTTGTTTGTCCTACTTTCCTTTTAAGTCCATTTCAAAAAGATTTTCTTTTTCCTTTTTTAACATCTCTTTGTTTCCAACTTTCCACTTGGCATGTTCACAAGATTAAAGGGCATTCAATACATTTGACATATCCTTAATGTAAGACCACAAGATTCACAAGTATACTTTACTTTCTTAACTCTGCCAAGTTACAATAGCACAAACAGATTGAAATGGAAGGAGTATATGTTTATAGTTTATACTGAACTTCACTGCCACTGATGTAGATTGGGTGGAGCTTAAAATAAACAGGAAGGATAGGGGAATATGTAGTATTGGTGATCAAAAATCTAGAATGCAGACCCAAGCATTAGGGGCTTGAATCTTTGCTGTAATCAATTAAATTATCCGAACTCCAGAAGAATTAGAGAAGTAGTAATAACAGAACCCAGGTAAGAATTCAATACCGAATTGATGGAAGCAAGTAATGAAGATTCTTGCTTAGACTTGGCTATAGCATCGAAGAAGTATTGACCAGATGAACACAGTTCACCTCAATTGTTCAGCTGTTGCTTAAAAGGATTTCCAGTTGTTAATATACCTGCGCTGGTTACATTAGCATCTCAAGCTTCTCTTGGTGGCGACTATGAAATGGTTTTGATTAGATAGGATAACATCCACTAAGCGAGCCGTTCTTCATTTGTTTTTTTCTTCAAATTTTGAGCCTGTAACAAGTTAATTACTTCAGACATCGTTCCAAGATTCAGACATCGTTCCAAGCTAATCTTCCATGAGTTCATAGGCCTATAGTAGCATTCTTTGGCTCCTAGCTCTCTTGTATTAAAACCTTCTCATGGAAACGTTCTGCCTCTCTGAAATTCACATCAGCCGCAAAATAGTAATGGGCCCAGCAGTAACTTGCACCTGTTGATAAAATTAACCCGGTTTAGAGATTGCTTAAAGAGAAAAATTATATATTTCTAGATGCGAACGTTTTAAAGACAGTCATGTTGTGTGCAATCTCGTCAAGGGAACATAGGAAGTTGCAGGAATGTGCATCTCTTCAACTAAAACTGAACATACAGATTCTCTGATTGGAGAAATGATCCTTAAGGAGAAGATCTTATGAATATTGGCTCAGGGAGTGTTAATGAGACAATTTAGCAAGAGGGGAACCGAAAAATATAATACATTAGGACATCTAGTTTAATGGATCAGAATCATGCCCAAGGGCTGACGAACCCATTGAAGAATTTTTGTGATTCTGCTCGCGAAGTTCATTTATTCACCTTATTAAGAGTTGGTGATTCTCTGAAGCTGCTGCGCAATGCACTTCTTCAAGCAAGGTGTGATGCAGGAATTGTCAGAAAGATCTTGAAATCATCTTTTTCTCCAGCATGGCATAAGATAGTATAGAACATGAAAGGTTATATGCTTCCGACGCCACCAGTTGTCTAAATTTTGTTTCCACAATGCTGGTACTGTGTAAACCATGTTGCCCGGATTCTTAAAAAATGTCAATGGGTGCGTGTCGGATTCTCCAAAAGTAGTGTGTTTTTGGAGAACCCGACATGGCCGAAAGTGAAGAGTCCACGCAACTTATTGTAAACCCCGCCCCCTCCATTTTTTCCTGTTTGATTTGATTCCACAGTGTAAAACAGAGAAAAACTAGGGCACATATATTGTTTTTGCCCCCCAAGACTGTTATTGGAGAGATTTGCTTACAAGATGGAGGGAGTTCTATTCTTAATGGAGACTAATATGCTTGTATCTCAGTCTTTCTTGTTGATTGTTATGGACACTAGCCGCATGCTCATGACATAGAGAATTCTCGTGAAAGGTCTGCGTGATTGCAGTATATTTGGCCTGTAATTTGCTCAGCTTAAGGTAGGGAAGCAATAGCTCAAATTCTACATCTAAATCCTTAGCTAAACTAAGGAATCAAGCACCCAATCCCTAGTAACCTCTTGATATTCGAGGTTGTTGGGACAGATATCTAGCTTTAGTGGAGTTATCTGGCAAGTATAGGCGGATAAATGAAGGGCATAAAAAACACCTGTACACAACAAGTGTACCAAAAGTAGAAACCTTACAGAAAGATGTATTTTTCTATTTTTCTACAGAAGTCGCCCAATCTCTTATTCTAGTAGGAATCTCGTGGGTGTTTCTTTGTTTGGTCCGCGCATATATGGAAGTCTTATTATCTGAGTCGAGAGTTGCCTAAACATGGAAGTTATAGTGATATACAGTTATTCACTGTTTTTCTCTGTATACCTTGCACTAATGATCAATCTGTCACTCCGCCCATGACTTAATCAGTCCAGTCTGAGTGCTGGAAATGTTCTTACCTTTTTGTTTGTGTGCTCATACATGCGGGGTATATGGCTTTAGGAGTAGTATTGACCTTAACAGTTCACCCAGCAAGGTGTTTATTGTATGATGGCATTTTGGGATTATTTGAGCTGTAGGTTCGGTTTCACAGATTCTTTTTTCTCCTTTTGCGTTGGCACACCGTGTCGACGGATGAAATGAGGGTGTGATACTTTGTGCAGATTCTTCAATAGTAGACCAAGAATTAGCAAAATTGTGGCACACCGATGACAACAATACCCGTACCTGATGTGAACCTGTAAACAAATTGTGTAACATAGATTGTAGGGTCACTCGTTGATGTATTCTAGCACTAGGGCCTCTGTTGAACCGCAAAATGCTCCCTCCCTCTGCCATAAATTTGCACAAGATCGAAAGGCCCTCAAGCACCAGCCATAGGGAGTATGAGGAACTGATCTTCTTCCAGTTCTGGATAAATAATTGTGCCCTTTATTTTAGATTCTTAACTTTTCCTGATGTAATATGTATTATCCTTTTAATATATGATCTAATGATGACACACTACCTTGACATTTATTACATGCAAAATTAAGTAGATATGGCTAGTAGAATTCAGATCCCACGGTTTAATCATCATCTGTTTGAAGCAAGTTTCTGCATAACGGGGTTCAAATGCTTTTAATTTCTTGCAGGATTCTCTCTATTCCTCGGACTGATGATTGACAGGCTACACCATTACATAAGGGAGCTTCGATTACTAAGGAAGACCATGGAGGCTGTGAAGAAGCAGGATCGTACATTGGACAACATCAAGAACGGCGAGGCCAGTACCTTAAGGGATGAAATCTCCTCCTTGAGGAACAGGATGAAGCAGCTGGAATC</genome_strand>
        <mrna_strand>GTTAATTTGGTGGTGTATTCAAAATGTTAGCTCAAGTTCAGCTTTTGTTCATGGTGGTGTTCTTGGAAATGGGGTTGATTTTGATGTTTCTGTTTAGAACCCCTTTGAGGAAACTGATAATTATGACTCTTGATCGTGTTAAAAGAGGCAGTGGACCGTTGATTGTTAAATCTGTAGCAGCTACTGCTCTTGTGATCATGATTTATACTGACTATTCTATTAAGGAATCGCAGCCTCTTCCTGCTGATTCTGCGAATCCTACTGATCAAATTCTTCTTGCTCATCAAATTCTTGAAGCTGCTCTTATGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCTCTCTATTCCTTGGACTGATGATCGACAGGCTACACCATTACATAAGGGAGCTTCGATTACTAAGGAGGACCATGGAGGCTGTGAAGAAGCACGATCGCACATTGGACAACATCAAGAATGGCGAGGCCAGTACCTTAATGGATGAAATCTACTCCTTGACGAACAAGATGAAGCAGCTGGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703781" ref_strand="+" ref_description="SGN-E703781 [FA22BG11]">
      <seq>gcaaggcgtaaaggccgcgtgtatacacagaatcaacaccatctgtacactgtattcacagttttttctggaaaaaatcaacacccttttcaccaaaaatcaaactttattgtacaaaaatccttcttaactagttaagaagagccccttttggtgaaattgttgaatcacagaaaaaaaaaaaaagcagttgatttgggggggtattcaaaatgttacctcaagggcaccttttgttcatgggggggttcttggaaatggggttgattttgatgtttctgttcaaaacccctttgaggaaactgaaaattatgagtcttgatcgagttaaaaaaggcaggggaccgttgattgttaaatctgtaacagctactgttcttgggatcatgatttatactgtttattctattaaggaattgcagtctcggcctgctgattctgggaatcctaccgatcaaatccttcttgctcatcaaattcttgaagctgctcttatgggattctctctattcctcggactgatgattgacaggctaccccattacataagggagcttcgattactaaggaaaaccatggaggctgtgaaaaagcaggatcgtacattggacaacatcaaaaacggcgaggccagtaccttaagggatgaaatctcctccttgaggaacaggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0090D09.1" temp_strand="-" temp_description="C12HBa0090D09.1  AC212766.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0090D09 upload_account_name:italy">
        <position start="10655" stop="5220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10355" g_stop="9862" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9861" i_stop="5696" i_length="4166">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5695" g_stop="5520" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="674" r_length="176" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0090D09.1" gen_strand="-" ref_id="SGN-E703781" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0090D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10355" e_stop="9862"/>
          <exon e_start="5695" e_stop="5520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAGGCGTAAAGGCCGCGTGTATACACAGAATCAACACCATCTGTACACTGTATTCACAGTTTTTTCTGAAAAAAATCAACACCCTTTTCACCAAAAATCAAACTTTATTGTACAAAAATCCTTCTTAACTAGTTAAGAAGAGCCCCTTTTGGTGAAATTGTTGAATCACAG----AAAAAAAAAGCAGTTGATTTGGTGGTGTATTCAAAATGTTACCTCAAGTGCAGCTTTTGTTCATGGTGGTGTTCTTGGAAATGGGGTTGATTTTGATGTTTCTGTTCAGAACCCCTTTGAGGAAACTGATAATTATGAGTCTTGATCGTGTTAAAAGAGGCAGTGGACCGTTGATTGTTAAATCTGTAGCAGCTACTGTTCTTGTGATCATGATTTATACTGTTTATTCTATTAAGGAATTGCAGTCTCGGCCTGCTGATTCTGTGAATCCTACCGATCAAATCCTTCTTGCTCATCAGATTCTTGAAGCTGCTCTTATGGGTATGTTTCTTTTTTTTGAAGTTTTTTGGTTTGTTTGTGAAGTTTCTTCTTTTGATTGGTTCATGGTGTGTTTCCTTTTTTCCAAAGTTTGAACCTTTTTTGGTTTGTTTGGAGTTCTTTCTGATTATCACTTCATGTGTATGTTCCTTTTTGCAAATTTTGAATCTTTTTTGGATTGTTTGGAGTTTTTTCTGATGATCACTTCATGTGTATCTTCCTTTTTGCAAATGTTGAATCTTTTTTGGGTTGTTTGAGGAGTTAGTTTTTTTCTGATGATTAATACATGAGTATAGGTGTGAGAGGTTTGATGTGAATGGTTTCAGGAGAGGACGAGGTCAACCGAAGAAAGTATTGTGGGAGGAGAGGTGATTAGACATGATATGACACAGTTTCAACTTATCAAGTACCTGATTTTATTAGATGGGAGGTTGTGGATGACATGGATTAGGATAGAAGCTTAGTAGGTAATAGTGCATTGTCTCACTATCTGTCCATACTATAGTTATACTGTTGCTTATGTGGTTTCTTGCCTTCGATTTCTGATTACTTTGGCTGTTTCTTGTTCTTCATTATCATATTATTTATTGTAGTAACTTCTTAGTAGGCTTTGCTATGCTTTCGCTTCCTTTACTTCTTTTGGAATGCTTTGGACCATTTTTTTCTGGAGTTGAGGGTATATCAGAAATAACCTCTCTACTCATGATGTAGGGGTAAGGTTTACGTACACTTTACCCTCGATAGGCTCCACTTTGTGGTACTATACTAGGTATGTTGTCGTAGTTCATTTTCTATTTGTGTTCTTCCGGTTATTTTTAGTTGTTTATAGAATTTCTTTTATGACTAATTCATGGGTATGTTTCTTTTCGCATCATTTTAAACATGTTTTGGGTTGTTTTCTGAATTCCCCCTTTATGGTTATTTTGAGCAGCAAAGTGAACTAGTTAGGATTGAGTGAGAGATGCTATGATTTAGTTAATTGGGACATTCGGGTATGTTTAGCAGAACCTCTGTTGTGATCCCTTTGGTTACTAGTTCTCAAGTAAATTGTAACGAGTTCAAGGGCGGATTTTGTCTTTAGGCAGCAAGTGTCACTGGAATCACTTTTGTTGACTTGAACTGTATCTTTAGTTGAACAATTTTAAAGAAATACTCCCTCCTTTCAATTTGTTTGTCCTACTTTCCTTTTAAGTCCATTTCAAAAAGATTTTCTTTTTCCTTTTTTAACATCTCTTTGTTTCCAACTTTCCACTTGGCATGTTCACAAGATTAAAGGGCATTCAATACATTTGACATATCCTTAATGTAAGACCACAAGATTCACAAGTATACTTTACTTTCTTAACTCTGCCAAGTTACAATAGCACAAACAGATTGAAATGGAAGGAGTATATGTTTATAGTTTATACTGAACTTCACTGCCACTGATGTAGATTGGGTGGAGCTTAAAATAAACAGGAAGGATAGGGGAATATGTAGTATTGGTGATCAAAAATCTAGAATGCAGACCCAAGCATTAGGGGCTTGAATCTTTGCTGTAATCAATTAAATTATCCGAACTCCAGAAGAATTAGAGAAGTAGTAATAACAGAACCCAGGTAAGAATTCAATACCGAATTGATGGAAGCAAGTAATGAAGATTCTTGCTTAGACTTGGCTATAGCATCGAAGAAGTATTGACCAGATGAACACAGTTCACCTCAATTGTTCAGCTGTTGCTTAAAAGGATTTCCAGTTGTTAATATACCTGCGCTGGTTACATTAGCATCTCAAGCTTCTCTTGGTGGCGACTATGAAATGGTTTTGATTAGATAGGATAACATCCACTAAGCGAGCCGTTCTTCATTTGTTTTTTTCTTCAAATTTTGAGCCTGTAACAAGTTAATTACTTCAGACATCGTTCCAAGATTCAGACATCGTTCCAAGCTAATCTTCCATGAGTTCATAGGCCTATAGTAGCATTCTTTGGCTCCTAGCTCTCTTGTATTAAAACCTTCTCATGGAAACGTTCTGCCTCTCTGAAATTCACATCAGCCGCAAAATAGTAATGGGCCCAGCAGTAACTTGCACCTGTTGATAAAATTAACCCGGTTTAGAGATTGCTTAAAGAGAAAAATTATATATTTCTAGATGCGAACGTTTTAAAGACAGTCATGTTGTGTGCAATCTCGTCAAGGGAACATAGGAAGTTGCAGGAATGTGCATCTCTTCAACTAAAACTGAACATACAGATTCTCTGATTGGAGAAATGATCCTTAAGGAGAAGATCTTATGAATATTGGCTCAGGGAGTGTTAATGAGACAATTTAGCAAGAGGGGAACCGAAAAATATAATACATTAGGACATCTAGTTTAATGGATCAGAATCATGCCCAAGGGCTGACGAACCCATTGAAGAATTTTTGTGATTCTGCTCGCGAAGTTCATTTATTCACCTTATTAAGAGTTGGTGATTCTCTGAAGCTGCTGCGCAATGCACTTCTTCAAGCAAGGTGTGATGCAGGAATTGTCAGAAAGATCTTGAAATCATCTTTTTCTCCAGCATGGCATAAGATAGTATAGAACATGAAAGGTTATATGCTTCCGACGCCACCAGTTGTCTAAATTTTGTTTCCACAATGCTGGTACTGTGTAAACCATGTTGCCCGGATTCTTAAAAAATGTCAATGGGTGCGTGTCGGATTCTCCAAAAGTAGTGTGTTTTTGGAGAACCCGACATGGCCGAAAGTGAAGAGTCCACGCAACTTATTGTAAACCCCGCCCCCTCCATTTTTTCCTGTTTGATTTGATTCCACAGTGTAAAACAGAGAAAAACTAGGGCACATATATTGTTTTTGCCCCCCAAGACTGTTATTGGAGAGATTTGCTTACAAGATGGAGGGAGTTCTATTCTTAATGGAGACTAATATGCTTGTATCTCAGTCTTTCTTGTTGATTGTTATGGACACTAGCCGCATGCTCATGACATAGAGAATTCTCGTGAAAGGTCTGCGTGATTGCAGTATATTTGGCCTGTAATTTGCTCAGCTTAAGGTAGGGAAGCAATAGCTCAAATTCTACATCTAAATCCTTAGCTAAACTAAGGAATCAAGCACCCAATCCCTAGTAACCTCTTGATATTCGAGGTTGTTGGGACAGATATCTAGCTTTAGTGGAGTTATCTGGCAAGTATAGGCGGATAAATGAAGGGCATAAAAAACACCTGTACACAACAAGTGTACCAAAAGTAGAAACCTTACAGAAAGATGTATTTTTCTATTTTTCTACAGAAGTCGCCCAATCTCTTATTCTAGTAGGAATCTCGTGGGTGTTTCTTTGTTTGGTCCGCGCATATATGGAAGTCTTATTATCTGAGTCGAGAGTTGCCTAAACATGGAAGTTATAGTGATATACAGTTATTCACTGTTTTTCTCTGTATACCTTGCACTAATGATCAATCTGTCACTCCGCCCATGACTTAATCAGTCCAGTCTGAGTGCTGGAAATGTTCTTACCTTTTTGTTTGTGTGCTCATACATGCGGGGTATATGGCTTTAGGAGTAGTATTGACCTTAACAGTTCACCCAGCAAGGTGTTTATTGTATGATGGCATTTTGGGATTATTTGAGCTGTAGGTTCGGTTTCACAGATTCTTTTTTCTCCTTTTGCGTTGGCACACCGTGTCGACGGATGAAATGAGGGTGTGATACTTTGTGCAGATTCTTCAATAGTAGACCAAGAATTAGCAAAATTGTGGCACACCGATGACAACAATACCCGTACCTGATGTGAACCTGTAAACAAATTGTGTAACATAGATTGTAGGGTCACTCGTTGATGTATTCTAGCACTAGGGCCTCTGTTGAACCGCAAAATGCTCCCTCCCTCTGCCATAAATTTGCACAAGATCGAAAGGCCCTCAAGCACCAGCCATAGGGAGTATGAGGAACTGATCTTCTTCCAGTTCTGGATAAATAATTGTGCCCTTTATTTTAGATTCTTAACTTTTCCTGATGTAATATGTATTATCCTTTTAATATATGATCTAATGATGACACACTACCTTGACATTTATTACATGCAAAATTAAGTAGATATGGCTAGTAGAATTCAGATCCCACGGTTTAATCATCATCTGTTTGAAGCAAGTTTCTGCATAACGGGGTTCAAATGCTTTTAATTTCTTGCAGGATTCTCTCTATTCCTCGGACTGATGATTGACAGGCTACACCATTACATAAGGGAGCTTCGATTACTAAGGAAGACCATGGAGGCTGTGAAGAAGCAGGATCGTACATTGGACAACATCAAGAACGGCGAGGCCAGTACCTTAAGGGATGAAATCTCCTCCTTGAGGAACAGGATG</genome_strand>
        <mrna_strand>GCAAGGCGTAAAGGCCGCGTGTATACACAGAATCAACACCATCTGTACACTGTATTCACAGTTTTTTCTGGAAAAAATCAACACCCTTTTCACCAAAAATCAAACTTTATTGTACAAAAATCCTTCTTAACTAGTTAAGAAGAGCCCCTTTTGGTGAAATTGTTGAATCACAGAAAAAAAAAAAAAGCAGTTGATTTGGGGGGGTATTCAAAATGTTACCTCAAGGGCACCTTTTGTTCATGGGGGGGTTCTTGGAAATGGGGTTGATTTTGATGTTTCTGTTCAAAACCCCTTTGAGGAAACTGAAAATTATGAGTCTTGATCGAGTTAAAAAAGGCAGGGGACCGTTGATTGTTAAATCTGTAACAGCTACTGTTCTTGGGATCATGATTTATACTGTTTATTCTATTAAGGAATTGCAGTCTCGGCCTGCTGATTCTGGGAATCCTACCGATCAAATCCTTCTTGCTCATCAAATTCTTGAAGCTGCTCTTATGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCTCTCTATTCCTCGGACTGATGATTGACAGGCTACCCCATTACATAAGGGAGCTTCGATTACTAAGGAAAACCATGGAGGCTGTGAAAAAGCAGGATCGTACATTGGACAACATCAAAAACGGCGAGGCCAGTACCTTAAGGGATGAAATCTCCTCCTTGAGGAACAGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336784" ref_strand="+" ref_description="SGN-E336784 [cTOE-5-M3]">
      <seq>caagtcttctgccaggcgtaaaggccgcgtgtatacacagaatcaacaccatctgtacactgtattcacagttttttctgaaaaaaatcaacacccttttcaccaaaaatcaaactttattgtacaaaaatccttcttaactagttaagaagagccccttttggtgaaattgttgaatcacagaaaaaaaaagcagttgatttggtggtgtattcaaaatgttacctcaagtgcagcttttgttcatggtggtgttcttggaaatggggttgattttgatgtttctgttcagaacccctttgaggaaactgataattatgagtcttgatcgtgttaaaagaggcagtggaccgttgattgttaaatctgtagcagctactgttcttgtgatcatgatttatactgtttattctattaaggaattgcagtctcggcctgctgattctgtgaatcctaccgatcaaatccttcttgctcatcagattcttgaagctgctcttatgggattctctctattcctcggactgatgattgacaggctacaccattacataagggagcttcgattact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0090D09.1" temp_strand="-" temp_description="C12HBa0090D09.1  AC212766.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0090D09 upload_account_name:italy">
        <position start="10665" stop="5329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10365" g_stop="9862" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9861" i_stop="5696" i_length="4166">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5695" g_stop="5629" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="571" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0090D09.1" gen_strand="-" ref_id="SGN-E336784" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0090D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10365" e_stop="9862"/>
          <exon e_start="5695" e_stop="5629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTCTTCTGCCAGGCGTAAAGGCCGCGTGTATACACAGAATCAACACCATCTGTACACTGTATTCACAGTTTTTTCTGAAAAAAATCAACACCCTTTTCACCAAAAATCAAACTTTATTGTACAAAAATCCTTCTTAACTAGTTAAGAAGAGCCCCTTTTGGTGAAATTGTTGAATCACAGAAAAAAAAAGCAGTTGATTTGGTGGTGTATTCAAAATGTTACCTCAAGTGCAGCTTTTGTTCATGGTGGTGTTCTTGGAAATGGGGTTGATTTTGATGTTTCTGTTCAGAACCCCTTTGAGGAAACTGATAATTATGAGTCTTGATCGTGTTAAAAGAGGCAGTGGACCGTTGATTGTTAAATCTGTAGCAGCTACTGTTCTTGTGATCATGATTTATACTGTTTATTCTATTAAGGAATTGCAGTCTCGGCCTGCTGATTCTGTGAATCCTACCGATCAAATCCTTCTTGCTCATCAGATTCTTGAAGCTGCTCTTATGGGTATGTTTCTTTTTTTTGAAGTTTTTTGGTTTGTTTGTGAAGTTTCTTCTTTTGATTGGTTCATGGTGTGTTTCCTTTTTTCCAAAGTTTGAACCTTTTTTGGTTTGTTTGGAGTTCTTTCTGATTATCACTTCATGTGTATGTTCCTTTTTGCAAATTTTGAATCTTTTTTGGATTGTTTGGAGTTTTTTCTGATGATCACTTCATGTGTATCTTCCTTTTTGCAAATGTTGAATCTTTTTTGGGTTGTTTGAGGAGTTAGTTTTTTTCTGATGATTAATACATGAGTATAGGTGTGAGAGGTTTGATGTGAATGGTTTCAGGAGAGGACGAGGTCAACCGAAGAAAGTATTGTGGGAGGAGAGGTGATTAGACATGATATGACACAGTTTCAACTTATCAAGTACCTGATTTTATTAGATGGGAGGTTGTGGATGACATGGATTAGGATAGAAGCTTAGTAGGTAATAGTGCATTGTCTCACTATCTGTCCATACTATAGTTATACTGTTGCTTATGTGGTTTCTTGCCTTCGATTTCTGATTACTTTGGCTGTTTCTTGTTCTTCATTATCATATTATTTATTGTAGTAACTTCTTAGTAGGCTTTGCTATGCTTTCGCTTCCTTTACTTCTTTTGGAATGCTTTGGACCATTTTTTTCTGGAGTTGAGGGTATATCAGAAATAACCTCTCTACTCATGATGTAGGGGTAAGGTTTACGTACACTTTACCCTCGATAGGCTCCACTTTGTGGTACTATACTAGGTATGTTGTCGTAGTTCATTTTCTATTTGTGTTCTTCCGGTTATTTTTAGTTGTTTATAGAATTTCTTTTATGACTAATTCATGGGTATGTTTCTTTTCGCATCATTTTAAACATGTTTTGGGTTGTTTTCTGAATTCCCCCTTTATGGTTATTTTGAGCAGCAAAGTGAACTAGTTAGGATTGAGTGAGAGATGCTATGATTTAGTTAATTGGGACATTCGGGTATGTTTAGCAGAACCTCTGTTGTGATCCCTTTGGTTACTAGTTCTCAAGTAAATTGTAACGAGTTCAAGGGCGGATTTTGTCTTTAGGCAGCAAGTGTCACTGGAATCACTTTTGTTGACTTGAACTGTATCTTTAGTTGAACAATTTTAAAGAAATACTCCCTCCTTTCAATTTGTTTGTCCTACTTTCCTTTTAAGTCCATTTCAAAAAGATTTTCTTTTTCCTTTTTTAACATCTCTTTGTTTCCAACTTTCCACTTGGCATGTTCACAAGATTAAAGGGCATTCAATACATTTGACATATCCTTAATGTAAGACCACAAGATTCACAAGTATACTTTACTTTCTTAACTCTGCCAAGTTACAATAGCACAAACAGATTGAAATGGAAGGAGTATATGTTTATAGTTTATACTGAACTTCACTGCCACTGATGTAGATTGGGTGGAGCTTAAAATAAACAGGAAGGATAGGGGAATATGTAGTATTGGTGATCAAAAATCTAGAATGCAGACCCAAGCATTAGGGGCTTGAATCTTTGCTGTAATCAATTAAATTATCCGAACTCCAGAAGAATTAGAGAAGTAGTAATAACAGAACCCAGGTAAGAATTCAATACCGAATTGATGGAAGCAAGTAATGAAGATTCTTGCTTAGACTTGGCTATAGCATCGAAGAAGTATTGACCAGATGAACACAGTTCACCTCAATTGTTCAGCTGTTGCTTAAAAGGATTTCCAGTTGTTAATATACCTGCGCTGGTTACATTAGCATCTCAAGCTTCTCTTGGTGGCGACTATGAAATGGTTTTGATTAGATAGGATAACATCCACTAAGCGAGCCGTTCTTCATTTGTTTTTTTCTTCAAATTTTGAGCCTGTAACAAGTTAATTACTTCAGACATCGTTCCAAGATTCAGACATCGTTCCAAGCTAATCTTCCATGAGTTCATAGGCCTATAGTAGCATTCTTTGGCTCCTAGCTCTCTTGTATTAAAACCTTCTCATGGAAACGTTCTGCCTCTCTGAAATTCACATCAGCCGCAAAATAGTAATGGGCCCAGCAGTAACTTGCACCTGTTGATAAAATTAACCCGGTTTAGAGATTGCTTAAAGAGAAAAATTATATATTTCTAGATGCGAACGTTTTAAAGACAGTCATGTTGTGTGCAATCTCGTCAAGGGAACATAGGAAGTTGCAGGAATGTGCATCTCTTCAACTAAAACTGAACATACAGATTCTCTGATTGGAGAAATGATCCTTAAGGAGAAGATCTTATGAATATTGGCTCAGGGAGTGTTAATGAGACAATTTAGCAAGAGGGGAACCGAAAAATATAATACATTAGGACATCTAGTTTAATGGATCAGAATCATGCCCAAGGGCTGACGAACCCATTGAAGAATTTTTGTGATTCTGCTCGCGAAGTTCATTTATTCACCTTATTAAGAGTTGGTGATTCTCTGAAGCTGCTGCGCAATGCACTTCTTCAAGCAAGGTGTGATGCAGGAATTGTCAGAAAGATCTTGAAATCATCTTTTTCTCCAGCATGGCATAAGATAGTATAGAACATGAAAGGTTATATGCTTCCGACGCCACCAGTTGTCTAAATTTTGTTTCCACAATGCTGGTACTGTGTAAACCATGTTGCCCGGATTCTTAAAAAATGTCAATGGGTGCGTGTCGGATTCTCCAAAAGTAGTGTGTTTTTGGAGAACCCGACATGGCCGAAAGTGAAGAGTCCACGCAACTTATTGTAAACCCCGCCCCCTCCATTTTTTCCTGTTTGATTTGATTCCACAGTGTAAAACAGAGAAAAACTAGGGCACATATATTGTTTTTGCCCCCCAAGACTGTTATTGGAGAGATTTGCTTACAAGATGGAGGGAGTTCTATTCTTAATGGAGACTAATATGCTTGTATCTCAGTCTTTCTTGTTGATTGTTATGGACACTAGCCGCATGCTCATGACATAGAGAATTCTCGTGAAAGGTCTGCGTGATTGCAGTATATTTGGCCTGTAATTTGCTCAGCTTAAGGTAGGGAAGCAATAGCTCAAATTCTACATCTAAATCCTTAGCTAAACTAAGGAATCAAGCACCCAATCCCTAGTAACCTCTTGATATTCGAGGTTGTTGGGACAGATATCTAGCTTTAGTGGAGTTATCTGGCAAGTATAGGCGGATAAATGAAGGGCATAAAAAACACCTGTACACAACAAGTGTACCAAAAGTAGAAACCTTACAGAAAGATGTATTTTTCTATTTTTCTACAGAAGTCGCCCAATCTCTTATTCTAGTAGGAATCTCGTGGGTGTTTCTTTGTTTGGTCCGCGCATATATGGAAGTCTTATTATCTGAGTCGAGAGTTGCCTAAACATGGAAGTTATAGTGATATACAGTTATTCACTGTTTTTCTCTGTATACCTTGCACTAATGATCAATCTGTCACTCCGCCCATGACTTAATCAGTCCAGTCTGAGTGCTGGAAATGTTCTTACCTTTTTGTTTGTGTGCTCATACATGCGGGGTATATGGCTTTAGGAGTAGTATTGACCTTAACAGTTCACCCAGCAAGGTGTTTATTGTATGATGGCATTTTGGGATTATTTGAGCTGTAGGTTCGGTTTCACAGATTCTTTTTTCTCCTTTTGCGTTGGCACACCGTGTCGACGGATGAAATGAGGGTGTGATACTTTGTGCAGATTCTTCAATAGTAGACCAAGAATTAGCAAAATTGTGGCACACCGATGACAACAATACCCGTACCTGATGTGAACCTGTAAACAAATTGTGTAACATAGATTGTAGGGTCACTCGTTGATGTATTCTAGCACTAGGGCCTCTGTTGAACCGCAAAATGCTCCCTCCCTCTGCCATAAATTTGCACAAGATCGAAAGGCCCTCAAGCACCAGCCATAGGGAGTATGAGGAACTGATCTTCTTCCAGTTCTGGATAAATAATTGTGCCCTTTATTTTAGATTCTTAACTTTTCCTGATGTAATATGTATTATCCTTTTAATATATGATCTAATGATGACACACTACCTTGACATTTATTACATGCAAAATTAAGTAGATATGGCTAGTAGAATTCAGATCCCACGGTTTAATCATCATCTGTTTGAAGCAAGTTTCTGCATAACGGGGTTCAAATGCTTTTAATTTCTTGCAGGATTCTCTCTATTCCTCGGACTGATGATTGACAGGCTACACCATTACATAAGGGAGCTTCGATTACT</genome_strand>
        <mrna_strand>CAAGTCTTCTGCCAGGCGTAAAGGCCGCGTGTATACACAGAATCAACACCATCTGTACACTGTATTCACAGTTTTTTCTGAAAAAAATCAACACCCTTTTCACCAAAAATCAAACTTTATTGTACAAAAATCCTTCTTAACTAGTTAAGAAGAGCCCCTTTTGGTGAAATTGTTGAATCACAGAAAAAAAAAGCAGTTGATTTGGTGGTGTATTCAAAATGTTACCTCAAGTGCAGCTTTTGTTCATGGTGGTGTTCTTGGAAATGGGGTTGATTTTGATGTTTCTGTTCAGAACCCCTTTGAGGAAACTGATAATTATGAGTCTTGATCGTGTTAAAAGAGGCAGTGGACCGTTGATTGTTAAATCTGTAGCAGCTACTGTTCTTGTGATCATGATTTATACTGTTTATTCTATTAAGGAATTGCAGTCTCGGCCTGCTGATTCTGTGAATCCTACCGATCAAATCCTTCTTGCTCATCAGATTCTTGAAGCTGCTCTTATGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCTCTCTATTCCTCGGACTGATGATTGACAGGCTACACCATTACATAAGGGAGCTTCGATTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E583406" ref_strand="+" ref_description="SGN-E583406 [9227]">
      <seq>gtacactctattcaccgttttttctgaaaaaaatcaacacccttttccaccaataatcaaactttcttgtacaaaaatctttcttaaccagtaaagaaaaaccccttttggtgaaatttttgaatcacagaaaaaaaaaggagttaatttggtggtgtattcaaaatgttagctcaagttcagcttttgttcatggtggtgttcttggaaatggggttgattttgatgtttctgtttagaacccctttgaggaaactgataattatgactcttgatcgtgttaaaagaggcagtggaccgttgattgttaaatctgtagcagctactgttcttgtgatcatgatttatactgtttattctattaaggaattgcagtctcgtcctgctgattctgtaaatccgtactgatcaaatccttcttggtcatcaaattctttgaagctgctcttatggggattctctctattccttgggactgatgatcgacagggctacacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0090D09.1" temp_strand="-" temp_description="C12HBa0090D09.1  AC212766.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0090D09 upload_account_name:italy">
        <position start="10611" stop="5353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10311" g_stop="9862" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9861" i_stop="5696" i_length="4166">
            <donor d_prob="1.000" d_score="0.85"/>
            <acceptor a_prob="0.986" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5695" g_stop="5653" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="499" r_length="45" r_score="0.860"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0090D09.1" gen_strand="-" ref_id="SGN-E583406" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0090D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E583406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10311" e_stop="9862"/>
          <exon e_start="5695" e_stop="5653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACACTGTATTCACAGTTTTTTCTGAAAAAAATCAACACCCTTTT-CACCAAAAATCAAACTTTATTGTACAAAAATCCTTCTTAACTAGTTAAGAAGAGCCCCTTTTGGTGAAATTGTTGAATCACAGAAAAAAAAAGCAGTTGATTTGGTGGTGTATTCAAAATGTTACCTCAAGTGCAGCTTTTGTTCATGGTGGTGTTCTTGGAAATGGGGTTGATTTTGATGTTTCTGTTCAGAACCCCTTTGAGGAAACTGATAATTATGAGTCTTGATCGTGTTAAAAGAGGCAGTGGACCGTTGATTGTTAAATCTGTAGCAGCTACTGTTCTTGTGATCATGATTTATACTGTTTATTCTATTAAGGAATTGCAGTCTCGGCCTGCTGATTCTGTGAATCC-TACCGATCAAATCCTTCTTGCTCATCAGATTC-TTGAAGCTGCTCTTAT-GGGTATGTTTCTTTTTTTTGAAGTTTTTTGGTTTGTTTGTGAAGTTTCTTCTTTTGATTGGTTCATGGTGTGTTTCCTTTTTTCCAAAGTTTGAACCTTTTTTGGTTTGTTTGGAGTTCTTTCTGATTATCACTTCATGTGTATGTTCCTTTTTGCAAATTTTGAATCTTTTTTGGATTGTTTGGAGTTTTTTCTGATGATCACTTCATGTGTATCTTCCTTTTTGCAAATGTTGAATCTTTTTTGGGTTGTTTGAGGAGTTAGTTTTTTTCTGATGATTAATACATGAGTATAGGTGTGAGAGGTTTGATGTGAATGGTTTCAGGAGAGGACGAGGTCAACCGAAGAAAGTATTGTGGGAGGAGAGGTGATTAGACATGATATGACACAGTTTCAACTTATCAAGTACCTGATTTTATTAGATGGGAGGTTGTGGATGACATGGATTAGGATAGAAGCTTAGTAGGTAATAGTGCATTGTCTCACTATCTGTCCATACTATAGTTATACTGTTGCTTATGTGGTTTCTTGCCTTCGATTTCTGATTACTTTGGCTGTTTCTTGTTCTTCATTATCATATTATTTATTGTAGTAACTTCTTAGTAGGCTTTGCTATGCTTTCGCTTCCTTTACTTCTTTTGGAATGCTTTGGACCATTTTTTTCTGGAGTTGAGGGTATATCAGAAATAACCTCTCTACTCATGATGTAGGGGTAAGGTTTACGTACACTTTACCCTCGATAGGCTCCACTTTGTGGTACTATACTAGGTATGTTGTCGTAGTTCATTTTCTATTTGTGTTCTTCCGGTTATTTTTAGTTGTTTATAGAATTTCTTTTATGACTAATTCATGGGTATGTTTCTTTTCGCATCATTTTAAACATGTTTTGGGTTGTTTTCTGAATTCCCCCTTTATGGTTATTTTGAGCAGCAAAGTGAACTAGTTAGGATTGAGTGAGAGATGCTATGATTTAGTTAATTGGGACATTCGGGTATGTTTAGCAGAACCTCTGTTGTGATCCCTTTGGTTACTAGTTCTCAAGTAAATTGTAACGAGTTCAAGGGCGGATTTTGTCTTTAGGCAGCAAGTGTCACTGGAATCACTTTTGTTGACTTGAACTGTATCTTTAGTTGAACAATTTTAAAGAAATACTCCCTCCTTTCAATTTGTTTGTCCTACTTTCCTTTTAAGTCCATTTCAAAAAGATTTTCTTTTTCCTTTTTTAACATCTCTTTGTTTCCAACTTTCCACTTGGCATGTTCACAAGATTAAAGGGCATTCAATACATTTGACATATCCTTAATGTAAGACCACAAGATTCACAAGTATACTTTACTTTCTTAACTCTGCCAAGTTACAATAGCACAAACAGATTGAAATGGAAGGAGTATATGTTTATAGTTTATACTGAACTTCACTGCCACTGATGTAGATTGGGTGGAGCTTAAAATAAACAGGAAGGATAGGGGAATATGTAGTATTGGTGATCAAAAATCTAGAATGCAGACCCAAGCATTAGGGGCTTGAATCTTTGCTGTAATCAATTAAATTATCCGAACTCCAGAAGAATTAGAGAAGTAGTAATAACAGAACCCAGGTAAGAATTCAATACCGAATTGATGGAAGCAAGTAATGAAGATTCTTGCTTAGACTTGGCTATAGCATCGAAGAAGTATTGACCAGATGAACACAGTTCACCTCAATTGTTCAGCTGTTGCTTAAAAGGATTTCCAGTTGTTAATATACCTGCGCTGGTTACATTAGCATCTCAAGCTTCTCTTGGTGGCGACTATGAAATGGTTTTGATTAGATAGGATAACATCCACTAAGCGAGCCGTTCTTCATTTGTTTTTTTCTTCAAATTTTGAGCCTGTAACAAGTTAATTACTTCAGACATCGTTCCAAGATTCAGACATCGTTCCAAGCTAATCTTCCATGAGTTCATAGGCCTATAGTAGCATTCTTTGGCTCCTAGCTCTCTTGTATTAAAACCTTCTCATGGAAACGTTCTGCCTCTCTGAAATTCACATCAGCCGCAAAATAGTAATGGGCCCAGCAGTAACTTGCACCTGTTGATAAAATTAACCCGGTTTAGAGATTGCTTAAAGAGAAAAATTATATATTTCTAGATGCGAACGTTTTAAAGACAGTCATGTTGTGTGCAATCTCGTCAAGGGAACATAGGAAGTTGCAGGAATGTGCATCTCTTCAACTAAAACTGAACATACAGATTCTCTGATTGGAGAAATGATCCTTAAGGAGAAGATCTTATGAATATTGGCTCAGGGAGTGTTAATGAGACAATTTAGCAAGAGGGGAACCGAAAAATATAATACATTAGGACATCTAGTTTAATGGATCAGAATCATGCCCAAGGGCTGACGAACCCATTGAAGAATTTTTGTGATTCTGCTCGCGAAGTTCATTTATTCACCTTATTAAGAGTTGGTGATTCTCTGAAGCTGCTGCGCAATGCACTTCTTCAAGCAAGGTGTGATGCAGGAATTGTCAGAAAGATCTTGAAATCATCTTTTTCTCCAGCATGGCATAAGATAGTATAGAACATGAAAGGTTATATGCTTCCGACGCCACCAGTTGTCTAAATTTTGTTTCCACAATGCTGGTACTGTGTAAACCATGTTGCCCGGATTCTTAAAAAATGTCAATGGGTGCGTGTCGGATTCTCCAAAAGTAGTGTGTTTTTGGAGAACCCGACATGGCCGAAAGTGAAGAGTCCACGCAACTTATTGTAAACCCCGCCCCCTCCATTTTTTCCTGTTTGATTTGATTCCACAGTGTAAAACAGAGAAAAACTAGGGCACATATATTGTTTTTGCCCCCCAAGACTGTTATTGGAGAGATTTGCTTACAAGATGGAGGGAGTTCTATTCTTAATGGAGACTAATATGCTTGTATCTCAGTCTTTCTTGTTGATTGTTATGGACACTAGCCGCATGCTCATGACATAGAGAATTCTCGTGAAAGGTCTGCGTGATTGCAGTATATTTGGCCTGTAATTTGCTCAGCTTAAGGTAGGGAAGCAATAGCTCAAATTCTACATCTAAATCCTTAGCTAAACTAAGGAATCAAGCACCCAATCCCTAGTAACCTCTTGATATTCGAGGTTGTTGGGACAGATATCTAGCTTTAGTGGAGTTATCTGGCAAGTATAGGCGGATAAATGAAGGGCATAAAAAACACCTGTACACAACAAGTGTACCAAAAGTAGAAACCTTACAGAAAGATGTATTTTTCTATTTTTCTACAGAAGTCGCCCAATCTCTTATTCTAGTAGGAATCTCGTGGGTGTTTCTTTGTTTGGTCCGCGCATATATGGAAGTCTTATTATCTGAGTCGAGAGTTGCCTAAACATGGAAGTTATAGTGATATACAGTTATTCACTGTTTTTCTCTGTATACCTTGCACTAATGATCAATCTGTCACTCCGCCCATGACTTAATCAGTCCAGTCTGAGTGCTGGAAATGTTCTTACCTTTTTGTTTGTGTGCTCATACATGCGGGGTATATGGCTTTAGGAGTAGTATTGACCTTAACAGTTCACCCAGCAAGGTGTTTATTGTATGATGGCATTTTGGGATTATTTGAGCTGTAGGTTCGGTTTCACAGATTCTTTTTTCTCCTTTTGCGTTGGCACACCGTGTCGACGGATGAAATGAGGGTGTGATACTTTGTGCAGATTCTTCAATAGTAGACCAAGAATTAGCAAAATTGTGGCACACCGATGACAACAATACCCGTACCTGATGTGAACCTGTAAACAAATTGTGTAACATAGATTGTAGGGTCACTCGTTGATGTATTCTAGCACTAGGGCCTCTGTTGAACCGCAAAATGCTCCCTCCCTCTGCCATAAATTTGCACAAGATCGAAAGGCCCTCAAGCACCAGCCATAGGGAGTATGAGGAACTGATCTTCTTCCAGTTCTGGATAAATAATTGTGCCCTTTATTTTAGATTCTTAACTTTTCCTGATGTAATATGTATTATCCTTTTAATATATGATCTAATGATGACACACTACCTTGACATTTATTACATGCAAAATTAAGTAGATATGGCTAGTAGAATTCAGATCCCACGGTTTAATCATCATCTGTTTGAAGCAAGTTTCTGCATAACGGGGTTCAAATGCTTTTAATTTCTTGCAGGATTCTCTCTATTCC-TCGGACTGATGATTGACA-GGCTACACCA</genome_strand>
        <mrna_strand>GTACACTCTATTCACCGTTTTTTCTGAAAAAAATCAACACCCTTTTCCACCAATAATCAAACTTTCTTGTACAAAAATCTTTCTTAACCAGTAAAGAAAAACCCCTTTTGGTGAAATTTTTGAATCACAGAAAAAAAAAGGAGTTAATTTGGTGGTGTATTCAAAATGTTAGCTCAAGTTCAGCTTTTGTTCATGGTGGTGTTCTTGGAAATGGGGTTGATTTTGATGTTTCTGTTTAGAACCCCTTTGAGGAAACTGATAATTATGACTCTTGATCGTGTTAAAAGAGGCAGTGGACCGTTGATTGTTAAATCTGTAGCAGCTACTGTTCTTGTGATCATGATTTATACTGTTTATTCTATTAAGGAATTGCAGTCTCGTCCTGCTGATTCTGTAAATCCGTACTGATCAAATCCTTCTTGGTCATCAAATTCTTTGAAGCTGCTCTTATGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCTCTCTATTCCTTGGGACTGATGATCGACAGGGCTACACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318835" ref_strand="+" ref_description="SGN-E318835 [cTOB-11-H10]">
      <seq>gaggccatctgtaccactgtattcacagttttttctgaaaaaaatcaacacccttttcaccaaaaatcaaactttattgtaccaaaaatccttcttaactagttaagaagagccccttttggtgaaattgttgaatcacagaaaaaaaaagcagttgatttggtggtgtattcaaaatgttacctcaagtgcagcttttgttcatggtggtgttcttggaaatggggttgattttgatgtttctgttcagaacccctttgaggaaactgataattatgagtcttgatcgtgttaaaagaggcagtggaccgttgattgttaaatctgtagcagctactgttcttgtgatcatgatttatactgtttattctattaaagaattgcagtctcggcctgctgattctgtgaatcctaccgatcaaatccttcttgctcatcagattcttgaagctgctcttatgggattctctctattcctcggactgatgattgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0090D09.1" temp_strand="-" temp_description="C12HBa0090D09.1  AC212766.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0090D09 upload_account_name:italy">
        <position start="10617" stop="5363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10321" g_stop="9862" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9861" i_stop="5696" i_length="4166">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5695" g_stop="5663" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="495" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0090D09.1" gen_strand="-" ref_id="SGN-E318835" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0090D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10321" e_stop="9862"/>
          <exon e_start="5695" e_stop="5663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACCATCTGTA-CACTGTATTCACAGTTTTTTCTGAAAAAAATCAACACCCTTTTCACCAAAAATCAAACTTTATTGTA-CAAAAATCCTTCTTAACTAGTTAAGAAGAGCCCCTTTTGGTGAAATTGTTGAATCACAGAAAAAAAAAGCAGTTGATTTGGTGGTGTATTCAAAATGTTACCTCAAGTGCAGCTTTTGTTCATGGTGGTGTTCTTGGAAATGGGGTTGATTTTGATGTTTCTGTTCAGAACCCCTTTGAGGAAACTGATAATTATGAGTCTTGATCGTGTTAAAAGAGGCAGTGGACCGTTGATTGTTAAATCTGTAGCAGCTACTGTTCTTGTGATCATGATTTATACTGTTTATTCTATTAAGGAATTGCAGTCTCGGCCTGCTGATTCTGTGAATCCTACCGATCAAATCCTTCTTGCTCATCAGATTCTTGAAGCTGCTCTTATGGGTATGTTTCTTTTTTTTGAAGTTTTTTGGTTTGTTTGTGAAGTTTCTTCTTTTGATTGGTTCATGGTGTGTTTCCTTTTTTCCAAAGTTTGAACCTTTTTTGGTTTGTTTGGAGTTCTTTCTGATTATCACTTCATGTGTATGTTCCTTTTTGCAAATTTTGAATCTTTTTTGGATTGTTTGGAGTTTTTTCTGATGATCACTTCATGTGTATCTTCCTTTTTGCAAATGTTGAATCTTTTTTGGGTTGTTTGAGGAGTTAGTTTTTTTCTGATGATTAATACATGAGTATAGGTGTGAGAGGTTTGATGTGAATGGTTTCAGGAGAGGACGAGGTCAACCGAAGAAAGTATTGTGGGAGGAGAGGTGATTAGACATGATATGACACAGTTTCAACTTATCAAGTACCTGATTTTATTAGATGGGAGGTTGTGGATGACATGGATTAGGATAGAAGCTTAGTAGGTAATAGTGCATTGTCTCACTATCTGTCCATACTATAGTTATACTGTTGCTTATGTGGTTTCTTGCCTTCGATTTCTGATTACTTTGGCTGTTTCTTGTTCTTCATTATCATATTATTTATTGTAGTAACTTCTTAGTAGGCTTTGCTATGCTTTCGCTTCCTTTACTTCTTTTGGAATGCTTTGGACCATTTTTTTCTGGAGTTGAGGGTATATCAGAAATAACCTCTCTACTCATGATGTAGGGGTAAGGTTTACGTACACTTTACCCTCGATAGGCTCCACTTTGTGGTACTATACTAGGTATGTTGTCGTAGTTCATTTTCTATTTGTGTTCTTCCGGTTATTTTTAGTTGTTTATAGAATTTCTTTTATGACTAATTCATGGGTATGTTTCTTTTCGCATCATTTTAAACATGTTTTGGGTTGTTTTCTGAATTCCCCCTTTATGGTTATTTTGAGCAGCAAAGTGAACTAGTTAGGATTGAGTGAGAGATGCTATGATTTAGTTAATTGGGACATTCGGGTATGTTTAGCAGAACCTCTGTTGTGATCCCTTTGGTTACTAGTTCTCAAGTAAATTGTAACGAGTTCAAGGGCGGATTTTGTCTTTAGGCAGCAAGTGTCACTGGAATCACTTTTGTTGACTTGAACTGTATCTTTAGTTGAACAATTTTAAAGAAATACTCCCTCCTTTCAATTTGTTTGTCCTACTTTCCTTTTAAGTCCATTTCAAAAAGATTTTCTTTTTCCTTTTTTAACATCTCTTTGTTTCCAACTTTCCACTTGGCATGTTCACAAGATTAAAGGGCATTCAATACATTTGACATATCCTTAATGTAAGACCACAAGATTCACAAGTATACTTTACTTTCTTAACTCTGCCAAGTTACAATAGCACAAACAGATTGAAATGGAAGGAGTATATGTTTATAGTTTATACTGAACTTCACTGCCACTGATGTAGATTGGGTGGAGCTTAAAATAAACAGGAAGGATAGGGGAATATGTAGTATTGGTGATCAAAAATCTAGAATGCAGACCCAAGCATTAGGGGCTTGAATCTTTGCTGTAATCAATTAAATTATCCGAACTCCAGAAGAATTAGAGAAGTAGTAATAACAGAACCCAGGTAAGAATTCAATACCGAATTGATGGAAGCAAGTAATGAAGATTCTTGCTTAGACTTGGCTATAGCATCGAAGAAGTATTGACCAGATGAACACAGTTCACCTCAATTGTTCAGCTGTTGCTTAAAAGGATTTCCAGTTGTTAATATACCTGCGCTGGTTACATTAGCATCTCAAGCTTCTCTTGGTGGCGACTATGAAATGGTTTTGATTAGATAGGATAACATCCACTAAGCGAGCCGTTCTTCATTTGTTTTTTTCTTCAAATTTTGAGCCTGTAACAAGTTAATTACTTCAGACATCGTTCCAAGATTCAGACATCGTTCCAAGCTAATCTTCCATGAGTTCATAGGCCTATAGTAGCATTCTTTGGCTCCTAGCTCTCTTGTATTAAAACCTTCTCATGGAAACGTTCTGCCTCTCTGAAATTCACATCAGCCGCAAAATAGTAATGGGCCCAGCAGTAACTTGCACCTGTTGATAAAATTAACCCGGTTTAGAGATTGCTTAAAGAGAAAAATTATATATTTCTAGATGCGAACGTTTTAAAGACAGTCATGTTGTGTGCAATCTCGTCAAGGGAACATAGGAAGTTGCAGGAATGTGCATCTCTTCAACTAAAACTGAACATACAGATTCTCTGATTGGAGAAATGATCCTTAAGGAGAAGATCTTATGAATATTGGCTCAGGGAGTGTTAATGAGACAATTTAGCAAGAGGGGAACCGAAAAATATAATACATTAGGACATCTAGTTTAATGGATCAGAATCATGCCCAAGGGCTGACGAACCCATTGAAGAATTTTTGTGATTCTGCTCGCGAAGTTCATTTATTCACCTTATTAAGAGTTGGTGATTCTCTGAAGCTGCTGCGCAATGCACTTCTTCAAGCAAGGTGTGATGCAGGAATTGTCAGAAAGATCTTGAAATCATCTTTTTCTCCAGCATGGCATAAGATAGTATAGAACATGAAAGGTTATATGCTTCCGACGCCACCAGTTGTCTAAATTTTGTTTCCACAATGCTGGTACTGTGTAAACCATGTTGCCCGGATTCTTAAAAAATGTCAATGGGTGCGTGTCGGATTCTCCAAAAGTAGTGTGTTTTTGGAGAACCCGACATGGCCGAAAGTGAAGAGTCCACGCAACTTATTGTAAACCCCGCCCCCTCCATTTTTTCCTGTTTGATTTGATTCCACAGTGTAAAACAGAGAAAAACTAGGGCACATATATTGTTTTTGCCCCCCAAGACTGTTATTGGAGAGATTTGCTTACAAGATGGAGGGAGTTCTATTCTTAATGGAGACTAATATGCTTGTATCTCAGTCTTTCTTGTTGATTGTTATGGACACTAGCCGCATGCTCATGACATAGAGAATTCTCGTGAAAGGTCTGCGTGATTGCAGTATATTTGGCCTGTAATTTGCTCAGCTTAAGGTAGGGAAGCAATAGCTCAAATTCTACATCTAAATCCTTAGCTAAACTAAGGAATCAAGCACCCAATCCCTAGTAACCTCTTGATATTCGAGGTTGTTGGGACAGATATCTAGCTTTAGTGGAGTTATCTGGCAAGTATAGGCGGATAAATGAAGGGCATAAAAAACACCTGTACACAACAAGTGTACCAAAAGTAGAAACCTTACAGAAAGATGTATTTTTCTATTTTTCTACAGAAGTCGCCCAATCTCTTATTCTAGTAGGAATCTCGTGGGTGTTTCTTTGTTTGGTCCGCGCATATATGGAAGTCTTATTATCTGAGTCGAGAGTTGCCTAAACATGGAAGTTATAGTGATATACAGTTATTCACTGTTTTTCTCTGTATACCTTGCACTAATGATCAATCTGTCACTCCGCCCATGACTTAATCAGTCCAGTCTGAGTGCTGGAAATGTTCTTACCTTTTTGTTTGTGTGCTCATACATGCGGGGTATATGGCTTTAGGAGTAGTATTGACCTTAACAGTTCACCCAGCAAGGTGTTTATTGTATGATGGCATTTTGGGATTATTTGAGCTGTAGGTTCGGTTTCACAGATTCTTTTTTCTCCTTTTGCGTTGGCACACCGTGTCGACGGATGAAATGAGGGTGTGATACTTTGTGCAGATTCTTCAATAGTAGACCAAGAATTAGCAAAATTGTGGCACACCGATGACAACAATACCCGTACCTGATGTGAACCTGTAAACAAATTGTGTAACATAGATTGTAGGGTCACTCGTTGATGTATTCTAGCACTAGGGCCTCTGTTGAACCGCAAAATGCTCCCTCCCTCTGCCATAAATTTGCACAAGATCGAAAGGCCCTCAAGCACCAGCCATAGGGAGTATGAGGAACTGATCTTCTTCCAGTTCTGGATAAATAATTGTGCCCTTTATTTTAGATTCTTAACTTTTCCTGATGTAATATGTATTATCCTTTTAATATATGATCTAATGATGACACACTACCTTGACATTTATTACATGCAAAATTAAGTAGATATGGCTAGTAGAATTCAGATCCCACGGTTTAATCATCATCTGTTTGAAGCAAGTTTCTGCATAACGGGGTTCAAATGCTTTTAATTTCTTGCAGGATTCTCTCTATTCCTCGGACTGATGATTGACA</genome_strand>
        <mrna_strand>GAGGCCATCTGTACCACTGTATTCACAGTTTTTTCTGAAAAAAATCAACACCCTTTTCACCAAAAATCAAACTTTATTGTACCAAAAATCCTTCTTAACTAGTTAAGAAGAGCCCCTTTTGGTGAAATTGTTGAATCACAGAAAAAAAAAGCAGTTGATTTGGTGGTGTATTCAAAATGTTACCTCAAGTGCAGCTTTTGTTCATGGTGGTGTTCTTGGAAATGGGGTTGATTTTGATGTTTCTGTTCAGAACCCCTTTGAGGAAACTGATAATTATGAGTCTTGATCGTGTTAAAAGAGGCAGTGGACCGTTGATTGTTAAATCTGTAGCAGCTACTGTTCTTGTGATCATGATTTATACTGTTTATTCTATTAAAGAATTGCAGTCTCGGCCTGCTGATTCTGTGAATCCTACCGATCAAATCCTTCTTGCTCATCAGATTCTTGAAGCTGCTCTTATGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCTCTCTATTCCTCGGACTGATGATTGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318836" ref_strand="+" ref_description="SGN-E318836 [cTOB-11-H12]">
      <seq>ttttttctgaaaaaaatcaacaccgttttcacctgaaatcaaactttattgtccaaaaattcttatcatcttgttaagaagagccccttttggtgaaattgttgaatcacagaaaaaaaaagcagttgatttggtggtgtattcaaaatgttacctcaagtgcagcttttgttcatggtggtgttcttggaaatggggttgattttgatgtttctgttcagaacccctttgaagaaactgataattatgagtcttgatcgtgttaaaagaggcagtggaccgttgattgttaaatctgtagcagctactgttcttgtgatcatgatttatactgtttattctattaaggaattgcagtctcggcctgctgattctgtgaatcctaccgatcaaatccttcttgctcatcagattcttgaagctgctcttatgggattctctctattcctcggactgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0090D09.1" temp_strand="-" temp_description="C12HBa0090D09.1  AC212766.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0090D09 upload_account_name:italy">
        <position start="10594" stop="5370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10294" g_stop="9862" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9861" i_stop="5696" i_length="4166">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5695" g_stop="5670" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="459" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0090D09.1" gen_strand="-" ref_id="SGN-E318836" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0090D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10294" e_stop="9862"/>
          <exon e_start="5695" e_stop="5670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTGAAAAAAATCAACACCCTTTTCACCAAAAATCAAACTTTATTGTACAAAAATCCTTCTTAACTAGTTAAGAAGAGCCCCTTTTGGTGAAATTGTTGAATCACAGAAAAAAAAAGCAGTTGATTTGGTGGTGTATTCAAAATGTTACCTCAAGTGCAGCTTTTGTTCATGGTGGTGTTCTTGGAAATGGGGTTGATTTTGATGTTTCTGTTCAGAACCCCTTTGAGGAAACTGATAATTATGAGTCTTGATCGTGTTAAAAGAGGCAGTGGACCGTTGATTGTTAAATCTGTAGCAGCTACTGTTCTTGTGATCATGATTTATACTGTTTATTCTATTAAGGAATTGCAGTCTCGGCCTGCTGATTCTGTGAATCCTACCGATCAAATCCTTCTTGCTCATCAGATTCTTGAAGCTGCTCTTATGGGTATGTTTCTTTTTTTTGAAGTTTTTTGGTTTGTTTGTGAAGTTTCTTCTTTTGATTGGTTCATGGTGTGTTTCCTTTTTTCCAAAGTTTGAACCTTTTTTGGTTTGTTTGGAGTTCTTTCTGATTATCACTTCATGTGTATGTTCCTTTTTGCAAATTTTGAATCTTTTTTGGATTGTTTGGAGTTTTTTCTGATGATCACTTCATGTGTATCTTCCTTTTTGCAAATGTTGAATCTTTTTTGGGTTGTTTGAGGAGTTAGTTTTTTTCTGATGATTAATACATGAGTATAGGTGTGAGAGGTTTGATGTGAATGGTTTCAGGAGAGGACGAGGTCAACCGAAGAAAGTATTGTGGGAGGAGAGGTGATTAGACATGATATGACACAGTTTCAACTTATCAAGTACCTGATTTTATTAGATGGGAGGTTGTGGATGACATGGATTAGGATAGAAGCTTAGTAGGTAATAGTGCATTGTCTCACTATCTGTCCATACTATAGTTATACTGTTGCTTATGTGGTTTCTTGCCTTCGATTTCTGATTACTTTGGCTGTTTCTTGTTCTTCATTATCATATTATTTATTGTAGTAACTTCTTAGTAGGCTTTGCTATGCTTTCGCTTCCTTTACTTCTTTTGGAATGCTTTGGACCATTTTTTTCTGGAGTTGAGGGTATATCAGAAATAACCTCTCTACTCATGATGTAGGGGTAAGGTTTACGTACACTTTACCCTCGATAGGCTCCACTTTGTGGTACTATACTAGGTATGTTGTCGTAGTTCATTTTCTATTTGTGTTCTTCCGGTTATTTTTAGTTGTTTATAGAATTTCTTTTATGACTAATTCATGGGTATGTTTCTTTTCGCATCATTTTAAACATGTTTTGGGTTGTTTTCTGAATTCCCCCTTTATGGTTATTTTGAGCAGCAAAGTGAACTAGTTAGGATTGAGTGAGAGATGCTATGATTTAGTTAATTGGGACATTCGGGTATGTTTAGCAGAACCTCTGTTGTGATCCCTTTGGTTACTAGTTCTCAAGTAAATTGTAACGAGTTCAAGGGCGGATTTTGTCTTTAGGCAGCAAGTGTCACTGGAATCACTTTTGTTGACTTGAACTGTATCTTTAGTTGAACAATTTTAAAGAAATACTCCCTCCTTTCAATTTGTTTGTCCTACTTTCCTTTTAAGTCCATTTCAAAAAGATTTTCTTTTTCCTTTTTTAACATCTCTTTGTTTCCAACTTTCCACTTGGCATGTTCACAAGATTAAAGGGCATTCAATACATTTGACATATCCTTAATGTAAGACCACAAGATTCACAAGTATACTTTACTTTCTTAACTCTGCCAAGTTACAATAGCACAAACAGATTGAAATGGAAGGAGTATATGTTTATAGTTTATACTGAACTTCACTGCCACTGATGTAGATTGGGTGGAGCTTAAAATAAACAGGAAGGATAGGGGAATATGTAGTATTGGTGATCAAAAATCTAGAATGCAGACCCAAGCATTAGGGGCTTGAATCTTTGCTGTAATCAATTAAATTATCCGAACTCCAGAAGAATTAGAGAAGTAGTAATAACAGAACCCAGGTAAGAATTCAATACCGAATTGATGGAAGCAAGTAATGAAGATTCTTGCTTAGACTTGGCTATAGCATCGAAGAAGTATTGACCAGATGAACACAGTTCACCTCAATTGTTCAGCTGTTGCTTAAAAGGATTTCCAGTTGTTAATATACCTGCGCTGGTTACATTAGCATCTCAAGCTTCTCTTGGTGGCGACTATGAAATGGTTTTGATTAGATAGGATAACATCCACTAAGCGAGCCGTTCTTCATTTGTTTTTTTCTTCAAATTTTGAGCCTGTAACAAGTTAATTACTTCAGACATCGTTCCAAGATTCAGACATCGTTCCAAGCTAATCTTCCATGAGTTCATAGGCCTATAGTAGCATTCTTTGGCTCCTAGCTCTCTTGTATTAAAACCTTCTCATGGAAACGTTCTGCCTCTCTGAAATTCACATCAGCCGCAAAATAGTAATGGGCCCAGCAGTAACTTGCACCTGTTGATAAAATTAACCCGGTTTAGAGATTGCTTAAAGAGAAAAATTATATATTTCTAGATGCGAACGTTTTAAAGACAGTCATGTTGTGTGCAATCTCGTCAAGGGAACATAGGAAGTTGCAGGAATGTGCATCTCTTCAACTAAAACTGAACATACAGATTCTCTGATTGGAGAAATGATCCTTAAGGAGAAGATCTTATGAATATTGGCTCAGGGAGTGTTAATGAGACAATTTAGCAAGAGGGGAACCGAAAAATATAATACATTAGGACATCTAGTTTAATGGATCAGAATCATGCCCAAGGGCTGACGAACCCATTGAAGAATTTTTGTGATTCTGCTCGCGAAGTTCATTTATTCACCTTATTAAGAGTTGGTGATTCTCTGAAGCTGCTGCGCAATGCACTTCTTCAAGCAAGGTGTGATGCAGGAATTGTCAGAAAGATCTTGAAATCATCTTTTTCTCCAGCATGGCATAAGATAGTATAGAACATGAAAGGTTATATGCTTCCGACGCCACCAGTTGTCTAAATTTTGTTTCCACAATGCTGGTACTGTGTAAACCATGTTGCCCGGATTCTTAAAAAATGTCAATGGGTGCGTGTCGGATTCTCCAAAAGTAGTGTGTTTTTGGAGAACCCGACATGGCCGAAAGTGAAGAGTCCACGCAACTTATTGTAAACCCCGCCCCCTCCATTTTTTCCTGTTTGATTTGATTCCACAGTGTAAAACAGAGAAAAACTAGGGCACATATATTGTTTTTGCCCCCCAAGACTGTTATTGGAGAGATTTGCTTACAAGATGGAGGGAGTTCTATTCTTAATGGAGACTAATATGCTTGTATCTCAGTCTTTCTTGTTGATTGTTATGGACACTAGCCGCATGCTCATGACATAGAGAATTCTCGTGAAAGGTCTGCGTGATTGCAGTATATTTGGCCTGTAATTTGCTCAGCTTAAGGTAGGGAAGCAATAGCTCAAATTCTACATCTAAATCCTTAGCTAAACTAAGGAATCAAGCACCCAATCCCTAGTAACCTCTTGATATTCGAGGTTGTTGGGACAGATATCTAGCTTTAGTGGAGTTATCTGGCAAGTATAGGCGGATAAATGAAGGGCATAAAAAACACCTGTACACAACAAGTGTACCAAAAGTAGAAACCTTACAGAAAGATGTATTTTTCTATTTTTCTACAGAAGTCGCCCAATCTCTTATTCTAGTAGGAATCTCGTGGGTGTTTCTTTGTTTGGTCCGCGCATATATGGAAGTCTTATTATCTGAGTCGAGAGTTGCCTAAACATGGAAGTTATAGTGATATACAGTTATTCACTGTTTTTCTCTGTATACCTTGCACTAATGATCAATCTGTCACTCCGCCCATGACTTAATCAGTCCAGTCTGAGTGCTGGAAATGTTCTTACCTTTTTGTTTGTGTGCTCATACATGCGGGGTATATGGCTTTAGGAGTAGTATTGACCTTAACAGTTCACCCAGCAAGGTGTTTATTGTATGATGGCATTTTGGGATTATTTGAGCTGTAGGTTCGGTTTCACAGATTCTTTTTTCTCCTTTTGCGTTGGCACACCGTGTCGACGGATGAAATGAGGGTGTGATACTTTGTGCAGATTCTTCAATAGTAGACCAAGAATTAGCAAAATTGTGGCACACCGATGACAACAATACCCGTACCTGATGTGAACCTGTAAACAAATTGTGTAACATAGATTGTAGGGTCACTCGTTGATGTATTCTAGCACTAGGGCCTCTGTTGAACCGCAAAATGCTCCCTCCCTCTGCCATAAATTTGCACAAGATCGAAAGGCCCTCAAGCACCAGCCATAGGGAGTATGAGGAACTGATCTTCTTCCAGTTCTGGATAAATAATTGTGCCCTTTATTTTAGATTCTTAACTTTTCCTGATGTAATATGTATTATCCTTTTAATATATGATCTAATGATGACACACTACCTTGACATTTATTACATGCAAAATTAAGTAGATATGGCTAGTAGAATTCAGATCCCACGGTTTAATCATCATCTGTTTGAAGCAAGTTTCTGCATAACGGGGTTCAAATGCTTTTAATTTCTTGCAGGATTCTCTCTATTCCTCGGACTGATG</genome_strand>
        <mrna_strand>TTTTTTCTGAAAAAAATCAACACCGTTTTCACCTGAAATCAAACTTTATTGTCCAAAAATTCTTATCATCTTGTTAAGAAGAGCCCCTTTTGGTGAAATTGTTGAATCACAGAAAAAAAAAGCAGTTGATTTGGTGGTGTATTCAAAATGTTACCTCAAGTGCAGCTTTTGTTCATGGTGGTGTTCTTGGAAATGGGGTTGATTTTGATGTTTCTGTTCAGAACCCCTTTGAAGAAACTGATAATTATGAGTCTTGATCGTGTTAAAAGAGGCAGTGGACCGTTGATTGTTAAATCTGTAGCAGCTACTGTTCTTGTGATCATGATTTATACTGTTTATTCTATTAAGGAATTGCAGTCTCGGCCTGCTGATTCTGTGAATCCTACCGATCAAATCCTTCTTGCTCATCAGATTCTTGAAGCTGCTCTTATGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCTCTCTATTCCTCGGACTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269381" ref_strand="+" ref_description="SGN-E269381 [cLEM-18-L17]">
      <seq>aaattctagaatcatctactaacttccaatcaggtaccctaaattctcccatccagaaccctacacctgatcatgagccaaacgtcgacatttatgaagttatacgagcttcggattgtggtattggtcgggtattggaaaatttagggctaagattgcggagggaatggttagaatcatgtgttggaggacttgaaggatcagtagtaggagagttttctggattggatgatacgaccaaggcgaaactttgtttcgagcagtttttgtactcggatatgattttttgtggtgcaggaatgcttccaagggacgttcacaagctgcatttggttgatcttaaagggccctttgttcttcaggtagatgagattgtgaatatcagttggcctcttcgagataggtatcagaaagtagctgctggaataaagaggtgtctgaaattgtccatgactgatggcattcagcgagtgtttgggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0090D09.1" temp_strand="+" temp_description="C12HBa0090D09.1  AC212766.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0090D09 upload_account_name:italy">
        <position start="15729" stop="18092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16029" g_stop="16390" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16391" i_stop="17672" i_length="1282">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.151" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17673" g_stop="17792" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="482" r_length="120" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0090D09.1" gen_strand="+" ref_id="SGN-E269381" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0090D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16029" e_stop="16390"/>
          <exon e_start="17673" e_stop="17792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCTAGAATCATCTACTAACTTCCAATCAGTTACCCTAAATTCTCCCATCCAGAACCCTACACCTGATCATGAGCCAAACGTCGACATTTATGAAGTTATACGAGCTTCGGATTGTGGTATTGGTCGGGTATTGGAAAATTTAGGGCTAAGATTGCGGAGGGAATGGTTAGAATCATGTGTTGGAGGACTTGAAGGATCAGTAGTAGGAGAGTTTTCTGGATTGGATGATACGACCAAGGCGAAACTTTGTTTCGAGCAGTTTTTGTACTCGGATATGATTTTTTGTGGTGCAGGAATGCTTCCAAGGGACGTTCACAAGCTGCATTTGGTTGATCTTAAAGGGCCCTTTGTTCTTCAGGTATAGTGAAAATCTAAATGCCGATGAAGTTTATTGCTGTTGTGGTTTCAATATGTAATTTTGTTAAAGCTTTACCGGCGATGAGGTGGGGAGAGTGGAAGTAAGGAAAATTGGGAATATCCCTCATCTTATACTGCTCTCCTGATACAAAATCTGAAATTTTATCACTTACTCTTGAGGGCACTAGTGCTGGATGTTTGATAGTTTCTCCTCCTTCATAGATGTACAGTACATAGTCTTTCTCTTGCATTTTTCGCATGGAGGTTGTTTCAATGCTTTGAAATTGGTGAGGAACCATGGAGCAACTTGCTGGGGTGTAGTACATTTGTAATACAACATTGGTGATACTAAAAAAGTTAAAGTTGTTTGTTAATTTGTCTTTATAAATTGAATTAGTTCAACTTTCATGTTTGTAAATGAAAGGCTATGACTTGACATCTTAGTTAAGTTTTGTTTGAAGTACCTATATGAATCCTTTTAGTTTCATTTCTTTATAATGGAAGTACCAATGCGAGTCTTTACTTCAATAACTTATTTAGTTATCTAATACATTGGTTTATCACAATATAAAGCTGGATGGACGACAATATCTAACATGTGTAACCAAAAGGGACGGGGCTTCTTTAATTGTGCATCGAGGAGAATTTGTATATTTTAGTTTTGTTATGTTTTGAGGAAGAAATTTCTTAAAGAAAGCTCAATATTCACATGGATGAGTAGCTTATCTTATTTTCTTCTTGATGAAAGTAACTCATAATTTCGTGTACTTCTTAAAACTATTTGGGAAGGCATTTCAGGAATTGGGTTTGCTGAGAAAGAAGTTGGAAACAGGCATTAGTTAGTTTTGGTATTAACGAGCTTCTATTGTTTTCTCCTTTTTCTCCTCTTATTTATTTGAAAGAGAGTATGGTTTCTTCTTTGTAAAGTGCCAAATCAGAAAGTTATGGAGTGATCAAGAAAACTTCATTACTTTCTGCAAGCAGTTAGTGAACAGAAAAGTTCCAAATTTATTAAAAAATATTGATCTATCCCATCAAAAAAGAAGTAAAAGGAAATTGGTGAGAAGAGACTCATCCAAGTTCTTGGGTTTGAAAATCAAAGTTCATTCGCTTAATTTCTTTCATAGCAGTTGCTTACTGAAACCAATTTGGAAAAGTTGGTAGTTCAATATGACATTTCTTGCAATTAGCTTTAGTGTACCAGAAGCTTCCTTAAATTTGGTCAGCCTATACCTTTAATGTGACTCTGACTATTCAAGTGTTTCATCCCCTTCTCCCTCAAGGTAGATGAGATTGTGAATATCAGTTGTCCTCTTCGAGATAGGTATCAGAAAGTAGCTGCTGGAATAAAGAGGTGTCTGAAATTGTCCATGACTGATGGCATTCAGCGAGTGTTTGGGATG</genome_strand>
        <mrna_strand>AAATTCTAGAATCATCTACTAACTTCCAATCAGGTACCCTAAATTCTCCCATCCAGAACCCTACACCTGATCATGAGCCAAACGTCGACATTTATGAAGTTATACGAGCTTCGGATTGTGGTATTGGTCGGGTATTGGAAAATTTAGGGCTAAGATTGCGGAGGGAATGGTTAGAATCATGTGTTGGAGGACTTGAAGGATCAGTAGTAGGAGAGTTTTCTGGATTGGATGATACGACCAAGGCGAAACTTTGTTTCGAGCAGTTTTTGTACTCGGATATGATTTTTTGTGGTGCAGGAATGCTTCCAAGGGACGTTCACAAGCTGCATTTGGTTGATCTTAAAGGGCCCTTTGTTCTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGATGAGATTGTGAATATCAGTTGGCCTCTTCGAGATAGGTATCAGAAAGTAGCTGCTGGAATAAAGAGGTGTCTGAAATTGTCCATGACTGATGGCATTCAGCGAGTGTTTGGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211408" ref_strand="+" ref_description="SGN-E211408 [cLEC-67-C4]">
      <seq>aagtagctgctggaataaagaggtgtctgaaattgtccatgactgatggcattcagcgagtgtttgggatggagtacaggcctataaaagatctcgatgttctagctccttctggactgaaggttgctatctgtaatgttcatgttaggcatggaattctgatgttggtccctgaagttattgaagttctgggtgggatggtggaagacttagaagaagcaaggaagcggctagttaatgaaataaataagccaccaagggggaaaagaacaaggtctggtgtggttcctcctttggcaactagagctattgctgctgcatggccacgagaaggtgttactgttccagagcactctgatacttcctcaagacaaaatatgcaatttcaggttcatgaacgaggaacatctggcattgctactactgcaagtgaagaaattcatcccgttagatctgggctaccatcttctacgacattcatcactcctgtttatagaagagaggctcaatctaatatcccatctactccagctgtttctgtcccattcaatangaacgctgaacctaccttttcatctgatgcagctagtcatgcagaggatatccatatggctgacatgaccactgaagacattgatgttgcaattagaaagggaacatatgacactgtcctttcatctttgtcttccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0090D09.1" temp_strand="+" temp_description="C12HBa0090D09.1  AC212766.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0090D09 upload_account_name:italy">
        <position start="17422" stop="19885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17722" g_stop="17843" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17844" i_stop="17997" i_length="154">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17998" g_stop="18143" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="268" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18144" i_stop="18671" i_length="528">
            <donor d_prob="0.615" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18672" g_stop="18805" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="402" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18806" i_stop="19296" i_length="491">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19297" g_stop="19585" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="691" r_length="289" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0090D09.1" gen_strand="+" ref_id="SGN-E211408" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0090D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17722" e_stop="17843"/>
          <exon e_start="17998" e_stop="18143"/>
          <exon e_start="18672" e_stop="18805"/>
          <exon e_start="19297" e_stop="19585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTAGCTGCTGGAATAAAGAGGTGTCTGAAATTGTCCATGACTGATGGCATTCAGCGAGTGTTTGGGATGGAGTACAGGCCTATAAAAGATCTCGATGTTCTAGCTCCTTCTGGACTGAAGGTATATCTATGGAGTACCAATTAGCAATTACTATGTTGTTTATTAGTTTGTCAAGTAGCTTTCAAAGTCTCATTTACAAGATGAGAATGGATAAGAATAATATCCGTCATAAAACTTTTTCCATATTCATATGGATTGTTGCTGCATTTTGCAGGTTGCTATCTGTAATGTTCATGTTAGGCATGGAATTCTGATGTTGGTCCCTGAAGTTATTGAAGTTCTGGGTGGGATGGTGGAAGACTTAGAAGAAGCAAGGAAGCGGCTAGTTAATGAAATAAATAAGCCACCAAGGGGGAAAAGGTATGACGAAGGACCAAGAAAACATTTACTGTTTGAACCTAATTACCAAATTCTGATATTGTTGGTAGATGCCTTATACAAGTGTTGAATTCACTTGAATGGCAGAGGTTGATGCTCAGTGCTAGCATTAGAGGACCCTGACTGACTGTATATTTGAATGTAATCAAATGAGGATTCTACTAGTCAACCCCAAGTCCCCAACTAACATGGATTATGGTGTAGTAGTTGATGTTCAAGTCTCTTCAGGGGTATTCTTAAGGGTCAAATAGATATTCTGATGGTCCTAACTTAAAGGTTAAAGTTAAGAGCTGTTTCTCTGAATCTTAGCAAAGTGGTACTTTGTACTCCTCCTTCCTTGTCCATTTTATTTCTTGACCTTCTAGTGAAGACTTAATATCTGTTGCTCAGTTATAGGCTTTGGTTTACAAATGAGCGAATAAGGCGTATTGTCATGATTTATTATTGTTATTCTAGAAACAACCTCATCACTTTTGGTTATTTAGTTACTTCGTCTATGCCCAATGCCAGAACAAGGTCTGGTGTGGTTCCTCCTTTGGCAACTAGAGCTATTGCTGCTGCATGGCCACGAGAAGGTGTTACTGTTCCAGAGCACTCTGATACTTCCTCAAGACAAAATATGCAATTTCAGGTTCATGAACGAGGTACTTTGACACCCTAAAGAGCTTCTTTGCAATTGGTTTAGGATATCTGTATATGTACTGCATGTTCATTTGTTTTTGGTGTAGCTTTCAGTGTGAAAAACAATGTGTGTGCTACTTTGGCTTATTTGGTTAAGCTGACCTTCTGACTATTAGTATGAGAGAGAAGATGATATTTTATCAGATTGCTCCCTTTTGATGGCTTCTCTCCACACAAGCTTGTGTTTGAAGCTTTAGTTTTTGGAATTTTTACTCTAGTTTGAGTGTTAGTTTGCAGAACATTTATCCCACAGTGATATAGCTAAGATAGTGCTACAAGATGAAAGATTGGTTCACATATTTAAATTGGAATAAGTTCTAGATATAGCCTCTTGTATCATCATGTGGTGAATGGTTATGTACCTGGTCTTGCTCGTTGGACCACATATCACCCGTTGGACATGTATTGTAATAACAGAGGTATCTATCTTTTAATTTCTCTCTTTGGGGTGCAGGAACATCTGGCATTGCTACTACTGCAAGTGAAGAAATTCATCCCGTTAGATCTGGGCTACCATCTTCTACGACATTCATCACTCCTGTTTATAGAAGAGAGGCTCAATCTAATATCCCATCTACTCCAGCTGTTTCTGTCCCATTCAATAGGAACGCTGAACCTACCTTTTCATCTGATGCAGCTAGTCATGCAGAGGATATCCATATGGCTGACATGACCACTGAAGACATTGATGTTGCAATTAG-AAGGGAACATAATGACACTGTCCTTTCATCTTTGTCTTCCAT</genome_strand>
        <mrna_strand>AAGTAGCTGCTGGAATAAAGAGGTGTCTGAAATTGTCCATGACTGATGGCATTCAGCGAGTGTTTGGGATGGAGTACAGGCCTATAAAAGATCTCGATGTTCTAGCTCCTTCTGGACTGAAG..........................................................................................................................................................GTTGCTATCTGTAATGTTCATGTTAGGCATGGAATTCTGATGTTGGTCCCTGAAGTTATTGAAGTTCTGGGTGGGATGGTGGAAGACTTAGAAGAAGCAAGGAAGCGGCTAGTTAATGAAATAAATAAGCCACCAAGGGGGAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGGTCTGGTGTGGTTCCTCCTTTGGCAACTAGAGCTATTGCTGCTGCATGGCCACGAGAAGGTGTTACTGTTCCAGAGCACTCTGATACTTCCTCAAGACAAAATATGCAATTTCAGGTTCATGAACGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACATCTGGCATTGCTACTACTGCAAGTGAAGAAATTCATCCCGTTAGATCTGGGCTACCATCTTCTACGACATTCATCACTCCTGTTTATAGAAGAGAGGCTCAATCTAATATCCCATCTACTCCAGCTGTTTCTGTCCCATTCAATANGAACGCTGAACCTACCTTTTCATCTGATGCAGCTAGTCATGCAGAGGATATCCATATGGCTGACATGACCACTGAAGACATTGATGTTGCAATTAGAAAGGGAACAT-ATGACACTGTCCTTTCATCTTTGTCTTCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E419280" ref_strand="+" ref_description="SGN-E419280 [STM-29-G2]">
      <seq>gttaatgaaataaataagccaccagggggaaaagaacaaggtctggagtggttcctcctttggcaactagagctactggtgctgcatggccacgagaaggtgttactgttccagagcactctgatacttcctcaagacaaagtatgcattttcaggttcatgaacgaggaacatctggtattgctacttctgcaactgaagaaattcatcccattacatctgggctaccatcttctacgacattcaccactcctgtttatagaagagaggctcaatctaattttccatctactccagctgtttctgtcccattcaataggaaggttactgggcataccttttcatctgatgcagctagtcatgcagatgatatccatatggctgacatgaccaccgaaggcattgatgttccaattagaagggaacataatgaccctgtcctttcatcttcttactccatggaagtggaggaacttctgtcagatgttagaagtgaccctgccacacctgccagtagcaggagcagaggaagcgtccgtgtctctggcggtagtgtccataatgaggatgtaacaccagatacattgtctactgcagcaattgacattgatgaaattgatttggttgatgaattgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0090D09.1" temp_strand="+" temp_description="C12HBa0090D09.1  AC212766.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0090D09 upload_account_name:italy">
        <position start="17809" stop="20062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18109" g_stop="18143" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18144" i_stop="18671" i_length="528">
            <donor d_prob="0.615" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18672" g_stop="18805" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="168" r_length="134" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18806" i_stop="19296" i_length="491">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19297" g_stop="19762" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="637" r_length="469" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0090D09.1" gen_strand="+" ref_id="SGN-E419280" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0090D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E419280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18109" e_stop="18143"/>
          <exon e_start="18672" e_stop="18805"/>
          <exon e_start="19297" e_stop="19762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAATGAAATAAATAAGCCACCAAGGGGGAAAAGGTATGACGAAGGACCAAGAAAACATTTACTGTTTGAACCTAATTACCAAATTCTGATATTGTTGGTAGATGCCTTATACAAGTGTTGAATTCACTTGAATGGCAGAGGTTGATGCTCAGTGCTAGCATTAGAGGACCCTGACTGACTGTATATTTGAATGTAATCAAATGAGGATTCTACTAGTCAACCCCAAGTCCCCAACTAACATGGATTATGGTGTAGTAGTTGATGTTCAAGTCTCTTCAGGGGTATTCTTAAGGGTCAAATAGATATTCTGATGGTCCTAACTTAAAGGTTAAAGTTAAGAGCTGTTTCTCTGAATCTTAGCAAAGTGGTACTTTGTACTCCTCCTTCCTTGTCCATTTTATTTCTTGACCTTCTAGTGAAGACTTAATATCTGTTGCTCAGTTATAGGCTTTGGTTTACAAATGAGCGAATAAGGCGTATTGTCATGATTTATTATTGTTATTCTAGAAACAACCTCATCACTTTTGGTTATTTAGTTACTTCGTCTATGCCCAATGCCAGAACAAGGTCTGGTGTGGTTCCTCCTTTGGCAACTAGAGCTATTGCTGCTGCATGGCCACGAGAAGGTGTTACTGTTCCAGAGCACTCTGATACTTCCTCAAGACAAAATATGCAATTTCAGGTTCATGAACGAGGTACTTTGACACCCTAAAGAGCTTCTTTGCAATTGGTTTAGGATATCTGTATATGTACTGCATGTTCATTTGTTTTTGGTGTAGCTTTCAGTGTGAAAAACAATGTGTGTGCTACTTTGGCTTATTTGGTTAAGCTGACCTTCTGACTATTAGTATGAGAGAGAAGATGATATTTTATCAGATTGCTCCCTTTTGATGGCTTCTCTCCACACAAGCTTGTGTTTGAAGCTTTAGTTTTTGGAATTTTTACTCTAGTTTGAGTGTTAGTTTGCAGAACATTTATCCCACAGTGATATAGCTAAGATAGTGCTACAAGATGAAAGATTGGTTCACATATTTAAATTGGAATAAGTTCTAGATATAGCCTCTTGTATCATCATGTGGTGAATGGTTATGTACCTGGTCTTGCTCGTTGGACCACATATCACCCGTTGGACATGTATTGTAATAACAGAGGTATCTATCTTTTAATTTCTCTCTTTGGGGTGCAGGAACATCTGGCATTGCTACTACTGCAAGTGAAGAAATTCATCCCGTTAGATCTGGGCTACCATCTTCTACGACATTCATCACTCCTGTTTATAGAAGAGAGGCTCAATCTAATATCCCATCTACTCCAGCTGTTTCTGTCCCATTCAATAGGAACG---CTGAACCTACCTTTTCATCTGATGCAGCTAGTCATGCAGAGGATATCCATATGGCTGACATGACCACTGAAGACATTGATGTTGCAATTAGAAGGGAACATAATGACACTGTCCTTTCATCTTTGTCTTCCATGGATGTGGAGGAACTTTTGTCAGATGTTAGAAGTGACCCTACCACACCTGCCAGTAGCAGGACCAGAGGAAGCGTTTGTGTGTCTAGCGGTAGTTTCCATAATGAAGATGTAACACCAGATACATTGTCTACTGCAGCAATTGACGTTGATCAAATTGATTTGGTTGATGAATTGGA</genome_strand>
        <mrna_strand>GTTAATGAAATAAATAAGCCACC-AGGGGGAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGGTCTGGAGTGGTTCCTCCTTTGGCAACTAGAGCTACTGGTGCTGCATGGCCACGAGAAGGTGTTACTGTTCCAGAGCACTCTGATACTTCCTCAAGACAAAGTATGCATTTTCAGGTTCATGAACGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACATCTGGTATTGCTACTTCTGCAACTGAAGAAATTCATCCCATTACATCTGGGCTACCATCTTCTACGACATTCACCACTCCTGTTTATAGAAGAGAGGCTCAATCTAATTTTCCATCTACTCCAGCTGTTTCTGTCCCATTCAATAGGAAGGTTACTGGGCATACCTTTTCATCTGATGCAGCTAGTCATGCAGATGATATCCATATGGCTGACATGACCACCGAAGGCATTGATGTTCCAATTAGAAGGGAACATAATGACCCTGTCCTTTCATCTTCTTACTCCATGGAAGTGGAGGAACTTCTGTCAGATGTTAGAAGTGACCCTGCCACACCTGCCAGTAGCAGGAGCAGAGGAAGCGTCCGTGTCTCTGGCGGTAGTGTCCATAATGAGGATGTAACACCAGATACATTGTCTACTGCAGCAATTGACATTGATGAAATTGATTTGGTTGATGAATTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443800" ref_strand="+" ref_description="SGN-E443800 [cSTA-40-I11]">
      <seq>gttaatgaaataaataagccaccaagggggaaaagaacaaggtctggagtggttcctcctttggcaactagagctactggtgctgcatggccacgagaaggtgttactgttccagagcactctgatacttcctcaagacaaagtatgcattttcaggttcatgaacgaggaacatctggtattgctacttctgcaactgaagaaattcatcccattacatctgggctaccatcttctacgacattcaccactcctgtttatagaagagaggctcaatctaattttccatctactccagctgtttctgtcccattcaataggaaggttactgggcataccttttcatctgatgcagctagtcatgcagatgatatccatatggctgacatgaccaccgaaggcattgatgttccaattagaagggaacataatgaccctgtcctttcatcttcttactccatggaagtggaggaacttctgtcagatgttagaagtgaccctgccacacctgccagtagcaggagcagaggaagcgtccgtgtctctggcggtagtgtccataatgaggatgtaacaccagatacattgtctactgcagcaattgacattgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0090D09.1" temp_strand="+" temp_description="C12HBa0090D09.1  AC212766.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0090D09 upload_account_name:italy">
        <position start="17809" stop="20036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18109" g_stop="18143" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18144" i_stop="18671" i_length="528">
            <donor d_prob="0.615" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18672" g_stop="18805" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="169" r_length="134" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18806" i_stop="19296" i_length="491">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19297" g_stop="19737" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="613" r_length="444" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0090D09.1" gen_strand="+" ref_id="SGN-E443800" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0090D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E443800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18109" e_stop="18143"/>
          <exon e_start="18672" e_stop="18805"/>
          <exon e_start="19297" e_stop="19737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAATGAAATAAATAAGCCACCAAGGGGGAAAAGGTATGACGAAGGACCAAGAAAACATTTACTGTTTGAACCTAATTACCAAATTCTGATATTGTTGGTAGATGCCTTATACAAGTGTTGAATTCACTTGAATGGCAGAGGTTGATGCTCAGTGCTAGCATTAGAGGACCCTGACTGACTGTATATTTGAATGTAATCAAATGAGGATTCTACTAGTCAACCCCAAGTCCCCAACTAACATGGATTATGGTGTAGTAGTTGATGTTCAAGTCTCTTCAGGGGTATTCTTAAGGGTCAAATAGATATTCTGATGGTCCTAACTTAAAGGTTAAAGTTAAGAGCTGTTTCTCTGAATCTTAGCAAAGTGGTACTTTGTACTCCTCCTTCCTTGTCCATTTTATTTCTTGACCTTCTAGTGAAGACTTAATATCTGTTGCTCAGTTATAGGCTTTGGTTTACAAATGAGCGAATAAGGCGTATTGTCATGATTTATTATTGTTATTCTAGAAACAACCTCATCACTTTTGGTTATTTAGTTACTTCGTCTATGCCCAATGCCAGAACAAGGTCTGGTGTGGTTCCTCCTTTGGCAACTAGAGCTATTGCTGCTGCATGGCCACGAGAAGGTGTTACTGTTCCAGAGCACTCTGATACTTCCTCAAGACAAAATATGCAATTTCAGGTTCATGAACGAGGTACTTTGACACCCTAAAGAGCTTCTTTGCAATTGGTTTAGGATATCTGTATATGTACTGCATGTTCATTTGTTTTTGGTGTAGCTTTCAGTGTGAAAAACAATGTGTGTGCTACTTTGGCTTATTTGGTTAAGCTGACCTTCTGACTATTAGTATGAGAGAGAAGATGATATTTTATCAGATTGCTCCCTTTTGATGGCTTCTCTCCACACAAGCTTGTGTTTGAAGCTTTAGTTTTTGGAATTTTTACTCTAGTTTGAGTGTTAGTTTGCAGAACATTTATCCCACAGTGATATAGCTAAGATAGTGCTACAAGATGAAAGATTGGTTCACATATTTAAATTGGAATAAGTTCTAGATATAGCCTCTTGTATCATCATGTGGTGAATGGTTATGTACCTGGTCTTGCTCGTTGGACCACATATCACCCGTTGGACATGTATTGTAATAACAGAGGTATCTATCTTTTAATTTCTCTCTTTGGGGTGCAGGAACATCTGGCATTGCTACTACTGCAAGTGAAGAAATTCATCCCGTTAGATCTGGGCTACCATCTTCTACGACATTCATCACTCCTGTTTATAGAAGAGAGGCTCAATCTAATATCCCATCTACTCCAGCTGTTTCTGTCCCATTCAATAGGAACG---CTGAACCTACCTTTTCATCTGATGCAGCTAGTCATGCAGAGGATATCCATATGGCTGACATGACCACTGAAGACATTGATGTTGCAATTAGAAGGGAACATAATGACACTGTCCTTTCATCTTTGTCTTCCATGGATGTGGAGGAACTTTTGTCAGATGTTAGAAGTGACCCTACCACACCTGCCAGTAGCAGGACCAGAGGAAGCGTTTGTGTGTCTAGCGGTAGTTTCCATAATGAAGATGTAACACCAGATACATTGTCTACTGCAGCAATTGACGTTGATC</genome_strand>
        <mrna_strand>GTTAATGAAATAAATAAGCCACCAAGGGGGAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGGTCTGGAGTGGTTCCTCCTTTGGCAACTAGAGCTACTGGTGCTGCATGGCCACGAGAAGGTGTTACTGTTCCAGAGCACTCTGATACTTCCTCAAGACAAAGTATGCATTTTCAGGTTCATGAACGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACATCTGGTATTGCTACTTCTGCAACTGAAGAAATTCATCCCATTACATCTGGGCTACCATCTTCTACGACATTCACCACTCCTGTTTATAGAAGAGAGGCTCAATCTAATTTTCCATCTACTCCAGCTGTTTCTGTCCCATTCAATAGGAAGGTTACTGGGCATACCTTTTCATCTGATGCAGCTAGTCATGCAGATGATATCCATATGGCTGACATGACCACCGAAGGCATTGATGTTCCAATTAGAAGGGAACATAATGACCCTGTCCTTTCATCTTCTTACTCCATGGAAGTGGAGGAACTTCTGTCAGATGTTAGAAGTGACCCTGCCACACCTGCCAGTAGCAGGAGCAGAGGAAGCGTCCGTGTCTCTGGCGGTAGTGTCCATAATGAGGATGTAACACCAGATACATTGTCTACTGCAGCAATTGACATTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444569" ref_strand="+" ref_description="SGN-E444569 [cSTA-43-M18]">
      <seq>gttaatgaaataaataagccaccaagggggaaaagaacaaggtctggagtggttcctcctttggcaactagagctactggtgctgcatggccacgagaaggtgttactgttccagagcactctgatacttcctcaagacaaagtatgcattttcaggttcatgaacgaggaacatctggtattgctacttctgcaactgaagaaattcatcccattacatctgggctaccatcttctacgacattcaccactcctgtttatagaagagaggctcaatctaattttccatctactccagctgtttctgtcccattcaataggaaggttactgggcataccttttcatctgatgcagctagtcatgcagatgatatccatatggctgacatgaccaccgaaggcattgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0090D09.1" temp_strand="+" temp_description="C12HBa0090D09.1  AC212766.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0090D09 upload_account_name:italy">
        <position start="17809" stop="19834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18109" g_stop="18143" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18144" i_stop="18671" i_length="528">
            <donor d_prob="0.615" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18672" g_stop="18805" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="169" r_length="134" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18806" i_stop="19296" i_length="491">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19297" g_stop="19534" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="410" r_length="241" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0090D09.1" gen_strand="+" ref_id="SGN-E444569" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0090D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E444569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18109" e_stop="18143"/>
          <exon e_start="18672" e_stop="18805"/>
          <exon e_start="19297" e_stop="19534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAATGAAATAAATAAGCCACCAAGGGGGAAAAGGTATGACGAAGGACCAAGAAAACATTTACTGTTTGAACCTAATTACCAAATTCTGATATTGTTGGTAGATGCCTTATACAAGTGTTGAATTCACTTGAATGGCAGAGGTTGATGCTCAGTGCTAGCATTAGAGGACCCTGACTGACTGTATATTTGAATGTAATCAAATGAGGATTCTACTAGTCAACCCCAAGTCCCCAACTAACATGGATTATGGTGTAGTAGTTGATGTTCAAGTCTCTTCAGGGGTATTCTTAAGGGTCAAATAGATATTCTGATGGTCCTAACTTAAAGGTTAAAGTTAAGAGCTGTTTCTCTGAATCTTAGCAAAGTGGTACTTTGTACTCCTCCTTCCTTGTCCATTTTATTTCTTGACCTTCTAGTGAAGACTTAATATCTGTTGCTCAGTTATAGGCTTTGGTTTACAAATGAGCGAATAAGGCGTATTGTCATGATTTATTATTGTTATTCTAGAAACAACCTCATCACTTTTGGTTATTTAGTTACTTCGTCTATGCCCAATGCCAGAACAAGGTCTGGTGTGGTTCCTCCTTTGGCAACTAGAGCTATTGCTGCTGCATGGCCACGAGAAGGTGTTACTGTTCCAGAGCACTCTGATACTTCCTCAAGACAAAATATGCAATTTCAGGTTCATGAACGAGGTACTTTGACACCCTAAAGAGCTTCTTTGCAATTGGTTTAGGATATCTGTATATGTACTGCATGTTCATTTGTTTTTGGTGTAGCTTTCAGTGTGAAAAACAATGTGTGTGCTACTTTGGCTTATTTGGTTAAGCTGACCTTCTGACTATTAGTATGAGAGAGAAGATGATATTTTATCAGATTGCTCCCTTTTGATGGCTTCTCTCCACACAAGCTTGTGTTTGAAGCTTTAGTTTTTGGAATTTTTACTCTAGTTTGAGTGTTAGTTTGCAGAACATTTATCCCACAGTGATATAGCTAAGATAGTGCTACAAGATGAAAGATTGGTTCACATATTTAAATTGGAATAAGTTCTAGATATAGCCTCTTGTATCATCATGTGGTGAATGGTTATGTACCTGGTCTTGCTCGTTGGACCACATATCACCCGTTGGACATGTATTGTAATAACAGAGGTATCTATCTTTTAATTTCTCTCTTTGGGGTGCAGGAACATCTGGCATTGCTACTACTGCAAGTGAAGAAATTCATCCCGTTAGATCTGGGCTACCATCTTCTACGACATTCATCACTCCTGTTTATAGAAGAGAGGCTCAATCTAATATCCCATCTACTCCAGCTGTTTCTGTCCCATTCAATAGGAACG---CTGAACCTACCTTTTCATCTGATGCAGCTAGTCATGCAGAGGATATCCATATGGCTGACATGACCACTGAAGACATTGATGT</genome_strand>
        <mrna_strand>GTTAATGAAATAAATAAGCCACCAAGGGGGAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGGTCTGGAGTGGTTCCTCCTTTGGCAACTAGAGCTACTGGTGCTGCATGGCCACGAGAAGGTGTTACTGTTCCAGAGCACTCTGATACTTCCTCAAGACAAAGTATGCATTTTCAGGTTCATGAACGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACATCTGGTATTGCTACTTCTGCAACTGAAGAAATTCATCCCATTACATCTGGGCTACCATCTTCTACGACATTCACCACTCCTGTTTATAGAAGAGAGGCTCAATCTAATTTTCCATCTACTCCAGCTGTTTCTGTCCCATTCAATAGGAAGGTTACTGGGCATACCTTTTCATCTGATGCAGCTAGTCATGCAGATGATATCCATATGGCTGACATGACCACCGAAGGCATTGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273239" ref_strand="+" ref_description="SGN-E273239 [cLEM-24-M17]">
      <seq>ggttaaagttaagagctgtttctctgaaccttagcaaagtggtactttgtcctcctccttcctcgtccattttatttcttgaccttctagtgaagtcttaatatctgttgctcagttataggatttggtttacaaatgagtgaataaggtgtattgtcatgatttattagtgttatgctagaaacaacctcatcacttttggttatttagttacgtcgtctatgcccaatgccagaacaaggtctggcgtggttcctcctttggcaactagagctaccgctgctgcatggccacgagaaggtgttactgttccagagcactctgatacttcctcaagacaaaatatgcattttcaggttcatgaacgaggaacatctggcagtgctactactgcaactgaagaaattcatcccgttacatctgggctaccatattctacgtcattcaccactcctgtttatagaagagaggctcaatctaatttcccatctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0090D09.1" temp_strand="+" temp_description="C12HBa0090D09.1  AC212766.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0090D09 upload_account_name:italy">
        <position start="18137" stop="19721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18437" g_stop="18805" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18806" i_stop="19296" i_length="491">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19297" g_stop="19421" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="494" r_length="125" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0090D09.1" gen_strand="+" ref_id="SGN-E273239" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0090D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18437" e_stop="18805"/>
          <exon e_start="19297" e_stop="19421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTAAAGTTAAGAGCTGTTTCTCTGAATCTTAGCAAAGTGGTACTTTGTACTCCTCCTTCCTTGTCCATTTTATTTCTTGACCTTCTAGTGAAGACTTAATATCTGTTGCTCAGTTATAGGCTTTGGTTTACAAATGAGCGAATAAGGCGTATTGTCATGATTTATTATTGTTATTCTAGAAACAACCTCATCACTTTTGGTTATTTAGTTACTTCGTCTATGCCCAATGCCAGAACAAGGTCTGGTGTGGTTCCTCCTTTGGCAACTAGAGCTATTGCTGCTGCATGGCCACGAGAAGGTGTTACTGTTCCAGAGCACTCTGATACTTCCTCAAGACAAAATATGCAATTTCAGGTTCATGAACGAGGTACTTTGACACCCTAAAGAGCTTCTTTGCAATTGGTTTAGGATATCTGTATATGTACTGCATGTTCATTTGTTTTTGGTGTAGCTTTCAGTGTGAAAAACAATGTGTGTGCTACTTTGGCTTATTTGGTTAAGCTGACCTTCTGACTATTAGTATGAGAGAGAAGATGATATTTTATCAGATTGCTCCCTTTTGATGGCTTCTCTCCACACAAGCTTGTGTTTGAAGCTTTAGTTTTTGGAATTTTTACTCTAGTTTGAGTGTTAGTTTGCAGAACATTTATCCCACAGTGATATAGCTAAGATAGTGCTACAAGATGAAAGATTGGTTCACATATTTAAATTGGAATAAGTTCTAGATATAGCCTCTTGTATCATCATGTGGTGAATGGTTATGTACCTGGTCTTGCTCGTTGGACCACATATCACCCGTTGGACATGTATTGTAATAACAGAGGTATCTATCTTTTAATTTCTCTCTTTGGGGTGCAGGAACATCTGGCATTGCTACTACTGCAAGTGAAGAAATTCATCCCGTTAGATCTGGGCTACCATCTTCTACGACATTCATCACTCCTGTTTATAGAAGAGAGGCTCAATCTAATATCCCATCTACT</genome_strand>
        <mrna_strand>GGTTAAAGTTAAGAGCTGTTTCTCTGAACCTTAGCAAAGTGGTACTTTGTCCTCCTCCTTCCTCGTCCATTTTATTTCTTGACCTTCTAGTGAAGTCTTAATATCTGTTGCTCAGTTATAGGATTTGGTTTACAAATGAGTGAATAAGGTGTATTGTCATGATTTATTAGTGTTATGCTAGAAACAACCTCATCACTTTTGGTTATTTAGTTACGTCGTCTATGCCCAATGCCAGAACAAGGTCTGGCGTGGTTCCTCCTTTGGCAACTAGAGCTACCGCTGCTGCATGGCCACGAGAAGGTGTTACTGTTCCAGAGCACTCTGATACTTCCTCAAGACAAAATATGCATTTTCAGGTTCATGAACGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACATCTGGCAGTGCTACTACTGCAACTGAAGAAATTCATCCCGTTACATCTGGGCTACCATATTCTACGTCATTCACCACTCCTGTTTATAGAAGAGAGGCTCAATCTAATTTCCCATCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302995" ref_strand="+" ref_description="SGN-E302995 [cLEW-26-M19]">
      <seq>aaagaacaggtctggtgtggttcctcctttggcaactaaagctatagctgctgcatggcggggagaaggtgttactgttccagagcactctgatacttcctcaagacaaaatatgcaatttcaggttcatgaacgaggaacatctggcattgctactactgcaagtgaaaaaattcatcccgttagatctgggctaccatcttctacgacattcatcactcctgtttatagaagagaggctcaatctaatatcccatctactccagctgtttctgtcccattcaataggaacgctgaacctaccttttcatctgatgcagctagtcatgcagaggatatccatatggctgacatgaccactgaagacattgatgttgcaattagaagggaacataatgacactgtcctttcatctttgtcttccatggatgtggaggaacttttgtcagatgttagaagtgaccctaccacacctgccagtagcaggaccagaagaagcgtttgtgtgtctagcggtagtttccataatgaagatgtaacaccagatacattgtctactgcagcaattgacgttgatcaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0090D09.1" temp_strand="+" temp_description="C12HBa0090D09.1  AC212766.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0090D09 upload_account_name:italy">
        <position start="18370" stop="20042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18668" g_stop="18805" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18806" i_stop="19296" i_length="491">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19297" g_stop="19742" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="583" r_length="446" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0090D09.1" gen_strand="+" ref_id="SGN-E302995" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0090D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302995" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18668" e_stop="18805"/>
          <exon e_start="19297" e_stop="19742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGAACAAGGTCTGGTGTGGTTCCTCCTTTGGCAACTAGAGCTATTGCTGCTGCATGGCCACGAGAAGGTGTTACTGTTCCAGAGCACTCTGATACTTCCTCAAGACAAAATATGCAATTTCAGGTTCATGAACGAGGTACTTTGACACCCTAAAGAGCTTCTTTGCAATTGGTTTAGGATATCTGTATATGTACTGCATGTTCATTTGTTTTTGGTGTAGCTTTCAGTGTGAAAAACAATGTGTGTGCTACTTTGGCTTATTTGGTTAAGCTGACCTTCTGACTATTAGTATGAGAGAGAAGATGATATTTTATCAGATTGCTCCCTTTTGATGGCTTCTCTCCACACAAGCTTGTGTTTGAAGCTTTAGTTTTTGGAATTTTTACTCTAGTTTGAGTGTTAGTTTGCAGAACATTTATCCCACAGTGATATAGCTAAGATAGTGCTACAAGATGAAAGATTGGTTCACATATTTAAATTGGAATAAGTTCTAGATATAGCCTCTTGTATCATCATGTGGTGAATGGTTATGTACCTGGTCTTGCTCGTTGGACCACATATCACCCGTTGGACATGTATTGTAATAACAGAGGTATCTATCTTTTAATTTCTCTCTTTGGGGTGCAGGAACATCTGGCATTGCTACTACTGCAAGTGAAGAAATTCATCCCGTTAGATCTGGGCTACCATCTTCTACGACATTCATCACTCCTGTTTATAGAAGAGAGGCTCAATCTAATATCCCATCTACTCCAGCTGTTTCTGTCCCATTCAATAGGAACGCTGAACCTACCTTTTCATCTGATGCAGCTAGTCATGCAGAGGATATCCATATGGCTGACATGACCACTGAAGACATTGATGTTGCAATTAGAAGGGAACATAATGACACTGTCCTTTCATCTTTGTCTTCCATGGATGTGGAGGAACTTTTGTCAGATGTTAGAAGTGACCCTACCACACCTGCCAGTAGCAGGACCAGAGGAAGCGTTTGTGTGTCTAGCGGTAGTTTCCATAATGAAGATGTAACACCAGATACATTGTCTACTGCAGCAATTGACGTTGATCAAATT</genome_strand>
        <mrna_strand>AAAGAAC-AGGTCTGGTGTGGTTCCTCCTTTGGCAACTAAAGCTATAGCTGCTGCATGGCGGGGAGAAGGTGTTACTGTTCCAGAGCACTCTGATACTTCCTCAAGACAAAATATGCAATTTCAGGTTCATGAACGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACATCTGGCATTGCTACTACTGCAAGTGAAAAAATTCATCCCGTTAGATCTGGGCTACCATCTTCTACGACATTCATCACTCCTGTTTATAGAAGAGAGGCTCAATCTAATATCCCATCTACTCCAGCTGTTTCTGTCCCATTCAATAGGAACGCTGAACCTACCTTTTCATCTGATGCAGCTAGTCATGCAGAGGATATCCATATGGCTGACATGACCACTGAAGACATTGATGTTGCAATTAGAAGGGAACATAATGACACTGTCCTTTCATCTTTGTCTTCCATGGATGTGGAGGAACTTTTGTCAGATGTTAGAAGTGACCCTACCACACCTGCCAGTAGCAGGACCAGAAGAAGCGTTTGTGTGTCTAGCGGTAGTTTCCATAATGAAGATGTAACACCAGATACATTGTCTACTGCAGCAATTGACGTTGATCAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443811" ref_strand="+" ref_description="SGN-E443811 [cSTA-40-K11]">
      <seq>gttaatgaaatatttaagctttcaagggggaaaagaacaaggtctggagtggttccttctttggcaactagagctactggtgctgcatggccacgagatggaggaactgttccacagcactctgatactttctcaagacaaagtatgcattttcaggttcatgaacgaggaacatctggtattgctacttctgcaactgaagaaattcatcccattacatctgggctaccatcttctactacattcaccactcctgtttatagaagagaggctcaatctaattttccatctactccagctgtttctgtcccattcaataagaaggttactgggcataccttttcatctgatgcagctagtcatgcagatgatatccatatggctgacatgaccaccgaaggcattgatgttccaattagaagggaacataatgaccctgtcctttcatcttcttactccatggaagtggaggaacttctgtcagatgttagaagtgaccctgtcacacctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0090D09.1" temp_strand="+" temp_description="C12HBa0090D09.1  AC212766.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0090D09 upload_account_name:italy">
        <position start="18370" stop="19936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18672" g_stop="18805" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="169" r_length="134" r_score="0.910"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18806" i_stop="19296" i_length="491">
            <donor d_prob="0.979" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19297" g_stop="19636" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="512" r_length="343" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0090D09.1" gen_strand="+" ref_id="SGN-E443811" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0090D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E443811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18672" e_stop="18805"/>
          <exon e_start="19297" e_stop="19636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAGGTCTGGTGTGGTTCCTCCTTTGGCAACTAGAGCTATTGCTGCTGCATGGCCACGAGAAGGTGTTACTGTTCCAGAGCACTCTGATACTTCCTCAAGACAAAATATGCAATTTCAGGTTCATGAACGAGGTACTTTGACACCCTAAAGAGCTTCTTTGCAATTGGTTTAGGATATCTGTATATGTACTGCATGTTCATTTGTTTTTGGTGTAGCTTTCAGTGTGAAAAACAATGTGTGTGCTACTTTGGCTTATTTGGTTAAGCTGACCTTCTGACTATTAGTATGAGAGAGAAGATGATATTTTATCAGATTGCTCCCTTTTGATGGCTTCTCTCCACACAAGCTTGTGTTTGAAGCTTTAGTTTTTGGAATTTTTACTCTAGTTTGAGTGTTAGTTTGCAGAACATTTATCCCACAGTGATATAGCTAAGATAGTGCTACAAGATGAAAGATTGGTTCACATATTTAAATTGGAATAAGTTCTAGATATAGCCTCTTGTATCATCATGTGGTGAATGGTTATGTACCTGGTCTTGCTCGTTGGACCACATATCACCCGTTGGACATGTATTGTAATAACAGAGGTATCTATCTTTTAATTTCTCTCTTTGGGGTGCAGGAACATCTGGCATTGCTACTACTGCAAGTGAAGAAATTCATCCCGTTAGATCTGGGCTACCATCTTCTACGACATTCATCACTCCTGTTTATAGAAGAGAGGCTCAATCTAATATCCCATCTACTCCAGCTGTTTCTGTCCCATTCAATAGGAACG---CTGAACCTACCTTTTCATCTGATGCAGCTAGTCATGCAGAGGATATCCATATGGCTGACATGACCACTGAAGACATTGATGTTGCAATTAGAAGGGAACATAATGACACTGTCCTTTCATCTTTGTCTTCCATGGATGTGGAGGAACTTTTGTCAGATGTTAGAAGTGACCCTACCACACCTGC</genome_strand>
        <mrna_strand>AACAAGGTCTGGAGTGGTTCCTTCTTTGGCAACTAGAGCTACTGGTGCTGCATGGCCACGAGATGGAGGAACTGTTCCACAGCACTCTGATACTTTCTCAAGACAAAGTATGCATTTTCAGGTTCATGAACGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACATCTGGTATTGCTACTTCTGCAACTGAAGAAATTCATCCCATTACATCTGGGCTACCATCTTCTACTACATTCACCACTCCTGTTTATAGAAGAGAGGCTCAATCTAATTTTCCATCTACTCCAGCTGTTTCTGTCCCATTCAATAAGAAGGTTACTGGGCATACCTTTTCATCTGATGCAGCTAGTCATGCAGATGATATCCATATGGCTGACATGACCACCGAAGGCATTGATGTTCCAATTAGAAGGGAACATAATGACCCTGTCCTTTCATCTTCTTACTCCATGGAAGTGGAGGAACTTCTGTCAGATGTTAGAAGTGACCCTGTCACACCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231571" ref_strand="+" ref_description="SGN-E231571 [cLED-4-F12]">
      <seq>ctattgctgctgcatggccacgagaaggtgttactgttccagagcactctgatacttcctcaagacaaaatatgcaatttcaggttcatgaacgaggaacatctggcattgctactactgcaagtgaagaaattcatcccgttagatctgggctaccatcttctacgacattcatcactcctgtttatagaagagaggctcaatctaatatcccatctactccagctgtttctgtcccattcaataggaacgctgaacctaccttttcatctgatgcagctagtcatgcagaggatatccatatggctgacatgaccactgaagacattgatgttgcaattagaagggaacataatgacactgtcctttcatctttgtcttccatggatgtggaggaacttttgtcagatgttagaagtgaccctaccacacctgccagtagcaggaccagaggaagcgtttgtgtgtctagcggtagtttccataatgaagatgtaacaccagatacattgtctactgcagcaattgacgttgatcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0090D09.1" temp_strand="+" temp_description="C12HBa0090D09.1  AC212766.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0090D09 upload_account_name:italy">
        <position start="18410" stop="20040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18710" g_stop="18805" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18806" i_stop="19296" i_length="491">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19297" g_stop="19740" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="540" r_length="444" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0090D09.1" gen_strand="+" ref_id="SGN-E231571" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0090D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18710" e_stop="18805"/>
          <exon e_start="19297" e_stop="19740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTGCTGCTGCATGGCCACGAGAAGGTGTTACTGTTCCAGAGCACTCTGATACTTCCTCAAGACAAAATATGCAATTTCAGGTTCATGAACGAGGTACTTTGACACCCTAAAGAGCTTCTTTGCAATTGGTTTAGGATATCTGTATATGTACTGCATGTTCATTTGTTTTTGGTGTAGCTTTCAGTGTGAAAAACAATGTGTGTGCTACTTTGGCTTATTTGGTTAAGCTGACCTTCTGACTATTAGTATGAGAGAGAAGATGATATTTTATCAGATTGCTCCCTTTTGATGGCTTCTCTCCACACAAGCTTGTGTTTGAAGCTTTAGTTTTTGGAATTTTTACTCTAGTTTGAGTGTTAGTTTGCAGAACATTTATCCCACAGTGATATAGCTAAGATAGTGCTACAAGATGAAAGATTGGTTCACATATTTAAATTGGAATAAGTTCTAGATATAGCCTCTTGTATCATCATGTGGTGAATGGTTATGTACCTGGTCTTGCTCGTTGGACCACATATCACCCGTTGGACATGTATTGTAATAACAGAGGTATCTATCTTTTAATTTCTCTCTTTGGGGTGCAGGAACATCTGGCATTGCTACTACTGCAAGTGAAGAAATTCATCCCGTTAGATCTGGGCTACCATCTTCTACGACATTCATCACTCCTGTTTATAGAAGAGAGGCTCAATCTAATATCCCATCTACTCCAGCTGTTTCTGTCCCATTCAATAGGAACGCTGAACCTACCTTTTCATCTGATGCAGCTAGTCATGCAGAGGATATCCATATGGCTGACATGACCACTGAAGACATTGATGTTGCAATTAGAAGGGAACATAATGACACTGTCCTTTCATCTTTGTCTTCCATGGATGTGGAGGAACTTTTGTCAGATGTTAGAAGTGACCCTACCACACCTGCCAGTAGCAGGACCAGAGGAAGCGTTTGTGTGTCTAGCGGTAGTTTCCATAATGAAGATGTAACACCAGATACATTGTCTACTGCAGCAATTGACGTTGATCAAA</genome_strand>
        <mrna_strand>CTATTGCTGCTGCATGGCCACGAGAAGGTGTTACTGTTCCAGAGCACTCTGATACTTCCTCAAGACAAAATATGCAATTTCAGGTTCATGAACGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACATCTGGCATTGCTACTACTGCAAGTGAAGAAATTCATCCCGTTAGATCTGGGCTACCATCTTCTACGACATTCATCACTCCTGTTTATAGAAGAGAGGCTCAATCTAATATCCCATCTACTCCAGCTGTTTCTGTCCCATTCAATAGGAACGCTGAACCTACCTTTTCATCTGATGCAGCTAGTCATGCAGAGGATATCCATATGGCTGACATGACCACTGAAGACATTGATGTTGCAATTAGAAGGGAACATAATGACACTGTCCTTTCATCTTTGTCTTCCATGGATGTGGAGGAACTTTTGTCAGATGTTAGAAGTGACCCTACCACACCTGCCAGTAGCAGGACCAGAGGAAGCGTTTGTGTGTCTAGCGGTAGTTTCCATAATGAAGATGTAACACCAGATACATTGTCTACTGCAGCAATTGACGTTGATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345583" ref_strand="+" ref_description="SGN-E345583 [cTOF-18-C15]">
      <seq>attttcaggttcatgaacgaggaacatctggcagtgctactactgcaactgaagaaattcatcccgttacatctgggctaccatattctacgtcattcaccactcctgtttatagaagagaggctcaatctaatttcccatctactccagctgtttctgtcccattcaataggaacactggacctaccttttcatctgatgcagctagtcatgcagaggatatccatatggctgacatgaccaccgaaggcattgatgttccaattagaagggaacataatgaccctgtcctttcatcttcttcttccatggaagtggaggaacttttgtcagatattagaagtgaccctgccacacctgccagtagcaggagcagaggaagcattcgtgtctctagtgatagtttccattatgaagatgtaacaccagatacattgtctactgcagcaattgacgttgatgaaattgatttggttgatgaattggaccatccatatatactttctggagcaaaggaaaaccctttcacttacttagctagtctgtcagctaagcaggctggtatgcatggcagtgcttccactgttacaggaaaaattaagtgctttcttactggtgtgaagggatttcagtataaacagagtagtaaatacgagcttcgggtttatgttgatgatggcagcctaatctctgagatccttatagatcatgctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0090D09.1" temp_strand="+" temp_description="C12HBa0090D09.1  AC212766.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0090D09 upload_account_name:italy">
        <position start="18487" stop="20819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18785" g_stop="18805" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18806" i_stop="19296" i_length="491">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19297" g_stop="19877" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="602" r_length="581" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19878" i_stop="20406" i_length="529">
            <donor d_prob="0.969" d_score="0.96"/>
            <acceptor a_prob="0.926" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20407" g_stop="20517" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="713" r_length="111" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0090D09.1" gen_strand="+" ref_id="SGN-E345583" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0090D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18785" e_stop="18805"/>
          <exon e_start="19297" e_stop="19877"/>
          <exon e_start="20407" e_stop="20517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCAGGTTCATGAACGAGGTACTTTGACACCCTAAAGAGCTTCTTTGCAATTGGTTTAGGATATCTGTATATGTACTGCATGTTCATTTGTTTTTGGTGTAGCTTTCAGTGTGAAAAACAATGTGTGTGCTACTTTGGCTTATTTGGTTAAGCTGACCTTCTGACTATTAGTATGAGAGAGAAGATGATATTTTATCAGATTGCTCCCTTTTGATGGCTTCTCTCCACACAAGCTTGTGTTTGAAGCTTTAGTTTTTGGAATTTTTACTCTAGTTTGAGTGTTAGTTTGCAGAACATTTATCCCACAGTGATATAGCTAAGATAGTGCTACAAGATGAAAGATTGGTTCACATATTTAAATTGGAATAAGTTCTAGATATAGCCTCTTGTATCATCATGTGGTGAATGGTTATGTACCTGGTCTTGCTCGTTGGACCACATATCACCCGTTGGACATGTATTGTAATAACAGAGGTATCTATCTTTTAATTTCTCTCTTTGGGGTGCAGGAACATCTGGCATTGCTACTACTGCAAGTGAAGAAATTCATCCCGTTAGATCTGGGCTACCATCTTCTACGACATTCATCACTCCTGTTTATAGAAGAGAGGCTCAATCTAATATCCCATCTACTCCAGCTGTTTCTGTCCCATTCAATAGGAACGCTGAACCTACCTTTTCATCTGATGCAGCTAGTCATGCAGAGGATATCCATATGGCTGACATGACCACTGAAGACATTGATGTTGCAATTAGAAGGGAACATAATGACACTGTCCTTTCATCTTTGTCTTCCATGGATGTGGAGGAACTTTTGTCAGATGTTAGAAGTGACCCTACCACACCTGCCAGTAGCAGGACCAGAGGAAGCGTTTGTGTGTCTAGCGGTAGTTTCCATAATGAAGATGTAACACCAGATACATTGTCTACTGCAGCAATTGACGTTGATCAAATTGATTTGGTTGATGAATTGGACCATCCATATATACTTTCTGGAGCGAAGGAAAACCCTTTCACTTACTTAGCTAGTCTGTCAGCTAAGCAGGCTGGTGTGAATGGCAGTGCTTCCACTGTTACAGGAAAAATTAAGGTAACTTTTGCTCTCCCTCGTGATATCAACTTCTCTGATGCTTCCATGTAGAAAATTCACTGCGTCCTTTCTATCTTACCCTTGTTAATTGGGTCTTTTTCCACTTGGCTGTAATTTGTATGGGTCAATTGGAGATACTCGCAAGCAGAATAATCTCTATAAATTAATCTAATGAAAGTACAAGACTAAAATTCCAATGGCAAATTGCTCAAGTAGGAATGGATTTTTTCTTAAGCCAATGCAAATTGCAATCTATCAAGAAAAACCCCATAACTGGCATCCCTCTTCCTAGCAGCGTACTTTTATGCATATCTGGTTCATTTGCTATCATTCTGCCTTGTCTTGATTTTTGCGCATTTAGAGTTGGTAATTAGCCATTTCGATTAAGATTATTTTAATATCGTGTTTTGTCACTCAAAATACTAAACAGTGAACTCTATTTTTTTTACTTTTAGTGCAAAAAGTTGGGATTACGGAGTAGAATTATCTTCATGTTAATAAGAAACTGATATCTGCCTTAAATCTGCAGTGCTTTCTTACTGGTGTGAAGGGCTTTCAGTATAAACAGAGTAGTAAATACGAGCTTCGGGTTTATGTTGATGATGGCAGCCTAATCTCTGAGATCCTTATAGATCATGCT</genome_strand>
        <mrna_strand>ATTTTCAGGTTCATGAACGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACATCTGGCAGTGCTACTACTGCAACTGAAGAAATTCATCCCGTTACATCTGGGCTACCATATTCTACGTCATTCACCACTCCTGTTTATAGAAGAGAGGCTCAATCTAATTTCCCATCTACTCCAGCTGTTTCTGTCCCATTCAATAGGAACACTGGACCTACCTTTTCATCTGATGCAGCTAGTCATGCAGAGGATATCCATATGGCTGACATGACCACCGAAGGCATTGATGTTCCAATTAGAAGGGAACATAATGACCCTGTCCTTTCATCTTCTTCTTCCATGGAAGTGGAGGAACTTTTGTCAGATATTAGAAGTGACCCTGCCACACCTGCCAGTAGCAGGAGCAGAGGAAGCATTCGTGTCTCTAGTGATAGTTTCCATTATGAAGATGTAACACCAGATACATTGTCTACTGCAGCAATTGACGTTGATGAAATTGATTTGGTTGATGAATTGGACCATCCATATATACTTTCTGGAGCAAAGGAAAACCCTTTCACTTACTTAGCTAGTCTGTCAGCTAAGCAGGCTGGTATGCATGGCAGTGCTTCCACTGTTACAGGAAAAATTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTTCTTACTGGTGTGAAGGGATTTCAGTATAAACAGAGTAGTAAATACGAGCTTCGGGTTTATGTTGATGATGGCAGCCTAATCTCTGAGATCCTTATAGATCATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735902" ref_strand="-" ref_description="SGN-E735902 [LC03CD10]">
      <seq>agcaattgacgttgatgaaattgatttggttgatgaattggaccatccatatatactttctggagcaaaggaaaaccctttcacttacttagctagtctgtcagctaagcaggctggtatgcatggcagtgcttccactgttacaggaaaaattaagtgctttcttactggtgtgaagggatttcagtataaacagagtagtaaatacgagcttcgggtttatgttgatgatggcagcctaatctctgagatccttatagatcatgctcttgtgcaggaaaaaataggcttttctcctgcagaggtaaatgctgctcttagttcttcagatagaaaacgagtcagtgacacgaaggagacactgaaatgtttccagaaattcttgattaattttgagggaacaatgcttgttcatttgaatgaagaatctccaattccagttgctactgaaatgaaccaggggtgctctgcctctgatgcatggttgcttctcaaaagactaaagccttctacttctccgcgacaacatcatcttcatcactcagaaaccataaatttatccccttgatgtgtcgttggttcatggggaatttgataaccacgagagcaaggtgaattagagtgacattgctcaatttaggaagttgttgcatgagatgacgcccagaagcaatggcgtaaatgcagaaatagttcacctgtgattcaaacaatgaaaggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0090D09.1" temp_strand="+" temp_description="C12HBa0090D09.1  AC212766.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0090D09 upload_account_name:italy">
        <position start="19421" stop="21695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19721" g_stop="19877" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19878" i_stop="20406" i_length="529">
            <donor d_prob="0.969" d_score="0.96"/>
            <acceptor a_prob="0.926" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20407" g_stop="20517" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="268" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20518" i_stop="20588" i_length="71">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20589" g_stop="20717" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="397" r_length="129" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20718" i_stop="21070" i_length="353">
            <donor d_prob="0.926" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21071" g_stop="21395" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="723" r_length="326" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0090D09.1" gen_strand="+" ref_id="SGN-E735902" ref_strand="-">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0090D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735902" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="19721" e_stop="19877"/>
          <exon e_start="20407" e_stop="20517"/>
          <exon e_start="20589" e_stop="20717"/>
          <exon e_start="21071" e_stop="21395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATTGACGTTGATCAAATTGATTTGGTTGATGAATTGGACCATCCATATATACTTTCTGGAGCGAAGGAAAACCCTTTCACTTACTTAGCTAGTCTGTCAGCTAAGCAGGCTGGTGTGAATGGCAGTGCTTCCACTGTTACAGGAAAAATTAAGGTAACTTTTGCTCTCCCTCGTGATATCAACTTCTCTGATGCTTCCATGTAGAAAATTCACTGCGTCCTTTCTATCTTACCCTTGTTAATTGGGTCTTTTTCCACTTGGCTGTAATTTGTATGGGTCAATTGGAGATACTCGCAAGCAGAATAATCTCTATAAATTAATCTAATGAAAGTACAAGACTAAAATTCCAATGGCAAATTGCTCAAGTAGGAATGGATTTTTTCTTAAGCCAATGCAAATTGCAATCTATCAAGAAAAACCCCATAACTGGCATCCCTCTTCCTAGCAGCGTACTTTTATGCATATCTGGTTCATTTGCTATCATTCTGCCTTGTCTTGATTTTTGCGCATTTAGAGTTGGTAATTAGCCATTTCGATTAAGATTATTTTAATATCGTGTTTTGTCACTCAAAATACTAAACAGTGAACTCTATTTTTTTTACTTTTAGTGCAAAAAGTTGGGATTACGGAGTAGAATTATCTTCATGTTAATAAGAAACTGATATCTGCCTTAAATCTGCAGTGCTTTCTTACTGGTGTGAAGGGCTTTCAGTATAAACAGAGTAGTAAATACGAGCTTCGGGTTTATGTTGATGATGGCAGCCTAATCTCTGAGATCCTTATAGATCATGCTGTAAGTTATTGAAGACTGGACACCCCCTGACTGTCAGAATCTGATTATTGTTCAACTTTTGTCTGCTTCAGCTTGTGCAGGAAAAAATAGGCTTTTCTCCTGCAGAGGTAAATGCTGCTCTTAGTTCTTCAGATGGCAAACGAGTCAGTGACACGAAGGAGACTCTGAAATGTTTCCAGAAATTCTTGATTAATTTTGAGGTATATCACTGCTATCCATGAAGGGAATTTTGTTTATAGATAACTCCACATGAATCTTCTAAGTTCATATCTGTTTGTTGGATCAAGAAGTACAGGGCAACCACATCTCTCCAAGTGAAAAATATGCGTCCAGGGATAGGTCTTAATGGCATGACTCTGCATTTATAAATCATAAGTACATGAAACATGAAAAAATAATAGAATACAAATGATAATTTCTATGATTATTAACTCGATTATTATTGACGTTAAAGCTGTTACCTGCTGAAGGATTTTGATCTCGTAAAATTAGTACTTCAAAGATATGCTCTGGCCTCTGTGCATGAAAATGTCTTGGACAATGTGTCTTGCAGGGAACAATGCTTGTTCATTTGAATGAAGAATCTCCAATTCCAGTTGCTACTGAAATGAACCAGGGGTGCTCTGCCTCTGATGCATGGTTGCTTCTCAAAAGACTAAAGCCTTCTACTTCTCCGCGACAACATCATCTTCATCACTCAGAAACCATCAATTTATCCCCTTGATGTCTCGTTCATTCTATGGAGAATTTCAAAACCACGAGAGCAAGGTGAGTTACAGAGTGACATTGCTCAATTCAGAAAGTTGTTGC-T--GACG-CCCTCAGAAGCAATGGCGTAAATGCAGAAATAGTTCACCTGTGATTCAAACAATGAAATGACT</genome_strand>
        <mrna_strand>AGCAATTGACGTTGATGAAATTGATTTGGTTGATGAATTGGACCATCCATATATACTTTCTGGAGCAAAGGAAAACCCTTTCACTTACTTAGCTAGTCTGTCAGCTAAGCAGGCTGGTATGCATGGCAGTGCTTCCACTGTTACAGGAAAAATTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTTCTTACTGGTGTGAAGGGATTTCAGTATAAACAGAGTAGTAAATACGAGCTTCGGGTTTATGTTGATGATGGCAGCCTAATCTCTGAGATCCTTATAGATCATGCT.......................................................................CTTGTGCAGGAAAAAATAGGCTTTTCTCCTGCAGAGGTAAATGCTGCTCTTAGTTCTTCAGATAGAAAACGAGTCAGTGACACGAAGGAGACACTGAAATGTTTCCAGAAATTCTTGATTAATTTTGAG.................................................................................................................................................................................................................................................................................................................................................................GGAACAATGCTTGTTCATTTGAATGAAGAATCTCCAATTCCAGTTGCTACTGAAATGAACCAGGGGTGCTCTGCCTCTGATGCATGGTTGCTTCTCAAAAGACTAAAGCCTTCTACTTCTCCGCGACAACATCATCTTCATCACTCAGAAACCATAAATTTATCCCCTTGATGTGTCGTTGGTTC-ATGGGGAATTTGATAACCACGAGAGCAAGGTGAATT--AGAGTGACATTGCTCAATTTAGGAAGTTGTTGCATGAGATGACGCCCAGAAGCAATGGCGTAAATGCAGAAATAGTTCACCTGTGATTCAAACAATGAAAGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E610734" ref_strand="+" ref_description="SGN-E610734 [57902]">
      <seq>gggctttcagtataaacagagtagtaaactacgagcttcgagtttatgttgatgatggcagcctaatctctgagatccttatagatcatgctcttgtgcagaaaaaaataggcttttctcctgcagaggtaaatgctgctcttagttcttcagatagcaaacgagtcagtgacacgaaggagacactgaaatgtttccagaaattcttgattaattttgagggaacaatgcttgttcatttgaatgaagaatctccaattccagttgctactgaaatgaaccaggggtgttctgcctctgatgcatggttgcttctcaaaagactaaagccttctacttctccgcgacaacatcatcttcatcacccagaaaccatcaatttatccccttgatgtctcgttcgttctctggagagattcaaaactacgagagcaaggtgagttacacatgacattgctatggcgtaaatgcagaaatagttcacctttgattcaaacaatgaaatgacttctcaaattgcatagccagggtgtatgaggggggtccatcctaaccttcttcctcggaaaattacaatgtacatataaggtcaattagctagaattcatttggtttcctgttattcctcttttatctctagaagatttaagaactttgaattactatatattaacctagaaaattcttttcgaacatagattttgaaatctaattgatatattttagttccttttttccccttccttttttgataattactttgaaattgatcgtgtaactatcgttctttatcttaaaccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0090D09.1" temp_strand="+" temp_description="C12HBa0090D09.1  AC212766.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0090D09 upload_account_name:italy">
        <position start="20127" stop="21904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20427" g_stop="20517" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20518" i_stop="20588" i_length="71">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20589" g_stop="20717" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="221" r_length="129" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20718" i_stop="21070" i_length="353">
            <donor d_prob="0.926" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21071" g_stop="21308" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="458" r_length="237" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21309" i_stop="21344" i_length="36">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21345" g_stop="21685" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="803" r_length="345" r_score="0.830"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0090D09.1" gen_strand="+" ref_id="SGN-E610734" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0090D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E610734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20427" e_stop="20517"/>
          <exon e_start="20589" e_stop="20717"/>
          <exon e_start="21071" e_stop="21308"/>
          <exon e_start="21345" e_stop="21685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGCTTTCAGTATAAACAGAGTAGTAAA-TACGAGCTTCGGGTTTATGTTGATGATGGCAGCCTAATCTCTGAGATCCTTATAGATCATGCTGTAAGTTATTGAAGACTGGACACCCCCTGACTGTCAGAATCTGATTATTGTTCAACTTTTGTCTGCTTCAGCTTGTGCAGGAAAAAATAGGCTTTTCTCCTGCAGAGGTAAATGCTGCTCTTAGTTCTTCAGATGGCAAACGAGTCAGTGACACGAAGGAGACTCTGAAATGTTTCCAGAAATTCTTGATTAATTTTGAGGTATATCACTGCTATCCATGAAGGGAATTTTGTTTATAGATAACTCCACATGAATCTTCTAAGTTCATATCTGTTTGTTGGATCAAGAAGTACAGGGCAACCACATCTCTCCAAGTGAAAAATATGCGTCCAGGGATAGGTCTTAATGGCATGACTCTGCATTTATAAATCATAAGTACATGAAACATGAAAAAATAATAGAATACAAATGATAATTTCTATGATTATTAACTCGATTATTATTGACGTTAAAGCTGTTACCTGCTGAAGGATTTTGATCTCGTAAAATTAGTACTTCAAAGATATGCTCTGGCCTCTGTGCATGAAAATGTCTTGGACAATGTGTCTTGCAGGGAACAATGCTTGTTCATTTGAATGAAGAATCTCCAATTCCAGTTGCTACTGAAATGAACCAGGGGTGCTCTGCCTCTGATGCATGGTTGCTTCTCAAAAGACTAAAGCCTTCTACTTCTCCGCGACAACATCATCTTCATCACTCAGAAACCATCAATTTATCCCCTTGATGTCTCGTTCATTCTATGGAGAATTTCAAAACCACGAGAGCAAGGTGAGTTACAGAGTGACATTGCTCAATTCAGAAAGTTGTTGCTGACGCCCTCAGAAGCAATGGCGTAAATGCAGAAATAGTTCACCTGTGATTCAAACAATGAAATGACTTCTCAAATTGCGGAGCCCAGGGTGTTTGATTGGGGTTCATCCTAACCTTCTTCCTCGGAAAATTACAATGTATATGTGAGGACATATAAGGT-CAATT-AGCTTGATTCATTTTATT-ATCTTCTATTTCTAGATTATTTAAGAA-TTTGAATTACTATATATGAA-CTAG-AAATTCTGTTCGAACATAGATTTTGAAGTTTAATTGATATA-TT-AGTTCTTTTTTCCCCTTTCCTTTTCTTGATAATTACTTTCAATTTGATCGTGTAGCTATTCTTCTTTTATCTTAAACAATG</genome_strand>
        <mrna_strand>GGGCTTTCAGTATAAACAGAGTAGTAAACTACGAGCTTCGAGTTTATGTTGATGATGGCAGCCTAATCTCTGAGATCCTTATAGATCATGCT.......................................................................CTTGTGCAGAAAAAAATAGGCTTTTCTCCTGCAGAGGTAAATGCTGCTCTTAGTTCTTCAGATAGCAAACGAGTCAGTGACACGAAGGAGACACTGAAATGTTTCCAGAAATTCTTGATTAATTTTGAG.................................................................................................................................................................................................................................................................................................................................................................GGAACAATGCTTGTTCATTTGAATGAAGAATCTCCAATTCCAGTTGCTACTGAAATGAACCAGGGGTGTTCTGCCTCTGATGCATGGTTGCTTCTCAAAAGACTAAAGCCTTCTACTTCTCCGCGACAACATCATCTTCATCACCCAGAAACCATCAATTTATCCCCTTGATGTCTCGTTCGTTCTCTGGAGAGATTCAAAACTACGAGAGCAAGGTGAGTTACACA-TGACATTGCT....................................ATGGCGTAAATGCAGAAATAGTTCACCTTTGATTCAAACAATGAAATGACTTCTCAAATTGCATAG-CCAGGGTGTATGAGGGGGGTCCATCCTAACCTTCTTCCTCGGAAAATTACAATGTACATATAAGGTCA-ATTAGCTAGAATTCATTTGGTTTCCTGTTATTCCTCTTTTATCTCTAGAAGATTTAAGAACTTTGAATTACTATATATTAACCTAGAAAATTCTTTTCGAACATAGATTTTGAAATCTAATTGATATATTTTAGTTCCTTTTTTCCCCTTCCTTTT-TTGATAATTACTTTGAAATTGATCGTGTAACTATCGTTC-TTTATCTTAAACCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220013" ref_strand="+" ref_description="SGN-E220013 [cLEL-24-A13](-)">
      <seq>gcttcattggagaatataggtaatcaagtagatgatgatattatgagatttcttgataattttccacttggtgtacctgttcctgactggtgtgatgatcaacaaaatacatcaaatggtcaatcttttgaatgtgaccaaattcaattgtcctcaaaatcaagttcatgaagattcggaattgcagattcagaatttgaagtttatcgatttctcatacaacaattttaagttgaaatataataatcagtcaaatagttatagatgtttagaaaaaatttcttaatatatagacgagatctctgtacagggtacacgtgaacccgttagttacaagctagatctgtctcttttaaggatgatcaagaataggaaatcatgcccttgttttagttaattaaaagtagtcaagacatttatttatattcttattcataaatttaccattaagtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0090D09.1" temp_strand="+" temp_description="C12HBa0090D09.1  AC212766.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0090D09 upload_account_name:italy">
        <position start="24928" stop="25991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25228" g_stop="25696" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0090D09.1" gen_strand="+" ref_id="SGN-E220013" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0090D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25228" e_stop="25696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCATTGGAGAATATAGGTAATCAAGTAGATGATGATATTATGAGATTTCTTGATAATTTTCCACTTGGTGTACCTGTTCCTGACTGGTGTGATGATCAACAAAATACATCAAATGGTCAATCTTTTGAATGTGACCAAATTCAATTGTCCTCAAAATCAAGTTCATGAAGATTCGGAATTGCAGATTCAGAATTTGAAGTTTATCGATTTCTCATACAACAATTTTAAGTTGAAATATAATAATCAGTCAAATAGTTATAGATGTTTAGAAAAAATTTCTTAATATATAGACGAGATCTCTGTACAGGGTACACGTGAACCCGTTAGTTACAAGCTAGATCTGTCTCTTTTAAGGATGATCAAGAATAGGAAATCATGCCCTTGTTTTAGTTAATTAAAAGTAGTCAAGACATTTATTTATATTCTTATTCATAAATTTACCATTAAGTAAATAGCAAAGATTGCA</genome_strand>
        <mrna_strand>GCTTCATTGGAGAATATAGGTAATCAAGTAGATGATGATATTATGAGATTTCTTGATAATTTTCCACTTGGTGTACCTGTTCCTGACTGGTGTGATGATCAACAAAATACATCAAATGGTCAATCTTTTGAATGTGACCAAATTCAATTGTCCTCAAAATCAAGTTCATGAAGATTCGGAATTGCAGATTCAGAATTTGAAGTTTATCGATTTCTCATACAACAATTTTAAGTTGAAATATAATAATCAGTCAAATAGTTATAGATGTTTAGAAAAAATTTCTTAATATATAGACGAGATCTCTGTACAGGGTACACGTGAACCCGTTAGTTACAAGCTAGATCTGTCTCTTTTAAGGATGATCAAGAATAGGAAATCATGCCCTTGTTTTAGTTAATTAAAAGTAGTCAAGACATTTATTTATATTCTTATTCATAAATTTACCATTAAGTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E219677" ref_strand="+" ref_description="SGN-E219677 [cLEL-24-A13](-)">
      <seq>aaaatacatcaaatggtcaatcttttgaatgtgaccaaattcaattgtcctcaaaatcaagttcatgaagattcggaattgcagattcagaatttgaagtttatcgatttctcatacaacaattttaagttgaaatataataatcagtcaaatagttatagatgtttagaaaaaatttcttaatatatagacgagatctctgtacagggtacacgtgaacccgttagttacaagctagatctgtctcttttaaggatgatcaagaataggaaatcatgcccttgttttagttaattaaaagtagtcaagacatttatttatattcttattcataaatttaccattaagtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0090D09.1" temp_strand="+" temp_description="C12HBa0090D09.1  AC212766.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0090D09 upload_account_name:italy">
        <position start="25031" stop="25991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25331" g_stop="25696" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0090D09.1" gen_strand="+" ref_id="SGN-E219677" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0090D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25331" e_stop="25696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATACATCAAATGGTCAATCTTTTGAATGTGACCAAATTCAATTGTCCTCAAAATCAAGTTCATGAAGATTCGGAATTGCAGATTCAGAATTTGAAGTTTATCGATTTCTCATACAACAATTTTAAGTTGAAATATAATAATCAGTCAAATAGTTATAGATGTTTAGAAAAAATTTCTTAATATATAGACGAGATCTCTGTACAGGGTACACGTGAACCCGTTAGTTACAAGCTAGATCTGTCTCTTTTAAGGATGATCAAGAATAGGAAATCATGCCCTTGTTTTAGTTAATTAAAAGTAGTCAAGACATTTATTTATATTCTTATTCATAAATTTACCATTAAGTAAATAGCAAAGATTGCA</genome_strand>
        <mrna_strand>AAAATACATCAAATGGTCAATCTTTTGAATGTGACCAAATTCAATTGTCCTCAAAATCAAGTTCATGAAGATTCGGAATTGCAGATTCAGAATTTGAAGTTTATCGATTTCTCATACAACAATTTTAAGTTGAAATATAATAATCAGTCAAATAGTTATAGATGTTTAGAAAAAATTTCTTAATATATAGACGAGATCTCTGTACAGGGTACACGTGAACCCGTTAGTTACAAGCTAGATCTGTCTCTTTTAAGGATGATCAAGAATAGGAAATCATGCCCTTGTTTTAGTTAATTAAAAGTAGTCAAGACATTTATTTATATTCTTATTCATAAATTTACCATTAAGTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391450" ref_strand="+" ref_description="SGN-E391450 [TUS-16-A3](-)">
      <seq>atggaaggcacaggcaggcaacgttgctattgcctctttcgactggacctgcagtggaatatgcaggtctgtcgttaggatgaaggaggtccatcccccctccggcgagggagagaatgcattatggaaagctgcattctgatgacattcagtatgtcaaaatctcacattcttttggttggaagtacatattatacgtctgatcaaaggcgaattcagaatcccgaatgttgcgtaagtggtttgaaaataagtgtaattgtattatatgtatacattttgtctttttttttcttcatatgtatacatagttcgagcggaaaagcagtcgattcagttgaacctgtagaggtttagctgtggggaaacgtattacatttttgtaacaattaaactcatatcattgtacatatctttaataatgcaagtggaatgaggagttcgaggatttatcttatggacaccgacatttgtaaaaaaaaaactgtaaaatttattcgactacaaaaaagggtcagacataaattcactaaatatgaaatcctcaataagggggaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0090D09.1" temp_strand="-" temp_description="C12HBa0090D09.1  AC212766.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0090D09 upload_account_name:italy">
        <position start="34747" stop="33638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34447" g_stop="33879" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="569" r_length="569" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0090D09.1" gen_strand="-" ref_id="SGN-E391450" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0090D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34447" e_stop="33879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAAGGCACAGGCAGGCAACGTTTGTGTTGCCTCTTTCGACTGGACCTGCAGTGGAATATGCAGGTCTGTCGATAGGATGAAGGAGGTCCATCGCCATTGTGGCGAGGGAGAGAATGCACTATGGAAAGCTGCATTCTGAGGACATTCACTATGTCAAAATGTCACATTCTTTTGGTTGGAAGTACATATTATACGTATGATCAAAGGCGAATTCAGAATCCAGAATGTTGAGTAAGTGGTTTGAAAATAAGTGTAATTGTATTATATGTATACATTTTGTCTTTTTTTTTCTTCATATGTATACATAGTTCGAGCGGAAAAGCAGTCGATTCAGTTGAACCTGTAGAGGTTTAGCTGTGGGGAAACCTACTACATTTTTGTAACAAATAAACTCATATCATTGTACATATCTCTAATAATGCAAGTGGAATGAATTGTTCGAGGATTTAACTTATAGACACCGACA-TTGTAAAAAAAAAACTGTAAAATTTATTCGACTACAAAATATATTCAGACATAAATTAAATAAATATGAAATCCTAAATTTCTTTGGAATTATTGCTCAA</genome_strand>
        <mrna_strand>ATGGAAGGCACAGGCAGGCAACGTTGCTATTGCCTCTTTCGACTGGACCTGCAGTGGAATATGCAGGTCTGTCGTTAGGATGAAGGAGGTCCATCCCCCCTCCGGCGAGGGAGAGAATGCATTATGGAAAGCTGCATTCTGATGACATTCAGTATGTCAAAATCTCACATTCTTTTGGTTGGAAGTACATATTATACGTCTGATCAAAGGCGAATTCAGAATCCCGAATGTTGCGTAAGTGGTTTGAAAATAAGTGTAATTGTATTATATGTATACATTTTGTCTTTTTTTTTCTTCATATGTATACATAGTTCGAGCGGAAAAGCAGTCGATTCAGTTGAACCTGTAGAGGTTTAGCTGTGGGGAAACGTATTACATTTTTGTAACAATTAAACTCATATCATTGTACATATCTTTAATAATGCAAGTGGAATGAGGAGTTCGAGGATTTATCTTATGGACACCGACATTTGTAAAAAAAAAACTGTAAAATTTATTCGACTACAAAAAAGGGTCAGACATAAATTCACTAAATATGAAATCCTCAA-TAAGGGGGAACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395724" ref_strand="+" ref_description="SGN-E395724 [TUS-17-B4](-)">
      <seq>gaaggcacaggcaggcaacgtttgtgttgcctctttcgactggacctgcagtggaatatgcaggtctgtcgataggatgaaggaggtccatcgccattgtggcgagggagagaatgcactatggaaagctgcattctgaggacattcactatgtcaaaatgtcacattcttttggttggaagtacatattatacgtatgatcaaaggcgaattcagaatccagaatgttgagtaagtggtttgaaaataagtgtaattgtattatatgtatacattttgtctttttttttcttcatatgtatacatagttcgagcggaaaagcagtcgattcagttgaacctgtagaggtttagctgtggggaaacctactacatttttgtaacaaataaactcatatcattgtacatatctctaataatgcaagtggaatgaattgttcgaggatttaacttatagacaccgacattgtaaaaaaaaaactgtaaaatttattcgactacaaaatatattcagacataaattaaataaatatgaaatcctaaatttcttggaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0090D09.1" temp_strand="-" temp_description="C12HBa0090D09.1  AC212766.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0090D09 upload_account_name:italy">
        <position start="34744" stop="33590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34444" g_stop="33879" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="565" r_length="565" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0090D09.1" gen_strand="-" ref_id="SGN-E395724" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0090D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34444" e_stop="33879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGCACAGGCAGGCAACGTTTGTGTTGCCTCTTTCGACTGGACCTGCAGTGGAATATGCAGGTCTGTCGATAGGATGAAGGAGGTCCATCGCCATTGTGGCGAGGGAGAGAATGCACTATGGAAAGCTGCATTCTGAGGACATTCACTATGTCAAAATGTCACATTCTTTTGGTTGGAAGTACATATTATACGTATGATCAAAGGCGAATTCAGAATCCAGAATGTTGAGTAAGTGGTTTGAAAATAAGTGTAATTGTATTATATGTATACATTTTGTCTTTTTTTTTCTTCATATGTATACATAGTTCGAGCGGAAAAGCAGTCGATTCAGTTGAACCTGTAGAGGTTTAGCTGTGGGGAAACCTACTACATTTTTGTAACAAATAAACTCATATCATTGTACATATCTCTAATAATGCAAGTGGAATGAATTGTTCGAGGATTTAACTTATAGACACCGACATTGTAAAAAAAAAACTGTAAAATTTATTCGACTACAAAATATATTCAGACATAAATTAAATAAATATGAAATCCTAAATTTCTTTGGAATTATTGCTCAA</genome_strand>
        <mrna_strand>GAAGGCACAGGCAGGCAACGTTTGTGTTGCCTCTTTCGACTGGACCTGCAGTGGAATATGCAGGTCTGTCGATAGGATGAAGGAGGTCCATCGCCATTGTGGCGAGGGAGAGAATGCACTATGGAAAGCTGCATTCTGAGGACATTCACTATGTCAAAATGTCACATTCTTTTGGTTGGAAGTACATATTATACGTATGATCAAAGGCGAATTCAGAATCCAGAATGTTGAGTAAGTGGTTTGAAAATAAGTGTAATTGTATTATATGTATACATTTTGTCTTTTTTTTTCTTCATATGTATACATAGTTCGAGCGGAAAAGCAGTCGATTCAGTTGAACCTGTAGAGGTTTAGCTGTGGGGAAACCTACTACATTTTTGTAACAAATAAACTCATATCATTGTACATATCTCTAATAATGCAAGTGGAATGAATTGTTCGAGGATTTAACTTATAGACACCGACATTGTAAAAAAAAAACTGTAAAATTTATTCGACTACAAAATATATTCAGACATAAATTAAATAAATATGAAATCCTAAATTTC-TTGGAACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395725" ref_strand="+" ref_description="SGN-E395725 [TUS-17-B4]">
      <seq>ccacattagggggcatattagacaaagctattgaagctgaggacaaaaagcacggtgatttcttgcgtctggatcatattgagggttatcttgaattgtccgccaagacgaagacttactttgccacagctgttaacttatgggatgctgagtattacatcaaggttgatgatgatgttcatgtcaatatagctacactggcggaaacattagtaaggcatagtaaaaaaccacgtatatatatcgggtgcatgaaatctggtcctgtcctttccaggaagggtgtaaggtatcatgaaccggaatattggaaattcggagacaagtattttcgtcatgctactggacaaatatatgccatttctaaagacttagctacttacatatcagcaaaccacttttggaagatctgacatacacccttcagtatttttgatgagtccgagcagcctcttacatatgtatactcttcttgatatgttaaggcatgtacttcataaatatacaaacgaagatgtgtcactgggagcttggtttattggactcgatgtgcagcatatcgatgatcgtagactgtgttgtggaaccccacctgattgtgaatggaaggcacaggcaggcaacgtttgtgttgcctctttcgactggacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0090D09.1" temp_strand="-" temp_description="C12HBa0090D09.1  AC212766.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0090D09 upload_account_name:italy">
        <position start="36052" stop="34097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35752" g_stop="35682" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35681" i_stop="35564" i_length="118">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.154" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35563" g_stop="35443" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="192" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35442" i_stop="35308" i_length="135">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35307" g_stop="35220" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="280" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35219" i_stop="35144" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35143" g_stop="35027" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="397" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35026" i_stop="34909" i_length="118">
            <donor d_prob="0.335" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34908" g_stop="34711" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="595" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34710" i_stop="34455" i_length="256">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34454" g_stop="34397" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="653" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0090D09.1" gen_strand="-" ref_id="SGN-E395725" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0090D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35752" e_stop="35682"/>
          <exon e_start="35563" e_stop="35443"/>
          <exon e_start="35307" e_stop="35220"/>
          <exon e_start="35143" e_stop="35027"/>
          <exon e_start="34908" e_stop="34711"/>
          <exon e_start="34454" e_stop="34397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACATTAGGGGGCATATTAGACAAAGCTATTGAAGCTGAGGACAAAAAGCACGGTGATTTCTTGCGTCTGGTAATATTTTTCTCTCACATTTCCTTTGATCATTCACTTTACTCTTGTGAACCACATGTTATAATTGATGTATTCACACGTAAAAAAGACGATACATCACTCTGCTGCCTTTTAACAGGATCATATTGAGGGTTATCTTGAATTGTCCGCCAAGACGAAGACTTACTTTGCCACAGCTGTTAACTTATGGGATGCTGAGTATTACATCAAGGTTGATGATGATGTTCATGTCAATATAGGTAACCAAAATATTTCGTAATTTTTCTGCCTTGACATACTTAACACTTAACCAAAACCATCACTTTTCAATGTTATATAGAGATTGTAAGACTTGTTACAGCAAATTCAAGCTTGATTTTTCACTTCTGTTGCAGCTACACTGGCGGAAACATTAGTAAGGCATAGTAAAAAACCACGTATATATATCGGGTGCATGAAATCTGGTCCTGTCCTTTCCAGGAAGTAAGGACATCCATTTTTTCTGCAAAATTGAAACTTGAAGTTTCATTTTTGATCATTTTGTTGTTTTCAATGGCAGGGGTGTAAGGTATCATGAACCGGAATATTGGAAATTCGGAGACAAGTATTTTCGTCATGCTACTGGACAAATATATGCCATTTCTAAAGACTTAGCTACTTACATATCAGCAAACCAGTTAAGTATCTTTTTCTTAATATATTTCGAATAAAAGCATAGTTTTTCTTCTTTCCTATGTTGCTCACACTCTCTAATAATATTTCCACTCCCGCGTTGAATCCCCCAAAATGCATAGCTTTTGGAAGATCTGACATACACCCTTCAGTATTTTTGATGAGTCCGAGCAGCCTCTTACATATGTATACTCTTCTTGATATGTTAAGGCATGTACTTCATAAATATACAAACGAAGATGTGTCACTGGGAGCTTGGTTTATTGGACTCGATGTGCAGCATATCGATGATCGTAGACTGTGTTGTGGAACCCCACCTGGTAAAGCACACCTCTTCTTTTCTTCTGTATAACAGTATTATTAGTTACTCGTTGGATTTCTTTGGGACAATTCTCACTAAATGATTATATGAATTACAATCTTTTGTCTTCATTGAAAATAGTTTCATGACTTTACTGCTATAGTAGGTAAAGTTCAGTGAGCGTAATACACGTGTGTGAGTTGATGTCTAACGAGACGTTGTTAGTTTCATCTTTGTGTTATCAAATTTGATACGAAAAGTACTTGTCGATGCAGATTGTGAATGGAAGGCACAGGCAGGCAACGTTTGTGTTGCCTCTTTCGACTGGACCTG</genome_strand>
        <mrna_strand>CCACATTAGGGGGCATATTAGACAAAGCTATTGAAGCTGAGGACAAAAAGCACGGTGATTTCTTGCGTCTG......................................................................................................................GATCATATTGAGGGTTATCTTGAATTGTCCGCCAAGACGAAGACTTACTTTGCCACAGCTGTTAACTTATGGGATGCTGAGTATTACATCAAGGTTGATGATGATGTTCATGTCAATATAG.......................................................................................................................................CTACACTGGCGGAAACATTAGTAAGGCATAGTAAAAAACCACGTATATATATCGGGTGCATGAAATCTGGTCCTGTCCTTTCCAGGAA............................................................................GGGTGTAAGGTATCATGAACCGGAATATTGGAAATTCGGAGACAAGTATTTTCGTCATGCTACTGGACAAATATATGCCATTTCTAAAGACTTAGCTACTTACATATCAGCAAACCA......................................................................................................................CTTTTGGAAGATCTGACATACACCCTTCAGTATTTTTGATGAGTCCGAGCAGCCTCTTACATATGTATACTCTTCTTGATATGTTAAGGCATGTACTTCATAAATATACAAACGAAGATGTGTCACTGGGAGCTTGGTTTATTGGACTCGATGTGCAGCATATCGATGATCGTAGACTGTGTTGTGGAACCCCACCTG................................................................................................................................................................................................................................................................ATTGTGAATGGAAGGCACAGGCAGGCAACGTTTGTGTTGCCTCTTTCGACTGGACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207674" ref_strand="+" ref_description="SGN-E207674 [cLEC-32-D16]">
      <seq>cacattagggggcatattagacaaagctattgaagctgaggacaaaaagcacggtgatttcttgcgtctggatcatattgagggttatcttgaattgtccgccaagacgaagacttactttgccacagctgttaacttatgggatgctgagtattacatcaaggttgatgatgatgttcatgtcaatatagctacactggcggaaacattagtaaggcatagtaaaaaaccacgtatatatatcgggtgcatgaaatctggtcctgtcctttccaggaagggtgtaaggtatcatgaaccggaatattggaaattcggagacaagtattttcgtcatgctactggacaaatatatgccatttctaaagacttagctacttacatatcagcaaaccacttttggaagatctgacatacacccttcagtatttttgatgagtccgagcagcctcttacatatgtatactcttcttgatatgttaaggcatgtacttcataaatatacaaacgaagatgtgtcactgggagcttggtttattggactcgatgtgcagcatatcgatgatcgtagactgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0090D09.1" temp_strand="-" temp_description="C12HBa0090D09.1  AC212766.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0090D09 upload_account_name:italy">
        <position start="36051" stop="34427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35751" g_stop="35682" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35681" i_stop="35564" i_length="118">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.154" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35563" g_stop="35443" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="191" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35442" i_stop="35308" i_length="135">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35307" g_stop="35220" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="279" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35219" i_stop="35144" i_length="76">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35143" g_stop="35027" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="396" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35026" i_stop="34909" i_length="118">
            <donor d_prob="0.335" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34908" g_stop="34727" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="578" r_length="182" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0090D09.1" gen_strand="-" ref_id="SGN-E207674" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0090D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35751" e_stop="35682"/>
          <exon e_start="35563" e_stop="35443"/>
          <exon e_start="35307" e_stop="35220"/>
          <exon e_start="35143" e_stop="35027"/>
          <exon e_start="34908" e_stop="34727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATTAGGGGGCATATTAGACAAAGCTATTGAAGCTGAGGACAAAAAGCACGGTGATTTCTTGCGTCTGGTAATATTTTTCTCTCACATTTCCTTTGATCATTCACTTTACTCTTGTGAACCACATGTTATAATTGATGTATTCACACGTAAAAAAGACGATACATCACTCTGCTGCCTTTTAACAGGATCATATTGAGGGTTATCTTGAATTGTCCGCCAAGACGAAGACTTACTTTGCCACAGCTGTTAACTTATGGGATGCTGAGTATTACATCAAGGTTGATGATGATGTTCATGTCAATATAGGTAACCAAAATATTTCGTAATTTTTCTGCCTTGACATACTTAACACTTAACCAAAACCATCACTTTTCAATGTTATATAGAGATTGTAAGACTTGTTACAGCAAATTCAAGCTTGATTTTTCACTTCTGTTGCAGCTACACTGGCGGAAACATTAGTAAGGCATAGTAAAAAACCACGTATATATATCGGGTGCATGAAATCTGGTCCTGTCCTTTCCAGGAAGTAAGGACATCCATTTTTTCTGCAAAATTGAAACTTGAAGTTTCATTTTTGATCATTTTGTTGTTTTCAATGGCAGGGGTGTAAGGTATCATGAACCGGAATATTGGAAATTCGGAGACAAGTATTTTCGTCATGCTACTGGACAAATATATGCCATTTCTAAAGACTTAGCTACTTACATATCAGCAAACCAGTTAAGTATCTTTTTCTTAATATATTTCGAATAAAAGCATAGTTTTTCTTCTTTCCTATGTTGCTCACACTCTCTAATAATATTTCCACTCCCGCGTTGAATCCCCCAAAATGCATAGCTTTTGGAAGATCTGACATACACCCTTCAGTATTTTTGATGAGTCCGAGCAGCCTCTTACATATGTATACTCTTCTTGATATGTTAAGGCATGTACTTCATAAATATACAAACGAAGATGTGTCACTGGGAGCTTGGTTTATTGGACTCGATGTGCAGCATATCGATGATCGTAGACTGTGT</genome_strand>
        <mrna_strand>CACATTAGGGGGCATATTAGACAAAGCTATTGAAGCTGAGGACAAAAAGCACGGTGATTTCTTGCGTCTG......................................................................................................................GATCATATTGAGGGTTATCTTGAATTGTCCGCCAAGACGAAGACTTACTTTGCCACAGCTGTTAACTTATGGGATGCTGAGTATTACATCAAGGTTGATGATGATGTTCATGTCAATATAG.......................................................................................................................................CTACACTGGCGGAAACATTAGTAAGGCATAGTAAAAAACCACGTATATATATCGGGTGCATGAAATCTGGTCCTGTCCTTTCCAGGAA............................................................................GGGTGTAAGGTATCATGAACCGGAATATTGGAAATTCGGAGACAAGTATTTTCGTCATGCTACTGGACAAATATATGCCATTTCTAAAGACTTAGCTACTTACATATCAGCAAACCA......................................................................................................................CTTTTGGAAGATCTGACATACACCCTTCAGTATTTTTGATGAGTCCGAGCAGCCTCTTACATATGTATACTCTTCTTGATATGTTAAGGCATGTACTTCATAAATATACAAACGAAGATGTGTCACTGGGAGCTTGGTTTATTGGACTCGATGTGCAGCATATCGATGATCGTAGACTGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254699" ref_strand="+" ref_description="SGN-E254699 [cLEG-29-B2]">
      <seq>cttgtatccaaagataattttgtgatattagataaaaccatttcaaatttggagagagagttggctgaagcaaaggcagctcacgagtcgattctcagtggggttccgatatcagaagagattgaaaagggtgaatcacgaagaagaagaaaatattttatggtggtaggaataaacactgcatttagtagcagaaaaagaagggattcagttcgcgctacatggatgccacaaggtgaaaaaagaaggaagctggaagaagagaaaggaataatcattcgcttcgtcattggtcatagtgccacattagggggcatattagacaaagctattgaagctgaggacaaaaagcacggtgatttcttgcgtctggatcatattgagggttatcttgaattgtccgccaagacgaagacttactttgccacagctgttaacttatgggatgctgagtattacatcaaggttgatgatgatgttcatgtcaatatagctacactggcggaaacattagtaaggcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0090D09.1" temp_strand="-" temp_description="C12HBa0090D09.1  AC212766.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0090D09 upload_account_name:italy">
        <position start="36927" stop="34979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36627" g_stop="36393" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36392" i_stop="36301" i_length="92">
            <donor d_prob="0.790" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36300" g_stop="36237" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="299" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36236" i_stop="35755" i_length="482">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35754" g_stop="35682" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="372" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35681" i_stop="35564" i_length="118">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.154" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35563" g_stop="35443" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="493" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35442" i_stop="35308" i_length="135">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35307" g_stop="35279" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="522" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0090D09.1" gen_strand="-" ref_id="SGN-E254699" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0090D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36627" e_stop="36393"/>
          <exon e_start="36300" e_stop="36237"/>
          <exon e_start="35754" e_stop="35682"/>
          <exon e_start="35563" e_stop="35443"/>
          <exon e_start="35307" e_stop="35279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTATCCAAAGATAATTTTGGGATATTAGATAAAACCATTTCAAATTTGGAGATAGAGTTGGCTGAAGCAAAGGCAGCTCACGAGTCGATTCTCAGTGGGGTTCCGATATCAGAAGAGATTGAAAAGGGTGAATCACGAAGAAGAAGAAAATATTTTATGGTGGTAGGAATAAACACTGCATTTAGTAGCAGAAAAAGAAGGGATTCAGTTCGCGCTACATGGATGCCACAAGGTTTAATGACTCTGCCTATGCCTTAACTCGTCTCATGCTGGCATTTGCTTTGTCTGAGTGTTGACATTGTTGATTTTAACATGGTGAAACAGGTGAAAAAAGAAGGAAGCTGGAAGAAGAGAAAGGAATAATCATTCGCTTCGTCATTGGTCATAGGTGGGGGATTTTGCTTCTTTTCAATTAACTAAACCTTTTCTTCATAGTGGTAATCGTTTTTTGAGTTGATGGTCGAAATATCATCATCGTTAATGATAGTTCAGATAGGGAACTCACAAAAATGTAGTAATTCAGGTGTGCTTTAGACCACTATCTCTTAATTTTCTACTCGGAATTGTTTTTATATAATGTAGTTAGATTATAATAACTTCAGTAAAATTTTGTTGCTTTATGATTGCTTCTGAGTGGGCGTTTTTGGAGTTTCCGACATGAGTATAATGATATTTTTGGAGTATCCGAGCAACATAGATTCTGAGTGAACACCTCTTAATCTCTTTAATTGAAGTTGAGTCTGTCCCTATACCATTACATAAAATCCTATCCTCTTTTGTCTGCATCAACTCTTGTTTGCACTCTTGTATTCGATTAAAAGACAATATAAACGTTTAACATGACTAAAAAGCTACAAATTTGTTCTGCAGTGCCACATTAGGGGGCATATTAGACAAAGCTATTGAAGCTGAGGACAAAAAGCACGGTGATTTCTTGCGTCTGGTAATATTTTTCTCTCACATTTCCTTTGATCATTCACTTTACTCTTGTGAACCACATGTTATAATTGATGTATTCACACGTAAAAAAGACGATACATCACTCTGCTGCCTTTTAACAGGATCATATTGAGGGTTATCTTGAATTGTCCGCCAAGACGAAGACTTACTTTGCCACAGCTGTTAACTTATGGGATGCTGAGTATTACATCAAGGTTGATGATGATGTTCATGTCAATATAGGTAACCAAAATATTTCGTAATTTTTCTGCCTTGACATACTTAACACTTAACCAAAACCATCACTTTTCAATGTTATATAGAGATTGTAAGACTTGTTACAGCAAATTCAAGCTTGATTTTTCACTTCTGTTGCAGCTACACTGGCGGAAACATTAGTAAGGCAT</genome_strand>
        <mrna_strand>CTTGTATCCAAAGATAATTTTGTGATATTAGATAAAACCATTTCAAATTTGGAGAGAGAGTTGGCTGAAGCAAAGGCAGCTCACGAGTCGATTCTCAGTGGGGTTCCGATATCAGAAGAGATTGAAAAGGGTGAATCACGAAGAAGAAGAAAATATTTTATGGTGGTAGGAATAAACACTGCATTTAGTAGCAGAAAAAGAAGGGATTCAGTTCGCGCTACATGGATGCCACAAG............................................................................................GTGAAAAAAGAAGGAAGCTGGAAGAAGAGAAAGGAATAATCATTCGCTTCGTCATTGGTCATAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCACATTAGGGGGCATATTAGACAAAGCTATTGAAGCTGAGGACAAAAAGCACGGTGATTTCTTGCGTCTG......................................................................................................................GATCATATTGAGGGTTATCTTGAATTGTCCGCCAAGACGAAGACTTACTTTGCCACAGCTGTTAACTTATGGGATGCTGAGTATTACATCAAGGTTGATGATGATGTTCATGTCAATATAG.......................................................................................................................................CTACACTGGCGGAAACATTAGTAAGGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254578" ref_strand="+" ref_description="SGN-E254578 [cLEG-29-B14]">
      <seq>cttgtatccaaagataattttgggatattagataaaaccatttcaaatttggagatagagttggctgaagcaaaggcagctcacgagtcgattctcagtggggttccgatatcagaagagattgaaaagggtgaatcacgaagaagaagaaaatattttatggtggtaggaataaacactgcatttagtagcagaaaaagaagggattcagttcgcgctacatggatgccacaaggtgaaaaaagaaggaagctggaagaagagaaaggaataatcattcgcttcgtcattggtcatagtgccacattagggggcatattagacaaagctattgaagctgaggacaaaaagcacggtgatttcttgcgtctggatcatattgagggttatcttgaattgtccgccaagacgaagacttactttgccacagctgttaacttatgggatgctgagtattacatcaaggttgatgatgatgttcatgtcaatatagctacactggcggaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0090D09.1" temp_strand="-" temp_description="C12HBa0090D09.1  AC212766.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0090D09 upload_account_name:italy">
        <position start="36927" stop="35138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36627" g_stop="36393" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36392" i_stop="36301" i_length="92">
            <donor d_prob="0.790" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36300" g_stop="36237" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="299" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36236" i_stop="35755" i_length="482">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35754" g_stop="35682" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="372" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35681" i_stop="35564" i_length="118">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.154" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35563" g_stop="35443" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="493" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35442" i_stop="35308" i_length="135">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35307" g_stop="35291" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="510" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0090D09.1" gen_strand="-" ref_id="SGN-E254578" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0090D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36627" e_stop="36393"/>
          <exon e_start="36300" e_stop="36237"/>
          <exon e_start="35754" e_stop="35682"/>
          <exon e_start="35563" e_stop="35443"/>
          <exon e_start="35307" e_stop="35291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTATCCAAAGATAATTTTGGGATATTAGATAAAACCATTTCAAATTTGGAGATAGAGTTGGCTGAAGCAAAGGCAGCTCACGAGTCGATTCTCAGTGGGGTTCCGATATCAGAAGAGATTGAAAAGGGTGAATCACGAAGAAGAAGAAAATATTTTATGGTGGTAGGAATAAACACTGCATTTAGTAGCAGAAAAAGAAGGGATTCAGTTCGCGCTACATGGATGCCACAAGGTTTAATGACTCTGCCTATGCCTTAACTCGTCTCATGCTGGCATTTGCTTTGTCTGAGTGTTGACATTGTTGATTTTAACATGGTGAAACAGGTGAAAAAAGAAGGAAGCTGGAAGAAGAGAAAGGAATAATCATTCGCTTCGTCATTGGTCATAGGTGGGGGATTTTGCTTCTTTTCAATTAACTAAACCTTTTCTTCATAGTGGTAATCGTTTTTTGAGTTGATGGTCGAAATATCATCATCGTTAATGATAGTTCAGATAGGGAACTCACAAAAATGTAGTAATTCAGGTGTGCTTTAGACCACTATCTCTTAATTTTCTACTCGGAATTGTTTTTATATAATGTAGTTAGATTATAATAACTTCAGTAAAATTTTGTTGCTTTATGATTGCTTCTGAGTGGGCGTTTTTGGAGTTTCCGACATGAGTATAATGATATTTTTGGAGTATCCGAGCAACATAGATTCTGAGTGAACACCTCTTAATCTCTTTAATTGAAGTTGAGTCTGTCCCTATACCATTACATAAAATCCTATCCTCTTTTGTCTGCATCAACTCTTGTTTGCACTCTTGTATTCGATTAAAAGACAATATAAACGTTTAACATGACTAAAAAGCTACAAATTTGTTCTGCAGTGCCACATTAGGGGGCATATTAGACAAAGCTATTGAAGCTGAGGACAAAAAGCACGGTGATTTCTTGCGTCTGGTAATATTTTTCTCTCACATTTCCTTTGATCATTCACTTTACTCTTGTGAACCACATGTTATAATTGATGTATTCACACGTAAAAAAGACGATACATCACTCTGCTGCCTTTTAACAGGATCATATTGAGGGTTATCTTGAATTGTCCGCCAAGACGAAGACTTACTTTGCCACAGCTGTTAACTTATGGGATGCTGAGTATTACATCAAGGTTGATGATGATGTTCATGTCAATATAGGTAACCAAAATATTTCGTAATTTTTCTGCCTTGACATACTTAACACTTAACCAAAACCATCACTTTTCAATGTTATATAGAGATTGTAAGACTTGTTACAGCAAATTCAAGCTTGATTTTTCACTTCTGTTGCAGCTACACTGGCGGAAACA</genome_strand>
        <mrna_strand>CTTGTATCCAAAGATAATTTTGGGATATTAGATAAAACCATTTCAAATTTGGAGATAGAGTTGGCTGAAGCAAAGGCAGCTCACGAGTCGATTCTCAGTGGGGTTCCGATATCAGAAGAGATTGAAAAGGGTGAATCACGAAGAAGAAGAAAATATTTTATGGTGGTAGGAATAAACACTGCATTTAGTAGCAGAAAAAGAAGGGATTCAGTTCGCGCTACATGGATGCCACAAG............................................................................................GTGAAAAAAGAAGGAAGCTGGAAGAAGAGAAAGGAATAATCATTCGCTTCGTCATTGGTCATAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCACATTAGGGGGCATATTAGACAAAGCTATTGAAGCTGAGGACAAAAAGCACGGTGATTTCTTGCGTCTG......................................................................................................................GATCATATTGAGGGTTATCTTGAATTGTCCGCCAAGACGAAGACTTACTTTGCCACAGCTGTTAACTTATGGGATGCTGAGTATTACATCAAGGTTGATGATGATGTTCATGTCAATATAG.......................................................................................................................................CTACACTGGCGGAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E424490" ref_strand="+" ref_description="SGN-E424490 [STM-43-L21]">
      <seq>gtaattttcctcaaactttgttcctaggattcactttttctgtaaaaattatagctttcttggtttgtgggtgtctgagatttggtgttccgtgtccggtactcatattgaagctctgactataatcttgattcgcgggctttctagaaaagcttgaaacgagacgtctgattaagggtgtgtttgatatgtatttcaagaacagaggagcaatagaaaggccttcaagaagtgtagtttctaaaaaatggagtctttttctatgtcttggaagtttttgtgctggaatgttcttcacaaacagaatatggataatttctgaaacaaaaagtggaattacaagaacaactacagttgaagctgaaagattgaaattagtttcagaaggttgcattacaaaatttttgcagcagcaagatataaaacttgtatccaaagataattttgggatattagataaaaccatttcaaatttggagatagagttggctgaagcaaaggcagctcatgagtcgattcttagtggggttccgatatcagaagagattgaaaagggtgaatcacaaagaaaaagaaatattttatggtggtangaataacaccgcgtttagtagcagaannagaagggattcagttcgcgctacatggatgccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0090D09.1" temp_strand="-" temp_description="C12HBa0090D09.1  AC212766.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0090D09 upload_account_name:italy">
        <position start="37990" stop="36096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37690" g_stop="37382" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37381" i_stop="36833" i_length="549">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36832" g_stop="36733" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="404" r_length="100" r_score="0.910"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36732" i_stop="36649" i_length="84">
            <donor d_prob="0.953" d_score="0.92"/>
            <acceptor a_prob="0.741" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36648" g_stop="36396" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="655" r_length="251" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0090D09.1" gen_strand="-" ref_id="SGN-E424490" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0090D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E424490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37690" e_stop="37382"/>
          <exon e_start="36832" e_stop="36733"/>
          <exon e_start="36648" e_stop="36396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATTTTCCTCAAACTTTGTTCCTAGGATTCACTTTTTCTGTAAAAAAGATTATAGCTTTATTGGTTATTGGGTGTCTGAGATTTTGGTTTTCCGTGTCTGGTACTCATATTGAAGCTCTGACTGTAATCTTGATTCGCGGGCTTTCTAGAAGAGTTCAAAATCGAGACGTCTGGTTAAGGGTGTGTTTGATATGTATTTCAAGAACAGAGGAGCAACAGAAAGGCCATCAAGAAGTGTAGTTTCAAAAAAATGGAGTCTTTTTCTATGTCTTGGAAGTTTTTGTGCTGGAATGTTCTTCACAAACAGGTAAAAAAGAAATCTTTTTTTTTTTAAATAAAGATTGAATTTTTATAGTGATATTTCACTTTTCTTGTTTTGATTTGTTACATTTTTATGTACTGGTCAATTGGATTTTACTATTTGATATGTTACATAAGTCTTTCTGTTTGATTTGCTAGATTTTAGTGATTCAGAATGAACTAACTTTTGAATTTTTGTTATAGCGAAATACTGTTATAGAAAACATGAGAATATAACATAACATGAAAAATCGATTCAAGAAAAAAACTTGACTGTTATTGTGAAATGTTATTATAGATTAGAAACTGACTTTTATAGATAGGTCTGATCGTAGATTTGCGATATCTTCATTACTTCTGTTTTCTACCTTTAAATCTACTTTGGTATGTGTTAGTTCAACCGAGGGTGTTTAGGAAACAGTTTTTCTACGTCCACGAGATAGAGGTAAGATATGCGTACACTCTATCCTCCCCAGACCCCATCTGTGGGATAAAATCCCGGTTATGTTGTTGTTCAATGTTTATTTGACAGTAATTTAAGCATTTATCATTGCAGAATGTGGATAGTTTCTGAAACAAAAGAAGGAATTACAAGAACAACTACAGTTGAAGCTGAAAGATTGAAATTAATTTCAGAGAATTGCATTACAAAATTTGTAAGTAGTCCTAATTCTAACTTGAAGCTTATTTTCTGTTTATTTACCTCAACAAAACATCTTAACCTTGACTTTTTTGTTTAGTTGCAGCAGCAAGATGTAAAACTTGTATCCAAAGATAATTTTGGGATATTAGATAAAACCATTTCAAATTTGGAGATAGAGTTGGCTGAAGCAAAGGCAGCTCACGAGTCGATTCTCAGTGGGGTTCCGATATCAGAAGAGATTGAAAAGGGTGAATCACGAAGAAGAAGAAAATATTTTATGGTGGTAGGAATAAACACTGCATTTAGTAGCAGAAAAAGAAGGGATTCAGTTCGCGCTACATGGATGCCAC</genome_strand>
        <mrna_strand>GTAATTTTCCTCAAACTTTGTTCCTAGGATTCACTTTTTCTGT--AAAA-ATTATAGCTTTCTTGGTTTGTGGGTGTCTGAGA-TTTGGTGTTCCGTGTCCGGTACTCATATTGAAGCTCTGACTATAATCTTGATTCGCGGGCTTTCTAGAAAAGCTTGAAA-CGAGACGTCTGATTAAGGGTGTGTTTGATATGTATTTCAAGAACAGAGGAGCAATAGAAAGGCCTTCAAGAAGTGTAGTTTCTAAAAAATGGAGTCTTTTTCTATGTCTTGGAAGTTTTTGTGCTGGAATGTTCTTCACAAACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATGGATAATTTCTGAAACAAAAAGTGGAATTACAAGAACAACTACAGTTGAAGCTGAAAGATTGAAATTAGTTTCAGAAGGTTGCATTACAAAATTT....................................................................................TTGCAGCAGCAAGATATAAAACTTGTATCCAAAGATAATTTTGGGATATTAGATAAAACCATTTCAAATTTGGAGATAGAGTTGGCTGAAGCAAAGGCAGCTCATGAGTCGATTCTTAGTGGGGTTCCGATATCAGAAGAGATTGAAAAGGGTGAATCACAAAGAAAAAG-AAATATTTTATGGTGGTANGAAT-AACACCGCGTTTAGTAGCAGAANNAGAAGGGATTCAGTTCGCGCTACATGGATGCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452506" ref_strand="+" ref_description="SGN-E452506 [cSTS-17-E15]">
      <seq>gtaattttcctcaaactttgttcctaggattcactttttctgtaaaaattatagctttcttggtttgtgggtgtctgagatttggtgttccgtgtccggtactcatattgaagctctgactataatcttgattcgcgggctttctagaaaagcttgaaacgagacgtctgattaagggtgtgtttgatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0090D09.1" temp_strand="-" temp_description="C12HBa0090D09.1  AC212766.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0090D09 upload_account_name:italy">
        <position start="37990" stop="37195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37690" g_stop="37495" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0090D09.1" gen_strand="-" ref_id="SGN-E452506" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>196</cumulative_length_of_scored_exons>
        <coverage percentage="1.026" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0090D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E452506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37690" e_stop="37495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATTTTCCTCAAACTTTGTTCCTAGGATTCACTTTTTCTGTAAAAAAGATTATAGCTTTATTGGTTATTGGGTGTCTGAGATTTTGGTTTTCCGTGTCTGGTACTCATATTGAAGCTCTGACTGTAATCTTGATTCGCGGGCTTTCTAGAAGAGTTCAAAATCGAGACGTCTGGTTAAGGGTGTGTTTGATATG</genome_strand>
        <mrna_strand>GTAATTTTCCTCAAACTTTGTTCCTAGGATTCACTTTTTCTGT--AAAA-ATTATAGCTTTCTTGGTTTGTGGGTGTCTGAGA-TTTGGTGTTCCGTGTCCGGTACTCATATTGAAGCTCTGACTATAATCTTGATTCGCGGGCTTTCTAGAAAAGCTTGAAA-CGAGACGTCTGATTAAGGGTGTGTTTGATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274266" ref_strand="-" ref_description="SGN-E274266 [cLEN-15-F9]">
      <seq>caagctcatcgctagacaattcattcccatgtctggaactttcatcttgaatggcatagatcacaaatcccaactgttgttgctcaagtctctgaattcacaaatagcatttcttcagttttcaatcttcagatgagtccgacagcagcatgtgaaaaggaaagtttgtcacacttcctttgattggcaggaaatttaggatcagtgaaagatttttaagaaagagagtacatttcttgacaagcgcctaggacgctgatccattggtaacagcacaacacgtgatgtgtggtttaggtgcacgtcacgagtttgaacatgctgtggactaaaatgatagttttagcttttttagaaacagatatataggggttgtttcattttgatatcctatttcatctcatttttcttaacccgcagtctgcaatttgatctaaaaaaaaaaaaaaaaaaaaagaaaaacgaggctagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0090D09.1" temp_strand="-" temp_description="C12HBa0090D09.1  AC212766.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0090D09 upload_account_name:italy">
        <position start="41273" stop="22589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40975" g_stop="40873" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40872" i_stop="40604" i_length="269">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.099" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40603" g_stop="40264" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="443" r_length="340" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40263" i_stop="38946" i_length="1318">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38945" g_stop="38912" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="476" r_length="33" r_score="0.706"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0090D09.1" gen_strand="-" ref_id="SGN-E274266" ref_strand="-">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0090D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274266" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="40975" e_stop="40873"/>
          <exon e_start="40603" e_stop="40264"/>
          <exon e_start="38945" e_stop="38912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCTCATCACTAGACAATTCATTCCCATGTCTGGAACTTTCATCTTTAATGGCATAGATCACAAATCTCAACTGTTGTTGCTCTAGTCTCTGAATTCACAGGCATGTTCTTTCTTTCACCTTTTATTATCTTACTGTTGTTACTGCTTATGTCTTCATAAATTTTGGGTTTTTGCTTTCTTTGAGCCGAGGGTCTATCGAAACAACCTCTCTACCTGCCAAGGTAGGGGTAAGGTCTACGTACATTCTACCCTCCCTAAACCTCATTCGTGGGAGTATGTTATTGTTGTTTTCTTCTTTCGTTCACCCTTACATGGTATTCTTAGGTTCACCGGGCCTGATAGTTTTTTTGCTTTCACTCTCCTTGGCAGATAGCATTTCTTCAGTTTTCAATCTTCAGATGAGTCCTACAGCAGCATGTGAAAAGGAAAGTTTGTCATACTTCCTTTGATTTGCAGGAAATTTAGGATCAGTGAAAGATTTTTAAGAAAGAGAGTACATTTCTTGACAAGCGCCTAGGACGCTGATCCATTGGTAACAGCACAACACGTGATGTGTGGTTTAGGTGCACGTCACGAGTTTGAACATGCTGTGGACTAAAATGATAGTTTTAGCTTTTTTAGAAACAGATATATAGGGGTTGTTTCATTTTGATATCCTATTTCATCTCATTTTTCTTAACCTGCAGTCTGCAATTTGATCTAACTAAAAGCTCATTTCCCTCTATTTATAATACTAGTTCTCGACACGTGCATCGCACGTGTATCCCAAATAAAAATTAATTTAAAAAAATGAAAAAGGATGTAATAAACTATTAGAAGAACATGATGTTTTTTTTTTAGTGTTCTCTCGATATTTTCAATCTACTGCACATTAGATAAGTCTGCAAAGCTTACCCATTTATAAGCAATTAAATGTACAGACAGTGATCAATAACTAAAAATTCATGAAATTGATCAATCAAAAGGTGATTAGATATCAATATTTGTTTTATATTCCAAGAAAGACGCATCAAGTTAAAAAGGGAAAATGCGACGTTATTTAAAGTCTTCTTGTATTCTTAATGTGTGTTGTTACAAATGTAACTACTTCCTTAAAAACTTTCAGATATACTCAGACTTACATTTATAGGCTTACAACTACTATCCATCACTGTAGAGAAGACTTGGAGTTTCTACATTTGTTGAAGAAAATGTGATGTATTTTGTTAGCAAACAGCTGCAATTTCAATTTATTATTAGTAGTTTAAAAGTTTATAATATGGTTTCTTTTCTGCGGGAAACTATGCTAGAGAGTTTCAAAAAGAGTTGATCATCATTCAGCATCAAACCATGTGTACAACACTCAATTTTTGATATGTGTGATTATACCTTTCAAGCTATTTAATTGAAACTTTATTAGTGTTCATCCTATTTCGTTGTTTCACACATAGTAATTGAGCTGAACTTCTCATTTTGCTCCTCTATTATGTAATTCAAATATTACTACTTAATTAGATATCTAATTTATATTTGGGTAAAGTATTTTATTAATTTTTAATTTAATATAAGAGCAAAATAGTAATTCAACTTTATACTTTAGAGCTTCATACTTATAATAATATATGATACATTTATCTCTGATCTCTTTGCTTTTAGTTCAATTTGTTTCTTTAGTCATGATCAAGTGATACATTTACGTACGAAAGACACATATTTTACTTTCAACGTCAAATATAAACACCAAATACGAGTAAACTTTGTACTTCTGAATAATTACTTCCACTCTAGATTCACCACTATCTATAACATGATTCCTGGTGCATGGTGACCACTTTGAACTTGAGATTGGACCACACTTGATATTGTTGACTTATCTCCTTGCACTAGTGATTAATCTCCCATTAATTCACAATTTTATTAAATGACACATATTAAGCTACACTTATAGCCTCACTAAAATAAATTAATTACTATAACCAATTTATATGATTTTTATTAAATATAAAGACCATGTGTCAATCTCTTTGTTGTTACTATTTTGGTATCTAAAATAAAAAAATAGAAATAACAAAGAAAGTTTGT</genome_strand>
        <mrna_strand>CAAGCTCATCGCTAGACAATTCATTCCCATGTCTGGAACTTTCATCTTGAATGGCATAGATCACAAATCCCAACTGTTGTTGCTCAAGTCTCTGAATTCACAA.............................................................................................................................................................................................................................................................................ATAGCATTTCTTCAGTTTTCAATCTTCAGATGAGTCCGACAGCAGCATGTGAAAAGGAAAGTTTGTCACACTTCCTTTGATTGGCAGGAAATTTAGGATCAGTGAAAGATTTTTAAGAAAGAGAGTACATTTCTTGACAAGCGCCTAGGACGCTGATCCATTGGTAACAGCACAACACGTGATGTGTGGTTTAGGTGCACGTCACGAGTTTGAACATGCTGTGGACTAAAATGATAGTTTTAGCTTTTTTAGAAACAGATATATAGGGGTTGTTTCATTTTGATATCCTATTTCATCTCATTTTTCTTAACCCGCAGTCTGCAATTTGATCTAAAAAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAGAAA-AACGAGGCTAGTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E427558" ref_strand="+" ref_description="SGN-E427558 [STM-48-N17]">
      <seq>tgtttctaaaacagctaaaactatcagtttagtccgcagcatgttcaaactcatgacgtgcacctaaaccacacatcacatgttgcgttgttaccactggaccagcatcccaggcgcttgtcaagaaatgtactctcttgttaaagtctttcactgatcctaaatttcctgcaaatcaaaggaagtatgacaaactgtccttttcacatgctgctgtagaactcatctgaagattgaaaactgatgaaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0090D09.1" temp_strand="+" temp_description="C12HBa0090D09.1  AC212766.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0090D09 upload_account_name:italy">
        <position start="40047" stop="40900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40347" g_stop="40600" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0090D09.1" gen_strand="+" ref_id="SGN-E427558" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>254</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0090D09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E427558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40347" e_stop="40600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTCTAAAAAAGCTAAAACTATCATTTTAGTCCACAGCATGTTCAAACTCGTGACGTGCACCTAAACCACACATCACGTGTTGTGCTGTTACCAATGGATCAGCGTCCTAGGCGCTTGTCAAGAAATGTACTCTCTTTCTTAAAAATCTTTCACTGATCCTAAATTTCCTGCAAATCAAAGGAAGTATGACAAACTTTCCTTTTCACATGCTGCTGTAGGACTCATCTGAAGATTGAAAACTGAAGAAATGC</genome_strand>
        <mrna_strand>TGTTTCTAAAACAGCTAAAACTATCAGTTTAGTCCGCAGCATGTTCAAACTCATGACGTGCACCTAAACCACACATCACATGTTGCGTTGTTACCACTGGACCAGCATCCCAGGCGCTTGTCAAGAAATGTACTCTC-TTGTT-AAAGTCTTTCACTGATCCTAAATTTCCTGCAAATCAAAGGAAGTATGACAAACTGTCCTTTTCACATGCTGCTGTAGAACTCATCTGAAGATTGAAAACTGATGAAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244107" ref_strand="+" ref_description="SGN-E244107 [cLEE-1-G9]">
      <seq>tctttatattcttcttcgagcagctgaccggtttgctgcgaactataacaaatttcctggacaatttgatggtgagatggatgaggatatatcccggctgaaaactacagctgttggcctactcaatgaccttggttgcaatggttcttctgtatcagaggaccttattaatgagatgtgtcggtatggtgcttcggagcttcatgttgtagctgcctttgttggaggagtcacatcacaagaagtgatcaagctcatcactagacaattcattcccatgtctggaactttcatctttaatggcatagatcacaaatctcaactgttgttgctctagtctctgaattcacagatagcatttcttcagttttcaatcttcagatgagtcctacagcagcatgtgaaaaggaaagtttgtcatacttcctttgatttgcaggaaatttaggatcagtgaaagatttttaagaaagagagtacatttcttgacaagcgcctaggacgctgatccattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0090D09.1" temp_strand="-" temp_description="C12HBa0090D09.1  AC212766.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0090D09 upload_account_name:italy">
        <position start="41725" stop="40140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41425" g_stop="41354" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41353" i_stop="41265" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.685" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41264" g_stop="41084" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="253" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41083" i_stop="40972" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40971" g_stop="40873" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="352" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40872" i_stop="40604" i_length="269">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.099" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40603" g_stop="40440" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="516" r_length="164" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0090D09.1" gen_strand="-" ref_id="SGN-E244107" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0090D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41425" e_stop="41354"/>
          <exon e_start="41264" e_stop="41084"/>
          <exon e_start="40971" e_stop="40873"/>
          <exon e_start="40603" e_stop="40440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTATATTCTTCTTCGAGCAGCTGACCGGTTTGCTGCGAACTATAACAAATTTCCTGGACAATTTGATGGGTAAGGACTTGTGCTTTCTCGTCCATACAATTCAATTTTTAAAGGAAAAGTAAATTTATGGCCGTCTGACCTTATGAATTTCTTGGTAGTGAGATGGATGAGGATATATCCCGGCTGAAAACTACAGCTGTTGGCCTACTCAATGACCTTGGTTGCAATGGTTCTTCTGTATCAGAGGACCTTATTAATGAGATGTGTCGGTATGGTGCTTCGGAGCTTCATGTTGTAGCTGCCTTTGTTGGAGGAGTCACATCACAAGAAGTGATCAAGGTTTGTGTCTCCTTCAATTTTGAACTTGAATCTTGCTTTTTATTCGAAACTTCTACTTTTCTGTATATACAGCCATGTTTGATCGGAGCAGTAATCTAAGTTCTATATGCAGCTCATCACTAGACAATTCATTCCCATGTCTGGAACTTTCATCTTTAATGGCATAGATCACAAATCTCAACTGTTGTTGCTCTAGTCTCTGAATTCACAGGCATGTTCTTTCTTTCACCTTTTATTATCTTACTGTTGTTACTGCTTATGTCTTCATAAATTTTGGGTTTTTGCTTTCTTTGAGCCGAGGGTCTATCGAAACAACCTCTCTACCTGCCAAGGTAGGGGTAAGGTCTACGTACATTCTACCCTCCCTAAACCTCATTCGTGGGAGTATGTTATTGTTGTTTTCTTCTTTCGTTCACCCTTACATGGTATTCTTAGGTTCACCGGGCCTGATAGTTTTTTTGCTTTCACTCTCCTTGGCAGATAGCATTTCTTCAGTTTTCAATCTTCAGATGAGTCCTACAGCAGCATGTGAAAAGGAAAGTTTGTCATACTTCCTTTGATTTGCAGGAAATTTAGGATCAGTGAAAGATTTTTAAGAAAGAGAGTACATTTCTTGACAAGCGCCTAGGACGCTGATCCATTGG</genome_strand>
        <mrna_strand>TCTTTATATTCTTCTTCGAGCAGCTGACCGGTTTGCTGCGAACTATAACAAATTTCCTGGACAATTTGATGG.........................................................................................TGAGATGGATGAGGATATATCCCGGCTGAAAACTACAGCTGTTGGCCTACTCAATGACCTTGGTTGCAATGGTTCTTCTGTATCAGAGGACCTTATTAATGAGATGTGTCGGTATGGTGCTTCGGAGCTTCATGTTGTAGCTGCCTTTGTTGGAGGAGTCACATCACAAGAAGTGATCAAG................................................................................................................CTCATCACTAGACAATTCATTCCCATGTCTGGAACTTTCATCTTTAATGGCATAGATCACAAATCTCAACTGTTGTTGCTCTAGTCTCTGAATTCACAG.............................................................................................................................................................................................................................................................................ATAGCATTTCTTCAGTTTTCAATCTTCAGATGAGTCCTACAGCAGCATGTGAAAAGGAAAGTTTGTCATACTTCCTTTGATTTGCAGGAAATTTAGGATCAGTGAAAGATTTTTAAGAAAGAGAGTACATTTCTTGACAAGCGCCTAGGACGCTGATCCATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237575" ref_strand="+" ref_description="SGN-E237575 [cLED-19-H14]">
      <seq>taatgctgagtggaaataacgataaacactcaccctttgaagcaatttagctgttgggatggtgtaaactggatttttgtgttaacagttgctttctgatgtgtctctcgattctctttccattagtagatcatctggcctgtaaatgtaggggggaaataaagaaatgcgaagttaaagacttgttgctgagattaatagtttaatacaatactctttgacaattaaacaaaatgaagcttaaggagagtttgacttggtcatttagtttgacattaaagacatcagatattctgaatgggtgctcaatttttttcttttctttctgaactataaatgtttatggcagtactgctgcgggtctttatattcttcttcgagcagctgaccggtttgctgcgaactataacaaatttcctggacaatttgatggtgagatggatgaggatatatcccggctgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0090D09-eZc9V/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0090D09.1" temp_strand="-" temp_description="C12HBa0090D09.1  AC212766.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0090D09 upload_account_name:italy">
        <position start="41865" stop="40932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41786" g_stop="41354" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41353" i_stop="41265" i_length="89">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.685" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41264" g_stop="41232" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="466" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0090D09.1" gen_strand="-" ref_id="SGN-E237575" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0090D09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41786" e_stop="41354"/>
          <exon e_start="41264" e_stop="41232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGCTGAGTGGAAATAACGATAAACACTCACCCTTTGAAGCAATTTAGCTGTTGGGATGGTGTAAACTGGATTTTTGTGTTAACAGTTGCTTTCTGATGTGTCTCTCGATTCTCTTTCCATTAGTAGATCATCTGGCCTGTAAATGTAGGGGGGAAATAAAGAAATGCGAAGTTAAAGACTTGTTGCTGAGATTAATAGTTTAATACAATACTCTTTGACAATTAAACAAAATGAAGCTTAAGGAGAGTTTGACTTGGTCATTTAGTTTGACATTAAAGACATCAGATATTCTGAATGGGTGCTCAATTTTTTTCTTTTCTTTCTGAACTATAAATGTTTATGGCAGTACTGCTGCGGGTCTTTATATTCTTCTTCGAGCAGCTGACCGGTTTGCTGCGAACTATAACAAATTTCCTGGACAATTTGATGGGTAAGGACTTGTGCTTTCTCGTCCATACAATTCAATTTTTAAAGGAAAAGTAAATTTATGGCCGTCTGACCTTATGAATTTCTTGGTAGTGAGATGGATGAGGATATATCCCGGCTGAAAAC</genome_strand>
        <mrna_strand>TAATGCTGAGTGGAAATAACGATAAACACTCACCCTTTGAAGCAATTTAGCTGTTGGGATGGTGTAAACTGGATTTTTGTGTTAACAGTTGCTTTCTGATGTGTCTCTCGATTCTCTTTCCATTAGTAGATCATCTGGCCTGTAAATGTAGGGGGGAAATAAAGAAATGCGAAGTTAAAGACTTGTTGCTGAGATTAATAGTTTAATACAATACTCTTTGACAATTAAACAAAATGAAGCTTAAGGAGAGTTTGACTTGGTCATTTAGTTTGACATTAAAGACATCAGATATTCTGAATGGGTGCTCAATTTTTTTCTTTTCTTTCTGAACTATAAATGTTTATGGCAGTACTGCTGCGGGTCTTTATATTCTTCTTCGAGCAGCTGACCGGTTTGCTGCGAACTATAACAAATTTCCTGGACAATTTGATGG.........................................................................................TGAGATGGATGAGGATATATCCCGGCTGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>33</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="10365" PGL_stop="5420"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10365" e_stop="9862"/>
            <exon e_start="5695" e_stop="5420"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10365" e_stop="9862" e_length="504"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="9861" i_stop="5696" i_length="4166"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5695" e_stop="5420" e_length="276"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10365" stop="9862"/>
              <exon start="5695" stop="5629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10355" stop="9862"/>
              <exon start="5695" stop="5520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10321" stop="9862"/>
              <exon start="5695" stop="5663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10311" stop="9862"/>
              <exon start="5695" stop="5653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E583406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10294" stop="9862"/>
              <exon start="5695" stop="5670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10170" stop="9862"/>
              <exon start="5695" stop="5506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10147" stop="9862"/>
              <exon start="5695" stop="5420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270798" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAGTCTTCTGCCAGGCGTAAAGGCCGCGTGTATACACAGAATCAACACCATCTGTACACTGTATTCACAGTTTTTTCTGAAAAAAATCAACACCCTTTTCACCAAAAATCAAACTTTATTGTACAAAAATCCTTCTTAACTAGTTAAGAAGAGCCCCTTTTGGTGAAATTGTTGAATCACAGAAAAAAAAAGCAGTTGATTTGGTGGTGTATTCAAAATGTTACCTCAAGTGCAGCTTTTGTTCATGGTGGTGTTCTTGGAAATGGGGTTGATTTTGATGTTTCTGTTCAGAACCCCTTTGAGGAAACTGATAATTATGAGTCTTGATCGTGTTAAAAGAGGCAGTGGACCGTTGATTGTTAAATCTGTAGCAGCTACTGTTCTTGTGATCATGATTTATACTGTTTATTCTATTAAGGAATTGCAGTCTCGGCCTGCTGATTCTGTGAATCCTACCGATCAAATCCTTCTTGCTCATCAGATTCTTGAAGCTGCTCTTATGG : GATTCTCTCTATTCCTCGGACTGATGATTGACAGGCTACACCATTACATAAGGGAGCTTCGATTACTAAGGAAGACCATGGAGGCTGTGAAGAAGCAGGATCGTACATTGGACAACATCAAGAACGGCGAGGCCAGTACCTTAAGGGATGAAATCTCCTCCTTGAGGAACAGGATGAAGCAGCTGGAATCAGAATCGGAGGCAAAAGAAAAGGAGGTGCAATCTCAGAGAGCAAATTCTGATTCTCTCAAGGGTCAATCTGAAAAATTGCTGCTTG</gDNA_template>
            <first_frame> Q  V  F  C  Q  A  *  R  P  R  V  Y  T  E  S  T  P  S  V  H  C  I  H  S  F  F  *  K  K  S  T  P  F  S  P  K  I  K  L  Y  C  T  K  I  L  L  N  *  L  R  R  A  P  F  G  E  I  V  E  S  Q  K  K  K  A  V  D  L  V  V  Y  S  K  C  Y  L  K  C  S  F  C  S  W  W  C  S  W  K  W  G  *  F  *  C  F  C  S  E  P  L  *  G  N  *  *  L  *  V  L  I  V  L  K  E  A  V  D  R  *  L  L  N  L  *  Q  L  L  F  L  *  S  *  F  I  L  F  I  L  L  R  N  C  S  L  G  L  L  I  L  *  I  L  P  I  K  S  F  L  L  I  R  F  L  K  L  L  L  W  :  D  S  L  Y  S  S  D  *  *  L  T  G  Y  T  I  T  *  G  S  F  D  Y  *  G  R  P  W  R  L  *  R  S  R  I  V  H  W  T  T  S  R  T  A  R  P  V  P  *  G  M  K  S  P  P  *  G  T  G  *  S  S  W  N  Q  N  R  R  Q  K  K  R  R  C  N  L  R  E  Q  I  L  I  L  S  R  V  N  L  K  N  C  C  L </first_frame>
            <second_frame>  K  S  S  A  R  R  K  G  R  V  Y  T  Q  N  Q  H  H  L  Y  T  V  F  T  V  F  S  E  K  N  Q  H  P  F  H  Q  K  S  N  F  I  V  Q  K  S  F  L  T  S  *  E  E  P  L  L  V  K  L  L  N  H  R  K  K  K  Q  L  I  W  W  C  I  Q  N  V  T  S  S  A  A  F  V  H  G  G  V  L  G  N  G  V  D  F  D  V  S  V  Q  N  P  F  E  E  T  D  N  Y  E  S  *  S  C  *  K  R  Q  W  T  V  D  C  *  I  C  S  S  Y  C  S  C  D  H  D  L  Y  C  L  F  Y  *  G  I  A  V  S  A  C  *  F  C  E  S  Y  R  S  N  P  S  C  S  S  D  S  *  S  C  S  Y  G :   I  L  S  I  P  R  T  D  D  *  Q  A  T  P  L  H  K  G  A  S  I  T  K  E  D  H  G  G  C  E  E  A  G  S  Y  I  G  Q  H  Q  E  R  R  G  Q  Y  L  K  G  *  N  L  L  L  E  E  Q  D  E  A  A  G  I  R  I  G  G  K  R  K  G  G  A  I  S  E  S  K  F  *  F  S  Q  G  S  I  *  K  I  A  A   </second_frame>
            <third_frame>   S  L  L  P  G  V  K  A  A  C  I  H  R  I  N  T  I  C  T  L  Y  S  Q  F  F  L  K  K  I  N  T  L  F  T  K  N  Q  T  L  L  Y  K  N  P  S  *  L  V  K  K  S  P  F  W  *  N  C  *  I  T  E  K  K  S  S  *  F  G  G  V  F  K  M  L  P  Q  V  Q  L  L  F  M  V  V  F  L  E  M  G  L  I  L  M  F  L  F  R  T  P  L  R  K  L  I  I  M  S  L  D  R  V  K  R  G  S  G  P  L  I  V  K  S  V  A  A  T  V  L  V  I  M  I  Y  T  V  Y  S  I  K  E  L  Q  S  R  P  A  D  S  V  N  P  T  D  Q  I  L  L  A  H  Q  I  L  E  A  A  L  M   : G  F  S  L  F  L  G  L  M  I  D  R  L  H  H  Y  I  R  E  L  R  L  L  R  K  T  M  E  A  V  K  K  Q  D  R  T  L  D  N  I  K  N  G  E  A  S  T  L  R  D  E  I  S  S  L  R  N  R  M  K  Q  L  E  S  E  S  E  A  K  E  K  E  V  Q  S  Q  R  A  N  S  D  S  L  K  G  Q  S  E  K  L  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0090D09.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10165" stop="9862"/>
                    <exon start="5695" stop="5421"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FGGVFKMLPQVQLLFMVVFLEMGLILMFLFRTPLRKLIIMSLDRVKRGSGPLIVKSVAATVLVIMIYTVYSIKELQSRPADSVNPTDQILLAHQILEAALMGFSLFLGLMIDRLHHYIRELRLLRKTMEAVKKQDRTLDNIKNGEASTLRDEISSLRNRMKQLESESEAKEKEVQSQRANSDSLKGQSEKLLL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="16029" PGL_stop="21685"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16029" e_stop="16390"/>
            <exon e_start="17673" e_stop="17843"/>
            <exon e_start="17998" e_stop="18143"/>
            <exon e_start="18672" e_stop="18805"/>
            <exon e_start="19297" e_stop="19877"/>
            <exon e_start="20407" e_stop="20517"/>
            <exon e_start="20589" e_stop="20717"/>
            <exon e_start="21071" e_stop="21395"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.151" e_score="0.997"/>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.615" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.926" e_score="0.950"/>
          <exon-intron don_prob="0.990" acc_prob="0.989" e_score="0.991"/>
          <exon-intron don_prob="0.926" acc_prob="0.999" e_score="0.977"/>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="16029" e_stop="16390" e_length="362"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.151">
            <gDNA_intron_boundary i_start="16391" i_stop="17672" i_length="1282"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17673" e_stop="17843" e_length="171"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="17844" i_stop="17997" i_length="154"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17998" e_stop="18143" e_length="146"/>
          </exon>
          <intron i_serial="3" don_prob="0.615" acc_prob="0.000">
            <gDNA_intron_boundary i_start="18144" i_stop="18671" i_length="528"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="18672" e_stop="18805" e_length="134"/>
          </exon>
          <intron i_serial="4" don_prob="0.979" acc_prob="1.000">
            <gDNA_intron_boundary i_start="18806" i_stop="19296" i_length="491"/>
          </intron>
          <exon e_serial="5" e_score="0.950">
            <gDNA_exon_boundary e_start="19297" e_stop="19877" e_length="581"/>
          </exon>
          <intron i_serial="5" don_prob="0.969" acc_prob="0.926">
            <gDNA_intron_boundary i_start="19878" i_stop="20406" i_length="529"/>
          </intron>
          <exon e_serial="6" e_score="0.991">
            <gDNA_exon_boundary e_start="20407" e_stop="20517" e_length="111"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="0.989">
            <gDNA_intron_boundary i_start="20518" i_stop="20588" i_length="71"/>
          </intron>
          <exon e_serial="7" e_score="0.977">
            <gDNA_exon_boundary e_start="20589" e_stop="20717" e_length="129"/>
          </exon>
          <intron i_serial="7" don_prob="0.926" acc_prob="0.999">
            <gDNA_intron_boundary i_start="20718" i_stop="21070" i_length="353"/>
          </intron>
          <exon e_serial="8" e_score="0.923">
            <gDNA_exon_boundary e_start="21071" e_stop="21395" e_length="325"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16029" stop="16390"/>
              <exon start="17673" stop="17792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17722" stop="17843"/>
              <exon start="17998" stop="18143"/>
              <exon start="18672" stop="18805"/>
              <exon start="19297" stop="19585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18109" stop="18143"/>
              <exon start="18672" stop="18805"/>
              <exon start="19297" stop="19762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18109" stop="18143"/>
              <exon start="18672" stop="18805"/>
              <exon start="19297" stop="19737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18109" stop="18143"/>
              <exon start="18672" stop="18805"/>
              <exon start="19297" stop="19534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18672" stop="18805"/>
              <exon start="19297" stop="19636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18710" stop="18805"/>
              <exon start="19297" stop="19740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18785" stop="18805"/>
              <exon start="19297" stop="19877"/>
              <exon start="20407" stop="20517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19721" stop="19877"/>
              <exon start="20407" stop="20517"/>
              <exon start="20589" stop="20717"/>
              <exon start="21071" stop="21395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735902" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATTCTAGAATCATCTACTAACTTCCAATCAGTTACCCTAAATTCTCCCATCCAGAACCCTACACCTGATCATGAGCCAAACGTCGACATTTATGAAGTTATACGAGCTTCGGATTGTGGTATTGGTCGGGTATTGGAAAATTTAGGGCTAAGATTGCGGAGGGAATGGTTAGAATCATGTGTTGGAGGACTTGAAGGATCAGTAGTAGGAGAGTTTTCTGGATTGGATGATACGACCAAGGCGAAACTTTGTTTCGAGCAGTTTTTGTACTCGGATATGATTTTTTGTGGTGCAGGAATGCTTCCAAGGGACGTTCACAAGCTGCATTTGGTTGATCTTAAAGGGCCCTTTGTTCTTCAG : GTAGATGAGATTGTGAATATCAGTTGTCCTCTTCGAGATAGGTATCAGAAAGTAGCTGCTGGAATAAAGAGGTGTCTGAAATTGTCCATGACTGATGGCATTCAGCGAGTGTTTGGGATGGAGTACAGGCCTATAAAAGATCTCGATGTTCTAGCTCCTTCTGGACTGAAG : GTTGCTATCTGTAATGTTCATGTTAGGCATGGAATTCTGATGTTGGTCCCTGAAGTTATTGAAGTTCTGGGTGGGATGGTGGAAGACTTAGAAGAAGCAAGGAAGCGGCTAGTTAATGAAATAAATAAGCCACCAAGGGGGAAAAG : AACAAGGTCTGGTGTGGTTCCTCCTTTGGCAACTAGAGCTATTGCTGCTGCATGGCCACGAGAAGGTGTTACTGTTCCAGAGCACTCTGATACTTCCTCAAGACAAAATATGCAATTTCAGGTTCATGAACGAG : GAACATCTGGCATTGCTACTACTGCAAGTGAAGAAATTCATCCCGTTAGATCTGGGCTACCATCTTCTACGACATTCATCACTCCTGTTTATAGAAGAGAGGCTCAATCTAATATCCCATCTACTCCAGCTGTTTCTGTCCCATTCAATAGGAACGCTGAACCTACCTTTTCATCTGATGCAGCTAGTCATGCAGAGGATATCCATATGGCTGACATGACCACTGAAGACATTGATGTTGCAATTAGAAGGGAACATAATGACACTGTCCTTTCATCTTTGTCTTCCATGGATGTGGAGGAACTTTTGTCAGATGTTAGAAGTGACCCTACCACACCTGCCAGTAGCAGGACCAGAGGAAGCGTTTGTGTGTCTAGCGGTAGTTTCCATAATGAAGATGTAACACCAGATACATTGTCTACTGCAGCAATTGACGTTGATCAAATTGATTTGGTTGATGAATTGGACCATCCATATATACTTTCTGGAGCGAAGGAAAACCCTTTCACTTACTTAGCTAGTCTGTCAGCTAAGCAGGCTGGTGTGAATGGCAGTGCTTCCACTGTTACAGGAAAAATTAAG : TGCTTTCTTACTGGTGTGAAGGGCTTTCAGTATAAACAGAGTAGTAAATACGAGCTTCGGGTTTATGTTGATGATGGCAGCCTAATCTCTGAGATCCTTATAGATCATGCT : CTTGTGCAGGAAAAAATAGGCTTTTCTCCTGCAGAGGTAAATGCTGCTCTTAGTTCTTCAGATGGCAAACGAGTCAGTGACACGAAGGAGACTCTGAAATGTTTCCAGAAATTCTTGATTAATTTTGAG : GGAACAATGCTTGTTCATTTGAATGAAGAATCTCCAATTCCAGTTGCTACTGAAATGAACCAGGGGTGCTCTGCCTCTGATGCATGGTTGCTTCTCAAAAGACTAAAGCCTTCTACTTCTCCGCGACAACATCATCTTCATCACTCAGAAACCATCAATTTATCCCCTTGATGTCTCGTTCATTCTATGGAGAATTTCAAAACCACGAGAGCAAGGTGAGTTACAGAGTGACATTGCTCAATTCAGAAAGTTGTTGCTGACGCCCTCAGAAGCAATGGCGTAAATGCAGAAATAGTTCACCTGTGATTCAAACAATGAAATGACT</gDNA_template>
            <first_frame> K  F  *  N  H  L  L  T  S  N  Q  L  P  *  I  L  P  S  R  T  L  H  L  I  M  S  Q  T  S  T  F  M  K  L  Y  E  L  R  I  V  V  L  V  G  Y  W  K  I  *  G  *  D  C  G  G  N  G  *  N  H  V  L  E  D  L  K  D  Q  *  *  E  S  F  L  D  W  M  I  R  P  R  R  N  F  V  S  S  S  F  C  T  R  I  *  F  F  V  V  Q  E  C  F  Q  G  T  F  T  S  C  I  W  L  I  L  K  G  P  L  F  F  R :   *  M  R  L  *  I  S  V  V  L  F  E  I  G  I  R  K  *  L  L  E  *  R  G  V  *  N  C  P  *  L  M  A  F  S  E  C  L  G  W  S  T  G  L  *  K  I  S  M  F  *  L  L  L  D  *  R :   L  L  S  V  M  F  M  L  G  M  E  F  *  C  W  S  L  K  L  L  K  F  W  V  G  W  W  K  T  *  K  K  Q  G  S  G  *  L  M  K  *  I  S  H  Q  G  G  K   : E  Q  G  L  V  W  F  L  L  W  Q  L  E  L  L  L  L  H  G  H  E  K  V  L  L  F  Q  S  T  L  I  L  P  Q  D  K  I  C  N  F  R  F  M  N  E  :  E  H  L  A  L  L  L  L  Q  V  K  K  F  I  P  L  D  L  G  Y  H  L  L  R  H  S  S  L  L  F  I  E  E  R  L  N  L  I  S  H  L  L  Q  L  F  L  S  H  S  I  G  T  L  N  L  P  F  H  L  M  Q  L  V  M  Q  R  I  S  I  W  L  T  *  P  L  K  T  L  M  L  Q  L  E  G  N  I  M  T  L  S  F  H  L  C  L  P  W  M  W  R  N  F  C  Q  M  L  E  V  T  L  P  H  L  P  V  A  G  P  E  E  A  F  V  C  L  A  V  V  S  I  M  K  M  *  H  Q  I  H  C  L  L  Q  Q  L  T  L  I  K  L  I  W  L  M  N  W  T  I  H  I  Y  F  L  E  R  R  K  T  L  S  L  T  *  L  V  C  Q  L  S  R  L  V  *  M  A  V  L  P  L  L  Q  E  K  L  S :   A  F  L  L  V  *  R  A  F  S  I  N  R  V  V  N  T  S  F  G  F  M  L  M  M  A  A  *  S  L  R  S  L  *  I  M  L :   L  C  R  K  K  *  A  F  L  L  Q  R  *  M  L  L  L  V  L  Q  M  A  N  E  S  V  T  R  R  R  L  *  N  V  S  R  N  S  *  L  I  L  R :   E  Q  C  L  F  I  *  M  K  N  L  Q  F  Q  L  L  L  K  *  T  R  G  A  L  P  L  M  H  G  C  F  S  K  D  *  S  L  L  L  L  R  D  N  I  I  F  I  T  Q  K  P  S  I  Y  P  L  D  V  S  F  I  L  W  R  I  S  K  P  R  E  Q  G  E  L  Q  S  D  I  A  Q  F  R  K  L  L  L  T  P  S  E  A  M  A  *  M  Q  K  *  F  T  C  D  S  N  N  E  M  T </first_frame>
            <second_frame>  N  S  R  I  I  Y  *  L  P  I  S  Y  P  K  F  S  H  P  E  P  Y  T  *  S  *  A  K  R  R  H  L  *  S  Y  T  S  F  G  L  W  Y  W  S  G  I  G  K  F  R  A  K  I  A  E  G  M  V  R  I  M  C  W  R  T  *  R  I  S  S  R  R  V  F  W  I  G  *  Y  D  Q  G  E  T  L  F  R  A  V  F  V  L  G  Y  D  F  L  W  C  R  N  A  S  K  G  R  S  Q  A  A  F  G  *  S  *  R  A  L  C  S  S   : G  R  *  D  C  E  Y  Q  L  S  S  S  R  *  V  S  E  S  S  C  W  N  K  E  V  S  E  I  V  H  D  *  W  H  S  A  S  V  W  D  G  V  Q  A  Y  K  R  S  R  C  S  S  S  F  W  T  E   : G  C  Y  L  *  C  S  C  *  A  W  N  S  D  V  G  P  *  S  Y  *  S  S  G  W  D  G  G  R  L  R  R  S  K  E  A  A  S  *  *  N  K  *  A  T  K  G  E  K  :  N  K  V  W  C  G  S  S  F  G  N  *  S  Y  C  C  C  M  A  T  R  R  C  Y  C  S  R  A  L  *  Y  F  L  K  T  K  Y  A  I  S  G  S  *  T  R :   N  I  W  H  C  Y  Y  C  K  *  R  N  S  S  R  *  I  W  A  T  I  F  Y  D  I  H  H  S  C  L  *  K  R  G  S  I  *  Y  P  I  Y  S  S  C  F  C  P  I  Q  *  E  R  *  T  Y  L  F  I  *  C  S  *  S  C  R  G  Y  P  Y  G  *  H  D  H  *  R  H  *  C  C  N  *  K  G  T  *  *  H  C  P  F  I  F  V  F  H  G  C  G  G  T  F  V  R  C  *  K  *  P  Y  H  T  C  Q  *  Q  D  Q  R  K  R  L  C  V  *  R  *  F  P  *  *  R  C  N  T  R  Y  I  V  Y  C  S  N  *  R  *  S  N  *  F  G  *  *  I  G  P  S  I  Y  T  F  W  S  E  G  K  P  F  H  L  L  S  *  S  V  S  *  A  G  W  C  E  W  Q  C  F  H  C  Y  R  K  N  *   : V  L  S  Y  W  C  E  G  L  S  V  *  T  E  *  *  I  R  A  S  G  L  C  *  *  W  Q  P  N  L  *  D  P  Y  R  S  C   : S  C  A  G  K  N  R  L  F  S  C  R  G  K  C  C  S  *  F  F  R  W  Q  T  S  Q  *  H  E  G  D  S  E  M  F  P  E  I  L  D  *  F  *   : G  N  N  A  C  S  F  E  *  R  I  S  N  S  S  C  Y  *  N  E  P  G  V  L  C  L  *  C  M  V  A  S  Q  K  T  K  A  F  Y  F  S  A  T  T  S  S  S  S  L  R  N  H  Q  F  I  P  L  M  S  R  S  F  Y  G  E  F  Q  N  H  E  S  K  V  S  Y  R  V  T  L  L  N  S  E  S  C  C  *  R  P  Q  K  Q  W  R  K  C  R  N  S  S  P  V  I  Q  T  M  K  *   </second_frame>
            <third_frame>   I  L  E  S  S  T  N  F  Q  S  V  T  L  N  S  P  I  Q  N  P  T  P  D  H  E  P  N  V  D  I  Y  E  V  I  R  A  S  D  C  G  I  G  R  V  L  E  N  L  G  L  R  L  R  R  E  W  L  E  S  C  V  G  G  L  E  G  S  V  V  G  E  F  S  G  L  D  D  T  T  K  A  K  L  C  F  E  Q  F  L  Y  S  D  M  I  F  C  G  A  G  M  L  P  R  D  V  H  K  L  H  L  V  D  L  K  G  P  F  V  L  Q  :  V  D  E  I  V  N  I  S  C  P  L  R  D  R  Y  Q  K  V  A  A  G  I  K  R  C  L  K  L  S  M  T  D  G  I  Q  R  V  F  G  M  E  Y  R  P  I  K  D  L  D  V  L  A  P  S  G  L  K  :  V  A  I  C  N  V  H  V  R  H  G  I  L  M  L  V  P  E  V  I  E  V  L  G  G  M  V  E  D  L  E  E  A  R  K  R  L  V  N  E  I  N  K  P  P  R  G  K  R :   T  R  S  G  V  V  P  P  L  A  T  R  A  I  A  A  A  W  P  R  E  G  V  T  V  P  E  H  S  D  T  S  S  R  Q  N  M  Q  F  Q  V  H  E  R   : G  T  S  G  I  A  T  T  A  S  E  E  I  H  P  V  R  S  G  L  P  S  S  T  T  F  I  T  P  V  Y  R  R  E  A  Q  S  N  I  P  S  T  P  A  V  S  V  P  F  N  R  N  A  E  P  T  F  S  S  D  A  A  S  H  A  E  D  I  H  M  A  D  M  T  T  E  D  I  D  V  A  I  R  R  E  H  N  D  T  V  L  S  S  L  S  S  M  D  V  E  E  L  L  S  D  V  R  S  D  P  T  T  P  A  S  S  R  T  R  G  S  V  C  V  S  S  G  S  F  H  N  E  D  V  T  P  D  T  L  S  T  A  A  I  D  V  D  Q  I  D  L  V  D  E  L  D  H  P  Y  I  L  S  G  A  K  E  N  P  F  T  Y  L  A  S  L  S  A  K  Q  A  G  V  N  G  S  A  S  T  V  T  G  K  I  K  :  C  F  L  T  G  V  K  G  F  Q  Y  K  Q  S  S  K  Y  E  L  R  V  Y  V  D  D  G  S  L  I  S  E  I  L  I  D  H  A  :  L  V  Q  E  K  I  G  F  S  P  A  E  V  N  A  A  L  S  S  S  D  G  K  R  V  S  D  T  K  E  T  L  K  C  F  Q  K  F  L  I  N  F  E  :  G  T  M  L  V  H  L  N  E  E  S  P  I  P  V  A  T  E  M  N  Q  G  C  S  A  S  D  A  W  L  L  L  K  R  L  K  P  S  T  S  P  R  Q  H  H  L  H  H  S  E  T  I  N  L  S  P  *  C  L  V  H  S  M  E  N  F  K  T  T  R  A  R  *  V  T  E  *  H  C  S  I  Q  K  V  V  A  D  A  L  R  S  N  G  V  N  A  E  I  V  H  L  *  F  K  Q  *  N  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0090D09.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16031" stop="16390"/>
                    <exon start="17673" stop="17843"/>
                    <exon start="17998" stop="18143"/>
                    <exon start="18672" stop="18805"/>
                    <exon start="19297" stop="19877"/>
                    <exon start="20407" stop="20517"/>
                    <exon start="20589" stop="20717"/>
                    <exon start="21071" stop="21241"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1800</number_coding_nucleotides>
                  <number_encoded_amino_acids>600</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILESSTNFQSVTLNSPIQNPTPDHEPNVDIYEVIRASDCGIGRVLENLGLRLRREWLESCVGGLEGSVVGEFSGLDDTTKAKLCFEQFLYSDMIFCGAGMLPRDVHKLHLVDLKGPFVLQVDEIVNISCPLRDRYQKVAAGIKRCLKLSMTDGIQRVFGMEYRPIKDLDVLAPSGLKVAICNVHVRHGILMLVPEVIEVLGGMVEDLEEARKRLVNEINKPPRGKRTRSGVVPPLATRAIAAAWPREGVTVPEHSDTSSRQNMQFQVHERGTSGIATTASEEIHPVRSGLPSSTTFITPVYRREAQSNIPSTPAVSVPFNRNAEPTFSSDAASHAEDIHMADMTTEDIDVAIRREHNDTVLSSLSSMDVEELLSDVRSDPTTPASSRTRGSVCVSSGSFHNEDVTPDTLSTAAIDVDQIDLVDELDHPYILSGAKENPFTYLASLSAKQAGVNGSASTVTGKIKCFLTGVKGFQYKQSSKYELRVYVDDGSLISEILIDHALVQEKIGFSPAEVNAALSSSDGKRVSDTKETLKCFQKFLINFEGTMLVHLNEESPIPVATEMNQGCSASDAWLLLKRLKPSTSPRQHHLHHSETINLSP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="16029" e_stop="16390"/>
            <exon e_start="17673" e_stop="17843"/>
            <exon e_start="17998" e_stop="18143"/>
            <exon e_start="18672" e_stop="18805"/>
            <exon e_start="19297" e_stop="19877"/>
            <exon e_start="20407" e_stop="20517"/>
            <exon e_start="20589" e_stop="20717"/>
            <exon e_start="21071" e_stop="21308"/>
            <exon e_start="21345" e_stop="21685"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.151" e_score="0.997"/>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.615" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.926" e_score="0.950"/>
          <exon-intron don_prob="0.990" acc_prob="0.989" e_score="0.991"/>
          <exon-intron don_prob="0.926" acc_prob="0.999" e_score="0.977"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.962"/>
          <exon-only e_score="0.830"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="16029" e_stop="16390" e_length="362"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.151">
            <gDNA_intron_boundary i_start="16391" i_stop="17672" i_length="1282"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17673" e_stop="17843" e_length="171"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="17844" i_stop="17997" i_length="154"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17998" e_stop="18143" e_length="146"/>
          </exon>
          <intron i_serial="3" don_prob="0.615" acc_prob="0.000">
            <gDNA_intron_boundary i_start="18144" i_stop="18671" i_length="528"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="18672" e_stop="18805" e_length="134"/>
          </exon>
          <intron i_serial="4" don_prob="0.979" acc_prob="1.000">
            <gDNA_intron_boundary i_start="18806" i_stop="19296" i_length="491"/>
          </intron>
          <exon e_serial="5" e_score="0.950">
            <gDNA_exon_boundary e_start="19297" e_stop="19877" e_length="581"/>
          </exon>
          <intron i_serial="5" don_prob="0.969" acc_prob="0.926">
            <gDNA_intron_boundary i_start="19878" i_stop="20406" i_length="529"/>
          </intron>
          <exon e_serial="6" e_score="0.991">
            <gDNA_exon_boundary e_start="20407" e_stop="20517" e_length="111"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="0.989">
            <gDNA_intron_boundary i_start="20518" i_stop="20588" i_length="71"/>
          </intron>
          <exon e_serial="7" e_score="0.977">
            <gDNA_exon_boundary e_start="20589" e_stop="20717" e_length="129"/>
          </exon>
          <intron i_serial="7" don_prob="0.926" acc_prob="0.999">
            <gDNA_intron_boundary i_start="20718" i_stop="21070" i_length="353"/>
          </intron>
          <exon e_serial="8" e_score="0.962">
            <gDNA_exon_boundary e_start="21071" e_stop="21308" e_length="238"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="21309" i_stop="21344" i_length="36"/>
          </intron>
          <exon e_serial="9" e_score="0.830">
            <gDNA_exon_boundary e_start="21345" e_stop="21685" e_length="341"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16029" stop="16390"/>
              <exon start="17673" stop="17792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17722" stop="17843"/>
              <exon start="17998" stop="18143"/>
              <exon start="18672" stop="18805"/>
              <exon start="19297" stop="19585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18109" stop="18143"/>
              <exon start="18672" stop="18805"/>
              <exon start="19297" stop="19762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18109" stop="18143"/>
              <exon start="18672" stop="18805"/>
              <exon start="19297" stop="19737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18109" stop="18143"/>
              <exon start="18672" stop="18805"/>
              <exon start="19297" stop="19534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18672" stop="18805"/>
              <exon start="19297" stop="19636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18710" stop="18805"/>
              <exon start="19297" stop="19740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18785" stop="18805"/>
              <exon start="19297" stop="19877"/>
              <exon start="20407" stop="20517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20427" stop="20517"/>
              <exon start="20589" stop="20717"/>
              <exon start="21071" stop="21308"/>
              <exon start="21345" stop="21685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610734" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATTCTAGAATCATCTACTAACTTCCAATCAGTTACCCTAAATTCTCCCATCCAGAACCCTACACCTGATCATGAGCCAAACGTCGACATTTATGAAGTTATACGAGCTTCGGATTGTGGTATTGGTCGGGTATTGGAAAATTTAGGGCTAAGATTGCGGAGGGAATGGTTAGAATCATGTGTTGGAGGACTTGAAGGATCAGTAGTAGGAGAGTTTTCTGGATTGGATGATACGACCAAGGCGAAACTTTGTTTCGAGCAGTTTTTGTACTCGGATATGATTTTTTGTGGTGCAGGAATGCTTCCAAGGGACGTTCACAAGCTGCATTTGGTTGATCTTAAAGGGCCCTTTGTTCTTCAG : GTAGATGAGATTGTGAATATCAGTTGTCCTCTTCGAGATAGGTATCAGAAAGTAGCTGCTGGAATAAAGAGGTGTCTGAAATTGTCCATGACTGATGGCATTCAGCGAGTGTTTGGGATGGAGTACAGGCCTATAAAAGATCTCGATGTTCTAGCTCCTTCTGGACTGAAG : GTTGCTATCTGTAATGTTCATGTTAGGCATGGAATTCTGATGTTGGTCCCTGAAGTTATTGAAGTTCTGGGTGGGATGGTGGAAGACTTAGAAGAAGCAAGGAAGCGGCTAGTTAATGAAATAAATAAGCCACCAAGGGGGAAAAG : AACAAGGTCTGGTGTGGTTCCTCCTTTGGCAACTAGAGCTATTGCTGCTGCATGGCCACGAGAAGGTGTTACTGTTCCAGAGCACTCTGATACTTCCTCAAGACAAAATATGCAATTTCAGGTTCATGAACGAG : GAACATCTGGCATTGCTACTACTGCAAGTGAAGAAATTCATCCCGTTAGATCTGGGCTACCATCTTCTACGACATTCATCACTCCTGTTTATAGAAGAGAGGCTCAATCTAATATCCCATCTACTCCAGCTGTTTCTGTCCCATTCAATAGGAACGCTGAACCTACCTTTTCATCTGATGCAGCTAGTCATGCAGAGGATATCCATATGGCTGACATGACCACTGAAGACATTGATGTTGCAATTAGAAGGGAACATAATGACACTGTCCTTTCATCTTTGTCTTCCATGGATGTGGAGGAACTTTTGTCAGATGTTAGAAGTGACCCTACCACACCTGCCAGTAGCAGGACCAGAGGAAGCGTTTGTGTGTCTAGCGGTAGTTTCCATAATGAAGATGTAACACCAGATACATTGTCTACTGCAGCAATTGACGTTGATCAAATTGATTTGGTTGATGAATTGGACCATCCATATATACTTTCTGGAGCGAAGGAAAACCCTTTCACTTACTTAGCTAGTCTGTCAGCTAAGCAGGCTGGTGTGAATGGCAGTGCTTCCACTGTTACAGGAAAAATTAAG : TGCTTTCTTACTGGTGTGAAGGGCTTTCAGTATAAACAGAGTAGTAAATACGAGCTTCGGGTTTATGTTGATGATGGCAGCCTAATCTCTGAGATCCTTATAGATCATGCT : CTTGTGCAGGAAAAAATAGGCTTTTCTCCTGCAGAGGTAAATGCTGCTCTTAGTTCTTCAGATGGCAAACGAGTCAGTGACACGAAGGAGACTCTGAAATGTTTCCAGAAATTCTTGATTAATTTTGAG : GGAACAATGCTTGTTCATTTGAATGAAGAATCTCCAATTCCAGTTGCTACTGAAATGAACCAGGGGTGCTCTGCCTCTGATGCATGGTTGCTTCTCAAAAGACTAAAGCCTTCTACTTCTCCGCGACAACATCATCTTCATCACTCAGAAACCATCAATTTATCCCCTTGATGTCTCGTTCATTCTATGGAGAATTTCAAAACCACGAGAGCAAGGTGAGTTACAGAGTGACATTGCT : ATGGCGTAAATGCAGAAATAGTTCACCTGTGATTCAAACAATGAAATGACTTCTCAAATTGCGGAGCCCAGGGTGTTTGATTGGGGTTCATCCTAACCTTCTTCCTCGGAAAATTACAATGTATATGTGAGGACATATAAGGTCAATTAGCTTGATTCATTTTATTATCTTCTATTTCTAGATTATTTAAGAATTTGAATTACTATATATGAACTAGAAATTCTGTTCGAACATAGATTTTGAAGTTTAATTGATATATTAGTTCTTTTTTCCCCTTTCCTTTTCTTGATAATTACTTTCAATTTGATCGTGTAGCTATTCTTCTTTTATCTTAAACAATG</gDNA_template>
            <first_frame> K  F  *  N  H  L  L  T  S  N  Q  L  P  *  I  L  P  S  R  T  L  H  L  I  M  S  Q  T  S  T  F  M  K  L  Y  E  L  R  I  V  V  L  V  G  Y  W  K  I  *  G  *  D  C  G  G  N  G  *  N  H  V  L  E  D  L  K  D  Q  *  *  E  S  F  L  D  W  M  I  R  P  R  R  N  F  V  S  S  S  F  C  T  R  I  *  F  F  V  V  Q  E  C  F  Q  G  T  F  T  S  C  I  W  L  I  L  K  G  P  L  F  F  R :   *  M  R  L  *  I  S  V  V  L  F  E  I  G  I  R  K  *  L  L  E  *  R  G  V  *  N  C  P  *  L  M  A  F  S  E  C  L  G  W  S  T  G  L  *  K  I  S  M  F  *  L  L  L  D  *  R :   L  L  S  V  M  F  M  L  G  M  E  F  *  C  W  S  L  K  L  L  K  F  W  V  G  W  W  K  T  *  K  K  Q  G  S  G  *  L  M  K  *  I  S  H  Q  G  G  K   : E  Q  G  L  V  W  F  L  L  W  Q  L  E  L  L  L  L  H  G  H  E  K  V  L  L  F  Q  S  T  L  I  L  P  Q  D  K  I  C  N  F  R  F  M  N  E  :  E  H  L  A  L  L  L  L  Q  V  K  K  F  I  P  L  D  L  G  Y  H  L  L  R  H  S  S  L  L  F  I  E  E  R  L  N  L  I  S  H  L  L  Q  L  F  L  S  H  S  I  G  T  L  N  L  P  F  H  L  M  Q  L  V  M  Q  R  I  S  I  W  L  T  *  P  L  K  T  L  M  L  Q  L  E  G  N  I  M  T  L  S  F  H  L  C  L  P  W  M  W  R  N  F  C  Q  M  L  E  V  T  L  P  H  L  P  V  A  G  P  E  E  A  F  V  C  L  A  V  V  S  I  M  K  M  *  H  Q  I  H  C  L  L  Q  Q  L  T  L  I  K  L  I  W  L  M  N  W  T  I  H  I  Y  F  L  E  R  R  K  T  L  S  L  T  *  L  V  C  Q  L  S  R  L  V  *  M  A  V  L  P  L  L  Q  E  K  L  S :   A  F  L  L  V  *  R  A  F  S  I  N  R  V  V  N  T  S  F  G  F  M  L  M  M  A  A  *  S  L  R  S  L  *  I  M  L :   L  C  R  K  K  *  A  F  L  L  Q  R  *  M  L  L  L  V  L  Q  M  A  N  E  S  V  T  R  R  R  L  *  N  V  S  R  N  S  *  L  I  L  R :   E  Q  C  L  F  I  *  M  K  N  L  Q  F  Q  L  L  L  K  *  T  R  G  A  L  P  L  M  H  G  C  F  S  K  D  *  S  L  L  L  L  R  D  N  I  I  F  I  T  Q  K  P  S  I  Y  P  L  D  V  S  F  I  L  W  R  I  S  K  P  R  E  Q  G  E  L  Q  S  D  I  A  :  M  A  *  M  Q  K  *  F  T  C  D  S  N  N  E  M  T  S  Q  I  A  E  P  R  V  F  D  W  G  S  S  *  P  S  S  S  E  N  Y  N  V  Y  V  R  T  Y  K  V  N  *  L  D  S  F  Y  Y  L  L  F  L  D  Y  L  R  I  *  I  T  I  Y  E  L  E  I  L  F  E  H  R  F  *  S  L  I  D  I  L  V  L  F  S  P  F  L  F  L  I  I  T  F  N  L  I  V  *  L  F  F  F  Y  L  K  Q   </first_frame>
            <second_frame>  N  S  R  I  I  Y  *  L  P  I  S  Y  P  K  F  S  H  P  E  P  Y  T  *  S  *  A  K  R  R  H  L  *  S  Y  T  S  F  G  L  W  Y  W  S  G  I  G  K  F  R  A  K  I  A  E  G  M  V  R  I  M  C  W  R  T  *  R  I  S  S  R  R  V  F  W  I  G  *  Y  D  Q  G  E  T  L  F  R  A  V  F  V  L  G  Y  D  F  L  W  C  R  N  A  S  K  G  R  S  Q  A  A  F  G  *  S  *  R  A  L  C  S  S   : G  R  *  D  C  E  Y  Q  L  S  S  S  R  *  V  S  E  S  S  C  W  N  K  E  V  S  E  I  V  H  D  *  W  H  S  A  S  V  W  D  G  V  Q  A  Y  K  R  S  R  C  S  S  S  F  W  T  E   : G  C  Y  L  *  C  S  C  *  A  W  N  S  D  V  G  P  *  S  Y  *  S  S  G  W  D  G  G  R  L  R  R  S  K  E  A  A  S  *  *  N  K  *  A  T  K  G  E  K  :  N  K  V  W  C  G  S  S  F  G  N  *  S  Y  C  C  C  M  A  T  R  R  C  Y  C  S  R  A  L  *  Y  F  L  K  T  K  Y  A  I  S  G  S  *  T  R :   N  I  W  H  C  Y  Y  C  K  *  R  N  S  S  R  *  I  W  A  T  I  F  Y  D  I  H  H  S  C  L  *  K  R  G  S  I  *  Y  P  I  Y  S  S  C  F  C  P  I  Q  *  E  R  *  T  Y  L  F  I  *  C  S  *  S  C  R  G  Y  P  Y  G  *  H  D  H  *  R  H  *  C  C  N  *  K  G  T  *  *  H  C  P  F  I  F  V  F  H  G  C  G  G  T  F  V  R  C  *  K  *  P  Y  H  T  C  Q  *  Q  D  Q  R  K  R  L  C  V  *  R  *  F  P  *  *  R  C  N  T  R  Y  I  V  Y  C  S  N  *  R  *  S  N  *  F  G  *  *  I  G  P  S  I  Y  T  F  W  S  E  G  K  P  F  H  L  L  S  *  S  V  S  *  A  G  W  C  E  W  Q  C  F  H  C  Y  R  K  N  *   : V  L  S  Y  W  C  E  G  L  S  V  *  T  E  *  *  I  R  A  S  G  L  C  *  *  W  Q  P  N  L  *  D  P  Y  R  S  C   : S  C  A  G  K  N  R  L  F  S  C  R  G  K  C  C  S  *  F  F  R  W  Q  T  S  Q  *  H  E  G  D  S  E  M  F  P  E  I  L  D  *  F  *   : G  N  N  A  C  S  F  E  *  R  I  S  N  S  S  C  Y  *  N  E  P  G  V  L  C  L  *  C  M  V  A  S  Q  K  T  K  A  F  Y  F  S  A  T  T  S  S  S  S  L  R  N  H  Q  F  I  P  L  M  S  R  S  F  Y  G  E  F  Q  N  H  E  S  K  V  S  Y  R  V  T  L  L :   W  R  K  C  R  N  S  S  P  V  I  Q  T  M  K  *  L  L  K  L  R  S  P  G  C  L  I  G  V  H  P  N  L  L  P  R  K  I  T  M  Y  M  *  G  H  I  R  S  I  S  L  I  H  F  I  I  F  Y  F  *  I  I  *  E  F  E  L  L  Y  M  N  *  K  F  C  S  N  I  D  F  E  V  *  L  I  Y  *  F  F  F  P  L  S  F  S  *  *  L  L  S  I  *  S  C  S  Y  S  S  F  I  L  N  N  </second_frame>
            <third_frame>   I  L  E  S  S  T  N  F  Q  S  V  T  L  N  S  P  I  Q  N  P  T  P  D  H  E  P  N  V  D  I  Y  E  V  I  R  A  S  D  C  G  I  G  R  V  L  E  N  L  G  L  R  L  R  R  E  W  L  E  S  C  V  G  G  L  E  G  S  V  V  G  E  F  S  G  L  D  D  T  T  K  A  K  L  C  F  E  Q  F  L  Y  S  D  M  I  F  C  G  A  G  M  L  P  R  D  V  H  K  L  H  L  V  D  L  K  G  P  F  V  L  Q  :  V  D  E  I  V  N  I  S  C  P  L  R  D  R  Y  Q  K  V  A  A  G  I  K  R  C  L  K  L  S  M  T  D  G  I  Q  R  V  F  G  M  E  Y  R  P  I  K  D  L  D  V  L  A  P  S  G  L  K  :  V  A  I  C  N  V  H  V  R  H  G  I  L  M  L  V  P  E  V  I  E  V  L  G  G  M  V  E  D  L  E  E  A  R  K  R  L  V  N  E  I  N  K  P  P  R  G  K  R :   T  R  S  G  V  V  P  P  L  A  T  R  A  I  A  A  A  W  P  R  E  G  V  T  V  P  E  H  S  D  T  S  S  R  Q  N  M  Q  F  Q  V  H  E  R   : G  T  S  G  I  A  T  T  A  S  E  E  I  H  P  V  R  S  G  L  P  S  S  T  T  F  I  T  P  V  Y  R  R  E  A  Q  S  N  I  P  S  T  P  A  V  S  V  P  F  N  R  N  A  E  P  T  F  S  S  D  A  A  S  H  A  E  D  I  H  M  A  D  M  T  T  E  D  I  D  V  A  I  R  R  E  H  N  D  T  V  L  S  S  L  S  S  M  D  V  E  E  L  L  S  D  V  R  S  D  P  T  T  P  A  S  S  R  T  R  G  S  V  C  V  S  S  G  S  F  H  N  E  D  V  T  P  D  T  L  S  T  A  A  I  D  V  D  Q  I  D  L  V  D  E  L  D  H  P  Y  I  L  S  G  A  K  E  N  P  F  T  Y  L  A  S  L  S  A  K  Q  A  G  V  N  G  S  A  S  T  V  T  G  K  I  K  :  C  F  L  T  G  V  K  G  F  Q  Y  K  Q  S  S  K  Y  E  L  R  V  Y  V  D  D  G  S  L  I  S  E  I  L  I  D  H  A  :  L  V  Q  E  K  I  G  F  S  P  A  E  V  N  A  A  L  S  S  S  D  G  K  R  V  S  D  T  K  E  T  L  K  C  F  Q  K  F  L  I  N  F  E  :  G  T  M  L  V  H  L  N  E  E  S  P  I  P  V  A  T  E  M  N  Q  G  C  S  A  S  D  A  W  L  L  L  K  R  L  K  P  S  T  S  P  R  Q  H  H  L  H  H  S  E  T  I  N  L  S  P  *  C  L  V  H  S  M  E  N  F  K  T  T  R  A  R  *  V  T  E  *  H  C   : Y  G  V  N  A  E  I  V  H  L  *  F  K  Q  *  N  D  F  S  N  C  G  A  Q  G  V  *  L  G  F  I  L  T  F  F  L  G  K  L  Q  C  I  C  E  D  I  *  G  Q  L  A  *  F  I  L  L  S  S  I  S  R  L  F  K  N  L  N  Y  Y  I  *  T  R  N  S  V  R  T  *  I  L  K  F  N  *  Y  I  S  S  F  F  P  F  P  F  L  D  N  Y  F  Q  F  D  R  V  A  I  L  L  L  S  *  T  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0090D09.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16031" stop="16390"/>
                    <exon start="17673" stop="17843"/>
                    <exon start="17998" stop="18143"/>
                    <exon start="18672" stop="18805"/>
                    <exon start="19297" stop="19877"/>
                    <exon start="20407" stop="20517"/>
                    <exon start="20589" stop="20717"/>
                    <exon start="21071" stop="21241"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1800</number_coding_nucleotides>
                  <number_encoded_amino_acids>600</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILESSTNFQSVTLNSPIQNPTPDHEPNVDIYEVIRASDCGIGRVLENLGLRLRREWLESCVGGLEGSVVGEFSGLDDTTKAKLCFEQFLYSDMIFCGAGMLPRDVHKLHLVDLKGPFVLQVDEIVNISCPLRDRYQKVAAGIKRCLKLSMTDGIQRVFGMEYRPIKDLDVLAPSGLKVAICNVHVRHGILMLVPEVIEVLGGMVEDLEEARKRLVNEINKPPRGKRTRSGVVPPLATRAIAAAWPREGVTVPEHSDTSSRQNMQFQVHERGTSGIATTASEEIHPVRSGLPSSTTFITPVYRREAQSNIPSTPAVSVPFNRNAEPTFSSDAASHAEDIHMADMTTEDIDVAIRREHNDTVLSSLSSMDVEELLSDVRSDPTTPASSRTRGSVCVSSGSFHNEDVTPDTLSTAAIDVDQIDLVDELDHPYILSGAKENPFTYLASLSAKQAGVNGSASTVTGKIKCFLTGVKGFQYKQSSKYELRVYVDDGSLISEILIDHALVQEKIGFSPAEVNAALSSSDGKRVSDTKETLKCFQKFLINFEGTMLVHLNEESPIPVATEMNQGCSASDAWLLLKRLKPSTSPRQHHLHHSETINLSP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="18437" e_stop="18805"/>
            <exon e_start="19297" e_stop="19877"/>
            <exon e_start="20407" e_stop="20517"/>
            <exon e_start="20589" e_stop="20717"/>
            <exon e_start="21071" e_stop="21395"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="1.000" e_score="0.962"/>
          <exon-intron don_prob="0.969" acc_prob="0.926" e_score="0.950"/>
          <exon-intron don_prob="0.990" acc_prob="0.989" e_score="0.991"/>
          <exon-intron don_prob="0.926" acc_prob="0.999" e_score="0.977"/>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="18437" e_stop="18805" e_length="369"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="1.000">
            <gDNA_intron_boundary i_start="18806" i_stop="19296" i_length="491"/>
          </intron>
          <exon e_serial="2" e_score="0.950">
            <gDNA_exon_boundary e_start="19297" e_stop="19877" e_length="581"/>
          </exon>
          <intron i_serial="2" don_prob="0.969" acc_prob="0.926">
            <gDNA_intron_boundary i_start="19878" i_stop="20406" i_length="529"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="20407" e_stop="20517" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.989">
            <gDNA_intron_boundary i_start="20518" i_stop="20588" i_length="71"/>
          </intron>
          <exon e_serial="4" e_score="0.977">
            <gDNA_exon_boundary e_start="20589" e_stop="20717" e_length="129"/>
          </exon>
          <intron i_serial="4" don_prob="0.926" acc_prob="0.999">
            <gDNA_intron_boundary i_start="20718" i_stop="21070" i_length="353"/>
          </intron>
          <exon e_serial="5" e_score="0.923">
            <gDNA_exon_boundary e_start="21071" e_stop="21395" e_length="325"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18437" stop="18805"/>
              <exon start="19297" stop="19421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18668" stop="18805"/>
              <exon start="19297" stop="19742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18672" stop="18805"/>
              <exon start="19297" stop="19636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18710" stop="18805"/>
              <exon start="19297" stop="19740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18785" stop="18805"/>
              <exon start="19297" stop="19877"/>
              <exon start="20407" stop="20517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19721" stop="19877"/>
              <exon start="20407" stop="20517"/>
              <exon start="20589" stop="20717"/>
              <exon start="21071" stop="21395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735902" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTTAAAGTTAAGAGCTGTTTCTCTGAATCTTAGCAAAGTGGTACTTTGTACTCCTCCTTCCTTGTCCATTTTATTTCTTGACCTTCTAGTGAAGACTTAATATCTGTTGCTCAGTTATAGGCTTTGGTTTACAAATGAGCGAATAAGGCGTATTGTCATGATTTATTATTGTTATTCTAGAAACAACCTCATCACTTTTGGTTATTTAGTTACTTCGTCTATGCCCAATGCCAGAACAAGGTCTGGTGTGGTTCCTCCTTTGGCAACTAGAGCTATTGCTGCTGCATGGCCACGAGAAGGTGTTACTGTTCCAGAGCACTCTGATACTTCCTCAAGACAAAATATGCAATTTCAGGTTCATGAACGAG : GAACATCTGGCATTGCTACTACTGCAAGTGAAGAAATTCATCCCGTTAGATCTGGGCTACCATCTTCTACGACATTCATCACTCCTGTTTATAGAAGAGAGGCTCAATCTAATATCCCATCTACTCCAGCTGTTTCTGTCCCATTCAATAGGAACGCTGAACCTACCTTTTCATCTGATGCAGCTAGTCATGCAGAGGATATCCATATGGCTGACATGACCACTGAAGACATTGATGTTGCAATTAGAAGGGAACATAATGACACTGTCCTTTCATCTTTGTCTTCCATGGATGTGGAGGAACTTTTGTCAGATGTTAGAAGTGACCCTACCACACCTGCCAGTAGCAGGACCAGAGGAAGCGTTTGTGTGTCTAGCGGTAGTTTCCATAATGAAGATGTAACACCAGATACATTGTCTACTGCAGCAATTGACGTTGATCAAATTGATTTGGTTGATGAATTGGACCATCCATATATACTTTCTGGAGCGAAGGAAAACCCTTTCACTTACTTAGCTAGTCTGTCAGCTAAGCAGGCTGGTGTGAATGGCAGTGCTTCCACTGTTACAGGAAAAATTAAG : TGCTTTCTTACTGGTGTGAAGGGCTTTCAGTATAAACAGAGTAGTAAATACGAGCTTCGGGTTTATGTTGATGATGGCAGCCTAATCTCTGAGATCCTTATAGATCATGCT : CTTGTGCAGGAAAAAATAGGCTTTTCTCCTGCAGAGGTAAATGCTGCTCTTAGTTCTTCAGATGGCAAACGAGTCAGTGACACGAAGGAGACTCTGAAATGTTTCCAGAAATTCTTGATTAATTTTGAG : GGAACAATGCTTGTTCATTTGAATGAAGAATCTCCAATTCCAGTTGCTACTGAAATGAACCAGGGGTGCTCTGCCTCTGATGCATGGTTGCTTCTCAAAAGACTAAAGCCTTCTACTTCTCCGCGACAACATCATCTTCATCACTCAGAAACCATCAATTTATCCCCTTGATGTCTCGTTCATTCTATGGAGAATTTCAAAACCACGAGAGCAAGGTGAGTTACAGAGTGACATTGCTCAATTCAGAAAGTTGTTGCTGACGCCCTCAGAAGCAATGGCGTAAATGCAGAAATAGTTCACCTGTGATTCAAACAATGAAATGACT</gDNA_template>
            <first_frame> G  *  S  *  E  L  F  L  *  I  L  A  K  W  Y  F  V  L  L  L  P  C  P  F  Y  F  L  T  F  *  *  R  L  N  I  C  C  S  V  I  G  F  G  L  Q  M  S  E  *  G  V  L  S  *  F  I  I  V  I  L  E  T  T  S  S  L  L  V  I  *  L  L  R  L  C  P  M  P  E  Q  G  L  V  W  F  L  L  W  Q  L  E  L  L  L  L  H  G  H  E  K  V  L  L  F  Q  S  T  L  I  L  P  Q  D  K  I  C  N  F  R  F  M  N  E  :  E  H  L  A  L  L  L  L  Q  V  K  K  F  I  P  L  D  L  G  Y  H  L  L  R  H  S  S  L  L  F  I  E  E  R  L  N  L  I  S  H  L  L  Q  L  F  L  S  H  S  I  G  T  L  N  L  P  F  H  L  M  Q  L  V  M  Q  R  I  S  I  W  L  T  *  P  L  K  T  L  M  L  Q  L  E  G  N  I  M  T  L  S  F  H  L  C  L  P  W  M  W  R  N  F  C  Q  M  L  E  V  T  L  P  H  L  P  V  A  G  P  E  E  A  F  V  C  L  A  V  V  S  I  M  K  M  *  H  Q  I  H  C  L  L  Q  Q  L  T  L  I  K  L  I  W  L  M  N  W  T  I  H  I  Y  F  L  E  R  R  K  T  L  S  L  T  *  L  V  C  Q  L  S  R  L  V  *  M  A  V  L  P  L  L  Q  E  K  L  S :   A  F  L  L  V  *  R  A  F  S  I  N  R  V  V  N  T  S  F  G  F  M  L  M  M  A  A  *  S  L  R  S  L  *  I  M  L :   L  C  R  K  K  *  A  F  L  L  Q  R  *  M  L  L  L  V  L  Q  M  A  N  E  S  V  T  R  R  R  L  *  N  V  S  R  N  S  *  L  I  L  R :   E  Q  C  L  F  I  *  M  K  N  L  Q  F  Q  L  L  L  K  *  T  R  G  A  L  P  L  M  H  G  C  F  S  K  D  *  S  L  L  L  L  R  D  N  I  I  F  I  T  Q  K  P  S  I  Y  P  L  D  V  S  F  I  L  W  R  I  S  K  P  R  E  Q  G  E  L  Q  S  D  I  A  Q  F  R  K  L  L  L  T  P  S  E  A  M  A  *  M  Q  K  *  F  T  C  D  S  N  N  E  M  T </first_frame>
            <second_frame>  V  K  V  K  S  C  F  S  E  S  *  Q  S  G  T  L  Y  S  S  F  L  V  H  F  I  S  *  P  S  S  E  D  L  I  S  V  A  Q  L  *  A  L  V  Y  K  *  A  N  K  A  Y  C  H  D  L  L  L  L  F  *  K  Q  P  H  H  F  W  L  F  S  Y  F  V  Y  A  Q  C  Q  N  K  V  W  C  G  S  S  F  G  N  *  S  Y  C  C  C  M  A  T  R  R  C  Y  C  S  R  A  L  *  Y  F  L  K  T  K  Y  A  I  S  G  S  *  T  R :   N  I  W  H  C  Y  Y  C  K  *  R  N  S  S  R  *  I  W  A  T  I  F  Y  D  I  H  H  S  C  L  *  K  R  G  S  I  *  Y  P  I  Y  S  S  C  F  C  P  I  Q  *  E  R  *  T  Y  L  F  I  *  C  S  *  S  C  R  G  Y  P  Y  G  *  H  D  H  *  R  H  *  C  C  N  *  K  G  T  *  *  H  C  P  F  I  F  V  F  H  G  C  G  G  T  F  V  R  C  *  K  *  P  Y  H  T  C  Q  *  Q  D  Q  R  K  R  L  C  V  *  R  *  F  P  *  *  R  C  N  T  R  Y  I  V  Y  C  S  N  *  R  *  S  N  *  F  G  *  *  I  G  P  S  I  Y  T  F  W  S  E  G  K  P  F  H  L  L  S  *  S  V  S  *  A  G  W  C  E  W  Q  C  F  H  C  Y  R  K  N  *   : V  L  S  Y  W  C  E  G  L  S  V  *  T  E  *  *  I  R  A  S  G  L  C  *  *  W  Q  P  N  L  *  D  P  Y  R  S  C   : S  C  A  G  K  N  R  L  F  S  C  R  G  K  C  C  S  *  F  F  R  W  Q  T  S  Q  *  H  E  G  D  S  E  M  F  P  E  I  L  D  *  F  *   : G  N  N  A  C  S  F  E  *  R  I  S  N  S  S  C  Y  *  N  E  P  G  V  L  C  L  *  C  M  V  A  S  Q  K  T  K  A  F  Y  F  S  A  T  T  S  S  S  S  L  R  N  H  Q  F  I  P  L  M  S  R  S  F  Y  G  E  F  Q  N  H  E  S  K  V  S  Y  R  V  T  L  L  N  S  E  S  C  C  *  R  P  Q  K  Q  W  R  K  C  R  N  S  S  P  V  I  Q  T  M  K  *   </second_frame>
            <third_frame>   L  K  L  R  A  V  S  L  N  L  S  K  V  V  L  C  T  P  P  S  L  S  I  L  F  L  D  L  L  V  K  T  *  Y  L  L  L  S  Y  R  L  W  F  T  N  E  R  I  R  R  I  V  M  I  Y  Y  C  Y  S  R  N  N  L  I  T  F  G  Y  L  V  T  S  S  M  P  N  A  R  T  R  S  G  V  V  P  P  L  A  T  R  A  I  A  A  A  W  P  R  E  G  V  T  V  P  E  H  S  D  T  S  S  R  Q  N  M  Q  F  Q  V  H  E  R   : G  T  S  G  I  A  T  T  A  S  E  E  I  H  P  V  R  S  G  L  P  S  S  T  T  F  I  T  P  V  Y  R  R  E  A  Q  S  N  I  P  S  T  P  A  V  S  V  P  F  N  R  N  A  E  P  T  F  S  S  D  A  A  S  H  A  E  D  I  H  M  A  D  M  T  T  E  D  I  D  V  A  I  R  R  E  H  N  D  T  V  L  S  S  L  S  S  M  D  V  E  E  L  L  S  D  V  R  S  D  P  T  T  P  A  S  S  R  T  R  G  S  V  C  V  S  S  G  S  F  H  N  E  D  V  T  P  D  T  L  S  T  A  A  I  D  V  D  Q  I  D  L  V  D  E  L  D  H  P  Y  I  L  S  G  A  K  E  N  P  F  T  Y  L  A  S  L  S  A  K  Q  A  G  V  N  G  S  A  S  T  V  T  G  K  I  K  :  C  F  L  T  G  V  K  G  F  Q  Y  K  Q  S  S  K  Y  E  L  R  V  Y  V  D  D  G  S  L  I  S  E  I  L  I  D  H  A  :  L  V  Q  E  K  I  G  F  S  P  A  E  V  N  A  A  L  S  S  S  D  G  K  R  V  S  D  T  K  E  T  L  K  C  F  Q  K  F  L  I  N  F  E  :  G  T  M  L  V  H  L  N  E  E  S  P  I  P  V  A  T  E  M  N  Q  G  C  S  A  S  D  A  W  L  L  L  K  R  L  K  P  S  T  S  P  R  Q  H  H  L  H  H  S  E  T  I  N  L  S  P  *  C  L  V  H  S  M  E  N  F  K  T  T  R  A  R  *  V  T  E  *  H  C  S  I  Q  K  V  V  A  D  A  L  R  S  N  G  V  N  A  E  I  V  H  L  *  F  K  Q  *  N  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0090D09.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18538" stop="18805"/>
                    <exon start="19297" stop="19877"/>
                    <exon start="20407" stop="20517"/>
                    <exon start="20589" stop="20717"/>
                    <exon start="21071" stop="21241"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1257</number_coding_nucleotides>
                  <number_encoded_amino_acids>419</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YLLLSYRLWFTNERIRRIVMIYYCYSRNNLITFGYLVTSSMPNARTRSGVVPPLATRAIAAAWPREGVTVPEHSDTSSRQNMQFQVHERGTSGIATTASEEIHPVRSGLPSSTTFITPVYRREAQSNIPSTPAVSVPFNRNAEPTFSSDAASHAEDIHMADMTTEDIDVAIRREHNDTVLSSLSSMDVEELLSDVRSDPTTPASSRTRGSVCVSSGSFHNEDVTPDTLSTAAIDVDQIDLVDELDHPYILSGAKENPFTYLASLSAKQAGVNGSASTVTGKIKCFLTGVKGFQYKQSSKYELRVYVDDGSLISEILIDHALVQEKIGFSPAEVNAALSSSDGKRVSDTKETLKCFQKFLINFEGTMLVHLNEESPIPVATEMNQGCSASDAWLLLKRLKPSTSPRQHHLHHSETINLSP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="25228" PGL_stop="25696"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25228" e_stop="25696"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="25228" e_stop="25696" e_length="469"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25228" stop="25696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25331" stop="25696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219677" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTTCATTGGAGAATATAGGTAATCAAGTAGATGATGATATTATGAGATTTCTTGATAATTTTCCACTTGGTGTACCTGTTCCTGACTGGTGTGATGATCAACAAAATACATCAAATGGTCAATCTTTTGAATGTGACCAAATTCAATTGTCCTCAAAATCAAGTTCATGAAGATTCGGAATTGCAGATTCAGAATTTGAAGTTTATCGATTTCTCATACAACAATTTTAAGTTGAAATATAATAATCAGTCAAATAGTTATAGATGTTTAGAAAAAATTTCTTAATATATAGACGAGATCTCTGTACAGGGTACACGTGAACCCGTTAGTTACAAGCTAGATCTGTCTCTTTTAAGGATGATCAAGAATAGGAAATCATGCCCTTGTTTTAGTTAATTAAAAGTAGTCAAGACATTTATTTATATTCTTATTCATAAATTTACCATTAAGTAAATAGCAAAGATTGCA</gDNA_template>
            <first_frame> A  S  L  E  N  I  G  N  Q  V  D  D  D  I  M  R  F  L  D  N  F  P  L  G  V  P  V  P  D  W  C  D  D  Q  Q  N  T  S  N  G  Q  S  F  E  C  D  Q  I  Q  L  S  S  K  S  S  S  *  R  F  G  I  A  D  S  E  F  E  V  Y  R  F  L  I  Q  Q  F  *  V  E  I  *  *  S  V  K  *  L  *  M  F  R  K  N  F  L  I  Y  R  R  D  L  C  T  G  Y  T  *  T  R  *  L  Q  A  R  S  V  S  F  K  D  D  Q  E  *  E  I  M  P  L  F  *  L  I  K  S  S  Q  D  I  Y  L  Y  S  Y  S  *  I  Y  H  *  V  N  S  K  D  C  </first_frame>
            <second_frame>  L  H  W  R  I  *  V  I  K  *  M  M  I  L  *  D  F  L  I  I  F  H  L  V  Y  L  F  L  T  G  V  M  I  N  K  I  H  Q  M  V  N  L  L  N  V  T  K  F  N  C  P  Q  N  Q  V  H  E  D  S  E  L  Q  I  Q  N  L  K  F  I  D  F  S  Y  N  N  F  K  L  K  Y  N  N  Q  S  N  S  Y  R  C  L  E  K  I  S  *  Y  I  D  E  I  S  V  Q  G  T  R  E  P  V  S  Y  K  L  D  L  S  L  L  R  M  I  K  N  R  K  S  C  P  C  F  S  *  L  K  V  V  K  T  F  I  Y  I  L  I  H  K  F  T  I  K  *  I  A  K  I  A </second_frame>
            <third_frame>   F  I  G  E  Y  R  *  S  S  R  *  *  Y  Y  E  I  S  *  *  F  S  T  W  C  T  C  S  *  L  V  *  *  S  T  K  Y  I  K  W  S  I  F  *  M  *  P  N  S  I  V  L  K  I  K  F  M  K  I  R  N  C  R  F  R  I  *  S  L  S  I  S  H  T  T  I  L  S  *  N  I  I  I  S  Q  I  V  I  D  V  *  K  K  F  L  N  I  *  T  R  S  L  Y  R  V  H  V  N  P  L  V  T  S  *  I  C  L  F  *  G  *  S  R  I  G  N  H  A  L  V  L  V  N  *  K  *  S  R  H  L  F  I  F  L  F  I  N  L  P  L  S  K  *  Q  R  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0090D09.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25274" stop="25513"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DFLIIFHLVYLFLTGVMINKIHQMVNLLNVTKFNCPQNQVHEDSELQIQNLKFIDFSYNNFKLKYNNQSNSYRCLEKIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="37690" PGL_stop="33879"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37690" e_stop="37382"/>
            <exon e_start="36832" e_stop="36733"/>
            <exon e_start="36648" e_stop="36393"/>
            <exon e_start="36300" e_stop="36237"/>
            <exon e_start="35754" e_stop="35682"/>
            <exon e_start="35563" e_stop="35443"/>
            <exon e_start="35307" e_stop="35220"/>
            <exon e_start="35143" e_stop="35027"/>
            <exon e_start="34908" e_stop="34711"/>
            <exon e_start="34454" e_stop="33879"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.974" e_score="0.939"/>
          <exon-intron don_prob="0.953" acc_prob="0.741" e_score="0.910"/>
          <exon-intron don_prob="0.790" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.154" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.335" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.963" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.939">
            <gDNA_exon_boundary e_start="37690" e_stop="37382" e_length="309"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.974">
            <gDNA_intron_boundary i_start="37381" i_stop="36833" i_length="549"/>
          </intron>
          <exon e_serial="2" e_score="0.910">
            <gDNA_exon_boundary e_start="36832" e_stop="36733" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.953" acc_prob="0.741">
            <gDNA_intron_boundary i_start="36732" i_stop="36649" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="36648" e_stop="36393" e_length="256"/>
          </exon>
          <intron i_serial="3" don_prob="0.790" acc_prob="0.987">
            <gDNA_intron_boundary i_start="36392" i_stop="36301" i_length="92"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="36300" e_stop="36237" e_length="64"/>
          </exon>
          <intron i_serial="4" don_prob="0.962" acc_prob="0.993">
            <gDNA_intron_boundary i_start="36236" i_stop="35755" i_length="482"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="35754" e_stop="35682" e_length="73"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.154">
            <gDNA_intron_boundary i_start="35681" i_stop="35564" i_length="118"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="35563" e_stop="35443" e_length="121"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.989">
            <gDNA_intron_boundary i_start="35442" i_stop="35308" i_length="135"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="35307" e_stop="35220" e_length="88"/>
          </exon>
          <intron i_serial="7" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="35219" i_stop="35144" i_length="76"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="35143" e_stop="35027" e_length="117"/>
          </exon>
          <intron i_serial="8" don_prob="0.335" acc_prob="0.000">
            <gDNA_intron_boundary i_start="35026" i_stop="34909" i_length="118"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="34908" e_stop="34711" e_length="198"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.963">
            <gDNA_intron_boundary i_start="34710" i_stop="34455" i_length="256"/>
          </intron>
          <exon e_serial="10" e_score="0.984">
            <gDNA_exon_boundary e_start="34454" e_stop="33879" e_length="576"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37690" stop="37382"/>
              <exon start="36832" stop="36733"/>
              <exon start="36648" stop="36396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37690" stop="37495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36627" stop="36393"/>
              <exon start="36300" stop="36237"/>
              <exon start="35754" stop="35682"/>
              <exon start="35563" stop="35443"/>
              <exon start="35307" stop="35279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36627" stop="36393"/>
              <exon start="36300" stop="36237"/>
              <exon start="35754" stop="35682"/>
              <exon start="35563" stop="35443"/>
              <exon start="35307" stop="35291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35752" stop="35682"/>
              <exon start="35563" stop="35443"/>
              <exon start="35307" stop="35220"/>
              <exon start="35143" stop="35027"/>
              <exon start="34908" stop="34711"/>
              <exon start="34454" stop="34397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35751" stop="35682"/>
              <exon start="35563" stop="35443"/>
              <exon start="35307" stop="35220"/>
              <exon start="35143" stop="35027"/>
              <exon start="34908" stop="34727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34447" stop="33879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34444" stop="33879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395724" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTAATTTTCCTCAAACTTTGTTCCTAGGATTCACTTTTTCTGTAAAAAAGATTATAGCTTTATTGGTTATTGGGTGTCTGAGATTTTGGTTTTCCGTGTCTGGTACTCATATTGAAGCTCTGACTGTAATCTTGATTCGCGGGCTTTCTAGAAGAGTTCAAAATCGAGACGTCTGGTTAAGGGTGTGTTTGATATGTATTTCAAGAACAGAGGAGCAACAGAAAGGCCATCAAGAAGTGTAGTTTCAAAAAAATGGAGTCTTTTTCTATGTCTTGGAAGTTTTTGTGCTGGAATGTTCTTCACAAACAG : AATGTGGATAGTTTCTGAAACAAAAGAAGGAATTACAAGAACAACTACAGTTGAAGCTGAAAGATTGAAATTAATTTCAGAGAATTGCATTACAAAATTT : TTGCAGCAGCAAGATGTAAAACTTGTATCCAAAGATAATTTTGGGATATTAGATAAAACCATTTCAAATTTGGAGATAGAGTTGGCTGAAGCAAAGGCAGCTCACGAGTCGATTCTCAGTGGGGTTCCGATATCAGAAGAGATTGAAAAGGGTGAATCACGAAGAAGAAGAAAATATTTTATGGTGGTAGGAATAAACACTGCATTTAGTAGCAGAAAAAGAAGGGATTCAGTTCGCGCTACATGGATGCCACAAG : GTGAAAAAAGAAGGAAGCTGGAAGAAGAGAAAGGAATAATCATTCGCTTCGTCATTGGTCATAG : TGCCACATTAGGGGGCATATTAGACAAAGCTATTGAAGCTGAGGACAAAAAGCACGGTGATTTCTTGCGTCTG : GATCATATTGAGGGTTATCTTGAATTGTCCGCCAAGACGAAGACTTACTTTGCCACAGCTGTTAACTTATGGGATGCTGAGTATTACATCAAGGTTGATGATGATGTTCATGTCAATATAG : CTACACTGGCGGAAACATTAGTAAGGCATAGTAAAAAACCACGTATATATATCGGGTGCATGAAATCTGGTCCTGTCCTTTCCAGGAA : GGGTGTAAGGTATCATGAACCGGAATATTGGAAATTCGGAGACAAGTATTTTCGTCATGCTACTGGACAAATATATGCCATTTCTAAAGACTTAGCTACTTACATATCAGCAAACCA : CTTTTGGAAGATCTGACATACACCCTTCAGTATTTTTGATGAGTCCGAGCAGCCTCTTACATATGTATACTCTTCTTGATATGTTAAGGCATGTACTTCATAAATATACAAACGAAGATGTGTCACTGGGAGCTTGGTTTATTGGACTCGATGTGCAGCATATCGATGATCGTAGACTGTGTTGTGGAACCCCACCTG : ATTGTGAATGGAAGGCACAGGCAGGCAACGTTTGTGTTGCCTCTTTCGACTGGACCTGCAGTGGAATATGCAGGTCTGTCGATAGGATGAAGGAGGTCCATCGCCATTGTGGCGAGGGAGAGAATGCACTATGGAAAGCTGCATTCTGAGGACATTCACTATGTCAAAATGTCACATTCTTTTGGTTGGAAGTACATATTATACGTATGATCAAAGGCGAATTCAGAATCCAGAATGTTGAGTAAGTGGTTTGAAAATAAGTGTAATTGTATTATATGTATACATTTTGTCTTTTTTTTTCTTCATATGTATACATAGTTCGAGCGGAAAAGCAGTCGATTCAGTTGAACCTGTAGAGGTTTAGCTGTGGGGAAACCTACTACATTTTTGTAACAAATAAACTCATATCATTGTACATATCTCTAATAATGCAAGTGGAATGAATTGTTCGAGGATTTAACTTATAGACACCGACATTGTAAAAAAAAAACTGTAAAATTTATTCGACTACAAAATATATTCAGACATAAATTAAATAAATATGAAATCCTAAATTTCTTTGGAATTATTGCTCAA</gDNA_template>
            <first_frame> V  I  F  L  K  L  C  S  *  D  S  L  F  L  *  K  R  L  *  L  Y  W  L  L  G  V  *  D  F  G  F  P  C  L  V  L  I  L  K  L  *  L  *  S  *  F  A  G  F  L  E  E  F  K  I  E  T  S  G  *  G  C  V  *  Y  V  F  Q  E  Q  R  S  N  R  K  A  I  K  K  C  S  F  K  K  M  E  S  F  S  M  S  W  K  F  L  C  W  N  V  L  H  K  Q  :  N  V  D  S  F  *  N  K  R  R  N  Y  K  N  N  Y  S  *  S  *  K  I  E  I  N  F  R  E  L  H  Y  K  I   : F  A  A  A  R  C  K  T  C  I  Q  R  *  F  W  D  I  R  *  N  H  F  K  F  G  D  R  V  G  *  S  K  G  S  S  R  V  D  S  Q  W  G  S  D  I  R  R  D  *  K  G  *  I  T  K  K  K  K  I  F  Y  G  G  R  N  K  H  C  I  *  *  Q  K  K  K  G  F  S  S  R  Y  M  D  A  T  R :   *  K  K  K  E  A  G  R  R  E  R  N  N  H  S  L  R  H  W  S  *  :  C  H  I  R  G  H  I  R  Q  S  Y  *  S  *  G  Q  K  A  R  *  F  L  A  S   : G  S  Y  *  G  L  S  *  I  V  R  Q  D  E  D  L  L  C  H  S  C  *  L  M  G  C  *  V  L  H  Q  G  *  *  *  C  S  C  Q  Y  S :   Y  T  G  G  N  I  S  K  A  *  *  K  T  T  Y  I  Y  R  V  H  E  I  W  S  C  P  F  Q  E  :  G  C  K  V  S  *  T  G  I  L  E  I  R  R  Q  V  F  S  S  C  Y  W  T  N  I  C  H  F  *  R  L  S  Y  L  H  I  S  K  P  :  L  L  E  D  L  T  Y  T  L  Q  Y  F  *  *  V  R  A  A  S  Y  I  C  I  L  F  L  I  C  *  G  M  Y  F  I  N  I  Q  T  K  M  C  H  W  E  L  G  L  L  D  S  M  C  S  I  S  M  I  V  D  C  V  V  E  P  H  L  :  I  V  N  G  R  H  R  Q  A  T  F  V  L  P  L  S  T  G  P  A  V  E  Y  A  G  L  S  I  G  *  R  R  S  I  A  I  V  A  R  E  R  M  H  Y  G  K  L  H  S  E  D  I  H  Y  V  K  M  S  H  S  F  G  W  K  Y  I  L  Y  V  *  S  K  A  N  S  E  S  R  M  L  S  K  W  F  E  N  K  C  N  C  I  I  C  I  H  F  V  F  F  F  L  H  M  Y  T  *  F  E  R  K  S  S  R  F  S  *  T  C  R  G  L  A  V  G  K  P  T  T  F  L  *  Q  I  N  S  Y  H  C  T  Y  L  *  *  C  K  W  N  E  L  F  E  D  L  T  Y  R  H  R  H  C  K  K  K  T  V  K  F  I  R  L  Q  N  I  F  R  H  K  L  N  K  Y  E  I  L  N  F  F  G  I  I  A  Q </first_frame>
            <second_frame>  *  F  S  S  N  F  V  P  R  I  H  F  F  C  K  K  D  Y  S  F  I  G  Y  W  V  S  E  I  L  V  F  R  V  W  Y  S  Y  *  S  S  D  C  N  L  D  S  R  A  F  *  K  S  S  K  S  R  R  L  V  K  G  V  F  D  M  Y  F  K  N  R  G  A  T  E  R  P  S  R  S  V  V  S  K  K  W  S  L  F  L  C  L  G  S  F  C  A  G  M  F  F  T  N  R :   M  W  I  V  S  E  T  K  E  G  I  T  R  T  T  T  V  E  A  E  R  L  K  L  I  S  E  N  C  I  T  K  F  :  L  Q  Q  Q  D  V  K  L  V  S  K  D  N  F  G  I  L  D  K  T  I  S  N  L  E  I  E  L  A  E  A  K  A  A  H  E  S  I  L  S  G  V  P  I  S  E  E  I  E  K  G  E  S  R  R  R  R  K  Y  F  M  V  V  G  I  N  T  A  F  S  S  R  K  R  R  D  S  V  R  A  T  W  M  P  Q   : G  E  K  R  R  K  L  E  E  E  K  G  I  I  I  R  F  V  I  G  H  S :   A  T  L  G  G  I  L  D  K  A  I  E  A  E  D  K  K  H  G  D  F  L  R  L  :  D  H  I  E  G  Y  L  E  L  S  A  K  T  K  T  Y  F  A  T  A  V  N  L  W  D  A  E  Y  Y  I  K  V  D  D  D  V  H  V  N  I   : A  T  L  A  E  T  L  V  R  H  S  K  K  P  R  I  Y  I  G  C  M  K  S  G  P  V  L  S  R  K :   G  V  R  Y  H  E  P  E  Y  W  K  F  G  D  K  Y  F  R  H  A  T  G  Q  I  Y  A  I  S  K  D  L  A  T  Y  I  S  A  N  H :   F  W  K  I  *  H  T  P  F  S  I  F  D  E  S  E  Q  P  L  T  Y  V  Y  S  S  *  Y  V  K  A  C  T  S  *  I  Y  K  R  R  C  V  T  G  S  L  V  Y  W  T  R  C  A  A  Y  R  *  S  *  T  V  L  W  N  P  T  * :   L  *  M  E  G  T  G  R  Q  R  L  C  C  L  F  R  L  D  L  Q  W  N  M  Q  V  C  R  *  D  E  G  G  P  S  P  L  W  R  G  R  E  C  T  M  E  S  C  I  L  R  T  F  T  M  S  K  C  H  I  L  L  V  G  S  T  Y  Y  T  Y  D  Q  R  R  I  Q  N  P  E  C  *  V  S  G  L  K  I  S  V  I  V  L  Y  V  Y  I  L  S  F  F  F  F  I  C  I  H  S  S  S  G  K  A  V  D  S  V  E  P  V  E  V  *  L  W  G  N  L  L  H  F  C  N  K  *  T  H  I  I  V  H  I  S  N  N  A  S  G  M  N  C  S  R  I  *  L  I  D  T  D  I  V  K  K  K  L  *  N  L  F  D  Y  K  I  Y  S  D  I  N  *  I  N  M  K  S  *  I  S  L  E  L  L  L   </second_frame>
            <third_frame>   N  F  P  Q  T  L  F  L  G  F  T  F  S  V  K  K  I  I  A  L  L  V  I  G  C  L  R  F  W  F  S  V  S  G  T  H  I  E  A  L  T  V  I  L  I  R  G  L  S  R  R  V  Q  N  R  D  V  W  L  R  V  C  L  I  C  I  S  R  T  E  E  Q  Q  K  G  H  Q  E  V  *  F  Q  K  N  G  V  F  F  Y  V  L  E  V  F  V  L  E  C  S  S  Q  T   : E  C  G  *  F  L  K  Q  K  K  E  L  Q  E  Q  L  Q  L  K  L  K  D  *  N  *  F  Q  R  I  A  L  Q  N  F :   C  S  S  K  M  *  N  L  Y  P  K  I  I  L  G  Y  *  I  K  P  F  Q  I  W  R  *  S  W  L  K  Q  R  Q  L  T  S  R  F  S  V  G  F  R  Y  Q  K  R  L  K  R  V  N  H  E  E  E  E  N  I  L  W  W  *  E  *  T  L  H  L  V  A  E  K  E  G  I  Q  F  A  L  H  G  C  H  K  :  V  K  K  E  G  S  W  K  K  R  K  E  *  S  F  A  S  S  L  V  I   : V  P  H  *  G  A  Y  *  T  K  L  L  K  L  R  T  K  S  T  V  I  S  C  V  W :   I  I  L  R  V  I  L  N  C  P  P  R  R  R  L  T  L  P  Q  L  L  T  Y  G  M  L  S  I  T  S  R  L  M  M  M  F  M  S  I  *  :  L  H  W  R  K  H  *  *  G  I  V  K  N  H  V  Y  I  S  G  A  *  N  L  V  L  S  F  P  G   : R  V  *  G  I  M  N  R  N  I  G  N  S  E  T  S  I  F  V  M  L  L  D  K  Y  M  P  F  L  K  T  *  L  L  T  Y  Q  Q  T   : T  F  G  R  S  D  I  H  P  S  V  F  L  M  S  P  S  S  L  L  H  M  Y  T  L  L  D  M  L  R  H  V  L  H  K  Y  T  N  E  D  V  S  L  G  A  W  F  I  G  L  D  V  Q  H  I  D  D  R  R  L  C  C  G  T  P  P   : D  C  E  W  K  A  Q  A  G  N  V  C  V  A  S  F  D  W  T  C  S  G  I  C  R  S  V  D  R  M  K  E  V  H  R  H  C  G  E  G  E  N  A  L  W  K  A  A  F  *  G  H  S  L  C  Q  N  V  T  F  F  W  L  E  V  H  I  I  R  M  I  K  G  E  F  R  I  Q  N  V  E  *  V  V  *  K  *  V  *  L  Y  Y  M  Y  T  F  C  L  F  F  S  S  Y  V  Y  I  V  R  A  E  K  Q  S  I  Q  L  N  L  *  R  F  S  C  G  E  T  Y  Y  I  F  V  T  N  K  L  I  S  L  Y  I  S  L  I  M  Q  V  E  *  I  V  R  G  F  N  L  *  T  P  T  L  *  K  K  N  C  K  I  Y  S  T  T  K  Y  I  Q  T  *  I  K  *  I  *  N  P  K  F  L  W  N  Y  C  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0090D09.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37539" stop="37382"/>
                    <exon start="36832" stop="36733"/>
                    <exon start="36648" stop="36393"/>
                    <exon start="36300" stop="36237"/>
                    <exon start="35754" stop="35682"/>
                    <exon start="35563" stop="35443"/>
                    <exon start="35307" stop="35220"/>
                    <exon start="35143" stop="35027"/>
                    <exon start="34908" stop="34893"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>990</number_coding_nucleotides>
                  <number_encoded_amino_acids>330</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSSKSRRLVKGVFDMYFKNRGATERPSRSVVSKKWSLFLCLGSFCAGMFFTNRMWIVSETKEGITRTTTVEAERLKLISENCITKFLQQQDVKLVSKDNFGILDKTISNLEIELAEAKAAHESILSGVPISEEIEKGESRRRRKYFMVVGINTAFSSRKRRDSVRATWMPQGEKRRKLEEEKGIIIRFVIGHSATLGGILDKAIEAEDKKHGDFLRLDHIEGYLELSAKTKTYFATAVNLWDAEYYIKVDDDVHVNIATLAETLVRHSKKPRIYIGCMKSGPVLSRKGVRYHEPEYWKFGDKYFRHATGQIYAISKDLATYISANHFWKI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0090D09.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34821" stop="34711"/>
                    <exon start="34454" stop="34365"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GMYFINIQTKMCHWELGLLDSMCSISMIVDCVVEPHLIVNGRHRQATFVLPLSTGPAVEYAGLSIG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="41786" PGL_stop="38912"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41786" e_stop="41354"/>
            <exon e_start="41264" e_stop="41084"/>
            <exon e_start="40971" e_stop="40873"/>
            <exon e_start="40603" e_stop="40440"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.685" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.099" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41786" e_stop="41354" e_length="433"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.685">
            <gDNA_intron_boundary i_start="41353" i_stop="41265" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41264" e_stop="41084" e_length="181"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="41083" i_stop="40972" i_length="112"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="40971" e_stop="40873" e_length="99"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.099">
            <gDNA_intron_boundary i_start="40872" i_stop="40604" i_length="269"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="40603" e_stop="40440" e_length="164"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41786" stop="41354"/>
              <exon start="41264" stop="41232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41425" stop="41354"/>
              <exon start="41264" stop="41084"/>
              <exon start="40971" stop="40873"/>
              <exon start="40603" stop="40440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244107" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAATGCTGAGTGGAAATAACGATAAACACTCACCCTTTGAAGCAATTTAGCTGTTGGGATGGTGTAAACTGGATTTTTGTGTTAACAGTTGCTTTCTGATGTGTCTCTCGATTCTCTTTCCATTAGTAGATCATCTGGCCTGTAAATGTAGGGGGGAAATAAAGAAATGCGAAGTTAAAGACTTGTTGCTGAGATTAATAGTTTAATACAATACTCTTTGACAATTAAACAAAATGAAGCTTAAGGAGAGTTTGACTTGGTCATTTAGTTTGACATTAAAGACATCAGATATTCTGAATGGGTGCTCAATTTTTTTCTTTTCTTTCTGAACTATAAATGTTTATGGCAGTACTGCTGCGGGTCTTTATATTCTTCTTCGAGCAGCTGACCGGTTTGCTGCGAACTATAACAAATTTCCTGGACAATTTGATGG : TGAGATGGATGAGGATATATCCCGGCTGAAAACTACAGCTGTTGGCCTACTCAATGACCTTGGTTGCAATGGTTCTTCTGTATCAGAGGACCTTATTAATGAGATGTGTCGGTATGGTGCTTCGGAGCTTCATGTTGTAGCTGCCTTTGTTGGAGGAGTCACATCACAAGAAGTGATCAAG : CTCATCACTAGACAATTCATTCCCATGTCTGGAACTTTCATCTTTAATGGCATAGATCACAAATCTCAACTGTTGTTGCTCTAGTCTCTGAATTCACAG : ATAGCATTTCTTCAGTTTTCAATCTTCAGATGAGTCCTACAGCAGCATGTGAAAAGGAAAGTTTGTCATACTTCCTTTGATTTGCAGGAAATTTAGGATCAGTGAAAGATTTTTAAGAAAGAGAGTACATTTCTTGACAAGCGCCTAGGACGCTGATCCATTGG</gDNA_template>
            <first_frame> *  C  *  V  E  I  T  I  N  T  H  P  L  K  Q  F  S  C  W  D  G  V  N  W  I  F  V  L  T  V  A  F  *  C  V  S  R  F  S  F  H  *  *  I  I  W  P  V  N  V  G  G  K  *  R  N  A  K  L  K  T  C  C  *  D  *  *  F  N  T  I  L  F  D  N  *  T  K  *  S  L  R  R  V  *  L  G  H  L  V  *  H  *  R  H  Q  I  F  *  M  G  A  Q  F  F  S  F  L  S  E  L  *  M  F  M  A  V  L  L  R  V  F  I  F  F  F  E  Q  L  T  G  L  L  R  T  I  T  N  F  L  D  N  L  M   : V  R  W  M  R  I  Y  P  G  *  K  L  Q  L  L  A  Y  S  M  T  L  V  A  M  V  L  L  Y  Q  R  T  L  L  M  R  C  V  G  M  V  L  R  S  F  M  L  *  L  P  L  L  E  E  S  H  H  K  K  *  S  S :   S  S  L  D  N  S  F  P  C  L  E  L  S  S  L  M  A  *  I  T  N  L  N  C  C  C  S  S  L  *  I  H  R :   *  H  F  F  S  F  Q  S  S  D  E  S  Y  S  S  M  *  K  G  K  F  V  I  L  P  L  I  C  R  K  F  R  I  S  E  R  F  L  R  K  R  V  H  F  L  T  S  A  *  D  A  D  P  L  </first_frame>
            <second_frame>  N  A  E  W  K  *  R  *  T  L  T  L  *  S  N  L  A  V  G  M  V  *  T  G  F  L  C  *  Q  L  L  S  D  V  S  L  D  S  L  S  I  S  R  S  S  G  L  *  M  *  G  G  N  K  E  M  R  S  *  R  L  V  A  E  I  N  S  L  I  Q  Y  S  L  T  I  K  Q  N  E  A  *  G  E  F  D  L  V  I  *  F  D  I  K  D  I  R  Y  S  E  W  V  L  N  F  F  L  F  F  L  N  Y  K  C  L  W  Q  Y  C  C  G  S  L  Y  S  S  S  S  S  *  P  V  C  C  E  L  *  Q  I  S  W  T  I  *  W  :  *  D  G  *  G  Y  I  P  A  E  N  Y  S  C  W  P  T  Q  *  P  W  L  Q  W  F  F  C  I  R  G  P  Y  *  *  D  V  S  V  W  C  F  G  A  S  C  C  S  C  L  C  W  R  S  H  I  T  R  S  D  Q   : A  H  H  *  T  I  H  S  H  V  W  N  F  H  L  *  W  H  R  S  Q  I  S  T  V  V  A  L  V  S  E  F  T   : D  S  I  S  S  V  F  N  L  Q  M  S  P  T  A  A  C  E  K  E  S  L  S  Y  F  L  *  F  A  G  N  L  G  S  V  K  D  F  *  E  R  E  Y  I  S  *  Q  A  P  R  T  L  I  H  W </second_frame>
            <third_frame>   M  L  S  G  N  N  D  K  H  S  P  F  E  A  I  *  L  L  G  W  C  K  L  D  F  C  V  N  S  C  F  L  M  C  L  S  I  L  F  P  L  V  D  H  L  A  C  K  C  R  G  E  I  K  K  C  E  V  K  D  L  L  L  R  L  I  V  *  Y  N  T  L  *  Q  L  N  K  M  K  L  K  E  S  L  T  W  S  F  S  L  T  L  K  T  S  D  I  L  N  G  C  S  I  F  F  F  S  F  *  T  I  N  V  Y  G  S  T  A  A  G  L  Y  I  L  L  R  A  A  D  R  F  A  A  N  Y  N  K  F  P  G  Q  F  D  G :   E  M  D  E  D  I  S  R  L  K  T  T  A  V  G  L  L  N  D  L  G  C  N  G  S  S  V  S  E  D  L  I  N  E  M  C  R  Y  G  A  S  E  L  H  V  V  A  A  F  V  G  G  V  T  S  Q  E  V  I  K  :  L  I  T  R  Q  F  I  P  M  S  G  T  F  I  F  N  G  I  D  H  K  S  Q  L  L  L  L  *  S  L  N  S  Q  :  I  A  F  L  Q  F  S  I  F  R  *  V  L  Q  Q  H  V  K  R  K  V  C  H  T  S  F  D  L  Q  E  I  *  D  Q  *  K  I  F  K  K  E  S  T  F  L  D  K  R  L  G  R  *  S  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0090D09.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41457" stop="41354"/>
                    <exon start="41264" stop="41084"/>
                    <exon start="40971" stop="40888"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TINVYGSTAAGLYILLRAADRFAANYNKFPGQFDGEMDEDISRLKTTAVGLLNDLGCNGSSVSEDLINEMCRYGASELHVVAAFVGGVTSQEVIKLITRQFIPMSGTFIFNGIDHKSQLLLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="40975" e_stop="40873"/>
            <exon e_start="40603" e_stop="40264"/>
            <exon e_start="38945" e_stop="38912"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.099" e_score="0.932"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.982"/>
          <exon-only e_score="0.706"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="40975" e_stop="40873" e_length="103"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.099">
            <gDNA_intron_boundary i_start="40872" i_stop="40604" i_length="269"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="40603" e_stop="40264" e_length="340"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="40263" i_stop="38946" i_length="1318"/>
          </intron>
          <exon e_serial="3" e_score="0.706">
            <gDNA_exon_boundary e_start="38945" e_stop="38912" e_length="34"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40975" stop="40873"/>
              <exon start="40603" stop="40264"/>
              <exon start="38945" stop="38912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274266" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAGCTCATCACTAGACAATTCATTCCCATGTCTGGAACTTTCATCTTTAATGGCATAGATCACAAATCTCAACTGTTGTTGCTCTAGTCTCTGAATTCACAG : ATAGCATTTCTTCAGTTTTCAATCTTCAGATGAGTCCTACAGCAGCATGTGAAAAGGAAAGTTTGTCATACTTCCTTTGATTTGCAGGAAATTTAGGATCAGTGAAAGATTTTTAAGAAAGAGAGTACATTTCTTGACAAGCGCCTAGGACGCTGATCCATTGGTAACAGCACAACACGTGATGTGTGGTTTAGGTGCACGTCACGAGTTTGAACATGCTGTGGACTAAAATGATAGTTTTAGCTTTTTTAGAAACAGATATATAGGGGTTGTTTCATTTTGATATCCTATTTCATCTCATTTTTCTTAACCTGCAGTCTGCAATTTGATCTAACTAAAA : AAATAAAAAAATAGAAATAACAAAGAAAGTTTGT</gDNA_template>
            <first_frame> A  A  H  H  *  T  I  H  S  H  V  W  N  F  H  L  *  W  H  R  S  Q  I  S  T  V  V  A  L  V  S  E  F  T   : D  S  I  S  S  V  F  N  L  Q  M  S  P  T  A  A  C  E  K  E  S  L  S  Y  F  L  *  F  A  G  N  L  G  S  V  K  D  F  *  E  R  E  Y  I  S  *  Q  A  P  R  T  L  I  H  W  *  Q  H  N  T  *  C  V  V  *  V  H  V  T  S  L  N  M  L  W  T  K  M  I  V  L  A  F  L  E  T  D  I  *  G  L  F  H  F  D  I  L  F  H  L  I  F  L  N  L  Q  S  A  I  *  S  N  *  K :   N  K  K  I  E  I  T  K  K  V  C </first_frame>
            <second_frame>  Q  L  I  T  R  Q  F  I  P  M  S  G  T  F  I  F  N  G  I  D  H  K  S  Q  L  L  L  L  *  S  L  N  S  Q  :  I  A  F  L  Q  F  S  I  F  R  *  V  L  Q  Q  H  V  K  R  K  V  C  H  T  S  F  D  L  Q  E  I  *  D  Q  *  K  I  F  K  K  E  S  T  F  L  D  K  R  L  G  R  *  S  I  G  N  S  T  T  R  D  V  W  F  R  C  T  S  R  V  *  T  C  C  G  L  K  *  *  F  *  L  F  *  K  Q  I  Y  R  G  C  F  I  L  I  S  Y  F  I  S  F  F  L  T  C  S  L  Q  F  D  L  T  K   : K  I  K  K  *  K  *  Q  R  K  F   </second_frame>
            <third_frame>   S  S  S  L  D  N  S  F  P  C  L  E  L  S  S  L  M  A  *  I  T  N  L  N  C  C  C  S  S  L  *  I  H  R :   *  H  F  F  S  F  Q  S  S  D  E  S  Y  S  S  M  *  K  G  K  F  V  I  L  P  L  I  C  R  K  F  R  I  S  E  R  F  L  R  K  R  V  H  F  L  T  S  A  *  D  A  D  P  L  V  T  A  Q  H  V  M  C  G  L  G  A  R  H  E  F  E  H  A  V  D  *  N  D  S  F  S  F  F  R  N  R  Y  I  G  V  V  S  F  *  Y  P  I  S  S  H  F  S  *  P  A  V  C  N  L  I  *  L  K  :  K  *  K  N  R  N  N  K  E  S  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0090D09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="40347" PGL_stop="40600"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40347" e_stop="40600"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="40347" e_stop="40600" e_length="254"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40347" stop="40600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427558" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTTTCTAAAAAAGCTAAAACTATCATTTTAGTCCACAGCATGTTCAAACTCGTGACGTGCACCTAAACCACACATCACGTGTTGTGCTGTTACCAATGGATCAGCGTCCTAGGCGCTTGTCAAGAAATGTACTCTCTTTCTTAAAAATCTTTCACTGATCCTAAATTTCCTGCAAATCAAAGGAAGTATGACAAACTTTCCTTTTCACATGCTGCTGTAGGACTCATCTGAAGATTGAAAACTGAAGAAATGC</gDNA_template>
            <first_frame> C  F  *  K  S  *  N  Y  H  F  S  P  Q  H  V  Q  T  R  D  V  H  L  N  H  T  S  R  V  V  L  L  P  M  D  Q  R  P  R  R  L  S  R  N  V  L  S  F  L  K  I  F  H  *  S  *  I  S  C  K  S  K  E  V  *  Q  T  F  L  F  T  C  C  C  R  T  H  L  K  I  E  N  *  R  N   </first_frame>
            <second_frame>  V  S  K  K  A  K  T  I  I  L  V  H  S  M  F  K  L  V  T  C  T  *  T  T  H  H  V  L  C  C  Y  Q  W  I  S  V  L  G  A  C  Q  E  M  Y  S  L  S  *  K  S  F  T  D  P  K  F  P  A  N  Q  R  K  Y  D  K  L  S  F  S  H  A  A  V  G  L  I  *  R  L  K  T  E  E  M  </second_frame>
            <third_frame>   F  L  K  K  L  K  L  S  F  *  S  T  A  C  S  N  S  *  R  A  P  K  P  H  I  T  C  C  A  V  T  N  G  S  A  S  *  A  L  V  K  K  C  T  L  F  L  K  N  L  S  L  I  L  N  F  L  Q  I  K  G  S  M  T  N  F  P  F  H  M  L  L  *  D  S  S  E  D  *  K  L  K  K  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0090D09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 60 chains have been computed
$ 
$ memory statistics:
$ 107592 bytes spliced alignments in total
$ 33 spliced alignments have been stored
$ 3260 bytes was the average size of a spliced alignment
$ 12888 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 2148 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 70 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-18 05:36:35
-->
