<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 13:45:49"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0133N05-9n0MA/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0133N05-9n0MA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0133N05-9n0MA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344727" ref_strand="+" ref_description="SGN-U344727        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|13924730|gb|AAK49115.1| receptor-like protein kinase [Lycopersicon esculentum](evalue: 2e-17, score=90.5)">
      <seq>cttgggaaagagaaccttgatgaggggttgcacattgcaagctcgattaggaagagcatgagtattcatagcaaaggaggtgattctattcgtggaggatcaacacgaaggggaggaggatcacaaagtggtaaggctatgggagatctcgtgttagtgaacaacgaaaatggtacattcggattgcctgatttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0133N05-9n0MA/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0133N05.1" temp_strand="+" temp_description="C12HBa0133N05.1  AC216296.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0133N05 upload_account_name:italy">
        <position start="1" stop="501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4" g_stop="201" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0133N05.1" gen_strand="+" ref_id="SGN-U344727" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>198</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0133N05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U344727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4" e_stop="201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGGAAAGAGAACCTTGATGAGGGGTTGCACATTGCAAGCTCGATTAGGAAGAGCATGAGTATTCATAGCAAAGGAGGTGATTCTATTCGTGGAGGATCAACACGAAGGGGAGGAGGATCACAAAGTGGTAAGGCTATGGGAGATCTCGTGTTAGTGAACAACGAAAATGGTACATTCGGATTGCCTGATTTGATG</genome_strand>
        <mrna_strand>CTTGGGAAAGAGAACCTTGATGAGGGGTTGCACATTGCAAGCTCGATTAGGAAGAGCATGAGTATTCATAGCAAAGGAGGTGATTCTATTCGTGGAGGATCAACACGAAGGGGAGGAGGATCACAAAGTGGTAAGGCTATGGGAGATCTCGTGTTAGTGAACAACGAAAATGGTACATTCGGATTGCCTGATTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0133N05-9n0MA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328288" ref_strand="+" ref_description="SGN-U328288        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: AT5G20690.1 | Symbol: None | leucine-rich repeat transmembrane protein kinase, putative, receptor-like protein kinase PRK1, tomato, PIR:T07865 | chr5:7002455-7004553 FORWARD | Aliases: T1M15.90, T1M15_90 (evalue: 2e-49, score=191) genbank/nr: gi|13506810|gb|AAK28345.1| receptor-like protein kinase 3 [Lycopersicon esculentum](evalue: 3e-50, score=200)">
      <seq>gaaaatacgagccacttttatcagattacgccttctatccactgatcaacaacacacaaatagttcaatcccttttcgcgtataaagcaccagaagccacacaacatcaacatctcactccaaaatgtgacatatattgtcttggaatcataatactagaaatccttacagggaaatttccttctcagtatctcaacaatcaaaaaggtggaacggatgttgttcaatgggtgcaatcagctatagctgaccaaagagaatccgaattgattgatccagagatagcgtctgcaacagattccgttgaacaaatggtgaaactccttcatgtaggagctgcttgtactataagcgatccggataagaggattgatatgaaggaagcattaaggaggatagaagagataagtttaatatgataatgaacataacacgaaaggttagtagattttcgtgtgaaagctttagttacgttacatgccagaagagagcgatccttatagcctcatttgattccgttttatctcagttaaactctacaacgtctctcgactcacttcatttgccaaacaaaacagagtttactgtatctaaaacaccaaaataagacttctaaatttccacaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0133N05-9n0MA/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0133N05.1" temp_strand="+" temp_description="C12HBa0133N05.1  AC216296.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0133N05 upload_account_name:italy">
        <position start="887" stop="2129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1187" g_stop="1829" g_length="643"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="643" r_length="643" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0133N05.1" gen_strand="+" ref_id="SGN-U328288" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0133N05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U328288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1187" e_stop="1829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATACGAGCCACTTCTATCAGATTACGCCTTCTATCCACTGATCAACAACACACAAATAGTTCAATCCCTTTTCGCGTATAAAGCACCAGAAGCCACACAACATCAACATCTCACTCCAAAATGTGACATATATTGTCTTGGAATCATAATACTAGAAATCCTTACAGGGAAATTTCCTTCTCAGTATCTCAACAATCAAAAAGGTGGAACGGATGTTGTTCAATGGGTGCAATCAGCTATAGCTGACCAAAGAGAATCCGAATTGATTGATCCAGAGATAGCGTCTGCAACAGATTCCGTTGAACAAATGGTGAAACTCCTTCATGTAGGAGCTGCTTGTACTATAAGCGATCCGGATAAGAGGATTGATATGAAGGAAGCATTAAGGAGGATAGAAGAGATAAGTTTAATATGATAATGAACATAACACGAAAGGTTAGTAGATTTTCGTGTGAAAGCTTTAGTTACGTTACATGCCAGAAGAGAGCGATCCTTATAGCCTCATTTGATTCCGTTTTATCTCAGTTAAACTCTACAACGTCTCTCGACTCACTTCATTTGCCAAACAAAACAGAGTTTACTGTATCTAAAACACCAAAATAAGACTTCTAAATTTCCACAAAAAAAAAAAAAAAAAAA</genome_strand>
        <mrna_strand>GAAAATACGAGCCACTTTTATCAGATTACGCCTTCTATCCACTGATCAACAACACACAAATAGTTCAATCCCTTTTCGCGTATAAAGCACCAGAAGCCACACAACATCAACATCTCACTCCAAAATGTGACATATATTGTCTTGGAATCATAATACTAGAAATCCTTACAGGGAAATTTCCTTCTCAGTATCTCAACAATCAAAAAGGTGGAACGGATGTTGTTCAATGGGTGCAATCAGCTATAGCTGACCAAAGAGAATCCGAATTGATTGATCCAGAGATAGCGTCTGCAACAGATTCCGTTGAACAAATGGTGAAACTCCTTCATGTAGGAGCTGCTTGTACTATAAGCGATCCGGATAAGAGGATTGATATGAAGGAAGCATTAAGGAGGATAGAAGAGATAAGTTTAATATGATAATGAACATAACACGAAAGGTTAGTAGATTTTCGTGTGAAAGCTTTAGTTACGTTACATGCCAGAAGAGAGCGATCCTTATAGCCTCATTTGATTCCGTTTTATCTCAGTTAAACTCTACAACGTCTCTCGACTCACTTCATTTGCCAAACAAAACAGAGTTTACTGTATCTAAAACACCAAAATAAGACTTCTAAATTTCCACAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0133N05-9n0MA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322481" ref_strand="+" ref_description="SGN-U322481        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:6609360-6610593 REVERSE | Aliases: F14D16.29, F14D16_29(evalue: 7e-30, score=127) genbank/nr: gi|26449699|dbj|BAC41973.1| unknown protein [Arabidopsis thaliana](evalue: 4e-73, score=277)">
      <seq>gaggagccaaaaacttaaaaaaaataaaacaaaaatggcatcaaattctacagagcctacagcttcaaaaattgttgctaagctaaacttgaaggtacatccagaagggggattttactcagaaacatttagagataactcagttattctctccagatctcatcttccatctacatataaggttgatcgacctgtcagtacatgcatctacttcttgctaccttctggaagtgcgtctcatcttcaccggataccttgtgcagaaacatggcatttttatatgggagagccaatcactgtgatggagctaaacgaaactgatggcaaggtgaagttaacttgcgttggacccgatcccctcgtagatgatcaattcgtgcagtatacagtacctccaaatgtatggtttggcgcatttcccacgaaggattacaacatatcttccgatatgcaagtaacgaaagcacctacaagagatggtgagaaacatttctctctagttggatgcacttgtgctccagcattccagtttgaagattttgaattagcaaaacgttctgatcttgtctcgcgttttcctgcccacgaatcccttgtctctttgctagccttccctgatctgtgagagatatgtattcaatggcggatctagagcataatctacgggttttacataacctagtagctttttcgcggaccttgtaaaatatctatatatatttgattcttgtttcctgtttcatcttattacttgtgtgttatgtgttcagagtggcaataaaaggcaatgagtagagttattttgtgtaagttcagaatgctttgttttgctttcacttccgtttattctttttcggaatattggttttccctgaatcgaggtatatcagaaacagtctctctctacctatgaggtaaggtaaagtttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0133N05-9n0MA/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0133N05.1" temp_strand="+" temp_description="C12HBa0133N05.1  AC216296.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0133N05 upload_account_name:italy">
        <position start="2459" stop="6214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2759" g_stop="2934" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2935" i_stop="4455" i_length="1521">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4456" g_stop="4577" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="298" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4578" i_stop="5283" i_length="706">
            <donor d_prob="0.590" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5284" g_stop="5904" g_length="621"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="919" r_length="621" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="929" polyA_stop="946"/>
      <MATCH_line gen_id="C12HBa0133N05.1" gen_strand="+" ref_id="SGN-U322481" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>919</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0133N05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U322481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2759" e_stop="2934"/>
          <exon e_start="4456" e_stop="4577"/>
          <exon e_start="5284" e_stop="5904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAGCCAAAAACTTAAAAAAAATAAAACAAAAATGGCATCAAATTCTACAGAGCCTACAGCTTCAAAAATTGTTGCTAAGCTAAACTTGAAGGTACATCCAGAAGGGGGATTTTACTCAGAAACATTTAGAGATAACTCAGTTATTCTCTCCAGATCTCATCTTCCATCTACATGTAAGTTTTTTTTTTTTTTTTTTTTGTATAAATTTAATTTACTTTTTGGATCTTGAATTTCTTAGATCCCTCATGAGATTTTTGGATCTTAGATCTGTTTTTCATCCATATGTTTTTAGGATGTTTACTTGGATATTGCTATATGAAGTGTGATGGATATGTGATTTGGACTTTTAGGATCTCAAATTGCCCCCAAAAACCATGATTTGGAAATGGTAGTAACAAAAGAAATTTAATATGTAAAAAATTAGACGTAATACGTAAATATACCCTTTATTTTAACTTCATTTTACATTTACGCCCTTTAATTTTGATTGTGCACAAATCGACACTTAAACTCTTATAAAGTTAAACAAATAGACACACGAGTCCTACATGTCACAATACACGTAGGACACAAATTTTCATGGGCATAATACATAAATATGCCCTTTAACTTGGCTTCGAATCACATATATGCCCTTCAATTTTTGGTTTACACAAGTAGACACTTAAACTTGTATAAAGTAGAACAAGTAGACACACACGTCCTACATGTCATTTTTTGTCCTATGTGGTGTCCTACGTGTATTTTGCAATGTAAGACTCATGTGTTTATTTATTAGTTGGATAGTTAAAGTGTCTGTTTGTGCATTATGAAAGTTAGAGGACAAAGTTAAAATTTGAAACCAAGTTTAGGGTCCATTATATGTATTATGCCTATATAGGATGTCATGCAGGACGTTTGTGTCTATTTGTTTAATTTTATACAAGTTTAAGTGTCTGCTTGTGCACACCCAAAGTTGGAGGGCATAAATCAGAGTGCATGTTAATTTTATGTATTATGCCTAAAAAAAATTAACATGCACTCTGATTTTGCTATTTTGGGTGTGTACAAGCAGTTAATTGAACTTTTATAAAATTGAACAGTAGACACATGAGCATTCTGTGACATAATACGCATAGGACACTACATAGAATTGTTCGTTTTTATACAAGTGTATACCTGTGCGCATTCAATGTTGAAGGGCATAAATGTGAAATGATGCTAAGTTAAAAGGGCATATTTATGTATTATGCCTATTTTAAATTTTGTAGAAAGATATTCGTGTTCGGTTGTTTGAATTATATACAAGGAATAACTAGTTACTACTTTTATTGATTTGTAGATCTTTATGACATTATGCGTACTTAGAAGTTCGTCATCACAAATATCTATTTATAAAAGAAACATGAAGATATGTAATTTATTTATGGGCTTAAGATATTTCGATATTCTGTTTCTTAATTTTACTATCTCATATGTATCACCAGCAACATTTGCAGTGGTGTAACCAGTATTTCATTAAGCAAATGAAAAGCATAAGGAGGTTCAATATCTGCTATATATATCTGCATAAACCGTATAACTTTCCGCGATCTGAACCCCTTGACCTCACCGACCTCACCTGGTTCCGTCCTTGAGCATTTGCTTCATAAGATAGAGTACTATCAAATTAGTTAGTTGTTTTTTCCCTGATGTTTCGGGTTTCACCATTGCAGATAAGGTTGATCGACCTGTCAGTACATGCATCTACTTCTTGCTACCTTCTGGAAGTGCGTCTCATCTTCACCGGATACCTTGTGCAGAAACATGGCATTTTTATATGGGAGAGCCAATCACTGTGAGATCATCTTTCCCGCAGTCTACTTTATGCACCAGATTAGGATTATCTCTGTGCTGTTCTGTATATTTATGTCATGCGTTGTGTGTTAAGGCTTAATACGTAAACAAACACTTAAACTTGGCCTCAGCTGGGAAGTAAACACTCCAACTTTGAGAGTGCACATCTACACGTGCACCTCAGACTCGTCTCCATTGTGTCATTTGAGCCACTCCAACTTACGAAATGATCATCTAGACACCCTCCAATATTTATATCTCACGTCAACTTGGATGTTCCATAAGACACGGTTATGACGAGTTTGAGTGATAAGTTATAAGTTGAAACCAAATTGAGGAATCTCTCTAAGTTGGAGTACTAAATTGTTAGCTGAGCCCGAGGCCAAGTTTGGATATATGTTTATGTATTATGCCTTGTGTTTTGGTGTGAACTGAAAGGGATTTGACTAACACTCAAAAGTGTTAATAAAACTTGTAAGGACTATAAGGGTCGTTAAGATTCGTTGCCTAAATAGGAAAGAGACCGCCTTTCTGAAACAGACTAAAAAGGAAAGTAATACAGGCAAATTGATACATTGGATCTTCATAATCATCTTGTTCTTTACGATAATTGAACATTTGTTGCTCCCCGGTAAGAGTGATGAACTAGTCATTCACCAATGTTTTCCTAGAAATGACGATAATGACAACACTTCTTGTGCTTTCAGGTGATGGAGCTAAACGAAACTGATGGCAAGGTGAAGTTAACTTGCGTTGGACCCGATCCCCTCGTAGATGATCAATTCGTGCAGTATACAGTACCTCCAAATGTATGGTTTGGCGCATTTCCCACGAAGGATTACAACATATCTTCCGATATGCAAGTAACGAAAGCACCTACAAGAGATGGTGAGAAACATTTCTCTCTAGTTGGATGCACTTGTGCTCCAGCATTCCAGTTTGAAGATTTTGAATTAGCAAAACGTTCTGATCTTGTCTCGCGTTTTCCTGCCCACGAATCCCTTGTCTCTTTGCTAGCCTTCCCTGATCTGTGAGAGATATGTATTCAATGGCGGATCTAGAGCATAATCTACGGGTTTTACATAACCTAGTAGCTTTTTCGCGGACCTTGTAAAATATCTATATATATTTGATTCTTGTTTCCTGTTTCATCTTATTACTTGTGTGTTATGTGTTCAGAGTGGCAATAAAAGGCAATGAGTAGAGTTATTTTGTGTAAGTTCAGAATGCTTTGTTTTGCTTTCACTTCCGTTTATTCTTTTTCGGAATATTGGTTTTCCCTGAGTCGAGGTATATCAGAAACAGTCTCTCTCTACCTATGAGGTAAG</genome_strand>
        <mrna_strand>GAGGAGCCAAAAACTTAAAAAAAATAAAACAAAAATGGCATCAAATTCTACAGAGCCTACAGCTTCAAAAATTGTTGCTAAGCTAAACTTGAAGGTACATCCAGAAGGGGGATTTTACTCAGAAACATTTAGAGATAACTCAGTTATTCTCTCCAGATCTCATCTTCCATCTACAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGGTTGATCGACCTGTCAGTACATGCATCTACTTCTTGCTACCTTCTGGAAGTGCGTCTCATCTTCACCGGATACCTTGTGCAGAAACATGGCATTTTTATATGGGAGAGCCAATCACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGGAGCTAAACGAAACTGATGGCAAGGTGAAGTTAACTTGCGTTGGACCCGATCCCCTCGTAGATGATCAATTCGTGCAGTATACAGTACCTCCAAATGTATGGTTTGGCGCATTTCCCACGAAGGATTACAACATATCTTCCGATATGCAAGTAACGAAAGCACCTACAAGAGATGGTGAGAAACATTTCTCTCTAGTTGGATGCACTTGTGCTCCAGCATTCCAGTTTGAAGATTTTGAATTAGCAAAACGTTCTGATCTTGTCTCGCGTTTTCCTGCCCACGAATCCCTTGTCTCTTTGCTAGCCTTCCCTGATCTGTGAGAGATATGTATTCAATGGCGGATCTAGAGCATAATCTACGGGTTTTACATAACCTAGTAGCTTTTTCGCGGACCTTGTAAAATATCTATATATATTTGATTCTTGTTTCCTGTTTCATCTTATTACTTGTGTGTTATGTGTTCAGAGTGGCAATAAAAGGCAATGAGTAGAGTTATTTTGTGTAAGTTCAGAATGCTTTGTTTTGCTTTCACTTCCGTTTATTCTTTTTCGGAATATTGGTTTTCCCTGAATCGAGGTATATCAGAAACAGTCTCTCTCTACCTATGAGGTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0133N05-9n0MA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319143" ref_strand="+" ref_description="SGN-U319143        Tomato 200607 #1 [14 ESTs aligned] arabidopsis/peptide: | Symbol: None | inter-alpha-trypsin inhibitor heavy chain-related, similar to SP:Q61704 Inter-alpha-trypsin inhibitor heavy chain H3 precursor {Mus musculus}; contains Pfam profile PF00092: von Willebrand factor type A domain | chr1:6602117-6605899 FORWARD | Aliases: F14D16.26, F14D16_26(evalue: 6e-45, score=178) genbank/nr: IMP(evalue: 1e-45, score=186)">
      <seq>ctccttactgatgtgtctggctatgatcgaatgattttgtgataggtgtatcccgctcaaattccagacctttcatctgaaggacctgtagtcttatcaggtagataccaaggagtgtttcctgagatgctaaaagctaaaggaatattaacagacatgagtaatttctcggtggagctgaaaggtttcaagtccaaagccatacctcttgacaaggcaagggtgaagcagcagattgaaatactcacagctcaggcatggtttacacaaaataaggatcttgaaaaaaagatagcaaaaatgagtatacaagacgccgtcatctctgagtatacacgcatggcattggtggaggcggaaaaagtgaaaatcattaagtcaaccacaaagaggaaggttcattgtgatgatgagaagatagaagaacgcttaatacagaagacaatattactacaatacccaggcttcggttttggtaatctcactgctacaattgagaatattcctcctggagccatcgataaagaggacgaagcagagattattgcaaaagcaacgtctaattgttttgggaagttgtgtggtctatgctgctgttgcagttgctgcattacagcgtgttcgaatatgaatcatcagtgtgcaattgcactcacacaatgtctaggtgcctttggatgtttaggttgcttcgcttattgtcaatactgctgttgtgaaaatcataaataaaaaaaaaagggcagctcgatggactaagctcccactatacgcggggttcggagaatggaccggaccacaagagtctgttgtggagataatcaatgagaagaaaattacaactactcctacaacttcaactttctccccatgattttgtgtcaactaatgacagattataaagttagttgatagtgaacatattcatggttctttttttatcctctccccatatttttgtataattatttttacaatatttttcaatagatacatatttttttctaagaagttgatcatcaatttgtaaataattgtattcaattgtttttgaatgttttttattggaaaaaagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0133N05-9n0MA/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0133N05.1" temp_strand="-" temp_description="C12HBa0133N05.1  AC216296.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0133N05 upload_account_name:italy">
        <position start="13151" stop="10117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12851" g_stop="12818" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12817" i_stop="12700" i_length="118">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12699" g_stop="12518" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="216" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12517" i_stop="11852" i_length="666">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11851" g_stop="11777" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="291" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11776" i_stop="11624" i_length="153">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.818" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11623" g_stop="11519" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="396" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11518" i_stop="11100" i_length="419">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11099" g_stop="10410" g_length="690"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="1086" r_length="690" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0133N05.1" gen_strand="-" ref_id="SGN-U319143" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>1086</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0133N05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U319143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12851" e_stop="12818"/>
          <exon e_start="12699" e_stop="12518"/>
          <exon e_start="11851" e_stop="11777"/>
          <exon e_start="11623" e_stop="11519"/>
          <exon e_start="11099" e_stop="10410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTTACTGATGTGTCTGGCTATGATCGAATGAATATGGAATTGTAATGATTTGTTATGAGCTCTCAGTGTCGTTTTAAAAGACTGCTATAATTAAATTGATGCAGTCTTACCTATGTAACTACATGTTTCCTGAGAAAGAACCGTTAAAATTTTGTGATAGGTGTATCCCGCTCAAATTCCAGACCTTTCATCTGAAGGACCTGTAGTCTTATCAGGTAGATACCAAGGAGTGTTTCCTGAGATGCTAAAAGCTAAAGGAATATTAACAGACATGAGTAATTTCTCGGTGGAGCTGAAAGGTTTCAAGTCCAAAGCCATACCTCTTGACAAGGTAAGGCAGCATACTCAGTAATAGATGCATAATCAATAGACAATGCATGTTTTGTGGCTTTTGGAATCGCCTGTCAATCTAGACTATTTATCTATATCTGATATTTGATCATAATGATAACTATCTTTCTATGTATTGTTATTGTATCATACATTAGATAAAAAATTGAAGGAGGTTGCTTTCCTTTAATTTCTCTTATATTTTCATCATGGCTTCTTCATTACTATATTCCCTTCTCTTACGTGCTTTGATATGCTATACTTGAGCTGAGGGTCTGTCGGACACAGTCTCTCTACCAGCACGAGGTAGGAGTAAGGTCTCTGTACACCACGCTCCCCAGACCCCACATCCCACTATAGAGTATGTTCTTATTGCTTTGCTTTGTAGGGCTCTTTCTTTGTCAATTTAAAATTTCCGGAGTTAATGAAACTGATCAGCGAAGGGTCACTTTCTTCAAACCATTTCATTCTAATACTAAATAAGGACTCTCTTTATCTATTAGTGCATACCATATTGAGGACAATTGCTCAGTTTATCTGTCTGTTTTCTTGATCGAACTACTGAGAACAGCTTATGGCTTTCCGCTGAACGCCCATATATTAGTGAACTTGGTTTAAGAGGATCCTCTTAAATATTAATTTAATCTCATGTATTTTGAACACGCAGGCAAGGGTGAAGCAGCAGATTGAAATACTCACAGCTCAGGCATGGTTTACACAAAATAAGGATCTTGAAAAAAAGGTTACTACTTCCTACTTTTTTATGTTTGAACATGAACGGTTTATCCCGATCCTATATATGACTTCACCCTTTATATTCCTGATGTTGTTCTCAAGTAGTTTTATCAACTTAGCCCTTGTCTTCCGTTACTGAGCCCTTATACTTTGTTAGCAGATAGCAAAAATGAGTATACAAGACGCCGTCATCTCTGAGTATACACGCATGGCATTGGTGGAGGCGGAAAAAGTGAAAATCATTAAGTCAACCACAAAGAGGAAGGTATGATGGAATTTTTAGAGCTTCAACTTTTGTATCATATTCTGAGTAGACAGTTTGGTAATGATAGAATTCACAAATGGCTAAACTTGCTCAGTTATCACATTTAATATTAACTCATTCGTCTACATGCTAAATGAGTAATGATGATCTCTAGAAGTTCACTTCCGAGATAATGACAATCTGGATAACAAGTCAAATAACTATATCTTGGTATTAGTTTGTGGAATTGAAATCCAGCAAGGGAAATTTAACAGCCTACTAGTGATGTTGTCCTCTGTGTTCTGCCGATGTAAGACTCTTATCCTAAGTTAGGGTGTCGTAGGAAACCTCACACCAGACTAATAAGAAAACATATGGTAAAATGATTCATTTCACTATCACACTCGTCTTCTTTCTGTAACCAAAGCTTAATGAATCAGGTTCATTGTGATGATGAGAAGATAGAAGAACGCTTAATACAGAAGACAATATTACTACAATACCCAGGCTTCGGTTTTGGTAATCTCACTGCTACAATTGAGAATATTCCTCCTGGAGCCATCGATAAAGAGGACGAAGCAGAGATTATTGCAAAAGCAACGTCTAATTGTTTTGGGAAGTTGTGTGGTCTATGCTGCTGTTGCAGTTGCTGCATTACAGCGTGTTCGAATATGAATCATCAGTGTGCAATTGCACTCACACAATGTCTAGGTGCCTTTGGATGTTTAGGTTGCTTCGCTTATTGTCAATACTGCTGTTGTGAAAATCATAAATAAAAAAAAAAGGGCAGCTCGATGGACTAAGCTCCCACTATACGCGGGGTTCGGAGAATGGACCGGACCACAAGAGTCTGTTGTGGAGATAATCAATGAGAAGAAAATTACAACTACTCCTACAACTTCAACTTTCTCCCCATGATTTTGTGTCAACTAATGACAGATTATAAAGTTAGTTGATAGTGAACATATTCATGGTTCTTTTTTTATCCTCTCCCCATATTTTTGTATAATTATTTTTACAATATTTTTCAATAGATACATATTTTTTTCTAAGAAGTTGATCATCAATTTGTAAATAATTGTATTCAATTGTTTTTGAATGTTTTTTATTGGAGAGAAGAAAATTCCTTA</genome_strand>
        <mrna_strand>CTCCTTACTGATGTGTCTGGCTATGATCGAATGA......................................................................................................................TTTTGTGATAGGTGTATCCCGCTCAAATTCCAGACCTTTCATCTGAAGGACCTGTAGTCTTATCAGGTAGATACCAAGGAGTGTTTCCTGAGATGCTAAAAGCTAAAGGAATATTAACAGACATGAGTAATTTCTCGGTGGAGCTGAAAGGTTTCAAGTCCAAAGCCATACCTCTTGACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGGGTGAAGCAGCAGATTGAAATACTCACAGCTCAGGCATGGTTTACACAAAATAAGGATCTTGAAAAAAAG.........................................................................................................................................................ATAGCAAAAATGAGTATACAAGACGCCGTCATCTCTGAGTATACACGCATGGCATTGGTGGAGGCGGAAAAAGTGAAAATCATTAAGTCAACCACAAAGAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATTGTGATGATGAGAAGATAGAAGAACGCTTAATACAGAAGACAATATTACTACAATACCCAGGCTTCGGTTTTGGTAATCTCACTGCTACAATTGAGAATATTCCTCCTGGAGCCATCGATAAAGAGGACGAAGCAGAGATTATTGCAAAAGCAACGTCTAATTGTTTTGGGAAGTTGTGTGGTCTATGCTGCTGTTGCAGTTGCTGCATTACAGCGTGTTCGAATATGAATCATCAGTGTGCAATTGCACTCACACAATGTCTAGGTGCCTTTGGATGTTTAGGTTGCTTCGCTTATTGTCAATACTGCTGTTGTGAAAATCATAAATAAAAAAAAAAGGGCAGCTCGATGGACTAAGCTCCCACTATACGCGGGGTTCGGAGAATGGACCGGACCACAAGAGTCTGTTGTGGAGATAATCAATGAGAAGAAAATTACAACTACTCCTACAACTTCAACTTTCTCCCCATGATTTTGTGTCAACTAATGACAGATTATAAAGTTAGTTGATAGTGAACATATTCATGGTTCTTTTTTTATCCTCTCCCCATATTTTTGTATAATTATTTTTACAATATTTTTCAATAGATACATATTTTTTTCTAAGAAGTTGATCATCAATTTGTAAATAATTGTATTCAATTGTTTTTGAATGTTTTTTATTGGAAAAAAGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0133N05-9n0MA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326016" ref_strand="+" ref_description="SGN-U326016        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: AT5G20680.1 | Symbol: None | expressed protein, predicted proteins, Arabidopsis thaliana | chr5:6998105-7001912 FORWARD | Aliases: T1M15.80, T1M15_80 (evalue: 4e-148, score=520) genbank/nr: gi|15810385|gb|AAL07080.1| unknown protein [Arabidopsis thaliana](evalue: 3e-146, score=520)">
      <seq>ctgggggttatacatagagacaattttacagcaaccccggggagacaagattgcaactttgctaaaggcagatgggtcatagatgatagccgacctttatattctggatttggctgtaagcaatggttgtcatctatgtgggcttgtcgcttgacacaacgtacagattttgaatatgaaaagttacgttggcgacccaaaaattgtgagatggaagattttactggtgttaaatttctgaaaaggatgcaaaacaaaactctggcgtttatcggggattcgcttggtagacagcaatttcagtcacttatgtgtatgattagtggtggaaaagatagacctaatgttcttgatgtggggcatgaatatggtctagtgcaatctcgtggttctggtcgacctgatggatgggcttttcgatttccagacaccaaaacaactattctttattattggtctgctagtctctgtgacttgacacctataaatccatctgatcctgctactgattacgccatgcacctggaccgtcctccagcatttttgagtcatttccttccaaggttcgatgtccttgttctaaacacaggacaccattggaatagaggaaagcttaaggccaatcgatgggtcatgtatgtaggtggtgtccctaatacaaaccggaagattgtgactataggtggtgccaagaatttcacaatccacagtattgtcaattgggtgaactcacagctgccaaaataccctcatgtaaaagcattctatcggactatatcccccagacatttctttaacggagattggaacacaggaggtacatgtgacaacactacaccactttccgaagggaaggaggttttacaagacgaatcaagtgactatgatgcagcacgtgctgttagaggaacagacgttaagcttttggacatcactgctttatcccagctgagagatgaaggtcatatatctcgatacagcatcaaagcaacaccaggtgtccaggattgtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0133N05-9n0MA/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0133N05.1" temp_strand="-" temp_description="C12HBa0133N05.1  AC216296.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0133N05 upload_account_name:italy">
        <position start="20901" stop="18713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20601" g_stop="20554" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20553" i_stop="20389" i_length="165">
            <donor d_prob="0.995" d_score="0.88"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20388" g_stop="20193" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="245" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20192" i_stop="19782" i_length="411">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19781" g_stop="19013" g_length="769"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="1014" r_length="769" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0133N05.1" gen_strand="-" ref_id="SGN-U326016" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1013</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0133N05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20601" e_stop="20554"/>
          <exon e_start="20388" e_stop="20193"/>
          <exon e_start="19781" e_stop="19013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGGGGTGA-ACATAGTGACAATTTTACAGCAACCCCGGAAAGACAAGGTGGCCTATCTTTCCTTTTTTATCCTTATTTATCTAATCACTGATTTGCTTTGTCATTTTCTCCGACCATGCAATCGTTGATATTGTTAAACTCAGAATTTGTCTACCAGTTCTTGAGATATCCCTTCTTTGGGTCTTCTATAATATGATAAGCCTTGTTTTCAGATTGCAACTTTGCTAAAGGCAGATGGGTCATAGATGATAGCCGACCTTTATATTCTGGATTTGGCTGTAAGCAATGGTTGTCATCTATGTGGGCTTGTCGCTTGACACAACGTACAGATTTTGAATATGAAAAGTTACGTTGGCGACCCAAAAATTGTGAGATGGAAGATTTTACTGGTGTTAAATTTCTGAAAAGGTAGCGTTATTTTTCTTATGAAGTCTTTATTTCTGATCCTTGAATTCAAGTTTGAGATGTGGTCTACAAAAGAAACAAAAAGTTCTTTATTAACTTTATGAAAACCTTTTCTTTATTTGTTTCTAGCACAACTCAAGTAGTGTCTACCTTCACTCCGTTGTTATTTATCCAAGGCTAATATGACGGCGTTTGGCTTAATCAAATTATTAAGATGTTAAACCTGAAATGTATAATCTGTTACTGTAGAGCTATTTTTCGTGGCTTGTGGCTTGTTGTCATGAAAAAGTATTCACAATTCCGGAAGGTTATTTCTTATTACTTAGCATTGCTATATCTCTTCCTTGAGGTGAAATTATTTGGATTTGATTATTCTACATGTAAGAGATTCACTAAATTTGATGGTGCATCCAGGATGCAAAACAAAACTCTGGCGTTTATCGGGGATTCGCTTGGTAGACAGCAATTTCAGTCACTTATGTGTATGATTAGTGGTGGAAAAGATAGACCTAATGTTCTTGATGTGGGGCATGAATATGGTCTAGTGCAATCTCGTGGTTCTGGTCGACCTGATGGATGGGCTTTTCGATTTCCAGACACCAAAACAACTATTCTTTATTATTGGTCTGCTAGTCTCTGTGACTTGACACCTATAAATCCATCTGATCCTGCTACTGATTACGCCATGCACCTGGACCGTCCTCCAGCATTTTTGAGTCATTTCCTTCCAAGGTTCGATGTCCTTGTTCTAAACACAGGACACCATTGGAATAGAGGAAAGCTTAAGGCCAATCGATGGGTCATGTATGTAGGTGGTGTCCCTAATACAAACCGGAAGATTGTGACTATAGGTGGTGCCAAGAATTTCACAATCCACAGTATTGTCAATTGGGTGAACTCACAGCTGCCAAAATACCCTCATGTAAAAGCATTCTATCGGACTATATCCCCCAGACATTTCTTTAACGGAGATTGGAACACAGGAGGTACATGTGACAACACTACACCACTTTCCGAAGGGAAGGAGGTTTTACAAGACGAATCAAGTGACTATGATGCAGCACGTGCTGTTAGAGGAACAGACGTTAAGCTTTTGGACATCACTGCTTTATCCCAGCTGAGAGATGAAGGTCATATATCTCGATACAGCATCAAAGCAACACCAGGTGTCCAGGATTGTCTA</genome_strand>
        <mrna_strand>CTGGGGGTTATACATAGAGACAATTTTACAGCAACCCCGGGGAGACAAG.....................................................................................................................................................................ATTGCAACTTTGCTAAAGGCAGATGGGTCATAGATGATAGCCGACCTTTATATTCTGGATTTGGCTGTAAGCAATGGTTGTCATCTATGTGGGCTTGTCGCTTGACACAACGTACAGATTTTGAATATGAAAAGTTACGTTGGCGACCCAAAAATTGTGAGATGGAAGATTTTACTGGTGTTAAATTTCTGAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................GATGCAAAACAAAACTCTGGCGTTTATCGGGGATTCGCTTGGTAGACAGCAATTTCAGTCACTTATGTGTATGATTAGTGGTGGAAAAGATAGACCTAATGTTCTTGATGTGGGGCATGAATATGGTCTAGTGCAATCTCGTGGTTCTGGTCGACCTGATGGATGGGCTTTTCGATTTCCAGACACCAAAACAACTATTCTTTATTATTGGTCTGCTAGTCTCTGTGACTTGACACCTATAAATCCATCTGATCCTGCTACTGATTACGCCATGCACCTGGACCGTCCTCCAGCATTTTTGAGTCATTTCCTTCCAAGGTTCGATGTCCTTGTTCTAAACACAGGACACCATTGGAATAGAGGAAAGCTTAAGGCCAATCGATGGGTCATGTATGTAGGTGGTGTCCCTAATACAAACCGGAAGATTGTGACTATAGGTGGTGCCAAGAATTTCACAATCCACAGTATTGTCAATTGGGTGAACTCACAGCTGCCAAAATACCCTCATGTAAAAGCATTCTATCGGACTATATCCCCCAGACATTTCTTTAACGGAGATTGGAACACAGGAGGTACATGTGACAACACTACACCACTTTCCGAAGGGAAGGAGGTTTTACAAGACGAATCAAGTGACTATGATGCAGCACGTGCTGTTAGAGGAACAGACGTTAAGCTTTTGGACATCACTGCTTTATCCCAGCTGAGAGATGAAGGTCATATATCTCGATACAGCATCAAAGCAACACCAGGTGTCCAGGATTGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0133N05-9n0MA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345946" ref_strand="+" ref_description="SGN-U345946        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>gcaaaaataatgtccattgatggtggaatgacttcaagtccaaacatccctaagcttcaaggatgaagggaggtttgaaggtgtcacagatctctctcatcctgatcggattcgtgtgtgcttctgttcttcttttggcatatgtgaagagcctacttctttcttcttcagtactacctcagaatcatgtcttgcagctttctccagatcttagagtgaaagatgaagaagctttgggagaaggaagcggatcggagcaatcacaagacagtgttaactttgaatctgaaaaatatcctatttatgcaaactcttcaccggtgattaaggtgactgaagagttgattactcatgaacaaagaggaggtattgctccgaatatcactgaaaaaggagattcaaaagatgtttcagataaaaaaactggtttaatacaccaggaaattgacgtttccactgctgtgagttctgggggtgaacataatgacaattttaccgcaaccccccgaaagacaagattgcaactttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0133N05-9n0MA/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0133N05.1" temp_strand="-" temp_description="C12HBa0133N05.1  AC216296.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0133N05 upload_account_name:italy">
        <position start="21977" stop="20265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21677" g_stop="21472" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21471" i_stop="21101" i_length="371">
            <donor d_prob="0.171" d_score="1.00"/>
            <acceptor a_prob="0.619" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21100" g_stop="20942" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="366" r_length="159" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20941" i_stop="20704" i_length="238">
            <donor d_prob="0.793" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20703" g_stop="20554" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="517" r_length="151" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20553" i_stop="20389" i_length="165">
            <donor d_prob="0.995" d_score="0.90"/>
            <acceptor a_prob="0.938" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20388" g_stop="20377" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="529" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0133N05.1" gen_strand="-" ref_id="SGN-U345946" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0133N05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U345946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21677" e_stop="21472"/>
          <exon e_start="21100" e_stop="20942"/>
          <exon e_start="20703" e_stop="20554"/>
          <exon e_start="20388" e_stop="20377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAAATAATGTCCATTG-TGGTGGAATGAGTTCAAGTCCAAACATCCCTAAGCTTCAAGGATGAAGGGAGGTTTGAAGGTGTCACAGATCTCTCTCATCCTGATCGGATTCGTGTGTGCTTCTGTTCTTCTTTTGGCATATGTGAAGAGCCTACTTCTTTCTTCTTCAGTACTACCTCAGAATCATGTCTTGCAGCTTTCTCCAGGTTTGCATAAACCCTCTGACGTACCATTGCTGGATGATCACCTCTGTGAGTTCTGGGGGGTGAACATAGTGACAATTTTGGTTTGGCTGGATGATTACCTTTTGTCAAATGGTTTGGCTGGATGATTACCGCTGTGATCTTACTTTATGGTGGACATATTGCTGACTTTGTTGATCTAAGTGCATTTTGCTAAGCAGTAGTTTTTTGTTCTCAACTATTTATCTCCTTTGAGAATGGTCAAGTTCGTATATTTCTGCAACTAATTTTAAGTAATAAAGGCACTATCTGAATTAGGAGTTTAGGACTCAACTCCCTGGTGGAGATGTTGCAGGATCCTGTTGAGTTACTTATTATACGCTCTTCTCTTGCAGATCTTAGAGTGAAAGATGAAGAAGCTTTGGGAGAAGGAAGCGGATCGGAGCAATCACAAGACAGTGTTAACTTTGAATCTGAAAAATATCCTACTTATGCAAACTCTTCACCGGTGATTAAGGTGACTGAAGAGTTGATTACTCATGAAGAAAGAGGAGGTAGGTGTTGTTTCAGGGCATCATAATTTTCTCATCTCAAAGTATCTAAGCCTTGATGATTTAGAGGCATCATTTAACTCATGAAAATGGCATATTGCATTGTCATATATTACATTCACAGGGTCGTCTTGACGTGCTTAAGTGAATGTACTCTTTCATTTTATTCTGAGCTTCTACTAAAGTTAACCGACTCTACTCTCTACAATTTGATATTTAATAGTTTTTTTCGGCAATGCAGGTATTGCTCCGAATATCACTGAAAAAGGAGATTCAAAAGATGTTTCAGACAAAAAAACTGGTTTAATAGAGCAGGAAATTGACGTTTCCACTGCTGTGAGTTCTGGGGGTGAACATAGTGACAATTTTACAGCAA-CCCCGGAAAGACAAGGTGGCCTATCTTTCCTTTTTTATCCTTATTTATCTAATCACTGATTTGCTTTGTCATTTTCTCCGACCATGCAATCGTTGATATTGTTAAACTCAGAATTTGTCTACCAGTTCTTGAGATATCCCTTCTTTGGGTCTTCTATAATATGATAAGCCTTGTTTTCAGATTGCAACTTTG</genome_strand>
        <mrna_strand>GCAAAAATAATGTCCATTGATGGTGGAATGACTTCAAGTCCAAACATCCCTAAGCTTCAAGGATGAAGGGAGGTTTGAAGGTGTCACAGATCTCTCTCATCCTGATCGGATTCGTGTGTGCTTCTGTTCTTCTTTTGGCATATGTGAAGAGCCTACTTCTTTCTTCTTCAGTACTACCTCAGAATCATGTCTTGCAGCTTTCTCCAG...................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGAGTGAAAGATGAAGAAGCTTTGGGAGAAGGAAGCGGATCGGAGCAATCACAAGACAGTGTTAACTTTGAATCTGAAAAATATCCTATTTATGCAAACTCTTCACCGGTGATTAAGGTGACTGAAGAGTTGATTACTCATGAACAAAGAGGAG..............................................................................................................................................................................................................................................GTATTGCTCCGAATATCACTGAAAAAGGAGATTCAAAAGATGTTTCAGATAAAAAAACTGGTTTAATACACCAGGAAATTGACGTTTCCACTGCTGTGAGTTCTGGGGGTGAACATAATGACAATTTTACCGCAACCCCCCGAAAGACAAG.....................................................................................................................................................................ATTGCAACTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0133N05-9n0MA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315855" ref_strand="+" ref_description="SGN-U315855        Tomato 200607 #1 [34 ESTs aligned] arabidopsis/peptide: AT2G05840.1 | Symbol: None | 20S proteasome alpha subunit A2 (PAA2), identical to GB:AF043519 | chr2:2234107-2236286 FORWARD | Aliases: T6P5.4, T6P5_4 (evalue: 2e-127, score=452) genbank/nr: gi|4539545|emb|CAB39975.1| PRCI [Nicotiana tabacum] >gi|12229948|sp|Q9XG77|PSA6_TOBAC Proteasome subunit alpha type 6 (20S proteasome alpha subunit A) (20S proteasome subunit alpha-1) (evalue: 2e-134, score=481)">
      <seq>ctaaatcagttcgacaaaaattttcagatcgaactgagaaaatcaaaccgtagaatcgaacaatgagtcgaggaagtggaggcggatacgatcgtcacattacgatcttctcaccggaaggtcgtctctttcaagtcgaatatgcttttaaggctgtgaaggcagctggaatcacatctattggtgtccgtggaaaggactctgtttgtgttgttactcagaagaaagtccctgacaagctattggatcagaccagtgtatcccatttgttcccaattaccaagtatcttggactattggctactggcatgacagctgatgcaagaactttggttcaacaagctcgaaatgaagctgctgagtttcgctttaaatatggttatgaaatgccagcagatgtactgtctaaatggatcgcggacaagtcccaggtttacacacagcatgcctatatgagaccccttggagtagttgctatgattttgggcattgatgaggagaaagggccccagctcttcaaatgtgaccctgctggtcatttttttggtcataaggctacaagtgccggatctaaagagcaagaggcaattaactttttggagaagaaaatgaaaaataaccctgcgttctcctatgaggaaactgttcagaccactatttctgctcttcaatctgttctgcaagaagatttcaaggccagtgaaattgaggttggtgttgtgagaaaagaagatcccgtctttagagtgttaactactgaggaaatcgacgagcacttaacagccatcagtgagcgtgactgattagccacatgatacacagtccgttttctgttagaaatgtatgttttgctatcaagacttgcaaaagagatcccatttgattgttagttgctatcaatccttctgcatatgctgataaatgagtttctatttgtcgaatgtaacatttcatgggatcttcttagtttcaacaaaacgtttgaatccttctatcattatctatctacgatcttttgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0133N05-9n0MA/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0133N05.1" temp_strand="+" temp_description="C12HBa0133N05.1  AC216296.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0133N05 upload_account_name:italy">
        <position start="25783" stop="30766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26083" g_stop="26220" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26221" i_stop="26367" i_length="147">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26368" g_stop="26462" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="233" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26463" i_stop="27131" i_length="669">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27132" g_stop="27213" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="315" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27214" i_stop="27678" i_length="465">
            <donor d_prob="0.169" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27679" g_stop="27775" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="412" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27776" i_stop="28146" i_length="371">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.734" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28147" g_stop="28205" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="471" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28206" i_stop="28337" i_length="132">
            <donor d_prob="0.712" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28338" g_stop="28420" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="554" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="28421" i_stop="29173" i_length="753">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29174" g_stop="29269" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="650" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="29270" i_stop="29753" i_length="484">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="29754" g_stop="29813" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="651" r_stop="710" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="29814" i_stop="30156" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="30157" g_stop="30463" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="1017" r_length="307" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1020" polyA_stop="1049"/>
      <MATCH_line gen_id="C12HBa0133N05.1" gen_strand="+" ref_id="SGN-U315855" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1017</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0133N05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U315855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26083" e_stop="26220"/>
          <exon e_start="26368" e_stop="26462"/>
          <exon e_start="27132" e_stop="27213"/>
          <exon e_start="27679" e_stop="27775"/>
          <exon e_start="28147" e_stop="28205"/>
          <exon e_start="28338" e_stop="28420"/>
          <exon e_start="29174" e_stop="29269"/>
          <exon e_start="29754" e_stop="29813"/>
          <exon e_start="30157" e_stop="30463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATCAGTTCGACAAAAATTTTCAGATCGAACTGAGAAAATCAAACCGTAGAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCGGTAAGCATTTTCACTTTTTTTTTCTTAAAACTCGATTTGAATTTCGGAGTTAGTAAGTAATTTTCTCTAGTTTAATTGTAATTTTGTTCGATTTTTTGTCATTTGTGAAAAGTTTTAGGTTTTTTGTTATTGTTTTTGTGTGAACAGAATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCTGTAAGTGTCAATGTTTGGTGCAATTTGTAAATCATTAGTGTTTTTTTTCTGTTTGAGAGGATTGTAAGTAAAGTGAGAGATTTAGGGAATTTTAAGTGTTCTAGAGCTCCTAATTTTGCGATCAGTGACAAGGTTTTTAGTATTCCAGTGAAATAGGCTTGAATAAAGCAGAATAGATAGAGGACTCATAAAATGATAGAAGCTTAGATGTTTGATTCTGTACCTGTTGTTACTTGGAGTAAAGTCCCTGTAAGTTTATTTTTTGGAGGAAAGTCCCTGTAAGTTTAATTTTTGGTGCAATTTGTAACTTAACAGTGTTTTTGTTCTGTTAAGAAACTTGAACGTCAGTGCAAGGGAAAATGAGAGATTCAGGGAACCTCTAGTTTTCTAGAGCTCGTAATTTGCGATTAAAAGACTTATTCCAGTAAATTGGGCTTGAGTAAAGAAGAGCAGTCAATAGTCTTGGGGGATTATGAAACCAGACCTAGCTAATCTGAAGTTGAAGCTTAGTTGATCAATATAGTTATAGATTACTGATATAGCAAAGGTTGGGGGAATGTGAGAAGATGACAACATTGTTTTGAATATATCAGATAGTGTTGAAGACCCGTAATTTTGGAAATTTTGAATTGCATGGAGTTTGAAGTTTTGTGTATTTTGGTTGAGCAGGACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAGGTTTGTACTCTTTTATGGGGTTCAAGGAGTATGTGGCGAGTGATGGTTTTGATCTTCTTTTGATTAAATATCAGTTTGTAAAGATTCTTGACATATCTTATATCTATCTATTTTTTCTATGTAAGCAGAAGGAAACATATTGATTTATCTTCCTTTTTGTGATAATGCATATTTGTGACTAAAATGTGAAAACTTGCACTCTCAGTTTTCCAGTGGGGATGCCTACCAATCTCTTTTAGCATGGTTGCTTAGCCCCAAAAGAGCACACTTCACAACTGAGGCTATTGATTTAATTTTATGAACTAATTAGAGAACTTTGAGTAAAAAATTATCCACTTGCTGTATTTTAGGTTGATTTAGCTATGTATCATATGGCTTTCATCTGTGACTATGAGAATAGTATTGCATAGCTCCTTCCAGAGCCTTATGATACCGTAATTTGCTTTAACTTGTCCTCAATTTCAGCTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATGGTATTCCCTATGCTTCATAATATTTTTCTCTTTGTACTTGTCCAGTTAATTCTGCAGAGTGCCATCCTCAATGGTCTTTCTCTTGGTTACTTAAAAGGAAATGCAGATTGTGGGTAGGCTAGAAGCAGCTAATGATAGGTCATATCTTATATGTTTTCTCCATCAACTTCTAATTTCCAAAGCTATCAAATGTTTTAGTTTATTAGAGAAAGCTAGTTAAATAGCTTGAGAATATTATAAATGCTCTTAAATTGGCACTGTGTAAATACATGAGCTAGAATGCTGAACAGATAAAAGTACATATGCATGAGGAATATCCATCTCTAATTTATCAGTGAATTGTATAATGAGCTATAGAGAATGATTTTCAGGATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAGGTTTGTTGCTGGCCCCTTTGATCTTTGTGTAGCGTCTCCACTTTTCTTTTTGTTGGTGAGGAAGGAGGGGAATGCATTTTTAGGCCTACATTTTTATTAATTCCTGTTTTGTGTCCCTTTTTTGATGCATAGTTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTGGTCATAAGGTATTTGCTGAATTTGATGTTTTTCTCTGAATAAAAGCTGATCAAACTTTTCCTGCTTACAGATAGCCCCATTTGGTGCTTCCTTTATCTCTCAAATTTATAACATTGAGTGGCATCTTTCTTTTTTCATGCCAATGTACCATAGACTCGAGCTACACCAAATTTTTTCTAGCCATATTGTCCCACTGTGTTCAATCATATCCTAGCACCGCTTTGTAGCTTAGTTGTAAACAGCACATAAGCCAACCGACGATTCAAGTGGCACATGAAAACTTTAGTCCTAAAATTCCTACTATAATTCATTCTATTTAAAAGTATACAAAATTCTGTGATTTAAAGGATGATTTTACTTTGGATTTAAAAACCTGATTTAGTTTTTGTAAGGAAATTAATGATATTTTGCTATTATCACCCATCTTTTTCAATATGAAATGAAGCATGCATATGAAAGGATTTCTAGATGAGTTGAAAGGTAGATGCTAGACTTCATGATTCCCTGATTTGCTTTCTTAATATTTAATTGTAGTTTACACTGACCTTATAAGACCCAAATGTAGCAACACCGTGTCCTATTCCGTAAGTACTTGCAAATGGTGACTACTTCCTTTGCTTATGCTCCCACAATATCTTATAGTGGATGAGAGGACATTAAGGGCTTTTAAGTCATGTGTTAAGATTCTTTGGAAGTATTGATACTTTGCTGGCTTTTCTTCTTGTTTATGACTGAATGACATTTATCGACCTTGGTTGCAGGCTACAAGTGCCGGATCTAAAGAGCAAGAGGCAATTAACTTTTTGGAGAAGAAAATGAAAAATAACCCTGCGTTCTCCTATGAGGAAACTGTTCAGGTAAAAAGGGAAGGGTGTACCCAGATTTGGTTTTAGGCTTTTATTATCTTTCTGTTGTTCCTTTCGTCACTGTATATACTAGCAAAAGACTACACAATTTCCCATCTTATTGTGTAATTGACTACAGAAATTTTGATAGAAAATAGAACTTGAGATTTAGTTATTGTTAAATTTAAGACATTAAAGTTGATATAACCTCCTAATAAAATCTGGAAGTGGCTTTATCTCTCATATACCAGCACAGGTAAATGGATTCGCTAAAGCCTTAGAACTCTTAAGTCGGCTAGTGCTTACAGTTTTGCAGATGTTTGAAATAAATCGTACTAGTCTACATTTGATGAAGATCGAGCACAATTTTATATGTGAAGTTTTCAGTATATTCTATTCATGCAATCTTTTGGTTTCCATGTGTATTATGAGGTCTGATGTTAAAGTTCAGAGGATGCACCTTACTGTTGCTGATACATTATTTGTTGTTCTGCAGACCACTATTTCTGCTCTTCAATCTGTTCTGCAAGAAGATTTCAAGGCCAGTGAAATTGAGGTAATTTGTTTCTTTCCACATATTGTCTGCCATTGGTTATTGCAGTTATTATTGCCAGTGTTGATCACCTCTTGAGCGAAAGAGAAAAGGAAGGGGGGGGGGGGAGCACAGTGATTTTTACTATTCCTTGGTTTTTTTTCAAAAGAGTCGTTTCTTATTCTTGATTGGGGATTGATTACGTTATGAAATACTTGAGTTGCACCTGGGAACGTGACCATCCCACCACCACGTGATAAAAATGAGACCTTTATCACACGATTGGTTTGACCTTTATCGTCTTAGGTGGGATCGTAGTGCAATCATTTCCCTGCTTCGTTCCATAATGTCTTCTGGTCTTTGACAGGTTGGTGTTGTGAGAAAAGAAGATCCCGTCTTTAGAGTGTTAACTACTGAGGAAATCGACGAGCACTTAACAGCCATCAGTGAGCGTGACTGATTAGCCACATGATACACAGTCCGTTTTCTGTTAGAAATGTATGTTTTGCTATCAAGACTTGCAAAAGAGATCCCATTTGATTGTTAGTTGCTATCAATCCTTCTGCATATGCTGATAAATGAGTTTCTATTTGTCGAATGTAACATTTCATGGGATCTTCTTAGTTTCAACAAAACGTTTGAATCCTTCTATCATTATCTATCTACGATCTTTT</genome_strand>
        <mrna_strand>CTAAATCAGTTCGACAAAAATTTTCAGATCGAACTGAGAAAATCAAACCGTAGAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCG...................................................................................................................................................AATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATG...................................................................................................................................................................................................................................................................................................................................................................................GATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAG....................................................................................................................................TTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTGGTCATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACAAGTGCCGGATCTAAAGAGCAAGAGGCAATTAACTTTTTGGAGAAGAAAATGAAAAATAACCCTGCGTTCTCCTATGAGGAAACTGTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACTATTTCTGCTCTTCAATCTGTTCTGCAAGAAGATTTCAAGGCCAGTGAAATTGAG.......................................................................................................................................................................................................................................................................................................................................................GTTGGTGTTGTGAGAAAAGAAGATCCCGTCTTTAGAGTGTTAACTACTGAGGAAATCGACGAGCACTTAACAGCCATCAGTGAGCGTGACTGATTAGCCACATGATACACAGTCCGTTTTCTGTTAGAAATGTATGTTTTGCTATCAAGACTTGCAAAAGAGATCCCATTTGATTGTTAGTTGCTATCAATCCTTCTGCATATGCTGATAAATGAGTTTCTATTTGTCGAATGTAACATTTCATGGGATCTTCTTAGTTTCAACAAAACGTTTGAATCCTTCTATCATTATCTATCTACGATCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0133N05-9n0MA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322696" ref_strand="+" ref_description="SGN-U322696        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | ring-box protein-related, similar to ring-box protein 1 GI:4769004 from (Homo sapiens) | chr5:6956662-6958313 REVERSE | Aliases: F7C8.160, F7C8_160(evalue: 1e-60, score=229) genbank/nr: RING-box(evalue: 3e-62, score=240)">
      <seq>ataattttgaaaaatctgtgaactcttcgaagcttaaaaattcaatggcgtcaccggataccgatgtgccgatggttcccgccggcgagagttcaaccggagctggaacgtctaacaaaaagccgaagcgatttgagatcaaaaagtggaacgccgtttctctctgggcttgggatattgtggtagataattgtgccatctgtaggaatcacatcatggatctgtgtatcgagtgtcaagctaatcaagctagcgcaacaagtgaggaatgcacagttgcttggggtgtttgcaaccatgcattccacttccattgcattagcaggtggctcaagactcgtcaagtgtgtccacttgataacagcgagtgggagtttcagaagtatggtcactagaatttactgttggtgtacagtgaatgagaggagcttcaaaactatggtcattacagtttttctgtcatcgacgttgaaaagaacaattctgctgccttatgttcctttcgtttttgctctgcaaatatccaaagcaatgactcgaactatgtttttaattgtcgcatgtctgttttaggttgcctcaaaagaatgaaatgtgtttggagactaaccatttcttattcgaatttacatattttctttgttcttcagtgttcattactaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0133N05-9n0MA/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0133N05.1" temp_strand="-" temp_description="C12HBa0133N05.1  AC216296.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0133N05 upload_account_name:italy">
        <position start="41162" stop="37314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40862" g_stop="40689" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40688" i_stop="39847" i_length="842">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39846" g_stop="39796" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="225" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39795" i_stop="39674" i_length="122">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39673" g_stop="39614" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="285" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39613" i_stop="38074" i_length="1540">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38073" g_stop="38002" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="357" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38001" i_stop="37919" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.573" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37918" g_stop="37610" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="666" r_length="309" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0133N05.1" gen_strand="-" ref_id="SGN-U322696" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0133N05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U322696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40862" e_stop="40689"/>
          <exon e_start="39846" e_stop="39796"/>
          <exon e_start="39673" e_stop="39614"/>
          <exon e_start="38073" e_stop="38002"/>
          <exon e_start="37918" e_stop="37610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATTTTGAAAAATCTGTGAACTCTTCGAAGCTTAAAAATTCAATGGCGTCACCGGATACCGATGTGCCGATGGTTCCCGCCGGCGAGAGTTCAACCGGAGCTGGAACGTCTAACAAAAAGCCGAAGCGATTTGAGATCAAAAAGTGGAACGCCGTTTCTCTCTGGGCTTGGGGTGAATTTCTAACCCTAATTAATTCCATCGTATTTTATATACGTATTTATTGATGTAGATTTAACGATTTTATGCTGGATTTAAAGTAATGGAATCCGGTGATCTATTTAGATTTTAAATCAGTGATTGCGAAGTACTATTGCTAGTTTTTGCTGATGATGTTGTGAACTTAGTGCAAGTGTACGTTTAGGAACTTTATAGTTCGAATGTATGTATGTACGTTTTTCAAGGCAAAGGTAGTGAATATTCCTACGCTCGCTGCTGAAAAATTGGATGTATGATGGATGATTGTATGGAATTTGATTTGTAAACAGCAGCACTATGTGTATTGGCTTACGTGAAATTAGTAGTGAATGTCAGTCCAAAAATATGAAGTTTGTGTAATGTACTAATGGTAATATTGTTTTGTTACCTGAGCTTGTAGTTGATATCCGTGAATCGGAATTAGAAAGGAATATTGACTGGAAGATGCTTACAGCAATTTGAAGTTATTTGTATCTTCTTTTAGGAGGTGGTTTGATCATAGATGTTGACGATTTATCATCTATCTTTTAAGTTTGATCGTGTTCAATGTACTGTTCTCTTTGTAGTACTTATTGTTACTTCTATAAATAAAAATTGTTACATCTTATGTTACTATTTATGGTTTACATTCAAATATATTATGATGTATGAGCAGTTCTGTACTTCCATGATTTTGTGTTGCACATAATATACAATTATTGTATTTGTTTTGTTTGGTGTGAATTTGATTTTCTTCAACATGCTCATTGTCCGAATTGCGTTGGAGTGATCTTTCTGATTCTTTTTATCAATCTTGTGAATTGTGATTTTGGTTGCAGATATTGTGGTAGATAATTGTGCCATCTGTAGGAATCACATCATGGATCTGTGTGAGTTTTGGCTCTCCTTTCACTACTGTTCAATCAATGTTTCCTTTTCTTTGGTATGATATCATCATGAAATCTTTTATCCTCTTAATAGTTGATTTAAGTTGTATGCTAATTTTGATTAGGTATCGAGTGTCAAGCTAATCAAGCTAGCGCAACAAGTGAGGAATGCACAGTTGCTTGGGGTATGTAGCTCTTGTTATGTGTGAGAATATCGATTTAACATTTTAGTTTGTTAATTTGCGGTGAGTTCCAAATATTGTATGACTAGTATCTTATATCTCCTCCCACTGTATCTTGCCTTATGATCTATCAACCAACAGAATGACCCACAGACGCTCCTATGCATTGCAAATCCTCCTTATTAACCATGAAACTAAGTGAATAGGAAACTACCAATATCAGTATATTACTAAAGTAAGGATGAAGTAGGAAGTCATGTAGTTACTGGGGAAAAAACGAAGAAAGCTCCTTTTTTTTTCTGAGAAAGGAAAAAAAATATTTATGTTTCGTTTTGTTTTAGCAGTTTTTTTTTTGCCAGGAGTGTACTTTCTTTTGATGCTTAGAATAATAATGAAAATGTTCTGTTTCTTCTTTTGATCCTCAATACAAAACAAAAAACCTTTTTGTGGTCACGTTTTCGAGAAAACCCCTCTTTTCTTTTTTGAGAATATTGCTTTCCTCGGATTTTGTTATTGGGGATGGTCATGTTGAAGGTTGCTGAAGAAATAGATAACTTGGAGCCATTCCATTGTGTATGAAGTACCGTAGTACTGAGTTAGCACTTTTCTGGAGCATAGGATTACAAGCTTGAGAAATTGTTCTTTCCATTCTTGAAATGAGAGTGCTCTTTGTATGAGTACGGTGTTCTCGTGCTGTATTTTCTAATTTAAGTCAGTGATTATGTCTGTTTTAAATTGGTTTTACTCGTTAGTTATCACCATATGGTAGGAAAATAACCTCCCTCCTGCAATTTGGTCAAAATTGAAATTGTGGTAGCTTGAGATATGCAAGCCATGTGTTGATGGTATTGAACTTACATCATCTAGCTGGTCACCCACTCGTATGATTCCATGTTAACAACCATGTTAAACTTTTCCTTGAGTTTCGGCGACATACCAGATATAATTGTAGTAAAAAAACCAAAATATTAATTCTGCAATTAGATTATTGTGTTATAGTGAAGTCTGGTGGCTGGAATGTCTTCTATAATTGTGTTATAGTGTTGCTACTATTTGTAGAATAAGATGTTAATCAGTAGAGGTGCAAACTGATAAGGCATTAGTCACAAAAAGTTAGAGGATCTTCATGCCTCTCCTCAAGACTTTTGTTGTAGCTAGTGTTAAGTTTATATTGTGGTAAATGTTACATTGGATTTGCTCCAACTCTCGTGCACATGTCTTTCAATCTTTGACAATTGGTAATTGTCATTACTTGAGCTTGTTATTTGCCTTCTAAGCTGGTATCAGATTTGTGCCCATAAAATATTGTGGCATCCTTCCGCAAGAATTCTGGAAGATAACAAATAAGATACTCTTGACAAGGTACAGAGTGTCAAATAGTCCTCTGTGAAAAATCTACATTTTCTATTAACTGTATGAAATTAATGTTGGCGTAAACGTTACTCTACACTCACTAAACCTGTTTACGCCATTTTGGATATGGATTGCCATCTGTTATTCATCGGAAGGTCATTTTTTTTGCCATAACTGTTGATCATTGCAGGTGTTTGCAACCATGCATTCCACTTCCATTGCATTAGCAGGTGGCTCAAGACTCGTCAAGTGTGTCCACTTGGTAAGTTGTATATATATTGCCGTCTCTGCATACATAAGCTGTCATTGTACATTACCTGCTAATTAAGTACAACACACTTTCAGATAACAGCGAGTGGGAGTTTCAGAAGTATGGTCACTAGAATTTACTGTTGGTGTACAGTGAATGAGAGGAGCTTCAAAACTATGGTCATTACAGTTTTTCTGTCATCGACGTTGAAAAGAACAATTCTGCTGCCTTATGTTCCTTTCGTTTTTGCTCTGCAAATATCCAAAGCAATGACTCGAACTATGTTTTTAATTGTCGCATGTCTGTTTTAGGTTGCCTCAAAAGAATGAAATGTGTTTGGAGACTAACCATTTCTTATTCGAATTTACATATTTTCTTTGTTCTTCAGTGTTCATTACTATTTG</genome_strand>
        <mrna_strand>ATAATTTTGAAAAATCTGTGAACTCTTCGAAGCTTAAAAATTCAATGGCGTCACCGGATACCGATGTGCCGATGGTTCCCGCCGGCGAGAGTTCAACCGGAGCTGGAACGTCTAACAAAAAGCCGAAGCGATTTGAGATCAAAAAGTGGAACGCCGTTTCTCTCTGGGCTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGTGGTAGATAATTGTGCCATCTGTAGGAATCACATCATGGATCTGT..........................................................................................................................GTATCGAGTGTCAAGCTAATCAAGCTAGCGCAACAAGTGAGGAATGCACAGTTGCTTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTGCAACCATGCATTCCACTTCCATTGCATTAGCAGGTGGCTCAAGACTCGTCAAGTGTGTCCACTTG...................................................................................ATAACAGCGAGTGGGAGTTTCAGAAGTATGGTCACTAGAATTTACTGTTGGTGTACAGTGAATGAGAGGAGCTTCAAAACTATGGTCATTACAGTTTTTCTGTCATCGACGTTGAAAAGAACAATTCTGCTGCCTTATGTTCCTTTCGTTTTTGCTCTGCAAATATCCAAAGCAATGACTCGAACTATGTTTTTAATTGTCGCATGTCTGTTTTAGGTTGCCTCAAAAGAATGAAATGTGTTTGGAGACTAACCATTTCTTATTCGAATTTACATATTTTCTTTGTTCTTCAGTGTTCATTACTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0133N05-9n0MA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337659" ref_strand="+" ref_description="SGN-U337659        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | ring-box protein-related, similar to ring-box protein 1 GI:4769004 from (Homo sapiens) | chr5:6956662-6958313 REVERSE | Aliases: F7C8.160, F7C8_160(evalue: 2e-35, score=147) genbank/nr: RING-box(evalue: 4e-37, score=158)">
      <seq>cgatatagttttgaaaaatctgtgaactcttcgaagcttaaccttcaatggcgtcaccggataccgatgtgccgatggttcccgccggcgagagttcaaccggagctggaacgtctaacaaaaagccgaagcgatttgagatcaaaaagtggaacgccgtttctctctgggcttgggatattgtggtagataattgtgccatctgtaggaatcacatcatggatctgtgtatcgagtgtcaagctaatcaagctagcgcaacaagtgaggaatgcacagttgcttggggtggctcaagactcgtcaagtgtgtccacttgataacagcgagtgggagtttcagaagtatggtcactagaatttactgttggtgtacagtgaatgagaggagcttcaaaactatggtcattacagtttttctgtcatcgacgttgaaaagaacaattctgctgccttatgttcctttcgtttttgctctgcaaatatccaaagcaatgactcgaactatgtttttaattgtcgcatgtctgttttaggttgcctcaaaagaatgaaatgtgtttggagactaaccatttcttattcgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0133N05-9n0MA/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0133N05.1" temp_strand="-" temp_description="C12HBa0133N05.1  AC216296.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0133N05 upload_account_name:italy">
        <position start="41166" stop="37351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40866" g_stop="40689" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40688" i_stop="39847" i_length="842">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39846" g_stop="39796" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="228" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39795" i_stop="39674" i_length="122">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39673" g_stop="39614" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="288" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39613" i_stop="38034" i_length="1580">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.066" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38033" g_stop="38002" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="320" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38001" i_stop="37919" i_length="83">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.573" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37918" g_stop="37652" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="587" r_length="267" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="588" polyA_stop="601"/>
      <MATCH_line gen_id="C12HBa0133N05.1" gen_strand="-" ref_id="SGN-U337659" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0133N05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U337659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40866" e_stop="40689"/>
          <exon e_start="39846" e_stop="39796"/>
          <exon e_start="39673" e_stop="39614"/>
          <exon e_start="38033" e_stop="38002"/>
          <exon e_start="37918" e_stop="37652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAATAATTTTGAAAAATCTGTGAACTCTTCGAAGCTTAAAAATTCAATGGCGTCACCGGATACCGATGTGCCGATGGTTCCCGCCGGCGAGAGTTCAACCGGAGCTGGAACGTCTAACAAAAAGCCGAAGCGATTTGAGATCAAAAAGTGGAACGCCGTTTCTCTCTGGGCTTGGGGTGAATTTCTAACCCTAATTAATTCCATCGTATTTTATATACGTATTTATTGATGTAGATTTAACGATTTTATGCTGGATTTAAAGTAATGGAATCCGGTGATCTATTTAGATTTTAAATCAGTGATTGCGAAGTACTATTGCTAGTTTTTGCTGATGATGTTGTGAACTTAGTGCAAGTGTACGTTTAGGAACTTTATAGTTCGAATGTATGTATGTACGTTTTTCAAGGCAAAGGTAGTGAATATTCCTACGCTCGCTGCTGAAAAATTGGATGTATGATGGATGATTGTATGGAATTTGATTTGTAAACAGCAGCACTATGTGTATTGGCTTACGTGAAATTAGTAGTGAATGTCAGTCCAAAAATATGAAGTTTGTGTAATGTACTAATGGTAATATTGTTTTGTTACCTGAGCTTGTAGTTGATATCCGTGAATCGGAATTAGAAAGGAATATTGACTGGAAGATGCTTACAGCAATTTGAAGTTATTTGTATCTTCTTTTAGGAGGTGGTTTGATCATAGATGTTGACGATTTATCATCTATCTTTTAAGTTTGATCGTGTTCAATGTACTGTTCTCTTTGTAGTACTTATTGTTACTTCTATAAATAAAAATTGTTACATCTTATGTTACTATTTATGGTTTACATTCAAATATATTATGATGTATGAGCAGTTCTGTACTTCCATGATTTTGTGTTGCACATAATATACAATTATTGTATTTGTTTTGTTTGGTGTGAATTTGATTTTCTTCAACATGCTCATTGTCCGAATTGCGTTGGAGTGATCTTTCTGATTCTTTTTATCAATCTTGTGAATTGTGATTTTGGTTGCAGATATTGTGGTAGATAATTGTGCCATCTGTAGGAATCACATCATGGATCTGTGTGAGTTTTGGCTCTCCTTTCACTACTGTTCAATCAATGTTTCCTTTTCTTTGGTATGATATCATCATGAAATCTTTTATCCTCTTAATAGTTGATTTAAGTTGTATGCTAATTTTGATTAGGTATCGAGTGTCAAGCTAATCAAGCTAGCGCAACAAGTGAGGAATGCACAGTTGCTTGGGGTATGTAGCTCTTGTTATGTGTGAGAATATCGATTTAACATTTTAGTTTGTTAATTTGCGGTGAGTTCCAAATATTGTATGACTAGTATCTTATATCTCCTCCCACTGTATCTTGCCTTATGATCTATCAACCAACAGAATGACCCACAGACGCTCCTATGCATTGCAAATCCTCCTTATTAACCATGAAACTAAGTGAATAGGAAACTACCAATATCAGTATATTACTAAAGTAAGGATGAAGTAGGAAGTCATGTAGTTACTGGGGAAAAAACGAAGAAAGCTCCTTTTTTTTTCTGAGAAAGGAAAAAAAATATTTATGTTTCGTTTTGTTTTAGCAGTTTTTTTTTTGCCAGGAGTGTACTTTCTTTTGATGCTTAGAATAATAATGAAAATGTTCTGTTTCTTCTTTTGATCCTCAATACAAAACAAAAAACCTTTTTGTGGTCACGTTTTCGAGAAAACCCCTCTTTTCTTTTTTGAGAATATTGCTTTCCTCGGATTTTGTTATTGGGGATGGTCATGTTGAAGGTTGCTGAAGAAATAGATAACTTGGAGCCATTCCATTGTGTATGAAGTACCGTAGTACTGAGTTAGCACTTTTCTGGAGCATAGGATTACAAGCTTGAGAAATTGTTCTTTCCATTCTTGAAATGAGAGTGCTCTTTGTATGAGTACGGTGTTCTCGTGCTGTATTTTCTAATTTAAGTCAGTGATTATGTCTGTTTTAAATTGGTTTTACTCGTTAGTTATCACCATATGGTAGGAAAATAACCTCCCTCCTGCAATTTGGTCAAAATTGAAATTGTGGTAGCTTGAGATATGCAAGCCATGTGTTGATGGTATTGAACTTACATCATCTAGCTGGTCACCCACTCGTATGATTCCATGTTAACAACCATGTTAAACTTTTCCTTGAGTTTCGGCGACATACCAGATATAATTGTAGTAAAAAAACCAAAATATTAATTCTGCAATTAGATTATTGTGTTATAGTGAAGTCTGGTGGCTGGAATGTCTTCTATAATTGTGTTATAGTGTTGCTACTATTTGTAGAATAAGATGTTAATCAGTAGAGGTGCAAACTGATAAGGCATTAGTCACAAAAAGTTAGAGGATCTTCATGCCTCTCCTCAAGACTTTTGTTGTAGCTAGTGTTAAGTTTATATTGTGGTAAATGTTACATTGGATTTGCTCCAACTCTCGTGCACATGTCTTTCAATCTTTGACAATTGGTAATTGTCATTACTTGAGCTTGTTATTTGCCTTCTAAGCTGGTATCAGATTTGTGCCCATAAAATATTGTGGCATCCTTCCGCAAGAATTCTGGAAGATAACAAATAAGATACTCTTGACAAGGTACAGAGTGTCAAATAGTCCTCTGTGAAAAATCTACATTTTCTATTAACTGTATGAAATTAATGTTGGCGTAAACGTTACTCTACACTCACTAAACCTGTTTACGCCATTTTGGATATGGATTGCCATCTGTTATTCATCGGAAGGTCATTTTTTTTGCCATAACTGTTGATCATTGCAGGTGTTTGCAACCATGCATTCCACTTCCATTGCATTAGCAGGTGGCTCAAGACTCGTCAAGTGTGTCCACTTGGTAAGTTGTATATATATTGCCGTCTCTGCATACATAAGCTGTCATTGTACATTACCTGCTAATTAAGTACAACACACTTTCAGATAACAGCGAGTGGGAGTTTCAGAAGTATGGTCACTAGAATTTACTGTTGGTGTACAGTGAATGAGAGGAGCTTCAAAACTATGGTCATTACAGTTTTTCTGTCATCGACGTTGAAAAGAACAATTCTGCTGCCTTATGTTCCTTTCGTTTTTGCTCTGCAAATATCCAAAGCAATGACTCGAACTATGTTTTTAATTGTCGCATGTCTGTTTTAGGTTGCCTCAAAAGAATGAAATGTGTTTGGAGACTAACCATTTCTTATTCGA</genome_strand>
        <mrna_strand>CGATATAGTTTTGAAAAATCTGTGAACTCTTCGAAGCTT-AACCTTCAATGGCGTCACCGGATACCGATGTGCCGATGGTTCCCGCCGGCGAGAGTTCAACCGGAGCTGGAACGTCTAACAAAAAGCCGAAGCGATTTGAGATCAAAAAGTGGAACGCCGTTTCTCTCTGGGCTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGTGGTAGATAATTGTGCCATCTGTAGGAATCACATCATGGATCTGT..........................................................................................................................GTATCGAGTGTCAAGCTAATCAAGCTAGCGCAACAAGTGAGGAATGCACAGTTGCTTGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTCAAGACTCGTCAAGTGTGTCCACTTG...................................................................................ATAACAGCGAGTGGGAGTTTCAGAAGTATGGTCACTAGAATTTACTGTTGGTGTACAGTGAATGAGAGGAGCTTCAAAACTATGGTCATTACAGTTTTTCTGTCATCGACGTTGAAAAGAACAATTCTGCTGCCTTATGTTCCTTTCGTTTTTGCTCTGCAAATATCCAAAGCAATGACTCGAACTATGTTTTTAATTGTCGCATGTCTGTTTTAGGTTGCCTCAAAAGAATGAAATGTGTTTGGAGACTAACCATTTCTTATTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0133N05-9n0MA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333141" ref_strand="+" ref_description="SGN-U333141        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | O-methyltransferase family 2 protein, similar to caffeic acid O-methyltransferase, Pinus taeda, gb:U39301 | chr4:16730765-16732816 REVERSE | Aliases: T12J5.30, T12J5_30(evalue: 2e-61, score=232) genbank/nr: O-methyltransferase,(evalue: 6e-67, score=256)">
      <seq>ttagtgcgcgtatttcatcaaaggacaatagtacgccctcctttgatgcagcgcatggaaaggatatctggaagtacgcggaagctgactctggacttagtaaccttctgaataacgcaatggcgtgcgatgctaaagttgcagtatcagcgattatcgacggttgcccggagatattcgagggggtgaacacaatggttgatgttggtggtggtgatggaacaacactaagattattggtggaggcttttccttggattaatgggattaatttagatcttcctcatgttgcttctgttgcacctcatgctattggtgttgtacattttggaggtgacatgtttaattatgtccccaaagctgatgctgccttcctaatgtgggttttacatgattggggagatgaagaatgtatacaaatattaacaaagtgtagagaagcaattccaaaagacaaagggaaagtgataatattggaagcaataattggtgaaaaagaagaaaataatattattagaggatcaaataatgagaagctcaaggatgttggtttaatgttggatatggtgatgatggctcacacaagcaatggaaaagagagaacatctaaagaatgggcttatgttttgaatgaagctggatttggtagacacactattagtcacattaatgctgttcaatctgttattcaagcttatccttcttgatttttatcgtgttcggagacggatttagtgtgtaagttatgtcgatttatgtttgaggtttttaataagcattggatacgtatgttatattttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0133N05-9n0MA/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0133N05.1" temp_strand="+" temp_description="C12HBa0133N05.1  AC216296.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0133N05 upload_account_name:italy">
        <position start="49437" stop="51924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49737" g_stop="50116" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50117" i_stop="51192" i_length="1076">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.828" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51193" g_stop="51624" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="811" r_length="431" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0133N05.1" gen_strand="+" ref_id="SGN-U333141" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0133N05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U333141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49737" e_stop="50116"/>
          <exon e_start="51193" e_stop="51624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTGCGCGTATTTCATCAAAGGACAATAGTACGCCCTCCTTTGATGCAGCGCATGGAAAGGATATCTGGAAGTACGCGGAAGCTGACTCTGGACTTAGTAACCTCCTGAATAACGCAATGGCGTGCGATGCTAAAGTTGCAGTATCAGCGATTATCGACGGTTGCCCGGAGATATTCGAGGGGGTGAACACAATGGTTGATGTTGGTGGTGGTGATGGAACAACACTAAGATTATTGGTGGAGGCTTTTCCTTGGATTAATGGGATTAATTTAGATCTTCCTCATGTTGCTTCTGTTGCACCTCATGCTATTGGTGTTGTACATTTTGGAGGTGACATGTTTAATTATGTCCCCAAAGCTGATGCTGCCTTCCTAATGGTAACTAACTACTAATCCCGTCTCATATTAGATGGACATTTTATTAAAAATATTTATTTTATATTATTCAATCTTTTACTAATTAATCATAATAGATTTTTATTTTATTTTACCCCTATAATTAATATAATTTTTGAAAAATTTAAACAAATTTTGAAGATTCAATTTTTTTTTTCAAAAGGCTAATTAATATAACAAATGATTAATAATAAAATTGATAAATTTATTAATGATTTCTTAAATACATTATAAAATTAAAAAAAATTCCCATCTAATATGGGTGGGAGGGAATAAATATTAATAGTAGTCATTTTAATGGATTCAATTTGTTTTAATTAAAATATTTGATACTTTAATTATGATGGGAGTTAGATTTCTTATATAGTAATTTATGCTATGAAATGACTCAAAAAGTTATCTTTTTATTTGTTTTGTTTTAATAAAAGTCATTCATGATTTAACCATTATCCCATAAAATAATTTCTACCTAAAAGTACTAGAAAATAATATGGAATGGCCCTTATGTTTGAGAGTAGGTCTAAAGTTGTCCATTGATATATTTTATATTATCTCTATTTATGAATTTTCGAGGGATATTTCATTAAAAAATAGCTTATCGTTAAGATTTTCAACAAAAATCATATTGAAAACATTATTAACGAATCAATTTCAAATGGATTTCAGTAATTTTTACTTTAAGTAGTGTTTAACGAATTTCCTATGAAATATCCGTTAAAAACATTTTCAACGAAATTTGCTTTTAGTTAAATAGTATTTATGCATAACTTCATGTATATGTGTTAGAAGTTATTATTGTATGGGTGAGAAACCATCTCTATTTCTATTAACCTTACACGAATTTTCGATGAAAATCTCGTCAAGATTTTTTATTAAAACAACAAACAACAATATACATACAACCTTACTCATATCTCTTGTAGGTAGAATGACTATTTTCAAAAGGCGTTTGACTCAGATTATTGTACCTTTTTTTTTTAAGAGTGTTTTCTTATATTCAATTTTATTTTTAATTTTCATAACCTCATGTATATTGGTGTATATGTTATGTATATTAGTGGGTTTTACATGATTGGGGAGATGAAGAATGTATACAAATATTAACAAAGTGTAGAGAAGCAATTCCAAAAGACAAAGGGAAAGTGATAATATTGGAAGCAATAATTGGTGAAAAAGAAGAAAATAATATTATTAGAGGATCAAATAATGAGAAGCTCAAGGATGTTGGTTTAATGTTGGATATGGTGATGATGGCTCACACAAGCAATGGAAAAGAGAGAACATCTAAAGAATGGGCTTATGTTTTGAATGAAGCTGGATTTGGTAGACACACTATTAGTCACATTAATGCTGTTCAATCTGTTATTCAAGCTTATCCTTCTTGATTTTTATCGTGTTCGGAGACGGATTTAGTGTGTAAGTTATGTCGATTTATGTTTGAGGTTTTTAATAAGCATTGGATACGTATGTTATATTTTTGAAATTACTAA</genome_strand>
        <mrna_strand>TTAGTGCGCGTATTTCATCAAAGGACAATAGTACGCCCTCCTTTGATGCAGCGCATGGAAAGGATATCTGGAAGTACGCGGAAGCTGACTCTGGACTTAGTAACCTTCTGAATAACGCAATGGCGTGCGATGCTAAAGTTGCAGTATCAGCGATTATCGACGGTTGCCCGGAGATATTCGAGGGGGTGAACACAATGGTTGATGTTGGTGGTGGTGATGGAACAACACTAAGATTATTGGTGGAGGCTTTTCCTTGGATTAATGGGATTAATTTAGATCTTCCTCATGTTGCTTCTGTTGCACCTCATGCTATTGGTGTTGTACATTTTGGAGGTGACATGTTTAATTATGTCCCCAAAGCTGATGCTGCCTTCCTAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGTTTTACATGATTGGGGAGATGAAGAATGTATACAAATATTAACAAAGTGTAGAGAAGCAATTCCAAAAGACAAAGGGAAAGTGATAATATTGGAAGCAATAATTGGTGAAAAAGAAGAAAATAATATTATTAGAGGATCAAATAATGAGAAGCTCAAGGATGTTGGTTTAATGTTGGATATGGTGATGATGGCTCACACAAGCAATGGAAAAGAGAGAACATCTAAAGAATGGGCTTATGTTTTGAATGAAGCTGGATTTGGTAGACACACTATTAGTCACATTAATGCTGTTCAATCTGTTATTCAAGCTTATCCTTCTTGATTTTTATCGTGTTCGGAGACGGATTTAGTGTGTAAGTTATGTCGATTTATGTTTGAGGTTTTTAATAAGCATTGGATACGTATGTTATA-TTTTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0133N05-9n0MA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326406" ref_strand="+" ref_description="SGN-U326406        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, similar to expressed protein [Arabidopsis thaliana] (TAIR:At5g20580.1); similar to expressed protein [Arabidopsis thaliana] (TAIR:At5g20580.2); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:XP_468082.1) | chr2:2332575-2336108 FORWARD | Aliases: None(evalue: 1e-65, score=196) genbank/nr: unknown(evalue: 8e-64, score=196)">
      <seq>ttttcgaagtaattttttttgaagaaactgtaaatattgtgaaggagaaaaatcgttcgagctagacgaagaagacgaagatcaaaagatgtctacggaaatacattcttcttcaatttcagaatcaccagatggaaacagtctgtttgtggacgtactgcatgaagcacctctatccggtcataggaagcctacgagccttattgggagtattttctactgtttcttattggctttgctgttttggcggtgggagctacatggatatttcaccctatagaaagattagtgttcccacttctttgcagttgtaatgctgccctccttcttgtcacaggcatttttcagcaatatttggtctatcaagtcaagaaaatacggttacaggaactgctgcgatgctgcttgtcatggtttgggacccacatattggcatcctctctatgttgacactattcaggtaccaggatggtggtcgcctgtcagatcagcagatggcgttgttgcaatatcagcaagaaaatatacactttttgggtgaggagattcttagactgcaagaaaccttgagcaaatacgaaagatgtaatgatgggagtgcacctcaggtagatcttgctcacctgttggcaactcgagatcaagagttacgtactctcaaagctgagatgaatcaattacaatctgagcttaggcttgctcgatctattgtagaggagaaggatgctgagattcagcgtattcgcaatgcaaacaatcagtatgtagaagaaaacgagaggctcagagctattttgggagaatggagcagccgagcagctaagtagtacttcttatttatggttcattgctataatgctgtcgtttccttttcctctattacaccaaacgtcttttttttcttggctggataaaaggctcgaacgtgctttggagctggaaaggatgtcaaacttggaactgcagaaaaatataaccacactgaagattcaaatgtgtgaatagttcagcctgactaactgctagatcttcttttgctgtgtacaatagatccttgtggttctgctcttcctcggaccctgtgcatagcaggagctttcatgcactaggctgcccgtttttagatcttttgcaataccattgttggaaaacctaatggttccatctgcacatgtacagattaagctcaaacaattgtttgctcatctttcagactttaagctttgtatagtttttctccactactatttatctcacatattttcttcctattttaggtttcttttggatgaatctgttctaacaatttgcttttactgtaaattagtcattttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0133N05-9n0MA/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0133N05.1" temp_strand="+" temp_description="C12HBa0133N05.1  AC216296.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0133N05 upload_account_name:italy">
        <position start="52235" stop="64564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52535" g_stop="52678" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52679" i_stop="55557" i_length="2879">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55558" g_stop="55645" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="232" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55646" i_stop="55737" i_length="92">
            <donor d_prob="0.168" d_score="1.00"/>
            <acceptor a_prob="0.723" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55738" g_stop="55842" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="337" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55843" i_stop="55997" i_length="155">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.650" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55998" g_stop="56047" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="387" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56048" i_stop="58676" i_length="2629">
            <donor d_prob="0.879" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58677" g_stop="58749" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="460" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58750" i_stop="61855" i_length="3106">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="61856" g_stop="61940" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="545" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="61941" i_stop="62234" i_length="294">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62235" g_stop="62297" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="608" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="62298" i_stop="62843" i_length="546">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="62844" g_stop="62903" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="668" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="62904" i_stop="63086" i_length="183">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="63087" g_stop="63179" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="761" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="63180" i_stop="63690" i_length="511">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="63691" g_stop="64276" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="762" r_stop="1347" r_length="586" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0133N05.1" gen_strand="+" ref_id="SGN-U326406" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>1347</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0133N05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52535" e_stop="52678"/>
          <exon e_start="55558" e_stop="55645"/>
          <exon e_start="55738" e_stop="55842"/>
          <exon e_start="55998" e_stop="56047"/>
          <exon e_start="58677" e_stop="58749"/>
          <exon e_start="61856" e_stop="61940"/>
          <exon e_start="62235" e_stop="62297"/>
          <exon e_start="62844" e_stop="62903"/>
          <exon e_start="63087" e_stop="63179"/>
          <exon e_start="63691" e_stop="64276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCGAAGTAATTTTTTTTGAAGAAACTGTAAATATTGTGAAGGAGAAAAATCGTTCGAGCTAGACGAAGAAGACGAAGATCAAAAGATGTCTACGGAAATACATTCTTCTTCAATTTCAGAATCACCAGATGGAAACAGTCTGTAAGTGTAAAAAAAATCCTTCAATTTGTTATACTGATTGTAATTTGTACTTAGAATTTCAATTATATCGTATTTTGTTAATTATCTGCTGAACAATGCTTTATAATTTTGTAATTCATCATTTTCTAGCTCAACAAGCTAAAAAATCTGTAAAATACTTGTATTTTTTTGGGATCATATTCGTTTAAATGAAATTAGGGATTTGAACTCGTTGAAAGGGGGACTGTACTTCGAATTTGGGAAGTGAAAGGGCGTCTTTGCGATAGTTTTCCAATTTTCAAGGGGTGCCTGTTGTGTGTCAGTTGGCACTCAACAACAATTACAATAGGGTCTGGGGAGGGTACTGTGTGTGTAAATTTTATCGCTACCTCGTGGAGATAGAGAGGTAACACATAACTAGGCAGTTCTCAAAGACAGTATAGAGGTAGAACAAGGCATAACAAATAATTGAGGAAGTGTAGTAGACCATACGTAGTAGACTAATGTGATAAATGAATACGAGAAACAACAAGTAGTAGCAGAAATCGAAGAAGAAGAAACTATGAGACCTTCAATAGAATAGTCTCCTACCTTTTCTAAGCCACATTTCCACTCAAAAAATTAGGTAGCTTCTGGCATATTAAAGAACTTTTTCATAGAAATCACATTGCCCATAATCTTCTTAAATGGTAGGAAAACTCGTATATAATTCTATTCAAGTGCAATGGCTACTTACTGACTGCTCGATACGGAGTAAACTCATGTAAACCTTTTTTTTTTTAAAAAATCAGAAGAAGAGAAATACTACTACTTATCTATGGAAAAGAAAATATCTAAGACAGAGTAACTTTCAATTGCAAGCATCACAATCATATAACTTCAGCCGACAAGTTCCCTGCTTATCAGATCCATATTTTACCAAGCACTACAATTCCACTGGCATGTAACACAGTTTGCAACACCAGAATGTTTACATTTCCCAAGTCCACAAAATGACGCAGTTCTCTTCCAAAGTTTTGATCTTTTTACTCCCAAGTTAATTCGAGAGATAATGGACAAAAAATACTTGAACTATCACTTTTTTGGGAGTTTCAAACCTCAACAATCGGTTGTTCCCTTGATCTTTTCCTTCCTGAACTGTCACCGTCTATGTATAATAAGTGAAATAGTAATGGTTTTTATGTTGAATGGACATTTTCCACGGTGAGTTCCACCTAATAAGCTAGTTCTTTGGATTACGCTCTCCTGTTCAGTCTACAAAAATTGATATCAGGACTGGTCAATTAATGCTTGAGACTGAGACTCGAAGTGATGGCCTAATAGACCACAAAGAGTGGGCCTCGATCTTGCCCTACTAGTAGAGCGCTAGGAGTGGTAGCCTAGATCCAAGTGGGGTGCCAGTTGTGACCAACTGAGTACAATAAGGTTAAAAAGAATGAGATGCCAGTCATGACCAACTTGGATAGAGGGGTGCTAAGAGTGCCAGCCTGGATTAAAAAATAGTGGTGCGAGTCGTGACCAACAAAGTTGTTGGTCCTCAAGCAAGGACAATTGTCGAGTGTCAATTGTTCCTGGTTGATGAAACAGAAATATAGTAATGAATTTATAGGCTCAATGAGCTCTCCCATCTAATAAGTAGTCTTTTGGGTTGGGTTCTCCGGTTCAGACTATAACATTGTCCATAAGGGATTCCTAGTGGTTGAAGAGATTGAGTAACAACTATGGGAGTTGGGACCAAGGCTGGAATCCTTGCAGATGCAACACTAGGTGAACTCCTCCGGCTAATTGAACCTTGATAGGTAGAGTTACCCAATACTTGTGTTGATTGGAGATAACATCTACCTATTAAATTAATCAAGGTGTGCTCATGTTGATTCGAAAGCAATTTGCAAAGGTGCTATTCTACTTCGTGGTCTACTAACAACAACAACAATATACCCAGTGTAATTTCATAAGTTGGGTATGGGGAGGGTGGTGTGTATGCAACCTCACCCTACCTTATGAAGGTAGAGAGGCTCGTGGTCAACTGACAAAATATTACTCCTTCCATTTCAATTTATATGGCAATATTTGATAGGAACAAAGTTCAAGAAAAACTAAAAACTTTTGGAACTTGTGGTTTAAAACCATACACATTTGTGTGACGATAAATTATCTCATTAACAACAACAACATATCGTCATACCCAGTGCAGTCTCAACAAGTGGGATGACTATAAATCATCTCATTTTGGGTAAAGTGTGAAATTCAAAGTTAAATTGGCTATACATACAGAAAGTGTTTTTTTTTTCTGTTTTAAAAAAAAACATACAGAAAGTTGTCATTCTTTCGGGGACAAACTTAAAAATAAAGTATATCACATAAATGAGAAATATGCCATATTTAATGAGACAGAGAATTGGTGATCTCTATTTTCTTCCCATGTTAAATCCTCCAATACTACTTTGTTGGGATGTTGCCAACTAGTTATGTGCAACATTGGCTTGGAATGGAATGGTCTAAATAGTATTGCATGGATACAGAGGACTCATATACTCCATCTTGACAATTTCGGATTGAGGTATAGTTGATTGAGTTTCTTCTATGAGCTCCTTCCAAAGATTAATGACTTTCTTGTAATTCTCTAAGTGACTATACTCTAATGATCTTTGAAGTCTGAACCTAGACACTAAGCGGCTGTAATATATGAAAGTATCCCTAAGGAATCGAATGAATTAAAGAAATAGAGGGGTGAATTGGGATGGTATACAAGTTGCGTTGTAGGCAAAGTAGAGATGTCTCTTGGGAATCATATGACTATTCAAGTTAAATGATGATACTAAACAATAGGTTATTCCTGTTTTGACTTAATACTTCAGCTTCTCTTTCTAATTGCTGTTATGCTGCTTGTTCAACTGTAGGTTTGTGGACGTACTGCATGAAGCACCTCTATCCGGTCATAGGAAGCCTACGAGCCTTATTGGGAGTATTTTCTACTGTTTCTTATTGGCAAGTATCAGTTCATGAATTCTTGGCGGTTGTGACAAAGATGCAAATTTAGCCACCTTCTAGGTGAACTAATTATGACAAATTGTAGGCAGGCTTTGCTGTTTTGGCGGTGGGAGCTACATGGATATTTCACCCTATAGAAAGATTAGTGTTCCCACTTCTTTGCAGTTGTAATGCTGCCCTCCTTCTTGTCACAGGTGCGCTATGCAGTCACATACTCTGTCTTCTTTCGTATGCTTTCAGCAAATCATAAGATTTAAATCTCCTCCGTTTCATTGTATTTTTCCAGCATGTGACTTCCCTCTATAGCAGTATAGCTCTAACTTTTCCAGCATGTGACTTCTCTCTGTAGGCATTTTTCAGCAATATTTGGTCTATCAAGTCAAGAAAATACGGTTACAGGTCAGTGTTTTTACTATATTTCACGATGATAATATGTATGGAGCCCAACTAGCTTGAGATCAAGGTTTTGTTGTTGAAATGGCCATTAGTGATAAATATTATTCTTACAATATGTAGCTTGAGATGAAATTTATTGGGGAAAAGAGTTAAAAACAACACTGGAAGGACAATTTCAAGCTCTCTTAGCTATAAATGTAGGGATAGCAATGGGGCGGGGCAGCGGCGGGACGGGTTGAGCTTAACCTGCAAATTTTTTAATCCGCCCGGCATAACAACTTTTTTCATTTCACCCCGCCACATGCTTTTTTAGTATTTTCTTTTTCTAGTTAAGTTTGATACTAAAAGTAATATTCATAGAGATAAATTTATTTTTCATTAAATTGTATTAATTTAATAGATAATTACTTAAGAATTTATATTTTAGAGGTCAATTGGGAAATTGTTATGGTCCCCGGTTATTGATCTCGTTATGGGATGCTGCAATATGAAATCTGAAGTTTTCTTCTTACGACCTATGGTGCTGGTTCGCTAAGAGAACCTGCAATCTCTTGAGTTAAAGTACTCAAAAACTGAAAGTACTTTTCTGCTTCCATTTCCTGAGACAAACAGACAATTTAAATACAACTTAAAAGATAACTACCCCTAGAAACTAGTACATGACTTCCTAACATAACTGGAACGAAAAACTGTACTCTTACAGGAATATAACTACTACTAAAAGGAATAACTACTGCTAAAAAGAAATAACTAATGCTGTAACTATTGGATGACTAAAGAGTGATAACAGAAATATGTAAGTTGTATTATTTTTTATTGAACCATTTTCATTTACTATATTGAATATGTTAGTAGTTTTAAAGAAATTATCTTAATAAATAATGCTCTATCACTCTTATAACAAGTTAAAAAGGTTAAAATTAAGTTTGAACCCGTGTAAAATCACACATACCCACAACCTGCCACCCGCCACGTTCCGCATTAGTTTTAAGAAAGCCCACTTCAACCCGCCCTACACAACCTTAAACCTGGCCCACCCCTCATAGCCTTAAACCCAACCCGCCTCGCCCCATTGCCATCCCTATATAAATGTGAATTGAATATATGACCTCATTGACATAACTTTCATCCATACCTCGCCTTTCTCCTCTCCCTTTTCTTGTGACATGCGCAAAGAAGAAAACGTGGAGTTAAAAATCTCTCCTTATCTATACTAAGTTATCAAAAAAAAAAAGAATCTCTCCTTGTATCATCTACTTGTGGGGTCTTTGGCATATTAATGATGTTATGGTGCCGAAAAAATATATTATTTAAGTGTCATTCCTTAATATGCACTCTGTGGGGTGTCCAAAGTGGGGTACCAGTAAGCTGGAGAAACAGACCAGTATGGTATAAGAACCTGATTTACAAACTGTATGGAACTAAAGGTTTCCCAAATGAGGTGGAGCATAAACTTACTGGAAGCGAATTGTAGTAGGGCCTAAGACCTTGAAAATGAATCAAGGAAATTATTAAATGTACTTTTTAAGCATTGAGTCGCATATGGATTTCAAGTTTTTGATATTTGATTTCTTGCTCCTTTCTATCCTGTGGGTACAAAGAAACATAAATTCACTTAAGCGAGTTGGCAACTTCTCTGCTCTACAATTCAGATACATATTCTCAGGTTCCTGATATCTTTCTTTTATTGAATGGAAGACTTCTGATAGCATTACTTGGATGGGAAATAGAATTTACTGATATGTTCAGCTATCCATATTGATCATCTTGATTTTAGTGTCTGTCATTCAAAATCATATGTTCTATAAACAACAATTTTTGATATTTGCAATAATATGACCTTTAATTTGTAGGGGTACTATATTTTCAGCCAGAAACTGAAGCACGTTATTCGCCTACCATTTGCTACAATCGCATATGGTATGCATCAGCTGATTCTCTATTATATGCGGCAGTCTTTTCTTTTACTATCCTTTTTTTCAATTAGTTTTGATCATCTCTACCGCTAATCTTTGGTCAAAAAAAATCTTGCTATAGTTTCCAACTATTTTCCTTATGATGGTGGTGTACCGTGTCTGGGACAGCTTGTCCGCAACTCAACTATTCCACCGGTACTTGCTACCTCCGACAACACAAATGTCGGTTTAACTCTGCCTACCAAGACTTAGGCAGATGGGAACAAATCATCTATCATGCCAACTATTCTGCTATAAGTGAATTGCATCTCTGCTATTTTCTTACAGAAATTACAATTATTTTCTATGTATGATCTGTTAATTTGCACATGAGGATCTGGTCTTGGACCTTCTCAATCCTCCACTATAGCTCCCATAAGGGAAAAGAGAAGTTGATAAATCTGAGTGTGAAATAATTAATGAAGCTGAGCTTAAAAGATACTAATATTCAAGAGAACAAAATGTTTGCATGAAACAAATTAAGATCATTTTTTTTCCTTTAAAGAAAGCTGTACTGTTGTAATTTCTTGTCAGATCAGTCTGTCATCTGAATAATACTTCAGGAACAACGAAGTAGTTTATTTATAAGTTGCTTCCATAATTGTTTTATAGAAGTAAGAATTATTTTACTTTTTTTAAAAAAAATTGAATAATTATTTGAAACACTTCAATTACAGGAACTGCTGCGATGCTGCTTGTCATGGTTTGGGACCCACATATTGGCATCCTCTCTATGTTGACACTATTCAGGTTTACATTCCAAGAAATTGGCTGCATCAATTTTCTTAGTTCTGTGCAGCTCCTTGCATAAAGAGATGTTTATTTAGCAACTTCAGTATTGGAATGGTCCCGGGTGACTTTTTCCTTCTTAATTTGAGGATAATTACTGATGTATGATATCTTATCAAGGTTCTCTATGATACAGCTATTTTTTAGCAAAACATAAATGTTAAATCTAAGTTATGCAAGACACTTTTAGGCAAGGTAGCATTCTAATCAGAGAGGTGGTTTTGAGGATAAAATTTATAAAAAGTTTTCAAAATCTTTAGGATTTCAAGTTTGGATAGGTGAAGAAACTTTAAATATGGAAGTATGATGGAGAATAATAGCTTTATTTACTATCCATAAATGAGTTGTAGATTAGGAAAATGAGACTCTCAAGGAGTTACGTGTGGGACTTTTTTGGAGCTTTAAGTTTGGCCGCCAGGTTCTAACATGAAAAAGGTAAAGAAATTGAATCTCTCTAATTCTTATTTTAATTTGCTTTGTTTTGAAATAAGAATCATCAAAGAAACATCTTAACTATACAACCTGAAATTTTCAGTAACGGTATTTTCCAGAAAACTCTCACAAATGTACAGTGTAATAGGAAGACGGTAAAATATAAGTTGCTGCCGTTTTCACTTTAGCTTAGAGAGCTCCACCTCAAGGACTGAAAGCAAATGAATGTTAAATTTTTTGTAATAGAAACACATTTTCCAGACTTGCTCAAATGAAGAGTGTAATGAGGCAGAGGGTAAACTGCTTCCGTTCTCGCTTTGGTTTAGAGATATCCACTTCAAGGACTGAAAACAGTTAAGGTGGATTTGATATATCATATATCAATATGTTCTGTTGAATCCACGAAAAATTAGGACCAAAAATGTCAGATTTGTGGGGTGGGATTTATCTCCATTTGTATTTGGGCAGTAAATGAAGTTCATGGATGTAGCACATGAACTTGATCTTAGTTCCCCAAAAATAAGTTCATCGAAATCCTTAAAGTTGTCATTCATGGGTGGAAGAAGAAAGAGCTTGAAGATTTCAGTGGTTCAGGCTCAATGTAAAGGCTACTTTGAGGCTTTACAATTATCAAAATATTAGGATTTAGGACCTCAAGGATGTGTGTATATCTGATCACATTTTTGTTCCTTAAGTGACATGCAAAGTTGGACGTTCCGTGGGCTATAACTGTGGTATTGAAGTTAATATATTTATTCTTTGTAGTGTTCTCTAAACTTGCTTGCTTCAATTTTGTAGGATTGTCATGCTGATGGAAGTAGTATGTGTTAGTTCTTTCATGACAGTCTATATTGGTGAGTAACCACCTTTAGGGGTTGCTTTTAACAAGACCCATTTTCCTTGGTAAAATTTCATCGTTTTAAACCCCTTAACTGTCTAGAAAAGACTCCTACTGAATTGCATGCTTGAGAGATGATGTTAAAATCATAAAGCATCTTCATGTTTGAGAATTTGAAAATAGTTTTTTTCTTTTAAATGACCTATTAGAAATTCCAACCTGTTCTGTATTATAAGAAAGTGCAGATGCAAAATAAGGTCAATTAAACCTTCTACTCTCTGCAGGTTGTGTTCACCAGTACAATTCATTGGATTCCCAGCCTGATGTTTTAAAATCACTTTATTCTCCACTTCAACCATCAAGTTCTCTGGAAGGTTTGAGGTACCTGAGGTTTACAGTCTGATTATGGAGAAACATATTGTCCAATAATTTGGTGACTGTTACTTTACCTTAAAGGCATGCTTGAAAACCACTGTCTGATTACATGGCTGTGTAGAAACTAGTAATTACACAATCTAATAGCTACACAATATAGTAATTACAGGGTGATATTCAATCTCATGTTTGGTTGGGTAATTACATAGTTGAATATTCTTTTATTTTCAACAAAAACTCATTATAACTTTTTTTTTTCTTCATATGAACATGTAATGAGTTTTAATGTGTGACATAATGTGTGTGTAAGAAATATTAACAATGAAAAAAGAAAGAATTTTGAAAAGCCATCTGGTAATTAGACTTTGTATTTACTTCCAATTCTTTGCTCCTCTTGAGAACTGGAAAGTGTACCTCAACTACACCAAATTCCAAGCCGATGAAGTAGTTACTTGGCCAGTCGTTAAAAGGGTAATTACACTAATTATGCCCTAATTCAATTACAAGGGGGCCATCCAATGAGGCCCTAATTTTGTACAGGATAGTGGAGGAGGGCTCTTTCATGATTCTATTTACAACAAGGTGCTATGTGGGTGTAATTTCTGTGCTTTTTAAGTCTATTTTTTTAATTAAAAAAAGACTTTAACACACTTATTTTTTGAGCCTGTAAATGTACACACTTCTCTTTTTGAGCCTGTAAATGTATCAAAAATTATGCTCTACTCTACTTGACAGGGAAACAAAAACTTCAATGTGTTTGGCAAGTCAAACTACTCTCCAAGTCCCTATATAGATAACTCTGAAAAGCTTTACTAGATTTTCTTAATTGCAGTTTGTTAGATGTGTGTAGTTGAAAACTGGGGAAGTGAGGAATTTTGTTGAAAACTGTGATATCAAAGCTATAATAATAGAAAGAAGTATTTATTTTATGGCAAGTGTAGATCTTGATGGTGGGGATCTTTGCATTAGAGGAAGGAGTAAAATGAGTTGGAACGACCAAAACTGAGTTGGGTCAAACAAATTGGGATTGACAATAGTGTCATCTTTGTTTGAGTTCATGTTTGTTGAGATAATAGTTAGTAACTAATAAGTGTTTTTGCGACATGATATCTTGTTTGATCTCTGATATGATCAATTATTTGGCAGTTGGAGAAGTGGAAGGCCTTAAGAGGAATAACCAATGCTAAAATAATAAAACCCAACCTTCTCAAAAAAAAATAAAAATCCCAAGTATTTTCTTGTCTTTTTTAAACCAATCATTATATGCAGCAGGGATTTGTCGTGTCAATGCGACTATCTTTATGGCCCTCCAAGAGGACTTTTGAGAAGAGGTGGAAGAAAGCTTCAATGCTTCTAAATCTTTTTCACCACTGCTTCTAGATGATAAAATGATAATTTTGCTAAGAGCCTTTTGTTGTACAGGTACCAGGATGGTGGTCGCCTGTCAGATCAGCAGATGGCGTTGTTGCAATATCAGCAAGAAAATATACACTTTTTGGGTGAGGAGGTAAGCTATTATTAGAAATTCCTAGATCTTGCTGGCAGTATGCTTCCCAAGCTTTTTGGGGGTTGGGAAGGATGTAGAAACTGGACTTTGGGCTGCTCTATATGAGTTGGTGAATCAAGTAGTAATTAATAACAATTAGAAGTATATTTATTAGTATAAGTTAAGAATGACCTGCTTACGTCTTGTCTCTTCAGGATGTCTATATCTCTTATGGCGAAATGGATTTTAATCCTGATTGTTTCTTATAGGAATTTTTCTTTTTTTCTTGAGTTAATTTAATCCTTTTTCTTCTAGATTCTTAGACTGCAAGAAACCTTGAGCAAATACGAAAGATGTAATGATGGGAGTGCACCTCAGGTATGTGTTTCTGCTGTTCAAAACTGTGTTGCTGTTTCTATATTATATTGGAAAGAAACAAAATTTACTTGTTGGGCTGCACGGCAAGTTAATTCTTTTTAAGCTATACAAATAAAATAGGAAAATGGAAGAACTTGAGAAACATGAACTTGTAAGATCTTAGTGGAGGTACTGTCTGTTTAAGATGATCATCCAGCTTTTCTGTCCTATTAGTAGTGGCACTAAAGCTTGGCCCCGATCCTATCATTTTGATCCCTCATGTCAATGAGTTCTAACGAACTGAACAAGTAATATCTGGTAGCAACTGAAAGGGGGGAAAAATCCAAAAAGAAGAAATATCATAGATGCTGAGAACGATATTTGCATACACTAACACTTGCATCTTTCATTATTCTCTCACGATTTTTTTCTGAAAGAAAAATTGATAACTGTATGATATGGGACTGCTGATAATGAGATTAACCATATTGAATAGTCATTAATCACTAGAATTTGGGATTAAGTTTTGAAAGTGATGAAGTTAACGACTTGTCTTGGTTCTTCCAGGTAGATCTTGCTCACCTGTTGGCAACTCGAGATCAAGAGTTACGTACTCTCAAAGCTGAGGTAATATGTGACATGCAGTTTTGTCCTTTTTCATTTCCAACAGGCCTATGGTTCTGATAGCACACGTACAATGGCATGTCTGTTTTGTGGGAAACAATATCTTTTTTCTTTCACTTTAAACTGGAGGTTTAGTGCATCTTGTTTTATCCTTTAACCTCTTCTGCTAATACTTGTGGGTTTCAGATGAATCAATTACAATCTGAGCTTAGGCTTGCTCGATCTATTGTAGAGGAGAAGGATGCTGAGATTCAGCGTATTCGCAATGCAAACAATCAGGTGTGTTTTAAAATGCTTTGAAAGTCTAGTAACATTTTTGGGTTGTGAAAAGAAGTAAAATATATTTGGTTTACTTATAGCTGGGCTTAGTTTTCTTCTGTGAGTGGTCACTTATGTTGATTGGGACTTGCTTGCGTCTTTCGATCTTCTTTCGTTAAATTACATTGTAGTATTATTTTTTCATGCAGTCATTTATCGGCCTTATAAAAGTGGACCATTGTGAAAGTATTTAGCACATTCTTCTTTATTTCTTTTTTCTCTTTGCTTTCCCCTGTTAATTAGTTTGTTGTTTCTCAACTGCGATAGCAAGTTATATCTAAACTGTTAAATGTTGTCAGCTACACAAGTCTTATACAACGACAACCACCTAGTCGATCACATCTAGGTTTATTCTATCTTCATTGTATGTCTTGTACAGTATTTGGGCTCTCGCATGCTTGCTTGATCATGCCTTTATTTTATTTTTTCCGAAGAAGGGTGCTTGATATCTCTCTCTCGCTCTCTGTAACAGTATGTAGAAGAAAACGAGAGGCTCAGAGCTATTTTGGGAGAATGGAGCAGCCGAGCAGCTAAGGTAGTACTTCTTATTTATGGTTCATTGCTATAATGCTGTCGTTTCCTTTTCCTCTATTACACCAAACGTCTTTTTTTTCTTGGCTGGATAAAA-GCTCGAACGTGCTTTGGAGCTGGAAAGGATGTCAAACTTGGAACTGCAGAAAAATATAACCACACTGAAGATTCAAATGTGTGAATAGTTCAGCCTGACTAACTGCTAGATCTTCTTTTGCTGTGTACAATAGATCCTTGTGGTTCTGCTCTTCCTCGGACCCTGTGCATAGCAGGAGCTTTCATGCACTAGGCTGCCCGTTTTTAGATCTTTTGCAATACCATTGTTGGAAAACCTAATGGTTCCATCTGCACATGTACAGATTAAGCTCAAACAATTGTTTGCTCATCTTTCAGACTTTAAGCTTTGTATAGTTTTTCTCCACTACTATTTATCTCACATATTTTCTTCCTATTTTAGGTTTCTTTTGGATGAATCTGTTCTAACAATTTGCTTTTACTGTAAATTAGTCATTTTATTGCTATAGCCA</genome_strand>
        <mrna_strand>TTTTCGAAGTAATTTTTTTTGAAGAAACTGTAAATATTGTGAAGGAGAAAAATCGTTCGAGCTAGACGAAGAAGACGAAGATCAAAAGATGTCTACGGAAATACATTCTTCTTCAATTTCAGAATCACCAGATGGAAACAGTCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGGACGTACTGCATGAAGCACCTCTATCCGGTCATAGGAAGCCTACGAGCCTTATTGGGAGTATTTTCTACTGTTTCTTATTG............................................................................................GCTTTGCTGTTTTGGCGGTGGGAGCTACATGGATATTTCACCCTATAGAAAGATTAGTGTTCCCACTTCTTTGCAGTTGTAATGCTGCCCTCCTTCTTGTCACAG...........................................................................................................................................................GCATTTTTCAGCAATATTTGGTCTATCAAGTCAAGAAAATACGGTTACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTGCTGCGATGCTGCTTGTCATGGTTTGGGACCCACATATTGGCATCCTCTCTATGTTGACACTATTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAGGATGGTGGTCGCCTGTCAGATCAGCAGATGGCGTTGTTGCAATATCAGCAAGAAAATATACACTTTTTGGGTGAGGAG......................................................................................................................................................................................................................................................................................................ATTCTTAGACTGCAAGAAACCTTGAGCAAATACGAAAGATGTAATGATGGGAGTGCACCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGATCTTGCTCACCTGTTGGCAACTCGAGATCAAGAGTTACGTACTCTCAAAGCTGAG.......................................................................................................................................................................................ATGAATCAATTACAATCTGAGCTTAGGCTTGCTCGATCTATTGTAGAGGAGAAGGATGCTGAGATTCAGCGTATTCGCAATGCAAACAATCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAGAAGAAAACGAGAGGCTCAGAGCTATTTTGGGAGAATGGAGCAGCCGAGCAGCTAA-GTAGTACTTCTTATTTATGGTTCATTGCTATAATGCTGTCGTTTCCTTTTCCTCTATTACACCAAACGTCTTTTTTTTCTTGGCTGGATAAAAGGCTCGAACGTGCTTTGGAGCTGGAAAGGATGTCAAACTTGGAACTGCAGAAAAATATAACCACACTGAAGATTCAAATGTGTGAATAGTTCAGCCTGACTAACTGCTAGATCTTCTTTTGCTGTGTACAATAGATCCTTGTGGTTCTGCTCTTCCTCGGACCCTGTGCATAGCAGGAGCTTTCATGCACTAGGCTGCCCGTTTTTAGATCTTTTGCAATACCATTGTTGGAAAACCTAATGGTTCCATCTGCACATGTACAGATTAAGCTCAAACAATTGTTTGCTCATCTTTCAGACTTTAAGCTTTGTATAGTTTTTCTCCACTACTATTTATCTCACATATTTTCTTCCTATTTTAGGTTTCTTTTGGATGAATCTGTTCTAACAATTTGCTTTTACTGTAAATTAGTCATTTTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0133N05-9n0MA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321991" ref_strand="+" ref_description="SGN-U321991        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr2:12044754-12046100 REVERSE | Aliases: T3B23.10, T3B23_10(evalue: 1e-90, score=330) genbank/nr: gi|30683816|ref|NP_180390.2| expressed protein [Arabidopsis thaliana] gi|38454106|gb|AAR20747.1| At2g28230 [Arabidopsis thaliana](evalue: 9e-89, score=330)">
      <seq>ttagttctttccaccgagaagagctgaagggattttcaggtgtaagttcctccggcgaactttccggtaagaggaaagggaatttggggtttaattttctccggcgaactttccggtaagaggaaagggaatttggggtttaattttctccggcgaatctcccggtgagaggaaaaagggaactgtttctgcaatcaacagaatgccaatcaaatgggttttgcactggcaaccaaatgcagggacaacagtgaacagtcaaatactgacagaagtatctcaatgtgttgagagcattaatggtgttaaagaaggaaggtggaaagacactcttagtttctataaacccatgcttagagtcgaacaagcaaattcactggagtttccccgagattttctggggatttcacttcaagaacagcccaacaagtattacatggtaattagagggcaacggttgatcattgaagcagagtcatcaattcagacgataatggagaagttgcagtcgtacaaaacgagggtggcacttaattttgagggatttcagtatcaacttggtgacttccagctgcgagtggggaaagttgttacaatacactctgagaacttgaggggaatagttatggagatggagtatcttccgatttcctcatgggagacatcgcaccaaattatgggtgaattcttcgacatatggcaggaagctcttggaaaacgatcattaccaggtcattttgtgcacgttgaaccaaatttttcagagtatggtctctctgatcaatacacttcacagcacacggctgtacagtatgctagcatcatggctcaaatgatagcaacagctcaatcatcacaaccagtgagaaattagaaagcagcataatgttctgttgacagtattaacattttggcttgatacctgttgtattctcaacacacaaacattaaaagaaactgtagtgttctgttaaccaggtcattatgatgctactactgctgccttatatagaaaaccaatgttgaagacagttatagaagtagtaagaaactgaagtgtttcatgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0133N05-9n0MA/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0133N05.1" temp_strand="-" temp_description="C12HBa0133N05.1  AC216296.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0133N05 upload_account_name:italy">
        <position start="69584" stop="2641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69284" g_stop="69069" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69068" i_stop="68973" i_length="96">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68972" g_stop="68830" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="359" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68829" i_stop="67953" i_length="877">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67952" g_stop="67771" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="541" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67770" i_stop="66009" i_length="1762">
            <donor d_prob="0.806" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66008" g_stop="65919" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="631" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65918" i_stop="65368" i_length="551">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65367" g_stop="64934" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="1065" r_length="434" r_score="0.979"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64933" i_stop="64843" i_length="91">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64842" g_stop="64826" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1066" r_stop="1082" r_length="17" r_score="0.529"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0133N05.1" gen_strand="-" ref_id="SGN-U321991" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>1082</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0133N05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U321991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69284" e_stop="69069"/>
          <exon e_start="68972" e_stop="68830"/>
          <exon e_start="67952" e_stop="67771"/>
          <exon e_start="66008" e_stop="65919"/>
          <exon e_start="65367" e_stop="64934"/>
          <exon e_start="64842" e_stop="64826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTTCTTTCCACCGAGAAGAGCTGAAGGGATTTTCAGGTGTAAGTTCCTCCGGCGAACTTTCCGGTAAGAGGAAAGGGAATTTGGGGTTTAATTTTCTCCGGCGAACTTTCCGGTAAGAGGAAAGGGAATTTGGGGTTTAATTTTCTCCGGCGAATCTCCCGGTGAGAGGAAAAAGGGAACTGTTTCTGCAATCAACAGAATGCCAATCAAATGGTAAGGATTTTGAATTTCACTAAAAACTAAACGTTATTTGTTGATTTTGCTGTGTTAGATTAAGTAGTTTTAAGTGTACAATTTTTGTTTTGCTAGGGTTTTGCACTGGCAACCAAATGCAGGGACAACAGTGAACAGTCAAATACTGACAGAAGTATCTCAATGTGTTGAGAGCATTAATGGTGTTAAAGAAGGAAGGTGGAAAGACACTCTTAGTTTCTATAAACCCATGCTTAGAGGTATTTCATTGCTTAATAAACCATGTGGTTTAGTATCTTTGAATTTTTTGGGTTATAACTGTGATTTACTATAAAGGGGTGTTCTTTTTTAATTTGGACTCCTTAAAAAGATTGGATTTTTGTAAAGGTTTCATTTTCTATATGGTAAAATATTTTTATGCGAAGTAGTTTTGGAATGATTCGAGTCAAGAATTGAGTAAAATGGTCGAGGAGGATTCACATAACCGACCCCAAGTTTGTATAGTTAATTGATTGATTGTGCCTCTTTTGTGTGGCAGCCTTTCGGGAGAGTGGTAACTCATAGAGGAAATAGGGGTGGGATTGGGGGGAGCGTTTGAACATTTACAGGGTAATTATATTAAGGAAAATTAATATTTGGGCAAGGATGTGAAGATTTACTGAGTGAACATTCTAAAAGAAAAGTTAGGACTCCCTTTGAGTTGAGCAGCCTATAGTGAGGCTGAAAAAGGTGTCTTCTCCTTTGGCTTTTGGGAGAAAAACCCTGGCCTTCTAGGCTATATAACCGATGAACACATACATTGATATATATATATATATATGTTAGTATAAGTTTAAGATATTCATTTACAAGCTAGTTAGGCTTGCTTGATAATGCATATATTGTGTGTTAGTTTACCTGTTTGAATCTCGCATGTCTTTTTCTTATAATCAAGAAATCTCTTGATTGGCCCGCTTGTCTACTTATCCACTATAATACTTGGCTTTTGTCTGCGGTAAGCTTGAAACTGATGTCGTACATCTAACTTACACATTATGCATTGCCCTCTTTCCAGAAAACAACCTTGTATGTCATTTTTTGTGGGTACTTTTGCACATTAATAAGAGATTTGATAGTGGAGTGATTTTTTTTTATTAGTCGAACAAGCAAATTCACTGGAGTTTCCCCGAGATTTTCTGGGGATTTCACTTCAAGAACAGCCCAACAAGTATTACATGGTAATTAGAGGGCAACGGTTGATCATTGAAGCAGAGTCATCAATTCAGACGATAATGGAGAAGTTGCAGTCGTACAAAACGAGGGTGGCACTTAATTTTGAGGTTTGTATTACTGAGATTTGCAGATTATGGTTCTTACTGTAGGAGGATGATTAACTTATCTAGCTTTATCTACAACCTTGGCTTTGTTGTGAGTGATATCATCTGCATGCATTGTGCTTCAATGCTTTATGAAGATTGAAGAACCCTTTTTTTTAATGAAGTAAGTGATATATATAACATAGAGGGCATAGAGAAGAGGCAGAGGAATACAAAAGATGTGAATTTGACATCTCATTTACAAATGAGTGCTACAAAAACTATAGAGCTGACAAAAAACAAGGAAGAAAGTGCAACAAAACAAAAGAGCTAAGGAAATCCAAATGAAGAAGCCTATTGAAGTTGAAACCCAATCAAAACATCTGTTGTTCCTTTCTTTCGAAATACGCCAAAAAAATGCTAGCAGGTACCATTTTCCAGATTTTCCTGATGGAACTGTCAAGTTTCTTTGAGCCTCCAGCTCACATAGGCATCTCTGACAGAGAAGGGCATAGCACAGTATAATCCAAAAATATTAAAGAACATGTGCCAGATATCTGAAGCTACTGGACAGTGGAGAAAAAGGTGGTTTATAGATTCTGAGTTTGACTGACATATGAAGCACTTGTTGTCCAACTGCAGACCCCTTTTAGATAGGTTGTCTCGCATTAGGCAGGCATCGCTTAAGATGAACCAACTGAATCAGCACACTTTGGAAGGAAGTGTTGTTTTCCAAACTAGTTTCCAGGTCCACAAATTGATCAACATGTTGTTTGAGCACATATCAGCATAACCAGCCTTGACAGAGTACATTCCACTCTTAGAGCTTCCCCATTTCATTTTGTCCTGTTGAGAGCTGGTAGTGCATCTTTCCAGTAGTTTCAGCATTTCAAAGTAAACCTGCAGTTTCTTTCTAAGAATTGTGCTCCATGTATTGCCTTCTCTGCTTCGTGCAACCTAAGAGTCTGGATTCCTTGCTATGAAAAAGAGATTTGGAAAAGCATCCTTAAGTATTGTACCCCCTGCTCATTTTCTGTCCAAAACTTTGTGTTTGCCCCATCACCAATCTGAAAATGGACATCATTGGAGAAGGTTCCCCAAAGATTGTGAATGCTCTTCCATAATCATGTGCCATGAGGTGTGCTAAATGCTAATAGCTTTAGAGCACCAGTGACTGAATCTACCATCTTTTGCAATACTAATTTCTTTCCATAAGGCAGCATCATCTTATTTAAACCTTCAACTACATTTCATCACATGTTTTTGTTATTTAAGGGTAAGTCTTTGACCCCCCATTTCTCCAAGTGCTTTTGGAAATGTAACTTAAGTTCATTTCACCAGGTAAATCTTGTGACTAGGGCTATTTGCTTAACATAGAAGAACTTCCACACTTTTATATAATCATTTTACTTTATAAAAAGAGTGAAGATAGAAGAACTTCAAGATGATAATGTTTAACAGGCTACATGATGTTTCCCGAAATCATGTATCGATCATAAAAAAAAAGTTTCAATTCTTATAGAGTTGTGTCATCCAATTGGTTGGTCATTGGTCAACTATACTTTTTCAAACAGGACTCATTCTTTTGAACTGGTCAAGTCTGTTCCTTGCAATACCAAAAGTATTATATGTTGTGAATGTTGCTTGCTATCTATGGTGATTCTTAGAAGATATTTTTTGCAGACTTGTCATTGTTTTCCTTGCTTTGGTTTATCCTTCAGAATTCTAAAAAAGGACGGACTTAGCACTACTTCATAATACTCATTAGTGTATTTGACTTATATAGGGATTTCAGTATCAACTTGGTGACTTCCAGCTGCGAGTGGGGAAAGTTGTTACAATACACTCTGAGAACTTGAGGGGAATAGTTATGGAGGTATGAATACCTTTAGATATTTCTTCTCAATTGAATGCTTGTTATGTGGTTAAGCCTTTTTTTTTTGGAAAATGACTGTGTAGGATTTCTGTGATCTATTATGCTTTTAATTCTGCCTGGAGAGGAATTCGTTTATTGAGCTTTACTTGGAAAAATAATCACTATGCGTATCCTCCTCTTAATGCTAAAAGATGTGATGAAGCATGTTTTCGCATTAAAAGAAGCAGTGATGGAAAAAATGAAGGTACAATCAAATGGATGAGAATGAAGTCAATAGTTGGTATCTCTCGGGGCAGCATGCTTTAGGTATCACATATGACACTGTGTGGGAACTATCTTGTTGTCCAGCTGACCCCAATTTTGAATAAGGAGAGTTGCTATAGATCGATGGCTAGTCTAAAAATAGTCAAATTATACTGATGTTCTTCGAATGCTAATAGAGACGATAATTATCTCATCAGTATGTACTGTTAGATGGACTGATGTTGCCTAGTTCTTACCTTTCCAGTGTGTTGTGAGCATGCTGGCCTCAATGTTTGTTTCTTTTGTAGATGGAGTATCTTCCGATTTCCTCATGGGAGACATCGCACCAAATTATGGGTGAATTCTTCGACATATGGCAGGAAGCTCTTGGAAAACGATCATTACCAGGTCATTTTGTGCACGTTGAACCAAATTTTTCAGAGTATGGTCTCTCTGATCAATACACTTCACAGCACACAGCTGTACAGTATGCTAGCATCATGGCTCAAATGATAGCAACAGCTCAATCATCACAACCAATGAGAAATTAGAAAGTAGCATAATGTTCTGTTGACAGTATTAACATTTTGGCTTGGTACCTTTTGTATTCTCAACACACAAACATTAAAAGAAACTGTAGTGTTCTGTTAACCAGGTCATTATGATGCTACTACTGCTGCCTTATATAGAAAACCAATGTTGAAGACAGATCTATAAGTAGTAAGAAACTGAAGTGTTTCGTCGATTTTAACCTTGGCCACAAGTAACATAGAGATAACTGGTATCCAAGAGTGTGCTTTCTTTAAATTCTGCTTTATTCTTTGTCTGTTCAGGAGCAAATTTGGAATAA</genome_strand>
        <mrna_strand>TTAGTTCTTTCCACCGAGAAGAGCTGAAGGGATTTTCAGGTGTAAGTTCCTCCGGCGAACTTTCCGGTAAGAGGAAAGGGAATTTGGGGTTTAATTTTCTCCGGCGAACTTTCCGGTAAGAGGAAAGGGAATTTGGGGTTTAATTTTCTCCGGCGAATCTCCCGGTGAGAGGAAAAAGGGAACTGTTTCTGCAATCAACAGAATGCCAATCAAATG................................................................................................GGTTTTGCACTGGCAACCAAATGCAGGGACAACAGTGAACAGTCAAATACTGACAGAAGTATCTCAATGTGTTGAGAGCATTAATGGTGTTAAAGAAGGAAGGTGGAAAGACACTCTTAGTTTCTATAAACCCATGCTTAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAACAAGCAAATTCACTGGAGTTTCCCCGAGATTTTCTGGGGATTTCACTTCAAGAACAGCCCAACAAGTATTACATGGTAATTAGAGGGCAACGGTTGATCATTGAAGCAGAGTCATCAATTCAGACGATAATGGAGAAGTTGCAGTCGTACAAAACGAGGGTGGCACTTAATTTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTTCAGTATCAACTTGGTGACTTCCAGCTGCGAGTGGGGAAAGTTGTTACAATACACTCTGAGAACTTGAGGGGAATAGTTATGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGTATCTTCCGATTTCCTCATGGGAGACATCGCACCAAATTATGGGTGAATTCTTCGACATATGGCAGGAAGCTCTTGGAAAACGATCATTACCAGGTCATTTTGTGCACGTTGAACCAAATTTTTCAGAGTATGGTCTCTCTGATCAATACACTTCACAGCACACGGCTGTACAGTATGCTAGCATCATGGCTCAAATGATAGCAACAGCTCAATCATCACAACCAGTGAGAAATTAGAAAGCAGCATAATGTTCTGTTGACAGTATTAACATTTTGGCTTGATACCTGTTGTATTCTCAACACACAAACATTAAAAGAAACTGTAGTGTTCTGTTAACCAGGTCATTATGATGCTACTACTGCTGCCTTATATAGAAAACCAATGTTGAAGACAGTTATAGAAGTAGTAAGAAACTGAAGTGTTTCAT...........................................................................................GAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>12</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="4" PGL_stop="201"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4" e_stop="201"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4" e_stop="201" e_length="198"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4" stop="201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344727" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTGGGAAAGAGAACCTTGATGAGGGGTTGCACATTGCAAGCTCGATTAGGAAGAGCATGAGTATTCATAGCAAAGGAGGTGATTCTATTCGTGGAGGATCAACACGAAGGGGAGGAGGATCACAAAGTGGTAAGGCTATGGGAGATCTCGTGTTAGTGAACAACGAAAATGGTACATTCGGATTGCCTGATTTGATG</gDNA_template>
            <first_frame> L  G  K  E  N  L  D  E  G  L  H  I  A  S  S  I  R  K  S  M  S  I  H  S  K  G  G  D  S  I  R  G  G  S  T  R  R  G  G  G  S  Q  S  G  K  A  M  G  D  L  V  L  V  N  N  E  N  G  T  F  G  L  P  D  L  M </first_frame>
            <second_frame>  L  G  K  R  T  L  M  R  G  C  T  L  Q  A  R  L  G  R  A  *  V  F  I  A  K  E  V  I  L  F  V  E  D  Q  H  E  G  E  E  D  H  K  V  V  R  L  W  E  I  S  C  *  *  T  T  K  M  V  H  S  D  C  L  I  *   </second_frame>
            <third_frame>   W  E  R  E  P  *  *  G  V  A  H  C  K  L  D  *  E  E  H  E  Y  S  *  Q  R  R  *  F  Y  S  W  R  I  N  T  K  G  R  R  I  T  K  W  *  G  Y  G  R  S  R  V  S  E  Q  R  K  W  Y  I  R  I  A  *  F  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0133N05.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4" stop="201"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGKENLDEGLHIASSIRKSMSIHSKGGDSIRGGSTRRGGGSQSGKAMGDLVLVNNENGTFGLPDLM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="1187" PGL_stop="1829"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1187" e_stop="1829"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="1187" e_stop="1829" e_length="643"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1187" stop="1829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328288" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAATACGAGCCACTTCTATCAGATTACGCCTTCTATCCACTGATCAACAACACACAAATAGTTCAATCCCTTTTCGCGTATAAAGCACCAGAAGCCACACAACATCAACATCTCACTCCAAAATGTGACATATATTGTCTTGGAATCATAATACTAGAAATCCTTACAGGGAAATTTCCTTCTCAGTATCTCAACAATCAAAAAGGTGGAACGGATGTTGTTCAATGGGTGCAATCAGCTATAGCTGACCAAAGAGAATCCGAATTGATTGATCCAGAGATAGCGTCTGCAACAGATTCCGTTGAACAAATGGTGAAACTCCTTCATGTAGGAGCTGCTTGTACTATAAGCGATCCGGATAAGAGGATTGATATGAAGGAAGCATTAAGGAGGATAGAAGAGATAAGTTTAATATGATAATGAACATAACACGAAAGGTTAGTAGATTTTCGTGTGAAAGCTTTAGTTACGTTACATGCCAGAAGAGAGCGATCCTTATAGCCTCATTTGATTCCGTTTTATCTCAGTTAAACTCTACAACGTCTCTCGACTCACTTCATTTGCCAAACAAAACAGAGTTTACTGTATCTAAAACACCAAAATAAGACTTCTAAATTTCCACAAAAAAAAAAAAAAAAAAA</gDNA_template>
            <first_frame> E  N  T  S  H  F  Y  Q  I  T  P  S  I  H  *  S  T  T  H  K  *  F  N  P  F  S  R  I  K  H  Q  K  P  H  N  I  N  I  S  L  Q  N  V  T  Y  I  V  L  E  S  *  Y  *  K  S  L  Q  G  N  F  L  L  S  I  S  T  I  K  K  V  E  R  M  L  F  N  G  C  N  Q  L  *  L  T  K  E  N  P  N  *  L  I  Q  R  *  R  L  Q  Q  I  P  L  N  K  W  *  N  S  F  M  *  E  L  L  V  L  *  A  I  R  I  R  G  L  I  *  R  K  H  *  G  G  *  K  R  *  V  *  Y  D  N  E  H  N  T  K  G  *  *  I  F  V  *  K  L  *  L  R  Y  M  P  E  E  S  D  P  Y  S  L  I  *  F  R  F  I  S  V  K  L  Y  N  V  S  R  L  T  S  F  A  K  Q  N  R  V  Y  C  I  *  N  T  K  I  R  L  L  N  F  H  K  K  K  K  K  K  </first_frame>
            <second_frame>  K  I  R  A  T  S  I  R  L  R  L  L  S  T  D  Q  Q  H  T  N  S  S  I  P  F  R  V  *  S  T  R  S  H  T  T  S  T  S  H  S  K  M  *  H  I  L  S  W  N  H  N  T  R  N  P  Y  R  E  I  S  F  S  V  S  Q  Q  S  K  R  W  N  G  C  C  S  M  G  A  I  S  Y  S  *  P  K  R  I  R  I  D  *  S  R  D  S  V  C  N  R  F  R  *  T  N  G  E  T  P  S  C  R  S  C  L  Y  Y  K  R  S  G  *  E  D  *  Y  E  G  S  I  K  E  D  R  R  D  K  F  N  M  I  M  N  I  T  R  K  V  S  R  F  S  C  E  S  F  S  Y  V  T  C  Q  K  R  A  I  L  I  A  S  F  D  S  V  L  S  Q  L  N  S  T  T  S  L  D  S  L  H  L  P  N  K  T  E  F  T  V  S  K  T  P  K  *  D  F  *  I  S  T  K  K  K  K  K  K </second_frame>
            <third_frame>   K  Y  E  P  L  L  S  D  Y  A  F  Y  P  L  I  N  N  T  Q  I  V  Q  S  L  F  A  Y  K  A  P  E  A  T  Q  H  Q  H  L  T  P  K  C  D  I  Y  C  L  G  I  I  I  L  E  I  L  T  G  K  F  P  S  Q  Y  L  N  N  Q  K  G  G  T  D  V  V  Q  W  V  Q  S  A  I  A  D  Q  R  E  S  E  L  I  D  P  E  I  A  S  A  T  D  S  V  E  Q  M  V  K  L  L  H  V  G  A  A  C  T  I  S  D  P  D  K  R  I  D  M  K  E  A  L  R  R  I  E  E  I  S  L  I  *  *  *  T  *  H  E  R  L  V  D  F  R  V  K  A  L  V  T  L  H  A  R  R  E  R  S  L  *  P  H  L  I  P  F  Y  L  S  *  T  L  Q  R  L  S  T  H  F  I  C  Q  T  K  Q  S  L  L  Y  L  K  H  Q  N  K  T  S  K  F  P  Q  K  K  K  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0133N05.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1189" stop="1605"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>414</number_coding_nucleotides>
                  <number_encoded_amino_acids>138</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KYEPLLSDYAFYPLINNTQIVQSLFAYKAPEATQHQHLTPKCDIYCLGIIILEILTGKFPSQYLNNQKGGTDVVQWVQSAIADQRESELIDPEIASATDSVEQMVKLLHVGAACTISDPDKRIDMKEALRRIEEISLI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="2759" PGL_stop="5904"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2759" e_stop="2934"/>
            <exon e_start="4456" e_stop="4577"/>
            <exon e_start="5284" e_stop="5904"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.590" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2759" e_stop="2934" e_length="176"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.964">
            <gDNA_intron_boundary i_start="2935" i_stop="4455" i_length="1521"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4456" e_stop="4577" e_length="122"/>
          </exon>
          <intron i_serial="2" don_prob="0.590" acc_prob="0.998">
            <gDNA_intron_boundary i_start="4578" i_stop="5283" i_length="706"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="5284" e_stop="5904" e_length="621"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2759" stop="2934"/>
              <exon start="4456" stop="4577"/>
              <exon start="5284" stop="5904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322481" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGGAGCCAAAAACTTAAAAAAAATAAAACAAAAATGGCATCAAATTCTACAGAGCCTACAGCTTCAAAAATTGTTGCTAAGCTAAACTTGAAGGTACATCCAGAAGGGGGATTTTACTCAGAAACATTTAGAGATAACTCAGTTATTCTCTCCAGATCTCATCTTCCATCTACAT : ATAAGGTTGATCGACCTGTCAGTACATGCATCTACTTCTTGCTACCTTCTGGAAGTGCGTCTCATCTTCACCGGATACCTTGTGCAGAAACATGGCATTTTTATATGGGAGAGCCAATCACT : GTGATGGAGCTAAACGAAACTGATGGCAAGGTGAAGTTAACTTGCGTTGGACCCGATCCCCTCGTAGATGATCAATTCGTGCAGTATACAGTACCTCCAAATGTATGGTTTGGCGCATTTCCCACGAAGGATTACAACATATCTTCCGATATGCAAGTAACGAAAGCACCTACAAGAGATGGTGAGAAACATTTCTCTCTAGTTGGATGCACTTGTGCTCCAGCATTCCAGTTTGAAGATTTTGAATTAGCAAAACGTTCTGATCTTGTCTCGCGTTTTCCTGCCCACGAATCCCTTGTCTCTTTGCTAGCCTTCCCTGATCTGTGAGAGATATGTATTCAATGGCGGATCTAGAGCATAATCTACGGGTTTTACATAACCTAGTAGCTTTTTCGCGGACCTTGTAAAATATCTATATATATTTGATTCTTGTTTCCTGTTTCATCTTATTACTTGTGTGTTATGTGTTCAGAGTGGCAATAAAAGGCAATGAGTAGAGTTATTTTGTGTAAGTTCAGAATGCTTTGTTTTGCTTTCACTTCCGTTTATTCTTTTTCGGAATATTGGTTTTCCCTGAGTCGAGGTATATCAGAAACAGTCTCTCTCTACCTATGAGGTAAG</gDNA_template>
            <first_frame> E  E  P  K  T  *  K  K  *  N  K  N  G  I  K  F  Y  R  A  Y  S  F  K  N  C  C  *  A  K  L  E  G  T  S  R  R  G  I  L  L  R  N  I  *  R  *  L  S  Y  S  L  Q  I  S  S  S  I  Y  I :   *  G  *  S  T  C  Q  Y  M  H  L  L  L  A  T  F  W  K  C  V  S  S  S  P  D  T  L  C  R  N  M  A  F  L  Y  G  R  A  N  H   : C  D  G  A  K  R  N  *  W  Q  G  E  V  N  L  R  W  T  R  S  P  R  R  *  S  I  R  A  V  Y  S  T  S  K  C  M  V  W  R  I  S  H  E  G  L  Q  H  I  F  R  Y  A  S  N  E  S  T  Y  K  R  W  *  E  T  F  L  S  S  W  M  H  L  C  S  S  I  P  V  *  R  F  *  I  S  K  T  F  *  S  C  L  A  F  S  C  P  R  I  P  C  L  F  A  S  L  P  *  S  V  R  D  M  Y  S  M  A  D  L  E  H  N  L  R  V  L  H  N  L  V  A  F  S  R  T  L  *  N  I  Y  I  Y  L  I  L  V  S  C  F  I  L  L  L  V  C  Y  V  F  R  V  A  I  K  G  N  E  *  S  Y  F  V  *  V  Q  N  A  L  F  C  F  H  F  R  L  F  F  F  G  I  L  V  F  P  E  S  R  Y  I  R  N  S  L  S  L  P  M  R  *  </first_frame>
            <second_frame>  R  S  Q  K  L  K  K  N  K  T  K  M  A  S  N  S  T  E  P  T  A  S  K  I  V  A  K  L  N  L  K  V  H  P  E  G  G  F  Y  S  E  T  F  R  D  N  S  V  I  L  S  R  S  H  L  P  S  T   : Y  K  V  D  R  P  V  S  T  C  I  Y  F  L  L  P  S  G  S  A  S  H  L  H  R  I  P  C  A  E  T  W  H  F  Y  M  G  E  P  I  T  :  V  M  E  L  N  E  T  D  G  K  V  K  L  T  C  V  G  P  D  P  L  V  D  D  Q  F  V  Q  Y  T  V  P  P  N  V  W  F  G  A  F  P  T  K  D  Y  N  I  S  S  D  M  Q  V  T  K  A  P  T  R  D  G  E  K  H  F  S  L  V  G  C  T  C  A  P  A  F  Q  F  E  D  F  E  L  A  K  R  S  D  L  V  S  R  F  P  A  H  E  S  L  V  S  L  L  A  F  P  D  L  *  E  I  C  I  Q  W  R  I  *  S  I  I  Y  G  F  Y  I  T  *  *  L  F  R  G  P  C  K  I  S  I  Y  I  *  F  L  F  P  V  S  S  Y  Y  L  C  V  M  C  S  E  W  Q  *  K  A  M  S  R  V  I  L  C  K  F  R  M  L  C  F  A  F  T  S  V  Y  S  F  S  E  Y  W  F  S  L  S  R  G  I  S  E  T  V  S  L  Y  L  *  G  K </second_frame>
            <third_frame>   G  A  K  N  L  K  K  I  K  Q  K  W  H  Q  I  L  Q  S  L  Q  L  Q  K  L  L  L  S  *  T  *  R  Y  I  Q  K  G  D  F  T  Q  K  H  L  E  I  T  Q  L  F  S  P  D  L  I  F  H  L  H  :  I  R  L  I  D  L  S  V  H  A  S  T  S  C  Y  L  L  E  V  R  L  I  F  T  G  Y  L  V  Q  K  H  G  I  F  I  W  E  S  Q  S  L :   *  W  S  *  T  K  L  M  A  R  *  S  *  L  A  L  D  P  I  P  S  *  M  I  N  S  C  S  I  Q  Y  L  Q  M  Y  G  L  A  H  F  P  R  R  I  T  T  Y  L  P  I  C  K  *  R  K  H  L  Q  E  M  V  R  N  I  S  L  *  L  D  A  L  V  L  Q  H  S  S  L  K  I  L  N  *  Q  N  V  L  I  L  S  R  V  F  L  P  T  N  P  L  S  L  C  *  P  S  L  I  C  E  R  Y  V  F  N  G  G  S  R  A  *  S  T  G  F  T  *  P  S  S  F  F  A  D  L  V  K  Y  L  Y  I  F  D  S  C  F  L  F  H  L  I  T  C  V  L  C  V  Q  S  G  N  K  R  Q  *  V  E  L  F  C  V  S  S  E  C  F  V  L  L  S  L  P  F  I  L  F  R  N  I  G  F  P  *  V  E  V  Y  Q  K  Q  S  L  S  T  Y  E  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0133N05.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2760" stop="2934"/>
                    <exon start="4456" stop="4577"/>
                    <exon start="5284" stop="5610"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSQKLKKNKTKMASNSTEPTASKIVAKLNLKVHPEGGFYSETFRDNSVILSRSHLPSTYKVDRPVSTCIYFLLPSGSASHLHRIPCAETWHFYMGEPITVMELNETDGKVKLTCVGPDPLVDDQFVQYTVPPNVWFGAFPTKDYNISSDMQVTKAPTRDGEKHFSLVGCTCAPAFQFEDFELAKRSDLVSRFPAHESLVSLLAFPDL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="12851" PGL_stop="10410"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12851" e_stop="12818"/>
            <exon e_start="12699" e_stop="12518"/>
            <exon e_start="11851" e_stop="11777"/>
            <exon e_start="11623" e_stop="11519"/>
            <exon e_start="11099" e_stop="10410"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.946" acc_prob="0.818" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.913" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12851" e_stop="12818" e_length="34"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="12817" i_stop="12700" i_length="118"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12699" e_stop="12518" e_length="182"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="12517" i_stop="11852" i_length="666"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11851" e_stop="11777" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.946" acc_prob="0.818">
            <gDNA_intron_boundary i_start="11776" i_stop="11624" i_length="153"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11623" e_stop="11519" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.913">
            <gDNA_intron_boundary i_start="11518" i_stop="11100" i_length="419"/>
          </intron>
          <exon e_serial="5" e_score="0.988">
            <gDNA_exon_boundary e_start="11099" e_stop="10410" e_length="690"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12851" stop="12818"/>
              <exon start="12699" stop="12518"/>
              <exon start="11851" stop="11777"/>
              <exon start="11623" stop="11519"/>
              <exon start="11099" stop="10410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319143" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCCTTACTGATGTGTCTGGCTATGATCGAATGA : TTTTGTGATAGGTGTATCCCGCTCAAATTCCAGACCTTTCATCTGAAGGACCTGTAGTCTTATCAGGTAGATACCAAGGAGTGTTTCCTGAGATGCTAAAAGCTAAAGGAATATTAACAGACATGAGTAATTTCTCGGTGGAGCTGAAAGGTTTCAAGTCCAAAGCCATACCTCTTGACAAG : GCAAGGGTGAAGCAGCAGATTGAAATACTCACAGCTCAGGCATGGTTTACACAAAATAAGGATCTTGAAAAAAAG : ATAGCAAAAATGAGTATACAAGACGCCGTCATCTCTGAGTATACACGCATGGCATTGGTGGAGGCGGAAAAAGTGAAAATCATTAAGTCAACCACAAAGAGGAAG : GTTCATTGTGATGATGAGAAGATAGAAGAACGCTTAATACAGAAGACAATATTACTACAATACCCAGGCTTCGGTTTTGGTAATCTCACTGCTACAATTGAGAATATTCCTCCTGGAGCCATCGATAAAGAGGACGAAGCAGAGATTATTGCAAAAGCAACGTCTAATTGTTTTGGGAAGTTGTGTGGTCTATGCTGCTGTTGCAGTTGCTGCATTACAGCGTGTTCGAATATGAATCATCAGTGTGCAATTGCACTCACACAATGTCTAGGTGCCTTTGGATGTTTAGGTTGCTTCGCTTATTGTCAATACTGCTGTTGTGAAAATCATAAATAAAAAAAAAAGGGCAGCTCGATGGACTAAGCTCCCACTATACGCGGGGTTCGGAGAATGGACCGGACCACAAGAGTCTGTTGTGGAGATAATCAATGAGAAGAAAATTACAACTACTCCTACAACTTCAACTTTCTCCCCATGATTTTGTGTCAACTAATGACAGATTATAAAGTTAGTTGATAGTGAACATATTCATGGTTCTTTTTTTATCCTCTCCCCATATTTTTGTATAATTATTTTTACAATATTTTTCAATAGATACATATTTTTTTCTAAGAAGTTGATCATCAATTTGTAAATAATTGTATTCAATTGTTTTTGAATGTTTTTTATTGGAGAGAAGAAAATTCCTTA</gDNA_template>
            <first_frame> L  L  T  D  V  S  G  Y  D  R  M   : I  L  *  *  V  Y  P  A  Q  I  P  D  L  S  S  E  G  P  V  V  L  S  G  R  Y  Q  G  V  F  P  E  M  L  K  A  K  G  I  L  T  D  M  S  N  F  S  V  E  L  K  G  F  K  S  K  A  I  P  L  D  K  :  A  R  V  K  Q  Q  I  E  I  L  T  A  Q  A  W  F  T  Q  N  K  D  L  E  K  K  :  I  A  K  M  S  I  Q  D  A  V  I  S  E  Y  T  R  M  A  L  V  E  A  E  K  V  K  I  I  K  S  T  T  K  R  K  :  V  H  C  D  D  E  K  I  E  E  R  L  I  Q  K  T  I  L  L  Q  Y  P  G  F  G  F  G  N  L  T  A  T  I  E  N  I  P  P  G  A  I  D  K  E  D  E  A  E  I  I  A  K  A  T  S  N  C  F  G  K  L  C  G  L  C  C  C  C  S  C  C  I  T  A  C  S  N  M  N  H  Q  C  A  I  A  L  T  Q  C  L  G  A  F  G  C  L  G  C  F  A  Y  C  Q  Y  C  C  C  E  N  H  K  *  K  K  K  G  S  S  M  D  *  A  P  T  I  R  G  V  R  R  M  D  R  T  T  R  V  C  C  G  D  N  Q  *  E  E  N  Y  N  Y  S  Y  N  F  N  F  L  P  M  I  L  C  Q  L  M  T  D  Y  K  V  S  *  *  *  T  Y  S  W  F  F  F  Y  P  L  P  I  F  L  Y  N  Y  F  Y  N  I  F  Q  *  I  H  I  F  F  *  E  V  D  H  Q  F  V  N  N  C  I  Q  L  F  L  N  V  F  Y  W  R  E  E  N  S  L </first_frame>
            <second_frame>  S  L  L  M  C  L  A  M  I  E  *  :  F  C  D  R  C  I  P  L  K  F  Q  T  F  H  L  K  D  L  *  S  Y  Q  V  D  T  K  E  C  F  L  R  C  *  K  L  K  E  Y  *  Q  T  *  V  I  S  R  W  S  *  K  V  S  S  P  K  P  Y  L  L  T  R :   Q  G  *  S  S  R  L  K  Y  S  Q  L  R  H  G  L  H  K  I  R  I  L  K  K  R :   *  Q  K  *  V  Y  K  T  P  S  S  L  S  I  H  A  W  H  W  W  R  R  K  K  *  K  S  L  S  Q  P  Q  R  G  R :   F  I  V  M  M  R  R  *  K  N  A  *  Y  R  R  Q  Y  Y  Y  N  T  Q  A  S  V  L  V  I  S  L  L  Q  L  R  I  F  L  L  E  P  S  I  K  R  T  K  Q  R  L  L  Q  K  Q  R  L  I  V  L  G  S  C  V  V  Y  A  A  V  A  V  A  A  L  Q  R  V  R  I  *  I  I  S  V  Q  L  H  S  H  N  V  *  V  P  L  D  V  *  V  A  S  L  I  V  N  T  A  V  V  K  I  I  N  K  K  K  R  A  A  R  W  T  K  L  P  L  Y  A  G  F  G  E  W  T  G  P  Q  E  S  V  V  E  I  I  N  E  K  K  I  T  T  T  P  T  T  S  T  F  S  P  *  F  C  V  N  *  *  Q  I  I  K  L  V  D  S  E  H  I  H  G  S  F  F  I  L  S  P  Y  F  C  I  I  I  F  T  I  F  F  N  R  Y  I  F  F  S  K  K  L  I  I  N  L  *  I  I  V  F  N  C  F  *  M  F  F  I  G  E  K  K  I  P   </second_frame>
            <third_frame>   P  Y  *  C  V  W  L  *  S  N  D :   F  V  I  G  V  S  R  S  N  S  R  P  F  I  *  R  T  C  S  L  I  R  *  I  P  R  S  V  S  *  D  A  K  S  *  R  N  I  N  R  H  E  *  F  L  G  G  A  E  R  F  Q  V  Q  S  H  T  S  *  Q   : G  K  G  E  A  A  D  *  N  T  H  S  S  G  M  V  Y  T  K  *  G  S  *  K  K   : D  S  K  N  E  Y  T  R  R  R  H  L  *  V  Y  T  H  G  I  G  G  G  G  K  S  E  N  H  *  V  N  H  K  E  E   : G  S  L  *  *  *  E  D  R  R  T  L  N  T  E  D  N  I  T  T  I  P  R  L  R  F  W  *  S  H  C  Y  N  *  E  Y  S  S  W  S  H  R  *  R  G  R  S  R  D  Y  C  K  S  N  V  *  L  F  W  E  V  V  W  S  M  L  L  L  Q  L  L  H  Y  S  V  F  E  Y  E  S  S  V  C  N  C  T  H  T  M  S  R  C  L  W  M  F  R  L  L  R  L  L  S  I  L  L  L  *  K  S  *  I  K  K  K  G  Q  L  D  G  L  S  S  H  Y  T  R  G  S  E  N  G  P  D  H  K  S  L  L  W  R  *  S  M  R  R  K  L  Q  L  L  L  Q  L  Q  L  S  P  H  D  F  V  S  T  N  D  R  L  *  S  *  L  I  V  N  I  F  M  V  L  F  L  S  S  P  H  I  F  V  *  L  F  L  Q  Y  F  S  I  D  T  Y  F  F  L  R  S  *  S  S  I  C  K  *  L  Y  S  I  V  F  E  C  F  L  L  E  R  R  K  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0133N05.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12688" stop="12518"/>
                    <exon start="11851" stop="11777"/>
                    <exon start="11623" stop="11519"/>
                    <exon start="11099" stop="10764"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>684</number_coding_nucleotides>
                  <number_encoded_amino_acids>228</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYPAQIPDLSSEGPVVLSGRYQGVFPEMLKAKGILTDMSNFSVELKGFKSKAIPLDKARVKQQIEILTAQAWFTQNKDLEKKIAKMSIQDAVISEYTRMALVEAEKVKIIKSTTKRKVHCDDEKIEERLIQKTILLQYPGFGFGNLTATIENIPPGAIDKEDEAEIIAKATSNCFGKLCGLCCCCSCCITACSNMNHQCAIALTQCLGAFGCLGCFAYCQYCCCENHK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="21677" PGL_stop="19013"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21677" e_stop="21472"/>
            <exon e_start="21100" e_stop="20942"/>
            <exon e_start="20703" e_stop="20554"/>
            <exon e_start="20388" e_stop="20193"/>
            <exon e_start="19781" e_stop="19013"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.171" acc_prob="0.619" e_score="0.985"/>
          <exon-intron don_prob="0.793" acc_prob="0.993" e_score="0.987"/>
          <exon-intron don_prob="0.995" acc_prob="0.938" e_score="0.947"/>
          <exon-intron don_prob="0.943" acc_prob="0.894" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="21677" e_stop="21472" e_length="206"/>
          </exon>
          <intron i_serial="1" don_prob="0.171" acc_prob="0.619">
            <gDNA_intron_boundary i_start="21471" i_stop="21101" i_length="371"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="21100" e_stop="20942" e_length="159"/>
          </exon>
          <intron i_serial="2" don_prob="0.793" acc_prob="0.993">
            <gDNA_intron_boundary i_start="20941" i_stop="20704" i_length="238"/>
          </intron>
          <exon e_serial="3" e_score="0.947">
            <gDNA_exon_boundary e_start="20703" e_stop="20554" e_length="150"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.938">
            <gDNA_intron_boundary i_start="20553" i_stop="20389" i_length="165"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="20388" e_stop="20193" e_length="196"/>
          </exon>
          <intron i_serial="4" don_prob="0.943" acc_prob="0.894">
            <gDNA_intron_boundary i_start="20192" i_stop="19782" i_length="411"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="19781" e_stop="19013" e_length="769"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21677" stop="21472"/>
              <exon start="21100" stop="20942"/>
              <exon start="20703" stop="20554"/>
              <exon start="20388" stop="20377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20601" stop="20554"/>
              <exon start="20388" stop="20193"/>
              <exon start="19781" stop="19013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326016" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAAAATAATGTCCATTGTGGTGGAATGAGTTCAAGTCCAAACATCCCTAAGCTTCAAGGATGAAGGGAGGTTTGAAGGTGTCACAGATCTCTCTCATCCTGATCGGATTCGTGTGTGCTTCTGTTCTTCTTTTGGCATATGTGAAGAGCCTACTTCTTTCTTCTTCAGTACTACCTCAGAATCATGTCTTGCAGCTTTCTCCAG : ATCTTAGAGTGAAAGATGAAGAAGCTTTGGGAGAAGGAAGCGGATCGGAGCAATCACAAGACAGTGTTAACTTTGAATCTGAAAAATATCCTACTTATGCAAACTCTTCACCGGTGATTAAGGTGACTGAAGAGTTGATTACTCATGAAGAAAGAGGAG : GTATTGCTCCGAATATCACTGAAAAAGGAGATTCAAAAGATGTTTCAGACAAAAAAACTGGTTTAATAGAGCAGGAAATTGACGTTTCCACTGCTGTGAGTTCTGGGGGTGAACATAGTGACAATTTTACAGCAACCCCGGAAAGACAAG : ATTGCAACTTTGCTAAAGGCAGATGGGTCATAGATGATAGCCGACCTTTATATTCTGGATTTGGCTGTAAGCAATGGTTGTCATCTATGTGGGCTTGTCGCTTGACACAACGTACAGATTTTGAATATGAAAAGTTACGTTGGCGACCCAAAAATTGTGAGATGGAAGATTTTACTGGTGTTAAATTTCTGAAAAG : GATGCAAAACAAAACTCTGGCGTTTATCGGGGATTCGCTTGGTAGACAGCAATTTCAGTCACTTATGTGTATGATTAGTGGTGGAAAAGATAGACCTAATGTTCTTGATGTGGGGCATGAATATGGTCTAGTGCAATCTCGTGGTTCTGGTCGACCTGATGGATGGGCTTTTCGATTTCCAGACACCAAAACAACTATTCTTTATTATTGGTCTGCTAGTCTCTGTGACTTGACACCTATAAATCCATCTGATCCTGCTACTGATTACGCCATGCACCTGGACCGTCCTCCAGCATTTTTGAGTCATTTCCTTCCAAGGTTCGATGTCCTTGTTCTAAACACAGGACACCATTGGAATAGAGGAAAGCTTAAGGCCAATCGATGGGTCATGTATGTAGGTGGTGTCCCTAATACAAACCGGAAGATTGTGACTATAGGTGGTGCCAAGAATTTCACAATCCACAGTATTGTCAATTGGGTGAACTCACAGCTGCCAAAATACCCTCATGTAAAAGCATTCTATCGGACTATATCCCCCAGACATTTCTTTAACGGAGATTGGAACACAGGAGGTACATGTGACAACACTACACCACTTTCCGAAGGGAAGGAGGTTTTACAAGACGAATCAAGTGACTATGATGCAGCACGTGCTGTTAGAGGAACAGACGTTAAGCTTTTGGACATCACTGCTTTATCCCAGCTGAGAGATGAAGGTCATATATCTCGATACAGCATCAAAGCAACACCAGGTGTCCAGGATTGTCTA</gDNA_template>
            <first_frame> A  K  I  M  S  I  V  V  E  *  V  Q  V  Q  T  S  L  S  F  K  D  E  G  R  F  E  G  V  T  D  L  S  H  P  D  R  I  R  V  C  F  C  S  S  F  G  I  C  E  E  P  T  S  F  F  F  S  T  T  S  E  S  C  L  A  A  F  S  R :   S  *  S  E  R  *  R  S  F  G  R  R  K  R  I  G  A  I  T  R  Q  C  *  L  *  I  *  K  I  S  Y  L  C  K  L  F  T  G  D  *  G  D  *  R  V  D  Y  S  *  R  K  R  R :   Y  C  S  E  Y  H  *  K  R  R  F  K  R  C  F  R  Q  K  N  W  F  N  R  A  G  N  *  R  F  H  C  C  E  F  W  G  *  T  *  *  Q  F  Y  S  N  P  G  K  T  R :   L  Q  L  C  *  R  Q  M  G  H  R  *  *  P  T  F  I  F  W  I  W  L  *  A  M  V  V  I  Y  V  G  L  S  L  D  T  T  Y  R  F  *  I  *  K  V  T  L  A  T  Q  K  L  *  D  G  R  F  Y  W  C  *  I  S  E  K  :  D  A  K  Q  N  S  G  V  Y  R  G  F  A  W  *  T  A  I  S  V  T  Y  V  Y  D  *  W  W  K  R  *  T  *  C  S  *  C  G  A  *  I  W  S  S  A  I  S  W  F  W  S  T  *  W  M  G  F  S  I  S  R  H  Q  N  N  Y  S  L  L  L  V  C  *  S  L  *  L  D  T  Y  K  S  I  *  S  C  Y  *  L  R  H  A  P  G  P  S  S  S  I  F  E  S  F  P  S  K  V  R  C  P  C  S  K  H  R  T  P  L  E  *  R  K  A  *  G  Q  S  M  G  H  V  C  R  W  C  P  *  Y  K  P  E  D  C  D  Y  R  W  C  Q  E  F  H  N  P  Q  Y  C  Q  L  G  E  L  T  A  A  K  I  P  S  C  K  S  I  L  S  D  Y  I  P  Q  T  F  L  *  R  R  L  E  H  R  R  Y  M  *  Q  H  Y  T  T  F  R  R  E  G  G  F  T  R  R  I  K  *  L  *  C  S  T  C  C  *  R  N  R  R  *  A  F  G  H  H  C  F  I  P  A  E  R  *  R  S  Y  I  S  I  Q  H  Q  S  N  T  R  C  P  G  L  S  </first_frame>
            <second_frame>  Q  K  *  C  P  L  W  W  N  E  F  K  S  K  H  P  *  A  S  R  M  K  G  G  L  K  V  S  Q  I  S  L  I  L  I  G  F  V  C  A  S  V  L  L  L  A  Y  V  K  S  L  L  L  S  S  S  V  L  P  Q  N  H  V  L  Q  L  S  P   : D  L  R  V  K  D  E  E  A  L  G  E  G  S  G  S  E  Q  S  Q  D  S  V  N  F  E  S  E  K  Y  P  T  Y  A  N  S  S  P  V  I  K  V  T  E  E  L  I  T  H  E  E  R  G   : G  I  A  P  N  I  T  E  K  G  D  S  K  D  V  S  D  K  K  T  G  L  I  E  Q  E  I  D  V  S  T  A  V  S  S  G  G  E  H  S  D  N  F  T  A  T  P  E  R  Q   : D  C  N  F  A  K  G  R  W  V  I  D  D  S  R  P  L  Y  S  G  F  G  C  K  Q  W  L  S  S  M  W  A  C  R  L  T  Q  R  T  D  F  E  Y  E  K  L  R  W  R  P  K  N  C  E  M  E  D  F  T  G  V  K  F  L  K  R :   M  Q  N  K  T  L  A  F  I  G  D  S  L  G  R  Q  Q  F  Q  S  L  M  C  M  I  S  G  G  K  D  R  P  N  V  L  D  V  G  H  E  Y  G  L  V  Q  S  R  G  S  G  R  P  D  G  W  A  F  R  F  P  D  T  K  T  T  I  L  Y  Y  W  S  A  S  L  C  D  L  T  P  I  N  P  S  D  P  A  T  D  Y  A  M  H  L  D  R  P  P  A  F  L  S  H  F  L  P  R  F  D  V  L  V  L  N  T  G  H  H  W  N  R  G  K  L  K  A  N  R  W  V  M  Y  V  G  G  V  P  N  T  N  R  K  I  V  T  I  G  G  A  K  N  F  T  I  H  S  I  V  N  W  V  N  S  Q  L  P  K  Y  P  H  V  K  A  F  Y  R  T  I  S  P  R  H  F  F  N  G  D  W  N  T  G  G  T  C  D  N  T  T  P  L  S  E  G  K  E  V  L  Q  D  E  S  S  D  Y  D  A  A  R  A  V  R  G  T  D  V  K  L  L  D  I  T  A  L  S  Q  L  R  D  E  G  H  I  S  R  Y  S  I  K  A  T  P  G  V  Q  D  C  L </second_frame>
            <third_frame>   K  N  N  V  H  C  G  G  M  S  S  S  P  N  I  P  K  L  Q  G  *  R  E  V  *  R  C  H  R  S  L  S  S  *  S  D  S  C  V  L  L  F  F  F  W  H  M  *  R  A  Y  F  F  L  L  Q  Y  Y  L  R  I  M  S  C  S  F  L  Q  :  I  L  E  *  K  M  K  K  L  W  E  K  E  A  D  R  S  N  H  K  T  V  L  T  L  N  L  K  N  I  L  L  M  Q  T  L  H  R  *  L  R  *  L  K  S  *  L  L  M  K  K  E  E  :  V  L  L  R  I  S  L  K  K  E  I  Q  K  M  F  Q  T  K  K  L  V  *  *  S  R  K  L  T  F  P  L  L  *  V  L  G  V  N  I  V  T  I  L  Q  Q  P  R  K  D  K  :  I  A  T  L  L  K  A  D  G  S  *  M  I  A  D  L  Y  I  L  D  L  A  V  S  N  G  C  H  L  C  G  L  V  A  *  H  N  V  Q  I  L  N  M  K  S  Y  V  G  D  P  K  I  V  R  W  K  I  L  L  V  L  N  F  *  K   : G  C  K  T  K  L  W  R  L  S  G  I  R  L  V  D  S  N  F  S  H  L  C  V  *  L  V  V  E  K  I  D  L  M  F  L  M  W  G  M  N  M  V  *  C  N  L  V  V  L  V  D  L  M  D  G  L  F  D  F  Q  T  P  K  Q  L  F  F  I  I  G  L  L  V  S  V  T  *  H  L  *  I  H  L  I  L  L  L  I  T  P  C  T  W  T  V  L  Q  H  F  *  V  I  S  F  Q  G  S  M  S  L  F  *  T  Q  D  T  I  G  I  E  E  S  L  R  P  I  D  G  S  C  M  *  V  V  S  L  I  Q  T  G  R  L  *  L  *  V  V  P  R  I  S  Q  S  T  V  L  S  I  G  *  T  H  S  C  Q  N  T  L  M  *  K  H  S  I  G  L  Y  P  P  D  I  S  L  T  E  I  G  T  Q  E  V  H  V  T  T  L  H  H  F  P  K  G  R  R  F  Y  K  T  N  Q  V  T  M  M  Q  H  V  L  L  E  E  Q  T  L  S  F  W  T  S  L  L  Y  P  S  *  E  M  K  V  I  Y  L  D  T  A  S  K  Q  H  Q  V  S  R  I  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0133N05.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21625" stop="21472"/>
                    <exon start="21100" stop="20942"/>
                    <exon start="20703" stop="20554"/>
                    <exon start="20388" stop="20193"/>
                    <exon start="19781" stop="19013"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1428</number_coding_nucleotides>
                  <number_encoded_amino_acids>476</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASRMKGGLKVSQISLILIGFVCASVLLLAYVKSLLLSSSVLPQNHVLQLSPDLRVKDEEALGEGSGSEQSQDSVNFESEKYPTYANSSPVIKVTEELITHEERGGIAPNITEKGDSKDVSDKKTGLIEQEIDVSTAVSSGGEHSDNFTATPERQDCNFAKGRWVIDDSRPLYSGFGCKQWLSSMWACRLTQRTDFEYEKLRWRPKNCEMEDFTGVKFLKRMQNKTLAFIGDSLGRQQFQSLMCMISGGKDRPNVLDVGHEYGLVQSRGSGRPDGWAFRFPDTKTTILYYWSASLCDLTPINPSDPATDYAMHLDRPPAFLSHFLPRFDVLVLNTGHHWNRGKLKANRWVMYVGGVPNTNRKIVTIGGAKNFTIHSIVNWVNSQLPKYPHVKAFYRTISPRHFFNGDWNTGGTCDNTTPLSEGKEVLQDESSDYDAARAVRGTDVKLLDITALSQLRDEGHISRYSIKATPGVQDCL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="26083" PGL_stop="30463"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26083" e_stop="26220"/>
            <exon e_start="26368" e_stop="26462"/>
            <exon e_start="27132" e_stop="27213"/>
            <exon e_start="27679" e_stop="27775"/>
            <exon e_start="28147" e_stop="28205"/>
            <exon e_start="28338" e_stop="28420"/>
            <exon e_start="29174" e_stop="29269"/>
            <exon e_start="29754" e_stop="29813"/>
            <exon e_start="30157" e_stop="30463"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.169" acc_prob="0.921" e_score="1.000"/>
          <exon-intron don_prob="0.891" acc_prob="0.734" e_score="1.000"/>
          <exon-intron don_prob="0.712" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.904" acc_prob="0.816" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26083" e_stop="26220" e_length="138"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="26221" i_stop="26367" i_length="147"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26368" e_stop="26462" e_length="95"/>
          </exon>
          <intron i_serial="2" don_prob="0.958" acc_prob="0.964">
            <gDNA_intron_boundary i_start="26463" i_stop="27131" i_length="669"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27132" e_stop="27213" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="0.169" acc_prob="0.921">
            <gDNA_intron_boundary i_start="27214" i_stop="27678" i_length="465"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27679" e_stop="27775" e_length="97"/>
          </exon>
          <intron i_serial="4" don_prob="0.891" acc_prob="0.734">
            <gDNA_intron_boundary i_start="27776" i_stop="28146" i_length="371"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="28147" e_stop="28205" e_length="59"/>
          </exon>
          <intron i_serial="5" don_prob="0.712" acc_prob="0.992">
            <gDNA_intron_boundary i_start="28206" i_stop="28337" i_length="132"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="28338" e_stop="28420" e_length="83"/>
          </exon>
          <intron i_serial="6" don_prob="0.985" acc_prob="1.000">
            <gDNA_intron_boundary i_start="28421" i_stop="29173" i_length="753"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="29174" e_stop="29269" e_length="96"/>
          </exon>
          <intron i_serial="7" don_prob="0.904" acc_prob="0.816">
            <gDNA_intron_boundary i_start="29270" i_stop="29753" i_length="484"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="29754" e_stop="29813" e_length="60"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="29814" i_stop="30156" i_length="343"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="30157" e_stop="30463" e_length="307"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26083" stop="26220"/>
              <exon start="26368" stop="26462"/>
              <exon start="27132" stop="27213"/>
              <exon start="27679" stop="27775"/>
              <exon start="28147" stop="28205"/>
              <exon start="28338" stop="28420"/>
              <exon start="29174" stop="29269"/>
              <exon start="29754" stop="29813"/>
              <exon start="30157" stop="30463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315855" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTAAATCAGTTCGACAAAAATTTTCAGATCGAACTGAGAAAATCAAACCGTAGAATCGAACAATGAGTCGAGGAAGTGGAGGCGGATACGATCGTCACATTACGATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTCG : AATATGCTTTTAAGGCTGTGAAGGCAGCTGGAATCACATCTATTGGTGTCCGTGGAAAGGACTCTGTTTGTGTTGTTACTCAGAAGAAAGTCCCT : GACAAGCTATTGGATCAGACCAGTGTATCCCATTTGTTCCCAATTACCAAGTATCTTGGACTATTGGCTACTGGCATGACAG : CTGATGCAAGAACTTTGGTTCAACAAGCTCGAAATGAAGCTGCTGAGTTTCGCTTTAAATATGGTTATGAAATGCCAGCAGATGTACTGTCTAAATG : GATCGCGGACAAGTCCCAGGTTTACACACAGCATGCCTATATGAGACCCCTTGGAGTAG : TTGCTATGATTTTGGGCATTGATGAGGAGAAAGGGCCCCAGCTCTTCAAATGTGACCCTGCTGGTCATTTTTTTGGTCATAAG : GCTACAAGTGCCGGATCTAAAGAGCAAGAGGCAATTAACTTTTTGGAGAAGAAAATGAAAAATAACCCTGCGTTCTCCTATGAGGAAACTGTTCAG : ACCACTATTTCTGCTCTTCAATCTGTTCTGCAAGAAGATTTCAAGGCCAGTGAAATTGAG : GTTGGTGTTGTGAGAAAAGAAGATCCCGTCTTTAGAGTGTTAACTACTGAGGAAATCGACGAGCACTTAACAGCCATCAGTGAGCGTGACTGATTAGCCACATGATACACAGTCCGTTTTCTGTTAGAAATGTATGTTTTGCTATCAAGACTTGCAAAAGAGATCCCATTTGATTGTTAGTTGCTATCAATCCTTCTGCATATGCTGATAAATGAGTTTCTATTTGTCGAATGTAACATTTCATGGGATCTTCTTAGTTTCAACAAAACGTTTGAATCCTTCTATCATTATCTATCTACGATCTTTT</gDNA_template>
            <first_frame> L  N  Q  F  D  K  N  F  Q  I  E  L  R  K  S  N  R  R  I  E  Q  *  V  E  E  V  E  A  D  T  I  V  T  L  R  S  S  H  R  K  V  V  S  F  K  S  :  N  M  L  L  R  L  *  R  Q  L  E  S  H  L  L  V  S  V  E  R  T  L  F  V  L  L  L  R  R  K  S  L :   T  S  Y  W  I  R  P  V  Y  P  I  C  S  Q  L  P  S  I  L  D  Y  W  L  L  A  *  Q  :  L  M  Q  E  L  W  F  N  K  L  E  M  K  L  L  S  F  A  L  N  M  V  M  K  C  Q  Q  M  Y  C  L  N   : G  S  R  T  S  P  R  F  T  H  S  M  P  I  *  D  P  L  E  *  :  L  L  *  F  W  A  L  M  R  R  K  G  P  S  S  S  N  V  T  L  L  V  I  F  L  V  I  R :   L  Q  V  P  D  L  K  S  K  R  Q  L  T  F  W  R  R  K  *  K  I  T  L  R  S  P  M  R  K  L  F  R :   P  L  F  L  L  F  N  L  F  C  K  K  I  S  R  P  V  K  L  R :   L  V  L  *  E  K  K  I  P  S  L  E  C  *  L  L  R  K  S  T  S  T  *  Q  P  S  V  S  V  T  D  *  P  H  D  T  Q  S  V  F  C  *  K  C  M  F  C  Y  Q  D  L  Q  K  R  S  H  L  I  V  S  C  Y  Q  S  F  C  I  C  *  *  M  S  F  Y  L  S  N  V  T  F  H  G  I  F  L  V  S  T  K  R  L  N  P  S  I  I  I  Y  L  R  S  F </first_frame>
            <second_frame>  *  I  S  S  T  K  I  F  R  S  N  *  E  N  Q  T  V  E  S  N  N  E  S  R  K  W  R  R  I  R  S  S  H  Y  D  L  L  T  G  R  S  S  L  S  S  R :   I  C  F  *  G  C  E  G  S  W  N  H  I  Y  W  C  P  W  K  G  L  C  L  C  C  Y  S  E  E  S  P   : *  Q  A  I  G  S  D  Q  C  I  P  F  V  P  N  Y  Q  V  S  W  T  I  G  Y  W  H  D  S :   *  C  K  N  F  G  S  T  S  S  K  *  S  C  *  V  S  L  *  I  W  L  *  N  A  S  R  C  T  V  *  M  :  D  R  G  Q  V  P  G  L  H  T  A  C  L  Y  E  T  P  W  S  S :   C  Y  D  F  G  H  *  *  G  E  R  A  P  A  L  Q  M  *  P  C  W  S  F  F  W  S  *   : G  Y  K  C  R  I  *  R  A  R  G  N  *  L  F  G  E  E  N  E  K  *  P  C  V  L  L  *  G  N  C  S   : D  H  Y  F  C  S  S  I  C  S  A  R  R  F  Q  G  Q  *  N  *   : G  W  C  C  E  K  R  R  S  R  L  *  S  V  N  Y  *  G  N  R  R  A  L  N  S  H  Q  *  A  *  L  I  S  H  M  I  H  S  P  F  S  V  R  N  V  C  F  A  I  K  T  C  K  R  D  P  I  *  L  L  V  A  I  N  P  S  A  Y  A  D  K  *  V  S  I  C  R  M  *  H  F  M  G  S  S  *  F  Q  Q  N  V  *  I  L  L  S  L  S  I  Y  D  L   </second_frame>
            <third_frame>   K  S  V  R  Q  K  F  S  D  R  T  E  K  I  K  P  *  N  R  T  M  S  R  G  S  G  G  G  Y  D  R  H  I  T  I  F  S  P  E  G  R  L  F  Q  V   : E  Y  A  F  K  A  V  K  A  A  G  I  T  S  I  G  V  R  G  K  D  S  V  C  V  V  T  Q  K  K  V  P  :  D  K  L  L  D  Q  T  S  V  S  H  L  F  P  I  T  K  Y  L  G  L  L  A  T  G  M  T   : A  D  A  R  T  L  V  Q  Q  A  R  N  E  A  A  E  F  R  F  K  Y  G  Y  E  M  P  A  D  V  L  S  K  W :   I  A  D  K  S  Q  V  Y  T  Q  H  A  Y  M  R  P  L  G  V   : V  A  M  I  L  G  I  D  E  E  K  G  P  Q  L  F  K  C  D  P  A  G  H  F  F  G  H  K  :  A  T  S  A  G  S  K  E  Q  E  A  I  N  F  L  E  K  K  M  K  N  N  P  A  F  S  Y  E  E  T  V  Q  :  T  T  I  S  A  L  Q  S  V  L  Q  E  D  F  K  A  S  E  I  E  :  V  G  V  V  R  K  E  D  P  V  F  R  V  L  T  T  E  E  I  D  E  H  L  T  A  I  S  E  R  D  *  L  A  T  *  Y  T  V  R  F  L  L  E  M  Y  V  L  L  S  R  L  A  K  E  I  P  F  D  C  *  L  L  S  I  L  L  H  M  L  I  N  E  F  L  F  V  E  C  N  I  S  W  D  L  L  S  F  N  K  T  F  E  S  F  Y  H  Y  L  S  T  I  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0133N05.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26136" stop="26220"/>
                    <exon start="26368" stop="26462"/>
                    <exon start="27132" stop="27213"/>
                    <exon start="27679" stop="27775"/>
                    <exon start="28147" stop="28205"/>
                    <exon start="28338" stop="28420"/>
                    <exon start="29174" stop="29269"/>
                    <exon start="29754" stop="29813"/>
                    <exon start="30157" stop="30249"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>747</number_coding_nucleotides>
                  <number_encoded_amino_acids>249</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRTMSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKLLDQTSVSHLFPITKYLGLLATGMTADARTLVQQARNEAAEFRFKYGYEMPADVLSKWIADKSQVYTQHAYMRPLGVVAMILGIDEEKGPQLFKCDPAGHFFGHKATSAGSKEQEAINFLEKKMKNNPAFSYEETVQTTISALQSVLQEDFKASEIEVGVVRKEDPVFRVLTTEEIDEHLTAISERD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="40866" PGL_stop="37610"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40866" e_stop="40689"/>
            <exon e_start="39846" e_stop="39796"/>
            <exon e_start="39673" e_stop="39614"/>
            <exon e_start="38033" e_stop="38002"/>
            <exon e_start="37918" e_stop="37652"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.972"/>
          <exon-intron don_prob="0.864" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.066" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.573" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="40866" e_stop="40689" e_length="178"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="40688" i_stop="39847" i_length="842"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39846" e_stop="39796" e_length="51"/>
          </exon>
          <intron i_serial="2" don_prob="0.864" acc_prob="0.999">
            <gDNA_intron_boundary i_start="39795" i_stop="39674" i_length="122"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="39673" e_stop="39614" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.066">
            <gDNA_intron_boundary i_start="39613" i_stop="38034" i_length="1580"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="38033" e_stop="38002" e_length="32"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.573">
            <gDNA_intron_boundary i_start="38001" i_stop="37919" i_length="83"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="37918" e_stop="37652" e_length="267"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40866" stop="40689"/>
              <exon start="39846" stop="39796"/>
              <exon start="39673" stop="39614"/>
              <exon start="38033" stop="38002"/>
              <exon start="37918" stop="37652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337659" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAAATAATTTTGAAAAATCTGTGAACTCTTCGAAGCTTAAAAATTCAATGGCGTCACCGGATACCGATGTGCCGATGGTTCCCGCCGGCGAGAGTTCAACCGGAGCTGGAACGTCTAACAAAAAGCCGAAGCGATTTGAGATCAAAAAGTGGAACGCCGTTTCTCTCTGGGCTTGGG : ATATTGTGGTAGATAATTGTGCCATCTGTAGGAATCACATCATGGATCTGT : GTATCGAGTGTCAAGCTAATCAAGCTAGCGCAACAAGTGAGGAATGCACAGTTGCTTGGG : GTGGCTCAAGACTCGTCAAGTGTGTCCACTTG : ATAACAGCGAGTGGGAGTTTCAGAAGTATGGTCACTAGAATTTACTGTTGGTGTACAGTGAATGAGAGGAGCTTCAAAACTATGGTCATTACAGTTTTTCTGTCATCGACGTTGAAAAGAACAATTCTGCTGCCTTATGTTCCTTTCGTTTTTGCTCTGCAAATATCCAAAGCAATGACTCGAACTATGTTTTTAATTGTCGCATGTCTGTTTTAGGTTGCCTCAAAAGAATGAAATGTGTTTGGAGACTAACCATTTCTTATTCGA</gDNA_template>
            <first_frame> R  N  N  F  E  K  S  V  N  S  S  K  L  K  N  S  M  A  S  P  D  T  D  V  P  M  V  P  A  G  E  S  S  T  G  A  G  T  S  N  K  K  P  K  R  F  E  I  K  K  W  N  A  V  S  L  W  A  W   : D  I  V  V  D  N  C  A  I  C  R  N  H  I  M  D  L   : C  I  E  C  Q  A  N  Q  A  S  A  T  S  E  E  C  T  V  A  W   : G  G  S  R  L  V  K  C  V  H  L  :  I  T  A  S  G  S  F  R  S  M  V  T  R  I  Y  C  W  C  T  V  N  E  R  S  F  K  T  M  V  I  T  V  F  L  S  S  T  L  K  R  T  I  L  L  P  Y  V  P  F  V  F  A  L  Q  I  S  K  A  M  T  R  T  M  F  L  I  V  A  C  L  F  *  V  A  S  K  E  *  N  V  F  G  D  *  P  F  L  I  R </first_frame>
            <second_frame>  E  I  I  L  K  N  L  *  T  L  R  S  L  K  I  Q  W  R  H  R  I  P  M  C  R  W  F  P  P  A  R  V  Q  P  E  L  E  R  L  T  K  S  R  S  D  L  R  S  K  S  G  T  P  F  L  S  G  L  G  :  I  L  W  *  I  I  V  P  S  V  G  I  T  S  W  I  C  :  V  S  S  V  K  L  I  K  L  A  Q  Q  V  R  N  A  Q  L  L  G  :  V  A  Q  D  S  S  S  V  S  T  * :   *  Q  R  V  G  V  S  E  V  W  S  L  E  F  T  V  G  V  Q  *  M  R  G  A  S  K  L  W  S  L  Q  F  F  C  H  R  R  *  K  E  Q  F  C  C  L  M  F  L  S  F  L  L  C  K  Y  P  K  Q  *  L  E  L  C  F  *  L  S  H  V  C  F  R  L  P  Q  K  N  E  M  C  L  E  T  N  H  F  L  F   </second_frame>
            <third_frame>   K  *  F  *  K  I  C  E  L  F  E  A  *  K  F  N  G  V  T  G  Y  R  C  A  D  G  S  R  R  R  E  F  N  R  S  W  N  V  *  Q  K  A  E  A  I  *  D  Q  K  V  E  R  R  F  S  L  G  L  G :   Y  C  G  R  *  L  C  H  L  *  E  S  H  H  G  S  V :   Y  R  V  S  S  *  S  S  *  R  N  K  *  G  M  H  S  C  L  G :   W  L  K  T  R  Q  V  C  P  L   : D  N  S  E  W  E  F  Q  K  Y  G  H  *  N  L  L  L  V  Y  S  E  *  E  E  L  Q  N  Y  G  H  Y  S  F  S  V  I  D  V  E  K  N  N  S  A  A  L  C  S  F  R  F  C  S  A  N  I  Q  S  N  D  S  N  Y  V  F  N  C  R  M  S  V  L  G  C  L  K  R  M  K  C  V  W  R  L  T  I  S  Y  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0133N05.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40866" stop="40689"/>
                    <exon start="39846" stop="39796"/>
                    <exon start="39673" stop="39614"/>
                    <exon start="38033" stop="38002"/>
                    <exon start="37918" stop="37703"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>534</number_coding_nucleotides>
                  <number_encoded_amino_acids>178</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNNFEKSVNSSKLKNSMASPDTDVPMVPAGESSTGAGTSNKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGGSRLVKCVHLITASGSFRSMVTRIYCWCTVNERSFKTMVITVFLSSTLKRTILLPYVPFVFALQISKAMTRTMFLIVACLF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="40862" e_stop="40689"/>
            <exon e_start="39846" e_stop="39796"/>
            <exon e_start="39673" e_stop="39614"/>
            <exon e_start="38073" e_stop="38002"/>
            <exon e_start="37918" e_stop="37610"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.864" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.573" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40862" e_stop="40689" e_length="174"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="40688" i_stop="39847" i_length="842"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39846" e_stop="39796" e_length="51"/>
          </exon>
          <intron i_serial="2" don_prob="0.864" acc_prob="0.999">
            <gDNA_intron_boundary i_start="39795" i_stop="39674" i_length="122"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="39673" e_stop="39614" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.998">
            <gDNA_intron_boundary i_start="39613" i_stop="38074" i_length="1540"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="38073" e_stop="38002" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.573">
            <gDNA_intron_boundary i_start="38001" i_stop="37919" i_length="83"/>
          </intron>
          <exon e_serial="5" e_score="0.987">
            <gDNA_exon_boundary e_start="37918" e_stop="37610" e_length="309"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40862" stop="40689"/>
              <exon start="39846" stop="39796"/>
              <exon start="39673" stop="39614"/>
              <exon start="38073" stop="38002"/>
              <exon start="37918" stop="37610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322696" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAATTTTGAAAAATCTGTGAACTCTTCGAAGCTTAAAAATTCAATGGCGTCACCGGATACCGATGTGCCGATGGTTCCCGCCGGCGAGAGTTCAACCGGAGCTGGAACGTCTAACAAAAAGCCGAAGCGATTTGAGATCAAAAAGTGGAACGCCGTTTCTCTCTGGGCTTGGG : ATATTGTGGTAGATAATTGTGCCATCTGTAGGAATCACATCATGGATCTGT : GTATCGAGTGTCAAGCTAATCAAGCTAGCGCAACAAGTGAGGAATGCACAGTTGCTTGGG : GTGTTTGCAACCATGCATTCCACTTCCATTGCATTAGCAGGTGGCTCAAGACTCGTCAAGTGTGTCCACTTG : ATAACAGCGAGTGGGAGTTTCAGAAGTATGGTCACTAGAATTTACTGTTGGTGTACAGTGAATGAGAGGAGCTTCAAAACTATGGTCATTACAGTTTTTCTGTCATCGACGTTGAAAAGAACAATTCTGCTGCCTTATGTTCCTTTCGTTTTTGCTCTGCAAATATCCAAAGCAATGACTCGAACTATGTTTTTAATTGTCGCATGTCTGTTTTAGGTTGCCTCAAAAGAATGAAATGTGTTTGGAGACTAACCATTTCTTATTCGAATTTACATATTTTCTTTGTTCTTCAGTGTTCATTACTATTTG</gDNA_template>
            <first_frame> I  I  L  K  N  L  *  T  L  R  S  L  K  I  Q  W  R  H  R  I  P  M  C  R  W  F  P  P  A  R  V  Q  P  E  L  E  R  L  T  K  S  R  S  D  L  R  S  K  S  G  T  P  F  L  S  G  L  G  :  I  L  W  *  I  I  V  P  S  V  G  I  T  S  W  I  C  :  V  S  S  V  K  L  I  K  L  A  Q  Q  V  R  N  A  Q  L  L  G  :  V  F  A  T  M  H  S  T  S  I  A  L  A  G  G  S  R  L  V  K  C  V  H  L  :  I  T  A  S  G  S  F  R  S  M  V  T  R  I  Y  C  W  C  T  V  N  E  R  S  F  K  T  M  V  I  T  V  F  L  S  S  T  L  K  R  T  I  L  L  P  Y  V  P  F  V  F  A  L  Q  I  S  K  A  M  T  R  T  M  F  L  I  V  A  C  L  F  *  V  A  S  K  E  *  N  V  F  G  D  *  P  F  L  I  R  I  Y  I  F  S  L  F  F  S  V  H  Y  Y  L </first_frame>
            <second_frame>  *  F  *  K  I  C  E  L  F  E  A  *  K  F  N  G  V  T  G  Y  R  C  A  D  G  S  R  R  R  E  F  N  R  S  W  N  V  *  Q  K  A  E  A  I  *  D  Q  K  V  E  R  R  F  S  L  G  L  G :   Y  C  G  R  *  L  C  H  L  *  E  S  H  H  G  S  V :   Y  R  V  S  S  *  S  S  *  R  N  K  *  G  M  H  S  C  L  G :   C  L  Q  P  C  I  P  L  P  L  H  *  Q  V  A  Q  D  S  S  S  V  S  T  * :   *  Q  R  V  G  V  S  E  V  W  S  L  E  F  T  V  G  V  Q  *  M  R  G  A  S  K  L  W  S  L  Q  F  F  C  H  R  R  *  K  E  Q  F  C  C  L  M  F  L  S  F  L  L  C  K  Y  P  K  Q  *  L  E  L  C  F  *  L  S  H  V  C  F  R  L  P  Q  K  N  E  M  C  L  E  T  N  H  F  L  F  E  F  T  Y  F  L  C  S  S  V  F  I  T  I   </second_frame>
            <third_frame>   N  F  E  K  S  V  N  S  S  K  L  K  N  S  M  A  S  P  D  T  D  V  P  M  V  P  A  G  E  S  S  T  G  A  G  T  S  N  K  K  P  K  R  F  E  I  K  K  W  N  A  V  S  L  W  A  W   : D  I  V  V  D  N  C  A  I  C  R  N  H  I  M  D  L   : C  I  E  C  Q  A  N  Q  A  S  A  T  S  E  E  C  T  V  A  W   : G  V  C  N  H  A  F  H  F  H  C  I  S  R  W  L  K  T  R  Q  V  C  P  L   : D  N  S  E  W  E  F  Q  K  Y  G  H  *  N  L  L  L  V  Y  S  E  *  E  E  L  Q  N  Y  G  H  Y  S  F  S  V  I  D  V  E  K  N  N  S  A  A  L  C  S  F  R  F  C  S  A  N  I  Q  S  N  D  S  N  Y  V  F  N  C  R  M  S  V  L  G  C  L  K  R  M  K  C  V  W  R  L  T  I  S  Y  S  N  L  H  I  F  F  V  L  Q  C  S  L  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0133N05.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40860" stop="40689"/>
                    <exon start="39846" stop="39796"/>
                    <exon start="39673" stop="39614"/>
                    <exon start="38073" stop="38002"/>
                    <exon start="37918" stop="37881"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFEKSVNSSKLKNSMASPDTDVPMVPAGESSTGAGTSNKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0133N05.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39834" stop="39796"/>
                    <exon start="39673" stop="39614"/>
                    <exon start="38073" stop="38002"/>
                    <exon start="37918" stop="37703"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>384</number_coding_nucleotides>
                  <number_encoded_amino_acids>128</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIVPSVGITSWICVSSVKLIKLAQQVRNAQLLGVFATMHSTSIALAGGSRLVKCVHLITASGSFRSMVTRIYCWCTVNERSFKTMVITVFLSSTLKRTILLPYVPFVFALQISKAMTRTMFLIVACLF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="49737" PGL_stop="51624"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49737" e_stop="50116"/>
            <exon e_start="51193" e_stop="51624"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.828" e_score="0.997"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="49737" e_stop="50116" e_length="380"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.828">
            <gDNA_intron_boundary i_start="50117" i_stop="51192" i_length="1076"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="51193" e_stop="51624" e_length="432"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49737" stop="50116"/>
              <exon start="51193" stop="51624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333141" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGTGCGCGTATTTCATCAAAGGACAATAGTACGCCCTCCTTTGATGCAGCGCATGGAAAGGATATCTGGAAGTACGCGGAAGCTGACTCTGGACTTAGTAACCTCCTGAATAACGCAATGGCGTGCGATGCTAAAGTTGCAGTATCAGCGATTATCGACGGTTGCCCGGAGATATTCGAGGGGGTGAACACAATGGTTGATGTTGGTGGTGGTGATGGAACAACACTAAGATTATTGGTGGAGGCTTTTCCTTGGATTAATGGGATTAATTTAGATCTTCCTCATGTTGCTTCTGTTGCACCTCATGCTATTGGTGTTGTACATTTTGGAGGTGACATGTTTAATTATGTCCCCAAAGCTGATGCTGCCTTCCTAATG : TGGGTTTTACATGATTGGGGAGATGAAGAATGTATACAAATATTAACAAAGTGTAGAGAAGCAATTCCAAAAGACAAAGGGAAAGTGATAATATTGGAAGCAATAATTGGTGAAAAAGAAGAAAATAATATTATTAGAGGATCAAATAATGAGAAGCTCAAGGATGTTGGTTTAATGTTGGATATGGTGATGATGGCTCACACAAGCAATGGAAAAGAGAGAACATCTAAAGAATGGGCTTATGTTTTGAATGAAGCTGGATTTGGTAGACACACTATTAGTCACATTAATGCTGTTCAATCTGTTATTCAAGCTTATCCTTCTTGATTTTTATCGTGTTCGGAGACGGATTTAGTGTGTAAGTTATGTCGATTTATGTTTGAGGTTTTTAATAAGCATTGGATACGTATGTTATATTTTTGAAATTACTAA</gDNA_template>
            <first_frame> L  V  R  V  F  H  Q  R  T  I  V  R  P  P  L  M  Q  R  M  E  R  I  S  G  S  T  R  K  L  T  L  D  L  V  T  S  *  I  T  Q  W  R  A  M  L  K  L  Q  Y  Q  R  L  S  T  V  A  R  R  Y  S  R  G  *  T  Q  W  L  M  L  V  V  V  M  E  Q  H  *  D  Y  W  W  R  L  F  L  G  L  M  G  L  I  *  I  F  L  M  L  L  L  L  H  L  M  L  L  V  L  Y  I  L  E  V  T  C  L  I  M  S  P  K  L  M  L  P  S  *  C :   G  F  Y  M  I  G  E  M  K  N  V  Y  K  Y  *  Q  S  V  E  K  Q  F  Q  K  T  K  G  K  *  *  Y  W  K  Q  *  L  V  K  K  K  K  I  I  L  L  E  D  Q  I  M  R  S  S  R  M  L  V  *  C  W  I  W  *  *  W  L  T  Q  A  M  E  K  R  E  H  L  K  N  G  L  M  F  *  M  K  L  D  L  V  D  T  L  L  V  T  L  M  L  F  N  L  L  F  K  L  I  L  L  D  F  Y  R  V  R  R  R  I  *  C  V  S  Y  V  D  L  C  L  R  F  L  I  S  I  G  Y  V  C  Y  I  F  E  I  T   </first_frame>
            <second_frame>  *  C  A  Y  F  I  K  G  Q  *  Y  A  L  L  *  C  S  A  W  K  G  Y  L  E  V  R  G  S  *  L  W  T  *  *  P  P  E  *  R  N  G  V  R  C  *  S  C  S  I  S  D  Y  R  R  L  P  G  D  I  R  G  G  E  H  N  G  *  C  W  W  W  *  W  N  N  T  K  I  I  G  G  G  F  S  L  D  *  W  D  *  F  R  S  S  S  C  C  F  C  C  T  S  C  Y  W  C  C  T  F  W  R  *  H  V  *  L  C  P  Q  S  *  C  C  L  P  N   : V  G  F  T  *  L  G  R  *  R  M  Y  T  N  I  N  K  V  *  R  S  N  S  K  R  Q  R  E  S  D  N  I  G  S  N  N  W  *  K  R  R  K  *  Y  Y  *  R  I  K  *  *  E  A  Q  G  C  W  F  N  V  G  Y  G  D  D  G  S  H  K  Q  W  K  R  E  N  I  *  R  M  G  L  C  F  E  *  S  W  I  W  *  T  H  Y  *  S  H  *  C  C  S  I  C  Y  S  S  L  S  F  L  I  F  I  V  F  G  D  G  F  S  V  *  V  M  S  I  Y  V  *  G  F  *  *  A  L  D  T  Y  V  I  F  L  K  L  L  </second_frame>
            <third_frame>   S  A  R  I  S  S  K  D  N  S  T  P  S  F  D  A  A  H  G  K  D  I  W  K  Y  A  E  A  D  S  G  L  S  N  L  L  N  N  A  M  A  C  D  A  K  V  A  V  S  A  I  I  D  G  C  P  E  I  F  E  G  V  N  T  M  V  D  V  G  G  G  D  G  T  T  L  R  L  L  V  E  A  F  P  W  I  N  G  I  N  L  D  L  P  H  V  A  S  V  A  P  H  A  I  G  V  V  H  F  G  G  D  M  F  N  Y  V  P  K  A  D  A  A  F  L  M  :  W  V  L  H  D  W  G  D  E  E  C  I  Q  I  L  T  K  C  R  E  A  I  P  K  D  K  G  K  V  I  I  L  E  A  I  I  G  E  K  E  E  N  N  I  I  R  G  S  N  N  E  K  L  K  D  V  G  L  M  L  D  M  V  M  M  A  H  T  S  N  G  K  E  R  T  S  K  E  W  A  Y  V  L  N  E  A  G  F  G  R  H  T  I  S  H  I  N  A  V  Q  S  V  I  Q  A  Y  P  S  *  F  L  S  C  S  E  T  D  L  V  C  K  L  C  R  F  M  F  E  V  F  N  K  H  W  I  R  M  L  Y  F  *  N  Y  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0133N05.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49739" stop="50116"/>
                    <exon start="51193" stop="51519"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>702</number_coding_nucleotides>
                  <number_encoded_amino_acids>234</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SARISSKDNSTPSFDAAHGKDIWKYAEADSGLSNLLNNAMACDAKVAVSAIIDGCPEIFEGVNTMVDVGGGDGTTLRLLVEAFPWINGINLDLPHVASVAPHAIGVVHFGGDMFNYVPKADAAFLMWVLHDWGDEECIQILTKCREAIPKDKGKVIILEAIIGEKEENNIIRGSNNEKLKDVGLMLDMVMMAHTSNGKERTSKEWAYVLNEAGFGRHTISHINAVQSVIQAYPS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="52535" PGL_stop="64276"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52535" e_stop="52678"/>
            <exon e_start="55558" e_stop="55645"/>
            <exon e_start="55738" e_stop="55842"/>
            <exon e_start="55998" e_stop="56047"/>
            <exon e_start="58677" e_stop="58749"/>
            <exon e_start="61856" e_stop="61940"/>
            <exon e_start="62235" e_stop="62297"/>
            <exon e_start="62844" e_stop="62903"/>
            <exon e_start="63087" e_stop="63179"/>
            <exon e_start="63691" e_stop="64276"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.168" acc_prob="0.723" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.650" e_score="1.000"/>
          <exon-intron don_prob="0.879" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.795" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52535" e_stop="52678" e_length="144"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="52679" i_stop="55557" i_length="2879"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55558" e_stop="55645" e_length="88"/>
          </exon>
          <intron i_serial="2" don_prob="0.168" acc_prob="0.723">
            <gDNA_intron_boundary i_start="55646" i_stop="55737" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55738" e_stop="55842" e_length="105"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="0.650">
            <gDNA_intron_boundary i_start="55843" i_stop="55997" i_length="155"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="55998" e_stop="56047" e_length="50"/>
          </exon>
          <intron i_serial="4" don_prob="0.879" acc_prob="0.999">
            <gDNA_intron_boundary i_start="56048" i_stop="58676" i_length="2629"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="58677" e_stop="58749" e_length="73"/>
          </exon>
          <intron i_serial="5" don_prob="0.933" acc_prob="0.999">
            <gDNA_intron_boundary i_start="58750" i_stop="61855" i_length="3106"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="61856" e_stop="61940" e_length="85"/>
          </exon>
          <intron i_serial="6" don_prob="0.939" acc_prob="0.977">
            <gDNA_intron_boundary i_start="61941" i_stop="62234" i_length="294"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="62235" e_stop="62297" e_length="63"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.965">
            <gDNA_intron_boundary i_start="62298" i_stop="62843" i_length="546"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="62844" e_stop="62903" e_length="60"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="0.983">
            <gDNA_intron_boundary i_start="62904" i_stop="63086" i_length="183"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="63087" e_stop="63179" e_length="93"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.795">
            <gDNA_intron_boundary i_start="63180" i_stop="63690" i_length="511"/>
          </intron>
          <exon e_serial="10" e_score="0.980">
            <gDNA_exon_boundary e_start="63691" e_stop="64276" e_length="586"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52535" stop="52678"/>
              <exon start="55558" stop="55645"/>
              <exon start="55738" stop="55842"/>
              <exon start="55998" stop="56047"/>
              <exon start="58677" stop="58749"/>
              <exon start="61856" stop="61940"/>
              <exon start="62235" stop="62297"/>
              <exon start="62844" stop="62903"/>
              <exon start="63087" stop="63179"/>
              <exon start="63691" stop="64276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326406" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTCGAAGTAATTTTTTTTGAAGAAACTGTAAATATTGTGAAGGAGAAAAATCGTTCGAGCTAGACGAAGAAGACGAAGATCAAAAGATGTCTACGGAAATACATTCTTCTTCAATTTCAGAATCACCAGATGGAAACAGTCT : GTTTGTGGACGTACTGCATGAAGCACCTCTATCCGGTCATAGGAAGCCTACGAGCCTTATTGGGAGTATTTTCTACTGTTTCTTATTG : GCTTTGCTGTTTTGGCGGTGGGAGCTACATGGATATTTCACCCTATAGAAAGATTAGTGTTCCCACTTCTTTGCAGTTGTAATGCTGCCCTCCTTCTTGTCACAG : GCATTTTTCAGCAATATTTGGTCTATCAAGTCAAGAAAATACGGTTACAG : GAACTGCTGCGATGCTGCTTGTCATGGTTTGGGACCCACATATTGGCATCCTCTCTATGTTGACACTATTCAG : GTACCAGGATGGTGGTCGCCTGTCAGATCAGCAGATGGCGTTGTTGCAATATCAGCAAGAAAATATACACTTTTTGGGTGAGGAG : ATTCTTAGACTGCAAGAAACCTTGAGCAAATACGAAAGATGTAATGATGGGAGTGCACCTCAG : GTAGATCTTGCTCACCTGTTGGCAACTCGAGATCAAGAGTTACGTACTCTCAAAGCTGAG : ATGAATCAATTACAATCTGAGCTTAGGCTTGCTCGATCTATTGTAGAGGAGAAGGATGCTGAGATTCAGCGTATTCGCAATGCAAACAATCAG : TATGTAGAAGAAAACGAGAGGCTCAGAGCTATTTTGGGAGAATGGAGCAGCCGAGCAGCTAAGGTAGTACTTCTTATTTATGGTTCATTGCTATAATGCTGTCGTTTCCTTTTCCTCTATTACACCAAACGTCTTTTTTTTCTTGGCTGGATAAAAGCTCGAACGTGCTTTGGAGCTGGAAAGGATGTCAAACTTGGAACTGCAGAAAAATATAACCACACTGAAGATTCAAATGTGTGAATAGTTCAGCCTGACTAACTGCTAGATCTTCTTTTGCTGTGTACAATAGATCCTTGTGGTTCTGCTCTTCCTCGGACCCTGTGCATAGCAGGAGCTTTCATGCACTAGGCTGCCCGTTTTTAGATCTTTTGCAATACCATTGTTGGAAAACCTAATGGTTCCATCTGCACATGTACAGATTAAGCTCAAACAATTGTTTGCTCATCTTTCAGACTTTAAGCTTTGTATAGTTTTTCTCCACTACTATTTATCTCACATATTTTCTTCCTATTTTAGGTTTCTTTTGGATGAATCTGTTCTAACAATTTGCTTTTACTGTAAATTAGTCATTTTATTGCTATAGCCA</gDNA_template>
            <first_frame> F  S  K  *  F  F  L  K  K  L  *  I  L  *  R  R  K  I  V  R  A  R  R  R  R  R  R  S  K  D  V  Y  G  N  T  F  F  F  N  F  R  I  T  R  W  K  Q  S  :  V  C  G  R  T  A  *  S  T  S  I  R  S  *  E  A  Y  E  P  Y  W  E  Y  F  L  L  F  L  I   : G  F  A  V  L  A  V  G  A  T  W  I  F  H  P  I  E  R  L  V  F  P  L  L  C  S  C  N  A  A  L  L  L  V  T   : G  I  F  Q  Q  Y  L  V  Y  Q  V  K  K  I  R  L  Q  :  E  L  L  R  C  C  L  S  W  F  G  T  H  I  L  A  S  S  L  C  *  H  Y  S   : G  T  R  M  V  V  A  C  Q  I  S  R  W  R  C  C  N  I  S  K  K  I  Y  T  F  W  V  R  R :   F  L  D  C  K  K  P  *  A  N  T  K  D  V  M  M  G  V  H  L  R :   *  I  L  L  T  C  W  Q  L  E  I  K  S  Y  V  L  S  K  L  R :   *  I  N  Y  N  L  S  L  G  L  L  D  L  L  *  R  R  R  M  L  R  F  S  V  F  A  M  Q  T  I  S :   M  *  K  K  T  R  G  S  E  L  F  W  E  N  G  A  A  E  Q  L  R  *  Y  F  L  F  M  V  H  C  Y  N  A  V  V  S  F  S  S  I  T  P  N  V  F  F  F  L  A  G  *  K  L  E  R  A  L  E  L  E  R  M  S  N  L  E  L  Q  K  N  I  T  T  L  K  I  Q  M  C  E  *  F  S  L  T  N  C  *  I  F  F  C  C  V  Q  *  I  L  V  V  L  L  F  L  G  P  C  A  *  Q  E  L  S  C  T  R  L  P  V  F  R  S  F  A  I  P  L  L  E  N  L  M  V  P  S  A  H  V  Q  I  K  L  K  Q  L  F  A  H  L  S  D  F  K  L  C  I  V  F  L  H  Y  Y  L  S  H  I  F  S  S  Y  F  R  F  L  L  D  E  S  V  L  T  I  C  F  Y  C  K  L  V  I  L  L  L  *  P </first_frame>
            <second_frame>  F  R  S  N  F  F  *  R  N  C  K  Y  C  E  G  E  K  S  F  E  L  D  E  E  D  E  D  Q  K  M  S  T  E  I  H  S  S  S  I  S  E  S  P  D  G  N  S  L :   F  V  D  V  L  H  E  A  P  L  S  G  H  R  K  P  T  S  L  I  G  S  I  F  Y  C  F  L  L  :  A  L  L  F  W  R  W  E  L  H  G  Y  F  T  L  *  K  D  *  C  S  H  F  F  A  V  V  M  L  P  S  F  L  S  Q  :  A  F  F  S  N  I  W  S  I  K  S  R  K  Y  G  Y  R :   N  C  C  D  A  A  C  H  G  L  G  P  T  Y  W  H  P  L  Y  V  D  T  I  Q  :  V  P  G  W  W  S  P  V  R  S  A  D  G  V  V  A  I  S  A  R  K  Y  T  L  F  G  *  G   : D  S  *  T  A  R  N  L  E  Q  I  R  K  M  *  *  W  E  C  T  S   : G  R  S  C  S  P  V  G  N  S  R  S  R  V  T  Y  S  Q  S  *   : D  E  S  I  T  I  *  A  *  A  C  S  I  Y  C  R  G  E  G  C  *  D  S  A  Y  S  Q  C  K  Q  S   : V  C  R  R  K  R  E  A  Q  S  Y  F  G  R  M  E  Q  P  S  S  *  G  S  T  S  Y  L  W  F  I  A  I  M  L  S  F  P  F  P  L  L  H  Q  T  S  F  F  S  W  L  D  K  S  S  N  V  L  W  S  W  K  G  C  Q  T  W  N  C  R  K  I  *  P  H  *  R  F  K  C  V  N  S  S  A  *  L  T  A  R  S  S  F  A  V  Y  N  R  S  L  W  F  C  S  S  S  D  P  V  H  S  R  S  F  H  A  L  G  C  P  F  L  D  L  L  Q  Y  H  C  W  K  T  *  W  F  H  L  H  M  Y  R  L  S  S  N  N  C  L  L  I  F  Q  T  L  S  F  V  *  F  F  S  T  T  I  Y  L  T  Y  F  L  P  I  L  G  F  F  W  M  N  L  F  *  Q  F  A  F  T  V  N  *  S  F  Y  C  Y  S   </second_frame>
            <third_frame>   F  E  V  I  F  F  E  E  T  V  N  I  V  K  E  K  N  R  S  S  *  T  K  K  T  K  I  K  R  C  L  R  K  Y  I  L  L  Q  F  Q  N  H  Q  M  E  T  V   : C  L  W  T  Y  C  M  K  H  L  Y  P  V  I  G  S  L  R  A  L  L  G  V  F  S  T  V  S  Y  W :   L  C  C  F  G  G  G  S  Y  M  D  I  S  P  Y  R  K  I  S  V  P  T  S  L  Q  L  *  C  C  P  P  S  C  H  R :   H  F  S  A  I  F  G  L  S  S  Q  E  N  T  V  T   : G  T  A  A  M  L  L  V  M  V  W  D  P  H  I  G  I  L  S  M  L  T  L  F  R :   Y  Q  D  G  G  R  L  S  D  Q  Q  M  A  L  L  Q  Y  Q  Q  E  N  I  H  F  L  G  E  E  :  I  L  R  L  Q  E  T  L  S  K  Y  E  R  C  N  D  G  S  A  P  Q  :  V  D  L  A  H  L  L  A  T  R  D  Q  E  L  R  T  L  K  A  E  :  M  N  Q  L  Q  S  E  L  R  L  A  R  S  I  V  E  E  K  D  A  E  I  Q  R  I  R  N  A  N  N  Q  :  Y  V  E  E  N  E  R  L  R  A  I  L  G  E  W  S  S  R  A  A  K  V  V  L  L  I  Y  G  S  L  L  *  C  C  R  F  L  F  L  Y  Y  T  K  R  L  F  F  L  G  W  I  K  A  R  T  C  F  G  A  G  K  D  V  K  L  G  T  A  E  K  Y  N  H  T  E  D  S  N  V  *  I  V  Q  P  D  *  L  L  D  L  L  L  L  C  T  I  D  P  C  G  S  A  L  P  R  T  L  C  I  A  G  A  F  M  H  *  A  A  R  F  *  I  F  C  N  T  I  V  G  K  P  N  G  S  I  C  T  C  T  D  *  A  Q  T  I  V  C  S  S  F  R  L  *  A  L  Y  S  F  S  P  L  L  F  I  S  H  I  F  F  L  F  *  V  S  F  G  *  I  C  S  N  N  L  L  L  L  *  I  S  H  F  I  A  I  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0133N05.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55820" stop="55842"/>
                    <exon start="55998" stop="56047"/>
                    <exon start="58677" stop="58749"/>
                    <exon start="61856" stop="61940"/>
                    <exon start="62235" stop="62297"/>
                    <exon start="62844" stop="62903"/>
                    <exon start="63087" stop="63179"/>
                    <exon start="63691" stop="63786"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>540</number_coding_nucleotides>
                  <number_encoded_amino_acids>180</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CCPPSCHRHFSAIFGLSSQENTVTGTAAMLLVMVWDPHIGILSMLTLFRYQDGGRLSDQQMALLQYQQENIHFLGEEILRLQETLSKYERCNDGSAPQVDLAHLLATRDQELRTLKAEMNQLQSELRLARSIVEEKDAEIQRIRNANNQYVEENERLRAILGEWSSRAAKVVLLIYGSLL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0133N05.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52557" stop="52678"/>
                    <exon start="55558" stop="55645"/>
                    <exon start="55738" stop="55785"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNCKYCEGEKSFELDEEDEDQKMSTEIHSSSISESPDGNSLFVDVLHEAPLSGHRKPTSLIGSIFYCFLLALLFWRWELHGYFTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0133N05.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64019" stop="64273"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QELSCTRLPVFRSFAIPLLENLMVPSAHVQIKLKQLFAHLSDFKLCIVFLHYYLSHIFSSYFRFLLDESVLTICFYCKLVILLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="69284" PGL_stop="64826"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69284" e_stop="69069"/>
            <exon e_start="68972" e_stop="68830"/>
            <exon e_start="67952" e_stop="67771"/>
            <exon e_start="66008" e_stop="65919"/>
            <exon e_start="65367" e_stop="64934"/>
            <exon e_start="64842" e_stop="64826"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.799" e_score="1.000"/>
          <exon-intron don_prob="0.806" acc_prob="0.919" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.992" e_score="0.979"/>
          <exon-only e_score="0.529"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="69284" e_stop="69069" e_length="216"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="69068" i_stop="68973" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="68972" e_stop="68830" e_length="143"/>
          </exon>
          <intron i_serial="2" don_prob="0.963" acc_prob="0.799">
            <gDNA_intron_boundary i_start="68829" i_stop="67953" i_length="877"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67952" e_stop="67771" e_length="182"/>
          </exon>
          <intron i_serial="3" don_prob="0.806" acc_prob="0.919">
            <gDNA_intron_boundary i_start="67770" i_stop="66009" i_length="1762"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="66008" e_stop="65919" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.952">
            <gDNA_intron_boundary i_start="65918" i_stop="65368" i_length="551"/>
          </intron>
          <exon e_serial="5" e_score="0.979">
            <gDNA_exon_boundary e_start="65367" e_stop="64934" e_length="434"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="64933" i_stop="64843" i_length="91"/>
          </intron>
          <exon e_serial="6" e_score="0.529">
            <gDNA_exon_boundary e_start="64842" e_stop="64826" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69284" stop="69069"/>
              <exon start="68972" stop="68830"/>
              <exon start="67952" stop="67771"/>
              <exon start="66008" stop="65919"/>
              <exon start="65367" stop="64934"/>
              <exon start="64842" stop="64826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321991" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGTTCTTTCCACCGAGAAGAGCTGAAGGGATTTTCAGGTGTAAGTTCCTCCGGCGAACTTTCCGGTAAGAGGAAAGGGAATTTGGGGTTTAATTTTCTCCGGCGAACTTTCCGGTAAGAGGAAAGGGAATTTGGGGTTTAATTTTCTCCGGCGAATCTCCCGGTGAGAGGAAAAAGGGAACTGTTTCTGCAATCAACAGAATGCCAATCAAATG : GGTTTTGCACTGGCAACCAAATGCAGGGACAACAGTGAACAGTCAAATACTGACAGAAGTATCTCAATGTGTTGAGAGCATTAATGGTGTTAAAGAAGGAAGGTGGAAAGACACTCTTAGTTTCTATAAACCCATGCTTAGAG : TCGAACAAGCAAATTCACTGGAGTTTCCCCGAGATTTTCTGGGGATTTCACTTCAAGAACAGCCCAACAAGTATTACATGGTAATTAGAGGGCAACGGTTGATCATTGAAGCAGAGTCATCAATTCAGACGATAATGGAGAAGTTGCAGTCGTACAAAACGAGGGTGGCACTTAATTTTGAG : GGATTTCAGTATCAACTTGGTGACTTCCAGCTGCGAGTGGGGAAAGTTGTTACAATACACTCTGAGAACTTGAGGGGAATAGTTATGGAG : ATGGAGTATCTTCCGATTTCCTCATGGGAGACATCGCACCAAATTATGGGTGAATTCTTCGACATATGGCAGGAAGCTCTTGGAAAACGATCATTACCAGGTCATTTTGTGCACGTTGAACCAAATTTTTCAGAGTATGGTCTCTCTGATCAATACACTTCACAGCACACAGCTGTACAGTATGCTAGCATCATGGCTCAAATGATAGCAACAGCTCAATCATCACAACCAATGAGAAATTAGAAAGTAGCATAATGTTCTGTTGACAGTATTAACATTTTGGCTTGGTACCTTTTGTATTCTCAACACACAAACATTAAAAGAAACTGTAGTGTTCTGTTAACCAGGTCATTATGATGCTACTACTGCTGCCTTATATAGAAAACCAATGTTGAAGACAGATCTATAAGTAGTAAGAAACTGAAGTGTTTCGT : GAGCAAATTTGGAATAA</gDNA_template>
            <first_frame> L  V  L  S  T  E  K  S  *  R  D  F  Q  V  *  V  P  P  A  N  F  P  V  R  G  K  G  I  W  G  L  I  F  S  G  E  L  S  G  K  R  K  G  N  L  G  F  N  F  L  R  R  I  S  R  *  E  E  K  G  N  C  F  C  N  Q  Q  N  A  N  Q  M  :  G  F  A  L  A  T  K  C  R  D  N  S  E  Q  S  N  T  D  R  S  I  S  M  C  *  E  H  *  W  C  *  R  R  K  V  E  R  H  S  *  F  L  *  T  H  A  *  S :   R  T  S  K  F  T  G  V  S  P  R  F  S  G  D  F  T  S  R  T  A  Q  Q  V  L  H  G  N  *  R  A  T  V  D  H  *  S  R  V  I  N  S  D  D  N  G  E  V  A  V  V  Q  N  E  G  G  T  *  F  *   : G  I  S  V  S  T  W  *  L  P  A  A  S  G  E  S  C  Y  N  T  L  *  E  L  E  G  N  S  Y  G   : D  G  V  S  S  D  F  L  M  G  D  I  A  P  N  Y  G  *  I  L  R  H  M  A  G  S  S  W  K  T  I  I  T  R  S  F  C  A  R  *  T  K  F  F  R  V  W  S  L  *  S  I  H  F  T  A  H  S  C  T  V  C  *  H  H  G  S  N  D  S  N  S  S  I  I  T  T  N  E  K  L  E  S  S  I  M  F  C  *  Q  Y  *  H  F  G  L  V  P  F  V  F  S  T  H  K  H  *  K  K  L  *  C  S  V  N  Q  V  I  M  M  L  L  L  L  P  Y  I  E  N  Q  C  *  R  Q  I  Y  K  *  *  E  T  E  V  F  R  :  E  Q  I  W  N   </first_frame>
            <second_frame>  *  F  F  P  P  R  R  A  E  G  I  F  R  C  K  F  L  R  R  T  F  R  *  E  E  R  E  F  G  V  *  F  S  P  A  N  F  P  V  R  G  K  G  I  W  G  L  I  F  S  G  E  S  P  G  E  R  K  K  G  T  V  S  A  I  N  R  M  P  I  K  W :   V  L  H  W  Q  P  N  A  G  T  T  V  N  S  Q  I  L  T  E  V  S  Q  C  V  E  S  I  N  G  V  K  E  G  R  W  K  D  T  L  S  F  Y  K  P  M  L  R   : V  E  Q  A  N  S  L  E  F  P  R  D  F  L  G  I  S  L  Q  E  Q  P  N  K  Y  Y  M  V  I  R  G  Q  R  L  I  I  E  A  E  S  S  I  Q  T  I  M  E  K  L  Q  S  Y  K  T  R  V  A  L  N  F  E  :  G  F  Q  Y  Q  L  G  D  F  Q  L  R  V  G  K  V  V  T  I  H  S  E  N  L  R  G  I  V  M  E  :  M  E  Y  L  P  I  S  S  W  E  T  S  H  Q  I  M  G  E  F  F  D  I  W  Q  E  A  L  G  K  R  S  L  P  G  H  F  V  H  V  E  P  N  F  S  E  Y  G  L  S  D  Q  Y  T  S  Q  H  T  A  V  Q  Y  A  S  I  M  A  Q  M  I  A  T  A  Q  S  S  Q  P  M  R  N  *  K  V  A  *  C  S  V  D  S  I  N  I  L  A  W  Y  L  L  Y  S  Q  H  T  N  I  K  R  N  C  S  V  L  L  T  R  S  L  *  C  Y  Y  C  C  L  I  *  K  T  N  V  E  D  R  S  I  S  S  K  K  L  K  C  F  V :   S  K  F  G  I  </second_frame>
            <third_frame>   S  S  F  H  R  E  E  L  K  G  F  S  G  V  S  S  S  G  E  L  S  G  K  R  K  G  N  L  G  F  N  F  L  R  R  T  F  R  *  E  E  R  E  F  G  V  *  F  S  P  A  N  L  P  V  R  G  K  R  E  L  F  L  Q  S  T  E  C  Q  S  N   : G  F  C  T  G  N  Q  M  Q  G  Q  Q  *  T  V  K  Y  *  Q  K  Y  L  N  V  L  R  A  L  M  V  L  K  K  E  G  G  K  T  L  L  V  S  I  N  P  C  L  E  :  S  N  K  Q  I  H  W  S  F  P  E  I  F  W  G  F  H  F  K  N  S  P  T  S  I  T  W  *  L  E  G  N  G  *  S  L  K  Q  S  H  Q  F  R  R  *  W  R  S  C  S  R  T  K  R  G  W  H  L  I  L  R :   D  F  S  I  N  L  V  T  S  S  C  E  W  G  K  L  L  Q  Y  T  L  R  T  *  G  E  *  L  W  R :   W  S  I  F  R  F  P  H  G  R  H  R  T  K  L  W  V  N  S  S  T  Y  G  R  K  L  L  E  N  D  H  Y  Q  V  I  L  C  T  L  N  Q  I  F  Q  S  M  V  S  L  I  N  T  L  H  S  T  Q  L  Y  S  M  L  A  S  W  L  K  *  *  Q  Q  L  N  H  H  N  Q  *  E  I  R  K  *  H  N  V  L  L  T  V  L  T  F  W  L  G  T  F  C  I  L  N  T  Q  T  L  K  E  T  V  V  F  C  *  P  G  H  Y  D  A  T  T  A  A  L  Y  R  K  P  M  L  K  T  D  L  *  V  V  R  N  *  S  V  S   : *  A  N  L  E  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0133N05.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69190" stop="69069"/>
                    <exon start="68972" stop="68830"/>
                    <exon start="67952" stop="67771"/>
                    <exon start="66008" stop="65919"/>
                    <exon start="65367" stop="65125"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>777</number_coding_nucleotides>
                  <number_encoded_amino_acids>259</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSPANFPVRGKGIWGLIFSGESPGERKKGTVSAINRMPIKWVLHWQPNAGTTVNSQILTEVSQCVESINGVKEGRWKDTLSFYKPMLRVEQANSLEFPRDFLGISLQEQPNKYYMVIRGQRLIIEAESSIQTIMEKLQSYKTRVALNFEGFQYQLGDFQLRVGKVVTIHSENLRGIVMEMEYLPISSWETSHQIMGEFFDIWQEALGKRSLPGHFVHVEPNFSEYGLSDQYTSQHTAVQYASIMAQMIATAQSSQPMRN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 21 chains have been computed
$ 
$ memory statistics:
$ 148480 bytes spliced alignments in total
$ 12 spliced alignments have been stored
$ 12373 bytes was the average size of a spliced alignment
$ 17512 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1751 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 23 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 13:46:12
-->
